Psyllid ID: psy11648

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580----
Protein Sequence
MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRPI
Secondary Structure (PSIPRED)
cEEEcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccccccccccccEEEEccccccccccccHHcccccHHHHcccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEccccccccccHHHHHccccccEEEccccccccEEcccccccccccccEEccccccccccccccHHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHccccccccEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccHHHHHHHHccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccccccccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccccccccHHHcccccccEEEcccccccccccccccEEEcccccccccccHHHccccccEEEEEEEccccccccccHHHccccccEEEEEEcccccccccccHHHHHHHHHHHccccccccHHHcccccccEEEcccccccccccHHHHcHHHHHHEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccccHHHcccccccEEEEccccccccccccHHHHccccccEEEEcccccccccccHHHcccccccEEEccccccccccccHccHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEccccccccccccccHHHccccccEEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHccccEEEEEEEEcccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHccccc
Coil and Loop (DISEMBL)
mtldlshnkLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEItgkdlkfidpsafdnidaCYDLTLKITNTQIeelpsglfdkiENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKknnnnnedqvSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSlfnsnefpyYILNKNLNTLEWLAMDNnniknirnysLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNyleliesdtfynlKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNqikyiypnafvnlpnlvkldlqdnklkdfnLNVFSnitskqtpmnlnlsnNYITNLyendkkqapIYIKSLdlsnnriqevpvNFLQTFADSLRKLYLDFNeikhldatafgnLDVLELLSLEHNNIAVVVKRtfigmpnlqiidLSFNEISMLTGEQFYFSFKLRILNISHNrlrslprdvfsnTIIEKLDisynqdkirpgresnprpi
Flexible Loop (DISEMBL)
MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVkakknnnnnedqvsdREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSnitskqtpmnlNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNrlrslprdvfsntiiekldisynqdkirpgresnprpi
Low Complexity Region (SEG)
MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKllsnletlllRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKllsnletlllRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRPI
Disordered region (IsUnstruct)
*********LSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQK**********************LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISY****************
Disordered Region (DISOPRED)
MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRP*
Disordered Region (DISEMBL)
MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIR**********
Disordered Region (DISPRO)
*TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRPI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRPI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	584	2.2.26 [Sep-21-2011]
P82963	782	Chaoptin (Fragment) OS=Tr	no	N/A	0.570	0.425	0.348	1e-38
P12024	1315	Chaoptin OS=Drosophila me	no	N/A	0.643	0.285	0.298	4e-34
P70389	603	Insulin-like growth facto	yes	N/A	0.477	0.462	0.300	7e-26
P35859	603	Insulin-like growth facto	yes	N/A	0.489	0.474	0.315	1e-23
P35858	605	Insulin-like growth facto	yes	N/A	0.510	0.492	0.271	1e-23
O02833	605	Insulin-like growth facto	N/A	N/A	0.488	0.471	0.288	6e-23
Q80X72	579	Leucine-rich repeat-conta	no	N/A	0.5	0.504	0.294	3e-20
Q8TF66	581	Leucine-rich repeat-conta	no	N/A	0.558	0.561	0.281	6e-20
Q8R5M3	578	Leucine-rich repeat-conta	no	N/A	0.623	0.629	0.273	8e-20
Q496Z2	811	TLR4 interactor with leuc	no	N/A	0.501	0.361	0.275	1e-19

>sp|P82963|CHAO_TRICA Chaoptin (Fragment) OS=Tribolium castaneum GN=CHP PE=2 SV=1

 Score =  161 bits (407), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/344 (34%), Positives = 188/344 (54%), Gaps = 11/344 (3%)

Query: 235 DVFEKLQLLEISFSLFNSNE-FPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNY 293
           D+ + L  L+++ +L +S + FP   + K LN LE L + NN ++N+ + S + L SL  
Sbjct: 12  DIGDSLLTLKLTHALSSSVQNFPSDAI-KILNRLEELDLSNNRLRNVPDNSFHFLRSLKK 70

Query: 294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS 353
           ++L+ N I  IH   F  +IH+ L E+  S N +  ++  TF +L +L  I L  N ++S
Sbjct: 71  VHLQDNTIEMIHRGTFQGDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIES 130

Query: 354 IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSK 413
           ++  +F NL ++  + L  N+I  I    F NLP L  LDL  N +   + N+F  + S 
Sbjct: 131 LERRAFMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFDQVGSL 190

Query: 414 QTPMNLNLSNNYITNL-------YENDKKQAPIY-IKSLDLSNNRIQEVPVNFLQTFADS 465
               ++N+S+N + NL       +E D     +  IK LDLS N I  V   F +    S
Sbjct: 191 GM-FHVNMSHNKLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITSVAKQFFRPVELS 249

Query: 466 LRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
           L +LYL  N++ +     FGN+  L++L L HN++  +   TF     LQ +D S N IS
Sbjct: 250 LMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKKLQWLDTSHNRIS 309

Query: 526 MLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYN 569
            +  + F F   LRI++ SHNRLRSLP ++F  T +E+LD+S+N
Sbjct: 310 EIPNDLFRFLGNLRIVDFSHNRLRSLPDNLFRETGLERLDVSHN 353

Required for photoreceptor cell morphogenesis. Mediates homophilic cellular adhesion.
Tribolium castaneum (taxid: 7070)

>sp|P12024|CHAO_DROME Chaoptin OS=Drosophila melanogaster GN=chp PE=1 SV=2

 Score =  146 bits (369), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 200/388 (51%), Gaps = 12/388 (3%)

Query: 190 LETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSL 249
           LE L +    ++ +  + F+H+  L+ L  S N +  IE N    ++   L  L++S   
Sbjct: 454 LEDLQITRASLSGIQSHAFKHVRGLKRLDFSENGISSIE-NDAFHEIGHSLISLKMSHG- 511

Query: 250 FNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLF 309
           ++ +  P   L ++L +L+ L   NN+I ++ + S + L +L  + L  N+I ++    F
Sbjct: 512 YSGSALPAEPL-RHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTF 570

Query: 310 HFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIV 369
             +IH +L+EI L  N+L  I   TF++L+ L  + L  N +  I+  +F NL+ +  + 
Sbjct: 571 QGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLS 630

Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
           L  N+I  +   +F NLP L  LD+  N+L +FN + F  + +    +N+N+S+N I  L
Sbjct: 631 LRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDYFDQVGTLSN-LNVNVSHNQIRQL 689

Query: 430 -----YENDKKQAPIY---IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA 481
                +    +   +Y   IK LDLS+N I  +   + +    SL  L+L +N + +   
Sbjct: 690 MYNSSWSGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTR 749

Query: 482 TAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRIL 541
             FGN+  L+ L L +N I  +    F     LQ++    N +S +  + F     LRI+
Sbjct: 750 DVFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIV 809

Query: 542 NISHNRLRSLPRDVFSNTIIEKLDISYN 569
           + SHN LR LP ++F N  +EKLD+S+N
Sbjct: 810 DFSHNHLRGLPDNLFYNGGMEKLDVSHN 837

Required for photoreceptor cell morphogenesis. Mediates homophilic cellular adhesion.

Drosophila melanogaster (taxid: 7227)

>sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1

 Score =  119 bits (298), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 152/316 (48%), Gaps = 37/316 (11%)

Query: 270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH-------NNLFHFNIHK------- 315
           L +D NN+ +I + +  NL+SL+++NL+ + +  +         NL+H ++ +       
Sbjct: 79  LWLDGNNLSSIPSAAFQNLSSLDFLNLQGSWLRSLEPQALLGLQNLYHLHLERNLLRSLA 138

Query: 316 --------RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
                    L  + L NN L  +E   F  L  L  + L +N L  +  T F+ L N+  
Sbjct: 139 AGLFRHTPSLASLSLGNNLLGRLEEGLFRGLSHLWDLNLGWNSLVVLPDTVFQGLGNLHE 198

Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
           +VL+ N++ Y+ P     L  L +LDL  N L+    NVF ++   Q    L L  N IT
Sbjct: 199 LVLAGNKLTYLQPALLCGLGELRELDLSRNALRSVKANVFIHLPRLQ---KLYLDRNLIT 255

Query: 428 NLYENDKKQAPIYIKSL---DLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDAT 482
            +      +A + +K+L   DLS+NR+  +      TF     L  L L  N I  L   
Sbjct: 256 AV----APRAFLGMKALRWLDLSHNRVAGL---LEDTFPGLLGLHVLRLAHNAITSLRPR 308

Query: 483 AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
            F +L  LE L L HN I  + ++TF G+  L+++ L+ N+I  +    F+  F + ++N
Sbjct: 309 TFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKVGAFFGLFNVAVMN 368

Query: 543 ISHNRLRSLPRDVFSN 558
           +S N LRSLP  VF  
Sbjct: 369 LSGNCLRSLPEHVFQG 384

May have an important role in regulating the access of circulating IGFs to the tissues.

Mus musculus (taxid: 10090)

>sp|P35859|ALS_RAT Insulin-like growth factor-binding protein complex acid labile subunit OS=Rattus norvegicus GN=Igfals PE=1 SV=1

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 152/301 (50%), Gaps = 15/301 (4%)

Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
           +NL++L++L +  + ++++   +L  L +L Y++LE N++  +   LF       L  + 
Sbjct: 95  QNLSSLDFLNLQGSWLRSLEPQALLGLQNLYYLHLERNRLRNLAVGLFTHT--PSLASLS 152

Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
           LS+N L  +E   F  L  L  + L +N L  +  T F+ L N+  +VL+ N++ Y+ P 
Sbjct: 153 LSSNLLGRLEEGLFQGLSHLWDLNLGWNSLVVLPDTVFQGLGNLHELVLAGNKLTYLQPA 212

Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND--KKQAPI 439
            F  L  L +LDL  N L+    NVF ++   Q    L L  N IT +        +A  
Sbjct: 213 LFCGLGELRELDLSRNALRSVKANVFVHLPRLQ---KLYLDRNLITAVAPGAFLGMKA-- 267

Query: 440 YIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
            ++ LDLS+NR+  +      TF     L  L L  N I  L    F +L  LE L L H
Sbjct: 268 -LRWLDLSHNRVAGL---MEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFLEELQLGH 323

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
           N I  + +RTF G+  L+++ L+ N+I+ +    F   F + ++N+S N LRSLP  VF 
Sbjct: 324 NRIRQLGERTFEGLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQ 383

Query: 558 N 558
            
Sbjct: 384 G 384

May have an important role in regulating the access of circulating IGFs to the tissues.

Rattus norvegicus (taxid: 10116)

>sp|P35858|ALS_HUMAN Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 155/343 (45%), Gaps = 45/343 (13%)

Query: 251 NSNEFPYYILNKNLNTL--------EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS 302
           +++E   +  ++NL  L        + L +D NN+ ++   +  NL+SL ++NL+  ++ 
Sbjct: 52  DADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLG 111

Query: 303 KIH-------NNLFHFNIHK---------------RLKEIRLSNNYLELIESDTFYNLKE 340
            +         NL H ++ +                L  + LSNN L  +E   F  L  
Sbjct: 112 SLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGS 171

Query: 341 LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLK 400
           L  + L +N L  +   +F+ L ++  +VL+ N++ Y+ P  F  L  L +LDL  N L+
Sbjct: 172 LWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALR 231

Query: 401 DFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSL---DLSNNRIQEVPVN 457
               NVF  +   Q    L L  N I  +       A + +K+L   DLS+NR+  +   
Sbjct: 232 AIKANVFVQLPRLQ---KLYLDRNLIAAVAPG----AFLGLKALRWLDLSHNRVAGL--- 281

Query: 458 FLQTFADSLRKLYL--DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ 515
              TF   L    L    N I  L    F +L  LE L L HN I  + +R+F G+  L+
Sbjct: 282 LEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLE 341

Query: 516 IIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
           ++ L  N++  +    F     + ++N+S N LR+LP  VF  
Sbjct: 342 VLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRG 384

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Homo sapiens (taxid: 9606)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score =  109 bits (272), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 144/302 (47%), Gaps = 17/302 (5%)

Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
           +NL++L +L +    + ++   +L  L +L +++LE N++  +    F +     L  + 
Sbjct: 95  RNLSSLAFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLAVGTFAYT--PALALLG 152

Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
           LSNN L  +E   F  L  L  + L +N L  +   +F+ L  +  +VL+ N++ Y+ P 
Sbjct: 153 LSNNRLSRLEDGLFEGLGNLWDLNLGWNSLAVLPDAAFRGLGGLRELVLAGNRLAYLQPA 212

Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
            F  L  L +LDL  N L+    NVF+ +   Q    L L  N I  +       A + +
Sbjct: 213 LFSGLAELRELDLSRNALRAIKANVFAQLPRLQ---KLYLDRNLIAAVAPG----AFLGL 265

Query: 442 KSL---DLSNNRIQEVPVNFLQTFADSLRKLYL--DFNEIKHLDATAFGNLDVLELLSLE 496
           K+L   DLS+NR+  +      TF   L    L    N I  L    F +L  LE L L 
Sbjct: 266 KALRWLDLSHNRVAGL---LEDTFPGLLGLRVLRLSHNAIASLRPRTFEDLHFLEELQLG 322

Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
           HN I  + +R+F G+  L+++ L  N++  +    F     + ++N+S N LR+LP  VF
Sbjct: 323 HNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKVGAFLGLTNVAVMNLSGNCLRNLPEQVF 382

Query: 557 SN 558
             
Sbjct: 383 RG 384

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

>sp|Q80X72|LRC15_MOUSE Leucine-rich repeat-containing protein 15 OS=Mus musculus GN=Lrrc15 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 151/319 (47%), Gaps = 27/319 (8%)

Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH------------ 310
           N++ L  L M+ N + NI   +  NL SL +++L  NK+  +   LF             
Sbjct: 75  NISALIALKMEKNELANIMPGAFRNLGSLRHLSLANNKLKNLPVRLFQDVNNLETLLLSN 134

Query: 311 ----------FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFK 360
                     F+    LKE++L  N LE I    F +L  L  + L  N    +    F+
Sbjct: 135 NQLVQIQPAQFSQFSNLKELQLYGNNLEYIPEGVFDHLVGLTKLNLGNNGFTHLSPRVFQ 194

Query: 361 NLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN 420
           +L N+  + L  N++  I    F  L NL +L LQ+N++   +  +F N  + Q    L 
Sbjct: 195 HLGNLQVLRLYENRLSDIPMGTFDALGNLQELALQENQIGTLSPGLFHNNRNLQ---RLY 251

Query: 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLD 480
           LSNN+I++L      Q P ++  L L  N ++E+         + LR+L+L  N I  L 
Sbjct: 252 LSNNHISHLPPGIFMQLP-HLNKLTLFGNSLKELSPGVFGPMPN-LRELWLYNNHITSLP 309

Query: 481 ATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRI 540
             AF +L+ L++L L HN ++ +    F G+ NL+ + L  N +  L G  F     LR 
Sbjct: 310 DNAFSHLNQLQVLILSHNQLSYISPGAFNGLTNLRELSLHTNALQDLDGNVFRSLANLRN 369

Query: 541 LNISHNRLRSLPRDVFSNT 559
           +++ +NRLR LP  +F+N 
Sbjct: 370 VSLQNNRLRQLPGSIFANV 388

Mus musculus (taxid: 10090)

>sp|Q8TF66|LRC15_HUMAN Leucine-rich repeat-containing protein 15 OS=Homo sapiens GN=LRRC15 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 163/362 (45%), Gaps = 36/362 (9%)

Query: 225 QIIELNSNVFDVFEKLQLLEISFSLFNS-----NEFPYYILNKNLNTLEWLAMDNNNIKN 279
           Q+    + +  V   L    +S  + N+     NE P+     N++ L  L ++ N +  
Sbjct: 36  QVECTGARIVAVPTPLPWNAMSLQILNTHITELNESPFL----NISALIALRIEKNELSR 91

Query: 280 IRNYSLYNLTSLNYINLEYNKISKIHNNLF----------------------HFNIHKRL 317
           I   +  NL SL Y++L  NK+  +   LF                      HF+    L
Sbjct: 92  ITPGAFRNLGSLRYLSLANNKLQVLPIGLFQGLDSLESLLLSSNQLLQIQPAHFSQCSNL 151

Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
           KE++L  N+LE I    F +L  L  + L  N L  I    F++L N+  + L  N++  
Sbjct: 152 KELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTD 211

Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA 437
           I    F  L NL +L LQ N++   +  +F N  + Q    L LSNN+I+ L  +   Q 
Sbjct: 212 IPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQ---RLYLSNNHISQLPPSVFMQL 268

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P  +  L L  N ++E+         + LR+L+L  N I  L    F NL  L++L L  
Sbjct: 269 P-QLNRLTLFGNSLKELSPGIFGPMPN-LRELWLYDNHISSLPDNVFSNLRQLQVLILSR 326

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
           N I+ +    F G+  L+ + L  N +  L G  F     L+ +++ +NRLR LP ++F+
Sbjct: 327 NQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLRQLPGNIFA 386

Query: 558 NT 559
           N 
Sbjct: 387 NV 388

Homo sapiens (taxid: 9606)

>sp|Q8R5M3|LRC15_RAT Leucine-rich repeat-containing protein 15 OS=Rattus norvegicus GN=Lrrc15 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 189/395 (47%), Gaps = 31/395 (7%)

Query: 44  SKLRELEITG-KDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLD 102
           S+  ++E TG + +    P  ++       ++L++ NT I ELP  LF  I  +  + L 
Sbjct: 32  SRASQVECTGARIVAMPTPLPWN------AMSLQVVNTHITELPENLFLNISAL--IALK 83

Query: 103 LSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLS--------NLETLLLRCNKITDL 154
           +  N+LS + M   + N+  L++L  ++  ++ ++L         NLE+LLL  N++  +
Sbjct: 84  MEKNELSTI-MPGAFRNLGSLRYL--SLANNKLRMLPIRVFQDVNNLESLLLSNNQLVQI 140

Query: 155 NGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNL 214
               F     ++ + + + NN E    +    L  L  L L  N  T L+  LF+HL NL
Sbjct: 141 QPAQFSQF-SNLRELQLHGNNLESIPEEAFDHLVGLTKLNLGRNSFTHLSPRLFQHLGNL 199

Query: 215 QELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDN 274
           Q L L  N+L  I + +  FD    LQ L +  +   +     +  N+NL   + L + N
Sbjct: 200 QVLRLHENRLSDIPMGT--FDALGNLQELALQENQIGTLSPGLFHNNRNL---QRLYLSN 254

Query: 275 NNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDT 334
           N+I  +       L  LN + L  N + ++   +F       L+E+ L NN++  +  +T
Sbjct: 255 NHISQLPPGIFMQLPQLNKLTLFGNSLRELSPGVF--GPMPNLRELWLYNNHITSLADNT 312

Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
           F +L +L  + LS+N L  I   +F  L N+  + L  N ++ +  N F +L NL  + L
Sbjct: 313 FSHLNQLQVLILSHNQLTYISPGAFNGLTNLRELSLHTNALQDLDSNVFRSLANLQNISL 372

Query: 395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
           Q N+L+    ++F+N+    T   + L NN + NL
Sbjct: 373 QSNRLRQLPGSIFANVNGLTT---IQLQNNNLENL 404

Rattus norvegicus (taxid: 10116)

>sp|Q496Z2|TRIL_RAT TLR4 interactor with leucine rich repeats OS=Rattus norvegicus GN=Tril PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 144/301 (47%), Gaps = 8/301 (2%)

Query: 271 AMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELI 330
           ++  N I NI  +  + L  L  ++L+YN+I  +H   F      RL+E+ L NN L+ +
Sbjct: 65  SLGGNFITNITAFDFHRLGQLRRLDLQYNQIRSLHPKTF--EKLSRLEELYLGNNLLQAL 122

Query: 331 ESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLV 390
              T   L++L  +  + N +  +   SF+ L +++ + L  N +  +    F  L NL+
Sbjct: 123 APGTLAPLRKLRILYANGNEIGRLSRGSFEGLESLVKLRLDGNVLGALPDAVFAPLGNLL 182

Query: 391 KLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY-IKSLDLSNN 449
            L L+ N+++    N F+ +   +    LNLS N +     +     P+  + +L LS N
Sbjct: 183 YLHLEANRIRFLGKNAFTQLGKLRF---LNLSANELQPSLRHAATFVPLRSLSTLILSAN 239

Query: 450 RIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFI 509
            +Q +     Q     L  L L  N++ HL   AF  L+ L  L LE N +  +      
Sbjct: 240 SLQHLGPRVFQHLP-RLGLLSLSGNQLTHLAPEAFWGLEALRELRLEGNRLNQLPLTLLE 298

Query: 510 GMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF-SNTIIEKLDISY 568
            + +L+ +DLS NE+S L    F    +LR L++  N L +L  D+F ++  + +LD+  
Sbjct: 299 PLHSLEALDLSGNELSALHPATFGHQGRLRELSLRDNALSALSGDIFAASPALYRLDLDG 358

Query: 569 N 569
           N
Sbjct: 359 N 359

Component of the TLR4 signaling complex. Mediate the innate immune response to bacterial lipopolysaccharide (LPS) leading to cytokine secretion and the inflammatory response.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	584
328723113	1138	PREDICTED: chaoptin-like [Acyrthosiphon	0.863	0.442	0.371	8e-70
242012034	1248	chaoptin, putative [Pediculus humanus co	0.957	0.447	0.353	5e-68
91079120	1219	PREDICTED: similar to putative GPCR clas	0.885	0.424	0.360	4e-67
194760825	1333	GF15558 [Drosophila ananassae] gi|190616	0.654	0.286	0.418	4e-64
195115565	1336	GI17327 [Drosophila mojavensis] gi|19391	0.654	0.285	0.418	1e-63
195385595	1335	GJ15952 [Drosophila virilis] gi|19414794	0.654	0.286	0.415	3e-63
198476363	1445	GA18003 [Drosophila pseudoobscura pseudo	0.652	0.263	0.417	4e-63
195437135	1357	GK18063 [Drosophila willistoni] gi|19416	0.652	0.280	0.422	4e-63
195155943	1337	GL25723 [Drosophila persimilis] gi|19411	0.654	0.285	0.413	1e-62
195030254	1339	GH10816 [Drosophila grimshawi] gi|193903	0.808	0.352	0.380	2e-62

>gi|328723113|ref|XP_001943629.2| PREDICTED: chaoptin-like [Acyrthosiphon pisum]

 Score =  271 bits (692), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 203/547 (37%), Positives = 316/547 (57%), Gaps = 43/547 (7%)

Query: 44  SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDL 103
           S++R L +    L+ +D +AFD + +   + + ++  +++ L    F+ +E I +  LDL
Sbjct: 269 SEVRNLHLDMNRLESLDANAFDGLRS---VRMYLSYNKLKNLNHKTFEGLERILEY-LDL 324

Query: 104 SHNKLSVL--------NMATLYSNVTKLQHL------GTTILKDREKLLSNLET-----L 144
            HN L ++        N+  LY +   L  L      G +       L  NL T      
Sbjct: 325 EHNNLGIIPTAIRTLKNLKFLYLSSNDLNKLDSADFTGVSSSLRSLSLSGNLLTEIPSHA 384

Query: 145 LLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN 204
           L+ C K++ LN      L  + ++  K N+  E           +L+TLLL  NK+ +L 
Sbjct: 385 LMNCTKLSHLN------LGYNFIREIKENDFGE--------WARHLDTLLLMNNKLKELI 430

Query: 205 GNLFRHLYNLQELSLSFNKLQIIELNSNVF-DVFEKLQLLEISFSLFNSNEFPYYILNKN 263
           G  F++  +L+ELSLSFN +  ++  ++VF D+   L+ LEISF ++  N FP  IL ++
Sbjct: 431 GRPFKNTNSLRELSLSFNNIHYVD--ADVFLDLATSLESLEISFGVYYDN-FPVKIL-RH 486

Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
           L +L WL +DNN+I ++   SL++L SL Y+NLE N+IS +    F       L+E+RL+
Sbjct: 487 LKSLLWLVLDNNDISSVPFDSLHSLDSLQYLNLESNRISVLAPRTFSSPNQTDLREVRLN 546

Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
            NYL  +E +TF NL++L TIT+S N +  + + SFK L  +LNI LS+NQI+YI P+AF
Sbjct: 547 QNYLMSLEPNTFSNLQQLQTITISRNKIIEVMSHSFKELPRLLNIDLSYNQIEYIQPSAF 606

Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
            +LPN  +LDLQ N+LK+  +  F N T+ +TP++LN+SNN I     +D    P++IK 
Sbjct: 607 DSLPNFKRLDLQGNQLKELRMTSFVNCTNSKTPLSLNVSNNCIERTPIDD-SLTPVHIKI 665

Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
           LDLS+N +Q++P   L   + SLR LYLD N I  +  + F NL  LE+LS+  N +  +
Sbjct: 666 LDLSHNSLQDLPFKLLYFISSSLRNLYLDHNRITKIYNSEFINLTNLEVLSITENGMTSI 725

Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEK 563
             + F  + +LQI+ LS N+I  L+ EQF    KLR+L+++ NRL +L  DV S T +E 
Sbjct: 726 ASKAFSNLTSLQILYLSGNKIQQLSSEQFATLPKLRVLSLARNRLSTLSWDVLSGTPLEY 785

Query: 564 LDISYNQ 570
           +D+S N+
Sbjct: 786 IDLSNNE 792

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012034|ref|XP_002426747.1| chaoptin, putative [Pediculus humanus corporis] gi|212510923|gb|EEB14009.1| chaoptin, putative [Pediculus humanus corporis]

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 216/611 (35%), Positives = 327/611 (53%), Gaps = 52/611 (8%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGI------FNSKLRELEITGKD 55
           TL  SHN LS   M      + K+  L    L G+ ++ I        +KL +L++   D
Sbjct: 210 TLSASHNFLSHFPMEA----IEKMPSLSWLYLNGNYIENIPHVGFKHKTKLDKLDLREND 265

Query: 56  LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
           ++ +  + F+      DL L      I+ LP  +F     +   +L +++N+L  ++  +
Sbjct: 266 IRELTKTIFNGSITIKDLLLDFN--YIQTLPPQVF---RGLNLRSLHMTNNRLKEISSKS 320

Query: 116 L-----YSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAK 170
                 Y  +  L++     +    K L  L+   +  N IT++N + F     +++KA 
Sbjct: 321 FIGLGPYLELLDLENNYLNGIPKALKQLKRLKLFYIPNNNITEINDDDFESFS-NVLKAL 379

Query: 171 KNNNNNEDQV--------------------------SDREKLLSNLETLLLRCNKITDLN 204
               NN D +                          SD +     L TL+LR N++T+L 
Sbjct: 380 SLARNNLDFIPFNALRDCVKLSHLNIGYNRISRINESDFDNWGEKLHTLILRSNRLTELP 439

Query: 205 GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNL 264
            N+FR    L+ELSLSFNKL  I  +   F     L+ LE SF +  S +FP   L K L
Sbjct: 440 ANVFRKTPQLKELSLSFNKLHYI--HEQAFADLINLESLEASFGI-TSEDFPKNHL-KPL 495

Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN 324
             L WL++DNN I+ I++ S    T L Y+NLE N++ KI  +LF  ++ + L+++RLS 
Sbjct: 496 KNLIWLSLDNNQIRTIKSDSFLRFTKLQYLNLESNRLDKIETDLFPGSVLQDLRDVRLSY 555

Query: 325 NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFV 384
           N +  IE + F NLK L T+ L+ N LK +   +F +LNN++ + L+ N+IK I PN FV
Sbjct: 556 NNIIEIEENGFSNLKSLQTLLLNGNKLKKLNGYTFNDLNNLMALSLTNNKIKTISPNTFV 615

Query: 385 NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSL 444
           NLPNL++L+LQ N+LK  +L+ F N+T+ + PM  NLS N I NL         IY+K L
Sbjct: 616 NLPNLMRLELQFNQLKMVSLHSFLNVTNSEAPMLFNLSYNQIVNLTTGYTGNE-IYVKVL 674

Query: 445 DLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV 504
           DLS+N IQE+P+N LQ F  SL+ L L +N +  L   AF  L +LE+L+LEHN I  + 
Sbjct: 675 DLSHNNIQEIPINCLQNFGKSLKTLNLGYNALTKLVRNAFEELKLLEVLNLEHNKIIKID 734

Query: 505 KRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKL 564
           ++ F G+  LQII+LS N+I  L  +QF     LR L++S NR+RS+ R++F NT +E L
Sbjct: 735 RKGFYGLDLLQIINLSENKIDQLQTDQFKNLDNLRYLDLSKNRIRSVSREIFQNTRLEYL 794

Query: 565 DISYNQDKIRP 575
            +S N   + P
Sbjct: 795 LLSSNDFVVVP 805

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079120|ref|XP_975409.1| PREDICTED: similar to putative GPCR class b orphan receptor 1 (AGAP009007-PA) [Tribolium castaneum] gi|270004885|gb|EFA01333.1| chaoptic-like protein [Tribolium castaneum]

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 196/543 (36%), Positives = 308/543 (56%), Gaps = 26/543 (4%)

Query: 42  FNSK--LRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQM 99
           FNS   +R+L +   D K +   +F  +  C  + L  +   +E+L    F+ IE+  + 
Sbjct: 252 FNSSVYIRDLNLAFNDFKTLSSQSFAGLQ-CGRIIL--SYNMLEDLEIRTFEGIEDTLEY 308

Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKD-----REKLLSNLETLLLRCNKITDL 154
            LD  HN    +  A    N  K  +L + +L +      +   S+L+ + L  N++T +
Sbjct: 309 -LDFDHNNFQRIPYALGQLNSLKYLYLSSNLLSEIPERAFDTFCSSLKAVSLSGNRLTRI 367

Query: 155 NGNLFRHLQKSIVKAKKNNNNNEDQVSDRE-KLLSNLETLLLRCNKITDLNGNLFRHLYN 213
                ++  K  +       N   ++ + +    SN+++L+L  N+IT L  ++F  L  
Sbjct: 368 PVETLQNCSK--ISHFNIGFNEIYEIGESDFSWGSNIKSLILGNNRITSLKSHIFADLQQ 425

Query: 214 LQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMD 273
           L+ELSLSFN L++I+  S+ F   E L+ LE+SF L + ++ P+ I  K L  L+WL++D
Sbjct: 426 LKELSLSFNPLRVID--SSAFAGLEGLESLEVSFGL-DRDDLPHEIF-KPLTNLKWLSVD 481

Query: 274 NNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESD 333
           NNN   +  +SL +L  L Y+N+E NKI  I  NL    IH +LK+IRLSNN +  + +D
Sbjct: 482 NNNFDTVPEFSLDSLPELKYLNIESNKIRTIPINLLKPAIHSKLKDIRLSNNEISTVRTD 541

Query: 334 TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD 393
           TF +L  L T+ LS N +++I+  SF +L  +  ++L+ N I  ++  AF NLP+L KLD
Sbjct: 542 TFKSLNSLETVLLSNNRIRAIEADSFNDLPALNKLILANNLISKLHSRAFSNLPSLAKLD 601

Query: 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQE 453
           LQ+N L +F+   F+N+++   P++LNLS N I +   +D K   +++  +DL  N +  
Sbjct: 602 LQNNFLSEFSFGCFANLSA---PLHLNLSRNQIISC-NSDLKILNVHV--IDLRYNNLAR 655

Query: 454 VPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPN 513
           +P     T    L+KL+LDFN I  LD  +F +L  LE LSL+ NNI  V ++ F G+ N
Sbjct: 656 IPKCLENTAL--LKKLHLDFNIIARLDHNSFMHLTSLEQLSLQQNNIMSVSRKAFAGLQN 713

Query: 514 LQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKI 573
           LQI+DLS N +S L   QF    +LR+L++S N L  LP+DVF NT+IE LD+SYN   +
Sbjct: 714 LQILDLSKNLVSQLHPSQFANMPQLRVLDLSSNSLNYLPKDVFQNTVIEMLDLSYNSFSV 773

Query: 574 RPG 576
            P 
Sbjct: 774 VPS 776

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194760825|ref|XP_001962633.1| GF15558 [Drosophila ananassae] gi|190616330|gb|EDV31854.1| GF15558 [Drosophila ananassae]

 Score =  252 bits (644), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 164/392 (41%), Positives = 243/392 (61%), Gaps = 10/392 (2%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD-VFEKLQLLEIS 246
           SNL+T+LLR NKIT L+   F  L  +QE+SLSFN + I   +  VF+ V   L++LE+S
Sbjct: 512 SNLQTILLRNNKITHLHLGSFAGLDQIQEISLSFNDITIH--HPLVFENVSRTLKILELS 569

Query: 247 FSLFNSNEFP---YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK 303
           F++F +              L+ L WL +DNNN+K++ N S   +  L+YINL +N++  
Sbjct: 570 FAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKHVSNESFAQMRELSYINLSFNQLKA 629

Query: 304 IHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
           +   LF  +IH  L EI LS N LE +E++TF+NL +L T+ L  N L++I   +F+NL 
Sbjct: 630 LPKGLFQPDIHSHLVEIELSYNALERLEAETFHNLGDLQTLNLQSNRLRTISRHAFQNLE 689

Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
            +  I LS+N++  I   AF  LPNL  LDL  N+L   +L  F  +++  TP+ LNLS+
Sbjct: 690 FLRYIDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCSLSLKSFHYVSNTTTPLRLNLSH 749

Query: 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA 483
           N+I++   +D+  + +YI  LD+S+N + +   +     A++LR L L  N +  L + A
Sbjct: 750 NHISSF--DDELSSYMYIYQLDISHNHVAK--SDSFTNLANTLRFLNLAHNSLGALQSHA 805

Query: 484 FGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNI 543
           FG+L+ LE+L+L HNN+  + +R+F G+ +LQ +DLS N +  L  EQF    KLRIL I
Sbjct: 806 FGDLEFLEILNLAHNNLTSLRRRSFQGLNSLQELDLSHNILEQLQVEQFSNLKKLRILRI 865

Query: 544 SHNRLRSLPRDVFSNTIIEKLDISYNQDKIRP 575
           S NRLR+LPR+VF NT +E LDIS NQ  + P
Sbjct: 866 SSNRLRALPREVFMNTRLEFLDISDNQLSVWP 897

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195115565|ref|XP_002002327.1| GI17327 [Drosophila mojavensis] gi|193912902|gb|EDW11769.1| GI17327 [Drosophila mojavensis]

 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/392 (41%), Positives = 240/392 (61%), Gaps = 10/392 (2%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD-VFEKLQLLEIS 246
           +NL+T+LLR NKIT L+   F  L  +QE+SLSFN + I   +  VF+ V   L++LE+S
Sbjct: 517 ANLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDITIH--HPLVFENVSHTLKILELS 574

Query: 247 FSLFNSNEFP---YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK 303
           F++F +              L+ L WL +DNNN+K+I N S   +  L+YINL +N++  
Sbjct: 575 FAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKSISNESFAQMRELSYINLSFNQLKA 634

Query: 304 IHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
           +   LF  + H  L EI LS N LE +E  TF+NL +L T+ L  N L+SI   +F NL 
Sbjct: 635 LPQGLFLPDAHSHLVEIELSYNALERLEPQTFHNLGDLQTLNLQSNRLRSIARHAFYNLE 694

Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
            +  I LS+N++  I   AF  LPNL  LDL  N+L   +L  F  +++  TP+ LNLS+
Sbjct: 695 FLRYIDLSYNRLSNISHAAFTVLPNLAALDLMHNQLCSLSLKAFHYVSNATTPLRLNLSH 754

Query: 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA 483
           N+I++   +D+  + +YI  LD+S+N + +   +     A++LR L L  N +  L + A
Sbjct: 755 NHISHF--DDELSSYMYIYQLDISHNHVAK--SDSFTNLANTLRFLNLAHNMLGALQSHA 810

Query: 484 FGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNI 543
           FG+L+ LE+L+L HNN++ + +R+F G+ +LQ +DLS N++  L  EQF    KLRIL I
Sbjct: 811 FGDLEFLEILNLSHNNLSSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRI 870

Query: 544 SHNRLRSLPRDVFSNTIIEKLDISYNQDKIRP 575
             NRLR+LPR+VF NT +E LDIS NQ  I P
Sbjct: 871 CSNRLRALPREVFMNTRLEFLDISDNQLSIWP 902

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385595|ref|XP_002051490.1| GJ15952 [Drosophila virilis] gi|194147947|gb|EDW63645.1| GJ15952 [Drosophila virilis]

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 163/392 (41%), Positives = 239/392 (60%), Gaps = 10/392 (2%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD-VFEKLQLLEIS 246
           +NL+T+LLR NKIT L+   F  L  +QE+SLSFN + I   +  VF+ V   L++LE+S
Sbjct: 516 ANLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDITIH--HPLVFENVSHTLKILELS 573

Query: 247 FSLFNSNEFP---YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK 303
           F++F +              L+ L WL +DNNN+K I N S   +  L+YINL +N++  
Sbjct: 574 FAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKTISNESFAQMRELSYINLSFNQLKA 633

Query: 304 IHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
           +   LF  + H  L EI LS N LE +E  TF+NL +L T+ L  N L+SI   +F NL 
Sbjct: 634 LPRGLFLPDAHSHLVEIELSYNALERLEPQTFHNLGDLQTLNLQSNRLRSIARHAFHNLE 693

Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
            +  I LS+N++  I   AF  LPNL  LDL  N+L   +L  F  +++  TP+ LNLS+
Sbjct: 694 FLRYIDLSYNRLSNISHAAFTVLPNLAALDLMHNQLCAISLKSFHYVSNATTPLRLNLSH 753

Query: 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA 483
           N+I++   +D+  + +YI  LD+S+N + +   +     A++LR L L  N +  L + A
Sbjct: 754 NHISSF--DDELSSYMYIYQLDISHNHVAK--SDSFTNLANTLRFLNLAHNALGALQSHA 809

Query: 484 FGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNI 543
           FG+L+ LE+L+L HNN++ + +R+F G+ +LQ +DLS N++  L  EQF    KLRIL I
Sbjct: 810 FGDLEFLEILNLSHNNLSSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRI 869

Query: 544 SHNRLRSLPRDVFSNTIIEKLDISYNQDKIRP 575
             NRLR+LPR+VF NT +E LDIS NQ  + P
Sbjct: 870 CSNRLRALPREVFMNTRLEFLDISDNQLSVWP 901

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198476363|ref|XP_001357346.2| GA18003 [Drosophila pseudoobscura pseudoobscura] gi|198137660|gb|EAL34415.2| GA18003 [Drosophila pseudoobscura pseudoobscura]

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 164/393 (41%), Positives = 243/393 (61%), Gaps = 12/393 (3%)

Query: 188  SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD-VFEKLQLLEIS 246
            SNL+T+LLR NKIT L+   F  L  +QE+SLSFN + I   +  VF+ V   L++LE+S
Sbjct: 625  SNLQTILLRNNKITHLHLGSFAGLDQIQEISLSFNDITIH--HPLVFENVSRSLKILELS 682

Query: 247  FSLFNSNEF----PYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS 302
            F++F +       P   L   L+ L WL +DNNN+K+I N S   +  L+YINL +N++ 
Sbjct: 683  FAVFPARSLESLDPLEALLP-LSQLIWLGLDNNNLKSISNESFAQMRELSYINLSFNQLK 741

Query: 303  KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL 362
             +   LF  ++H  L EI LS N LE +ES TF+NL +L T+ L  N L++I   +F NL
Sbjct: 742  ALPRGLFMPDVHSHLVEIELSYNGLEHLESQTFHNLGDLQTLNLQSNRLRTIARHAFHNL 801

Query: 363  NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
              +  I LS N++  I   AF  LPNL  LDL  N+L   +L  F  +++  TP+ LN+S
Sbjct: 802  EFLRYIDLSHNRLVNISHAAFTVLPNLAALDLMHNQLCSLSLKSFHYVSNATTPLRLNMS 861

Query: 423  NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDAT 482
            +N+I++   +D+  + +YI  LD+S+N + +   +     A++LR L L  N +  L + 
Sbjct: 862  HNHISSF--DDELSSYMYIYQLDISHNHVAK--SDSFMNLANTLRFLNLAHNSLGALQSH 917

Query: 483  AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
            AFG+L+ LE+L+L +NN+  + +R+F G+ +LQ +DLS N++  L  EQF    KLRIL 
Sbjct: 918  AFGDLEFLEILNLAYNNLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILK 977

Query: 543  ISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRP 575
            IS NRLR+LPR+VF NT +E LDI+ NQ  + P
Sbjct: 978  ISSNRLRALPREVFMNTRLEFLDIADNQLSVWP 1010

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437135|ref|XP_002066500.1| GK18063 [Drosophila willistoni] gi|194162585|gb|EDW77486.1| GK18063 [Drosophila willistoni]

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 166/393 (42%), Positives = 239/393 (60%), Gaps = 12/393 (3%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD-VFEKLQLLEIS 246
           SNL+T+LLR NKIT L+   F  L  +QE+SLSFN + I   +  VF+ V   L++LE+S
Sbjct: 537 SNLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDITI--HHPLVFENVSRTLKILELS 594

Query: 247 FSLFNSNEF----PYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS 302
           F++F +       P   L   L+ L WL +DNNN+K I N S   +  L+YINL +N++ 
Sbjct: 595 FAVFPARSLESLDPLEALLP-LSQLIWLGLDNNNLKTISNESFSQMRELSYINLSFNQLK 653

Query: 303 KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL 362
            +   LF  +IH  L EI LS N LE +   TF+NL +L T+ L  N LKSI   +F NL
Sbjct: 654 MLPKGLFQPDIHSHLVEIELSYNALEHLAPQTFHNLGDLQTLNLQSNHLKSIARHAFHNL 713

Query: 363 NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
             +  I LS N++  I   AF  LPNL  LDL  N+L   +L  F  +++  TP+ LN+S
Sbjct: 714 EFLRYIDLSHNRLTNISHAAFTILPNLAALDLMHNQLCSLSLKSFHYVSNTTTPLRLNVS 773

Query: 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDAT 482
           +N++ N    D+  + +YI  LD+S+N I +   +     A++LR L L  N +  L + 
Sbjct: 774 HNHLANF--EDELSSYMYIYQLDISHNHISK--SDSFMNLANTLRFLNLAHNSLGSLQSH 829

Query: 483 AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
           AFG+L+ LE+L+L HNN++ + +R+F G+ +LQ +DLS N++  L  EQF    KLRIL+
Sbjct: 830 AFGDLEFLEILNLSHNNLSSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILH 889

Query: 543 ISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRP 575
           I  NRL++LPR+VF NT +E LDIS NQ  + P
Sbjct: 890 IGSNRLKALPREVFMNTRLEFLDISDNQLSVWP 922

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195155943|ref|XP_002018860.1| GL25723 [Drosophila persimilis] gi|194115013|gb|EDW37056.1| GL25723 [Drosophila persimilis]

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 162/392 (41%), Positives = 241/392 (61%), Gaps = 10/392 (2%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD-VFEKLQLLEIS 246
           SNL+T+LLR NKIT L+   F  L  +QE+SLSFN + I   +  VF+ V   L++LE+S
Sbjct: 517 SNLQTILLRNNKITHLHLGSFAGLDQIQEISLSFNDITIH--HPLVFENVSRSLKILELS 574

Query: 247 FSLFNSNEFP---YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK 303
           F++F +              L+ L WL +DNNN+K+I N S   +  L+YINL +N++  
Sbjct: 575 FAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKSISNESFAQMRELSYINLSFNQLKA 634

Query: 304 IHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
           +   LF  ++H  L EI LS N LE +ES TF+NL +L T+ L  N L++I   +F NL 
Sbjct: 635 LPRGLFMPDVHSHLVEIELSYNGLEHLESQTFHNLGDLQTLNLQSNRLRTIARHAFHNLE 694

Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
            +  I LS N++  I   AF  LPNL  LDL  N+L   +L  F  +++  TP+ LN+S+
Sbjct: 695 FLRYIDLSHNRLVNISHAAFTVLPNLAALDLMHNQLCSLSLKSFHYVSNATTPLRLNMSH 754

Query: 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA 483
           N+I++   +D+  + +YI  LD+S+N + +   +     A++LR L L  N +  L + A
Sbjct: 755 NHISSF--DDELSSYMYIYQLDISHNHVAK--SDSFMNLANTLRFLNLAHNSLGALQSHA 810

Query: 484 FGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNI 543
           FG+L+ LE+L+L +NN+  + +R+F G+ +LQ +DLS N++  L  EQF    KLRIL I
Sbjct: 811 FGDLEFLEILNLAYNNLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILKI 870

Query: 544 SHNRLRSLPRDVFSNTIIEKLDISYNQDKIRP 575
           S NRLR+LPR+VF NT +E LDI+ NQ  + P
Sbjct: 871 SSNRLRALPREVFMNTRLEFLDIADNQLSVWP 902

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195030254|ref|XP_001987983.1| GH10816 [Drosophila grimshawi] gi|193903983|gb|EDW02850.1| GH10816 [Drosophila grimshawi]

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 191/502 (38%), Positives = 286/502 (56%), Gaps = 30/502 (5%)

Query: 88  GLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLR 147
           GL D +E      LDL  N L+ + +A   S + +L++L  T   +R   LSNL +L   
Sbjct: 420 GLTDTLE-----YLDLERNHLTTVPVAI--STLHRLRYLYLT--SNRINQLSNLPSLTSN 470

Query: 148 CNKITDLNGNLFR---------HLQKSIVKAKKNNNNN-EDQVSDREKLLSNLETLLLRC 197
             K+  L+GN F          + Q S +    N+  +  + +   +   SNL+T+LLR 
Sbjct: 471 L-KVLSLSGNNFTMIPVLGLKNYTQLSYLNMGYNSIADIPEGIFAVDGWGSNLQTILLRN 529

Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD-VFEKLQLLEISFSLFNSNEFP 256
           NKIT L+   F  L  +QE+SLSFN + I   +  VF+ +   L++LE+SF++F +    
Sbjct: 530 NKITHLHLGSFAGLDQIQEISLSFNDITIH--HPLVFENISHTLKILELSFAVFPARSLE 587

Query: 257 ---YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI 313
                     L+ L WL +DNNN+K I N S   +  L+YINL +N++  + + LF    
Sbjct: 588 SLDPLDALLPLSQLIWLGLDNNNLKTISNESFAQMRELSYINLSFNQLKSLPHGLFLPEA 647

Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
           H  L EI LS N L+ +ES TF+NL +L T+ L  N L+SI   +F NL  +  I LS N
Sbjct: 648 HSHLVEIELSYNALDRLESQTFHNLGDLQTLNLQSNQLRSIARHAFHNLEFLRYIDLSHN 707

Query: 374 QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND 433
           ++  I   AF  LPNL  LDL  N+L   +L  F  +++  TP+ LNLS+N+I++   +D
Sbjct: 708 RLGNISHGAFTVLPNLGALDLMHNQLCALSLKSFHYVSNATTPLRLNLSHNHISSF--DD 765

Query: 434 KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELL 493
           +  + +YI  LD+S+N I +   +     A++LR L +  N +  L + AFG+L+ LE+L
Sbjct: 766 ELSSYMYIYQLDISHNHISK--SDSFTNLANTLRFLNVAHNSLGGLQSHAFGDLEFLEIL 823

Query: 494 SLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR 553
           +L HNN++ + +R+F G+ +LQ +DLS N++  L  EQF    KLRIL I  NRLR+LPR
Sbjct: 824 NLSHNNLSSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRICSNRLRALPR 883

Query: 554 DVFSNTIIEKLDISYNQDKIRP 575
           +VF NT +E LDIS NQ  + P
Sbjct: 884 EVFMNTRLEFLDISDNQLSVWP 905

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	584
FB|FBgn0028888	1443	CG4168 [Drosophila melanogaste	0.815	0.329	0.348	6.9e-65
FB|FBgn0000313	1315	chp "chaoptic" [Drosophila mel	0.626	0.278	0.301	2.7e-41
FB|FBgn0261269	1092	conv "convoluted" [Drosophila	0.869	0.465	0.262	4.4e-32
WB|WBGene00002282	773	let-4 [Caenorhabditis elegans	0.604	0.456	0.279	3.2e-27
RGD|68429	603	Igfals "insulin-like growth fa	0.503	0.487	0.310	2.1e-26
MGI|MGI:1921738	579	Lrrc15 "leucine rich repeat co	0.568	0.573	0.289	6.6e-26
UNIPROTKB|F1LRE2	602	Igfals "Insulin-like growth fa	0.503	0.488	0.306	7.7e-26
FB|FBgn0259677	1639	CG42346 [Drosophila melanogast	0.914	0.325	0.254	2.6e-25
MGI|MGI:107973	603	Igfals "insulin-like growth fa	0.489	0.474	0.306	6.3e-25
UNIPROTKB|Q8TF66	581	LRRC15 "Leucine-rich repeat-co	0.568	0.571	0.301	7.1e-25

FB|FBgn0028888 CG4168 [Drosophila melanogaster (taxid:7227)]

 Score = 655 (235.6 bits), Expect = 6.9e-65, Sum P(2) = 6.9e-65
 Identities = 176/505 (34%), Positives = 274/505 (54%)

Query:    86 PSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKXXXXXXXXX 145
             PS      E +E   LDL  N+L+ + +A     ++ L HL    L   +          
Sbjct:   517 PSAFEGLTETLEY--LDLERNRLTTVPVA-----LSSLHHLKYLYLTSNQISQLNNLPSF 569

Query:   146 XRCNKITDLNGNLF---------RHLQKSIVKAKKNNNNN-EDQVSDREKXXXXXXXXXX 195
                 ++  L+GN F          + Q S +    N+  +  + +   +           
Sbjct:   570 TENLRVLSLSGNNFSMIPVLGLKNYTQLSYLNMGYNSITDIPEGIFAVDSWGSNLQTILL 629

Query:   196 RCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD-VFEKLQLLEISFSLFNSNE 254
             R NKIT L+   F  L  +QE+SLSFN + I   +  VF+ V   L++LE+SF++F +  
Sbjct:   630 RNNKITHLHLGSFAGLEQIQEISLSFNDITIH--HPLVFENVSRTLKILELSFAVFPARS 687

Query:   255 F----PYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH 310
                  P   L   L+ L WL +DNNN+K + N S   +  L+YINL +N++  +   LF 
Sbjct:   688 LESLDPLDALLP-LSQLIWLGLDNNNLKQVSNESFAQMRELSYINLSFNQLKTLPRGLFQ 746

Query:   311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
              + H  L EI LS N LE +E+ TF++L +L T+ L  N L++I   +F NL  +  + L
Sbjct:   747 SDAHSHLVEIDLSYNGLERLEAQTFHSLGDLQTLNLQSNRLRTIARHAFHNLEFLRYLDL 806

Query:   371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
             S+N++  I   AF  LPNL  LDL  N+L   +L  F  +++  TP+ LN+S+N+I + Y
Sbjct:   807 SYNRLVNISHGAFTVLPNLAALDLMHNQLCSLSLKSFLYVSNTTTPLRLNVSHNHIASFY 866

Query:   431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL 490
               D+  + +YI  LD+S+N + +   +F    A++LR L L  N++  L + AFG+L+ L
Sbjct:   867 --DELSSYMYIYQLDISHNHVTKSD-SFTN-LANTLRFLNLAHNQLGSLQSHAFGDLEFL 922

Query:   491 ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
             E+L++ HNN+  + +R+F G+ +LQ +DLS N++  L  EQF    KLRIL I+ NRLR+
Sbjct:   923 EILNVAHNNLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRINSNRLRA 982

Query:   551 LPRDVFSNTIIEKLDISYNQDKIRP 575
             LPR+VF NT +E LDI+ NQ  + P
Sbjct:   983 LPREVFMNTRLEFLDIAENQLSVWP 1007

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

FB|FBgn0000313 chp "chaoptic" [Drosophila melanogaster (taxid:7227)]

 Score = 426 (155.0 bits), Expect = 2.7e-41, Sum P(2) = 2.7e-41
 Identities = 114/378 (30%), Positives = 196/378 (51%)

Query:   200 ITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI 259
             ++ +  + F+H+  L+ L  S N +  IE N    ++   L  L++S   ++ +  P   
Sbjct:   464 LSGIQSHAFKHVRGLKRLDFSENGISSIE-NDAFHEIGHSLISLKMSHG-YSGSALPAEP 521

Query:   260 LNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKE 319
             L ++L +L+ L   NN+I ++ + S + L +L  + L  N+I ++    F  +IH +L+E
Sbjct:   522 L-RHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEE 580

Query:   320 IRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIY 379
             I L  N+L  I   TF++L+ L  + L  N +  I+  +F NL+ +  + L  N+I  + 
Sbjct:   581 ISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLA 640

Query:   380 PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDK----- 434
               +F NLP L  LD+  N+L +FN + F  + +    +N+N+S+N I  L  N       
Sbjct:   641 DESFQNLPKLEILDMAFNQLPNFNFDYFDQVGTLSN-LNVNVSHNQIRQLMYNSSWSGRN 699

Query:   435 KQAPIY---IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE 491
             +   +Y   IK LDLS+N I  +   + +    SL  L+L +N + +     FGN+  L+
Sbjct:   700 EHGGMYHSNIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQ 759

Query:   492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
              L L +N I  +    F     LQ++    N +S +  + F     LRI++ SHN LR L
Sbjct:   760 WLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRGL 819

Query:   552 PRDVFSNTIIEKLDISYN 569
             P ++F N  +EKLD+S+N
Sbjct:   820 PDNLFYNGGMEKLDVSHN 837

GO:0005886 "plasma membrane" evidence=NAS;IDA

GO:0007156 "homophilic cell adhesion" evidence=NAS;IDA

GO:0042051 "compound eye photoreceptor development" evidence=NAS

GO:0042052 "rhabdomere development" evidence=IGI

GO:0016028 "rhabdomere" evidence=IDA

FB|FBgn0261269 conv "convoluted" [Drosophila melanogaster (taxid:7227)]

 Score = 379 (138.5 bits), Expect = 4.4e-32, P = 4.4e-32
 Identities = 146/556 (26%), Positives = 262/556 (47%)

Query:    45 KLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMT-LDL 103
             KL+ L++ G  L+ +  + F N+       L I++ QI++L +     I ++ ++   ++
Sbjct:   199 KLKTLDLHGNQLENLKRNQFKNLRELE--VLDISHNQIKKLEA---QHIADLTKLGWCNV 253

Query:   104 SHNKLSVLNMATLYSN-VTKLQHLGTTILKDREKXXXXXXXXXXRC----NKITDLNGNL 158
             SHN LS L+  T   N V K+ HL    +   +           R     N +TD+    
Sbjct:   254 SHNALSELSRGTFARNSVLKVLHLSHNQIARLDANSFRGMRFLRRLFLSDNVLTDIGRGT 313

Query:   159 FRHLQK--SIVKAKKNNNNNEDQVSDREKXXXXXXXXXXRCNKITDLNGNLFRHLYNLQE 216
             F  + +  +I  A+      E Q+  +              N IT +  N F+ +Y    
Sbjct:   314 FGSIARIGTIDLARNRLKKIEFQMFTQMNYVELLDLAE---NNITKIEKNSFKDIYQAI- 369

Query:   217 LSLSFNKLQIIELNSNVFDVFEKLQLLEISFS-LFNSNEFPYYILNKNLNTLEWLAMDNN 275
             +++S N L++IE  +  F+    + +L++S + L N +   +           +  +  N
Sbjct:   370 INVSHNALELIE--TAAFENCVNITVLDLSHNRLANFSRRSF----DETTFATYFQLSYN 423

Query:   276 NIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTF 335
             N+ N+    + N+T L  +N  YN I++I  N F   +++ L  I +S+N +  I +  F
Sbjct:   424 NLTNLAQIPIQNMTGLKVLNASYNSITEIPKNCFP-KLYE-LHTIDVSHNNISSIFNGVF 481

Query:   336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ 395
               L  L +I LS+N ++ IK+++F  L  +L + LS N++  +   +   L +L +L L 
Sbjct:   482 QTLFSLRSIDLSHNSMREIKSSTFGTLPTLLEMDLSHNELVSVVRGSLAKLTSLRQLYLN 541

Query:   396 DNKLKD------------FNLNVFSNITSKQTP-MN----LNLSNNYITNLYENDKKQAP 438
             +N+L+             F+ N  +NI S   P MN    L+LS+N + +    +     
Sbjct:   542 NNQLEKLFQLPISLNELYFSHNRLTNIPSGTWPVMNSLIYLDLSHNQLGDTLNGESFTGL 601

Query:   439 IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498
             + ++ L L NN I + P + +   + +L+ L+L+ N I  L+ +AFG L VL  L+L  N
Sbjct:   602 LVVQRLKLQNNGISQPPKDAVAVMS-TLQYLHLENNNITTLERSAFGKLPVLFELNLYGN 660

Query:   499 NIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD---V 555
              +  + KR F G+  L  ++LS N I  L  + F     LR L++S N L  L      V
Sbjct:   661 QVKDISKRAFEGLLQLLTLNLSSNGIQTLQNDIFVGLPSLRNLDLSFNSLTKLDNKTNGV 720

Query:   556 FSNTI-IEKLDISYNQ 570
               + + +E LD+S+N+
Sbjct:   721 LDDLLSLETLDLSHNR 736

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

WB|WBGene00002282 let-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 334 (122.6 bits), Expect = 3.2e-27, P = 3.2e-27
 Identities = 103/369 (27%), Positives = 189/369 (51%)

Query:   218 SLSFNKLQIIELNSNVFD-VFEKLQLLEISFSLFNS-NEFPYYILNKNLNTLEWLAMDNN 275
             SL+ N+ +++EL  N F  +F  ++ L++S +     ++  +  +N     LE + +++N
Sbjct:    66 SLTMNQAELVELPPNFFSGLF--IRRLDLSQNKIKKIDDAAFAGINP---VLEEVVLNHN 120

Query:   276 NIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTF 335
              I+ +   +L  L +L  ++L  N I +I       N++K L +I L +N +  I + TF
Sbjct:   121 LIEKVPAAALAGLPNLLRLDLSNNSIVEIQEQEIFPNLNK-LYDINLGSNKIFSIHTSTF 179

Query:   336 YNLKE-LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
              N+K  + TI L +N + ++ +++ + L  + ++ L  N+I+ +    F+NLP L  L+L
Sbjct:   180 QNVKNSIQTINLGHNNMTAVPSSAIRGLKQLQSLHLHKNRIEQLDALNFLNLPVLNLLNL 239

Query:   395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV 454
               N++ + N   F N+ S +    L LS N IT L    + Q    ++ LDL+NN I  +
Sbjct:   240 AGNQIHELNRQAFLNVPSLRY---LYLSGNKITKLTAY-QFQTFEQLEMLDLTNNEIGAI 295

Query:   455 PVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNL 514
             P N L      LR+LYL  N+I ++ + AF N  ++ L+ L  N +  +      G+PNL
Sbjct:   296 PANSLSGLKQ-LRQLYLAHNKISNISSNAFTNSSIVVLV-LSSNELKTLTAGIISGLPNL 353

Query:   515 QIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL-PRDVFSNTIIEKLDISYNQDKI 573
             Q +    N+I  +    FY +  L +L+++ N+L  + P    +   +  +D+S N+   
Sbjct:   354 QQVSFRDNQIKTINRNAFYDAASLVMLDLAKNQLTEIAPTTFLAQLNLLLVDLSENKLPK 413

Query:   574 RPGRESNPR 582
              P    N R
Sbjct:   414 TPYSAFNSR 422

GO:0016021 "integral to membrane" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI;IMP

GO:0002064 "epithelial cell development" evidence=IMP

GO:0035150 "regulation of tube size" evidence=IMP

GO:0045177 "apical part of cell" evidence=IDA

RGD|68429 Igfals "insulin-like growth factor binding protein, acid labile subunit" [Rattus norvegicus (taxid:10116)]

 Score = 324 (119.1 bits), Expect = 2.1e-26, P = 2.1e-26
 Identities = 94/303 (31%), Positives = 153/303 (50%)

Query:   262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
             +NL++L++L +  + ++++   +L  L +L Y++LE N++  +   LF       L  + 
Sbjct:    95 QNLSSLDFLNLQGSWLRSLEPQALLGLQNLYYLHLERNRLRNLAVGLFTHT--PSLASLS 152

Query:   322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
             LS+N L  +E   F  L  L  + L +N L  +  T F+ L N+  +VL+ N++ Y+ P 
Sbjct:   153 LSSNLLGRLEEGLFQGLSHLWDLNLGWNSLVVLPDTVFQGLGNLHELVLAGNKLTYLQPA 212

Query:   382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
              F  L  L +LDL  N L+    NVF ++   Q    L L  N IT +           +
Sbjct:   213 LFCGLGELRELDLSRNALRSVKANVFVHLPRLQ---KLYLDRNLITAVAPGAFLGMKA-L 268

Query:   442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
             + LDLS+NR+  +  +        L  L L  N I  L    F +L  LE L L HN I 
Sbjct:   269 RWLDLSHNRVAGLMEDTFPGLL-GLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIR 327

Query:   502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTII 561
              + +RTF G+  L+++ L+ N+I+ +    F   F + ++N+S N LRSLP  VF    +
Sbjct:   328 QLGERTFEGLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQG--L 385

Query:   562 EKL 564
             +KL
Sbjct:   386 DKL 388

GO:0005520 "insulin-like growth factor binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0042567 "insulin-like growth factor ternary complex" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1921738 Lrrc15 "leucine rich repeat containing 15" [Mus musculus (taxid:10090)]

 Score = 319 (117.4 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 100/345 (28%), Positives = 171/345 (49%)

Query:   219 LSFNKLQIIELNSNVFDVFEKLQLLEISFSL---FNSNEFPYYILN--KNLNTLEWLAMD 273
             L +N + +  LN+++ ++ E  + L IS  +      NE    +    +NL +L  L++ 
Sbjct:    51 LPWNAMSLQILNTHITELPED-KFLNISALIALKMEKNELANIMPGAFRNLGSLRHLSLA 109

Query:   274 NNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESD 333
             NN +KN+      ++ +L  + L  N++ +I      F+    LKE++L  N LE I   
Sbjct:   110 NNKLKNLPVRLFQDVNNLETLLLSNNQLVQIQPA--QFSQFSNLKELQLYGNNLEYIPEG 167

Query:   334 TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD 393
              F +L  L  + L  N    +    F++L N+  + L  N++  I    F  L NL +L 
Sbjct:   168 VFDHLVGLTKLNLGNNGFTHLSPRVFQHLGNLQVLRLYENRLSDIPMGTFDALGNLQELA 227

Query:   394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQE 453
             LQ+N++   +  +F N  + Q    L LSNN+I++L      Q P ++  L L  N ++E
Sbjct:   228 LQENQIGTLSPGLFHNNRNLQ---RLYLSNNHISHLPPGIFMQLP-HLNKLTLFGNSLKE 283

Query:   454 VPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPN 513
             +         + LR+L+L  N I  L   AF +L+ L++L L HN ++ +    F G+ N
Sbjct:   284 LSPGVFGPMPN-LRELWLYNNHITSLPDNAFSHLNQLQVLILSHNQLSYISPGAFNGLTN 342

Query:   514 LQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
             L+ + L  N +  L G  F     LR +++ +NRLR LP  +F+N
Sbjct:   343 LRELSLHTNALQDLDGNVFRSLANLRNVSLQNNRLRQLPGSIFAN 387

GO:0005622 "intracellular" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1LRE2 Igfals "Insulin-like growth factor-binding protein complex acid labile subunit" [Rattus norvegicus (taxid:10116)]

 Score = 319 (117.4 bits), Expect = 7.7e-26, P = 7.7e-26
 Identities = 93/303 (30%), Positives = 153/303 (50%)

Query:   262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
             +NL++L++L +  + ++++   +L  L +L +++LE N++  +   LF       L  + 
Sbjct:    94 QNLSSLDFLNLQGSWLRSLEPQALLGLQNLYHLHLERNRLRNLAVGLFTHT--PSLASLS 151

Query:   322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
             LS+N L  +E   F  L  L  + L +N L  +  T F+ L N+  +VL+ N++ Y+ P 
Sbjct:   152 LSSNLLGRLEEGLFQGLSHLWDLNLGWNSLVVLPDTVFQGLGNLHELVLAGNKLTYLQPA 211

Query:   382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
              F  L  L +LDL  N L+    NVF ++   Q    L L  N IT +           +
Sbjct:   212 LFCGLGELRELDLSRNALRSVKANVFVHLPRLQ---KLYLDRNLITAVAPRAFLGMKA-L 267

Query:   442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
             + LDLS+NR+  +  +        L  L L  N I  L    F +L  LE L L HN I 
Sbjct:   268 RWLDLSHNRVAGLMEDTFPGLL-GLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIR 326

Query:   502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTII 561
              + +RTF G+  L+++ L+ N+I+ +    F   F + ++N+S N LRSLP  VF    +
Sbjct:   327 QLGERTFEGLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQG--L 384

Query:   562 EKL 564
             +KL
Sbjct:   385 DKL 387

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0259677 CG42346 [Drosophila melanogaster (taxid:7227)]

 Score = 322 (118.4 bits), Expect = 2.6e-25, P = 2.6e-25
 Identities = 146/574 (25%), Positives = 245/574 (42%)

Query:    19 YSNVTKLQHLGTTILKGDQLQGIF---NSKLRELEITGKDLKFIDPSAFDNIDACYDLTL 75
             +  +  +QH+     +   L+ IF   NS L  +++    L  + P  F        + L
Sbjct:   517 FHTLENMQHINLQDNQLTVLEDIFPDENSSLLSVQLEANYLHKVHPRTFSRQQKVQIMWL 576

Query:    76 KITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTT------ 129
             K  + Q+  +    F     + +  L LS NK+  +   T + N+  LQ L  +      
Sbjct:   577 K--DNQLTRVERSFFADTPQLGR--LYLSDNKIRDIEKDT-FVNLLLLQFLDLSGNQLRQ 631

Query:   130 ILKDREKXXXXXXXXXXRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDR-EKXXX 188
             + +D               N I  + G  F  L K++     ++N       D       
Sbjct:   632 LRRDYFAPLQDLEELSLARNHIEAIEGYAFAKL-KNLKSLDLSHNPLVQLTRDIFSNEFP 690

Query:   189 XXXXXXXRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS 248
                     C+ +  L  + F+ L NL EL+L  N+L   ++ +       +L L   +FS
Sbjct:   691 LNSLNLGNCS-LRKLEQHAFKSLTNLNELNLERNQLNPADIQTLDIPNLRRLLLSHNNFS 749

Query:   249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
                S      +L++ L +L+ L+M N ++  I +      T+L  ++L  N++++I+ N+
Sbjct:   750 YAGSVGIMAGMLDR-LRSLQQLSMSNCSLGQIPDLLFAKNTNLVRLDLCDNRLTQINRNI 808

Query:   309 FH-FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
             F   N+    KE+RL  N L        YNL  L ++ L+ N L SI         N+  
Sbjct:   809 FSGLNV---FKELRLCRNELSDFPHIALYNLSTLESLDLARNQLASIDFFKLSGTLNLRQ 865

Query:   368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
             ++L  N+I  +     VNL  L  +DL  N L     N   +  + Q    ++LSNN   
Sbjct:   866 LILRDNKITALSGFNAVNLTQLDSVDLSGNLLLSLPANFLRHSINLQ---KVHLSNNRFL 922

Query:   428 NLYENDKKQAPI-YIKSLDLSNNRIQEVPVNFLQTFADS----LRKLYLDFNEIKHLDAT 482
              +  +      I  +  L+L+ N     P+N + T  +     L++LY+    +  L + 
Sbjct:   923 QIPSSALSDVSIPRLSWLNLTGN-----PINRIYTVKEERYPYLKELYICQTNLSILTSK 977

Query:   483 AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
              F     L+ L L +N I  +    F  + NL  +DLS NE+ ML  E+      LR LN
Sbjct:   978 DFEAFQALQHLHLVNNRITRISPGAFKSLTNLLTLDLSVNELEMLPKERLQGLRLLRFLN 1037

Query:   543 ISHNRLRSLPRDVFSNTIIEK--LDISYNQ-DKI 573
             ISHN L+ L  + FS  ++E   LD+S+NQ D+I
Sbjct:  1038 ISHNTLKDL--EEFSVDLLEMQTLDLSFNQLDRI 1069

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:107973 Igfals "insulin-like growth factor binding protein, acid labile subunit" [Mus musculus (taxid:10090)]

 Score = 311 (114.5 bits), Expect = 6.3e-25, P = 6.3e-25
 Identities = 91/297 (30%), Positives = 147/297 (49%)

Query:   262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
             +NL++L++L +  + ++++   +L  L +L +++LE N +  +   LF       L  + 
Sbjct:    95 QNLSSLDFLNLQGSWLRSLEPQALLGLQNLYHLHLERNLLRSLAAGLFRHT--PSLASLS 152

Query:   322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
             L NN L  +E   F  L  L  + L +N L  +  T F+ L N+  +VL+ N++ Y+ P 
Sbjct:   153 LGNNLLGRLEEGLFRGLSHLWDLNLGWNSLVVLPDTVFQGLGNLHELVLAGNKLTYLQPA 212

Query:   382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
                 L  L +LDL  N L+    NVF ++   Q    L L  N IT +           +
Sbjct:   213 LLCGLGELRELDLSRNALRSVKANVFIHLPRLQ---KLYLDRNLITAVAPRAFLGMKA-L 268

Query:   442 KSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNN 499
             + LDLS+NR+  +      TF     L  L L  N I  L    F +L  LE L L HN 
Sbjct:   269 RWLDLSHNRVAGL---LEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNR 325

Query:   500 IAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
             I  + ++TF G+  L+++ L+ N+I  +    F+  F + ++N+S N LRSLP  VF
Sbjct:   326 IRQLGEKTFEGLGQLEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVF 382

GO:0005515 "protein binding" evidence=IPI

GO:0005520 "insulin-like growth factor binding" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0042567 "insulin-like growth factor ternary complex" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|Q8TF66 LRRC15 "Leucine-rich repeat-containing protein 15" [Homo sapiens (taxid:9606)]

 Score = 310 (114.2 bits), Expect = 7.1e-25, P = 7.1e-25
 Identities = 103/342 (30%), Positives = 162/342 (47%)

Query:   217 LSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNN 276
             +SL      I ELN + F     L  L I  +   S   P     +NL +L +L++ NN 
Sbjct:    56 MSLQILNTHITELNESPFLNISALIALRIEKNEL-SRITPGAF--RNLGSLRYLSLANNK 112

Query:   277 IKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFY 336
             ++ +       L SL  + L  N++ +I     HF+    LKE++L  N+LE I    F 
Sbjct:   113 LQVLPIGLFQGLDSLESLLLSSNQLLQIQPA--HFSQCSNLKELQLHGNHLEYIPDGAFD 170

Query:   337 NLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD 396
             +L  L  + L  N L  I    F++L N+  + L  N++  I    F  L NL +L LQ 
Sbjct:   171 HLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQ 230

Query:   397 NKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV 456
             N++   +  +F N  + Q    L LSNN+I+ L  +   Q P  +  L L  N ++E+  
Sbjct:   231 NQIGLLSPGLFHNNHNLQ---RLYLSNNHISQLPPSVFMQLP-QLNRLTLFGNSLKELSP 286

Query:   457 NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQI 516
                    + LR+L+L  N I  L    F NL  L++L L  N I+ +    F G+  L+ 
Sbjct:   287 GIFGPMPN-LRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRE 345

Query:   517 IDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
             + L  N +  L G  F     L+ +++ +NRLR LP ++F+N
Sbjct:   346 LSLHTNALQDLDGNVFRMLANLQNISLQNNRLRQLPGNIFAN 387

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	584
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-08
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 4e-11
 Identities = 127/469 (27%), Positives = 201/469 (42%), Gaps = 40/469 (8%)

Query: 100 TLDLSHNKLS--VLNMATLYSNVTKLQHLGTTILKDREKL----LSNLETLLLRCNKITD 153
           TLDLS+N LS  + N    +S++ K+  LG  +L  +       L++LE L L  N++  
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSL-KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV- 201

Query: 154 LNGNLFRHL--QKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHL 211
             G + R L   KS+       NN   ++      L++L  L L  N +T    +   +L
Sbjct: 202 --GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259

Query: 212 YNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS-LFNSNEFPYYILNKNLNTLEWL 270
            NLQ L L  NKL      S    +F   +L+ +  S    S E P  ++   L  LE L
Sbjct: 260 KNLQYLFLYQNKLSGPIPPS----IFSLQKLISLDLSDNSLSGEIPELVIQ--LQNLEIL 313

Query: 271 AMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLEL 329
            + +NN       +L +L  L  + L  NK S +I  NL     H  L  + LS N L  
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL---GKHNNLTVLDLSTNNLTG 370

Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
              +   +   L  + L  N L+     S     ++  + L  N      P+ F  LP +
Sbjct: 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430

Query: 390 VKLDLQDNKLKDFNLNVFSNITSKQTPMN----LNLS-NNYITNLYENDKKQAPIYIKSL 444
             LD+ +N L+         I S++  M     L+L+ N +   L ++   +    +++L
Sbjct: 431 YFLDISNNNLQ-------GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR---LENL 480

Query: 445 DLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV 504
           DLS N+        L + ++ L +L L  N++         +   L  L L HN ++  +
Sbjct: 481 DLSRNQFSGAVPRKLGSLSE-LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539

Query: 505 KRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR-SLP 552
             +F  MP L  +DLS N++S    +       L  +NISHN L  SLP
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 111/437 (25%), Positives = 185/437 (42%), Gaps = 70/437 (16%)

Query: 187 LSNLETLLLRCNKITDLNGNLFR-HLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           + NLETL        DL+ N+    + N  ++  SF+ L++++L  NV        L  +
Sbjct: 139 IPNLETL--------DLSNNMLSGEIPN--DIG-SFSSLKVLDLGGNVLVGKIPNSLTNL 187

Query: 246 S---FSLFNSNEFPYYILNK--NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK 300
           +   F    SN+    I  +   + +L+W+ +  NN+     Y +  LTSLN+++L YN 
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247

Query: 301 IS-KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSF 359
           ++  I ++L +    K L+ + L  N L      + ++L++L ++ LS N L        
Sbjct: 248 LTGPIPSSLGNL---KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304

Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLP------------------------NLVKLDLQ 395
             L N+  + L  N      P A  +LP                        NL  LDL 
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 396 DNKLKD------------FNLNVFSNITSKQTPMNLN---------LSNNYITNLYENDK 434
            N L              F L +FSN    + P +L          L +N  +    ++ 
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424

Query: 435 KQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLS 494
            + P+ +  LD+SNN +Q   +N  +    SL+ L L  N+       +FG+   LE L 
Sbjct: 425 TKLPL-VYFLDISNNNLQG-RINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLD 481

Query: 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554
           L  N  +  V R    +  L  + LS N++S    ++     KL  L++SHN+L      
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Query: 555 VFSN-TIIEKLDISYNQ 570
            FS   ++ +LD+S NQ
Sbjct: 542 SFSEMPVLSQLDLSQNQ 558

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 103/411 (25%), Positives = 183/411 (44%), Gaps = 43/411 (10%)

Query: 187 LSNLETLLLRCNKIT-DLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L  ++T+ L  N+++  +  ++F    +L+ L+LS N         ++ +    L+ L++
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN----LETLDL 147

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK-ISKI 304
           S ++  S E P  I   + ++L+ L +  N +      SL NLTSL ++ L  N+ + +I
Sbjct: 148 SNNML-SGEIPNDI--GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 305 HNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN 364
              L      K LK I L  N L          L  LN + L YN L     +S  NL N
Sbjct: 205 PRELGQM---KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN-----------KLKDFN-LNVFSNITS 412
           +  + L  N++    P +  +L  L+ LDL DN           +L++   L++FSN  +
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321

Query: 413 KQTPMNLN----------LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ-EVPVNFLQT 461
            + P+ L            SN +   + +N  K   + +  LDLS N +  E+P    + 
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV--LDLSTNNLTGEIP----EG 375

Query: 462 FADS--LRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519
              S  L KL L  N ++     + G    L  + L+ N+ +  +   F  +P +  +D+
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435

Query: 520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
           S N +      + +    L++L+++ N+      D F +  +E LD+S NQ
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
           +L+ L L  N +  +   AF  L  L++L L  NN+  +    F G+P+L+ +DLS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 9e-08
 Identities = 25/59 (42%), Positives = 32/59 (54%)

Query: 341 LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
           L ++ LS N L  I   +FK L N+  + LS N +  I P AF  LP+L  LDL  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 275 NNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDT 334
           +++ +I  Y+    TSL  I L  + ++ I +  F+      L  I + ++ L  I    
Sbjct: 20  SSVTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCSS--LTSITIPSS-LTSIGEYA 75

Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
           F N   L +IT+  N L +I + +F N  ++ +I +  + +  I   AF N  +L
Sbjct: 76  FSNCSSLTSITIPSN-LTTIGSYAFSN-CSLKSITIPSS-VTTIGDYAFSNCSSL 127

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
            LK + LSNN L +I    F  L  L  + LS N L SI   +F  L ++ ++ LS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
           +KSLDLSNNR+  +P    +    +L+ L L  N +  +   AF  L  L  L L  NN+
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGL-PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 25/85 (29%)

Query: 140 NLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNK 199
           NL++L L  N++T +    F+ L                          NL+ L L  N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGL-------------------------PNLKVLDLSGNN 35

Query: 200 ITDLNGNLFRHLYNLQELSLSFNKL 224
           +T ++   F  L +L+ L LS N L
Sbjct: 36  LTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 490 LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
           L+ L L +N + V+    F G+PNL+++DLS N ++ ++ E F     LR L++S N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 9e-05
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 267 LEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNY 326
           L+ L + NN +  I + +   L +L  ++L  N ++ I    F       L+ + LS N 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGL--PSLRSLDLSGNN 59

Query: 327 L 327
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 9e-05
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
           ++ LS N++  I   AF  LPNL  LDL  N L   +   FS + S +   +L+LS N +
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLR---SLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 189 NLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS 248
           NL++L L  N++T +    F+ L NL+ L LS N L  I  +   F     L+ L++S +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSI--SPEAFSGLPSLRSLDLSGN 58

Query: 249 LF 250
             
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 81/312 (25%), Positives = 133/312 (42%), Gaps = 15/312 (4%)

Query: 112 NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKK 171
           N+ ++  N   L     T+L     L   L   LL  + I+ L+G+        +     
Sbjct: 41  NLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDL 100

Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNS 231
           N N            L+NL +L L  N ITD+   +     NL+EL LS NK++ +    
Sbjct: 101 NLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL 159

Query: 232 NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
                   L+ L++SF+  +        L  NL+ L  L +  N I ++    +  L++L
Sbjct: 160 RNLP---NLKNLDLSFNDLSDLPK----LLSNLSNLNNLDLSGNKISDLPP-EIELLSAL 211

Query: 292 NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL 351
             ++L  N I ++ ++L +    K L  + LSNN LE +  ++  NL  L T+ LS N +
Sbjct: 212 EELDLSNNSIIELLSSLSNL---KNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQI 267

Query: 352 KSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNIT 411
            SI  +S  +L N+  + LS N +    P   + L  L  L      LK   L + S + 
Sbjct: 268 SSI--SSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILL 325

Query: 412 SKQTPMNLNLSN 423
           +     N   S+
Sbjct: 326 NNNILSNGETSS 337

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 513 NLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI-IEKLDISYNQ 570
           NL+ +DLS N ++++    F     L++L++S N L S+  + FS    +  LD+S N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 290 SLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
           +L  ++L  N+++ I +  F       LK + LS N L  I  + F  L  L ++ LS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGL--PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 350 LL 351
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
           I    FYN   L +IT+  ++  SI   +F    ++ +I L  + +  I   AF N  +L
Sbjct: 3   IGDYAFYNCS-LTSITIPSSV-TSIGEYAFSGCTSLKSITLP-SSLTSIGSYAFYNCSSL 59

Query: 390 VKLDLQDNKLKDFNLNVFSNITS 412
             + +  + L       FSN +S
Sbjct: 60  TSITIPSS-LTSIGEYAFSNCSS 81

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	584
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194|consensus	873		100.0
KOG4194|consensus	873		100.0
KOG0472|consensus	565		100.0
KOG0472|consensus	565		100.0
KOG0618|consensus	1081		99.97
KOG0618|consensus	1081		99.96
KOG0444|consensus	1255		99.96
KOG0444|consensus	1255		99.94
KOG4237|consensus	498		99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG4237|consensus	498		99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.66
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
KOG0617|consensus	264		99.51
KOG0617|consensus	264		99.45
KOG1909|consensus	382		99.3
KOG1909|consensus	382		99.3
KOG3207|consensus	505		99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG1259|consensus	490		99.11
KOG3207|consensus	505		99.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.94
KOG1259|consensus	490		98.94
KOG0532|consensus	722		98.91
KOG0532|consensus	722		98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
PLN03150	623	hypothetical protein; Provisional	98.83
KOG4658|consensus	889		98.8
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.77
KOG4658|consensus	889		98.76
KOG2120|consensus	419		98.75
KOG2120|consensus	419		98.72
KOG0531|consensus	414		98.61
PLN03150	623	hypothetical protein; Provisional	98.6
KOG0531|consensus	414		98.6
KOG4341|consensus	483		98.54
KOG4341|consensus	483		98.49
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.41
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.36
KOG1859|consensus	1096		98.26
KOG1859|consensus	1096		98.25
KOG2982|consensus	418		98.21
KOG4579|consensus	177		98.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.16
KOG4579|consensus	177		98.16
KOG2982|consensus	418		98.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.06
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.06
KOG1644|consensus	233		98.03
KOG1644|consensus	233		97.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.86
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG3665|consensus	699		97.68
KOG3665|consensus	699		97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.55
KOG2123|consensus	388		97.19
KOG1947|consensus	482		96.85
KOG2123|consensus	388		96.84
KOG2739|consensus	260		96.59
KOG4308|consensus	478		96.59
KOG2739|consensus	260		96.54
KOG1947|consensus	482		96.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.94
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.92
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.77
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.61
smart00370	26	LRR Leucine-rich repeats, outliers.	95.36
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.36
KOG4308|consensus	478		95.18
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.66
smart00370	26	LRR Leucine-rich repeats, outliers.	94.66
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.04
KOG3864|consensus	221		90.77
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.83
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.9
KOG0473|consensus	326		82.94
KOG3864|consensus	221		82.74
KOG0473|consensus	326		82.06

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.4e-50  Score=453.82  Aligned_cols=503  Identities=25%  Similarity=0.235  Sum_probs=261.1

Q ss_pred             ccccCCCccceeccccccccchhhhccccccccccccc-cccc------ccceeeeecCCceeecCCccccccccceeeE
Q psy11648          2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ-GIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLT   74 (584)
Q Consensus         2 ~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~-~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~   74 (584)
                      .|||++|.+++..+.+    +..+++||+|++++|+++ .+|.      ++|++|++++|.+.+..+.  ..+ ++|+ +
T Consensus        73 ~L~L~~~~i~~~~~~~----~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l-~~L~-~  144 (968)
T PLN00113         73 SIDLSGKNISGKISSA----IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI-PNLE-T  144 (968)
T ss_pred             EEEecCCCccccCChH----HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--ccc-CCCC-E
Confidence            4666666666655543    456666666677777665 3543      6677777777766554332  223 5666 7


Q ss_pred             EEecCcccc-cccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecccccccc
Q psy11648         75 LKITNTQIE-ELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITD  153 (584)
Q Consensus        75 L~ls~n~i~-~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~  153 (584)
                      |++++|.+. .+|..+.. ..+|+  +|++++|.+.+.                   +|..+.++++|++|++++|.+.+
T Consensus       145 L~Ls~n~~~~~~p~~~~~-l~~L~--~L~L~~n~l~~~-------------------~p~~~~~l~~L~~L~L~~n~l~~  202 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGS-FSSLK--VLDLGGNVLVGK-------------------IPNSLTNLTSLEFLTLASNQLVG  202 (968)
T ss_pred             EECcCCcccccCChHHhc-CCCCC--EEECccCccccc-------------------CChhhhhCcCCCeeeccCCCCcC
Confidence            777777665 44444333 33377  777777666543                   33445555667777777766655


Q ss_pred             ccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCc
Q psy11648        154 LNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSN  232 (584)
Q Consensus       154 ~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  232 (584)
                      ..+..+.. .++|+.|+++ +......+..+. .+++|++|++++|.+.+..+..++++++|++|++++|.+.+.  .+.
T Consensus       203 ~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~  278 (968)
T PLN00113        203 QIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP--IPP  278 (968)
T ss_pred             cCChHHcC-cCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc--Cch
Confidence            43332221 2334444444 222223333443 455555555555555554455555555555555555555443  444


Q ss_pred             cccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCccccccccccc
Q psy11648        233 VFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFN  312 (584)
Q Consensus       233 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~  312 (584)
                      .+..+++|++|++++|.+. +.+|..+  ..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+.. 
T Consensus       279 ~l~~l~~L~~L~Ls~n~l~-~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-  354 (968)
T PLN00113        279 SIFSLQKLISLDLSDNSLS-GEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-  354 (968)
T ss_pred             hHhhccCcCEEECcCCeec-cCCChhH--cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-
Confidence            5555555555555555554 4444443  45555555555555555444445555555555555555554222222222 


Q ss_pred             ccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEE
Q psy11648        313 IHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL  392 (584)
Q Consensus       313 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  392 (584)
                       +++|+.|++++|.+.+..+..+..++.++.+++++|.+.+..+..+..+++|+.+++++|.+++..|..+..++.|+.+
T Consensus       355 -~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  433 (968)
T PLN00113        355 -HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL  433 (968)
T ss_pred             -CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence             4555555555555555444445555555555555555555555555555555555555555555445555555555555


Q ss_pred             ecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEcc
Q psy11648        393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLD  472 (584)
Q Consensus       393 ~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  472 (584)
                      ++++|.+.+..+..+.   ..+.|+.+++++|.+....+...  ..++|+.|++++|++....+..+..+ ++|+.|+++
T Consensus       434 ~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~Ls  507 (968)
T PLN00113        434 DISNNNLQGRINSRKW---DMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSL-SELMQLKLS  507 (968)
T ss_pred             ECcCCcccCccChhhc---cCCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCccChhhhhh-hccCEEECc
Confidence            5555555543332221   22344555555554443222211  12445555555555443333344444 455555555


Q ss_pred             CCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        473 FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       473 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      +|++.+..+..+..+++|++|++++|.+++.+|..|..+++|+.|++++|++.+..|..+..+++|++|++++|++.
T Consensus       508 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             CCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence            55554444444445555555555555555555555555555555555555555444444444555555555555444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.7e-48  Score=436.83  Aligned_cols=504  Identities=20%  Similarity=0.182  Sum_probs=410.0

Q ss_pred             CccccCCCccceeccccccccchhhhcccccccccccccc-ccc---ccceeeeecCCceeecCCccccccccceeeEEE
Q psy11648          1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQG-IFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLK   76 (584)
Q Consensus         1 ~~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~-l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~   76 (584)
                      +.|+|++|++++..+.++   +..+++||+|++++|.+++ +|.   ++|++|++++|.+.+..+..+.++ ++|+ +|+
T Consensus        96 ~~L~Ls~n~~~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~-~L~  170 (968)
T PLN00113         96 QTINLSNNQLSGPIPDDI---FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF-SSLK-VLD  170 (968)
T ss_pred             CEEECCCCccCCcCChHH---hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC-CCCC-EEE
Confidence            578999999986555442   4478899999999999986 665   999999999999998888889888 8999 999


Q ss_pred             ecCcccc-cccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecccccccccc
Q psy11648         77 ITNTQIE-ELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLN  155 (584)
Q Consensus        77 ls~n~i~-~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~  155 (584)
                      +++|.+. .+|..+....+ |+  +|++++|.+.+..+..++.+                   ++|++|++++|.+.+..
T Consensus       171 L~~n~l~~~~p~~~~~l~~-L~--~L~L~~n~l~~~~p~~l~~l-------------------~~L~~L~L~~n~l~~~~  228 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTS-LE--FLTLASNQLVGQIPRELGQM-------------------KSLKWIYLGYNNLSGEI  228 (968)
T ss_pred             CccCcccccCChhhhhCcC-CC--eeeccCCCCcCcCChHHcCc-------------------CCccEEECcCCccCCcC
Confidence            9999987 56665555554 99  99999999887655555444                   44555555544444433


Q ss_pred             ccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccc
Q psy11648        156 GNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF  234 (584)
Q Consensus       156 ~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  234 (584)
                      +..+.. .++|++|+++ +......+..+. .+++|+.|++++|.+.+..+..+.++++|++|++++|.+.+.  .+..+
T Consensus       229 p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~~  304 (968)
T PLN00113        229 PYEIGG-LTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE--IPELV  304 (968)
T ss_pred             ChhHhc-CCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC--CChhH
Confidence            332221 2344444444 222333455665 789999999999999988888899999999999999998776  78889


Q ss_pred             cccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCccccccccccccc
Q psy11648        235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIH  314 (584)
Q Consensus       235 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~  314 (584)
                      ..+++|+.|++++|.+. +.+|..+  ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..  +
T Consensus       305 ~~l~~L~~L~l~~n~~~-~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~--~  379 (968)
T PLN00113        305 IQLQNLEILHLFSNNFT-GKIPVAL--TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS--S  379 (968)
T ss_pred             cCCCCCcEEECCCCccC-CcCChhH--hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC--c
Confidence            99999999999999987 6777776  79999999999999999877778999999999999999988443333333  7


Q ss_pred             CCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEec
Q psy11648        315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL  394 (584)
Q Consensus       315 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  394 (584)
                      ++|+.+++++|.+.+..+..+..+++|+.+++++|.+++..+..+..++.|+.+++++|.+.+..+..+..+++|+.|++
T Consensus       380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  459 (968)
T PLN00113        380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL  459 (968)
T ss_pred             CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence            89999999999999888888999999999999999999888888999999999999999999988888889999999999


Q ss_pred             CCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCC
Q psy11648        395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN  474 (584)
Q Consensus       395 ~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n  474 (584)
                      ++|.+.+..+..+    ....++.|++++|.+....+.. +..+++|+.|++++|.+....+..+..+ ++|++|++++|
T Consensus       460 ~~n~~~~~~p~~~----~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N  533 (968)
T PLN00113        460 ARNKFFGGLPDSF----GSKRLENLDLSRNQFSGAVPRK-LGSLSELMQLKLSENKLSGEIPDELSSC-KKLVSLDLSHN  533 (968)
T ss_pred             cCceeeeecCccc----ccccceEEECcCCccCCccChh-hhhhhccCEEECcCCcceeeCChHHcCc-cCCCEEECCCC
Confidence            9999877655443    3468899999999998655433 3357899999999999885555777787 99999999999


Q ss_pred             cccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCc
Q psy11648        475 EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNR  547 (584)
Q Consensus       475 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~  547 (584)
                      .+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+..|.. ..+..+....+.+|.
T Consensus       534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            999998999999999999999999999999999999999999999999999766643 223344445555663

>KOG4194|consensus

Probab=100.00  E-value=1.1e-38  Score=303.99  Aligned_cols=296  Identities=27%  Similarity=0.413  Sum_probs=146.2

Q ss_pred             ccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCC
Q psy11648        187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNT  266 (584)
Q Consensus       187 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~  266 (584)
                      ++.|+.||++.|.+..+....|..-.++++|++++|+++..  ....|..+.+|..|.++.|.++  .+|...| +++++
T Consensus       148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l--~~~~F~~lnsL~tlkLsrNrit--tLp~r~F-k~L~~  222 (873)
T KOG4194|consen  148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL--ETGHFDSLNSLLTLKLSRNRIT--TLPQRSF-KRLPK  222 (873)
T ss_pred             HhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc--ccccccccchheeeecccCccc--ccCHHHh-hhcch
Confidence            34455555555555444444444444555555555555544  3344444445555555555443  4555544 45555


Q ss_pred             CCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEc
Q psy11648        267 LEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITL  346 (584)
Q Consensus       267 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  346 (584)
                      |+.|++..|.+.......|..+++|+.|.+..|.+..+....|..  +.++++|++..|++..+..+++.++..|+.|++
T Consensus       223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~--l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l  300 (873)
T KOG4194|consen  223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG--LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL  300 (873)
T ss_pred             hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee--ecccceeecccchhhhhhcccccccchhhhhcc
Confidence            555555555555443335555556666666555555555544443  444444444444444444444444444444444


Q ss_pred             cCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcc
Q psy11648        347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI  426 (584)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l  426 (584)
                      ++|.|..+..+.+..+++|+.|++++|.++...++.+..+..|++|.++.|.+.......|..                 
T Consensus       301 S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~-----------------  363 (873)
T KOG4194|consen  301 SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG-----------------  363 (873)
T ss_pred             chhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH-----------------
Confidence            444444444444444444444444444444444444444444444444444444333333322                 


Q ss_pred             ccccccccccccCcccEEEccCCCCC---CCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccc
Q psy11648        427 TNLYENDKKQAPIYIKSLDLSNNRIQ---EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV  503 (584)
Q Consensus       427 ~~~~~~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  503 (584)
                                 .++|++|+++.|.+.   +-....|.++ ++|++|++.+|++..++..+|.++++|++||+.+|.|..+
T Consensus       364 -----------lssL~~LdLr~N~ls~~IEDaa~~f~gl-~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI  431 (873)
T KOG4194|consen  364 -----------LSSLHKLDLRSNELSWCIEDAAVAFNGL-PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI  431 (873)
T ss_pred             -----------hhhhhhhcCcCCeEEEEEecchhhhccc-hhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence                       244444444444432   1112334454 5555555555555555555555555555555555555555


Q ss_pred             cccccCCCCCccEEEC
Q psy11648        504 VKRTFIGMPNLQIIDL  519 (584)
Q Consensus       504 ~~~~~~~~~~L~~L~l  519 (584)
                      .+.+|+.+ .|++|.+
T Consensus       432 q~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  432 QPNAFEPM-ELKELVM  446 (873)
T ss_pred             cccccccc-hhhhhhh
Confidence            55555555 5555544

>KOG4194|consensus

Probab=100.00  E-value=9.3e-38  Score=297.69  Aligned_cols=401  Identities=25%  Similarity=0.330  Sum_probs=326.8

Q ss_pred             ccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEc
Q psy11648        140 NLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSL  219 (584)
Q Consensus       140 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  219 (584)
                      +-+.|+.+++.+..+..+.+.++.                       .+.-+.|++++|.+..+....|.++++|+++++
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~l-----------------------p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l  109 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFL-----------------------PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNL  109 (873)
T ss_pred             CceeeecCccccccccccccCCcC-----------------------ccceeeeeccccccccCcHHHHhcCCcceeeee
Confidence            356778888877776544333221                       245677999999998888888899999999999


Q ss_pred             CCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccC
Q psy11648        220 SFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN  299 (584)
Q Consensus       220 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  299 (584)
                      ..|.++.+   |.......+|++|++.+|.+.  ++...-+ +.++.|+.||++.|.++.++...+..-.++++|++++|
T Consensus       110 ~~N~Lt~I---P~f~~~sghl~~L~L~~N~I~--sv~se~L-~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N  183 (873)
T KOG4194|consen  110 NKNELTRI---PRFGHESGHLEKLDLRHNLIS--SVTSEEL-SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN  183 (873)
T ss_pred             ccchhhhc---ccccccccceeEEeeeccccc--cccHHHH-HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc
Confidence            99888764   655555667999999999886  5554444 78889999999999999888878877788999999999


Q ss_pred             CCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccC
Q psy11648        300 KISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIY  379 (584)
Q Consensus       300 ~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  379 (584)
                      +|+.+....|..  +.+|.+|.++.|+++..+...|.++++|+.|++..|.|.-+....|.++++|+.+.+..|.+...-
T Consensus       184 ~It~l~~~~F~~--lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~  261 (873)
T KOG4194|consen  184 RITTLETGHFDS--LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD  261 (873)
T ss_pred             cccccccccccc--cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence            999888888876  789999999999999988888888999999999999887665567888899999999999988887


Q ss_pred             CccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhH
Q psy11648        380 PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFL  459 (584)
Q Consensus       380 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  459 (584)
                      ..+|..+.++++|++..|.+..+..+++.++   ..|+.|+++.|.|..+....+.. +++|++|+++.|+++.+++..|
T Consensus       262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL---t~L~~L~lS~NaI~rih~d~Wsf-tqkL~~LdLs~N~i~~l~~~sf  337 (873)
T KOG4194|consen  262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGL---TSLEQLDLSYNAIQRIHIDSWSF-TQKLKELDLSSNRITRLDEGSF  337 (873)
T ss_pred             Ccceeeecccceeecccchhhhhhccccccc---chhhhhccchhhhheeecchhhh-cccceeEeccccccccCChhHH
Confidence            7888899999999999999888777766554   57888899999888877665543 7899999999999999999999


Q ss_pred             HHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccc---ccccCCCCCccEEECCCCCCCCcCcccccCCC
Q psy11648        460 QTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV---KRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF  536 (584)
Q Consensus       460 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~  536 (584)
                      ..+ .+|++|.|+.|.+..+...+|.++++|++||+++|.+...+   ...|.++++|+.|++-+|++..++..+|.+++
T Consensus       338 ~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~  416 (873)
T KOG4194|consen  338 RVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLE  416 (873)
T ss_pred             HHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCc
Confidence            988 99999999999998888888999999999999999876643   34588899999999999999999999999999


Q ss_pred             CccEEEcCCCcCCccCccccCCCCcceEECC------CCCCCCCCC
Q psy11648        537 KLRILNISHNRLRSLPRDVFSNTIIEKLDIS------YNQDKIRPG  576 (584)
Q Consensus       537 ~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~------~n~l~~~p~  576 (584)
                      .|++|+|.+|.|.+|-...|.-..|++|.+.      +|++..+++
T Consensus       417 ~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~q  462 (873)
T KOG4194|consen  417 ALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQ  462 (873)
T ss_pred             ccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHH
Confidence            9999999999888776655555588877653      455554443

>KOG0472|consensus

Probab=100.00  E-value=1e-39  Score=297.76  Aligned_cols=494  Identities=24%  Similarity=0.284  Sum_probs=364.2

Q ss_pred             cccccccccccccc------------------ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccc
Q psy11648         30 TTILKGDQLQGIFN------------------SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFD   91 (584)
Q Consensus        30 ~L~l~~~~l~~l~~------------------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~   91 (584)
                      .+++|++.+.++|.                  ..+..++++.|.+..... .+.++ ..+. ++++++|++..+|.++..
T Consensus        13 ~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~-dl~nL-~~l~-vl~~~~n~l~~lp~aig~   89 (565)
T KOG0472|consen   13 SLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLRE-DLKNL-ACLT-VLNVHDNKLSQLPAAIGE   89 (565)
T ss_pred             ccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccH-hhhcc-ccee-EEEeccchhhhCCHHHHH
Confidence            44777777776664                  567777788777666433 34555 5677 888888888888888877


Q ss_pred             cccccceeeeecCCCceeeechhhhccchhccc----ccCceeccchhhcCCccceeeccccccccccccccchhhHHHH
Q psy11648         92 KIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ----HLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIV  167 (584)
Q Consensus        92 ~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~  167 (584)
                      ... ++  .++.++|++.....+ ++....+..    .|.+..+|+.++.+..+..++..+|+++..             
T Consensus        90 l~~-l~--~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~sl-------------  152 (565)
T KOG0472|consen   90 LEA-LK--SLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSL-------------  152 (565)
T ss_pred             HHH-HH--HhhcccchHhhccHH-HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccC-------------
Confidence            777 77  788888877654332 333322221    455555555555555666666666655555             


Q ss_pred             HhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecc
Q psy11648        168 KAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF  247 (584)
Q Consensus       168 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~  247 (584)
                                  |.++. ++.++..+++.++.+...++..+. |+.|+++|...|-+..   .|..++.+.+|+.|++..
T Consensus       153 ------------p~~~~-~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~t---lP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  153 ------------PEDMV-NLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLET---LPPELGGLESLELLYLRR  215 (565)
T ss_pred             ------------chHHH-HHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhc---CChhhcchhhhHHHHhhh
Confidence                        44444 678888889999998888887666 8899999998887765   488889999999999999


Q ss_pred             cccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcc
Q psy11648        248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL  327 (584)
Q Consensus       248 ~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~  327 (584)
                      |.+.  .+|+.   .+|..|.++.++.|.+..++.+...+++++.+||+++|+++++|..+..   +.+|+.|++++|.+
T Consensus       216 Nki~--~lPef---~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl---LrsL~rLDlSNN~i  287 (565)
T KOG0472|consen  216 NKIR--FLPEF---PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL---LRSLERLDLSNNDI  287 (565)
T ss_pred             cccc--cCCCC---CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH---hhhhhhhcccCCcc
Confidence            9885  77733   7899999999999999888887777999999999999999999988776   78899999999999


Q ss_pred             cccccccccCCCCCcEEEccCCcCCCcChhhhcc-----CcCCCE----EeccCC---C-CCcc-CC---ccCCCCCCCc
Q psy11648        328 ELIESDTFYNLKELNTITLSYNLLKSIKTTSFKN-----LNNMLN----IVLSFN---Q-IKYI-YP---NAFVNLPNLV  390 (584)
Q Consensus       328 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~----L~l~~~---~-~~~~-~~---~~~~~~~~L~  390 (584)
                      +.. +..++++ .|+.|.+.||++..+....+..     ++.|+.    =.++..   . -+.. .+   .......+.+
T Consensus       288 s~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tk  365 (565)
T KOG0472|consen  288 SSL-PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTK  365 (565)
T ss_pred             ccC-Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhh
Confidence            987 4568888 8999999999875432111110     001111    011111   0 0000 11   1223456788


Q ss_pred             EEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEE
Q psy11648        391 KLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLY  470 (584)
Q Consensus       391 ~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~  470 (584)
                      .|++++-+++.++.++|... ...-+...++++|++..+|...... -.-++.+.++.|.+..+| ..++.+ ++|..|+
T Consensus       366 iL~~s~~qlt~VPdEVfea~-~~~~Vt~VnfskNqL~elPk~L~~l-kelvT~l~lsnn~isfv~-~~l~~l-~kLt~L~  441 (565)
T KOG0472|consen  366 ILDVSDKQLTLVPDEVFEAA-KSEIVTSVNFSKNQLCELPKRLVEL-KELVTDLVLSNNKISFVP-LELSQL-QKLTFLD  441 (565)
T ss_pred             hhcccccccccCCHHHHHHh-hhcceEEEecccchHhhhhhhhHHH-HHHHHHHHhhcCccccch-HHHHhh-hcceeee
Confidence            99999999999998888765 3344678899999998887654321 112334566777666555 667777 9999999


Q ss_pred             ccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648        471 LDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       471 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      +++|.+.+++. .++.+..|+.+++++|.|. .+|.+......++.+-.++|++..++++.+.++..|..|++.+|.+++
T Consensus       442 L~NN~Ln~LP~-e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~  519 (565)
T KOG0472|consen  442 LSNNLLNDLPE-EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ  519 (565)
T ss_pred             cccchhhhcch-hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh
Confidence            99998887765 4567888999999999886 567777888888888889999999999989999999999999999999


Q ss_pred             cCccccCCCCcceEECCCCCCCCCCC
Q psy11648        551 LPRDVFSNTIIEKLDISYNQDKIRPG  576 (584)
Q Consensus       551 lp~~l~~~~~L~~l~l~~n~l~~~p~  576 (584)
                      +|..++.|++|++|++.||++...++
T Consensus       520 IPp~LgnmtnL~hLeL~gNpfr~Pr~  545 (565)
T KOG0472|consen  520 IPPILGNMTNLRHLELDGNPFRQPRH  545 (565)
T ss_pred             CChhhccccceeEEEecCCccCCCHH
Confidence            99999999999999999999995444

>KOG0472|consensus

Probab=100.00  E-value=1.6e-37  Score=283.33  Aligned_cols=482  Identities=24%  Similarity=0.270  Sum_probs=303.0

Q ss_pred             cccccccccccccc-----ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecC
Q psy11648         30 TTILKGDQLQGIFN-----SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLS  104 (584)
Q Consensus        30 ~L~l~~~~l~~l~~-----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls  104 (584)
                      .+++++|.++.+..     .-+.+++++.|++...++ ++..+ ..++ .++.++|++..+|+.+..... +.  +++.+
T Consensus        49 ~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~-aig~l-~~l~-~l~vs~n~ls~lp~~i~s~~~-l~--~l~~s  122 (565)
T KOG0472|consen   49 KLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPA-AIGEL-EALK-SLNVSHNKLSELPEQIGSLIS-LV--KLDCS  122 (565)
T ss_pred             hhhhccCchhhccHhhhcccceeEEEeccchhhhCCH-HHHHH-HHHH-HhhcccchHhhccHHHhhhhh-hh--hhhcc
Confidence            33555555555433     455555666665555332 33333 4455 566666666666666666666 66  66666


Q ss_pred             CCceeeechhhhccchhccc----ccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCccc
Q psy11648        105 HNKLSVLNMATLYSNVTKLQ----HLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV  180 (584)
Q Consensus       105 ~~~l~~~~~~~~~~~~~l~~----~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  180 (584)
                      +|.+....+ .++.+..+..    +|++.++|+++..+.++..+++.+|.+...++...+  .+.|+++|.....-...|
T Consensus       123 ~n~~~el~~-~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~N~L~tlP  199 (565)
T KOG0472|consen  123 SNELKELPD-SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA--MKRLKHLDCNSNLLETLP  199 (565)
T ss_pred             ccceeecCc-hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH--HHHHHhcccchhhhhcCC
Confidence            666554433 2443333322    566667788888888888888888888888776555  566777777744444445


Q ss_pred             chhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHh
Q psy11648        181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYIL  260 (584)
Q Consensus       181 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~  260 (584)
                      ..++ .+..|+.|+++.|.+...+  .|.+|..|+++.++.|.+...  .....++++++..|++.+|++.  ++|..+ 
T Consensus       200 ~~lg-~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~l--pae~~~~L~~l~vLDLRdNklk--e~Pde~-  271 (565)
T KOG0472|consen  200 PELG-GLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEML--PAEHLKHLNSLLVLDLRDNKLK--EVPDEI-  271 (565)
T ss_pred             hhhc-chhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhh--HHHHhcccccceeeeccccccc--cCchHH-
Confidence            5665 6788888888888887665  488888888888888887665  3345557888888888888884  788877 


Q ss_pred             hhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCC
Q psy11648        261 NKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKE  340 (584)
Q Consensus       261 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  340 (584)
                       ..+.+|++||+++|.+++.+. .++++ .|+.|.+.||.+..+-..+...+.-.-|++|.=   .++   .+.++.-..
T Consensus       272 -clLrsL~rLDlSNN~is~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~---~dglS~se~  342 (565)
T KOG0472|consen  272 -CLLRSLERLDLSNNDISSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIK---DDGLSQSEG  342 (565)
T ss_pred             -HHhhhhhhhcccCCccccCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhc---cCCCCCCcc
Confidence             477888888998888888876 78888 888888888887765554443221112222210   000   000000000


Q ss_pred             CcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCC--CCCcEEecCCCCCCCCChhhhcccccCCCC-c
Q psy11648        341 LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNL--PNLVKLDLQDNKLKDFNLNVFSNITSKQTP-M  417 (584)
Q Consensus       341 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l-~  417 (584)
                      =+.-.  .....+..+. .......+.|++++-.++.++.+.|..-  .-...+++++|++...+.+...    ...+ .
T Consensus       343 ~~e~~--~t~~~~~~~~-~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~----lkelvT  415 (565)
T KOG0472|consen  343 GTETA--MTLPSESFPD-IYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE----LKELVT  415 (565)
T ss_pred             ccccc--CCCCCCcccc-hhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH----HHHHHH
Confidence            00000  0000111111 1223456667777767776644444322  2356777777777665543211    1111 2


Q ss_pred             eEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccC
Q psy11648        418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH  497 (584)
Q Consensus       418 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  497 (584)
                      .+.++.|.+...+...  +.++++..|++++|-+.++|.+.+.-  ..|+.|++++|.+...+ ..+.....++.+-.++
T Consensus       416 ~l~lsnn~isfv~~~l--~~l~kLt~L~L~NN~Ln~LP~e~~~l--v~Lq~LnlS~NrFr~lP-~~~y~lq~lEtllas~  490 (565)
T KOG0472|consen  416 DLVLSNNKISFVPLEL--SQLQKLTFLDLSNNLLNDLPEEMGSL--VRLQTLNLSFNRFRMLP-ECLYELQTLETLLASN  490 (565)
T ss_pred             HHHhhcCccccchHHH--Hhhhcceeeecccchhhhcchhhhhh--hhhheecccccccccch-HHHhhHHHHHHHHhcc
Confidence            3444555554443322  23678888888888888888665543  56889999988776553 3334455566677777


Q ss_pred             cccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648        498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       498 n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      |++....+..+.++.+|..||+.+|.+..++|. +++|++|++|.++||.++.
T Consensus       491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             ccccccChHHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccCC
Confidence            888777776788889999999999988888765 7889999999999998883

>KOG0618|consensus

Probab=99.97  E-value=2.5e-33  Score=281.56  Aligned_cols=487  Identities=21%  Similarity=0.290  Sum_probs=303.6

Q ss_pred             ccccCCCccceeccccccccchhhhccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeEE
Q psy11648          2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLTL   75 (584)
Q Consensus         2 ~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L   75 (584)
                      .+|+|..++.-++..-+     .-..+.+|+++.|-+-+.|-      .+|+.||++.|.+.. ++..+..+ ++|+ .+
T Consensus         2 ~vd~s~~~l~~ip~~i~-----~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~-fp~~it~l-~~L~-~l   73 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQIL-----NNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS-FPIQITLL-SHLR-QL   73 (1081)
T ss_pred             CcccccccCcccchhhc-----cHHHHHhhhccccccccCchHHhhheeeeEEeecccccccc-CCchhhhH-HHHh-hc
Confidence            46777777777777632     22226666888776666433      457777888777766 45556666 6777 78


Q ss_pred             EecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecccccccccc
Q psy11648         76 KITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLN  155 (584)
Q Consensus        76 ~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~  155 (584)
                      .++.|.|..+|.++..... |+  +++|.+|.+.                    .+|..+..+++|++|++++|.+...+
T Consensus        74 n~s~n~i~~vp~s~~~~~~-l~--~lnL~~n~l~--------------------~lP~~~~~lknl~~LdlS~N~f~~~P  130 (1081)
T KOG0618|consen   74 NLSRNYIRSVPSSCSNMRN-LQ--YLNLKNNRLQ--------------------SLPASISELKNLQYLDLSFNHFGPIP  130 (1081)
T ss_pred             ccchhhHhhCchhhhhhhc-ch--hheeccchhh--------------------cCchhHHhhhcccccccchhccCCCc
Confidence            8888877777765555555 77  7777777553                    55677888899999999999877764


Q ss_pred             ccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCcccc
Q psy11648        156 GNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD  235 (584)
Q Consensus       156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  235 (584)
                      .                         .+. .+..++.+..++|.....    ++... ++.+++..+.+.+.  +.....
T Consensus       131 l-------------------------~i~-~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~--~~~~i~  177 (1081)
T KOG0618|consen  131 L-------------------------VIE-VLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGS--FLIDIY  177 (1081)
T ss_pred             h-------------------------hHH-hhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccc--hhcchh
Confidence            3                         222 344555555555511111    11111 55555555544332  222333


Q ss_pred             ccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccC
Q psy11648        236 VFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK  315 (584)
Q Consensus       236 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~  315 (584)
                      .+.+  .|++.+|.+.  .+   .. ..+.+|+.+....|.+..+..    .-++++.|+.+.|.+.......    ...
T Consensus       178 ~l~~--~ldLr~N~~~--~~---dl-s~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~p----~p~  241 (1081)
T KOG0618|consen  178 NLTH--QLDLRYNEME--VL---DL-SNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVHP----VPL  241 (1081)
T ss_pred             hhhe--eeecccchhh--hh---hh-hhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecccc----ccc
Confidence            3322  3666665442  11   11 355566666666665554321    1345666666666665332221    145


Q ss_pred             CccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecC
Q psy11648        316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ  395 (584)
Q Consensus       316 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  395 (584)
                      +|+.++++.+.++..+ .++..|.+|+.+....|.++.. +..+...++|+.+....|.+..+ |......++|++|++.
T Consensus       242 nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhcch-HHHHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeeh
Confidence            6667777777766664 6666777777777777776443 44445566777777777777666 4455567777777777


Q ss_pred             CCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCc
Q psy11648        396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNE  475 (584)
Q Consensus       396 ~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~  475 (584)
                      .|.+...+...+...  ...++.+..+.+++...+... ....+.|+.|++.+|.+++-....+.++ .+|+.|+|++|+
T Consensus       319 ~N~L~~lp~~~l~v~--~~~l~~ln~s~n~l~~lp~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVL--NASLNTLNVSSNKLSTLPSYE-ENNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSYNR  394 (1081)
T ss_pred             hccccccchHHHhhh--hHHHHHHhhhhcccccccccc-chhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecccc
Confidence            777776665444332  223455666666665554222 2235677778888887775444456666 778888888888


Q ss_pred             ccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC--ccCc
Q psy11648        476 IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR--SLPR  553 (584)
Q Consensus       476 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~--~lp~  553 (584)
                      +...+...+.++..|++|++++|.++.+ |+....++.|++|...+|++...|  .+..++.|+.+|++.|.|+  .+|+
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~  471 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPE  471 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhh
Confidence            8777777777888888888888887744 467777888888888888877765  3667788888888888777  3443


Q ss_pred             cccCCCCcceEECCCCCCCCCCCCCC
Q psy11648        554 DVFSNTIIEKLDISYNQDKIRPGRES  579 (584)
Q Consensus       554 ~l~~~~~L~~l~l~~n~l~~~p~~~~  579 (584)
                      ..-+ +.|+.||++||.-..+.++.|
T Consensus       472 ~~p~-p~LkyLdlSGN~~l~~d~~~l  496 (1081)
T KOG0618|consen  472 ALPS-PNLKYLDLSGNTRLVFDHKTL  496 (1081)
T ss_pred             hCCC-cccceeeccCCcccccchhhh
Confidence            3332 788888888887555544444

>KOG0618|consensus

Probab=99.96  E-value=1e-32  Score=277.15  Aligned_cols=459  Identities=21%  Similarity=0.251  Sum_probs=366.9

Q ss_pred             cccccccccccccc-----ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecC
Q psy11648         30 TTILKGDQLQGIFN-----SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLS  104 (584)
Q Consensus        30 ~L~l~~~~l~~l~~-----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls  104 (584)
                      ++|.+..+++-||.     ..+..|+++.|-+-.-+-+.+.+. -+|+ .||+++|.+...|..+....+ |+  .|+++
T Consensus         2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~-v~L~-~l~lsnn~~~~fp~~it~l~~-L~--~ln~s   76 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKR-VKLK-SLDLSNNQISSFPIQITLLSH-LR--QLNLS   76 (1081)
T ss_pred             CcccccccCcccchhhccHHHHHhhhccccccccCchHHhhhe-eeeE-EeeccccccccCCchhhhHHH-Hh--hcccc
Confidence            35888888998887     558888999887665444444444 5699 999999999999999999888 99  99999


Q ss_pred             CCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhH
Q psy11648        105 HNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDRE  184 (584)
Q Consensus       105 ~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  184 (584)
                      .|.|..+                    |....++++|+++.+.+|.++..                         |..+.
T Consensus        77 ~n~i~~v--------------------p~s~~~~~~l~~lnL~~n~l~~l-------------------------P~~~~  111 (1081)
T KOG0618|consen   77 RNYIRSV--------------------PSSCSNMRNLQYLNLKNNRLQSL-------------------------PASIS  111 (1081)
T ss_pred             hhhHhhC--------------------chhhhhhhcchhheeccchhhcC-------------------------chhHH
Confidence            9987643                    44466778999999999987776                         44555


Q ss_pred             hhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCc-cceeecCCccccccccceEEeecccccCCCCchhhHhhhc
Q psy11648        185 KLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK-LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKN  263 (584)
Q Consensus       185 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~  263 (584)
                       .+.+|+.|+++.|.+...+. .+..+..+..+..++|. +..       ++.. ..+.+++..+.+. +.++..+  ..
T Consensus       112 -~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~~~~~-------lg~~-~ik~~~l~~n~l~-~~~~~~i--~~  178 (1081)
T KOG0618|consen  112 -ELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAASNNEKIQR-------LGQT-SIKKLDLRLNVLG-GSFLIDI--YN  178 (1081)
T ss_pred             -hhhcccccccchhccCCCch-hHHhhhHHHHHhhhcchhhhh-------hccc-cchhhhhhhhhcc-cchhcch--hh
Confidence             78999999999999987755 67888899999999982 222       2222 2777788877776 6666554  34


Q ss_pred             CCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcE
Q psy11648        264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT  343 (584)
Q Consensus       264 ~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  343 (584)
                      ++.  .+++.+|.++..   .+..+++|+++....|++..+...      -++++.|+.+.|.++.....  ....++++
T Consensus       179 l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~------g~~l~~L~a~~n~l~~~~~~--p~p~nl~~  245 (1081)
T KOG0618|consen  179 LTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEIS------GPSLTALYADHNPLTTLDVH--PVPLNLQY  245 (1081)
T ss_pred             hhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEec------CcchheeeeccCcceeeccc--ccccccee
Confidence            443  599999998822   577889999999999988766543      68899999999999854332  23468999


Q ss_pred             EEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC
Q psy11648        344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN  423 (584)
Q Consensus       344 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~  423 (584)
                      ++++.+.+.+.. .+...+.+|+.+....|.++.. |..+....+|+.+....|.+.++++..    .+...+++|++..
T Consensus       246 ~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yip~~l----e~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  246 LDISHNNLSNLP-EWIGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEYIPPFL----EGLKSLRTLDLQS  319 (1081)
T ss_pred             eecchhhhhcch-HHHHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhhCCCcc----cccceeeeeeehh
Confidence            999999999885 8999999999999999999766 666777899999999999988876532    2356789999999


Q ss_pred             CccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccc
Q psy11648        424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV  503 (584)
Q Consensus       424 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  503 (584)
                      |++...++.+...-..+++.+..+.+.+...|.-.-..+ +.|+.|++.+|.+++.....+.+++.|+.|+|++|.+...
T Consensus       320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~-~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH-AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             ccccccchHHHhhhhHHHHHHhhhhccccccccccchhh-HHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            999998885554434457788888888776663222333 7789999999999987777888999999999999999877


Q ss_pred             cccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCC
Q psy11648        504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKI  573 (584)
Q Consensus       504 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~  573 (584)
                      ....+.++..|++|++|+|+++.++ .....+..|+.|...+|++..+| ++..+++|+.+|++.|+++.
T Consensus       399 pas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             CHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhh
Confidence            7777889999999999999999886 66788999999999999999999 88889999999999999983

>KOG0444|consensus

Probab=99.96  E-value=6.1e-31  Score=253.28  Aligned_cols=373  Identities=24%  Similarity=0.316  Sum_probs=268.7

Q ss_pred             CCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEE
Q psy11648        138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQEL  217 (584)
Q Consensus       138 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  217 (584)
                      ++-.+-.|+++|.+++.-                       .|..+. .++.++.|.+....+...+ +.++.+.+|++|
T Consensus         6 LpFVrGvDfsgNDFsg~~-----------------------FP~~v~-qMt~~~WLkLnrt~L~~vP-eEL~~lqkLEHL   60 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDR-----------------------FPHDVE-QMTQMTWLKLNRTKLEQVP-EELSRLQKLEHL   60 (1255)
T ss_pred             cceeecccccCCcCCCCc-----------------------CchhHH-HhhheeEEEechhhhhhCh-HHHHHHhhhhhh
Confidence            455777888888777541                       355665 7899999999999887764 578899999999


Q ss_pred             EcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcc
Q psy11648        218 SLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE  297 (584)
Q Consensus       218 ~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  297 (584)
                      .+++|++..+   -..+..++.|+.+.+.+|.+....+|..+|  .+..|+.||+++|++...|. .+..-.++-+|+++
T Consensus        61 s~~HN~L~~v---hGELs~Lp~LRsv~~R~N~LKnsGiP~diF--~l~dLt~lDLShNqL~EvP~-~LE~AKn~iVLNLS  134 (1255)
T KOG0444|consen   61 SMAHNQLISV---HGELSDLPRLRSVIVRDNNLKNSGIPTDIF--RLKDLTILDLSHNQLREVPT-NLEYAKNSIVLNLS  134 (1255)
T ss_pred             hhhhhhhHhh---hhhhccchhhHHHhhhccccccCCCCchhc--ccccceeeecchhhhhhcch-hhhhhcCcEEEEcc
Confidence            9999998765   467888999999999999887678999997  99999999999999998876 68888899999999


Q ss_pred             cCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCC-
Q psy11648        298 YNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK-  376 (584)
Q Consensus       298 ~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-  376 (584)
                      +|.|..||...|..  +.-|-.|++++|.+...+| .+..+..|+.|.+++|++.......+..+++|+.|.+++..-+ 
T Consensus       135 ~N~IetIPn~lfin--LtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  135 YNNIETIPNSLFIN--LTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             cCccccCCchHHHh--hHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence            99999999998877  8889999999999988755 4788899999999999988776666777888888888876532 


Q ss_pred             ccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCCh
Q psy11648        377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV  456 (584)
Q Consensus       377 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  456 (584)
                      .-+|..+..+.+|..+|++.|.+...+.- +..   ..+|+.|++++|.++.+......  ..++++|+++.|+++.+| 
T Consensus       212 ~N~Ptsld~l~NL~dvDlS~N~Lp~vPec-ly~---l~~LrrLNLS~N~iteL~~~~~~--W~~lEtLNlSrNQLt~LP-  284 (1255)
T KOG0444|consen  212 DNIPTSLDDLHNLRDVDLSENNLPIVPEC-LYK---LRNLRRLNLSGNKITELNMTEGE--WENLETLNLSRNQLTVLP-  284 (1255)
T ss_pred             hcCCCchhhhhhhhhccccccCCCcchHH-Hhh---hhhhheeccCcCceeeeeccHHH--Hhhhhhhccccchhccch-
Confidence            34577888889999999999987765432 222   23445555555555443332222  234445555555554444 


Q ss_pred             hhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccc-ccccccCCCCCccEEECCCCCCCCcCcccccCC
Q psy11648        457 NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS  535 (584)
Q Consensus       457 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~  535 (584)
                      +                         ++..++.|+.|.+.+|+++- -+|..++.+.+|+.+..++|.+. ..|+.++.|
T Consensus       285 ~-------------------------avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC  338 (1255)
T KOG0444|consen  285 D-------------------------AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC  338 (1255)
T ss_pred             H-------------------------HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh
Confidence            2                         33444445555444444332 13445555666666666655543 334566667


Q ss_pred             CCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCC
Q psy11648        536 FKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGR  577 (584)
Q Consensus       536 ~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~  577 (584)
                      ++|+.|.|+.|++..+|+.+.-++.|+.||++.|+--.+|+.
T Consensus       339 ~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  339 VKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             HHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence            777777777777777777777777777777777765555543

>KOG0444|consensus

Probab=99.94  E-value=1.1e-28  Score=237.84  Aligned_cols=356  Identities=21%  Similarity=0.285  Sum_probs=263.0

Q ss_pred             CccccCCCccceeccccccccchhhhccccccccccccccccc-----ccceeeeecCCceeecCCccccccccceeeEE
Q psy11648          1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN-----SKLRELEITGKDLKFIDPSAFDNIDACYDLTL   75 (584)
Q Consensus         1 ~~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~-----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L   75 (584)
                      +-.|+|+|.+.|...+   ..+..+++++-|.+...++..+|.     .+|++|.++.|++..+. ..+..+ +.|+ .+
T Consensus        10 rGvDfsgNDFsg~~FP---~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~L-p~LR-sv   83 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFP---HDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH-GELSDL-PRLR-SV   83 (1255)
T ss_pred             ecccccCCcCCCCcCc---hhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh-hhhccc-hhhH-HH
Confidence            3579999999986655   457888888888999999999998     89999999999988753 456666 8899 99


Q ss_pred             EecCcccc--cccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecccccccc
Q psy11648         76 KITNTQIE--ELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITD  153 (584)
Q Consensus        76 ~ls~n~i~--~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~  153 (584)
                      ++.+|++.  .||..+|+.-. |+  .||||+|++++                    +|..+...+++-.|++|+|.|..
T Consensus        84 ~~R~N~LKnsGiP~diF~l~d-Lt--~lDLShNqL~E--------------------vP~~LE~AKn~iVLNLS~N~Iet  140 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKD-LT--ILDLSHNQLRE--------------------VPTNLEYAKNSIVLNLSYNNIET  140 (1255)
T ss_pred             hhhccccccCCCCchhccccc-ce--eeecchhhhhh--------------------cchhhhhhcCcEEEEcccCcccc
Confidence            99999987  89999999988 99  99999998874                    45556666778888888888887


Q ss_pred             ccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCcc
Q psy11648        154 LNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV  233 (584)
Q Consensus       154 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  233 (584)
                      ++...|.++ +-|-.||||+......|..+. .+.+|++|++++|.+.......+..++.|+.|.+++.+-+- ..+|..
T Consensus       141 IPn~lfinL-tDLLfLDLS~NrLe~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl-~N~Pts  217 (1255)
T KOG0444|consen  141 IPNSLFINL-TDLLFLDLSNNRLEMLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL-DNIPTS  217 (1255)
T ss_pred             CCchHHHhh-HhHhhhccccchhhhcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-hcCCCc
Confidence            776666544 346677777444444444454 67788888888887766555556667777777777764321 125667


Q ss_pred             ccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccc
Q psy11648        234 FDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI  313 (584)
Q Consensus       234 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~  313 (584)
                      +..+.+|..++++.|.+.  .+|+..  ..+++|+.|++++|.++.+.. ......+|++|+++.|+++.+|..+.+   
T Consensus       218 ld~l~NL~dvDlS~N~Lp--~vPecl--y~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP~avcK---  289 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLSENNLP--IVPECL--YKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLPDAVCK---  289 (1255)
T ss_pred             hhhhhhhhhccccccCCC--cchHHH--hhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccchHHHhh---
Confidence            777777888888877773  677776  477788888888887776543 445566777888888887777776665   


Q ss_pred             cCCccEEEcCCCcccc-cccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEE
Q psy11648        314 HKRLKEIRLSNNYLEL-IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL  392 (584)
Q Consensus       314 ~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  392 (584)
                      +++|+.|++.+|.++. -.|..++.+..|+.+..++|.+.- .|..+..|.+|+.|.++.|.+... |+++.-++.|+.|
T Consensus       290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vL  367 (1255)
T KOG0444|consen  290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVL  367 (1255)
T ss_pred             hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceeec-hhhhhhcCCccee
Confidence            6777777777776653 234556777777777777776643 366677777888888887777666 6777777788888


Q ss_pred             ecCCCC
Q psy11648        393 DLQDNK  398 (584)
Q Consensus       393 ~l~~~~  398 (584)
                      |+..|+
T Consensus       368 DlreNp  373 (1255)
T KOG0444|consen  368 DLRENP  373 (1255)
T ss_pred             eccCCc
Confidence            887776

>KOG4237|consensus

Probab=99.90  E-value=7.9e-25  Score=200.41  Aligned_cols=411  Identities=23%  Similarity=0.271  Sum_probs=214.9

Q ss_pred             eeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccC
Q psy11648         48 ELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG  127 (584)
Q Consensus        48 ~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~  127 (584)
                      ..++++.++++++.+.-    +.-. +++|..|+|+.||++.|+..++|+  .||||+|.|+.+.+++|..+..      
T Consensus        50 ~VdCr~~GL~eVP~~LP----~~tv-eirLdqN~I~~iP~~aF~~l~~LR--rLdLS~N~Is~I~p~AF~GL~~------  116 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLP----PETV-EIRLDQNQISSIPPGAFKTLHRLR--RLDLSKNNISFIAPDAFKGLAS------  116 (498)
T ss_pred             eEEccCCCcccCcccCC----Ccce-EEEeccCCcccCChhhccchhhhc--eecccccchhhcChHhhhhhHh------
Confidence            45677777777765443    3445 788999999999999999999999  9999999999888887776654      


Q ss_pred             ceeccchhhcCCccceeec-cccccccccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccch
Q psy11648        128 TTILKDREKLLSNLETLLL-RCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNG  205 (584)
Q Consensus       128 l~~l~~~l~~~~~L~~L~l-~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  205 (584)
                                   +..|-+ ++|+|+++..++|.++ .+++-|.+. +.+..+..+.|. .++++..|.+.++.+..+..
T Consensus       117 -------------l~~Lvlyg~NkI~~l~k~~F~gL-~slqrLllNan~i~Cir~~al~-dL~~l~lLslyDn~~q~i~~  181 (498)
T KOG4237|consen  117 -------------LLSLVLYGNNKITDLPKGAFGGL-SSLQRLLLNANHINCIRQDALR-DLPSLSLLSLYDNKIQSICK  181 (498)
T ss_pred             -------------hhHHHhhcCCchhhhhhhHhhhH-HHHHHHhcChhhhcchhHHHHH-Hhhhcchhcccchhhhhhcc
Confidence                         333222 2355555555444433 234445554 444444455554 78888888888888887777


Q ss_pred             hhhcCCCCCCEEEcCCCcccee----------ecCCccccccccceEEeecccccC------------------------
Q psy11648        206 NLFRHLYNLQELSLSFNKLQII----------ELNSNVFDVFEKLQLLEISFSLFN------------------------  251 (584)
Q Consensus       206 ~~~~~~~~L~~L~l~~~~l~~~----------~~~~~~~~~l~~L~~L~l~~~~~~------------------------  251 (584)
                      .+|..+..++.+.+..|.+...          .+.+..++++....-..+.+..+.                        
T Consensus       182 ~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~  261 (498)
T KOG4237|consen  182 GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP  261 (498)
T ss_pred             ccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc
Confidence            7888888888888876652110          001222333222222222222111                        


Q ss_pred             CCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccc
Q psy11648        252 SNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIE  331 (584)
Q Consensus       252 ~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~  331 (584)
                      +...|...| +++++|+.|++++|.++.+...+|.....++.|.+.+|++..+....|.+  +..|++|++.+|+++.+.
T Consensus       262 d~~cP~~cf-~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~--ls~L~tL~L~~N~it~~~  338 (498)
T KOG4237|consen  262 DSICPAKCF-KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQG--LSGLKTLSLYDNQITTVA  338 (498)
T ss_pred             CCcChHHHH-hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhc--cccceeeeecCCeeEEEe
Confidence            122333334 55555555555555555555555555555555555555555555544444  555555555555555555


Q ss_pred             cccccCCCCCcEEEccCCcCCCc-ChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhccc
Q psy11648        332 SDTFYNLKELNTITLSYNLLKSI-KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNI  410 (584)
Q Consensus       332 ~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  410 (584)
                      +..|.....|.++.+-.|++.-. .-.|++.  .     +.+....+.  ..-+....++.+.+++..+.+...+.-...
T Consensus       339 ~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~--W-----lr~~~~~~~--~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~  409 (498)
T KOG4237|consen  339 PGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE--W-----LRKKSVVGN--PRCQSPGFVRQIPISDVAFGDFRCGGPEEL  409 (498)
T ss_pred             cccccccceeeeeehccCcccCccchHHHHH--H-----HhhCCCCCC--CCCCCCchhccccchhccccccccCCcccc
Confidence            55555555555555554443311 0001100  0     001111111  011222345556665555443322200000


Q ss_pred             ccCCCCceEECCCCccccccccccccccCcccE-EEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcc
Q psy11648        411 TSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS-LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDV  489 (584)
Q Consensus       411 ~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~-L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  489 (584)
                            -...-+.|          -..++.+.+ ...++..+..+|.    +.|..-.++++.+|.++.++.+   .+++
T Consensus       410 ------~~~~s~~c----------P~~c~c~~tVvRcSnk~lk~lp~----~iP~d~telyl~gn~~~~vp~~---~~~~  466 (498)
T KOG4237|consen  410 ------GCLTSSPC----------PPPCTCLDTVVRCSNKLLKLLPR----GIPVDVTELYLDGNAITSVPDE---LLRS  466 (498)
T ss_pred             ------CCCCCCCC----------CCCcchhhhhHhhcccchhhcCC----CCCchhHHHhcccchhcccCHH---HHhh
Confidence                  00000000          011222322 2333333333332    2224455666777766666554   3445


Q ss_pred             cCeeeccCcccccccccccCCCCCccEEECCCC
Q psy11648        490 LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN  522 (584)
Q Consensus       490 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n  522 (584)
                      | .+|+++|.+.......|.++++|.+|.+++|
T Consensus       467 l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  467 L-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             h-hcccccCceehhhcccccchhhhheeEEecC
Confidence            5 6677777776666666777777777777764

>PLN03210 Resistant to P

Probab=99.87  E-value=4.1e-20  Score=207.99  Aligned_cols=341  Identities=21%  Similarity=0.228  Sum_probs=252.7

Q ss_pred             cchhhhcCCCCCCEEEcCCCccce---e-ecCCcccccc-ccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccc
Q psy11648        203 LNGNLFRHLYNLQELSLSFNKLQI---I-ELNSNVFDVF-EKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI  277 (584)
Q Consensus       203 ~~~~~~~~~~~L~~L~l~~~~l~~---~-~~~~~~~~~l-~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l  277 (584)
                      +...+|.+|++|+.|.+..+....   . ...|..+..+ ++|+.|.+.++.+  ..+|..+   ...+|++|++.++.+
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f---~~~~L~~L~L~~s~l  623 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF---RPENLVKLQMQGSKL  623 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC---CccCCcEEECcCccc
Confidence            455678999999999996553211   0 0135556665 4699999999887  4788775   578999999999998


Q ss_pred             cccccccccCCCCCcEEEcccCC-CcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcCh
Q psy11648        278 KNIRNYSLYNLTSLNYINLEYNK-ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT  356 (584)
Q Consensus       278 ~~~~~~~l~~l~~L~~L~l~~~~-l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  356 (584)
                      ..++. .+..+++|+.++++++. +..+|.  +..  +++|+.|++.+|......|..+..+++|+.|++++|......|
T Consensus       624 ~~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~--l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        624 EKLWD-GVHSLTGLRNIDLRGSKNLKEIPD--LSM--ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             ccccc-ccccCCCCCEEECCCCCCcCcCCc--ccc--CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence            87654 67889999999999874 556654  222  7999999999987666667778899999999999985444444


Q ss_pred             hhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccc-----
Q psy11648        357 TSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE-----  431 (584)
Q Consensus       357 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-----  431 (584)
                      ..+ ++++|+.|++++|......|..   ..+|++|++++|.+...+...     ..++|+.|.+.++....+..     
T Consensus       699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-----~l~~L~~L~l~~~~~~~l~~~~~~l  769 (1153)
T PLN03210        699 TGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-----RLENLDELILCEMKSEKLWERVQPL  769 (1153)
T ss_pred             CcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-----cccccccccccccchhhcccccccc
Confidence            433 6889999999998755444432   467899999999877654321     34567777776643222111     


Q ss_pred             -cccccccCcccEEEccCCC-CCCCChhhHHHhhCCCcEEEccCCc-ccccCccccCCCcccCeeeccCccccccccccc
Q psy11648        432 -NDKKQAPIYIKSLDLSNNR-IQEVPVNFLQTFADSLRKLYLDFNE-IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTF  508 (584)
Q Consensus       432 -~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  508 (584)
                       ......+++|+.|++++|. +..+| ..+..+ ++|+.|++++|. +..++. .. .+++|+.|++++|......|.  
T Consensus       770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L-~~L~~L~Ls~C~~L~~LP~-~~-~L~sL~~L~Ls~c~~L~~~p~--  843 (1153)
T PLN03210        770 TPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNL-HKLEHLEIENCINLETLPT-GI-NLESLESLDLSGCSRLRTFPD--  843 (1153)
T ss_pred             chhhhhccccchheeCCCCCCccccC-hhhhCC-CCCCEEECCCCCCcCeeCC-CC-CccccCEEECCCCCccccccc--
Confidence             0112235789999999986 55677 457777 999999999984 555443 33 689999999999875544443  


Q ss_pred             CCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCC-cCCccCccccCCCCcceEECCCCC
Q psy11648        509 IGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN-RLRSLPRDVFSNTIIEKLDISYNQ  570 (584)
Q Consensus       509 ~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n-~l~~lp~~l~~~~~L~~l~l~~n~  570 (584)
                       ..++|+.|++++|.+..++ ..+..+++|+.|++++| +++.+|.....+++|+.+++++|.
T Consensus       844 -~~~nL~~L~Ls~n~i~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        844 -ISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             -cccccCEeECCCCCCccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence             3468999999999998765 56788999999999997 899999988889999999999985

syringae 6; Provisional

>KOG4237|consensus

Probab=99.86  E-value=1.6e-23  Score=191.88  Aligned_cols=297  Identities=24%  Similarity=0.259  Sum_probs=212.1

Q ss_pred             EEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecccccccc
Q psy11648         74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITD  153 (584)
Q Consensus        74 ~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~  153 (584)
                      .+|-++-.++++|..+=....     .|+|..|.|+.+.+.+                   |+.+++|+.|||++|.|+.
T Consensus        50 ~VdCr~~GL~eVP~~LP~~tv-----eirLdqN~I~~iP~~a-------------------F~~l~~LRrLdLS~N~Is~  105 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPPETV-----EIRLDQNQISSIPPGA-------------------FKTLHRLRRLDLSKNNISF  105 (498)
T ss_pred             eEEccCCCcccCcccCCCcce-----EEEeccCCcccCChhh-------------------ccchhhhceecccccchhh
Confidence            477777778888887655544     7889999888766554                   4556899999999999999


Q ss_pred             ccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCc
Q psy11648        154 LNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSN  232 (584)
Q Consensus       154 ~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  232 (584)
                      +.+++|.++..-++.++.+ |.+.++....|. .+..++.|.+.-+.+.-+...+|..+++++.|.+.+|.+..+  -..
T Consensus       106 I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~-gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i--~~~  182 (498)
T KOG4237|consen  106 IAPDAFKGLASLLSLVLYGNNKITDLPKGAFG-GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI--CKG  182 (498)
T ss_pred             cChHhhhhhHhhhHHHhhcCCchhhhhhhHhh-hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhh--ccc
Confidence            9999999998888888888 889999888887 899999999999999988889999999999999999988766  445


Q ss_pred             cccccccceEEeecccccCCCC-ch---hh------HhhhcCCCCCEEEccCccccccccccccCC-CCCc-EEEcccCC
Q psy11648        233 VFDVFEKLQLLEISFSLFNSNE-FP---YY------ILNKNLNTLEWLAMDNNNIKNIRNYSLYNL-TSLN-YINLEYNK  300 (584)
Q Consensus       233 ~~~~l~~L~~L~l~~~~~~~~~-l~---~~------~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l-~~L~-~L~l~~~~  300 (584)
                      .|..+..++++.+..+.+.... +|   ..      .+ ++........+.+..+..+....+... ..+. .+.-.++.
T Consensus       183 tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet-sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~  261 (498)
T KOG4237|consen  183 TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET-SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP  261 (498)
T ss_pred             cccchhccchHhhhcCccccccccchhhhHHhhchhhc-ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc
Confidence            7888888899888887643110 11   00      00 112222222222223332322222211 0111 11111112


Q ss_pred             CcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCC
Q psy11648        301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP  380 (584)
Q Consensus       301 l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  380 (584)
                      ...-|...|..  +++|+.+++++|.++.+...+|.+...+++|.+..|++..+....|.++..|+.|++.+|.++.+.|
T Consensus       262 d~~cP~~cf~~--L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  262 DSICPAKCFKK--LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             CCcChHHHHhh--cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence            22333344544  7888888888888888877888888888888888888877777778888888888888888888888


Q ss_pred             ccCCCCCCCcEEecCCCCCC
Q psy11648        381 NAFVNLPNLVKLDLQDNKLK  400 (584)
Q Consensus       381 ~~~~~~~~L~~L~l~~~~l~  400 (584)
                      .+|....+|.+|.+-.|++.
T Consensus       340 ~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  340 GAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             ccccccceeeeeehccCccc
Confidence            88888888888888877753

>PLN03210 Resistant to P

Probab=99.85  E-value=1.6e-19  Score=203.26  Aligned_cols=326  Identities=17%  Similarity=0.129  Sum_probs=245.2

Q ss_pred             CCccccccccceEEeecccccCC-----CCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCccc
Q psy11648        230 NSNVFDVFEKLQLLEISFSLFNS-----NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKI  304 (584)
Q Consensus       230 ~~~~~~~l~~L~~L~l~~~~~~~-----~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i  304 (584)
                      ...+|.++++|+.|.+..+....     ..+|..+. .-..+|+.|.+.++.+..++. .+ ...+|+.|++.++.+..+
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~-~lp~~Lr~L~~~~~~l~~lP~-~f-~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFD-YLPPKLRLLRWDKYPLRCMPS-NF-RPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchh-hcCcccEEEEecCCCCCCCCC-cC-CccCCcEEECcCcccccc
Confidence            45678999999999997653210     24555553 234579999999999888875 34 568999999999999888


Q ss_pred             ccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCC
Q psy11648        305 HNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFV  384 (584)
Q Consensus       305 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  384 (584)
                      +.....   +++|+.++++++......+ .+..+++|+.|++++|......+..+..+++|+.|++++|......|..+ 
T Consensus       627 ~~~~~~---l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        627 WDGVHS---LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             cccccc---CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence            766543   8999999999876444334 37788999999999987666667788899999999999986444445444 


Q ss_pred             CCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCC-------CCChh
Q psy11648        385 NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ-------EVPVN  457 (584)
Q Consensus       385 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-------~~~~~  457 (584)
                      .+++|+.|++++|......+    .  ...+++.|+++++.+..++...   .+++|+.|.+..+...       .++..
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p----~--~~~nL~~L~L~~n~i~~lP~~~---~l~~L~~L~l~~~~~~~l~~~~~~l~~~  772 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFP----D--ISTNISWLDLDETAIEEFPSNL---RLENLDELILCEMKSEKLWERVQPLTPL  772 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccc----c--ccCCcCeeecCCCccccccccc---cccccccccccccchhhccccccccchh
Confidence            78999999999986433221    1  1347789999999988776544   3578888888764322       22212


Q ss_pred             hHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCC
Q psy11648        458 FLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFK  537 (584)
Q Consensus       458 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~  537 (584)
                      .+. .+++|+.|++++|......|..++++++|+.|++++|.....+|... .+++|+.|++++|......|..   .++
T Consensus       773 ~~~-~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~n  847 (1153)
T PLN03210        773 MTM-LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STN  847 (1153)
T ss_pred             hhh-ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccc
Confidence            222 23899999999997665566778999999999999986555566554 7899999999998654333332   468


Q ss_pred             ccEEEcCCCcCCccCccccCCCCcceEECCC-CCCCCCCCC
Q psy11648        538 LRILNISHNRLRSLPRDVFSNTIIEKLDISY-NQDKIRPGR  577 (584)
Q Consensus       538 L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~-n~l~~~p~~  577 (584)
                      |++|++++|.++.+|..+..+++|+.|++++ +.++.+|..
T Consensus       848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~  888 (1153)
T PLN03210        848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN  888 (1153)
T ss_pred             cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence            9999999999999999999999999999998 456677764

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=5e-20  Score=192.22  Aligned_cols=258  Identities=19%  Similarity=0.227  Sum_probs=185.1

Q ss_pred             CCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEE
Q psy11648        265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTI  344 (584)
Q Consensus       265 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  344 (584)
                      ..-..|+++++.++.+|+ .+.  ++|+.|++.+|+++.+|..      +++|++|++++|.++.++.    ..++|+.|
T Consensus       201 ~~~~~LdLs~~~LtsLP~-~l~--~~L~~L~L~~N~Lt~LP~l------p~~Lk~LdLs~N~LtsLP~----lp~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLPV----LPPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCCcCCc-chh--cCCCEEEccCCcCCCCCCC------CCCCcEEEecCCccCcccC----ccccccee
Confidence            345677777777776654 332  3677788888777777653      5777888888887776532    23577778


Q ss_pred             EccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCC
Q psy11648        345 TLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN  424 (584)
Q Consensus       345 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~  424 (584)
                      ++++|.+..+..    ....|+.|++++|.++.+ |.   ..++|+.|++++|.+++++. .      ...++.|++++|
T Consensus       268 ~Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~-l------p~~L~~L~Ls~N  332 (788)
T PRK15387        268 SIFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA-L------PSELCKLWAYNN  332 (788)
T ss_pred             eccCCchhhhhh----chhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC-C------cccccccccccC
Confidence            888877765421    225677788888877765 32   24678888888888776542 1      124677788888


Q ss_pred             ccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccc
Q psy11648        425 YITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV  504 (584)
Q Consensus       425 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  504 (584)
                      .++.++.     ...+|+.|++++|+++.+|.     .+.+|+.|++++|++..++.    ...+|+.|++++|.++.. 
T Consensus       333 ~L~~LP~-----lp~~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~L-  397 (788)
T PRK15387        333 QLTSLPT-----LPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSL-  397 (788)
T ss_pred             ccccccc-----cccccceEecCCCccCCCCC-----CCcccceehhhccccccCcc----cccccceEEecCCcccCC-
Confidence            8876653     13578899999988888773     13778888898888876543    135788999999988753 


Q ss_pred             ccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        505 KRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       505 ~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                      |.   ..++|+.|++++|+++.++. .   ..+|+.|++++|+|+.+|..+..+++|+.|++++|+++
T Consensus       398 P~---l~s~L~~LdLS~N~LssIP~-l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        398 PV---LPSELKELMVSGNRLTSLPM-L---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             CC---cccCCCEEEccCCcCCCCCc-c---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence            32   23678899999999887653 2   35788899999999999988888899999999999998

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=1.1e-19  Score=189.55  Aligned_cols=141  Identities=21%  Similarity=0.204  Sum_probs=76.8

Q ss_pred             CCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCC
Q psy11648        189 NLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLE  268 (584)
Q Consensus       189 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~  268 (584)
                      .|+.|++++|.++.++.  +  ..+|++|++++|++..+   |..   ..+|+.|++++|.+.  .+|..     ..+|+
T Consensus       323 ~L~~L~Ls~N~L~~LP~--l--p~~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N~L~--~LP~l-----~~~L~  385 (788)
T PRK15387        323 ELCKLWAYNNQLTSLPT--L--PSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLT--SLPAL-----PSGLK  385 (788)
T ss_pred             cccccccccCccccccc--c--ccccceEecCCCccCCC---CCC---Ccccceehhhccccc--cCccc-----ccccc
Confidence            45556666666654332  1  13566666666666543   221   234556666666553  34422     23566


Q ss_pred             EEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccC
Q psy11648        269 WLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY  348 (584)
Q Consensus       269 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  348 (584)
                      .|++++|.++.++. .   .++|+.|++++|.++.+|..      ..+|+.|++++|+++.+ |..+..++.++.+++++
T Consensus       386 ~LdLs~N~Lt~LP~-l---~s~L~~LdLS~N~LssIP~l------~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        386 ELIVSGNRLTSLPV-L---PSELKELMVSGNRLTSLPML------PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEG  454 (788)
T ss_pred             eEEecCCcccCCCC-c---ccCCCEEEccCCcCCCCCcc------hhhhhhhhhccCccccc-ChHHhhccCCCeEECCC
Confidence            66666666665443 1   24566666666666655542      34455666666666644 34455566666666666


Q ss_pred             CcCCCcChh
Q psy11648        349 NLLKSIKTT  357 (584)
Q Consensus       349 ~~~~~~~~~  357 (584)
                      |++++..+.
T Consensus       455 N~Ls~~~~~  463 (788)
T PRK15387        455 NPLSERTLQ  463 (788)
T ss_pred             CCCCchHHH
Confidence            666654433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.9e-17  Score=174.22  Aligned_cols=246  Identities=22%  Similarity=0.330  Sum_probs=127.4

Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648        266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT  345 (584)
Q Consensus       266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  345 (584)
                      +...|+++++.++.++. .+  .+.++.|++++|+++.+|...     ..+|+.|++++|.++.+.. .+  ...|+.|+
T Consensus       179 ~~~~L~L~~~~LtsLP~-~I--p~~L~~L~Ls~N~LtsLP~~l-----~~nL~~L~Ls~N~LtsLP~-~l--~~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLTTIPA-CI--PEQITTLILDNNELKSLPENL-----QGNIKTLYANSNQLTSIPA-TL--PDTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcCcCCc-cc--ccCCcEEEecCCCCCcCChhh-----ccCCCEEECCCCccccCCh-hh--hccccEEE
Confidence            45566666666665543 22  245666666666666665543     3456666666666654422 11  13455666


Q ss_pred             ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648        346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY  425 (584)
Q Consensus       346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~  425 (584)
                      +++|.+..+ |..+.  .+|+.|++++|.+..+ |..+.  ++|+.|++++|.++.                        
T Consensus       248 Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~L-P~~l~--~sL~~L~Ls~N~Lt~------------------------  297 (754)
T PRK15370        248 LSINRITEL-PERLP--SALQSLDLFHNKISCL-PENLP--EELRYLSVYDNSIRT------------------------  297 (754)
T ss_pred             CcCCccCcC-ChhHh--CCCCEEECcCCccCcc-ccccC--CCCcEEECCCCcccc------------------------
Confidence            666655533 22221  3455555555555543 22221  345555555555443                        


Q ss_pred             cccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc
Q psy11648        426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK  505 (584)
Q Consensus       426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  505 (584)
                         ++...    .++|+.|++++|.++.+|...    +++|+.|++++|.++.++.. +  .++|+.|++++|.+.. +|
T Consensus       298 ---LP~~l----p~sL~~L~Ls~N~Lt~LP~~l----~~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~L~~-LP  362 (754)
T PRK15370        298 ---LPAHL----PSGITHLNVQSNSLTALPETL----PPGLKTLEAGENALTSLPAS-L--PPELQVLDVSKNQITV-LP  362 (754)
T ss_pred             ---Ccccc----hhhHHHHHhcCCccccCCccc----cccceeccccCCccccCChh-h--cCcccEEECCCCCCCc-CC
Confidence               32211    134555566665555554221    14566666666665554322 2  1456666666666553 23


Q ss_pred             cccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccC----CCCcceEECCCCCCC
Q psy11648        506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS----NTIIEKLDISYNQDK  572 (584)
Q Consensus       506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~----~~~L~~l~l~~n~l~  572 (584)
                      ..+  .++|+.|++++|++..+++...   ..|+.|++++|+++.+|..+..    ++.+..+++.+|+++
T Consensus       363 ~~l--p~~L~~LdLs~N~Lt~LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        363 ETL--PPTITTLDVSRNALTNLPENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhh--cCCcCEEECCCCcCCCCCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            222  2466666666666665544321   3566666666666665543322    256666666666664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.70  E-value=2.4e-17  Score=173.50  Aligned_cols=243  Identities=22%  Similarity=0.264  Sum_probs=132.2

Q ss_pred             cccccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecC
Q psy11648         28 LGTTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLS  104 (584)
Q Consensus        28 Lr~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls  104 (584)
                      ...|+++++.++.+|.   ++++.|++++|+++.++...+    .+|+ +|++++|+++.+|..+..   .|+  .|+++
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~----~nL~-~L~Ls~N~LtsLP~~l~~---~L~--~L~Ls  249 (754)
T PRK15370        180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ----GNIK-TLYANSNQLTSIPATLPD---TIQ--EMELS  249 (754)
T ss_pred             ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc----cCCC-EEECCCCccccCChhhhc---ccc--EEECc
Confidence            3455666666666665   566666666666665443322    3566 666666666666654432   355  66666


Q ss_pred             CCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhH
Q psy11648        105 HNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDRE  184 (584)
Q Consensus       105 ~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  184 (584)
                      +|.+..+                    |..+.  ++|+.|++++|.++.++.                         .+ 
T Consensus       250 ~N~L~~L--------------------P~~l~--s~L~~L~Ls~N~L~~LP~-------------------------~l-  281 (754)
T PRK15370        250 INRITEL--------------------PERLP--SALQSLDLFHNKISCLPE-------------------------NL-  281 (754)
T ss_pred             CCccCcC--------------------ChhHh--CCCCEEECcCCccCcccc-------------------------cc-
Confidence            6655422                    22221  356666666666654421                         11 


Q ss_pred             hhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcC
Q psy11648        185 KLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNL  264 (584)
Q Consensus       185 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~  264 (584)
                        .++|+.|++++|.++.++.. +.  ++|+.|++++|.+..+   |..+  .++|+.|++++|.+.  .+|..+    .
T Consensus       282 --~~sL~~L~Ls~N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~L---P~~l--~~sL~~L~Ls~N~Lt--~LP~~l----~  345 (754)
T PRK15370        282 --PEELRYLSVYDNSIRTLPAH-LP--SGITHLNVQSNSLTAL---PETL--PPGLKTLEAGENALT--SLPASL----P  345 (754)
T ss_pred             --CCCCcEEECCCCccccCccc-ch--hhHHHHHhcCCccccC---Cccc--cccceeccccCCccc--cCChhh----c
Confidence              14566666666666654321 11  3566666666665543   2222  245666666666664  455433    2


Q ss_pred             CCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccc---cccccCCCCC
Q psy11648        265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIE---SDTFYNLKEL  341 (584)
Q Consensus       265 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L  341 (584)
                      ++|+.|++++|.++.++. .+  .+.|++|++++|.++.+|...     ...|+.|++++|++..++   +.....++.+
T Consensus       346 ~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~LP~~l-----~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l  417 (754)
T PRK15370        346 PELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNLPENL-----PAALQIMQASRNNLVRLPESLPHFRGEGPQP  417 (754)
T ss_pred             CcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCCCHhH-----HHHHHHHhhccCCcccCchhHHHHhhcCCCc
Confidence            466677777666665443 22  246666777776666665542     234666666666665432   1122334556


Q ss_pred             cEEEccCCcCC
Q psy11648        342 NTITLSYNLLK  352 (584)
Q Consensus       342 ~~L~l~~~~~~  352 (584)
                      ..+++.+|++.
T Consensus       418 ~~L~L~~Npls  428 (754)
T PRK15370        418 TRIIVEYNPFS  428 (754)
T ss_pred             cEEEeeCCCcc
Confidence            66666666655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.66  E-value=3.2e-17  Score=160.73  Aligned_cols=256  Identities=20%  Similarity=0.196  Sum_probs=148.8

Q ss_pred             ccccCCCccceeccccccccchhhhcccccccccccccc-----ccc-----ccceeeeecCCceee------cCCcccc
Q psy11648          2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQG-----IFN-----SKLRELEITGKDLKF------IDPSAFD   65 (584)
Q Consensus         2 ~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~-----l~~-----~~L~~L~ls~n~~~~------~~~~~~~   65 (584)
                      .|+|.++++++.....+   ++.+..|+.|+++++.+++     ++.     +++++++++++.+..      .....+.
T Consensus         2 ~l~L~~~~l~~~~~~~~---~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~   78 (319)
T cd00116           2 QLSLKGELLKTERATEL---LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT   78 (319)
T ss_pred             ccccccCcccccchHHH---HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence            58899999987666543   6677778888999998854     332     668889988887652      1123344


Q ss_pred             ccccceeeEEEecCcccccccccccccc---cccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcC-Ccc
Q psy11648         66 NIDACYDLTLKITNTQIEELPSGLFDKI---ENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLL-SNL  141 (584)
Q Consensus        66 ~~~~~L~~~L~ls~n~i~~l~~~~~~~~---~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~-~~L  141 (584)
                      .. ++|+ .|++++|.+.......+...   ++|+  +|++++|++.+.....+               ...+..+ ++|
T Consensus        79 ~~-~~L~-~L~l~~~~~~~~~~~~~~~l~~~~~L~--~L~ls~~~~~~~~~~~l---------------~~~l~~~~~~L  139 (319)
T cd00116          79 KG-CGLQ-ELDLSDNALGPDGCGVLESLLRSSSLQ--ELKLNNNGLGDRGLRLL---------------AKGLKDLPPAL  139 (319)
T ss_pred             hc-Ccee-EEEccCCCCChhHHHHHHHHhccCccc--EEEeeCCccchHHHHHH---------------HHHHHhCCCCc
Confidence            44 6788 88888887763222222222   3388  88888887764322211               1224445 778


Q ss_pred             ceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCccccc----chhhhcCCCCCCEE
Q psy11648        142 ETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDL----NGNLFRHLYNLQEL  217 (584)
Q Consensus       142 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L  217 (584)
                      +.|++++|.+++.....+                    ...+. .+++|++|++++|.+.+.    .+..+..+++|++|
T Consensus       140 ~~L~L~~n~l~~~~~~~~--------------------~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L  198 (319)
T cd00116         140 EKLVLGRNRLEGASCEAL--------------------AKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL  198 (319)
T ss_pred             eEEEcCCCcCCchHHHHH--------------------HHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEE
Confidence            888888887765322111                    11222 456788888888877631    22344556678888


Q ss_pred             EcCCCccceee--cCCccccccccceEEeecccccCCCCchhhHhhhc----CCCCCEEEccCcccccc----ccccccC
Q psy11648        218 SLSFNKLQIIE--LNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKN----LNTLEWLAMDNNNIKNI----RNYSLYN  287 (584)
Q Consensus       218 ~l~~~~l~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~----~~~L~~L~l~~~~l~~~----~~~~l~~  287 (584)
                      ++++|.+.+..  .....+..+++|++|++++|.+. +.-...+. ..    .+.|++|++++|.++..    ....+..
T Consensus       199 ~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~-~~~~~~l~-~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~  276 (319)
T cd00116         199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT-DAGAAALA-SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE  276 (319)
T ss_pred             eccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc-hHHHHHHH-HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc
Confidence            88877664321  01233445566777777776654 21111111 11    35666666666665411    1112334


Q ss_pred             CCCCcEEEcccCCCc
Q psy11648        288 LTSLNYINLEYNKIS  302 (584)
Q Consensus       288 l~~L~~L~l~~~~l~  302 (584)
                      +++|+++++++|.++
T Consensus       277 ~~~L~~l~l~~N~l~  291 (319)
T cd00116         277 KESLLELDLRGNKFG  291 (319)
T ss_pred             CCCccEEECCCCCCc
Confidence            456666666666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=3.7e-17  Score=160.34  Aligned_cols=282  Identities=22%  Similarity=0.218  Sum_probs=151.8

Q ss_pred             EeecccccCCCCchhhHhhhcCCCCCEEEccCcccccc----ccccccCCCCCcEEEcccCCCcccccccccccccCCcc
Q psy11648        243 LEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNI----RNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLK  318 (584)
Q Consensus       243 L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~  318 (584)
                      |++..+.+........+  ..+.+|++++++++.++..    ....+...+.+++++++++.+...+..+          
T Consensus         3 l~L~~~~l~~~~~~~~~--~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~----------   70 (319)
T cd00116           3 LSLKGELLKTERATELL--PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL----------   70 (319)
T ss_pred             cccccCcccccchHHHH--HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH----------
Confidence            45555555423333322  5666677777777776421    1223445566777777666543211110          


Q ss_pred             EEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcC---CCEEeccCCCCCcc----CCccCCCC-CCCc
Q psy11648        319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN---MLNIVLSFNQIKYI----YPNAFVNL-PNLV  390 (584)
Q Consensus       319 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~~----~~~~~~~~-~~L~  390 (584)
                                ...+..+..+++|++|++++|.+....+..+..+..   |+.|++++|.+.+.    ....+..+ ++|+
T Consensus        71 ----------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~  140 (319)
T cd00116          71 ----------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE  140 (319)
T ss_pred             ----------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence                      011122344556666666666555433333333333   66666666655421    11223344 6666


Q ss_pred             EEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCCh----hhHHHhhCCC
Q psy11648        391 KLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV----NFLQTFADSL  466 (584)
Q Consensus       391 ~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~~L  466 (584)
                      ++++++|.+++.....+..                        .+..++.|++|++++|.++....    ..+... ++|
T Consensus       141 ~L~L~~n~l~~~~~~~~~~------------------------~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L  195 (319)
T cd00116         141 KLVLGRNRLEGASCEALAK------------------------ALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNL  195 (319)
T ss_pred             EEEcCCCcCCchHHHHHHH------------------------HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCC
Confidence            7777766665432221111                        01123556666776666552111    112222 477


Q ss_pred             cEEEccCCcccccC----ccccCCCcccCeeeccCccccccccccc-----CCCCCccEEECCCCCCCCc----Cccccc
Q psy11648        467 RKLYLDFNEIKHLD----ATAFGNLDVLELLSLEHNNIAVVVKRTF-----IGMPNLQIIDLSFNEISML----TGEQFY  533 (584)
Q Consensus       467 ~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~ls~n~i~~~----~~~~~~  533 (584)
                      ++|++++|.+.+..    ...+..+++|++|++++|.+.+.....+     ...+.|++|++++|.+++.    ....+.
T Consensus       196 ~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~  275 (319)
T cd00116         196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA  275 (319)
T ss_pred             CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh
Confidence            77777777665332    2345567778888888887765222111     1247888888888887621    123345


Q ss_pred             CCCCccEEEcCCCcCCc-----cCccccCC-CCcceEECCCCCC
Q psy11648        534 FSFKLRILNISHNRLRS-----LPRDVFSN-TIIEKLDISYNQD  571 (584)
Q Consensus       534 ~~~~L~~L~L~~n~l~~-----lp~~l~~~-~~L~~l~l~~n~l  571 (584)
                      .+++|+++++++|.++.     +...+... +.|+.+++.+|++
T Consensus       276 ~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         276 EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            56788888888888882     33334444 6888999888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.51  E-value=2.8e-16  Score=127.98  Aligned_cols=161  Identities=29%  Similarity=0.388  Sum_probs=133.2

Q ss_pred             cCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccC
Q psy11648        412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE  491 (584)
Q Consensus       412 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~  491 (584)
                      ....++.+.+++|+++.+++....  +.+|+.|++++|+++++| ..++.+ +.|+.|.+..|.+... |..|+.++.|+
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~--l~nlevln~~nnqie~lp-~~issl-~klr~lnvgmnrl~~l-prgfgs~p~le  105 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAE--LKNLEVLNLSNNQIEELP-TSISSL-PKLRILNVGMNRLNIL-PRGFGSFPALE  105 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHH--hhhhhhhhcccchhhhcC-hhhhhc-hhhhheecchhhhhcC-ccccCCCchhh
Confidence            344556667777777766665543  578999999999999998 455666 8999999998887654 56789999999


Q ss_pred             eeeccCccccc-ccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCC
Q psy11648        492 LLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ  570 (584)
Q Consensus       492 ~L~l~~n~~~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~  570 (584)
                      .||+.+|++.. ..|..|-.+..|+-|.++.|.+.-++++ .+.+++|+.|.+.+|.+-++|.+++.+++|++|.|.+|.
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence            99999988765 5677788889999999999998777665 678999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy11648        571 DKIRPGRE  578 (584)
Q Consensus       571 l~~~p~~~  578 (584)
                      ++.+|+++
T Consensus       185 l~vlppel  192 (264)
T KOG0617|consen  185 LTVLPPEL  192 (264)
T ss_pred             eeecChhh
Confidence            99888764

>KOG0617|consensus

Probab=99.45  E-value=2.2e-15  Score=122.88  Aligned_cols=163  Identities=26%  Similarity=0.393  Sum_probs=141.4

Q ss_pred             hhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCC
Q psy11648        135 EKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNL  214 (584)
Q Consensus       135 l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  214 (584)
                      +..+.+++.|.++.|+++..++                         .++ .+.+|+.|++.+|+++..+. .+..++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vpp-------------------------nia-~l~nlevln~~nnqie~lp~-~issl~kl   81 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPP-------------------------NIA-ELKNLEVLNLSNNQIEELPT-SISSLPKL   81 (264)
T ss_pred             ccchhhhhhhhcccCceeecCC-------------------------cHH-HhhhhhhhhcccchhhhcCh-hhhhchhh
Confidence            4567888999999999888754                         444 78999999999999988765 78899999


Q ss_pred             CEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEE
Q psy11648        215 QELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI  294 (584)
Q Consensus       215 ~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  294 (584)
                      +.|++.-|++..   .|..|+.++.|+.|++.+|.+....+|..+|  .++.|+.|++++|.+..+++ .++++++|+.|
T Consensus        82 r~lnvgmnrl~~---lprgfgs~p~levldltynnl~e~~lpgnff--~m~tlralyl~dndfe~lp~-dvg~lt~lqil  155 (264)
T KOG0617|consen   82 RILNVGMNRLNI---LPRGFGSFPALEVLDLTYNNLNENSLPGNFF--YMTTLRALYLGDNDFEILPP-DVGKLTNLQIL  155 (264)
T ss_pred             hheecchhhhhc---CccccCCCchhhhhhccccccccccCCcchh--HHHHHHHHHhcCCCcccCCh-hhhhhcceeEE
Confidence            999999888765   4899999999999999999998778898887  88899999999999998887 78999999999


Q ss_pred             EcccCCCcccccccccccccCCccEEEcCCCcccccccc
Q psy11648        295 NLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESD  333 (584)
Q Consensus       295 ~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  333 (584)
                      .+++|.+-++|..+..   +..|++|++.+|.++-.+|.
T Consensus       156 ~lrdndll~lpkeig~---lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  156 SLRDNDLLSLPKEIGD---LTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             eeccCchhhCcHHHHH---HHHHHHHhcccceeeecChh
Confidence            9999999888887655   78999999999988876543

>KOG1909|consensus

Probab=99.30  E-value=1.4e-13  Score=125.44  Aligned_cols=203  Identities=16%  Similarity=0.182  Sum_probs=137.6

Q ss_pred             cceeeEEEecCcccc-ccc---ccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCcccee
Q psy11648         69 ACYDLTLKITNTQIE-ELP---SGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETL  144 (584)
Q Consensus        69 ~~L~~~L~ls~n~i~-~l~---~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L  144 (584)
                      ++|+ .||||.|.++ .-+   ..+...+..|+  +|.|.+|-+.......++.....+..      ......-++|+.+
T Consensus        92 ~~L~-~ldLSDNA~G~~g~~~l~~ll~s~~~L~--eL~L~N~Glg~~ag~~l~~al~~l~~------~kk~~~~~~Lrv~  162 (382)
T KOG1909|consen   92 PKLQ-KLDLSDNAFGPKGIRGLEELLSSCTDLE--ELYLNNCGLGPEAGGRLGRALFELAV------NKKAASKPKLRVF  162 (382)
T ss_pred             Ccee-EeeccccccCccchHHHHHHHHhccCHH--HHhhhcCCCChhHHHHHHHHHHHHHH------HhccCCCcceEEE
Confidence            6888 8899988877 111   22344466699  99999997765555554432111100      1122344689999


Q ss_pred             eccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccc----cchhhhcCCCCCCEEEcC
Q psy11648        145 LLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITD----LNGNLFRHLYNLQELSLS  220 (584)
Q Consensus       145 ~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~  220 (584)
                      ..+.|++...+..+++.                    .|. ..+.|+.+.++.|.+..    .....+..+++|+.||+.
T Consensus       163 i~~rNrlen~ga~~~A~--------------------~~~-~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~  221 (382)
T KOG1909|consen  163 ICGRNRLENGGATALAE--------------------AFQ-SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLR  221 (382)
T ss_pred             EeeccccccccHHHHHH--------------------HHH-hccccceEEEecccccCchhHHHHHHHHhCCcceeeecc
Confidence            99999888876655443                    232 56889999999888763    344567889999999999


Q ss_pred             CCcccee--ecCCccccccccceEEeecccccCCC---CchhhHhhhcCCCCCEEEccCcccccc----ccccccCCCCC
Q psy11648        221 FNKLQII--ELNSNVFDVFEKLQLLEISFSLFNSN---EFPYYILNKNLNTLEWLAMDNNNIKNI----RNYSLYNLTSL  291 (584)
Q Consensus       221 ~~~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~---~l~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~l~~L  291 (584)
                      +|-++..  ......+..+++|+.|++++|.+.+.   .+...+- ...|+|+++.+.+|.++.-    ....+...+.|
T Consensus       222 DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~-~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL  300 (382)
T KOG1909|consen  222 DNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK-ESAPSLEVLELAGNEITRDAALALAACMAEKPDL  300 (382)
T ss_pred             cchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh-ccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence            9877532  11345677778999999999987631   2334443 5678999999999988732    22244557889


Q ss_pred             cEEEcccCCCc
Q psy11648        292 NYINLEYNKIS  302 (584)
Q Consensus       292 ~~L~l~~~~l~  302 (584)
                      ..|++++|++.
T Consensus       301 ~kLnLngN~l~  311 (382)
T KOG1909|consen  301 EKLNLNGNRLG  311 (382)
T ss_pred             HHhcCCccccc
Confidence            99999999883

>KOG1909|consensus

Probab=99.30  E-value=5.6e-13  Score=121.64  Aligned_cols=187  Identities=21%  Similarity=0.241  Sum_probs=121.9

Q ss_pred             CCCCCCcEEecCCCCCCCCChhhhccc-ccCCCCceEECCCCccccccccc------------cccccCcccEEEccCCC
Q psy11648        384 VNLPNLVKLDLQDNKLKDFNLNVFSNI-TSKQTPMNLNLSNNYITNLYEND------------KKQAPIYIKSLDLSNNR  450 (584)
Q Consensus       384 ~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~~~~l~~L~l~~~~l~~~~~~~------------~~~~~~~L~~L~l~~~~  450 (584)
                      ..+|.|+++++|+|.+....+..|..+ ..+..|+.|.+.+|.+....+..            .....+.|++++...|+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            344555555555555444333333221 12334455555555444322221            12345788899999888


Q ss_pred             CCCCChh----hHHHhhCCCcEEEccCCccccc----CccccCCCcccCeeeccCcccccc----cccccCCCCCccEEE
Q psy11648        451 IQEVPVN----FLQTFADSLRKLYLDFNEIKHL----DATAFGNLDVLELLSLEHNNIAVV----VKRTFIGMPNLQIID  518 (584)
Q Consensus       451 l~~~~~~----~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~  518 (584)
                      +.+-+..    .|... +.|+.+.+..|.+...    ...+|..|+.|+.||+.+|-++..    ....+..++.|++|+
T Consensus       169 len~ga~~~A~~~~~~-~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  169 LENGGATALAEAFQSH-PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             cccccHHHHHHHHHhc-cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            8765543    34444 7888899988877532    335678899999999999987653    345677788899999


Q ss_pred             CCCCCCCCcCcccc-----cCCCCccEEEcCCCcCC-----ccCccccCCCCcceEECCCCCC
Q psy11648        519 LSFNEISMLTGEQF-----YFSFKLRILNISHNRLR-----SLPRDVFSNTIIEKLDISYNQD  571 (584)
Q Consensus       519 ls~n~i~~~~~~~~-----~~~~~L~~L~L~~n~l~-----~lp~~l~~~~~L~~l~l~~n~l  571 (584)
                      +++|.+..-....|     ...|+|+.|.+.+|.++     .+..++...+.|+.|+|++|.+
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            99998874333322     24688999999999888     3555667788999999999988

>KOG3207|consensus

Probab=99.21  E-value=3.7e-12  Score=119.62  Aligned_cols=209  Identities=27%  Similarity=0.282  Sum_probs=107.5

Q ss_pred             CcCCCEEeccCCCCCccCC-ccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCc
Q psy11648        362 LNNMLNIVLSFNQIKYIYP-NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY  440 (584)
Q Consensus       362 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~  440 (584)
                      +.+|+.+.++++.+...+. +....|+.++.|+++.|-+....+ ...-+..++.|+.|+++.|.+............+.
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3344444444444433211 123344444445544444333211 11111233444444444444443333333333566


Q ss_pred             ccEEEccCCCCCCCChh-hHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccc-ccccCCCCCccEEE
Q psy11648        441 IKSLDLSNNRIQEVPVN-FLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV-KRTFIGMPNLQIID  518 (584)
Q Consensus       441 L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~  518 (584)
                      ++.|.+++|.++.-... ....+ |+|+.|++.+|..-........-+..|++|||++|.+.+.. ......++.|..|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~f-Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTF-PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhC-CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            77777777776622222 23334 77777777777422222222334556777777777665432 12345667777777


Q ss_pred             CCCCCCCCcCcccc------cCCCCccEEEcCCCcCCccCc--cccCCCCcceEECCCCCCC
Q psy11648        519 LSFNEISMLTGEQF------YFSFKLRILNISHNRLRSLPR--DVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       519 ls~n~i~~~~~~~~------~~~~~L~~L~L~~n~l~~lp~--~l~~~~~L~~l~l~~n~l~  572 (584)
                      ++.+.+..+.....      ..+++|++|++..|+++.++.  .++.+++|+.+.+-.|.++
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            77777664332222      346777888888877765543  3445567777777777665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.16  E-value=2.8e-11  Score=103.92  Aligned_cols=109  Identities=27%  Similarity=0.387  Sum_probs=44.1

Q ss_pred             chhhhccccccccccccccccc-----ccceeeeecCCceeecCCccccccccceeeEEEecCccccccccccccccccc
Q psy11648         22 VTKLQHLGTTILKGDQLQGIFN-----SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENI   96 (584)
Q Consensus        22 l~~l~~Lr~L~l~~~~l~~l~~-----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L   96 (584)
                      +.....+|.|++.+|.|+.|..     .+|++|++++|+|+.+..  +..+ ++|+ +|++++|+|+.+++.+...+++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L-~~L~-~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGL-PRLK-TLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT-------TT---EEE--SS---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccCh-hhhh-hcccCCCCCCccccchHHhCCcC
Confidence            4566678889999999998755     689999999999999854  7777 8899 99999999999987666666669


Q ss_pred             ceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccc
Q psy11648         97 EQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDL  154 (584)
Q Consensus        97 ~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~  154 (584)
                      +  +|++++|+|.....     +             ..+..+++|++|++.+|.+...
T Consensus        91 ~--~L~L~~N~I~~l~~-----l-------------~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   91 Q--ELYLSNNKISDLNE-----L-------------EPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             ---EEE-TTS---SCCC-----C-------------GGGGG-TT--EEE-TT-GGGGS
T ss_pred             C--EEECcCCcCCChHH-----h-------------HHHHcCCCcceeeccCCcccch
Confidence            9  99999999876332     1             1256689999999999988765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=5.8e-11  Score=101.96  Aligned_cols=124  Identities=31%  Similarity=0.390  Sum_probs=39.6

Q ss_pred             cCcccEEEccCCCCCCCChhhHH-HhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQ-TFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQI  516 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  516 (584)
                      +..++.|++.+|.++.+.  .+. .+ .+|+.|++++|++..+.  .+..++.|++|++++|.++.........+|+|++
T Consensus        18 ~~~~~~L~L~~n~I~~Ie--~L~~~l-~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE--NLGATL-DKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT--TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccc--chhhhh-cCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            445677777777766553  232 33 66777777777776553  3556677777777777776543222234677777


Q ss_pred             EECCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc----cccCCCCcceEEC
Q psy11648        517 IDLSFNEISMLTG-EQFYFSFKLRILNISHNRLRSLPR----DVFSNTIIEKLDI  566 (584)
Q Consensus       517 L~ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~lp~----~l~~~~~L~~l~l  566 (584)
                      |++++|+|..+.. ..+..+++|+.|++.+|.++.-+.    .+..+|+|+.||-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            7777777664322 334566777777777776664322    3444567776664

>KOG1259|consensus

Probab=99.11  E-value=2.4e-11  Score=108.52  Aligned_cols=132  Identities=25%  Similarity=0.306  Sum_probs=97.0

Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII  517 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  517 (584)
                      +..|+++|+++|.++.+. +...-. +.++.|++++|.+.....  +..+++|++||+++|.++... .+-..+.+.+.|
T Consensus       283 Wq~LtelDLS~N~I~~iD-ESvKL~-Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQID-ESVKLA-PKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccchhhhh-hhhhhc-cceeEEeccccceeeehh--hhhcccceEeecccchhHhhh-hhHhhhcCEeee
Confidence            356788888888887776 344444 888888888888776543  667788888888888776543 234567788888


Q ss_pred             ECCCCCCCCcCcccccCCCCccEEEcCCCcCCccC--ccccCCCCcceEECCCCCCCCCCC
Q psy11648        518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP--RDVFSNTIIEKLDISYNQDKIRPG  576 (584)
Q Consensus       518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp--~~l~~~~~L~~l~l~~n~l~~~p~  576 (584)
                      .+++|.+..+.  .+..+-+|..|++++|+|..+.  ..++++|-|+.+.+.+||+..+|+
T Consensus       358 ~La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  358 KLAQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             ehhhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            88888876553  2556778888888888888543  367778888999999998887664

>KOG3207|consensus

Probab=99.09  E-value=1.6e-11  Score=115.39  Aligned_cols=189  Identities=23%  Similarity=0.237  Sum_probs=139.5

Q ss_pred             CCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccc-cccccCcccEEEccCCCCCCCChhhHHHhh
Q psy11648        385 NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND-KKQAPIYIKSLDLSNNRIQEVPVNFLQTFA  463 (584)
Q Consensus       385 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  463 (584)
                      ++.+|+++.++++.+...+..  .....++.++.|++++|-+....... ....+|+|+.|+++.|.+.....+......
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            578899999999987665433  22335678999999999877544322 234589999999999987633222222233


Q ss_pred             CCCcEEEccCCcccccC-ccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcC-cccccCCCCccEE
Q psy11648        464 DSLRKLYLDFNEIKHLD-ATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLT-GEQFYFSFKLRIL  541 (584)
Q Consensus       464 ~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~-~~~~~~~~~L~~L  541 (584)
                      ++|+.|.+++|.++.-. ......+|+|+.|++..|.....-.....-+..|++|||++|++-... ......+|.|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            89999999999987332 234567899999999999643333345566889999999999877554 2335678999999


Q ss_pred             EcCCCcCCc--cCcc-----ccCCCCcceEECCCCCCCCCC
Q psy11648        542 NISHNRLRS--LPRD-----VFSNTIIEKLDISYNQDKIRP  575 (584)
Q Consensus       542 ~L~~n~l~~--lp~~-----l~~~~~L~~l~l~~n~l~~~p  575 (584)
                      +++.|.+.+  +|++     ...+++|+.|++..|++...+
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence            999999994  5655     556699999999999996433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.94  E-value=7.4e-10  Score=78.08  Aligned_cols=59  Identities=32%  Similarity=0.506  Sum_probs=29.0

Q ss_pred             ccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCc
Q psy11648        489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNR  547 (584)
Q Consensus       489 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~  547 (584)
                      +|++|++++|.+....+..|..+++|++|++++|+++.++++.|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444444444445555555555555554444445555555555555544

...

>KOG1259|consensus

Probab=98.94  E-value=2.8e-10  Score=101.89  Aligned_cols=132  Identities=28%  Similarity=0.242  Sum_probs=80.6

Q ss_pred             CCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCee
Q psy11648        414 QTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELL  493 (584)
Q Consensus       414 ~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  493 (584)
                      ..++.+++++|.++.+...+..  .|.++.|+++.|++..+.  .++.+ ++|+.|++++|.+..... +-..+-+.+.|
T Consensus       284 q~LtelDLS~N~I~~iDESvKL--~Pkir~L~lS~N~i~~v~--nLa~L-~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL  357 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKL--APKLRRLILSQNRIRTVQ--NLAEL-PQLQLLDLSGNLLAECVG-WHLKLGNIKTL  357 (490)
T ss_pred             hhhhhccccccchhhhhhhhhh--ccceeEEeccccceeeeh--hhhhc-ccceEeecccchhHhhhh-hHhhhcCEeee
Confidence            3444555555554444333333  467777777777776554  25555 777777777776654432 22345667777


Q ss_pred             eccCcccccccccccCCCCCccEEECCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc
Q psy11648        494 SLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTG-EQFYFSFKLRILNISHNRLRSLPR  553 (584)
Q Consensus       494 ~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~lp~  553 (584)
                      .++.|.+...  ..+..+-+|..||+++|+|..... ..++++|.|+++.|-+|.+..+|+
T Consensus       358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            7777777655  345666777777777777663321 345667777777777777776553

>KOG0532|consensus

Probab=98.91  E-value=8.4e-11  Score=114.24  Aligned_cols=152  Identities=24%  Similarity=0.277  Sum_probs=114.8

Q ss_pred             ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeecc
Q psy11648        417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE  496 (584)
Q Consensus       417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  496 (584)
                      ..+.+..|.+..++....  .+..|..++++.|++..+|...+ .  --|+.|.+++|+++.++.+ ++..+.|..||.+
T Consensus       101 e~liLy~n~~r~ip~~i~--~L~~lt~l~ls~NqlS~lp~~lC-~--lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s  174 (722)
T KOG0532|consen  101 ESLILYHNCIRTIPEAIC--NLEALTFLDLSSNQLSHLPDGLC-D--LPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVS  174 (722)
T ss_pred             HHHHHHhccceecchhhh--hhhHHHHhhhccchhhcCChhhh-c--CcceeEEEecCccccCCcc-cccchhHHHhhhh
Confidence            444444444444433322  24677888888888888875433 3  4588888888888876554 4578889999999


Q ss_pred             CcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCC
Q psy11648        497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPG  576 (584)
Q Consensus       497 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~  576 (584)
                      .|.+... |..++.+.+|+.|++..|++..++++. . .-.|..||++.|++..||-++..+..|++|.|.+|++.+.|.
T Consensus       175 ~nei~sl-psql~~l~slr~l~vrRn~l~~lp~El-~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  175 KNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLPEEL-C-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             hhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCCHHH-h-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence            9988644 456788889999999999988887764 3 457899999999999999999999999999999999998886


Q ss_pred             C
Q psy11648        577 R  577 (584)
Q Consensus       577 ~  577 (584)
                      .
T Consensus       252 q  252 (722)
T KOG0532|consen  252 Q  252 (722)
T ss_pred             H
Confidence            5

>KOG0532|consensus

Probab=98.89  E-value=1.3e-10  Score=112.97  Aligned_cols=192  Identities=20%  Similarity=0.224  Sum_probs=132.6

Q ss_pred             EEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecccccccc
Q psy11648         74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITD  153 (584)
Q Consensus        74 ~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~  153 (584)
                      ..|++.|++.++|..+..... |.  .+.+.+|.+.                    .+|..+.++..|++++++.|+++.
T Consensus        79 ~aDlsrNR~~elp~~~~~f~~-Le--~liLy~n~~r--------------------~ip~~i~~L~~lt~l~ls~NqlS~  135 (722)
T KOG0532|consen   79 FADLSRNRFSELPEEACAFVS-LE--SLILYHNCIR--------------------TIPEAICNLEALTFLDLSSNQLSH  135 (722)
T ss_pred             hhhccccccccCchHHHHHHH-HH--HHHHHhccce--------------------ecchhhhhhhHHHHhhhccchhhc
Confidence            466777777777766666555 66  6666666554                    456667777888999999988887


Q ss_pred             ccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCcc
Q psy11648        154 LNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV  233 (584)
Q Consensus       154 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  233 (584)
                      .+..                         +  +..-|+.|-+++|+++..+. .++....|..||.+.|.+...   +.-
T Consensus       136 lp~~-------------------------l--C~lpLkvli~sNNkl~~lp~-~ig~~~tl~~ld~s~nei~sl---psq  184 (722)
T KOG0532|consen  136 LPDG-------------------------L--CDLPLKVLIVSNNKLTSLPE-EIGLLPTLAHLDVSKNEIQSL---PSQ  184 (722)
T ss_pred             CChh-------------------------h--hcCcceeEEEecCccccCCc-ccccchhHHHhhhhhhhhhhc---hHH
Confidence            7442                         1  34567777888887766544 466677788888888877664   666


Q ss_pred             ccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccc
Q psy11648        234 FDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI  313 (584)
Q Consensus       234 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~  313 (584)
                      +..+.+|+.|++..|.+.  .+|...  . .-.|..||++.|++..++. .|.++..|++|.+.+|.+..-|..+...+.
T Consensus       185 l~~l~slr~l~vrRn~l~--~lp~El--~-~LpLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLqSPPAqIC~kGk  258 (722)
T KOG0532|consen  185 LGYLTSLRDLNVRRNHLE--DLPEEL--C-SLPLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQSPPAQICEKGK  258 (722)
T ss_pred             hhhHHHHHHHHHhhhhhh--hCCHHH--h-CCceeeeecccCceeecch-hhhhhhhheeeeeccCCCCCChHHHHhccc
Confidence            777778888888887774  677765  3 4457888888888887765 788888888888888887765555443322


Q ss_pred             cCCccEEEcCCC
Q psy11648        314 HKRLKEIRLSNN  325 (584)
Q Consensus       314 ~~~L~~L~l~~~  325 (584)
                      ..-.++|+...|
T Consensus       259 VHIFKyL~~qA~  270 (722)
T KOG0532|consen  259 VHIFKYLSTQAC  270 (722)
T ss_pred             eeeeeeecchhc
Confidence            334455555555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=2.7e-09  Score=75.20  Aligned_cols=61  Identities=34%  Similarity=0.554  Sum_probs=48.3

Q ss_pred             CCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCC
Q psy11648        464 DSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI  524 (584)
Q Consensus       464 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i  524 (584)
                      ++|++|++++|++..+++..|.++++|++|++++|.+....+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677788888888777777788888888888888888777777788888888888888764

...

>PLN03150 hypothetical protein; Provisional

Probab=98.83  E-value=6.9e-09  Score=109.61  Aligned_cols=107  Identities=21%  Similarity=0.273  Sum_probs=74.9

Q ss_pred             CcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCC
Q psy11648        466 LRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISH  545 (584)
Q Consensus       466 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~  545 (584)
                      ++.|+|++|.+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+..|+.+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56677777777666666677777777777777777777776777777777777777777776677777777777777777


Q ss_pred             CcCC-ccCccccCC-CCcceEECCCCCCC
Q psy11648        546 NRLR-SLPRDVFSN-TIIEKLDISYNQDK  572 (584)
Q Consensus       546 n~l~-~lp~~l~~~-~~L~~l~l~~n~l~  572 (584)
                      |+++ .+|..+... .++..+++.+|+..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccc
Confidence            7776 566665543 45666777777654

>KOG4658|consensus

Probab=98.80  E-value=6.1e-09  Score=112.35  Aligned_cols=91  Identities=23%  Similarity=0.194  Sum_probs=44.0

Q ss_pred             CCCcEEEccCCcccccCccccCCCcccCeeeccCcccccc-cccccCCCCCccEEECCCCCCCCcCccc---ccCCCCcc
Q psy11648        464 DSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV-VKRTFIGMPNLQIIDLSFNEISMLTGEQ---FYFSFKLR  539 (584)
Q Consensus       464 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ls~n~i~~~~~~~---~~~~~~L~  539 (584)
                      ++|+.|.+..|.....+......+..++++.+..+.+.+. .......++++..+.+++-.+..+..+.   +..+|.+.
T Consensus       770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~  849 (889)
T KOG4658|consen  770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLS  849 (889)
T ss_pred             CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcccc
Confidence            5666666665554444333344444444444555544444 2334445555555555443332221111   23456666


Q ss_pred             EEEcCCC--cCCccCcc
Q psy11648        540 ILNISHN--RLRSLPRD  554 (584)
Q Consensus       540 ~L~L~~n--~l~~lp~~  554 (584)
                      ++.+.+|  .+..+|+.
T Consensus       850 ~~~i~~~~~~~~~~~~~  866 (889)
T KOG4658|consen  850 TLTIVGCEEKLKEYPDG  866 (889)
T ss_pred             ccceeccccceeecCCc
Confidence            7777775  44455543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.79  E-value=9.6e-09  Score=103.69  Aligned_cols=196  Identities=31%  Similarity=0.390  Sum_probs=109.9

Q ss_pred             EEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCC-CCcEEecCCCCCCCCChhhhcccccCCCCceEEC
Q psy11648        343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP-NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL  421 (584)
Q Consensus       343 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l  421 (584)
                      .+....+.+.... ......+.++.+++.++.++++ +....... +|+.|++++|.+...+    .....++.++.|++
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~----~~~~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESLP----SPLRNLPNLKNLDL  170 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhhh----hhhhcccccccccc
Confidence            4666666653221 2234456778888888888777 33344443 7888888888776652    12224456666666


Q ss_pred             CCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccc
Q psy11648        422 SNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA  501 (584)
Q Consensus       422 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  501 (584)
                      +.|++.+++....  ..+.++.|++++|.+..+|... ... ..|+++.+++|.+... +..+..+.++..+.+.+|.+.
T Consensus       171 ~~N~l~~l~~~~~--~~~~L~~L~ls~N~i~~l~~~~-~~~-~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         171 SFNDLSDLPKLLS--NLSNLNNLDLSGNKISDLPPEI-ELL-SALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             CCchhhhhhhhhh--hhhhhhheeccCCccccCchhh-hhh-hhhhhhhhcCCcceec-chhhhhcccccccccCCceee
Confidence            6666666555431  2456666666666666666322 121 4466666666642222 123445555555666666554


Q ss_pred             cccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy11648        502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP  552 (584)
Q Consensus       502 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp  552 (584)
                      .. +..++.+++++.|++++|.++.+..  +.....++.|+++++.+..++
T Consensus       246 ~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         246 DL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             ec-cchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence            42 2344555556666666666665544  455566666666666555433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.77  E-value=7.3e-09  Score=104.57  Aligned_cols=187  Identities=31%  Similarity=0.403  Sum_probs=118.0

Q ss_pred             cccCCCccceeccccccccchhhhccccccccccccccccc-----c-cceeeeecCCceeecCCccccccccceeeEEE
Q psy11648          3 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN-----S-KLRELEITGKDLKFIDPSAFDNIDACYDLTLK   76 (584)
Q Consensus         3 l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~-----~-~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~   76 (584)
                      ++++.|.+......     +..++.++.|++.++++++++.     . +|+.|++++|.+..+. ..+..+ ++|+ .|+
T Consensus        98 l~~~~~~~~~~~~~-----~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l-~~L~-~L~  169 (394)
T COG4886          98 LDLNLNRLRSNISE-----LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNL-PNLK-NLD  169 (394)
T ss_pred             eeccccccccCchh-----hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhcc-cccc-ccc
Confidence            45555555322222     4455667777888887777766     2 7888888888777753 234444 7778 888


Q ss_pred             ecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccc
Q psy11648         77 ITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNG  156 (584)
Q Consensus        77 ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~  156 (584)
                      +++|++..+|........ |+  .|++++|++..+..                    ......+|+++.+++|.+...  
T Consensus       170 l~~N~l~~l~~~~~~~~~-L~--~L~ls~N~i~~l~~--------------------~~~~~~~L~~l~~~~N~~~~~--  224 (394)
T COG4886         170 LSFNDLSDLPKLLSNLSN-LN--NLDLSGNKISDLPP--------------------EIELLSALEELDLSNNSIIEL--  224 (394)
T ss_pred             cCCchhhhhhhhhhhhhh-hh--heeccCCccccCch--------------------hhhhhhhhhhhhhcCCcceec--
Confidence            888888877776655555 77  78888887765433                    333445688888888853332  


Q ss_pred             cccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccc
Q psy11648        157 NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDV  236 (584)
Q Consensus       157 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  236 (584)
                                             +..+. .+.++..+.+.++.+... +..++.++.++.|++++|.+..+   +. +..
T Consensus       225 -----------------------~~~~~-~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i---~~-~~~  275 (394)
T COG4886         225 -----------------------LSSLS-NLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI---SS-LGS  275 (394)
T ss_pred             -----------------------chhhh-hcccccccccCCceeeec-cchhccccccceecccccccccc---cc-ccc
Confidence                                   11122 556666666666665543 23466667777777777776655   22 666


Q ss_pred             cccceEEeecccccC
Q psy11648        237 FEKLQLLEISFSLFN  251 (584)
Q Consensus       237 l~~L~~L~l~~~~~~  251 (584)
                      ..+++.|+++++.+.
T Consensus       276 ~~~l~~L~~s~n~~~  290 (394)
T COG4886         276 LTNLRELDLSGNSLS  290 (394)
T ss_pred             cCccCEEeccCcccc
Confidence            677777777777665

>KOG4658|consensus

Probab=98.76  E-value=2.1e-08  Score=108.33  Aligned_cols=128  Identities=22%  Similarity=0.225  Sum_probs=68.6

Q ss_pred             ccceeeeecCCceeecCCccccccccceeeEEEecCcc--cccccccccccccccceeeeecCCCceeeechhhhccchh
Q psy11648         44 SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQ--IEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT  121 (584)
Q Consensus        44 ~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~--i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~  121 (584)
                      ..+|...+-+|.+..+....-   ++.|+ +|-+.+|.  +..++.+.|...+.|+  +|||++|.=             
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~---~~~L~-tLll~~n~~~l~~is~~ff~~m~~Lr--VLDLs~~~~-------------  583 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSE---NPKLR-TLLLQRNSDWLLEISGEFFRSLPLLR--VLDLSGNSS-------------  583 (889)
T ss_pred             hheeEEEEeccchhhccCCCC---CCccc-eEEEeecchhhhhcCHHHHhhCcceE--EEECCCCCc-------------
Confidence            455555555555544332221   13466 66666664  5566666666666666  666666421             


Q ss_pred             cccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCccc
Q psy11648        122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKIT  201 (584)
Q Consensus       122 l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  201 (584)
                            +..+|..++.+-+|++|+++++.+..++                         ..+. ++..|.+|++..+.-.
T Consensus       584 ------l~~LP~~I~~Li~LryL~L~~t~I~~LP-------------------------~~l~-~Lk~L~~Lnl~~~~~l  631 (889)
T KOG4658|consen  584 ------LSKLPSSIGELVHLRYLDLSDTGISHLP-------------------------SGLG-NLKKLIYLNLEVTGRL  631 (889)
T ss_pred             ------cCcCChHHhhhhhhhcccccCCCccccc-------------------------hHHH-HHHhhheecccccccc
Confidence                  1144555566666666666666666552                         2332 4555555665555433


Q ss_pred             ccchhhhcCCCCCCEEEcCCC
Q psy11648        202 DLNGNLFRHLYNLQELSLSFN  222 (584)
Q Consensus       202 ~~~~~~~~~~~~L~~L~l~~~  222 (584)
                      ...+.....+++||+|.+...
T Consensus       632 ~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  632 ESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccchhhhcccccEEEeecc
Confidence            333444444556666655543

>KOG2120|consensus

Probab=98.75  E-value=1.2e-09  Score=97.96  Aligned_cols=139  Identities=15%  Similarity=0.124  Sum_probs=73.2

Q ss_pred             cchhhHHHHHhhcCCC-CCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCc-cceeecCCccccc
Q psy11648        159 FRHLQKSIVKAKKNNN-NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK-LQIIELNSNVFDV  236 (584)
Q Consensus       159 ~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~  236 (584)
                      +..+.+.++++||++. ++.-....+-+.|.+|+.|.+.+.++++.+...+++..+|+.++++++. ++.. ...-.+..
T Consensus       180 ~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-~~~ll~~s  258 (419)
T KOG2120|consen  180 FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-ALQLLLSS  258 (419)
T ss_pred             hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-HHHHHHHh
Confidence            3344456777777733 2222223333457777777777777777666677777777777777653 2211 12234555


Q ss_pred             cccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCcccc---ccccccccCCCCCcEEEcccC
Q psy11648        237 FEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK---NIRNYSLYNLTSLNYINLEYN  299 (584)
Q Consensus       237 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~---~~~~~~l~~l~~L~~L~l~~~  299 (584)
                      ++.|..|+++.|....+.+...+. .--++|..|+++|+.-.   .-...-...+|+|.+||+++|
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~-hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVA-HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHh-hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence            666777777766554222222221 23345666666654211   001111234556666666655

>KOG2120|consensus

Probab=98.72  E-value=6.2e-10  Score=99.62  Aligned_cols=227  Identities=19%  Similarity=0.127  Sum_probs=109.0

Q ss_pred             ccceeeeecCCceeecCCccccccccceeeEEEecCcccc--cccccccccccccceeeeecCCCceeeechhhhccchh
Q psy11648         44 SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIE--ELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT  121 (584)
Q Consensus        44 ~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~--~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~  121 (584)
                      ..-+.+|+.+..|....-..+..  ..+. ++.+...-+.  .+.+........++  ++|||...|+...   +..   
T Consensus       136 ~lW~~lDl~~r~i~p~~l~~l~~--rgV~-v~Rlar~~~~~prlae~~~~frsRlq--~lDLS~s~it~st---l~~---  204 (419)
T KOG2120|consen  136 SLWQTLDLTGRNIHPDVLGRLLS--RGVI-VFRLARSFMDQPRLAEHFSPFRSRLQ--HLDLSNSVITVST---LHG---  204 (419)
T ss_pred             cceeeeccCCCccChhHHHHHHh--CCeE-EEEcchhhhcCchhhhhhhhhhhhhH--HhhcchhheeHHH---HHH---
Confidence            44555666655555433222222  3344 4444433222  23333333333466  6666665544211   111   


Q ss_pred             cccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC--CCCCCcccchhHhhccCCcEEEcCCCc
Q psy11648        122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN--NNNNEDQVSDREKLLSNLETLLLRCNK  199 (584)
Q Consensus       122 l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~--~~~~~~~~~~~~~~~~~L~~L~l~~~~  199 (584)
                                  -++.|++|+.|.+.++++.+.....++. ..+|+.++++  +.++......+...|+.|..|++++|.
T Consensus       205 ------------iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~  271 (419)
T KOG2120|consen  205 ------------ILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF  271 (419)
T ss_pred             ------------HHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence                        1344455555555555444322211111 1244555555  333333334444467777777777776


Q ss_pred             ccccc-hhhhcC-CCCCCEEEcCCCcc--ceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCc
Q psy11648        200 ITDLN-GNLFRH-LYNLQELSLSFNKL--QIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNN  275 (584)
Q Consensus       200 ~~~~~-~~~~~~-~~~L~~L~l~~~~l--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~  275 (584)
                      +.... ...+.+ -++|+.|+++|++-  ... .+......+++|.+|++++|..........+  .+++.|++|.+++|
T Consensus       272 l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~--~kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  272 LFTEKVTVAVAHISETLTQLNLSGYRRNLQKS-HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FKFNYLQHLSLSRC  348 (419)
T ss_pred             ccchhhhHHHhhhchhhhhhhhhhhHhhhhhh-HHHHHHHhCCceeeeccccccccCchHHHHH--Hhcchheeeehhhh
Confidence            55321 111111 24677777776531  110 0122345567777777777754323333333  36777777777776


Q ss_pred             ccccccc---ccccCCCCCcEEEcccC
Q psy11648        276 NIKNIRN---YSLYNLTSLNYINLEYN  299 (584)
Q Consensus       276 ~l~~~~~---~~l~~l~~L~~L~l~~~  299 (584)
                      -..  +|   ..+...|.|.+|++.++
T Consensus       349 Y~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  349 YDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cCC--ChHHeeeeccCcceEEEEeccc
Confidence            422  11   13566778888887776

>KOG0531|consensus

Probab=98.61  E-value=6.8e-09  Score=104.83  Aligned_cols=80  Identities=28%  Similarity=0.326  Sum_probs=38.1

Q ss_pred             cCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC---ccCcc--ccCCCCcceE
Q psy11648        490 LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR---SLPRD--VFSNTIIEKL  564 (584)
Q Consensus       490 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~---~lp~~--l~~~~~L~~l  564 (584)
                      |+.+++++|.+.... ..+..+.++..|++..|++.....  +...+.+..+....+++.   ...+.  ....+.++.+
T Consensus       234 L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCcccccc-ccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            555555555554321 234455555555555555544322  233445555555555444   11111  3333555566


Q ss_pred             ECCCCCCC
Q psy11648        565 DISYNQDK  572 (584)
Q Consensus       565 ~l~~n~l~  572 (584)
                      .+.+|++.
T Consensus       311 ~~~~~~~~  318 (414)
T KOG0531|consen  311 TLELNPIR  318 (414)
T ss_pred             ccccCccc
Confidence            66655554

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=9.3e-08  Score=101.13  Aligned_cols=112  Identities=21%  Similarity=0.291  Sum_probs=95.6

Q ss_pred             cccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEEC
Q psy11648        440 YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL  519 (584)
Q Consensus       440 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  519 (584)
                      .++.|++++|.+....+..+..+ ++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.+.+|+.+..+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCC-CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            37789999999874444667777 99999999999999888888999999999999999999999999999999999999


Q ss_pred             CCCCCCCcCcccccC-CCCccEEEcCCCc-CCccC
Q psy11648        520 SFNEISMLTGEQFYF-SFKLRILNISHNR-LRSLP  552 (584)
Q Consensus       520 s~n~i~~~~~~~~~~-~~~L~~L~L~~n~-l~~lp  552 (584)
                      ++|++.+..|..+.. ..++..+++.+|. +...|
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999888887765 3467889999985 44444

>KOG0531|consensus

Probab=98.60  E-value=4.6e-09  Score=106.07  Aligned_cols=220  Identities=29%  Similarity=0.306  Sum_probs=148.9

Q ss_pred             cCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCC
Q psy11648        336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQT  415 (584)
Q Consensus       336 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  415 (584)
                      ..+..++.+++..|.+... ...+..+.++..+++.+|.+..+. ..+..+++|+.|++++|.|+.+..     +..+..
T Consensus        69 ~~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~-----l~~l~~  141 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG-----LSTLTL  141 (414)
T ss_pred             HHhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc-----hhhccc
Confidence            3455666666777766652 223566788888899988888772 226778889999999998877542     223445


Q ss_pred             CceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648        416 PMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL  495 (584)
Q Consensus       416 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  495 (584)
                      |+.|++.+|.++.+.....   +..|+.+++++|.+..+.......+ .+++.+.+.+|.+..+.  .+..+..+..+++
T Consensus       142 L~~L~l~~N~i~~~~~~~~---l~~L~~l~l~~n~i~~ie~~~~~~~-~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l  215 (414)
T KOG0531|consen  142 LKELNLSGNLISDISGLES---LKSLKLLDLSYNRIVDIENDELSEL-ISLEELDLGGNSIREIE--GLDLLKKLVLLSL  215 (414)
T ss_pred             hhhheeccCcchhccCCcc---chhhhcccCCcchhhhhhhhhhhhc-cchHHHhccCCchhccc--chHHHHHHHHhhc
Confidence            7888888888887665443   5788888888888877653113555 78888888888776443  2333445555577


Q ss_pred             cCcccccccccccCCCCC--ccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        496 EHNNIAVVVKRTFIGMPN--LQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       496 ~~n~~~~~~~~~~~~~~~--L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                      ..|.+....+  +...+.  |+.+++++|++.... +.+..+..+..|++.+|++..+. .+...+.+..+....|++.
T Consensus       216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  216 LDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccccceeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccccc-cccccchHHHhccCcchhc
Confidence            7777765422  233333  788888888887653 34566778888888888888664 4555567777777777665

>KOG4341|consensus

Probab=98.54  E-value=3.6e-09  Score=99.35  Aligned_cols=84  Identities=15%  Similarity=0.104  Sum_probs=60.2

Q ss_pred             hccccccccccccccccc--------ccceeeeecCCc-eeecCCccccccccceeeEEEecCc-ccc-ccccccccccc
Q psy11648         26 QHLGTTILKGDQLQGIFN--------SKLRELEITGKD-LKFIDPSAFDNIDACYDLTLKITNT-QIE-ELPSGLFDKIE   94 (584)
Q Consensus        26 ~~Lr~L~l~~~~l~~l~~--------~~L~~L~ls~n~-~~~~~~~~~~~~~~~L~~~L~ls~n-~i~-~l~~~~~~~~~   94 (584)
                      -.||.|.++|+.-....+        +++++|.+.++. +++.....+...|+.|+ +|++..| .|+ ..-+.+...+.
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~-~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLR-HLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhh-hhhhcccchhHHHHHHHHHHhhh
Confidence            356777888874333222        999999999884 55555556666689999 9999995 455 33445778888


Q ss_pred             ccceeeeecCCCc-eeeec
Q psy11648         95 NIEQMTLDLSHNK-LSVLN  112 (584)
Q Consensus        95 ~L~~~~L~ls~~~-l~~~~  112 (584)
                      +|.  ++++|.|. |++..
T Consensus       217 kL~--~lNlSwc~qi~~~g  233 (483)
T KOG4341|consen  217 KLK--YLNLSWCPQISGNG  233 (483)
T ss_pred             hHH--HhhhccCchhhcCc
Confidence            899  99999995 55533

>KOG4341|consensus

Probab=98.49  E-value=1.6e-08  Score=95.19  Aligned_cols=261  Identities=16%  Similarity=0.059  Sum_probs=131.8

Q ss_pred             hcCCccceeecccc-ccccccccccchhhHHHHHhhcCC--CCCCcccchhHhhccCCcEEEcCCCc-ccc-cchhhhcC
Q psy11648        136 KLLSNLETLLLRCN-KITDLNGNLFRHLQKSIVKAKKNN--NNNEDQVSDREKLLSNLETLLLRCNK-ITD-LNGNLFRH  210 (584)
Q Consensus       136 ~~~~~L~~L~l~~n-~i~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~  210 (584)
                      .+++++++|++.++ .+++..-..++..|+.++.+++..  .+++.....++..|++|+++++++|. +.+ ......++
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            34555555555555 333333334444555555555553  22333333444466777777777764 222 12233455


Q ss_pred             CCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccc-cccccccc-cCC
Q psy11648        211 LYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI-KNIRNYSL-YNL  288 (584)
Q Consensus       211 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~l-~~l  288 (584)
                      +..++.+...||.-.+.+.+...-..+.-+.++++.+|... .....+.....+..|+.++.+++.- +.....++ .++
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l-TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~  319 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL-TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC  319 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc-cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence            66666666665532111101111122233455555555322 1111222224566777777776543 22222222 345


Q ss_pred             CCCcEEEcccCC-CcccccccccccccCCccEEEcCCCcccc--cccccccCCCCCcEEEccCCcC-CCcC----hhhhc
Q psy11648        289 TSLNYINLEYNK-ISKIHNNLFHFNIHKRLKEIRLSNNYLEL--IESDTFYNLKELNTITLSYNLL-KSIK----TTSFK  360 (584)
Q Consensus       289 ~~L~~L~l~~~~-l~~i~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~-~~~~----~~~~~  360 (584)
                      ++|+.+-+++|+ ++...-.... ..++.|+.+++.++....  .....-.+|+.|+.+.++.|.. +...    ...-.
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c  398 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC  398 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence            677777777764 2222111111 126677777777664332  1222235678888888887743 3221    11113


Q ss_pred             cCcCCCEEeccCCCCC-ccCCccCCCCCCCcEEecCCCC
Q psy11648        361 NLNNMLNIVLSFNQIK-YIYPNAFVNLPNLVKLDLQDNK  398 (584)
Q Consensus       361 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~  398 (584)
                      ....+..+.++++... +...+.+..++.|+.+++.+++
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            4567888888887744 3334556678889888888876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.41  E-value=2.1e-08  Score=88.86  Aligned_cols=199  Identities=16%  Similarity=0.150  Sum_probs=110.6

Q ss_pred             cchhhhcccccccccccccc-----ccc-----ccceeeeecCCceeecC---C-------ccccccccceeeEEEecCc
Q psy11648         21 NVTKLQHLGTTILKGDQLQG-----IFN-----SKLRELEITGKDLKFID---P-------SAFDNIDACYDLTLKITNT   80 (584)
Q Consensus        21 ~l~~l~~Lr~L~l~~~~l~~-----l~~-----~~L~~L~ls~n~~~~~~---~-------~~~~~~~~~L~~~L~ls~n   80 (584)
                      .+..+..+..+++|||.|..     +..     .+|+..++|+-......   .       .++.+ |++|+ .++||.|
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk-cp~l~-~v~LSDN  102 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK-CPRLQ-KVDLSDN  102 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc-CCcce-eeecccc
Confidence            34556677777888887764     111     67777777654222211   1       22333 48888 8999988


Q ss_pred             ccc-ccc----ccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecccccccccc
Q psy11648         81 QIE-ELP----SGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLN  155 (584)
Q Consensus        81 ~i~-~l~----~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~  155 (584)
                      .++ ..|    ..+.+... |.  ||.+++|-+.......++.....+..      -......+.|++.....|++..-+
T Consensus       103 Afg~~~~e~L~d~is~~t~-l~--HL~l~NnGlGp~aG~rigkal~~la~------nKKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238         103 AFGSEFPEELGDLISSSTD-LV--HLKLNNNGLGPIAGGRIGKALFHLAY------NKKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             ccCcccchHHHHHHhcCCC-ce--eEEeecCCCCccchhHHHHHHHHHHH------HhhhccCCCceEEEeccchhccCc
Confidence            877 222    23344444 88  88888886654444433321111100      012334567888888888776653


Q ss_pred             ccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCccccc-----chhhhcCCCCCCEEEcCCCcccee--e
Q psy11648        156 GNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDL-----NGNLFRHLYNLQELSLSFNKLQII--E  228 (584)
Q Consensus       156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~--~  228 (584)
                      ...++..                    +. .-.+|+.+.+..|.|...     ....+..+++|+.||+.+|.++..  .
T Consensus       174 ~~~~a~~--------------------l~-sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~  232 (388)
T COG5238         174 KELSAAL--------------------LE-SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR  232 (388)
T ss_pred             HHHHHHH--------------------HH-hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence            3322221                    11 225777777777776532     112234567788888887766532  1


Q ss_pred             cCCccccccccceEEeecccccC
Q psy11648        229 LNSNVFDVFEKLQLLEISFSLFN  251 (584)
Q Consensus       229 ~~~~~~~~l~~L~~L~l~~~~~~  251 (584)
                      ....++..++.|+.|.+.+|.+.
T Consensus       233 ~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         233 YLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             HHHHHhcccchhhhccccchhhc
Confidence            12233444556666666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.36  E-value=3.1e-07  Score=58.92  Aligned_cols=39  Identities=26%  Similarity=0.354  Sum_probs=22.7

Q ss_pred             CccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCC
Q psy11648        537 KLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRP  575 (584)
Q Consensus       537 ~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p  575 (584)
                      +|++|++++|+|+.+|..+..+++|+.|++++|++++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            456666666666666655666666666666666666544

...

>KOG1859|consensus

Probab=98.26  E-value=2.8e-08  Score=99.81  Aligned_cols=183  Identities=22%  Similarity=0.271  Sum_probs=120.7

Q ss_pred             cchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcc---c---chhHh--hccCCcEEEcCCCccccc
Q psy11648        132 KDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ---V---SDREK--LLSNLETLLLRCNKITDL  203 (584)
Q Consensus       132 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~---~~~~~--~~~~L~~L~l~~~~~~~~  203 (584)
                      |-.+..+++|++|.+.++.+...  ..+..+...|+.|...+......   .   ..+..  ..-.|...++++|.+...
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m  179 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM  179 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence            44566789999999999987663  22334444666666653322110   0   00000  113566777777776543


Q ss_pred             chhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccc
Q psy11648        204 NGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY  283 (584)
Q Consensus       204 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~  283 (584)
                       .++++-++.++.|+|++|+++..    +.+..+++|++|++++|.+.  .+|..-. .+|. |+.|.+++|.++.+.  
T Consensus       180 -D~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~--~vp~l~~-~gc~-L~~L~lrnN~l~tL~--  248 (1096)
T KOG1859|consen  180 -DESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLR--HVPQLSM-VGCK-LQLLNLRNNALTTLR--  248 (1096)
T ss_pred             -HHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhc--cccccch-hhhh-heeeeecccHHHhhh--
Confidence             34677778899999999988765    47888899999999999875  5554432 3454 899999999888765  


Q ss_pred             cccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCccc
Q psy11648        284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLE  328 (584)
Q Consensus       284 ~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~  328 (584)
                      .+.++.+|+.||+++|-+.+.....+-. .+..|+.|++.+|.+.
T Consensus       249 gie~LksL~~LDlsyNll~~hseL~pLw-sLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  249 GIENLKSLYGLDLSYNLLSEHSELEPLW-SLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hHHhhhhhhccchhHhhhhcchhhhHHH-HHHHHHHHhhcCCccc
Confidence            4778888999999998766432211110 1667888888888654

>KOG1859|consensus

Probab=98.25  E-value=5.9e-08  Score=97.49  Aligned_cols=129  Identities=19%  Similarity=0.175  Sum_probs=86.4

Q ss_pred             CccceeeccccccccccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEE
Q psy11648        139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQEL  217 (584)
Q Consensus       139 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  217 (584)
                      ..|.+.+.+.|++..++.  --.+.+.++.|+|+ |......  .+. .+++|++||+++|.+...+.-...+|+ |+.|
T Consensus       164 n~L~~a~fsyN~L~~mD~--SLqll~ale~LnLshNk~~~v~--~Lr-~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L  237 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDE--SLQLLPALESLNLSHNKFTKVD--NLR-RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL  237 (1096)
T ss_pred             hhHhhhhcchhhHHhHHH--HHHHHHHhhhhccchhhhhhhH--HHH-hcccccccccccchhccccccchhhhh-heee
Confidence            357777777776665532  22455677777777 5555543  443 788899999998888766554444555 8888


Q ss_pred             EcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccc
Q psy11648        218 SLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN  279 (584)
Q Consensus       218 ~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~  279 (584)
                      .+++|.++..    ..+.++++|+.|++++|-+.  ......+...+..|+.|.+.+|.+..
T Consensus       238 ~lrnN~l~tL----~gie~LksL~~LDlsyNll~--~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  238 NLRNNALTTL----RGIENLKSLYGLDLSYNLLS--EHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             eecccHHHhh----hhHHhhhhhhccchhHhhhh--cchhhhHHHHHHHHHHHhhcCCcccc
Confidence            8888887755    45677888888888888765  22211111456778888888887653

>KOG2982|consensus

Probab=98.21  E-value=6.2e-07  Score=80.81  Aligned_cols=92  Identities=21%  Similarity=0.221  Sum_probs=60.1

Q ss_pred             hhHhhccCCcEEEcCCCcccc--cchhhhcCCCCCCEEEcCCCccceeecCCccc-cccccceEEeecccccCCCCchhh
Q psy11648        182 DREKLLSNLETLLLRCNKITD--LNGNLFRHLYNLQELSLSFNKLQIIELNSNVF-DVFEKLQLLEISFSLFNSNEFPYY  258 (584)
Q Consensus       182 ~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~l~~~  258 (584)
                      .|+..++.++.+++.+|.+..  .+...+.++|.|+.|+++.|.+...  + ..+ ....+|+.|.+.+..+.+......
T Consensus        65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~  141 (418)
T KOG2982|consen   65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--I-KSLPLPLKNLRVLVLNGTGLSWTQSTSS  141 (418)
T ss_pred             HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--c-ccCcccccceEEEEEcCCCCChhhhhhh
Confidence            444467788888888887764  2344567888888888888877543  1 112 345678888888877764333333


Q ss_pred             HhhhcCCCCCEEEccCcccc
Q psy11648        259 ILNKNLNTLEWLAMDNNNIK  278 (584)
Q Consensus       259 ~~~~~~~~L~~L~l~~~~l~  278 (584)
                      .  ..+|.+++|.++.|++.
T Consensus       142 l--~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  142 L--DDLPKVTELHMSDNSLR  159 (418)
T ss_pred             h--hcchhhhhhhhccchhh
Confidence            3  67777777777776433

>KOG4579|consensus

Probab=98.20  E-value=6.8e-08  Score=76.55  Aligned_cols=130  Identities=21%  Similarity=0.242  Sum_probs=84.3

Q ss_pred             cccEEEccCCCCCCCChhh--HHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648        440 YIKSLDLSNNRIQEVPVNF--LQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII  517 (584)
Q Consensus       440 ~L~~L~l~~~~l~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  517 (584)
                      .+..++++.|++..++...  +... ..|+..++++|.+...++..-..++..+.+++++|.+.+. |+.+..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~-~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKG-YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCC-ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhc
Confidence            3456777788776555322  2222 5566678888877776665555566777777777777644 4447777777777


Q ss_pred             ECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                      +++.|.+...+ +.+..+.+|-.|+..+|.+-.||..++.-+..-.+++.++++.
T Consensus       106 Nl~~N~l~~~p-~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~  159 (177)
T KOG4579|consen  106 NLRFNPLNAEP-RVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLG  159 (177)
T ss_pred             ccccCccccch-HHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccc
Confidence            77777776553 3344466777777777777777776555455555566666665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.16  E-value=3.2e-07  Score=81.48  Aligned_cols=116  Identities=15%  Similarity=0.033  Sum_probs=60.7

Q ss_pred             ccceEEeecccccCCCCchhhHh--hhcCCCCCEEEccCcccccc----ccccccCCCCCcEEEcccCCCcccccc----
Q psy11648        238 EKLQLLEISFSLFNSNEFPYYIL--NKNLNTLEWLAMDNNNIKNI----RNYSLYNLTSLNYINLEYNKISKIHNN----  307 (584)
Q Consensus       238 ~~L~~L~l~~~~~~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~l~~i~~~----  307 (584)
                      ..|+.+.+.+|.+....+...++  ...+.+|+.||+..|.++..    ...++...+.|+.|.+.+|-++.-+..    
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence            35555555555554222211111  03566777777777766622    223455556677777777765522211    


Q ss_pred             cccccccCCccEEEcCCCcccccc------cc-cccCCCCCcEEEccCCcCCC
Q psy11648        308 LFHFNIHKRLKEIRLSNNYLELIE------SD-TFYNLKELNTITLSYNLLKS  353 (584)
Q Consensus       308 ~~~~~~~~~L~~L~l~~~~~~~~~------~~-~l~~~~~L~~L~l~~~~~~~  353 (584)
                      .|...-.|+|..|...+|.+..-.      +. .=..++-|..+.+.+|.+..
T Consensus       265 ~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         265 RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            111122567777777766544311      11 11345667777888888764

>KOG4579|consensus

Probab=98.16  E-value=2.5e-07  Score=73.40  Aligned_cols=122  Identities=20%  Similarity=0.202  Sum_probs=78.9

Q ss_pred             hhhccccccccccccccccc--------ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccc
Q psy11648         24 KLQHLGTTILKGDQLQGIFN--------SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIEN   95 (584)
Q Consensus        24 ~l~~Lr~L~l~~~~l~~l~~--------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~   95 (584)
                      .-+.+..++++.+++-.++.        .+|+..++++|.+++....--... +.++ ++++++|.|..+|.++..... 
T Consensus        25 dakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf-~t~t-~lNl~~neisdvPeE~Aam~a-  101 (177)
T KOG4579|consen   25 DAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKF-PTAT-TLNLANNEISDVPEELAAMPA-  101 (177)
T ss_pred             HHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhcc-chhh-hhhcchhhhhhchHHHhhhHH-
Confidence            33455566777776665443        667777777777776544333332 5677 777777777777777555555 


Q ss_pred             cceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhh
Q psy11648         96 IEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAK  170 (584)
Q Consensus        96 L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  170 (584)
                      |+  .|+++.|.+.                    ..|..+..+.++-.|+..+|.+.+++.+.|.+..+.+..+.
T Consensus       102 Lr--~lNl~~N~l~--------------------~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen  102 LR--SLNLRFNPLN--------------------AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hh--hcccccCccc--------------------cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhc
Confidence            77  7777777665                    23344444677888888888888877766655555555443

>KOG2982|consensus

Probab=98.11  E-value=4.4e-07  Score=81.72  Aligned_cols=62  Identities=24%  Similarity=0.186  Sum_probs=26.1

Q ss_pred             CCCcEEEcccCCCccccc--ccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCC
Q psy11648        289 TSLNYINLEYNKISKIHN--NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK  352 (584)
Q Consensus       289 ~~L~~L~l~~~~l~~i~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  352 (584)
                      +.++.+|+.+|.++.-..  .+...  +|.|++|+++.|++.......-....+|+.+.+.|..+.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~--lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQ--LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhc--CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            345555555555542111  11122  555555555555544322211122344455555544443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.06  E-value=4e-06  Score=53.75  Aligned_cols=40  Identities=33%  Similarity=0.400  Sum_probs=24.6

Q ss_pred             CCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy11648        512 PNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP  552 (584)
Q Consensus       512 ~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp  552 (584)
                      ++|++|++++|+|+++++ .+..+++|+.|++++|+++.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence            356667777777666654 3566777777777777766554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.06  E-value=7.2e-06  Score=68.14  Aligned_cols=102  Identities=24%  Similarity=0.377  Sum_probs=37.6

Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII  517 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  517 (584)
                      +++|+.+.+.. .+..++...|.++ ++++.+.+..+ +..+...+|.++++++.+.+.+ .+.......|..+++|+.+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~-~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNC-TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT--TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCEEEECC-CeeEeChhhcccc-ccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            44555555543 3444444445444 45555555442 4444444455554455555543 2222223344445555555


Q ss_pred             ECCCCCCCCcCcccccCCCCccEEEcCC
Q psy11648        518 DLSFNEISMLTGEQFYFSFKLRILNISH  545 (584)
Q Consensus       518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~  545 (584)
                      ++..+ +..+....|.++ .|+.+.+.+
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            54432 334444444444 444444443

>KOG1644|consensus

Probab=98.03  E-value=7.3e-06  Score=69.93  Aligned_cols=103  Identities=23%  Similarity=0.268  Sum_probs=73.9

Q ss_pred             CCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCc-ccccCCCCccEEE
Q psy11648        464 DSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTG-EQFYFSFKLRILN  542 (584)
Q Consensus       464 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~-~~~~~~~~L~~L~  542 (584)
                      .+...++++.|++..+.  .|..++.|.+|.+.+|.|+.+.|..-.-+++|+.|.+.+|.|..+.. +.+..||+|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            56677888888776543  46778888888888888888777666667888888888887763221 2256788888888


Q ss_pred             cCCCcCCccC----ccccCCCCcceEECCC
Q psy11648        543 ISHNRLRSLP----RDVFSNTIIEKLDISY  568 (584)
Q Consensus       543 L~~n~l~~lp----~~l~~~~~L~~l~l~~  568 (584)
                      +-+|.++.-.    ..+..+|+|+.||.++
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            8888777432    2455668888888764

>KOG1644|consensus

Probab=97.97  E-value=8.5e-06  Score=69.53  Aligned_cols=127  Identities=23%  Similarity=0.245  Sum_probs=92.3

Q ss_pred             ccccccccccccccc-----ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeec
Q psy11648         29 GTTILKGDQLQGIFN-----SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDL  103 (584)
Q Consensus        29 r~L~l~~~~l~~l~~-----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~l  103 (584)
                      |.+++.+.++..+..     .+...+|+++|.+-....  |..+ +.|. +|.+.+|+|+.|.+.+.....+|.  .|.+
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l-~rL~-tLll~nNrIt~I~p~L~~~~p~l~--~L~L   95 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHL-PRLH-TLLLNNNRITRIDPDLDTFLPNLK--TLIL   95 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhccc--CCCc-cccc-eEEecCCcceeeccchhhhccccc--eEEe
Confidence            445777776665443     677888999998877644  7676 7899 999999999999998888888899  9999


Q ss_pred             CCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchh
Q psy11648        104 SHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDR  183 (584)
Q Consensus       104 s~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  183 (584)
                      .+|.|....     .+             ..+..|++|++|.+-+|.+.+.......                     -+
T Consensus        96 tnNsi~~l~-----dl-------------~pLa~~p~L~~Ltll~Npv~~k~~YR~y---------------------vl  136 (233)
T KOG1644|consen   96 TNNSIQELG-----DL-------------DPLASCPKLEYLTLLGNPVEHKKNYRLY---------------------VL  136 (233)
T ss_pred             cCcchhhhh-----hc-------------chhccCCccceeeecCCchhcccCceeE---------------------EE
Confidence            999876422     22             1256678999999999987776432111                     11


Q ss_pred             HhhccCCcEEEcCCCccc
Q psy11648        184 EKLLSNLETLLLRCNKIT  201 (584)
Q Consensus       184 ~~~~~~L~~L~l~~~~~~  201 (584)
                       ..+|+|+.||++.....
T Consensus       137 -~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  137 -YKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             -EecCcceEeehhhhhHH
Confidence             15789999998876544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.86  E-value=3.6e-05  Score=63.91  Aligned_cols=34  Identities=38%  Similarity=0.467  Sum_probs=10.2

Q ss_pred             cCCCCCEEEccCccccccccccccCCCCCcEEEcc
Q psy11648        263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE  297 (584)
Q Consensus       263 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  297 (584)
                      .+++|+.+.+.. .+..+...+|..+++|+.+.+.
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~   43 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFP   43 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEES
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccc
Confidence            333444444432 2333333334444444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=0.00012  Score=71.21  Aligned_cols=137  Identities=15%  Similarity=0.209  Sum_probs=87.9

Q ss_pred             ccccCCCCceEECCCCccccccccccccccCcccEEEccCCC-CCCCChhhHHHhhCCCcEEEccCC-cccccCccccCC
Q psy11648        409 NITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNR-IQEVPVNFLQTFADSLRKLYLDFN-EIKHLDATAFGN  486 (584)
Q Consensus       409 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~  486 (584)
                      .+..+.++..|++++|.++.++.     .+++|+.|.+++|. ++.+|. .   +|++|++|++++| .+..++      
T Consensus        47 r~~~~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~-~---LP~nLe~L~Ls~Cs~L~sLP------  111 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPG-S---IPEGLEKLTVCHCPEISGLP------  111 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCc-h---hhhhhhheEccCcccccccc------
Confidence            33345788999999999888872     25689999998854 666663 2   3478999999998 554332      


Q ss_pred             CcccCeeeccCcccccccccccCCC-CCccEEECCCCC-CCCc-CcccccCCCCccEEEcCCCcCCccCccccCCCCcce
Q psy11648        487 LDVLELLSLEHNNIAVVVKRTFIGM-PNLQIIDLSFNE-ISML-TGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEK  563 (584)
Q Consensus       487 l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~ls~n~-i~~~-~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~  563 (584)
                       .+|+.|++.++.....     ..+ ++|+.|.+.+++ .... .+..+  .++|++|++++|....+|..+-  .+|+.
T Consensus       112 -~sLe~L~L~~n~~~~L-----~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~LP--~SLk~  181 (426)
T PRK15386        112 -ESVRSLEIKGSATDSI-----KNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEKLP--ESLQS  181 (426)
T ss_pred             -cccceEEeCCCCCccc-----ccCcchHhheecccccccccccccccc--CCcccEEEecCCCcccCccccc--ccCcE
Confidence             4578888876554321     222 356777775432 1111 11111  2578888888887666664433  58888


Q ss_pred             EECCCCC
Q psy11648        564 LDISYNQ  570 (584)
Q Consensus       564 l~l~~n~  570 (584)
                      |+++.|.
T Consensus       182 L~ls~n~  188 (426)
T PRK15386        182 ITLHIEQ  188 (426)
T ss_pred             EEecccc
Confidence            8887763

>KOG3665|consensus

Probab=97.68  E-value=4.9e-05  Score=80.50  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=66.9

Q ss_pred             hHhhccCCcEEEcCCCccccc-chhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhh
Q psy11648        183 REKLLSNLETLLLRCNKITDL-NGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILN  261 (584)
Q Consensus       183 ~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~  261 (584)
                      ++..+|.|+.|.+.+..+... ......++++|..||+|++.+...    ..++.+++|+.|.+.+-.+....--..+| 
T Consensus       143 ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrnLe~e~~~~l~~LF-  217 (699)
T KOG3665|consen  143 IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRNLEFESYQDLIDLF-  217 (699)
T ss_pred             HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccHHHHhccCCCCCchhhHHHHh-
Confidence            333577777777777665432 223455777777777777776644    45666777777777766554212223333 


Q ss_pred             hcCCCCCEEEccCccccccc------cccccCCCCCcEEEcccCCCc
Q psy11648        262 KNLNTLEWLAMDNNNIKNIR------NYSLYNLTSLNYINLEYNKIS  302 (584)
Q Consensus       262 ~~~~~L~~L~l~~~~l~~~~------~~~l~~l~~L~~L~l~~~~l~  302 (584)
                       .+++|+.||+|........      -+.-..+|.|+.||.|++.+.
T Consensus       218 -~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  218 -NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             -cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence             6777777777765433211      112233667777777766554

>KOG3665|consensus

Probab=97.60  E-value=3.8e-05  Score=81.32  Aligned_cols=151  Identities=19%  Similarity=0.226  Sum_probs=86.8

Q ss_pred             CCCCceEECCCCccc-cccccccccccCcccEEEccCCCCCCCC-hhhHHHhhCCCcEEEccCCcccccCccccCCCccc
Q psy11648        413 KQTPMNLNLSNNYIT-NLYENDKKQAPIYIKSLDLSNNRIQEVP-VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL  490 (584)
Q Consensus       413 ~~~l~~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L  490 (584)
                      ..+|+.|++++...- ..........+|+|+.|.+++-.+..-. ...+..+ ++|..||+++.+++.+  .+++.+++|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhcc-CccceeecCCCCccCc--HHHhccccH
Confidence            346777888765322 2222223345778888888776554211 1334445 7788888888777665  456677778


Q ss_pred             CeeeccCccccc-ccccccCCCCCccEEECCCCCCCCcC---c---ccccCCCCccEEEcCCCcCCc--cCccccCCCCc
Q psy11648        491 ELLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEISMLT---G---EQFYFSFKLRILNISHNRLRS--LPRDVFSNTII  561 (584)
Q Consensus       491 ~~L~l~~n~~~~-~~~~~~~~~~~L~~L~ls~n~i~~~~---~---~~~~~~~~L~~L~L~~n~l~~--lp~~l~~~~~L  561 (584)
                      +.|.+.+-.+.. ..-..+-++.+|+.||+|..+.....   .   +....+|.|+.||.+++.+..  +..-+..-|+|
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L  277 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL  277 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence            877777755543 22223456778888888765433221   1   122346777777777776662  33233333566


Q ss_pred             ceEEC
Q psy11648        562 EKLDI  566 (584)
Q Consensus       562 ~~l~l  566 (584)
                      +.+.+
T Consensus       278 ~~i~~  282 (699)
T KOG3665|consen  278 QQIAA  282 (699)
T ss_pred             hhhhh
Confidence            65553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.55  E-value=0.00053  Score=66.96  Aligned_cols=92  Identities=12%  Similarity=0.196  Sum_probs=49.3

Q ss_pred             hccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCC-ccccccccccccc
Q psy11648        359 FKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN-YITNLYENDKKQA  437 (584)
Q Consensus       359 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~-~l~~~~~~~~~~~  437 (584)
                      +..+..++.|++++|.++.+ |.   -.++|++|.+++|.--...+..+     ...|+.|++++| .+..+        
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L-----P~nLe~L~Ls~Cs~L~sL--------  110 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI-----PEGLEKLTVCHCPEISGL--------  110 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh-----hhhhhheEccCccccccc--------
Confidence            44567888888888877766 31   23468888887754211111111     135566666665 33322        


Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEcc
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLD  472 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  472 (584)
                      +++|+.|++..+....+     ..+|++|++|.+.
T Consensus       111 P~sLe~L~L~~n~~~~L-----~~LPssLk~L~I~  140 (426)
T PRK15386        111 PESVRSLEIKGSATDSI-----KNVPNGLTSLSIN  140 (426)
T ss_pred             ccccceEEeCCCCCccc-----ccCcchHhheecc
Confidence            24566666655433222     1233556666654

>KOG2123|consensus

Probab=97.19  E-value=2.3e-05  Score=70.22  Aligned_cols=100  Identities=20%  Similarity=0.213  Sum_probs=73.1

Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccc-ccccCCCCCccE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV-KRTFIGMPNLQI  516 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~  516 (584)
                      +.+.++|++.+|.+++|  .+...+ +.|+.|.|+-|+|+.+.+  +..|.+|++|.|..|.|..+. ...+.++|+|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kM-p~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKM-PLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhc-ccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            45677888888888876  456677 888888888888887754  668888889998888877642 245678888888


Q ss_pred             EECCCCCCCCcCcc-----cccCCCCccEEE
Q psy11648        517 IDLSFNEISMLTGE-----QFYFSFKLRILN  542 (584)
Q Consensus       517 L~ls~n~i~~~~~~-----~~~~~~~L~~L~  542 (584)
                      |.|..|.-.+..+.     .+..+|+|++|+
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888875543332     234567777775

>KOG1947|consensus

Probab=96.85  E-value=0.00028  Score=73.54  Aligned_cols=85  Identities=21%  Similarity=0.087  Sum_probs=37.7

Q ss_pred             cCCccEEEcCCCcc-ccc-ccccccCCCCCcEEEccCC-cC-CCc---ChhhhccCcCCCEEeccCCC-CCccCCccCC-
Q psy11648        314 HKRLKEIRLSNNYL-ELI-ESDTFYNLKELNTITLSYN-LL-KSI---KTTSFKNLNNMLNIVLSFNQ-IKYIYPNAFV-  384 (584)
Q Consensus       314 ~~~L~~L~l~~~~~-~~~-~~~~l~~~~~L~~L~l~~~-~~-~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~-  384 (584)
                      ++.|+.+.+.++.. ... .......++.|+.++++++ .. ...   .......+.+|+.++++.+. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45566666555532 211 1223445566666666652 11 110   01122334555555555555 4433222222 


Q ss_pred             CCCCCcEEecCCCC
Q psy11648        385 NLPNLVKLDLQDNK  398 (584)
Q Consensus       385 ~~~~L~~L~l~~~~  398 (584)
                      .|++|+.|.+.+|.
T Consensus       267 ~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  267 RCPNLETLSLSNCS  280 (482)
T ss_pred             hCCCcceEccCCCC
Confidence            25555555555554

>KOG2123|consensus

Probab=96.84  E-value=8.5e-05  Score=66.75  Aligned_cols=102  Identities=19%  Similarity=0.177  Sum_probs=78.8

Q ss_pred             hhhccccccccccccccccc----ccceeeeecCCceeecCCccccccccceeeEEEecCccccccccc-ccccccccce
Q psy11648         24 KLQHLGTTILKGDQLQGIFN----SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSG-LFDKIENIEQ   98 (584)
Q Consensus        24 ~l~~Lr~L~l~~~~l~~l~~----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~-~~~~~~~L~~   98 (584)
                      .+...+.|++.|+.|++|..    +-|++|.||-|+|+...+  +..+ .+|+ +|.|..|.|..+.+- -.++...|+ 
T Consensus        17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rC-trLk-ElYLRkN~I~sldEL~YLknlpsLr-   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRC-TRLK-ELYLRKNCIESLDELEYLKNLPSLR-   91 (388)
T ss_pred             HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHH-HHHH-HHHHHhcccccHHHHHHHhcCchhh-
Confidence            45667888999999999887    999999999999999865  7776 8999 999999999866543 255666799 


Q ss_pred             eeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceee
Q psy11648         99 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLL  145 (584)
Q Consensus        99 ~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~  145 (584)
                       +|.|..|.-.+.........              .+.-+++|+.||
T Consensus        92 -~LWL~ENPCc~~ag~nYR~~--------------VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 -TLWLDENPCCGEAGQNYRRK--------------VLRVLPNLKKLD  123 (388)
T ss_pred             -hHhhccCCcccccchhHHHH--------------HHHHcccchhcc
Confidence             99999998776655433221              345566777766

>KOG2739|consensus

Probab=96.59  E-value=0.0013  Score=59.01  Aligned_cols=103  Identities=24%  Similarity=0.220  Sum_probs=71.3

Q ss_pred             CCCcEEEccCCcccccCccccCCCcccCeeeccCc--ccccccccccCCCCCccEEECCCCCCCCcCc-ccccCCCCccE
Q psy11648        464 DSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN--NIAVVVKRTFIGMPNLQIIDLSFNEISMLTG-EQFYFSFKLRI  540 (584)
Q Consensus       464 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~-~~~~~~~~L~~  540 (584)
                      ..|+.|.+.++.++..  ..|..+++|+.|.++.|  .+.+........+|+|+++++++|++..+.. ..+..+++|..
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            6677777777776644  35778899999999999  5555555556778999999999999874211 12445677889


Q ss_pred             EEcCCCcCCccCc---cccC-CCCcceEECCC
Q psy11648        541 LNISHNRLRSLPR---DVFS-NTIIEKLDISY  568 (584)
Q Consensus       541 L~L~~n~l~~lp~---~l~~-~~~L~~l~l~~  568 (584)
                      |++.+|..+.+..   .++. +++|+.++-.+
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            9999997665322   1222 37777776543

>KOG4308|consensus

Probab=96.59  E-value=2.5e-05  Score=79.05  Aligned_cols=17  Identities=47%  Similarity=0.425  Sum_probs=10.0

Q ss_pred             cCCccceeecccccccc
Q psy11648        137 LLSNLETLLLRCNKITD  153 (584)
Q Consensus       137 ~~~~L~~L~l~~n~i~~  153 (584)
                      ...++++|.+++|.++.
T Consensus       202 ~~~~le~L~L~~~~~t~  218 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTS  218 (478)
T ss_pred             ccccHHHHhhhhcCcCh
Confidence            34566666666665553

>KOG2739|consensus

Probab=96.54  E-value=0.00097  Score=59.88  Aligned_cols=115  Identities=19%  Similarity=0.181  Sum_probs=75.5

Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCC--cccccCccccCCCcccCeeeccCcccccc-cccccCCCCCc
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN--EIKHLDATAFGNLDVLELLSLEHNNIAVV-VKRTFIGMPNL  514 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L  514 (584)
                      ...++.+.+.+..++.+.  .+..+ ++|++|.++.|  .+.+-.......+++|+++++++|.+..+ ....+..+.+|
T Consensus        42 ~~~le~ls~~n~gltt~~--~~P~L-p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT--NFPKL-PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhhccceeecc--cCCCc-chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            356677777777665432  23355 89999999999  44433333445679999999999988752 11235667888


Q ss_pred             cEEECCCCCCCCcCc---ccccCCCCccEEEcCCCcCCccCccc
Q psy11648        515 QIIDLSFNEISMLTG---EQFYFSFKLRILNISHNRLRSLPRDV  555 (584)
Q Consensus       515 ~~L~ls~n~i~~~~~---~~~~~~~~L~~L~L~~n~l~~lp~~l  555 (584)
                      ..|++..|..+....   ..|.-+++|++|+=.+..=...|.+.
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~~  162 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEAD  162 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccccCCccccccc
Confidence            899999887664322   34555788888876665433444433

>KOG1947|consensus

Probab=96.34  E-value=0.00059  Score=71.11  Aligned_cols=220  Identities=21%  Similarity=0.128  Sum_probs=116.3

Q ss_pred             CCCCCcEEEccCCc-CCCc-ChhhhccCcCCCEEeccCC-CCCccC----CccCCCCCCCcEEecCCCC-CCCCChhhhc
Q psy11648        337 NLKELNTITLSYNL-LKSI-KTTSFKNLNNMLNIVLSFN-QIKYIY----PNAFVNLPNLVKLDLQDNK-LKDFNLNVFS  408 (584)
Q Consensus       337 ~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~  408 (584)
                      .++.++.+.+.++. +... .......++.|+.++++++ ......    ......+++|+.++++.+. +++.....+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            46788888887773 3332 2334456788888888763 211111    1233456788888888877 6655554444


Q ss_pred             ccccCCCCceEECCCCc-cccccccccccccCcccEEEccCCCCC-C--CChhhHHHhhCCCcEEEccCCcccccCcccc
Q psy11648        409 NITSKQTPMNLNLSNNY-ITNLYENDKKQAPIYIKSLDLSNNRIQ-E--VPVNFLQTFADSLRKLYLDFNEIKHLDATAF  484 (584)
Q Consensus       409 ~~~~~~~l~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~l~-~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  484 (584)
                      .  .++.++.+.+..|. +++.........++.|++|+++.|... +  +. ..... +++++.|.+....         
T Consensus       266 ~--~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~-~~~~~-c~~l~~l~~~~~~---------  332 (482)
T KOG1947|consen  266 S--RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLE-ALLKN-CPNLRELKLLSLN---------  332 (482)
T ss_pred             h--hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHH-HHHHh-CcchhhhhhhhcC---------
Confidence            3  24566666666555 455554444555666777777665432 1  11 11222 2555554433221         


Q ss_pred             CCCcccCeeeccCcccc---cccccccCCCCCccEEECCCCCCCCcC-cccccCCCCc--------------cEEEcCCC
Q psy11648        485 GNLDVLELLSLEHNNIA---VVVKRTFIGMPNLQIIDLSFNEISMLT-GEQFYFSFKL--------------RILNISHN  546 (584)
Q Consensus       485 ~~l~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~ls~n~i~~~~-~~~~~~~~~L--------------~~L~L~~n  546 (584)
                       .++.++.+.+.++...   .........|+.++.+.+.++...... ...+.+|+.|              +.|+++.|
T Consensus       333 -~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~  411 (482)
T KOG1947|consen  333 -GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDC  411 (482)
T ss_pred             -CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccC
Confidence             1444555554443221   122234567888888888877644333 2344555555              55666665


Q ss_pred             cCCccCccccC----CCCcceEECCCCCC
Q psy11648        547 RLRSLPRDVFS----NTIIEKLDISYNQD  571 (584)
Q Consensus       547 ~l~~lp~~l~~----~~~L~~l~l~~n~l  571 (584)
                      ...... .+..    +..++.+++.+++.
T Consensus       412 ~~~t~~-~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  412 RLVTDK-GLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cccccc-chHHHhhhhhccccCCccCccc
Confidence            444332 2222    34455566655543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.94  E-value=0.0029  Score=33.50  Aligned_cols=17  Identities=35%  Similarity=0.358  Sum_probs=8.3

Q ss_pred             cceEECCCCCCCCCCCC
Q psy11648        561 IEKLDISYNQDKIRPGR  577 (584)
Q Consensus       561 L~~l~l~~n~l~~~p~~  577 (584)
                      |++|++++|+++.+|+.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44455555544444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.92  E-value=0.005  Score=30.15  Aligned_cols=15  Identities=60%  Similarity=0.884  Sum_probs=5.5

Q ss_pred             CccEEEcCCCcCCcc
Q psy11648        537 KLRILNISHNRLRSL  551 (584)
Q Consensus       537 ~L~~L~L~~n~l~~l  551 (584)
                      +|+.|++++|+|+++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444444

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.77  E-value=0.0053  Score=30.07  Aligned_cols=17  Identities=29%  Similarity=0.352  Sum_probs=11.9

Q ss_pred             CCcceEECCCCCCCCCC
Q psy11648        559 TIIEKLDISYNQDKIRP  575 (584)
Q Consensus       559 ~~L~~l~l~~n~l~~~p  575 (584)
                      ++|++|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            57999999999999887

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.61  E-value=0.0062  Score=32.25  Aligned_cols=18  Identities=39%  Similarity=0.650  Sum_probs=11.7

Q ss_pred             CccEEEcCCCcCCccCcc
Q psy11648        537 KLRILNISHNRLRSLPRD  554 (584)
Q Consensus       537 ~L~~L~L~~n~l~~lp~~  554 (584)
                      +|++|++++|+++.+|..
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            356667777766666655

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.36  E-value=0.012  Score=32.74  Aligned_cols=22  Identities=27%  Similarity=0.237  Sum_probs=14.4

Q ss_pred             CCcceEECCCCCCCCCCCCCCC
Q psy11648        559 TIIEKLDISYNQDKIRPGRESN  580 (584)
Q Consensus       559 ~~L~~l~l~~n~l~~~p~~~~~  580 (584)
                      ++|+.|++++|+++.+|...|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4566666666666666666664

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.36  E-value=0.012  Score=32.74  Aligned_cols=22  Identities=27%  Similarity=0.237  Sum_probs=14.4

Q ss_pred             CCcceEECCCCCCCCCCCCCCC
Q psy11648        559 TIIEKLDISYNQDKIRPGRESN  580 (584)
Q Consensus       559 ~~L~~l~l~~n~l~~~p~~~~~  580 (584)
                      ++|+.|++++|+++.+|...|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4566666666666666666664

>KOG4308|consensus

Probab=95.18  E-value=0.00017  Score=73.17  Aligned_cols=89  Identities=19%  Similarity=0.136  Sum_probs=42.2

Q ss_pred             ceeeeecCCceeecCCcccccc---ccceeeEEEecCcccc-----cccccccccccccceeeeecCCCceeeechhhhc
Q psy11648         46 LRELEITGKDLKFIDPSAFDNI---DACYDLTLKITNTQIE-----ELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY  117 (584)
Q Consensus        46 L~~L~ls~n~~~~~~~~~~~~~---~~~L~~~L~ls~n~i~-----~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~  117 (584)
                      +.++++..|.+.+.....+...   .++|+ .|++++|.+.     .+-+.+-.....++  +|++..|.++......+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~-~L~l~~n~l~~~g~~~l~~~l~~~~~~l~--~L~l~~c~l~~~g~~~l~  165 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLG-QLDLSGNNLGDEGARLLCEGLRLPQCLLQ--TLELVSCSLTSEGAAPLA  165 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHh-HhhcccCCCccHhHHHHHhhcccchHHHH--HHHhhcccccccchHHHH
Confidence            5555555555555433322221   24555 5666666555     11222222212255  555555555544443322


Q ss_pred             cchhcccccCceeccchhhcCCccceeeccccccc
Q psy11648        118 SNVTKLQHLGTTILKDREKLLSNLETLLLRCNKIT  152 (584)
Q Consensus       118 ~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~  152 (584)
                      .               .+....+++.++++.|.+.
T Consensus       166 ~---------------~L~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  166 A---------------VLEKNEHLTELDLSLNGLI  185 (478)
T ss_pred             H---------------HHhcccchhHHHHHhcccc
Confidence            2               2434566666666666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.66  E-value=0.025  Score=31.37  Aligned_cols=22  Identities=45%  Similarity=0.679  Sum_probs=15.6

Q ss_pred             CCccEEEcCCCcCCccCccccC
Q psy11648        536 FKLRILNISHNRLRSLPRDVFS  557 (584)
Q Consensus       536 ~~L~~L~L~~n~l~~lp~~l~~  557 (584)
                      ++|++|+|++|+|+.+|.+.+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            5677777777777777766553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.66  E-value=0.025  Score=31.37  Aligned_cols=22  Identities=45%  Similarity=0.679  Sum_probs=15.6

Q ss_pred             CCccEEEcCCCcCCccCccccC
Q psy11648        536 FKLRILNISHNRLRSLPRDVFS  557 (584)
Q Consensus       536 ~~L~~L~L~~n~l~~lp~~l~~  557 (584)
                      ++|++|+|++|+|+.+|.+.+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            5677777777777777766553

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.04  E-value=0.15  Score=27.89  Aligned_cols=18  Identities=28%  Similarity=0.353  Sum_probs=13.1

Q ss_pred             CCcceEECCCCCCCCCCC
Q psy11648        559 TIIEKLDISYNQDKIRPG  576 (584)
Q Consensus       559 ~~L~~l~l~~n~l~~~p~  576 (584)
                      ++|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            367777777777777776

>KOG3864|consensus

Probab=90.77  E-value=0.03  Score=48.49  Aligned_cols=12  Identities=25%  Similarity=0.556  Sum_probs=4.8

Q ss_pred             cCCCCCccEEEC
Q psy11648        508 FIGMPNLQIIDL  519 (584)
Q Consensus       508 ~~~~~~L~~L~l  519 (584)
                      +..+++|+.|.+
T Consensus       172 L~~lknLr~L~l  183 (221)
T KOG3864|consen  172 LLKLKNLRRLHL  183 (221)
T ss_pred             HHHhhhhHHHHh
Confidence            333444444433

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.83  E-value=0.28  Score=26.90  Aligned_cols=18  Identities=50%  Similarity=0.702  Sum_probs=15.5

Q ss_pred             CCccEEEcCCCcCCccCc
Q psy11648        536 FKLRILNISHNRLRSLPR  553 (584)
Q Consensus       536 ~~L~~L~L~~n~l~~lp~  553 (584)
                      ++|++|++++|+|+.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            578899999999999885

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.90  E-value=0.34  Score=26.10  Aligned_cols=20  Identities=45%  Similarity=0.635  Sum_probs=11.1

Q ss_pred             ccceeeeecCCCceeeechhhh
Q psy11648         95 NIEQMTLDLSHNKLSVLNMATL  116 (584)
Q Consensus        95 ~L~~~~L~ls~~~l~~~~~~~~  116 (584)
                      +|+  +|+|++|.|++.....+
T Consensus         3 ~L~--~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    3 NLE--TLDLSNNQITDEGASAL   22 (24)
T ss_dssp             T-S--EEE-TSSBEHHHHHHHH
T ss_pred             CCC--EEEccCCcCCHHHHHHh
Confidence            366  77777777766554443

...

>KOG0473|consensus

Probab=82.94  E-value=0.15  Score=45.31  Aligned_cols=80  Identities=11%  Similarity=0.079  Sum_probs=46.2

Q ss_pred             cceeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhccc----ccCceeccchhhcCCcccee
Q psy11648         69 ACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ----HLGTTILKDREKLLSNLETL  144 (584)
Q Consensus        69 ~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~~l~~~l~~~~~L~~L  144 (584)
                      ...+ .||++.|++..+...+..... +.  .+|++.|.+... +..+.+...+..    .|+.+..|.+++..++++++
T Consensus        42 kr~t-vld~~s~r~vn~~~n~s~~t~-~~--rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   42 KRVT-VLDLSSNRLVNLGKNFSILTR-LV--RLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             ceee-eehhhhhHHHhhccchHHHHH-HH--HHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            4455 566666655555544444444 55  556665554322 223333333222    45556778888888999999


Q ss_pred             ecccccccc
Q psy11648        145 LLRCNKITD  153 (584)
Q Consensus       145 ~l~~n~i~~  153 (584)
                      ++.++.+..
T Consensus       117 e~k~~~~~~  125 (326)
T KOG0473|consen  117 EQKKTEFFR  125 (326)
T ss_pred             hhccCcchH
Confidence            998886433

>KOG3864|consensus

Probab=82.74  E-value=0.27  Score=42.83  Aligned_cols=35  Identities=20%  Similarity=0.146  Sum_probs=17.8

Q ss_pred             CCCCCEEEccCcc-ccccccccccCCCCCcEEEccc
Q psy11648        264 LNTLEWLAMDNNN-IKNIRNYSLYNLTSLNYINLEY  298 (584)
Q Consensus       264 ~~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~  298 (584)
                      .++|+.|++++|. |++-....+..+++|+.|.+.+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            3455666666552 4433333455555555555543

>KOG0473|consensus

Probab=82.06  E-value=0.035  Score=49.08  Aligned_cols=85  Identities=16%  Similarity=0.125  Sum_probs=46.1

Q ss_pred             CCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEE
Q psy11648        486 NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLD  565 (584)
Q Consensus       486 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~  565 (584)
                      .....+.||++.|.+.... .-|+-++.|..|+++.|.+.-.+ +.+.....++++++++|..+..|......++++.++
T Consensus        40 ~~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~~~-~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKFLP-KDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             ccceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhhCh-hhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            3344555555555443322 23444455556666666554433 334444555666666666666666666666666666


Q ss_pred             CCCCCCC
Q psy11648        566 ISYNQDK  572 (584)
Q Consensus       566 l~~n~l~  572 (584)
                      .-+|+++
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            6666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	584
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-15
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-14
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		5e-13
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		4e-12
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		5e-12
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		8e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		5e-12
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-07
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-11
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		3e-10
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-04
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		3e-10
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		1e-05
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		5e-10
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		2e-08
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		5e-10
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		6e-10
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		2e-08
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		7e-10
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		7e-10
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-05
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-09
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-09
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-05
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-09
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		7e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		7e-09
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		4e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		7e-09
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		7e-09
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-08
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-05
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		8e-08
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		1e-07
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		1e-07
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		5e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		2e-07
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-06
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-05
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		3e-06
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		9e-06
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		1e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-05
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		2e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-05
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		7e-05
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		9e-05
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		1e-04
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-04
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		6e-04
4eco_A	636	Crystal Structure Of A Hypothetical Protein (Bacegg		8e-04

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 10/231 (4%)
Query: 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK 352
           Y+NL+ N I  I  + F    H  L+ ++LS N +  IE   F  L  LNT+ L  N L 
Sbjct: 39  YLNLQENSIQVIRTDTFKHLRH--LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVFSNIT 411
           ++ T +F+ L+ +  + L  N I+ I   AF  +P+L +LDL +  +L+  +   F  + 
Sbjct: 97  TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL- 155
Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
                +NL   N  + NL +     A + ++ L+LS NR+  +     Q    SLRKL+L
Sbjct: 156 -----VNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLT-SLRKLWL 209
Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
              ++  ++  AF +L  LE L+L HNN+  +    F  +  L+ + L+ N
Sbjct: 210 MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 10/231 (4%)
Query: 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK 352
           Y+NL+ N I  I  + F    H  L+ ++LS N +  IE   F  L  LNT+ L  N L 
Sbjct: 39  YLNLQENSIQVIRTDTFKHLRH--LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVFSNIT 411
           ++ T +F+ L+ +  + L  N I+ I   AF  +P+L +LDL +  +L+  +   F  + 
Sbjct: 97  TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL- 155
Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
                +NL   N  + NL +     A + ++ L+LS NR+  +     Q    SLRKL+L
Sbjct: 156 -----VNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLT-SLRKLWL 209
Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
              ++  ++  AF +L  LE L+L HNN+  +    F  +  L+ + L+ N
Sbjct: 210 MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 171/396 (43%), Gaps = 74/396 (18%)
Query: 206 NLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS-----FSLFNSNEFPYYIL 260
           N FR L +L  L L +N  Q ++L +  F+    L++L ++      ++ + N F     
Sbjct: 73  NTFRGLSSLIILKLDYN--QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF----- 125
Query: 261 NKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKI-HNNLFHFNIHKRLK 318
            K L +LE L + +NNIK I+  S + N+   + ++L +NK+  I   +L +F   K   
Sbjct: 126 -KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ-GKHFT 183
Query: 319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI 378
            +RLS+             L+++N   L +    +     FKN                 
Sbjct: 184 LLRLSS-----------ITLQDMNEYWLGWEKCGN----PFKN----------------- 211
Query: 379 YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY-------ITNLYE 431
                    ++  LDL  N  K+     F +  +     +L LSN+Y        TN  +
Sbjct: 212 --------TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263
Query: 432 ND----KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL 487
            D    K      +K+ DLS ++I  +  +    F D L +L L  NEI  +D  AF  L
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGL 322
Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNR 547
             L  L+L  N +  +  R F  +  L+++DLS+N I  L  + F     L+ L +  N+
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 548 LRSLPRDVFSN-TIIEKLDISYNQDKIRPGRESNPR 582
           L+S+P  +F   T ++K+ +  N     P   S PR
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTN-----PWDCSCPR 413

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 129/252 (51%), Gaps = 27/252 (10%)
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392
           D+F  ++ LN   L    ++ I T +F   + +  + + FN I+Y+ P+ F N+P L  L
Sbjct: 72  DSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128
Query: 393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
            L+ N L      +F N T K T   L++SNN +  + E+D  QA   +++L LS+NR+ 
Sbjct: 129 VLERNDLSSLPRGIFHN-TPKLT--TLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLT 184
Query: 453 EVPVNFLQTFADS------LRKLYLDFNEIKHLDAT------AFGNLDV-LELLSLEHNN 499
            V ++ + +   +      L  L +    ++ LDA+        G ++V L +L L+HNN
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPI-AVEELDASHNSINVVRGPVNVELTILKLQHNN 243
Query: 500 IAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNT 559
           +        +  P L  +DLS+NE+  +    F    +L  L IS+NRL +L  +++   
Sbjct: 244 LTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQP 299
Query: 560 I--IEKLDISYN 569
           I  ++ LD+S+N
Sbjct: 300 IPTLKVLDLSHN 311

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 24/235 (10%)
Query: 351 LKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNI 410
           ++ I T +F   + +  + + FN I+Y+ P+ F N+P L  L L+ N L      +F N 
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN- 139
Query: 411 TSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS----- 465
           T K T   L++SNN +  + E+D  QA   +++L LS+NR+  V ++ + +   +     
Sbjct: 140 TPKLT--TLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196
Query: 466 -LRKLYLDFNEIKHLDAT------AFGNLDV-LELLSLEHNNIAVVVKRTFIGMPNLQII 517
            L  L +    ++ LDA+        G ++V L +L L+HNN+        +  P L  +
Sbjct: 197 LLSTLAIPI-AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEV 253
Query: 518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI--IEKLDISYNQ 570
           DLS+NE+  +    F    +L  L IS+NRL +L  +++   I  ++ LD+S+N 
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH 306

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
           ++ L+L++ +I+E+   +   +A +++KLY+ FN I++L    F N+ +L +L LE N++
Sbjct: 71  VELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
           + + +  F   P L  + +S N +  +  + F  +  L+ L +S NRL
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 45/235 (19%)
Query: 275 NNIKNIRNYSLYNLTSL--------NYINLEYNKISKIHNNLFHFNIHKRLKEIRL---S 323
           NN KN  + S   LT++          ++L+ NK+S + +  FH     RL ++RL   +
Sbjct: 15  NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH-----RLTKLRLLYLN 69
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
           +N L+ + +  F  LK L T+ ++ N L+++    F  L N+  + L  NQ+K + P  F
Sbjct: 70  DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
            +L  L  L L  N+L+     VF  +TS                            +K 
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTS----------------------------LKE 161
Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498
           L L NN+++ VP        + L+ L LD N++K +   AF +L+ L++L L+ N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTE-LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P   K LDL +N++  +P          LR LYL+ N+++ L A  F  L  LE L +  
Sbjct: 36  PADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
           N +  +    F  + NL  + L  N++  L    F    KL  L++ +N L+SLP+ VF 
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 558 N-TIIEKLDISYNQDKIRP 575
             T +++L +  NQ K  P
Sbjct: 155 KLTSLKELRLYNNQLKRVP 173

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 12/248 (4%)
Query: 278 KNIRNYSLYNLTSLNYINLEYNKISKIHNNLF-HFNIHKRLKEIRLSNNYLELIESDTFY 336
           KN+R       T+   +NL  N+I  I  N F H    + L+ ++LS N++  IE   F 
Sbjct: 53  KNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL---RHLEILQLSRNHIRTIEIGAFN 109
Query: 337 NLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD 396
            L  LNT+ L  N L +I   +F  L+ +  + L  N I+ I   AF  +P+L +LDL +
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Query: 397 -NKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
             +L   +   F  ++      NL   N  + NL E       I +  LDLS N +  + 
Sbjct: 170 LKRLSYISEGAFEGLS------NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ 515
               Q     L+KL++  ++I+ ++  AF NL  L  ++L HNN+ ++    F  + +L+
Sbjct: 224 PGSFQGLMH-LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282
Query: 516 IIDLSFNE 523
            I L  N 
Sbjct: 283 RIHLHHNP 290

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 179/401 (44%), Gaps = 68/401 (16%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI-------SFSLF 250
           N + D+    F +L +L+ LSL +N +Q   L+   F     L+ L +       S SL 
Sbjct: 258 NNLHDVGNGSFSYLPSLRYLSLEYNNIQ--RLSPRSFYGLSNLRYLSLKRAFTKQSVSLA 315
Query: 251 ---NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE--YNKISKIH 305
              N ++F +    + L  LE+L MD+NNI + ++ +   L SL Y++L   +  +  + 
Sbjct: 316 SHPNIDDFSF----QWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLT 371
Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL-KSIKTTSFKNLNN 364
           N  F    H  L  + L+ N++  I + TF  L +L  + L  N + + +    ++ L N
Sbjct: 372 NETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRN 431
Query: 365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN----LN 420
           +  I LS+N+   +  ++F  +P+L +L L+   LK+ +++      S   P+     L+
Sbjct: 432 IFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS-----PSPFRPLRNLTILD 486
Query: 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV--------PVNFLQTFADSLRKLYLD 472
           LSNN I N+ E D  +    ++ LD  +N +  +        PVNFL+            
Sbjct: 487 LSNNNIANINE-DLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLK------------ 533
Query: 473 FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF 532
                         L  L +L+LE N +  +    F  +   ++  ++    ++   E F
Sbjct: 534 -------------GLSHLHILNLESNGLDEIPVGVFKNL--FELKSINLGLNNLNKLEPF 578
Query: 533 YF--SFKLRILNISHNRLRSLPRDVFSNTI--IEKLDISYN 569
            F     LR LN+  N + S+ +DVF      +  LD+ +N
Sbjct: 579 IFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFN 619

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 438 PIYIKSLDLSNNRIQEVP-VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
           P  I  L+L++N+++ +P  NF  T    L  L   FN I  L+      L +L++L+L+
Sbjct: 24  PSNITVLNLTHNQLRRLPPTNF--TRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
           HN ++ +  +TF+   NL  +DL  N I  +    F     L  L++SHN L S
Sbjct: 82  HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 12/211 (5%)
Query: 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK 352
           Y+NL  N I  I  + F    H  L+ ++L  N +  IE   F  L  LNT+ L  N L 
Sbjct: 79  YLNLMENNIQMIQADTFRHLHH--LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVFSNIT 411
            I + +F+ L+ +  + L  N I+ I   AF  +P+L++LDL +  KL+  +   F  + 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL- 195
Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV-PVNFLQTFADSLRKLY 470
                 NL   N  + N+ +       + ++ L++S N   E+ P +F      SL+KL+
Sbjct: 196 -----FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL--SSLKKLW 248
Query: 471 LDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
           +  +++  ++  AF  L  L  L+L HNN++
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 107/240 (44%), Gaps = 30/240 (12%)
Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
           + + L  N +++I++DTF +L  L  + L  N ++ I+  +F  L ++  + L  N +  
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA 437
           I   AF  L  L +L L++N ++      F+ + S    M L+L              + 
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL---MRLDLGELKKLEYISEGAFEG 194
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
              +K L+L    I+++P N   T    L +L +  N    +   +F  L  L+ L + +
Sbjct: 195 LFNLKYLNLGMCNIKDMP-NL--TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
           + ++++ +  F G+ +L  ++L                      N++HN L SLP D+F+
Sbjct: 252 SQVSLIERNAFDGLASL--VEL----------------------NLAHNNLSSLPHDLFT 287

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 119/276 (43%), Gaps = 19/276 (6%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
           NKIT++    F++L NL  L L  NK  I +++   F    KL+ L +S +     E P 
Sbjct: 62  NKITEIKDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQL--KELP- 116
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN--KISKIHNNLFHFNIHK 315
               K   TL+ L +  N I  +R      L  +  + L  N  K S I N  F     K
Sbjct: 117 ---EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG--MK 171
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
           +L  IR+++  +  I      +L EL+   L  N +  +   S K LNN+  + LSFN I
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKK 435
             +   +  N P+L +L L +NKL    + V   +   +    + L NN I+ +  ND  
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKL----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 436 QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
                 K    S   +   PV + +    + R +Y+
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 110/265 (41%), Gaps = 40/265 (15%)
Query: 270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLEL 329
           L + NN I  I++    NL +L+ + L  NKISKI    F   +  +L+ + LS N L+ 
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLKE 114
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY--IYPNAFVNLP 387
           +       L+EL    +  N +  ++ + F  LN M+ + L  N +K   I   AF  + 
Sbjct: 115 LPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS 447
            L  + + D           +NIT+   P  L                  P  +  L L 
Sbjct: 172 KLSYIRIAD-----------TNITT--IPQGL------------------PPSLTELHLD 200
Query: 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRT 507
            N+I +V    L+   ++L KL L FN I  +D  +  N   L  L L +NN  V V   
Sbjct: 201 GNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHL-NNNKLVKVPGG 258
Query: 508 FIGMPNLQIIDLSFNEISMLTGEQF 532
                 +Q++ L  N IS +    F
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDF 283

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 139/319 (43%), Gaps = 40/319 (12%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE--YNKISKIHNNLFHFNIHKRLKEIR 321
           L  LE L M++N+I  I++     L +L Y++L   +  +  + N  F    H  L  + 
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP 380
           L+ N +  IESD F  L  L  + L  N + + +    ++ L N+  I LS+N+   +  
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447
Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
           N+F  +P+L +L L+   LK    NV S+ +  Q   NL +                   
Sbjct: 448 NSFALVPSLQRLMLRRVALK----NVDSSPSPFQPLRNLTI------------------- 484
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA--------FGNLDVLEL 492
              LDLSNN I  +  + L+   + L  L L  N +  L   A           L  L +
Sbjct: 485 ---LDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
Query: 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
           L+LE N    +    F  +  L+IIDL  N ++ L    F     L+ LN+  N + S+ 
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 553 RDVFSNTI--IEKLDISYN 569
           + VF      + +LD+ +N
Sbjct: 601 KKVFGPAFRNLTELDMRFN 619

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 31/168 (18%)
Query: 438 PIYIKSLDLSNNRIQEVPV-NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
           P  I  L+L++N+++ +P  NF  T    L  L + FN I  L+      L +L++L+L+
Sbjct: 24  PTNITVLNLTHNQLRRLPAANF--TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN---------- 546
           HN ++ +  +TF    NL  + L  N I  +    F     L  L++SHN          
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
Query: 547 -----------------RLRSLPRDVFSNTIIEKLDISYNQDK-IRPG 576
                             L+S   D+F+N+ ++KL++S NQ K   PG
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 119/276 (43%), Gaps = 19/276 (6%)
Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
           NKIT++    F++L NL  L L  NK  I +++   F    KL+ L +S +     E P 
Sbjct: 62  NKITEIKDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQL--KELP- 116
Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN--KISKIHNNLFHFNIHK 315
               K   TL+ L +  N I  +R      L  +  + L  N  K S I N  F     K
Sbjct: 117 ---EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG--MK 171
Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
           +L  IR+++  +  I      +L EL+   L  N +  +   S K LNN+  + LSFN I
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKK 435
             +   +  N P+L +L L +NKL    + V   +   +    + L NN I+ +  ND  
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKL----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 436 QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
                 K    S   +   PV + +    + R +Y+
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 110/265 (41%), Gaps = 40/265 (15%)
Query: 270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLEL 329
           L + NN I  I++    NL +L+ + L  NKISKI    F   +  +L+ + LS N L+ 
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLKE 114
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY--IYPNAFVNLP 387
           +       L+EL    +  N +  ++ + F  LN M+ + L  N +K   I   AF  + 
Sbjct: 115 LPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS 447
            L  + + D           +NIT+   P  L                  P  +  L L 
Sbjct: 172 KLSYIRIAD-----------TNITT--IPQGL------------------PPSLTELHLD 200
Query: 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRT 507
            N+I +V    L+   ++L KL L FN I  +D  +  N   L  L L +NN  V V   
Sbjct: 201 GNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHL-NNNKLVKVPGG 258
Query: 508 FIGMPNLQIIDLSFNEISMLTGEQF 532
                 +Q++ L  N IS +    F
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDF 283

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 139/319 (43%), Gaps = 40/319 (12%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE--YNKISKIHNNLFHFNIHKRLKEIR 321
           L  LE L M++N+I  I++     L +L Y++L   +  +  + N  F    H  L  + 
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 397
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP 380
           L+ N +  IESD F  L  L  + L  N + + +    ++ L N+  I LS+N+   +  
Sbjct: 398 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 457
Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
           N+F  +P+L +L L+   LK    NV S+ +  Q   NL +                   
Sbjct: 458 NSFALVPSLQRLMLRRVALK----NVDSSPSPFQPLRNLTI------------------- 494
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA--------FGNLDVLEL 492
              LDLSNN I  +  + L+   + L  L L  N +  L   A           L  L +
Sbjct: 495 ---LDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 550
Query: 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
           L+LE N    +    F  +  L+IIDL  N ++ L    F     L+ LN+  N + S+ 
Sbjct: 551 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 610
Query: 553 RDVFSNTI--IEKLDISYN 569
           + VF      + +LD+ +N
Sbjct: 611 KKVFGPAFRNLTELDMRFN 629

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 31/168 (18%)
Query: 438 PIYIKSLDLSNNRIQEVPV-NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
           P  I  L+L++N+++ +P  NF  T    L  L + FN I  L+      L +L++L+L+
Sbjct: 34  PTNITVLNLTHNQLRRLPAANF--TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 91
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN---------- 546
           HN ++ +  +TF    NL  + L  N I  +    F     L  L++SHN          
Sbjct: 92  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 151
Query: 547 -----------------RLRSLPRDVFSNTIIEKLDISYNQDK-IRPG 576
                             L+S   D+F+N+ ++KL++S NQ K   PG
Sbjct: 152 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 199

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 139/319 (43%), Gaps = 40/319 (12%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE--YNKISKIHNNLFHFNIHKRLKEIR 321
           L  LE L M++N+I  I++     L +L Y++L   +  +  + N  F    H  L  + 
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 392
Query: 322 LSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP 380
           L+ N +  IESD F  L  L  + L  N + + +    ++ L N+  I LS+N+   +  
Sbjct: 393 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 452
Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
           N+F  +P+L +L L+   LK    NV S+ +  Q   NL +                   
Sbjct: 453 NSFALVPSLQRLMLRRVALK----NVDSSPSPFQPLRNLTI------------------- 489
Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA--------FGNLDVLEL 492
              LDLSNN I  +  + L+   + L  L L  N +  L   A           L  L +
Sbjct: 490 ---LDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 545
Query: 493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
           L+LE N    +    F  +  L+IIDL  N ++ L    F     L+ LN+  N + S+ 
Sbjct: 546 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 605
Query: 553 RDVFSNTI--IEKLDISYN 569
           + VF      + +LD+ +N
Sbjct: 606 KKVFGPAFRNLTELDMRFN 624

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 31/168 (18%)
Query: 438 PIYIKSLDLSNNRIQEVPV-NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
           P  I  L+L++N+++ +P  NF  T    L  L + FN I  L+      L +L++L+L+
Sbjct: 29  PTNITVLNLTHNQLRRLPAANF--TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 86
Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN---------- 546
           HN ++ +  +TF    NL  + L  N I  +    F     L  L++SHN          
Sbjct: 87  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 146
Query: 547 -----------------RLRSLPRDVFSNTIIEKLDISYNQDK-IRPG 576
                             L+S   D+F+N+ ++KL++S NQ K   PG
Sbjct: 147 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 194

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 140/316 (44%), Gaps = 44/316 (13%)
Query: 274 NNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESD 333
           +N I   + +SL     +      ++ I     N F       ++ + LS+ ++  + S 
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284
Query: 334 TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD 393
            F  LK+L  + L+YN +  I   +F  L+N+  + LS+N +  +Y + F  LP +  +D
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLD---LSNNR 450
           LQ N +       F  +   QT   L+L +N +T ++         +I S+    LS N+
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQT---LDLRDNALTTIH---------FIPSIPDIFLSGNK 392
Query: 451 IQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE-LLSLEHNNIAVVVKRTFI 509
           +  +P            K+ L  N I HL      NLD+L  LL + H  I ++ +  F 
Sbjct: 393 LVTLP------------KINLTANLI-HLSENRLENLDILYFLLRVPHLQILILNQNRFS 439
Query: 510 GM---------PNLQIIDLSFNEISM-----LTGEQFYFSFKLRILNISHNRLRSLPRDV 555
                      P+L+ + L  N + +     L  + F     L++L ++HN L SLP  V
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499
Query: 556 FSN-TIIEKLDISYNQ 570
           FS+ T +  L ++ N+
Sbjct: 500 FSHLTALRGLSLNSNR 515

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
           E L + +  +  + + +   LT L ++NL+YN++  +   +F  +    L  + L+NN L
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGLANNQL 95
Query: 328 ELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP 387
             +    F +L +L+ + L  N LKS+ +  F  L  +  + L+ NQ++ I   AF  L 
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQT 415
           NL  L L  N+L+      F  +   QT
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQT 183

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536
           K LD+   G     E L L+   +A +   TF G+  L  ++L +N++  L+   F    
Sbjct: 24  KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 537 KLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDKIRP 575
           +L  L +++N+L SLP  VF + T ++KL +  NQ K  P
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
           E L + +  +  + + +   LT L ++NL+YN++  +   +F  +    L  + L+NN L
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGLANNQL 95
Query: 328 ELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP 387
             +    F +L +L+ + L  N LKS+ +  F  L  +  + L+ NQ++ I   AF  L 
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQT 415
           NL  L L  N+L+      F  +   QT
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQT 183

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536
           K LD+   G     E L L+   +A +   TF G+  L  ++L +N++  L+   F    
Sbjct: 24  KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 537 KLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDKIRP 575
           +L  L +++N+L SLP  VF + T ++KL +  NQ K  P
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 43/298 (14%)
Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
           T    ++L  N+I  ++ + F    H  L+E+ L+ N +  +E   F NL  L T+ L  
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPH--LEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
           N LK I    F  L+N+  + +S N+I  +    F +L NL  L++ DN L   +   FS
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 409 NITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRK 468
            + S +    L L    +T++      +A  ++  L +   R++ + +N ++ +  S ++
Sbjct: 150 GLNSLE---QLTLEKCNLTSI----PTEALSHLHGLIVL--RLRHLNINAIRDY--SFKR 198
Query: 469 LY----LDFNEIKHLDATAFGNLDVLEL--LSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
           LY    L+ +   +LD      L  L L  LS+ H N+  V       +  L+ ++LS+N
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Query: 523 EISMLTGEQFY--------------------FSFK----LRILNISHNRLRSLPRDVF 556
            IS + G   +                    ++F+    LR+LN+S N+L +L   VF
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P   + LDL  NRI+ +  +   +F   L +L L+ N +  ++  AF NL  L  L L  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPH-LEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
           N + ++    F G+ NL  +D+S N+I +L    F   + L+ L +  N L  +    FS
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 558 N 558
Sbjct: 150 G 150

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
           DN  ++++   + + L  L+ ++L+   + ++   LF       L+ + L +N L+ +  
Sbjct: 88  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALPD 145
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392
           DTF +L  L  + L  N + S+   +F+ L+++  ++L  N++ +++P+AF +L  L+ L
Sbjct: 146 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 205
Query: 393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
            L  N L        + + + Q  + LN       N +  D +  P++   L        
Sbjct: 206 YLFANNLSALPTEALAPLRALQY-LRLN------DNPWVCDCRARPLW-AWLQKFRGSSS 257
Query: 453 EVPVNFLQTFAD 464
           EVP +  Q  A 
Sbjct: 258 EVPCSLPQRLAG 269

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 10/190 (5%)
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN-KLKDF 402
           I L  N +  +   SF+   N+  + L  N +  I   AF  L  L +LDL DN +L+  
Sbjct: 36  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
           +   F  +    T   L+L    +  L     +     ++ L L +N +Q +P +   TF
Sbjct: 96  DPATFHGLGRLHT---LHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDD---TF 148
Query: 463 AD--SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLS 520
            D  +L  L+L  N I  +   AF  L  L+ L L  N +A V    F  +  L  + L 
Sbjct: 149 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 208
Query: 521 FNEISMLTGE 530
            N +S L  E
Sbjct: 209 ANNLSALPTE 218

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
           DN  ++++   + + L  L+ ++L+   + ++   LF       L+ + L +N L+ +  
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALPD 146
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392
           DTF +L  L  + L  N + S+   +F+ L+++  ++L  N++ +++P+AF +L  L+ L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
            L  N L        + + + Q  + LN       N +  D +  P++   L        
Sbjct: 207 YLFANNLSALPTEALAPLRALQY-LRLN------DNPWVCDCRARPLW-AWLQKFRGSSS 258
Query: 453 EVPVNFLQTFAD 464
           EVP +  Q  A 
Sbjct: 259 EVPCSLPQRLAG 270

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 10/190 (5%)
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN-KLKDF 402
           I L  N +  +   SF+   N+  + L  N +  I   AF  L  L +LDL DN +L+  
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
           +   F  +    T   L+L    +  L     +     ++ L L +N +Q +P +   TF
Sbjct: 97  DPATFHGLGRLHT---LHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDD---TF 149
Query: 463 AD--SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLS 520
            D  +L  L+L  N I  +   AF  L  L+ L L  N +A V    F  +  L  + L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 521 FNEISMLTGE 530
            N +S L  E
Sbjct: 210 ANNLSALPTE 219

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
           L  + +LA+  N + +I   +L  LT+L Y+ L  N++  + N +F  +    LKE+ L 
Sbjct: 62  LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELVLV 117
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
            N L+ +    F  L  L  + L++N L+S+    F  L N+  + LS+NQ++ +    F
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ 414
             L  L  L L  N+LK     VF  +TS Q
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 446 LSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK 505
           L+ N++Q +P        + L++L L  N+++ L    F  L  L  L+L HN +  + K
Sbjct: 92  LTGNQLQSLPNGVFDKLTN-LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150
Query: 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
             F  + NL  +DLS+N++  L    F    +L+ L +  N+L+S+P  VF
Sbjct: 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 9/162 (5%)
Query: 274 NNNIKNIRNYSLYNLTS-----LNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLE 328
           +NNI + R   L  + +     +  I LE N I  I    F  + +K+L+ I LSNN + 
Sbjct: 12  SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQIS 69
Query: 329 LIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPN 388
            +  D F  L+ LN++ L  N +  +  + F+ L ++  ++L+ N+I  +  +AF +L N
Sbjct: 70  ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
           L  L L DNKL+      FS + + QT M+L   N +I + +
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQT-MHL-AQNPFICDCH 169

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 9/162 (5%)
Query: 274 NNNIKNIRNYSLYNLTS-----LNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLE 328
           +NNI + R   L  + +     +  I LE N I  I    F  + +K+L+ I LSNN + 
Sbjct: 12  SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQIS 69
Query: 329 LIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPN 388
            +  D F  L+ LN++ L  N +  +  + F+ L ++  ++L+ N+I  +  +AF +L N
Sbjct: 70  ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHN 129
Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
           L  L L DNKL+      FS + + QT M+L   N +I + +
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQT-MHL-AQNPFICDCH 169

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
           L  + +LA+  N + +I   +L  LT+L Y+ L  N++  + N +F  +    LKE+ L 
Sbjct: 62  LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELVLV 117
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
            N L+ +    F  L  L  + L +N L+S+    F  L N+  + L  NQ++ +    F
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITS 412
             L  L +L L DN+LK     VF  +TS
Sbjct: 178 DKLTQLKQLSLNDNQLKSVPDGVFDRLTS 206

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 446 LSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK 505
           L+ N++Q +P        + L++L L  N+++ L    F  L  L  L L HN +  + K
Sbjct: 92  LTGNQLQSLPNGVFDKLTN-LKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPK 150
Query: 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF 556
             F  + NL  +DL  N++  L    F    +L+ L+++ N+L+S+P  VF
Sbjct: 151 GVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 25/247 (10%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK--------SIKTTSFKNLN 363
            I      + L +N L+ +    F  L +L  ++LS N L            TTS K L+
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84
Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
                 LSFN +  +  N F+ L  L  LD Q + LK   ++ FS   S +  + L++S+
Sbjct: 85  ------LSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISH 135
Query: 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL-YLDFNE--IKHLD 480
            + T +  N        ++ L ++ N  QE   NFL      LR L +LD ++  ++ L 
Sbjct: 136 TH-TRVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQLS 191
Query: 481 ATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF-YFSFKLR 539
            TAF +L  L++L++ HNN   +    +  + +LQ++D S N I     ++  +F   L 
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251
Query: 540 ILNISHN 546
            LN++ N
Sbjct: 252 FLNLTQN 258

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 10/192 (5%)
Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
           DN  ++ +   +   L  L+ ++L+   + ++   LF       L+ + L +N L+ +  
Sbjct: 88  DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNNLQALPD 145
Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392
           +TF +L  L  + L  N + S+   +F+ L+++  ++L  N +  ++P+AF +L  L+ L
Sbjct: 146 NTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTL 205
Query: 393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
            L  N L      V   + S Q  + LN       N +  D +  P++   L        
Sbjct: 206 YLFANNLSMLPAEVLVPLRSLQY-LRLN------DNPWVCDCRARPLW-AWLQKFRGSSS 257
Query: 453 EVPVNFLQTFAD 464
           EVP N  Q  A 
Sbjct: 258 EVPCNLPQRLAG 269

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN-KLKDF 402
           I L  N +  +   SF++  N+  + L  N +  I   AF  L  L +LDL DN +L+  
Sbjct: 36  IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
           +   F  +    T   L+L    +  L     +     ++ L L +N +Q +P N   TF
Sbjct: 96  DPTTFRGLGHLHT---LHLDRCGLQELGPGLFRGL-AALQYLYLQDNNLQALPDN---TF 148
Query: 463 AD--SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLS 520
            D  +L  L+L  N I  +   AF  L  L+ L L  N++A V    F  +  L  + L 
Sbjct: 149 RDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLF 208
Query: 521 FNEISMLTGE 530
            N +SML  E
Sbjct: 209 ANNLSMLPAE 218

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 26/180 (14%)
Query: 297 EYNKISKIHNNLFHF----NIHKRLKEIR---LSNNYLELIESDTFYNLKELNTITLSYN 349
           +Y    +++NN F       I K+L ++R    SNN +  IE   F     +N I L+ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 350 LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
            L++++   FK L ++  ++L  N+I  +  ++F+ L ++  L L DN++       F  
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Query: 410 ITSKQT------PMNLNLSNNYITNLYE----------NDKKQAPIYIKSLDLSNNRIQE 453
           + S  T      P N N    Y+  L E          N + Q P ++K + + +  IQ+
Sbjct: 152 LHSLSTLNLLANPFNCNC---YLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQD 208

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 17/195 (8%)
Query: 356 TTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQT 415
           TTS K L+      LSFN +  +  N F+ L  L  LD Q + LK   ++ FS   S + 
Sbjct: 372 TTSLKYLD------LSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRN 422
Query: 416 PMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL-YLDFN 474
            + L++S+ + T +  N        ++ L ++ N  QE   NFL      LR L +LD +
Sbjct: 423 LIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLS 478
Query: 475 E--IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF 532
           +  ++ L  TAF +L  L++L++ HNN   +    +  + +LQ++D S N I     ++ 
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 533 -YFSFKLRILNISHN 546
            +F   L  LN++ N
Sbjct: 539 QHFPSSLAFLNLTQN 553

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 129/282 (45%), Gaps = 20/282 (7%)
Query: 270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLEL 329
           L + NN+I  +R      L  L  + L  NKISKIH     F+  ++L+++ +S N+L  
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA--FSPLRKLQKLYISKNHLVE 116
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK--YIYPNAFVNLP 387
           I  +   +L EL    +  N ++ +    F  L NM  I +  N ++     P AF  L 
Sbjct: 117 IPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172
Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL-YENDKKQAPIYIKSLDL 446
            L  L + + KL     ++       +T   L+L +N I  +  E+  + + +Y   L L
Sbjct: 173 KLNYLRISEAKLTGIPKDL------PETLNELHLDHNKIQAIELEDLLRYSKLY--RLGL 224
Query: 447 SNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKR 506
            +N+I+ +  N   +F  +LR+L+LD N++  + A    +L +L+++ L  NNI  V   
Sbjct: 225 GHNQIRMI-ENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVN 282
Query: 507 TFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
            F  +    +    +N IS+      Y+  +        +RL
Sbjct: 283 DFCPV-GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 37/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
           L N+N+        NL  L  L + NN I +I    L NLT+LN + L  N IS I    
Sbjct: 91  LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 145
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
              +    L+++  S+N  ++ +     NL  L  + +S N +  I       L N+ ++
Sbjct: 146 -ALSGLTSLQQLSFSSN--QVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 200
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
           + + NQI  I P     L NL +L L  N+LKD   L   +N+T      +L+L+NN I+
Sbjct: 201 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 252
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
           NL       AP+     +  L L  N+I  + P+  L    +      L+ NE +  D +
Sbjct: 253 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 299
Query: 483 AFGNLDVLELLSLEHNNIA 501
              NL  L  L+L  NNI+
Sbjct: 300 PISNLKNLTYLTLYFNNIS 318

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 37/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
           L N+N+        NL  L  L + NN I +I    L NLT+LN + L  N IS I    
Sbjct: 91  LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 145
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
              +    L+++  S+N  ++ +     NL  L  + +S N +  I       L N+ ++
Sbjct: 146 -ALSGLTSLQQLSFSSN--QVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 200
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
           + + NQI  I P     L NL +L L  N+LKD   L   +N+T      +L+L+NN I+
Sbjct: 201 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 252
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
           NL       AP+     +  L L  N+I  + P+  L    +      L+ NE +  D +
Sbjct: 253 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 299
Query: 483 AFGNLDVLELLSLEHNNIA 501
              NL  L  L+L  NNI+
Sbjct: 300 PISNLKNLTYLTLYFNNIS 318

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 37/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
           L N+N+        NL  L  L + NN I +I    L NLT+LN + L  N IS I    
Sbjct: 91  LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 145
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
              +    L+++  S+N  ++ +     NL  L  + +S N +  I       L N+ ++
Sbjct: 146 -ALSGLTSLQQLNFSSN--QVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 200
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
           + + NQI  I P     L NL +L L  N+LKD   L   +N+T      +L+L+NN I+
Sbjct: 201 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 252
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
           NL       AP+     +  L L  N+I  + P+  L    +      L+ NE +  D +
Sbjct: 253 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 299
Query: 483 AFGNLDVLELLSLEHNNIA 501
              NL  L  L+L  NNI+
Sbjct: 300 PISNLKNLTYLTLYFNNIS 318

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
           L N+N+        NL  L  L + NN I +I    L NLT+LN + L  N IS I    
Sbjct: 95  LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 149
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
              +    L+++   N   +L       NL  L  + +S N +  I       L N+ ++
Sbjct: 150 -ALSGLTSLQQLSFGNQVTDL---KPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 203
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
           + + NQI  I P     L NL +L L  N+LKD   L   +N+T      +L+L+NN I+
Sbjct: 204 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 255
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
           NL       AP+     +  L L  N+I  + P+  L    +      L+ NE +  D +
Sbjct: 256 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 302
Query: 483 AFGNLDVLELLSLEHNNIA 501
              NL  L  L+L  NNI+
Sbjct: 303 PISNLKNLTYLTLYFNNIS 321

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
           L N+N+        NL  L  L + NN I +I    L NLT+LN + L  N IS I    
Sbjct: 96  LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 150
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
              +    L+++   N   +L       NL  L  + +S N +  I       L N+ ++
Sbjct: 151 -ALSGLTSLQQLSFGNQVTDL---KPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 204
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
           + + NQI  I P     L NL +L L  N+LKD   L   +N+T      +L+L+NN I+
Sbjct: 205 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 256
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
           NL       AP+     +  L L  N+I  + P+  L    +      L+ NE +  D +
Sbjct: 257 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 303
Query: 483 AFGNLDVLELLSLEHNNIA 501
              NL  L  L+L  NNI+
Sbjct: 304 PISNLKNLTYLTLYFNNIS 322

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
           LSFN +  +  N F+ L  L  LD Q + LK   ++ FS   S +  + L++S+ + T +
Sbjct: 404 LSFNGVITMSSN-FLGLEQLEHLDFQHSNLK--QMSEFSVFLSLRNLIYLDISHTH-TRV 459
Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL-YLDFNE--IKHLDATAFGN 486
             N        ++ L ++ N  QE   NFL      LR L +LD ++  ++ L  TAF +
Sbjct: 460 AFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF-YFSFKLRILNISH 545
           L  L++L++ HNN   +    +  + +LQ++D S N I     ++  +F   L  LN++ 
Sbjct: 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
Query: 546 N 546
           N
Sbjct: 577 N 577

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
           L N+N+        NL  L  L + NN I +I    L NLT+LN + L  N IS I    
Sbjct: 91  LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 145
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
              +    L+++   N   +L       NL  L  + +S N +  I       L N+ ++
Sbjct: 146 -ALSGLTSLQQLNFGNQVTDL---KPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 199
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
           + + NQI  I P     L NL +L L  N+LKD   L   +N+T      +L+L+NN I+
Sbjct: 200 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 251
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
           NL       AP+     +  L L  N+I  + P+  L    +      L+ NE +  D +
Sbjct: 252 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 298
Query: 483 AFGNLDVLELLSLEHNNIA 501
              NL  L  L+L  NNI+
Sbjct: 299 PISNLKNLTYLTLYFNNIS 317

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
            I + + E+ L  N   L+  +   N K L  I LS N + ++   SF N+  +L ++LS
Sbjct: 28  GIPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLK-----DFN-LNVFSNITSKQTPMNLNLSNNY 425
           +N+++ I P  F  L +L  L L  N +       FN L+  S++     P+  + +  +
Sbjct: 87  YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146
Query: 426 ITNLYENDKKQAPI 439
           +++  +++ K+  I
Sbjct: 147 LSDWVKSEYKEPGI 160

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
           L N+N+        NL  L  L + NN I +I    L NLT+LN + L  N IS I    
Sbjct: 91  LMNNNQIADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--- 145
Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
              +    L+++   N   +L       NL  L  + +S N +  I       L N+ ++
Sbjct: 146 -ALSGLTSLQQLNFGNQVTDL---KPLANLTTLERLDISSNKVSDISV--LAKLTNLESL 199
Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYIT 427
           + + NQI  I P     L NL +L L  N+LKD   L   +N+T      +L+L+NN I+
Sbjct: 200 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLT------DLDLANNQIS 251
Query: 428 NLYENDKKQAPIY----IKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDAT 482
           NL       AP+     +  L L  N+I  + P+  L    +      L+ NE +  D +
Sbjct: 252 NL-------APLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQLEDIS 298
Query: 483 AFGNLDVLELLSLEHNNIA 501
              NL  L  L+L  NNI+
Sbjct: 299 PISNLKNLTYLTLYFNNIS 317

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
           L +L  L +  N ++++ N     LTSL Y+NL  N++  + N +  F+   +LKE+ L+
Sbjct: 51  LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV--FDKLTQLKELALN 108
Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
            N L+ +    F  L +L  + L  N LKS+    F  L ++  I L  N      P 
Sbjct: 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK 352
           Y++LE N +  + N +F  +    L ++ L  N L+ + +  F  L  L  + LS N L+
Sbjct: 32  YLDLETNSLKSLPNGVF--DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITS 412
           S+    F  L  +  + L+ NQ++ +    F  L  L  L L  N+LK     VF  +TS
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 413 KQ 414
            Q
Sbjct: 150 LQ 151

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 432 NDKKQAPIYIKSLDLSNN-----RIQEVP---------------VNFLQTFA----DSLR 467
           N  +  P Y   LDLS+N     R +  P               +NF+ + A     +LR
Sbjct: 32  NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91
Query: 468 KLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISML 527
            L L  N +  LD   F +L  LE+L L +N+I VV +  F  M  LQ + LS N+IS  
Sbjct: 92  YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151
Query: 528 TGEQFYFS---FKLRILNISHNRLRSLP 552
             E         KL +L++S N+L+ LP
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLP 179

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 137/333 (41%), Gaps = 32/333 (9%)
Query: 275 NNIKNIRNYSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLELIESD 333
           N+I  +   S   L  L ++ +E       I NN F       L  ++L  N    +E+ 
Sbjct: 40  NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--LSSLIILKLDYNQFLQLETG 97
Query: 334 TFYNLKELNTITLS-YNLLKSIKTTSF-KNLNNMLNIVLSFNQIKYIYPNAF-VNLPNLV 390
            F  L  L  +TL+  NL  ++ + +F K L ++  +VL  N IK I P +F +N+    
Sbjct: 98  AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157
Query: 391 KLDLQDNKLKDFNLNVFSNITSKQ------TPMNLNLSNNYITNLYENDKKQAPIYIKSL 444
            LDL  NK+K        N   K       + + L   N Y     +         I +L
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217
Query: 445 DLSNNRIQE-VPVNFLQTFADS-LRKLYLD--FNEIKHLDATAFGNLDVLELLSLEHNNI 500
           DLS N  +E +   F    A + ++ L L   +N       T F + D      LE + +
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277
Query: 501 A----------VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
                       ++K  F    +L+ + L+ NEI+ +    F+    L+ L +  N+L+S
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKS 337
Query: 551 LPRDVFSN-TIIEKLDISYNQDKIRPGRESNPR 582
           +P  +F   T ++K+ +  N     P   S PR
Sbjct: 338 VPDGIFDRLTSLQKIWLHTN-----PWDCSCPR 365

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 142/300 (47%), Gaps = 15/300 (5%)
Query: 278 KNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYN 337
           K ++N ++ +L    + +++   IS     +F       ++ I L  +Y   I S+TF+ 
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPA---VFEGLCEMSVESINLQKHYFFNISSNTFHC 276
Query: 338 LKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
              L  + L+   L  + +     L+ +  +VLS N+ + +   +  N P+L  L ++ N
Sbjct: 277 FSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Query: 398 -KLKDFNLNVFSNITSKQTPMNLNLSNNYI-TNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
            K  +       N+ + +    L+LS++ I T+   N + +   +++SL+LS N    + 
Sbjct: 336 TKRLELGTGCLENLENLR---ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDA-TAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNL 514
               +     L  L L F  +K  DA + F NL +L++L+L H+ + +  ++ F G+P L
Sbjct: 393 TEAFKE-CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451
Query: 515 QIIDLSFNEIS---MLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
           Q ++L  N      +          +L IL +S   L S+ +  F++  ++  +D+S+N+
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 151/356 (42%), Gaps = 47/356 (13%)
Query: 211 LYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWL 270
           +  L+ L LSFN+    EL  ++ ++   L  L++S + F+    P    N   NTL+ L
Sbjct: 339 MRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-NTLQEL 396
Query: 271 AMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK-IHNNLFHFNIHKRLKEIRLSNNYLEL 329
            + NN        +L N + L  ++L +N +S  I ++L   +   +L++++L  N LE 
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS---KLRDLKLWLNMLEG 453
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
                   +K L T+ L +N L     +   N  N+  I LS N++    P     L NL
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 390 VKLDLQDNKLK----------------DFNLNVF-SNITSKQTPMNLNLSNNYITN---L 429
             L L +N                   D N N+F   I +     +  ++ N+I     +
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 573
Query: 430 Y-END--KKQAPIYIKSLDLSNNRIQEV-------PVNFLQ---------TFADSLRKLY 470
           Y +ND  KK+       L+    R +++       P N            TF ++   ++
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 471 LD--FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
           LD  +N +        G++  L +L+L HN+I+  +      +  L I+DLS N++
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 151/356 (42%), Gaps = 47/356 (13%)
Query: 211 LYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWL 270
           +  L+ L LSFN+    EL  ++ ++   L  L++S + F+    P    N   NTL+ L
Sbjct: 342 MRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-NTLQEL 399
Query: 271 AMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK-IHNNLFHFNIHKRLKEIRLSNNYLEL 329
            + NN        +L N + L  ++L +N +S  I ++L   +   +L++++L  N LE 
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS---KLRDLKLWLNMLEG 456
Query: 330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
                   +K L T+ L +N L     +   N  N+  I LS N++    P     L NL
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 390 VKLDLQDNKLK----------------DFNLNVF-SNITSKQTPMNLNLSNNYITN---L 429
             L L +N                   D N N+F   I +     +  ++ N+I     +
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 430 Y-END--KKQAPIYIKSLDLSNNRIQEV-------PVNFLQ---------TFADSLRKLY 470
           Y +ND  KK+       L+    R +++       P N            TF ++   ++
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 471 LD--FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
           LD  +N +        G++  L +L+L HN+I+  +      +  L I+DLS N++
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 25/215 (11%)
Query: 225 QIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI--KNIRN 282
           Q +EL +  F  F  L+L  +    F SN+        +L +LE+L +  N +  K   +
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 283 YSLYNLTSLNYINLEYNKISKIHNNLF------HFNI-HKRLKEIR-------------- 321
            S +  TSL Y++L +N +  + +N        H +  H  LK++               
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 322 -LSNNYLELIESDTFYNLKELNTITLSYNLLKS-IKTTSFKNLNNMLNIVLSFNQIKYIY 379
            +S+ +  +  +  F  L  L  + ++ N  +       F  L N+  + LS  Q++ + 
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 380 PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ 414
           P AF +L +L  L++  N+LK     +F  +TS Q
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521

>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329) From Bacteroides Eggerthii Dsm 20697 At 2.70 A Resolution Length = 636

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 439 IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHL----DATAFGNLDVL---- 490
           I + SL+L+ N+I E+P NF   F + +  L    N++K++    DA +      +    
Sbjct: 353 IKLASLNLAYNQITEIPANFC-GFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSY 411
Query: 491 -ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549
            E+ S++  N   +    F G+ N+  I+LS N+IS    E F     L  +N+  N L 
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGI-NVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLT 470
Query: 550 SLPRDV-------FSNT-IIEKLDISYNQ 570
            +P++        F NT ++  +D+ +N+
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	584
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-60
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-53
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-53
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-46
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-42
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-53
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-44
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-41
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-40
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-39
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-40
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-36
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-39
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-39
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-38
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-37
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-36
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-38
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-38
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-33
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-32
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-30
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-30
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-37
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-33
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-33
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-31
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-29
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-32
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-28
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-26
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-32
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-30
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-30
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-23
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-18
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	4e-07
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	7e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	7e-04

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  213 bits (544), Expect = 1e-61
 Identities = 100/514 (19%), Positives = 196/514 (38%), Gaps = 27/514 (5%)

Query: 70  CYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG-- 127
             + T    N  + E+P  L +  E      L+ S N L  +   T  S +  L  L   
Sbjct: 12  EVNKTYNCENLGLNEIPGTLPNSTE-----CLEFSFNVLPTIQNTTF-SRLINLTFLDLT 65

Query: 128 ----TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDR 183
                 I +D  +    L+TL+L  N +  +         K++                 
Sbjct: 66  RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP-KALKHLFFIQTGISSIDFIP 124

Query: 184 EKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLL 243
                 LE+L L  N I+ +          L+ L    N +    L+       ++   L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH--YLSKEDMSSLQQATNL 182

Query: 244 EISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK 303
            ++ +  +         +  +          N +   +      + SL     E      
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 304 IHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
           I   +F       ++ I L  +Y   I S+TF+    L  + L+   L  +  +    L+
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLS 301

Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLK-DFNLNVFSNITSKQTPMNLNLS 422
            +  +VLS N+ + +   +  N P+L  L ++ N  + +       N+ + +    L+LS
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE---LDLS 358

Query: 423 NNYITNLYENDKK-QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA 481
           ++ I      + + +   +++SL+LS N    +     +     L  L L F  +K  DA
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDA 417

Query: 482 -TAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ---FYFSFK 537
            + F NL +L++L+L H+ + +  ++ F G+P LQ ++L  N       ++        +
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 538 LRILNISHNRLRSLPRDVFSNTI-IEKLDISYNQ 570
           L IL +S   L S+ +  F++   +  +D+S+N+
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  209 bits (534), Expect = 4e-60
 Identities = 98/583 (16%), Positives = 194/583 (33%), Gaps = 75/583 (12%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
            L+ S N L  +   T  S +  L  L    L   Q+  I         +L  L +T   
Sbjct: 37  CLEFSFNVLPTIQNTTF-SRLINLTFL---DLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 56  LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
           L F+  +A         L  L    T I  +        + +E  +L L  N +S + + 
Sbjct: 93  LIFMAETALSG---PKALKHLFFIQTGISSIDFIPLHNQKTLE--SLYLGSNHISSIKLP 147

Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
             +                       L+ L  + N I  L+      LQ++         
Sbjct: 148 KGFP-------------------TEKLKVLDFQNNAIHYLSKEDMSSLQQA--------- 179

Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
                            +L L  N I  +    F      Q L+    +  ++       
Sbjct: 180 --------------TNLSLNLNGNDIAGIEPGAFDSA-VFQSLNFGGTQNLLVIFKGLKN 224

Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
              + L L               +     ++ +E + +  +   NI + + +  + L  +
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 295 NLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN-LLKS 353
           +L    +S++ + L        LK++ LS N  E +   +  N   L  +++  N     
Sbjct: 284 DLTATHLSELPSGLVGL---STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 354 IKTTSFKNLNNMLNIVLSFNQIKYI--YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNIT 411
           + T   +NL N+  + LS + I+          NL +L  L+L  N+        F    
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
             +    L+L+   +         Q    +K L+LS++ +             +L+ L L
Sbjct: 401 QLEL---LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNL 456

Query: 472 DFNEIKHLD---ATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLT 528
             N     +     +   L  LE+L L   +++ + +  F  +  +  +DLS N ++  +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 529 GEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
            E       +  LN++ N +  +   +    +    +++  N 
Sbjct: 517 IEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  175 bits (447), Expect = 5e-48
 Identities = 89/487 (18%), Positives = 171/487 (35%), Gaps = 68/487 (13%)

Query: 93  IENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKIT 152
           IE     T +  +  L+ +                         L ++ E L    N + 
Sbjct: 9   IEKEVNKTYNCENLGLNEIP----------------------GTLPNSTECLEFSFNVLP 46

Query: 153 DLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLY 212
            +    F                           L NL  L L   +I  ++ + F+  +
Sbjct: 47  TIQNTTFSR-------------------------LINLTFLDLTRCQIYWIHEDTFQSQH 81

Query: 213 NLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAM 272
            L  L L+ N L    +        + L+ L    +  +S    +  L  N  TLE L +
Sbjct: 82  RLDTLVLTANPLI--FMAETALSGPKALKHLFFIQTGISS--IDFIPL-HNQKTLESLYL 136

Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
            +N+I +I+    +    L  ++ + N I  +               + L+ N +  IE 
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196

Query: 333 DTFYNLKELNTITLSYN--LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP--N 388
             F +     ++       LL   K      + ++          + I P  F  L   +
Sbjct: 197 GAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSN 448
           +  ++LQ +   + + N F   +  Q    L+L+  +++ L           +K L LS 
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQE---LDLTATHLSEL--PSGLVGLSTLKKLVLSA 310

Query: 449 NRIQEVPVNFLQTFADSLRKLYLDFNEIK-HLDATAFGNLDVLELLSLEHNNIAVV--VK 505
           N+ + +       F  SL  L +  N  +  L      NL+ L  L L H++I       
Sbjct: 311 NKFENLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF--SNTIIEK 563
                + +LQ ++LS+NE   L  E F    +L +L+++  RL+         +  +++ 
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 564 LDISYNQ 570
           L++S++ 
Sbjct: 430 LNLSHSL 436

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  151 bits (383), Expect = 2e-39
 Identities = 88/503 (17%), Positives = 185/503 (36%), Gaps = 84/503 (16%)

Query: 1   MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFID 60
           ++L+L+ N ++ +      S V +  + G T       +G+ NS ++ L           
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW---------- 231

Query: 61  PSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
                             +   E++   +F+ +  +   +++L  +    ++  T +   
Sbjct: 232 -------------LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC-- 276

Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV 180
                             S L+ L L    +++L   L                      
Sbjct: 277 -----------------FSGLQELDLTATHLSELPSGLVG-------------------- 299

Query: 181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL 240
                 LS L+ L+L  NK  +L      +  +L  LS+  N    +EL +   +  E L
Sbjct: 300 ------LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK-RLELGTGCLENLENL 352

Query: 241 QLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK 300
           + L++S     +++     L +NL+ L+ L +  N   +++  +      L  ++L + +
Sbjct: 353 RELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI---KTT 357
           +         F     LK + LS++ L++     F  L  L  + L  N        KT 
Sbjct: 412 LKVKDAQSP-FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 358 SFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM 417
           S + L  +  +VLSF  +  I  +AF +L  +  +DL  N+L   ++   S++       
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY--- 527

Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK 477
            LNL++N+I+ +  +         ++++L  N +     N        L     +  +++
Sbjct: 528 -LNLASNHISIILPSLLPILS-QQRTINLRQNPLDCTCSN-----IYFLEWYKENMQKLE 580

Query: 478 HLDATAFGNLDVLELLSLEHNNI 500
             + T   N  +L  + L    +
Sbjct: 581 DTEDTLCENPPLLRGVRLSDVTL 603

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  214 bits (547), Expect = 1e-60
 Identities = 110/515 (21%), Positives = 204/515 (39%), Gaps = 49/515 (9%)

Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHL-------GTTILKDREKLLSNLETLLLRCNKIT 152
            L LS N +  +  ++    + +LQ L         TI K+  + L NL  L L  +KI 
Sbjct: 28  RLLLSFNYIRTVTASSF-PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86

Query: 153 DLNGNLFRHLQK-SIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN-GNLFRH 210
            L+ + F+ L     ++      ++        + L  L  L L  N+I  L     F  
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146

Query: 211 LYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI----------- 259
           L +L+ +  S N++ ++  +       + L    ++ +   S     +            
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206

Query: 260 ----LNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK 315
               ++ N  T++     +N I   + +SL     +      ++ I     N F      
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
            ++ + LS+ ++  + S  F  LK+L  + L+YN +  I   +F  L+N+  + LS+N +
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDK- 434
             +Y + F  LP +  +DLQ N +       F  +   QT   L+L +N +T ++     
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT---LDLRDNALTTIHFIPSI 383

Query: 435 -------------KQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA 481
                         +  +    + LS NR++ + + +       L+ L L+ N       
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 482 TA-FGNLDVLELLSLEHNNIAVVVK-----RTFIGMPNLQIIDLSFNEISMLTGEQFYFS 535
                    LE L L  N + +  +       F G+ +LQ++ L+ N ++ L    F   
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503

Query: 536 FKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
             LR L+++ NRL  L  +      +E LDIS NQ
Sbjct: 504 TALRGLSLNSNRLTVLSHNDLPAN-LEILDISRNQ 537

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  178 bits (453), Expect = 7e-48
 Identities = 91/442 (20%), Positives = 176/442 (39%), Gaps = 57/442 (12%)

Query: 136 KLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLL 195
           ++L+  E LLL  N I  +  + F  L++  +    +         +  + L NL  L L
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 196 RCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEF 255
             +KI  L+ + F+ L++L EL L F  L    L    F                     
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF--------------------- 119

Query: 256 PYYILNKNLNTLEWLAMDNNNIKNIR-NYSLYNLTSLNYINLEYNKISKIHNNLFHFNIH 314
                 +NL  L  L +  N I+++  + S   L SL  I+   N+I  +  +       
Sbjct: 120 ------RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173

Query: 315 KRLKEIRLSNNYLELIESDTFYNLKE------LNTITLSYNLLKSIKTTSFKNLNNMLNI 368
           K L    L+ N L    S  +           L  + +S N      T +F N  +    
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITN 428
                        + +   +++      + +KD + N F+ +       +L+LS+ ++ +
Sbjct: 234 ------------FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV-RHLDLSHGFVFS 280

Query: 429 LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLD 488
           L     +     +K L+L+ N+I ++         D+L+ L L +N +  L ++ F  L 
Sbjct: 281 LNSRVFETLK-DLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
            +  + L+ N+IA++  +TF  +  LQ +DL  N ++ +          +  + +S N+L
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP-----SIPDIFLSGNKL 393

Query: 549 RSLPRDVFSNTIIEKLDISYNQ 570
            +LP+   +  +   + +S N+
Sbjct: 394 VTLPKINLTANL---IHLSENR 412

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  168 bits (426), Expect = 2e-44
 Identities = 90/507 (17%), Positives = 184/507 (36%), Gaps = 67/507 (13%)

Query: 2   TLDLSHNKLSVLNM-ATLYSNVTKLQHLG------TTILKGDQLQGIFNSKLRELEITGK 54
            L L    LS   +    + N+  L  L        ++        +  + L+ ++ +  
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSN 158

Query: 55  DLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDK----IENIEQMTLDLSHNKLSV 110
            +  +     + +         +    +    S  + K      N+    LD+S N  +V
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218

Query: 111 LNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAK 170
                  + ++K Q            L  ++       + I D + N F  L +S     
Sbjct: 219 DITGNFSNAISKSQAF-------SLILAHHIMGAGFGFHNIKDPDQNTFAGLARS----- 266

Query: 171 KNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELN 230
                             ++  L L    +  LN  +F  L +L+ L+L++NK+   ++ 
Sbjct: 267 ------------------SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN--KIA 306

Query: 231 SNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTS 290
              F   + LQ+L +S+   N     Y      L  + ++ +  N+I  I++ +   L  
Sbjct: 307 DEAFYGLDNLQVLNLSY---NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 291 LNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNL 350
           L  ++L  N ++ IH           + +I LS N L  +           N I LS N 
Sbjct: 364 LQTLDLRDNALTTIHF-------IPSIPDIFLSGNKLVTLPKINL----TANLIHLSENR 412

Query: 351 LKSIKTTSF-KNLNNMLNIVLSFNQIKYIYPNA-FVNLPNLVKLDLQDNKLKDFNLNVFS 408
           L+++    F   + ++  ++L+ N+      +      P+L +L L +N L+        
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

Query: 409 NITSKQTP--MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
               +       L L++NY+ +L           ++ L L++NR+  +  N       +L
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHND---LPANL 528

Query: 467 RKLYLDFNEIKHLDATAFGNLDVLELL 493
             L +  N++   +   F +L VL++ 
Sbjct: 529 EILDISRNQLLAPNPDVFVSLSVLDIT 555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  110 bits (276), Expect = 2e-25
 Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 28/261 (10%)

Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY-IYPNAFVNLPNLVKLD 393
              L     + LS+N ++++  +SF  L  +  + L        I   AF NLPNL  LD
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY-IKSLDLSNNRIQ 452
           L  +K+   + + F  +        L L    +++    D     +  +  LDLS N+I+
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFE---LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 453 EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDV--LELLSLEHNNIAVVVKRTFIG 510
            + ++      +SL+ +    N+I  +       L    L   SL  N++   V   +  
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 511 MPN------LQIIDLSFNEISM------------LTGEQFYFSFKLRILNISHNRLRSLP 552
             N      L+I+D+S N  ++                    +  +       + ++   
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 553 RDVFSN---TIIEKLDISYNQ 570
           ++ F+    + +  LD+S+  
Sbjct: 257 QNTFAGLARSSVRHLDLSHGF 277

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  108 bits (271), Expect = 9e-25
 Identities = 76/425 (17%), Positives = 147/425 (34%), Gaps = 117/425 (27%)

Query: 1   MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFID 60
           M      + +   +  T                      G+  S +R L+++   +  ++
Sbjct: 243 MGAGFGFHNIKDPDQNT--------------------FAGLARSSVRHLDLSHGFVFSLN 282

Query: 61  PSAFDNIDACYDL-TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSN 119
              F+      DL  L +   +I ++    F  ++N++   L+LS+N L  L  +  Y  
Sbjct: 283 SRVFET---LKDLKVLNLAYNKINKIADEAFYGLDNLQ--VLNLSYNLLGELYSSNFYG- 336

Query: 120 VTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ 179
                             L  +  + L+ N I  +    F+                   
Sbjct: 337 ------------------LPKVAYIDLQKNHIAIIQDQTFKF------------------ 360

Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEK 239
                  L  L+TL LR N +T ++      + ++ ++ LS NKL  +            
Sbjct: 361 -------LEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLP----------- 397

Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRN-YSLYNLTSLNYINLEY 298
                                 K   T   + +  N ++N+   Y L  +  L  + L  
Sbjct: 398 ----------------------KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 299 NKISKIHNNLFHFNIHKRLKEIRLSNNYLEL-----IESDTFYNLKELNTITLSYNLLKS 353
           N+ S    +    + +  L+++ L  N L+L     +  D F  L  L  + L++N L S
Sbjct: 436 NRFSSCSGDQT-PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 354 IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSK 413
           +    F +L  +  + L+ N++  +  N      NL  LD+  N+L   N +VF +++  
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVL 552

Query: 414 QTPMN 418
               N
Sbjct: 553 DITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.7 bits (233), Expect = 4e-20
 Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 21/227 (9%)

Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLK-DFNL 404
             +  L  +     + LN    ++LSFN I+ +  ++F  L  L  L+L         + 
Sbjct: 11  YRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66

Query: 405 NVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD 464
             F N+ + +    L+L ++ I  L+ +  +    ++  L L    + +  +     F +
Sbjct: 67  EAFRNLPNLRI---LDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKD-GYFRN 121

Query: 465 --SLRKLYLDFNEIKHLDA-TAFGNLDVLELLSLEHNNIAVVVKRTF--IGMPNLQIIDL 519
             +L +L L  N+I+ L    +FG L+ L+ +    N I +V +     +    L    L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 520 SFNEISMLTGEQFYFSFK------LRILNISHNRLRSLPRDVFSNTI 560
           + N +       +           L IL++S N         FSN I
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 12/184 (6%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHL--GTTILKGDQLQGIF--NSKLRELEITGKDLK 57
            + LS N+L  L++      V  LQ L                  N  L +L +    L+
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 58  FIDPSAFDNIDACYDLT----LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNM 113
               +     D    L+    L + +  +  LP G+F  +  +    L L+ N+L+VL+ 
Sbjct: 465 LAWETELCW-DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR--GLSLNSNRLTVLSH 521

Query: 114 ATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNK-ITDLNGNLFRHLQKSIVKAKKN 172
             L +N+  L      +L     +  +L  L +  NK I +   + F +           
Sbjct: 522 NDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAG 581

Query: 173 NNNN 176
              +
Sbjct: 582 PPAD 585

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  208 bits (532), Expect = 3e-59
 Identities = 133/597 (22%), Positives = 237/597 (39%), Gaps = 81/597 (13%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
            L+L HN+LS L+  T  +  T L  L    L  + +Q I N        L  L+++   
Sbjct: 77  VLNLQHNELSQLSDKTF-AFCTNLTEL---HLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 56  LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
           L          ++   +L L   N +I+ L S   D   N     L+LS N++   +   
Sbjct: 133 LSSTKLGTQVQLENLQELLLS--NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

Query: 116 LYSNVTKLQHL-------GTTILKD--REKLLSNLETLLLRCNKITDLNGNLFRHLQKSI 166
               + +L  L       G ++ +    E   +++  L L  ++++  +   F  L+   
Sbjct: 191 F-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK--- 246

Query: 167 VKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQI 226
                                +NL  L L  N +  +  + F  L  L+   L +N +Q 
Sbjct: 247 --------------------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ- 285

Query: 227 IELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILN------KNLNTLEWLAMDNNNIKNI 280
             L S+       ++ L +  S    +     +        + L  LE L M++N+I  I
Sbjct: 286 -HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 281 RNYSLYNLTSLNYINLEYNKIS--KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNL 338
           ++     L +L Y++L  +  S   + N  F    H  L  + L+ N +  IESD F  L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 339 KELNTITLSYNLLK-SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
             L  + L  N +   +    ++ L N+  I LS+N+   +  N+F  +P+L +L L+  
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 398 KLKDFN--LNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
            LK+ +   + F  + +      L+LSNN I N+ ++  +     ++ LDL +N +    
Sbjct: 465 ALKNVDSSPSPFQPLRNLTI---LDLSNNNIANINDDMLEGLE-KLEILDLQHNNLA--- 517

Query: 456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ 515
                          L  +            L  L +L+LE N    +    F  +  L+
Sbjct: 518 --------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 516 IIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI--IEKLDISYNQ 570
           IIDL  N ++ L    F     L+ LN+  N + S+ + VF      + +LD+ +N 
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (508), Expect = 5e-56
 Identities = 130/574 (22%), Positives = 207/574 (36%), Gaps = 61/574 (10%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHL-----GTTILKGDQLQGIFNSKLRELEITGKDL 56
           TLDLSHN LS   + T    +  LQ L         LK ++L    NS L++LE++   +
Sbjct: 125 TLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 57  KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATL 116
           K   P  F  I   + L L         L   L  ++ N     L LS+++LS  +  T 
Sbjct: 184 KEFSPGCFHAIGRLFGLFLN-NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 117 YS-NVTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKA 169
                T L  L         +  D    L  LE   L  N I  L  +    L       
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL- 301

Query: 170 KKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIEL 229
                           L  +     +    +  ++   F+ L  L+ L++  N +    +
Sbjct: 302 ---------------NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP--GI 344

Query: 230 NSNVFDVFEKLQLLEISFSLFNSNEFPYYIL-NKNLNTLEWLAMDNNNIKNIRNYSLYNL 288
            SN+F     L+ L +S S  +          +   + L  L +  N I  I + +   L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
             L  ++L  N+I +         +   + EI LS N    +  ++F  +  L  + L  
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 349 NLLKSI--KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNV 406
             LK++    + F+ L N+  + LS N I  I  +    L  L  LDLQ N L     + 
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

Query: 407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
                        +L                      L+L +N   E+PV   +     L
Sbjct: 524 NPGGPIYFLKGLSHL--------------------HILNLESNGFDEIPVEVFKDL-FEL 562

Query: 467 RKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTF-IGMPNLQIIDLSFNEIS 525
           + + L  N +  L A+ F N   L+ L+L+ N I  V K+ F     NL  +D+ FN   
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

Query: 526 MLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNT 559
                  +F   +  +N +H  +  L      NT
Sbjct: 623 CTCESIAWF---VNWINETHTNIPELSSHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  198 bits (506), Expect = 1e-55
 Identities = 124/592 (20%), Positives = 219/592 (36%), Gaps = 107/592 (18%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
             D SH KL+ +                           +  + +  L +T   L+ +  
Sbjct: 8   VADCSHLKLTQV------------------------PDDLPTN-ITVLNLTHNQLRRLPA 42

Query: 62  SAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
           + F        LT L +    I +L   L  K+  ++   L+L HN+LS L+  T     
Sbjct: 43  ANFTR---YSQLTSLDVGFNTISKLEPELCQKLPMLK--VLNLQHNELSQLSDKTFAF-- 95

Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV 180
                             +NL  L L  N I  +  N F                     
Sbjct: 96  -----------------CTNLTELHLMSNSIQKIKNNPFVK------------------- 119

Query: 181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL 240
                   NL TL L  N ++         L NLQEL LS NK+Q ++           L
Sbjct: 120 ------QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 241 QLLEIS---FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSL---YNLTSLNYI 294
           + LE+S      F+   F        +  L  L ++N  +       L      TS+  +
Sbjct: 174 KKLELSSNQIKEFSPGCF------HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 295 NLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI 354
           +L  +++S   N  F       L  + LS N L ++ +D+F  L +L    L YN ++ +
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 355 KTTSFKNL---------NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
            + S   L          +     +S   +  I   +F  L  L  L+++DN +     N
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

Query: 406 VFSNITSKQTPMNLNLSNNYITNLYEND---KKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
           +F+ + + +    L+LSN++ +     +      A   +  L+L+ N+I ++  +     
Sbjct: 348 MFTGLINLKY---LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 463 ADSLRKLYLDFNEIKH-LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF 521
              L  L L  NEI   L    +  L+ +  + L +N    + + +F  +P+LQ + L  
Sbjct: 405 -GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 522 NEISMLTGEQFYFS--FKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
             +  +      F     L IL++S+N + ++  D+      +E LD+ +N 
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  147 bits (373), Expect = 1e-37
 Identities = 67/292 (22%), Positives = 127/292 (43%), Gaps = 13/292 (4%)

Query: 288 LTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLS 347
            T++  +NL +N++ ++    F    + +L  + +  N +  +E +    L  L  + L 
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 348 YNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVF 407
           +N L  +   +F    N+  + L  N I+ I  N FV   NL+ LDL  N L    L   
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 408 SNITSKQTPMNLNLSNNYITNLYEND-KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
             + + Q    L LSNN I  L   +    A   +K L+LS+N+I+E            L
Sbjct: 142 VQLENLQE---LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG-RL 197

Query: 467 RKLYLDFNEIKHLDATAFGNLDV---LELLSLEHNNIAVVVKRTFIGM--PNLQIIDLSF 521
             L+L+  ++                +  LSL ++ ++     TF+G+   NL ++DLS+
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 522 NEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQDK 572
           N ++++  + F +  +L    + +N ++ L          +  L++  +  K
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  188 bits (480), Expect = 1e-53
 Identities = 70/307 (22%), Positives = 128/307 (41%), Gaps = 10/307 (3%)

Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
               L +  N IK +      +   L  + L  N +S +    F+      L+ + L +N
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN--LFNLRTLGLRSN 90

Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVN 385
            L+LI    F  L  L  + +S N +  +    F++L N+ ++ +  N + YI   AF  
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 386 LPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLD 445
           L +L +L L+   L        S++        L L +  I  + +   K+    +K L+
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIV---LRLRHLNINAIRDYSFKRLY-RLKVLE 206

Query: 446 LS-NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV 504
           +S    +  +  N L     +L  L +    +  +   A  +L  L  L+L +N I+ + 
Sbjct: 207 ISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 505 KRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEK 563
                 +  LQ I L   +++++    F     LR+LN+S N+L +L   VF +   +E 
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324

Query: 564 LDISYNQ 570
           L +  N 
Sbjct: 325 LILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  187 bits (476), Expect = 4e-53
 Identities = 80/364 (21%), Positives = 140/364 (38%), Gaps = 60/364 (16%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           + +    L L  N+I  LN + F    +L+EL L+ N +  +E     F+          
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE--PGAFN---------- 77

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
                            NL  L  L + +N +K I       L++L  +++  NKI  + 
Sbjct: 78  -----------------NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
           + +F    +  LK + + +N L  I    F  L  L  +TL    L SI T +  +L+ +
Sbjct: 121 DYMFQDLYN--LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178

Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425
           + + L    I  I   +F  L  L  L++                    TP  L   N  
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHW-----------PYLDTMTPNCLYGLN-- 225

Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG 485
                          + SL +++  +  VP   ++     LR L L +N I  ++ +   
Sbjct: 226 ---------------LTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLH 269

Query: 486 NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISH 545
            L  L+ + L    +AVV    F G+  L+++++S N+++ L    F+    L  L +  
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 546 NRLR 549
           N L 
Sbjct: 330 NPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  168 bits (427), Expect = 4e-46
 Identities = 78/365 (21%), Positives = 141/365 (38%), Gaps = 55/365 (15%)

Query: 70  CYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG-- 127
             D  +     +   +P G+  +        LDL  N++  LN     ++   L+ L   
Sbjct: 11  AQDRAVLCHRKRFVAVPEGIPTETR-----LLDLGKNRIKTLNQDEF-ASFPHLEELELN 64

Query: 128 ----TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDR 183
               + +       L NL TL LR N++  +   +F  L                     
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL--------------------- 103

Query: 184 EKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLL 243
               SNL  L +  NKI  L   +F+ LYNL+ L +  N   ++ ++   F     L+ L
Sbjct: 104 ----SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN--DLVYISHRAFSGLNSLEQL 157

Query: 244 EIS---FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINL-EYN 299
            +     +   +          +L+ L  L + + NI  IR+YS   L  L  + +  + 
Sbjct: 158 TLEKCNLTSIPTEAL------SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 300 KISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSF 359
            +  +  N  +      L  + +++  L  +      +L  L  + LSYN + +I+ +  
Sbjct: 212 YLDTMTPNCLY---GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNL 419
             L  +  I L   Q+  + P AF  L  L  L++  N+L     +VF ++ + +T   L
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET---L 325

Query: 420 NLSNN 424
            L +N
Sbjct: 326 ILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  157 bits (398), Expect = 3e-42
 Identities = 68/361 (18%), Positives = 132/361 (36%), Gaps = 61/361 (16%)

Query: 42  FNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL 101
             ++ R L++    +K ++   F +     +L L      +  +  G F+ + N+   TL
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL--NENIVSAVEPGAFNNLFNLR--TL 85

Query: 102 DLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRH 161
            L  N+L ++ +                        LSNL  L +  NKI  L   +F+ 
Sbjct: 86  GLRSNRLKLIPLGVFTG-------------------LSNLTKLDISENKIVILLDYMFQD 126

Query: 162 LQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSF 221
           L                          NL++L +  N +  ++   F  L +L++L+L  
Sbjct: 127 L-------------------------YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 222 NKLQIIELNSNVFDVFEKLQLLEIS---FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK 278
             L  I   +        L +L +     +      F      K L  L+ L + +    
Sbjct: 162 CNLTSIP--TEALSHLHGLIVLRLRHLNINAIRDYSF------KRLYRLKVLEISHWPYL 213

Query: 279 NIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNL 338
           +    +     +L  +++ +  ++ +            L+ + LS N +  IE    + L
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSYNPISTIEGSMLHEL 271

Query: 339 KELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNK 398
             L  I L    L  ++  +F+ LN +  + +S NQ+  +  + F ++ NL  L L  N 
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

Query: 399 L 399
           L
Sbjct: 332 L 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (303), Expect = 2e-29
 Identities = 41/232 (17%), Positives = 91/232 (39%), Gaps = 33/232 (14%)

Query: 340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
           +   +        ++             + L  N+IK +  + F + P+L +L+L +N +
Sbjct: 12  QDRAVLCHRKRFVAVPEGIPTETRL---LDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 400 KDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFL 459
                  F+N+ +                            +++L L +NR++ +P+   
Sbjct: 69  SAVEPGAFNNLFN----------------------------LRTLGLRSNRLKLIPLGVF 100

Query: 460 QTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519
                +L KL +  N+I  L    F +L  L+ L +  N++  +  R F G+ +L+ + L
Sbjct: 101 T-GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159

Query: 520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
               ++ +  E       L +L + H  + ++    F     ++ L+IS+  
Sbjct: 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 62/232 (26%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGI------FNSKLRELEITG-K 54
            L L    L+ +    L S++  L  L    L+   +  I         +L+ LEI+   
Sbjct: 156 QLTLEKCNLTSIPTEAL-SHLHGLIVL---RLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 55  DLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNM 113
            L  + P+    ++    LT L IT+  +  +P      +  +    L+LS+N +S +  
Sbjct: 212 YLDTMTPNCLYGLN----LTSLSITHCNLTAVPYLAVRHLVYLR--FLNLSYNPISTIEG 265

Query: 114 ATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNN 173
           + L+                    L  L+ + L   ++  +    FR L           
Sbjct: 266 SMLHE-------------------LLRLQEIQLVGGQLAVVEPYAFRGL----------- 295

Query: 174 NNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQ 225
                         + L  L +  N++T L  ++F  + NL+ L L  N L 
Sbjct: 296 --------------NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  185 bits (471), Expect = 4e-53
 Identities = 70/348 (20%), Positives = 140/348 (40%), Gaps = 27/348 (7%)

Query: 223 KLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRN 282
           + + I+ N     VF  + +   +  ++   E      +  LN  + +   N+ ++ +  
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFE------DITLNNQKIVTFKNSTMRKLPA 62

Query: 283 YSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELN 342
             L +   +  +NL   +I +I    F +     ++++ +  N +  +    F N+  L 
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402
            + L  N L S+    F N   +  + +S N ++ I  + F    +L  L L  N+L   
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180

Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
           +L++  ++         N+S N ++ L        PI ++ LD S+N I  V        
Sbjct: 181 DLSLIPSLFH------ANVSYNLLSTL------AIPIAVEELDASHNSINVVRGPVNV-- 226

Query: 463 ADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
              L  L L  N +         N   L  + L +N +  ++   F+ M  L+ + +S N
Sbjct: 227 --ELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 523 EISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
            +  L          L++L++SHN L  + R+      +E L + +N 
Sbjct: 283 RLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  159 bits (404), Expect = 1e-43
 Identities = 73/399 (18%), Positives = 146/399 (36%), Gaps = 77/399 (19%)

Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNS 231
           +    +      +  L+N + +  + + +  L   L      ++ L+L+  +++  E+++
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDT 86

Query: 232 NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
             F                              +T++ L M  N I+ +  +   N+  L
Sbjct: 87  YAF---------------------------AYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119

Query: 292 NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL 351
             + LE N +S +   +FH     +L  + +SNN LE IE DTF     L  + LS N L
Sbjct: 120 TVLVLERNDLSSLPRGIFHNT--PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

Query: 352 KSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNIT 411
             +  +   +L    +  +S+N +             + +LD   N +      V   +T
Sbjct: 178 THVDLSLIPSLF---HANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT 229

Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
                                           L L +N + +            L ++ L
Sbjct: 230 -------------------------------ILKLQHNNLTDTAWLLNYP---GLVEVDL 255

Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531
            +NE++ +    F  +  LE L + +N +   +      +P L+++DLS N +  +   Q
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQ 314

Query: 532 FYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
             F  +L  L + HN + +L         ++ L +S+N 
Sbjct: 315 PQFD-RLENLYLDHNSIVTLKLSTHHT--LKNLTLSHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (347), Expect = 9e-36
 Identities = 73/403 (18%), Positives = 145/403 (35%), Gaps = 78/403 (19%)

Query: 74  TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKD 133
            +   N+ + +LP+ L D    +E   L+L+  ++  ++                     
Sbjct: 49  IVTFKNSTMRKLPAALLDSFRQVE--LLNLNDLQIEEIDTYAFAY--------------- 91

Query: 134 REKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETL 193
                  ++ L +  N I  L  ++F+++                           L  L
Sbjct: 92  ----AHTIQKLYMGFNAIRYLPPHVFQNV-------------------------PLLTVL 122

Query: 194 LLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSN 253
           +L  N ++ L   +F +   L  LS+S N L+ IE   + F     LQ L++S +     
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTH- 179

Query: 254 EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI 313
                +    + +L    +  N +      +L    ++  ++  +N I+ +   +     
Sbjct: 180 -----VDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN---- 225

Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
              L  ++L +N   L ++    N   L  + LSYN L+ I    F  +  +  + +S N
Sbjct: 226 -VELTILKLQHN--NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 374 QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND 433
           ++  +       +P L  LDL  N L     N       +    NL L +N I  L  + 
Sbjct: 283 RLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE----NLYLDHNSIVTLKLST 337

Query: 434 KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEI 476
                  +K+L LS+N      +  L     ++ +  +D  + 
Sbjct: 338 HHT----LKNLTLSHNDWDCNSLRALFR---NVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (299), Expect = 3e-29
 Identities = 74/451 (16%), Positives = 142/451 (31%), Gaps = 125/451 (27%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
            +   ++ +  L  A L                            R++E           
Sbjct: 49  IVTFKNSTMRKLPAALL-------------------------DSFRQVE----------- 72

Query: 62  SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
                        L + + QIEE+ +  F     I++  L +  N +  L      +   
Sbjct: 73  ------------LLNLNDLQIEEIDTYAFAYAHTIQK--LYMGFNAIRYLPPHVFQN--- 115

Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS 181
                           +  L  L+L  N ++ L   +F +                    
Sbjct: 116 ----------------VPLLTVLVLERNDLSSLPRGIFHN-------------------- 139

Query: 182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
                   L TL +  N +  +  + F+   +LQ L LS N+L  ++       +   L 
Sbjct: 140 -----TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLF 189

Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKI 301
              +S++L ++              +E L   +N+I  +R      LT L    L++N +
Sbjct: 190 HANVSYNLLSTLA--------IPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNL 238

Query: 302 SKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKN 361
           +           +  L E+ LS N LE I    F  ++ L  + +S N L ++     + 
Sbjct: 239 TDTAW----LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQP 293

Query: 362 LNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL 421
           +  +  + LS N + ++  N       L  L L  N +    L+    +       NL L
Sbjct: 294 IPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLK------NLTL 346

Query: 422 SNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
           S+N   +   N  +     +    + +    
Sbjct: 347 SHN---DWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (260), Expect = 3e-24
 Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 28/244 (11%)

Query: 348 YNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF-----VNLPNLVKLDLQDNKLKDF 402
           YN+          + N   + V     I     + +     + L N   +  +++ ++  
Sbjct: 1   YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60

Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
              +  +    +    LNL++  I  +       A   I+ L +  N I+ +P +  Q  
Sbjct: 61  PAALLDSFRQVEL---LNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNV 116

Query: 463 ADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
              L  L L+ N++  L    F N   L  LS+ +NN+  +   TF    +LQ + LS N
Sbjct: 117 -PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175

Query: 523 EISMLTGEQF----------------YFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDI 566
            ++ +                          +  L+ SHN +  +   V     +  L +
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE--LTILKL 233

Query: 567 SYNQ 570
            +N 
Sbjct: 234 QHNN 237

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  190 bits (484), Expect = 4e-53
 Identities = 106/583 (18%), Positives = 208/583 (35%), Gaps = 89/583 (15%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
            +DLS N L +L   +  SN ++LQ L    L   +++ I +        L  L +TG  
Sbjct: 36  NIDLSFNPLKILKSYSF-SNFSELQWL---DLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 56  LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
           ++   P +F        L  L    T++  L S    ++  ++   L+++HN +    + 
Sbjct: 92  IQSFSPGSFSG---LTSLENLVAVETKLASLESFPIGQLITLK--KLNVAHNFIHSCKLP 146

Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
             +SN                  L+NL  + L  N I  +  N  + L++          
Sbjct: 147 AYFSN------------------LTNLVHVDLSYNYIQTITVNDLQFLRE---------- 178

Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
                            +L +  N I  +    F+ +  L EL+L  N      +     
Sbjct: 179 -----------NPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFN-SSNIMKTCL 225

Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL-----EWLAMDNNNIKNIRNYSLYNLT 289
                L +  +    F             +  L     +   +   N  +      + L 
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 290 SLNYINLEYNKISKIHNNLFHFNIH-----------------KRLKEIRLSNNYLELIES 332
           +++ ++L    I  + +   HF                      LK + L+ N   +   
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK 345

Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLN--NMLNIVLSFNQIKYIYPNAFVNLPNLV 390
                L  L+ + LS N L      S+ +L   ++ ++ LSFN    +    F+ L  L 
Sbjct: 346 --KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQ 402

Query: 391 KLDLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNN 449
            LD Q + LK     + F ++        L++S       ++         + +L ++ N
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLY---LDISYTNTKIDFDGIFLGLT-SLNTLKMAGN 458

Query: 450 RIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFI 509
             ++  ++ +     +L  L L   +++ +    F  L  L+LL++ HNN+  +    + 
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 510 GMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
            + +L  +D SFN I    G   +F   L   N+++N +  + 
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  182 bits (464), Expect = 2e-50
 Identities = 97/592 (16%), Positives = 200/592 (33%), Gaps = 73/592 (12%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
           T      KLS +    + S+   +       L  + L+ + +      S+L+ L+++  +
Sbjct: 15  TYQCMDQKLSKVP-DDIPSSTKNID------LSFNPLKILKSYSFSNFSELQWLDLSRCE 67

Query: 56  LKFIDPSAFDNIDACYDL-TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
           ++ I+  A+      + L  L +T   I+    G F  + ++E   L     KL+ L   
Sbjct: 68  IETIEDKAWHG---LHHLSNLILTGNPIQSFSPGSFSGLTSLE--NLVAVETKLASLESF 122

Query: 115 TLYSNVTKLQHL-------GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIV 167
            +   +  L+ L        +  L      L+NL  + L  N I  +  N  + L+    
Sbjct: 123 PI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR---- 177

Query: 168 KAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQII 227
                            +      +L +  N I  +    F+ +  L EL+L  N     
Sbjct: 178 -----------------ENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFN-SS 218

Query: 228 ELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL-----EWLAMDNNNIKNIRN 282
            +          L +  +    F             +  L     +   +   N  +   
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 283 YSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELN 342
              + L +++ ++L    I  + +   HF      + + +    L+   +     LK L 
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFK----WQSLSIIRCQLKQFPTLDLPFLKSLT 334

Query: 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNL--PNLVKLDLQDNKLK 400
              L+ N            L ++  + LS N + +    ++ +L   +L  LDL  N   
Sbjct: 335 ---LTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 401 DFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQ 460
             +   F  +   Q    L+  ++ +  + E     +   +  LD+S    +        
Sbjct: 390 IMS-ANFMGLEELQH---LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 461 TFADSLRKLYLDFNEIK-HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519
               SL  L +  N  K +  +  F N   L  L L    +  +    F  +  LQ++++
Sbjct: 446 GL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504

Query: 520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
           S N +  L    +   + L  L+ S NR+ +    +      +   +++ N 
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  170 bits (433), Expect = 4e-46
 Identities = 93/518 (17%), Positives = 170/518 (32%), Gaps = 86/518 (16%)

Query: 70  CYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTT 129
             ++T +  + ++ ++P  +    +      +DLS N L +L   +              
Sbjct: 11  VPNITYQCMDQKLSKVPDDIPSSTK-----NIDLSFNPLKILKSYSF------------- 52

Query: 130 ILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSN 189
                    S L+ L L   +I  +    +  L                          +
Sbjct: 53  ------SNFSELQWLDLSRCEIETIEDKAWHGLH-------------------------H 81

Query: 190 LETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSL 249
           L  L+L  N I   +   F  L +L+ L     KL    L S        L+ L ++ + 
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA--SLESFPIGQLITLKKLNVAHNF 139

Query: 250 FNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLN----YINLEYNKISKIH 305
            +S + P Y    NL  L  + +  N I+ I    L  L         +++  N I  I 
Sbjct: 140 IHSCKLPAYF--SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197

Query: 306 NNLFHFNIHKRLKEIRLSNNYL-ELIESDTFYNLKELNTITLSYNL------LKSIKTTS 358
           +  F      +L E+ L  N+    I      NL  L+   L          L+  + + 
Sbjct: 198 DQAFQ---GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 359 FKNLNN--MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP 416
            + L +  +    L++          F  L N+  + L    +K                
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF-----KW 309

Query: 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEI 476
            +L++    +      D       +KSL L+ N+              SL  L L  N +
Sbjct: 310 QSLSIIRCQLKQFPTLDLPF----LKSLTLTMNKGSISFKK---VALPSLSYLDLSRNAL 362

Query: 477 KHLDATAFGNLDV--LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLT-GEQFY 533
                 ++ +L    L  L L  N   +++   F+G+  LQ +D   + +  +T    F 
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421

Query: 534 FSFKLRILNISHNRLRSLPRDVFSNTI-IEKLDISYNQ 570
              KL  L+IS+   +     +F     +  L ++ N 
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  133 bits (336), Expect = 3e-33
 Identities = 78/411 (18%), Positives = 144/411 (35%), Gaps = 49/411 (11%)

Query: 1   MTLDLSHNKLSVLNMATLYSNVTKLQHL------GTTILKGDQLQGIFNSKLRELEITG- 53
           ++LD+S N +  +          KL  L       ++ +    LQ +    +  L +   
Sbjct: 184 LSLDMSLNPIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 54  ---KDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSV 110
              ++L+  +PS  + +        ++T T         F  + N+    + L+   +  
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS--AMSLAGVSIKY 299

Query: 111 LNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAK 170
           L     +     L  +   + +     L  L++L L  NK +     +            
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA----------- 348

Query: 171 KNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLY--NLQELSLSFNKLQIIE 228
                           L +L  L L  N ++      +  L   +L+ L LSFN   I+ 
Sbjct: 349 ----------------LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM- 391

Query: 229 LNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNL 288
             S  F   E+LQ L+   S         +    +L  L +L +   N K   +     L
Sbjct: 392 --SANFMGLEELQHLDFQHSTLKR--VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
           TSLN + +  N       +   F     L  + LS   LE I    F  L  L  + +S+
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
           N L  + ++ +  L ++  +  SFN+I+           +L   +L +N +
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  177 bits (451), Expect = 7e-49
 Identities = 92/533 (17%), Positives = 199/533 (37%), Gaps = 67/533 (12%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
           +LDLS NK++ +    L       +                 + L+ L +    +  I+ 
Sbjct: 30  SLDLSFNKITYIGHGDL-------RAC---------------ANLQVLILKSSRINTIEG 67

Query: 62  SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
            AF ++ +   L L  ++  +  L S  F  + +++   L+L  N    L + +L+ N+T
Sbjct: 68  DAFYSLGSLEHLDL--SDNHLSSLSSSWFGPLSSLK--YLNLMGNPYQTLGVTSLFPNLT 123

Query: 122 KLQHLG-------TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
            LQ L        + I +     L++L  L ++   + +      + ++  I     + +
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR-DIHHLTLHLS 182

Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
            +   +     +LS++  L LR   +     +          +     +  ++   S   
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN- 241

Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
                 +LL++   +   +E      +  LN L     + +    +         ++  +
Sbjct: 242 ------ELLKLLRYILELSEV--EFDDCTLNGLGDF--NPSESDVVSELGKVETVTIRRL 291

Query: 295 NLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI 354
           ++    +    + ++     +++K I + N+ + L+      +LK L  + LS NL+   
Sbjct: 292 HIPQFYLFYDLSTVYSLL--EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 355 K---TTSFKNLNNMLNIVLSFNQIKYI--YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
               +       ++  +VLS N ++ +       + L NL  LD+  N       +    
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQW 408

Query: 410 ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL 469
               +    LNLS+  I  +        P  ++ LD+SNN +    +         L++L
Sbjct: 409 PEKMRF---LNLSSTGIRVVKTC----IPQTLEVLDVSNNNLDSFSLFL-----PRLQEL 456

Query: 470 YLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
           Y+  N++K L   +     VL ++ +  N +  V    F  + +LQ I L  N
Sbjct: 457 YISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  168 bits (428), Expect = 8e-46
 Identities = 91/455 (20%), Positives = 169/455 (37%), Gaps = 57/455 (12%)

Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
           L + +++L L  NKIT +     R                           +NL+ L+L+
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRAC-------------------------ANLQVLILK 58

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
            ++I  + G+ F  L +L+ L LS N L    L+S+ F     L+ L +  + + +    
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLS--SLSSSWFGPLSSLKYLNLMGNPYQT--LG 114

Query: 257 YYILNKNLNTLEWLAMDNNN-IKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK 315
              L  NL  L+ L + N      IR      LTSLN + ++   +    +        +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI--R 172

Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
            +  + L  +    +       L  +  + L    L   + +          +     + 
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 376 KYIYPNAFVNLPNLVK----------LDLQDNKLKDFNLN---VFSNITSKQTPM--NLN 420
             +   +F  L  L++           D   N L DFN +   V S +   +T     L+
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHL- 479
           +   Y+              +K + + N+++  VP +F Q    SL  L L  N +    
Sbjct: 293 IPQFYLFYDLSTVYSLLE-KVKRITVENSKVFLVPCSFSQHL-KSLEFLDLSENLMVEEY 350

Query: 480 --DATAFGNLDVLELLSLEHNNIAVVVK--RTFIGMPNLQIIDLSFNEISMLTGEQFYFS 535
             ++   G    L+ L L  N++  + K     + + NL  +D+S N    +  +   + 
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWP 409

Query: 536 FKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
            K+R LN+S   +R +   +     +E LD+S N 
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQT--LEVLDVSNNN 442

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  166 bits (423), Expect = 4e-45
 Identities = 92/508 (18%), Positives = 186/508 (36%), Gaps = 43/508 (8%)

Query: 74  TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG------ 127
                +     +PSGL   ++     +LDLS NK++ +    L      LQ L       
Sbjct: 9   VCDGRSRSFTSIPSGLTAAMK-----SLDLSFNKITYIGHGDL-RACANLQVLILKSSRI 62

Query: 128 TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLL 187
            TI  D    L +LE L L  N ++ L+ + F  L          N      V+     L
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 188 SNLETL-LLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
           +NL+TL +      +++    F  L +L EL +    L+  +  S        +  L + 
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ--SQSLKSIRDIHHLTLH 180

Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
               + + F   I    L+++ +L + + N+   +   L      + +     + S + +
Sbjct: 181 L---SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
             F         E+     Y+  +    F +         + +    +          + 
Sbjct: 238 ESF--------NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
            + +    + Y     +  L  + ++ ++++K+     +   ++ S +    L+LS N +
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF---LDLSENLM 346

Query: 427 TNLYENDK--KQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDAT 482
              Y  +   K A   +++L LS N ++ +     +      +L  L +  N    +   
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ-KTGEILLTLKNLTSLDISRNTFHPMP-D 404

Query: 483 AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
           +    + +  L+L    I VV          L+++D+S N +         F  +L+ L 
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSF----SLFLPRLQELY 457

Query: 543 ISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
           IS N+L++LP        +  + IS NQ
Sbjct: 458 ISRNKLKTLPDASLFPV-LLVMKISRNQ 484

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (326), Expect = 4e-32
 Identities = 74/464 (15%), Positives = 172/464 (37%), Gaps = 68/464 (14%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLG------TTILKGDQLQGIFNSKLRELEITGKD 55
            L+L  N    L + +L+ N+T LQ L        + ++     G+ +  L ELEI    
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS--LNELEIKALS 159

Query: 56  LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL---DLSHNKLSVLN 112
           L+     +  +I   + LTL    ++   L     D + ++  + L   +L+  + S L 
Sbjct: 160 LRNYQSQSLKSIRDIHHLTL--HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 113 MATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCN--KITDLNGNLFRHLQKSIVKAK 170
           +  + S + KL   G+ +  +    L  L   +L  +  +  D   N       S     
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277

Query: 171 KNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELN 230
                 E            +  L +    +      ++  L  ++ +++  +K+ ++   
Sbjct: 278 SELGKVE---------TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP-- 326

Query: 231 SNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYS--LYNL 288
            +     + L+ L++S +L                +L+ L +  N++++++     L  L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
            +L  +++  N    + ++       ++++ + LS+  + ++++     L+ L+   +S 
Sbjct: 387 KNLTSLDISRNTFHPMPDS---CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD---VSN 440

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
           N L S        L  +  + +S N++K +   +    P L+ + +  N+LK     +F 
Sbjct: 441 NNLDSF----SLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFD 494

Query: 409 NITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ 452
            +TS                            ++ + L  N   
Sbjct: 495 RLTS----------------------------LQKIWLHTNPWD 510

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  174 bits (444), Expect = 7e-48
 Identities = 110/582 (18%), Positives = 212/582 (36%), Gaps = 97/582 (16%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
            LDLS N L  L   +   +  +LQ L    L   ++Q I +      S L  L +TG  
Sbjct: 32  NLDLSFNPLRHLGSYSF-FSFPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 56  LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
           ++ +   AF        L  L    T +  L +     ++ ++   L+++HN +    + 
Sbjct: 88  IQSLALGAFSG---LSSLQKLVAVETNLASLENFPIGHLKTLK--ELNVAHNLIQSFKLP 142

Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
             +SN                  L+NLE L L  NKI  +     R L +          
Sbjct: 143 EYFSN------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQ---------- 174

Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
                      +     +L L  N +  +    F+ +  L +L+L  N   +  +     
Sbjct: 175 -----------MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL-NVMKTCI 221

Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
                L++  +    F +                       N++     +L  L +L   
Sbjct: 222 QGLAGLEVHRLVLGEFRNE---------------------GNLEKFDKSALEGLCNLTIE 260

Query: 295 NLEYNKISKIHNNLFH-FNIHKRLKEIRLSNNYLELIESDTF-YNLKELNTITLSYNLLK 352
                 +    +++   FN    +    L +  +E ++  ++ +  + L  +   +    
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL--KDFNLNVFSNI 410
           ++K  S K L        + N+       + V+LP+L  LDL  N L  K          
Sbjct: 321 TLKLKSLKRLT------FTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 411 TSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLY 470
           TS +    L+LS N +  +  N        ++ LD  ++ ++++    +     +L  L 
Sbjct: 373 TSLKY---LDLSFNGVITMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 471 LDFNEIKHLDATAFGNLDVLELLSLEHNNIA-VVVKRTFIGMPNLQIIDLSFNEISMLTG 529
           +     +      F  L  LE+L +  N+     +   F  + NL  +DLS  ++  L+ 
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 530 EQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
             F     L++LN++ N+L+S+P  +F   T ++K+ +  N 
Sbjct: 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  150 bits (380), Expect = 4e-39
 Identities = 73/398 (18%), Positives = 150/398 (37%), Gaps = 29/398 (7%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L  + + L L  N +  L    F     LQ L LS  ++Q IE     +     L  L +
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLIL 83

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
           + +   S        +  L++L+ L     N+ ++ N+ + +L +L  +N+ +N I    
Sbjct: 84  TGNPIQS--LALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKEL----NTITLSYNLLKSIKTTSFKN 361
              + F+    L+ + LS+N ++ I       L ++     ++ LS N +  I+  +FK 
Sbjct: 141 LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 362 LNNMLNIVLSFNQIKY-IYPNAFVNLPNLVKLDLQ------DNKLKDFNLNVFSNITSKQ 414
           +  +  + L  N     +       L  L    L       +  L+ F+ +    + +  
Sbjct: 200 I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 415 TPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN 474
                 L+          D       + S  L +  I+ V      ++    + L L   
Sbjct: 259 I-EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLELVNC 314

Query: 475 EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM--LTGEQF 532
           +          +L  L   S +  N       + + +P+L+ +DLS N +S      +  
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNA-----FSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 533 YFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
           + +  L+ L++S N + ++  +      +E LD  ++ 
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  148 bits (375), Expect = 2e-38
 Identities = 89/448 (19%), Positives = 169/448 (37%), Gaps = 55/448 (12%)

Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
           L  + + L L  N +  L    F                              L+ L L 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFS-------------------------FPELQVLDLS 60

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
             +I  +    ++ L +L  L L+ N +Q   L    F     LQ L    +   S    
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLAS--LE 116

Query: 257 YYILNKNLNTLEWLAMDNNNIKNI-RNYSLYNLTSLNYINLEYNKISKIHNNLFHF--NI 313
            + +  +L TL+ L + +N I++        NLT+L +++L  NKI  I+         +
Sbjct: 117 NFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK-SIKTTSFKNL------NNML 366
                 + LS N +  I+   F  ++ L+ +TL  N    ++  T  + L        +L
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
               +   ++    +A   L NL   + +   L  +  ++           + +L +  I
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGN 486
             + +          + L+L N +  + P   L+    SL++L    N+  +    +  +
Sbjct: 295 ERVKDFSYNFG---WQHLELVNCKFGQFPTLKLK----SLKRLTFTSNKGGNA--FSEVD 345

Query: 487 LDVLELLSLEHNNIAV--VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS 544
           L  LE L L  N ++      ++  G  +L+ +DLSFN +  ++   F    +L  L+  
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 404

Query: 545 HNRLRSLP-RDVFSN-TIIEKLDISYNQ 570
           H+ L+ +    VF +   +  LDIS+  
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTH 432

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  111 bits (279), Expect = 5e-26
 Identities = 59/257 (22%), Positives = 111/257 (43%), Gaps = 13/257 (5%)

Query: 305 HNNLFHF--NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL 362
             N +    N+    K + LS N L  + S +F++  EL  + LS   +++I+  ++++L
Sbjct: 16  ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 363 NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
           +++  ++L+ N I+ +   AF  L +L KL   +  L         ++ + +    LN++
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE---LNVA 132

Query: 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD---SLRKLYLDFNEIKHL 479
           +N I +    +       ++ LDLS+N+IQ +    L+           L L  N +  +
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 480 DATAFGNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEISM---LTGEQFYFS 535
              AF  +  L  L+L +N  ++ V+K    G+  L++  L   E      L        
Sbjct: 193 QPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 536 FKLRILNISHNRLRSLP 552
             L  L I   RL  L 
Sbjct: 252 EGLCNLTIEEFRLAYLD 268

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 9e-14
 Identities = 53/308 (17%), Positives = 106/308 (34%), Gaps = 46/308 (14%)

Query: 3   LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ-GIFNSKLRELEITGKDLKFIDP 61
             L++    + ++  L++ +T +       +  ++++   +N   + LE+          
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 62  SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY-SNV 120
               ++       L  T+ +     S     + ++E   LDLS N LS     +      
Sbjct: 322 LKLKSLK-----RLTFTSNKGGNAFS--EVDLPSLE--FLDLSRNGLSFKGCCSQSDFGT 372

Query: 121 TKLQHL-----GTTILKDREKLLSNLETLLLRCNKITDL-NGNLFRHLQKSIVKAKKNNN 174
           T L++L     G   +      L  LE L  + + +  +   ++F  L            
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL------------ 420

Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
                         NL  L +           +F  L +L+ L ++ N  Q      ++F
Sbjct: 421 -------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-FLPDIF 466

Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
                L  L++S                +L++L+ L M +N +K++ +     LTSL  I
Sbjct: 467 TELRNLTFLDLSQCQLEQ--LSPTAF-NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523

Query: 295 NLEYNKIS 302
            L  N   
Sbjct: 524 WLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 57/231 (24%)

Query: 2   TLDLSHNKLSVLNMATLY-SNVTKLQHLGTTILKGDQLQGIFN-----SKLRELEITGKD 55
            LDLS N LS     +      T L++L    L  + +  + +      +L  L+    +
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYL---DLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 56  LKFIDP-SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
           LK +   S F ++     + L I++T      +G+F+ + ++E   L ++ N      + 
Sbjct: 408 LKQMSEFSVFLSLRNL--IYLDISHTHTRVAFNGIFNGLSSLE--VLKMAGNSFQENFLP 463

Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
            +++                   L NL  L L   ++  L+   F  L            
Sbjct: 464 DIFTE------------------LRNLTFLDLSQCQLEQLSPTAFNSL------------ 493

Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQ 225
                        S+L+ L +  N++  +   +F  L +LQ++ L  N   
Sbjct: 494 -------------SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  173 bits (440), Expect = 5e-47
 Identities = 103/587 (17%), Positives = 205/587 (34%), Gaps = 82/587 (13%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKD 55
            LDLS N L  L   +   +  +LQ L    L   ++Q I +      S L  L +TG  
Sbjct: 32  NLDLSFNPLRHLGSYSF-FSFPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 56  LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
           ++ +   AF        L  L    T +  L +     ++ ++   L+++HN +    + 
Sbjct: 88  IQSLALGAFSG---LSSLQKLVAVETNLASLENFPIGHLKTLK--ELNVAHNLIQSFKLP 142

Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
             +SN                  L+NLE L L  NKI  +     R L +          
Sbjct: 143 EYFSN------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQ---------- 174

Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
                      +     +L L  N +  +    F+ +  L +L+L  N   +  +     
Sbjct: 175 -----------MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL-NVMKTCI 221

Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY------SLYNL 288
                L++  +    F +           L  L  L ++   +  +  Y          L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
           T+++  +L    I ++ +  ++F      + + L N       +    +LK L      +
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFG----WQHLELVNCKFGQFPTLKLKSLKRLT-----F 332

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIY--PNAFVNLPNLVKLDLQDNKLKDFNLNV 406
              K     S  +L ++  + LS N + +      +     +L  LDL  N +   + N 
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN- 391

Query: 407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
           F  +   +    L+  ++ +  + E     +   +  LD+S+   +            SL
Sbjct: 392 FLGLEQLEH---LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSL 447

Query: 467 RKLYLDFNEIK-HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
             L +  N  + +     F  L  L  L L    +  +    F  + +LQ++++S N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 526 MLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI--IEKLDISYNQ 570
            L    +     L++L+ S N + +  +    +    +  L+++ N 
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  144 bits (364), Expect = 8e-37
 Identities = 72/397 (18%), Positives = 151/397 (38%), Gaps = 27/397 (6%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L  + + L L  N +  L    F     LQ L LS  ++Q IE     +     L  L +
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLIL 83

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
           +    N  +         L++L+ L     N+ ++ N+ + +L +L  +N+ +N I    
Sbjct: 84  T---GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKEL----NTITLSYNLLKSIKTTSFKN 361
              + F+    L+ + LS+N ++ I       L ++     ++ LS N +  I+  +FK 
Sbjct: 141 LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 362 LNNMLNIVLSFNQIKY-IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN 420
           +  +  + L  N     +       L  L    L   + ++       + ++ +   NL 
Sbjct: 200 I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 421 LSNNYITNLYENDKKQAPI-----YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNE 475
           +    +  L         +      + S  L +  I+ V      ++    + L L   +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLELVNCK 315

Query: 476 IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM--LTGEQFY 533
                     +L  L   S +  N       + + +P+L+ +DLS N +S      +  +
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNA-----FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 534 FSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
            +  L+ L++S N + ++  +      +E LD  ++ 
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (356), Expect = 9e-36
 Identities = 90/448 (20%), Positives = 166/448 (37%), Gaps = 55/448 (12%)

Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
           L  + + L L  N +  L    F                              L+ L L 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFS-------------------------FPELQVLDLS 60

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
             +I  +    ++ L +L  L L+ N +Q   L    F     LQ L    +   S E  
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 257 YYILNKNLNTLEWLAMDNNNIKNI-RNYSLYNLTSLNYINLEYNKISKIHNNLFHF--NI 313
                 +L TL+ L + +N I++        NLT+L +++L  NKI  I+         +
Sbjct: 119 PI---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK-SIKTTSFKNLNNM------L 366
                 + LS N +  I+   F  ++ L+ +TL  N    ++  T  + L  +      L
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
               +   ++    +A   L NL   + +   L  +  ++           + +L +  I
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGN 486
             + +          + L+L N +  + P   L++         L F   K  +A +  +
Sbjct: 295 ERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSL------KRLTFTSNKGGNAFSEVD 345

Query: 487 LDVLELLSLEHNNIAV--VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS 544
           L  LE L L  N ++      ++  G  +L+ +DLSFN +  ++   F    +L  L+  
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQ 404

Query: 545 HNRLRSL-PRDVFSN-TIIEKLDISYNQ 570
           H+ L+ +    VF +   +  LDIS+  
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTH 432

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  131 bits (332), Expect = 1e-32
 Identities = 57/320 (17%), Positives = 119/320 (37%), Gaps = 19/320 (5%)

Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN 324
            + + L +  N ++++ +YS ++   L  ++L   +I  I +  +       L  + L+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--LSHLSTLILTG 85

Query: 325 NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI-YPNAF 383
           N ++ +    F  L  L  +      L S++     +L  +  + ++ N I+    P  F
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP-MNLNLSNNYITNLYENDKKQAPIYIK 442
            NL NL  LDL  NK++         +       ++L+LS N +  +     K+  I + 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLH 203

Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNE------IKHLDATAFGNLDVLELLSLE 496
            L L NN      +         L    L   E      ++  D +A   L  L +    
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 497 HNNI---AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR 553
              +      +   F  + N+    L    I  +  + F ++F  + L + + +    P 
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT 321

Query: 554 DVFSNTIIEKLDISYNQDKI 573
               +  +++L  + N+   
Sbjct: 322 LKLKS--LKRLTFTSNKGGN 339

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  130 bits (329), Expect = 3e-32
 Identities = 85/510 (16%), Positives = 184/510 (36%), Gaps = 65/510 (12%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHL--GTTILKGDQLQGIFN--SKLRELEITGKDLK 57
            L      L+ L    +  ++  L+ L     +++  +L   F+  + L  L+++   ++
Sbjct: 104 KLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 58  FIDPSAFDNIDA--CYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
            I  +    +      +L+L ++   +  +  G F   + I    L L +N  S+  M T
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLHKLTLRNNFDSLNVMKT 219

Query: 116 LYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNN 175
               +  L+            +   +         +   + +    L    ++  +    
Sbjct: 220 CIQGLAGLE------------VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 176 N--EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV 233
           +   D + D    L+N+ +  L    I  +    F + +  Q L L   K          
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF-----GQFP 320

Query: 234 FDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI--KNIRNYSLYNLTSL 291
               + L+ L      F SN+        +L +LE+L +  N +  K   + S +  TSL
Sbjct: 321 TLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 292 NYINLEYNKISKIHNNLFH----------------------FNIHKRLKEIRLSNNYLEL 329
            Y++L +N +  + +N                         F   + L  + +S+ +  +
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 330 IESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPN 388
             +  F  L  L  + ++ N   ++     F  L N+  + LS  Q++ + P AF +L +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSN 448
           L  L++  N     +   +  + S Q    L+ S N+I    + + +  P  +  L+L+ 
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQV---LDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 449 NRIQ-EVPVNFLQTFADSLRKLYLDFNEIK 477
           N             +    R+L ++   ++
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERME 582

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  107 bits (270), Expect = 9e-25
 Identities = 62/282 (21%), Positives = 118/282 (41%), Gaps = 20/282 (7%)

Query: 305 HNNLFHF--NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL 362
             N +    N+    K + LS N L  + S +F++  EL  + LS   +++I+  ++++L
Sbjct: 16  ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 363 NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
           +++  ++L+ N I+ +   AF  L +L KL   +  L         ++ + +    LN++
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE---LNVA 132

Query: 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFA---DSLRKLYLDFNEIKHL 479
           +N I +    +       ++ LDLS+N+IQ +    L+           L L  N +  +
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 480 DATAFGNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEIS---MLTGEQFYFS 535
              AF  +  L  L+L +N  ++ V+K    G+  L++  L   E      L        
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 536 FKLRILNISHNRLRSL------PRDVFSN-TIIEKLDISYNQ 570
             L  L I   RL  L        D+F+  T +    +    
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 67/423 (15%), Positives = 151/423 (35%), Gaps = 57/423 (13%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
            L L +N  S+  M T    +  L+      L   + +   N            L+  D 
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHR---LVLGEFRNEGN------------LEKFDK 248

Query: 62  SAFDNIDACYDLTLKIT-NTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
           SA + +        ++       +    LF+ + N+   +  L    +  +   +     
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS--SFSLVSVTIERVKDFSYNFGW 306

Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLF-RHLQKSIVKAKKNNNNNEDQ 179
             L+ +     +     L +L+ L    NK  +    +    L+   +   +N  + +  
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE--FLDLSRNGLSFKGC 364

Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEK 239
            S  +   ++L+ L L  N +  ++ N F  L  L+ L    + L+ +    +VF     
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRN 422

Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK-NIRNYSLYNLTSLNYINLEY 298
           L  L+IS +          I N  L++LE L M  N+ + N        L +L +++L  
Sbjct: 423 LIYLDISHTHTRV--AFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 299 NKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS 358
            ++ ++    F+      L+ + +S+N    +++  +  L  L  +  S N + + K   
Sbjct: 480 CQLEQLSPTAFNS--LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 359 FKNLNNML---------------------------NIVLSFNQIKYIYPNAFVNLPNLVK 391
            ++  + L                            +++   +++   P+    +P ++ 
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLS 596

Query: 392 LDL 394
           L++
Sbjct: 597 LNI 599

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  172 bits (438), Expect = 6e-47
 Identities = 70/344 (20%), Positives = 139/344 (40%), Gaps = 27/344 (7%)

Query: 227 IELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
           I+ N     VF  + +   +  ++   E      +  LN  + +   N+ ++ +    L 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFE------DITLNNQKIVTFKNSTMRKLPAALLD 72

Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITL 346
           +   +  +NL   +I +I    F +     ++++ +  N +  +    F N+  L  + L
Sbjct: 73  SFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130

Query: 347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNV 406
             N L S+    F N   +  + +S N ++ I  + F    +L  L L  N+L   +L++
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 190

Query: 407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
             ++       + N+S N ++ L        PI ++ LD S+N I  V           L
Sbjct: 191 IPSLF------HANVSYNLLSTL------AIPIAVEELDASHNSINVVRGPVNV----EL 234

Query: 467 RKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM 526
             L L  N +         N   L  + L +N +  ++   F+ M  L+ + +S N +  
Sbjct: 235 TILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292

Query: 527 LTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
           L          L++L++SHN L  + R+      +E L + +N 
Sbjct: 293 LNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  127 bits (320), Expect = 3e-31
 Identities = 79/363 (21%), Positives = 137/363 (37%), Gaps = 55/363 (15%)

Query: 138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRC 197
           L+N + +  + + +  L   L     + +     N+   E+  +        ++ L +  
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
           N I  L  ++F+++  L  L L  N L    L   +F                       
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIF----------------------- 143

Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
                N   L  L+M NNN++ I + +    TSL  + L  N+++ +  +L        L
Sbjct: 144 ----HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI-----PSL 194

Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
               +S N L      T      +  +  S+N +  ++      L     + L  N +  
Sbjct: 195 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLTD 246

Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA 437
                 +N P LV++DL  N+L+    + F  +   +    L +SNN +  L    +   
Sbjct: 247 T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER---LYISNNRLVALNLYGQPIP 301

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
              +K LDLS+N +  V  N  Q   D L  LYLD N I  L  +       L+ L+L H
Sbjct: 302 --TLKVLDLSHNHLLHVERNQPQF--DRLENLYLDHNSIVTLKLSTHHT---LKNLTLSH 354

Query: 498 NNI 500
           N+ 
Sbjct: 355 NDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (315), Expect = 1e-30
 Identities = 84/520 (16%), Positives = 172/520 (33%), Gaps = 86/520 (16%)

Query: 44  SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDL 103
           +  + +      ++ +  +  D+      L L   + QIEE+ +  F     I++  L +
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQK--LYM 106

Query: 104 SHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQ 163
             N +  L      +                   +  L  L+L  N ++ L   +F +  
Sbjct: 107 GFNAIRYLPPHVFQN-------------------VPLLTVLVLERNDLSSLPRGIFHN-- 145

Query: 164 KSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK 223
                                     L TL +  N +  +  + F+   +LQ L LS N+
Sbjct: 146 -----------------------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 224 LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
           L  ++       +   L    +S++L ++              +E L   +N+I  +R  
Sbjct: 183 LTHVD-----LSLIPSLFHANVSYNLLSTLA--------IPIAVEELDASHNSINVVRGP 229

Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
               LT L    L++N ++           +  L E+ LS N LE I    F  ++ L  
Sbjct: 230 VNVELTIL---KLQHNNLTDTAW----LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282

Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
           + +S N L ++     + +  +  + LS N + ++  N       L  L L  N +    
Sbjct: 283 LYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLK 340

Query: 404 LNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFA 463
           L+    +       NL LS+N           +        D   +   +  +       
Sbjct: 341 LSTHHTLK------NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCK 394

Query: 464 DSLRKL------YLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII 517
           +S +        Y+    +      A G     + ++   +    + ++  + +   + +
Sbjct: 395 ESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQL 454

Query: 518 DLSFNEISM----LTGEQFYFSFKLRILNISHNRLRSLPR 553
           +   NE+      LT EQ      L+ L+   +      R
Sbjct: 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  162 bits (411), Expect = 4e-44
 Identities = 93/398 (23%), Positives = 164/398 (41%), Gaps = 34/398 (8%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L +++  + L  N I +LN   F  L +LQ L +      +  + +N F     L +L++
Sbjct: 28  LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL-VIRNNTFRGLSSLIILKL 86

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN--IRNYSLYNLTSLNYINLEYNKISK 303
            ++ F          N  L  LE L +   N+    +       LTSL  + L  N I K
Sbjct: 87  DYNQFLQ--LETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143

Query: 304 IHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
           I    F F   +R   + L+ N ++ I  +   N +  +   L               L+
Sbjct: 144 IQPASF-FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLS 188

Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
           ++    ++   + +          ++  LDL  N  K+     F +  +     +L LSN
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 424 NYI--TNLYENDKKQAP---------IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLD 472
           +Y   ++    + K              +K+ DLS ++I  +  +    F D L +L L 
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLA 307

Query: 473 FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF 532
            NEI  +D  AF  L  L  L+L  N +  +  R F  +  L+++DLS+N I  L  + F
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367

Query: 533 YFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYN 569
                L+ L +  N+L+S+P  +F   T ++K+ +  N
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  153 bits (388), Expect = 6e-41
 Identities = 86/429 (20%), Positives = 156/429 (36%), Gaps = 63/429 (14%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHL--GTTILKGDQLQGIFN--SKLRELEITGKDLK 57
            +DLS N ++ LN  T +S +  LQ L               F   S L  L++      
Sbjct: 34  YVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 58  FIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
            ++  AF+ +     LTL   N     L    F  + ++E   L L  N +  +  A+ +
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE--MLVLRDNNIKKIQPASFF 150

Query: 118 SNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNE 177
            N                  +     L L  NK+  +      + Q       + ++   
Sbjct: 151 LN------------------MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT- 191

Query: 178 DQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVF 237
                            +    +            ++  L LS N  +            
Sbjct: 192 --------------LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES---------- 227

Query: 238 EKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNL--TSLNYIN 295
               + +  F      +    IL+ + N        + N K+  N++   L  + +   +
Sbjct: 228 ----MAKRFFDAIAGTKIQSLILSNSYNMGSSF--GHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 296 LEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIK 355
           L  +KI  +  ++F       L+++ L+ N +  I+ + F+ L  L  + LS N L SI 
Sbjct: 282 LSKSKIFALLKSVFSH--FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 356 TTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQT 415
           +  F+NL+ +  + LS+N I+ +   +F+ LPNL +L L  N+LK     +F  +TS Q 
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399

Query: 416 PMNLNLSNN 424
              + L  N
Sbjct: 400 ---IWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  150 bits (381), Expect = 6e-40
 Identities = 80/392 (20%), Positives = 151/392 (38%), Gaps = 42/392 (10%)

Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
           L +++  + L  N I +LN   F  LQ       +         ++  + LS+L  L L 
Sbjct: 28  LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF----SLFNS 252
            N+   L    F  L NL+ L+L+   L    L+ N F     L++L +       +  +
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 253 NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLN--YINLEYNKISKIHNNLFH 310
           + F       N+     L +  N +K+I    L N    +   + L    +  ++     
Sbjct: 148 SFF------LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 311 ------FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTI-------------TLSYNLL 351
                    +  +  + LS N  +   +  F++      I             +  +   
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 352 KSIKTTSFKNL--NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
           K     +FK L  + +    LS ++I  +  + F +  +L +L L  N++   + N F  
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 410 ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLR 467
           +T       LNLS N++ ++     +     ++ LDLS N I+ +      +F    +L+
Sbjct: 322 LTHLLK---LNLSQNFLGSIDSRMFENLD-KLEVLDLSYNHIRALGDQ---SFLGLPNLK 374

Query: 468 KLYLDFNEIKHLDATAFGNLDVLELLSLEHNN 499
           +L LD N++K +    F  L  L+ + L  N 
Sbjct: 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  147 bits (372), Expect = 9e-39
 Identities = 81/331 (24%), Positives = 128/331 (38%), Gaps = 29/331 (8%)

Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSN 324
            + ++ +  N+I  +   S   L  L ++ +E       I NN F       L  ++L  
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL--SSLIILKLDY 88

Query: 325 NYLELIESDTFYNLKELNTITLSYNLLKS--IKTTSFKNLNNMLNIVLSFNQIKYIYPN- 381
           N    +E+  F  L  L  +TL+   L    +    FK L ++  +VL  N IK I P  
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPI-- 439
            F+N+     LDL  NK+K        N   K     L LS+  + ++ E          
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF-TLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 440 -----YIKSLDLSNNRIQEVP------------VNFLQTFADSLRKLYLDFNEIKHLDAT 482
                 I +LDLS N  +E              +  L                 K  D  
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 483 AFGNLDV--LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRI 540
            F  L+   ++   L  + I  ++K  F    +L+ + L+ NEI+ +    F+    L  
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327

Query: 541 LNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
           LN+S N L S+   +F N   +E LD+SYN 
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  111 bits (279), Expect = 2e-26
 Identities = 51/287 (17%), Positives = 103/287 (35%), Gaps = 31/287 (10%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVL 370
            +   +  + LS N +  +   +F  L++L  + +        I+  +F+ L++++ + L
Sbjct: 27  ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNL--NVFSNITSKQTPMNLNLSNNYITN 428
            +NQ   +   AF  L NL  L L    L    L  N F  +TS +    L L +N I  
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM---LVLRDNNIKK 143

Query: 429 LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS-LRKLYLDFNEIKHLDAT----- 482
           +              LDL+ N+++ +    L  F       L L    ++ ++       
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203

Query: 483 ---AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNL-------------QIIDLSFNEISM 526
                     +  L L  N     + + F                               
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 527 LTGEQFY--FSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
                F    +  ++  ++S +++ +L + VFS+ T +E+L ++ N+
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 48/221 (21%)

Query: 5   LSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAF 64
           ++  K+  L ++  Y+  +   H           +G+  S ++  +++   +  +  S F
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295

Query: 65  DNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ 124
            +      LTL     +I ++    F  + ++    L+LS N L  ++     +      
Sbjct: 296 SHFTDLEQLTL--AQNEINKIDDNAFWGLTHLL--KLNLSQNFLGSIDSRMFEN------ 345

Query: 125 HLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDRE 184
                        L  LE L L  N I  L    F  L                      
Sbjct: 346 -------------LDKLEVLDLSYNHIRALGDQSFLGL---------------------- 370

Query: 185 KLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQ 225
               NL+ L L  N++  +   +F  L +LQ++ L  N   
Sbjct: 371 ---PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  167 bits (424), Expect = 5e-44
 Identities = 92/561 (16%), Positives = 189/561 (33%), Gaps = 75/561 (13%)

Query: 44  SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQM--TL 101
           ++L+ L               D      +LT  ++  +   +         + +Q     
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDE-----ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

Query: 102 DLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL---------LSNLETLLLRCNKIT 152
           DL  + ++           +++    T I     ++         L+ L+ +    +  T
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFT 461

Query: 153 DLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR-CNKITDLNGNLFRHL 211
             N  +      S      +     +        L +L  + L  C  +T L   L+  L
Sbjct: 462 YDNIAVDWEDANS------DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DL 514

Query: 212 YNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLA 271
             LQ L+++ N+        +   +      L                       ++   
Sbjct: 515 PELQSLNIACNRG------ISAAQLKADWTRLADDED--------------TGPKIQIFY 554

Query: 272 MDNNNIKNI-RNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELI 330
           M  NN++    + SL  +  L  ++  +NK+  +      F  + +L +++L  N +E I
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA----FGTNVKLTDLKLDYNQIEEI 610

Query: 331 ESDTFYNLKELNTITLSYNLLKSI-KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP-- 387
             D      ++  +  S+N LK I    + K++  M ++  S+N+I     N   ++   
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 388 ---NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI--- 441
              N   + L  N+++ F   +F+  +   T   + LSNN +T++ EN  K         
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPIST---IILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 442 ---KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG-----NLDVLELL 493
               ++DL  N++  +  +F  T    L  + + +N                   +    
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787

Query: 494 SLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR 553
             E N I           P+L  + +  N+I  +  +      +L IL+I+ N   S+  
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP---QLYILDIADNPNISIDV 844

Query: 554 DVFSNTI---IEKLDISYNQD 571
                 I   +  L     QD
Sbjct: 845 TSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  152 bits (385), Expect = 4e-39
 Identities = 75/472 (15%), Positives = 152/472 (32%), Gaps = 67/472 (14%)

Query: 138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRC 197
           L+ L+ L    +  T              +  ++ +                L    L  
Sbjct: 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 198 NKITDLNG------NLFRHLYNLQELSLSFN------------KLQIIELNSNVFDVFEK 239
           + I           +    L + Q  +L+              KLQII   ++ F     
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
               E + S +        +   NL  L  + + N          LY+L  L  +N+  N
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525

Query: 300 KISKIHNNLFH-------FNIHKRLKEIRLSNNYL-ELIESDTFYNLKELNTITLSYNLL 351
           +                  +   +++   +  N L E   S +   + +L  +   +N +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

Query: 352 KSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNIT 411
           + +   +F     + ++ L +NQI+ I  +       +  L    NKLK           
Sbjct: 586 RHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI--------- 634

Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD----SLR 467
               P   N  +  +  +             S+D S N+I     N   +  D    +  
Sbjct: 635 ----PNIFNAKS--VYVM------------GSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 468 KLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV-------VKRTFIGMPNLQIIDLS 520
            + L +NEI+      F     +  + L +N +  +           +     L  IDL 
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 521 FNEISMLTGEQFYFSFK-LRILNISHNRLRSLPRDVFSNTIIEKLDISYNQD 571
           FN+++ L+ +    +   L  +++S+N   S P    +++ ++   I + +D
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  118 bits (298), Expect = 4e-28
 Identities = 74/529 (13%), Positives = 166/529 (31%), Gaps = 89/529 (16%)

Query: 2   TLDLSHNKLSVL-NMATLYSNVTKLQHLGTTILKGD--QLQGIFNSKLRELEITGKDLKF 58
            L    +  +V   +         +       ++    ++   ++ +L   ++    +  
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

Query: 59  ---IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
              + P   D+  +  D  +     +I  +   +  ++  ++   +  +++  +  N+A 
Sbjct: 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ-RLTKLQ--IIYFANSPFTYDNIAV 467

Query: 116 LY------------------SNVTKLQHL------GTTILKDREKLLSNLETLLLRCNKI 151
            +                  SN+  L  +        T L D    L  L++L + CN+ 
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 152 TDLN--GNLFRHLQKSIVKAKK------NNNN-----NEDQVSDREKL------------ 186
                    +  L        K        NN         +    KL            
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

Query: 187 ------LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL 240
                    L  L L  N+I ++  +       ++ L  S NKL+ I  N         +
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVM 646

Query: 241 QLLEISFSLFNS--NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEY 298
             ++ S++   S        + +        + +  N I+          + ++ I L  
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 299 NKISKIHNNLFH-----FNIHKRLKEIRLSNNYL-ELIESDTFYNLKELNTITLSYNLLK 352
           N ++ I  N        +     L  I L  N L  L +      L  L+ + +SYN   
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 353 SI-----KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVF 407
           S       ++  K            N+I   +P      P+L++L +  N ++  +  + 
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT 826

Query: 408 SNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS--LDLSNNRIQEV 454
             +        L++++N   ++   D      YI++    L  ++ Q++
Sbjct: 827 PQLYI------LDIADNPNISI---DVTSVCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.7 bits (238), Expect = 1e-20
 Identities = 63/409 (15%), Positives = 124/409 (30%), Gaps = 51/409 (12%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
            ++L +          L   +  L  L +  +  ++       K     +          
Sbjct: 495 DVELYNCPNM----TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA--------- 541

Query: 62  SAFDNIDACYDLT-LKITNTQIEELP-SGLFDKIENIEQMTLDLSHNKLSVLNMATLYSN 119
              D+ D    +    +    +EE P S    K+  +    LD  HNK+  L     +  
Sbjct: 542 ---DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG--LLDCVHNKVRHLE---AFGT 593

Query: 120 VTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNN 173
             KL  L         I +D       +E L    NK+  +           +     + 
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653

Query: 174 NN-----NEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIE 228
           N           S  +    N  T+ L  N+I      LF     +  + LS N +  I 
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 229 LNS-----NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
            NS       +     L  +++ F+   S           L  L  + +  N   +    
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSYNCFSSFPT- 770

Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFH-----FNIHKRLKEIRLSNNYLELIESDTFYNL 338
              N + L    + + + ++  N +             L ++++ +N +  ++      L
Sbjct: 771 QPLNSSQLKAFGIRHQRDAE-GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL 829

Query: 339 KELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP 387
             L+   ++ N   SI  TS          VL +++ + I     + + 
Sbjct: 830 YILD---IADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.1 bits (213), Expect = 1e-17
 Identities = 37/273 (13%), Positives = 83/273 (30%), Gaps = 30/273 (10%)

Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
           R+  + L+    +    D    L EL  ++   +                       ++I
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 376 KYIYPNAFV-NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDK 434
           +  Y   F+     L   DL  + +          +   +    ++L +  I NL  N  
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNP-----EMKPIKKDSRISLKDTQIGNLT-NRI 437

Query: 435 KQAPIYI------KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLD 488
                 I      + +  +N+      +      A        D+ +    +  ++ NL 
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNI------AVDWEDANSDYAKQYENEELSWSNLK 491

Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF---------KLR 539
            L  + L +      +      +P LQ ++++ N        +  ++          K++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 540 ILNISHNRLRSLPRDV--FSNTIIEKLDISYNQ 570
           I  + +N L   P          +  LD  +N+
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  149 bits (379), Expect = 9e-40
 Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 38/264 (14%)

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
           ++  Y+NL  N I  I  + F       L+ ++L  N +  IE   F  L  LNT+ L  
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRH--LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVF 407
           N L  I + +F+ L+ +  + L  N I+ I   AF  +P+L++LDL +  KL+  +   F
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 408 SNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--S 465
             + +                            +K L+L    I+++P            
Sbjct: 193 EGLFN----------------------------LKYLNLGMCNIKDMP-----NLTPLVG 219

Query: 466 LRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
           L +L +  N    +   +F  L  L+ L + ++ ++++ +  F G+ +L  ++L+ N +S
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

Query: 526 MLTGEQFYFSFKLRILNISHNRLR 549
            L  + F     L  L++ HN   
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  140 bits (354), Expect = 3e-36
 Identities = 62/338 (18%), Positives = 125/338 (36%), Gaps = 94/338 (27%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
           +    ++     ++++   +     N + L+L  N   I  + ++ F             
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPS---NTRYLNLMEN--NIQMIQADTF------------- 95

Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
                         ++L+ LE L +  N+I+ I   +   L SLN + L  N ++ I   
Sbjct: 96  --------------RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-- 139

Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
                                   S  F  L +L  + L  N ++SI + +F  + +++ 
Sbjct: 140 ------------------------SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

Query: 368 IVLS-FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
           + L    +++YI   AF  L NL  L+L    +K  ++   + +                
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMPNLTPLVG-------------- 219

Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAF 484
                         ++ L++S N   E+      +F    SL+KL++  +++  ++  AF
Sbjct: 220 --------------LEELEMSGNHFPEIRPG---SFHGLSSLKKLWVMNSQVSLIERNAF 262

Query: 485 GNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
             L  L  L+L HNN++ +    F  +  L  + L  N
Sbjct: 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (255), Expect = 2e-23
 Identities = 63/349 (18%), Positives = 107/349 (30%), Gaps = 128/349 (36%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
            L+L  N + ++                            F   L  LE           
Sbjct: 79  YLNLMENNIQMIQ------------------------ADTF-RHLHHLE----------- 102

Query: 62  SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
                        L++    I ++  G F+ + ++   TL+L  N L+V+          
Sbjct: 103 ------------VLQLGRNSIRQIEVGAFNGLASLN--TLELFDNWLTVIPSGAFEY--- 145

Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS 181
                           LS L  L LR N I  +    F                      
Sbjct: 146 ----------------LSKLRELWLRNNPIESIPSYAFNR-------------------- 169

Query: 182 DREKLLSNLETL-LLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL 240
                + +L  L L    K+  ++   F  L+NL+ L+L    ++ +             
Sbjct: 170 -----VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP------------ 212

Query: 241 QLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNK 300
                + +               L  LE L M  N+   IR  S + L+SL  + +  ++
Sbjct: 213 -----NLT--------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
           +S I  N F       L E+ L++N L  +  D F  L+ L  + L +N
Sbjct: 254 VSLIERNAFDGL--ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.5 bits (230), Expect = 3e-20
 Identities = 53/268 (19%), Positives = 103/268 (38%), Gaps = 45/268 (16%)

Query: 39  QGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ 98
           QGI ++  R L +   +++ I    F ++     L L      I ++  G F+ + ++  
Sbjct: 71  QGIPSN-TRYLNLMENNIQMIQADTFRHLHHLEVLQL--GRNSIRQIEVGAFNGLASLN- 126

Query: 99  MTLDLSHNKLSVLNMATLYSNVTKLQHLG------TTILKDREKLLSNLETL-LLRCNKI 151
            TL+L  N L+V+        ++KL+ L        +I       + +L  L L    K+
Sbjct: 127 -TLELFDNWLTVIPSGAF-EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184

Query: 152 TDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHL 211
             ++   F  L    +K       N   + +   L   LE L +  N   ++    F  L
Sbjct: 185 EYISEGAFEGLFN--LKYLNLGMCNIKDMPNLTPL-VGLEELEMSGNHFPEIRPGSFHGL 241

Query: 212 YNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLA 271
            +L++L +  +++ +IE   N FD                            L +L  L 
Sbjct: 242 SSLKKLWVMNSQVSLIE--RNAFD---------------------------GLASLVELN 272

Query: 272 MDNNNIKNIRNYSLYNLTSLNYINLEYN 299
           + +NN+ ++ +     L  L  ++L +N
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.0 bits (226), Expect = 1e-19
 Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
             +  +   + EVP         + R L L  N I+ + A  F +L  LE+L L  N+I 
Sbjct: 57  SKVVCTRRGLSEVPQGIPS----NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI- 560
            +    F G+ +L  ++L  N ++++    F +  KLR L + +N + S+P   F+    
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 561 IEKLDIS-YNQ 570
           + +LD+    +
Sbjct: 173 LMRLDLGELKK 183

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  149 bits (377), Expect = 1e-39
 Identities = 62/264 (23%), Positives = 114/264 (43%), Gaps = 38/264 (14%)

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
           T+   +NL  N+I  I  N F     + L+ ++LS N++  IE   F  L  LNT+ L  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKH--LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVF 407
           N L +I   +F  L+ +  + L  N I+ I   AF  +P+L +LDL +  +L   +   F
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 408 SNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--S 465
             +++                            ++ L+L+   ++E+P            
Sbjct: 182 EGLSN----------------------------LRYLNLAMCNLREIP-----NLTPLIK 208

Query: 466 LRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
           L +L L  N +  +   +F  L  L+ L +  + I V+ +  F  + +L  I+L+ N ++
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 526 MLTGEQFYFSFKLRILNISHNRLR 549
           +L  + F     L  +++ HN   
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  141 bits (357), Expect = 9e-37
 Identities = 65/330 (19%), Positives = 121/330 (36%), Gaps = 83/330 (25%)

Query: 70  CYDLTLKI--TNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG 127
           C +   K+      + E+P G+           L+L  N++ ++ + +            
Sbjct: 41  CSNQFSKVICVRKNLREVPDGISTNTR-----LLNLHENQIQIIKVNSFKH--------- 86

Query: 128 TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLL 187
                     L +LE L L  N I  +    F  L                         
Sbjct: 87  ----------LRHLEILQLSRNHIRTIEIGAFNGL------------------------- 111

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
           +NL TL L  N++T +    F +L  L+EL L  N ++ I   S  F+    L+ L++  
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP--SYAFNRIPSLRRLDLG- 168

Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
                                    +   +  I   +   L++L Y+NL    + +I   
Sbjct: 169 -------------------------ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-- 201

Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
             +     +L E+ LS N+L  I   +F  L  L  + +  + ++ I+  +F NL +++ 
Sbjct: 202 --NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
           I L+ N +  +  + F  L +L ++ L  N
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  137 bits (348), Expect = 1e-35
 Identities = 70/335 (20%), Positives = 122/335 (36%), Gaps = 88/335 (26%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
           +    ++     + ++   +     N + L+L  N  QI  +  N F             
Sbjct: 43  NQFSKVICVRKNLREVPDGIST---NTRLLNLHEN--QIQIIKVNSF------------- 84

Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
                         K+L  LE L +  N+I+ I   +   L +LN + L  N+++ I N 
Sbjct: 85  --------------KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130

Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
            F +    +LKE+ L NN +E I S  F  +  L  + L                     
Sbjct: 131 AFVYL--SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG-------------------- 168

Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
                 ++ YI   AF  L NL  L+L    L+   +   + +                 
Sbjct: 169 ---ELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIK--------------- 208

Query: 428 NLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL 487
                        +  LDLS N +  +     Q     L+KL++  ++I+ ++  AF NL
Sbjct: 209 -------------LDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNAFDNL 254

Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
             L  ++L HNN+ ++    F  + +L+ I L  N
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 5e-19
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
             +      ++EVP         + R L L  N+I+ +   +F +L  LE+L L  N+I 
Sbjct: 46  SKVICVRKNLREVPDGIS----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI- 560
            +    F G+ NL  ++L  N ++ +    F +  KL+ L + +N + S+P   F+    
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 561 IEKLDIS-YNQ 570
           + +LD+    +
Sbjct: 162 LRRLDLGELKR 172

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 114/330 (34%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
            L+L  N++ ++ + +   ++  L+ L    L  + ++    G FN  + L  LE+    
Sbjct: 68  LLNLHENQIQIIKVNSF-KHLRHLEIL---QLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 56  LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
           L  I   AF  +            ++++E                L L +N +  +    
Sbjct: 124 LTTIPNGAFVYL------------SKLKE----------------LWLRNNPIESIPSYA 155

Query: 116 LYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNN 175
             + +  L+ L                  L    +++ ++   F                
Sbjct: 156 F-NRIPSLRRL-----------------DLGELKRLSYISEGAFEG-------------- 183

Query: 176 NEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD 235
                      LSNL  L L    + ++       L  L EL LS N L  I      F 
Sbjct: 184 -----------LSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIR--PGSF- 227

Query: 236 VFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYIN 295
                                     + L  L+ L M  + I+ I   +  NL SL  IN
Sbjct: 228 --------------------------QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 296 LEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
           L +N ++ + ++LF       L+ I L +N
Sbjct: 262 LAHNNLTLLPHDLFTPL--HHLERIHLHHN 289

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  145 bits (368), Expect = 3e-39
 Identities = 63/316 (19%), Positives = 119/316 (37%), Gaps = 50/316 (15%)

Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
               L + NN+I  +R      L  L  + L  NKISKIH   F     ++L+++ +S N
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL--RKLQKLYISKN 112

Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVN 385
           +L  I  +   +L EL                            +  N+I+ +    F  
Sbjct: 113 HLVEIPPNLPSSLVELR---------------------------IHDNRIRKVPKGVFSG 145

Query: 386 LPNLVKLDLQDNKLKDFNL--NVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
           L N+  +++  N L++       F  +        L +S   +T +     K  P  +  
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNY----LRISEAKLTGI----PKDLPETLNE 197

Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
           L L +N+IQ + +  L  +   L +L L  N+I+ ++  +   L  L  L L++N ++  
Sbjct: 198 LHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQF------YFSFKLRILNISHNRL--RSLPRDV 555
           V      +  LQ++ L  N I+ +    F              +++ +N +    +    
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 556 FSN-TIIEKLDISYNQ 570
           F   T    +     +
Sbjct: 316 FRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  141 bits (358), Expect = 7e-38
 Identities = 53/258 (20%), Positives = 106/258 (41%), Gaps = 11/258 (4%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
            I      + L NN +  +  D F  L+ L  + L  N +  I   +F  L  +  + +S
Sbjct: 51  EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE 431
            N +  I PN      +LV+L + DN+++     VFS + +      + +  N + N   
Sbjct: 111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNC---IEMGGNPLENSGF 164

Query: 432 NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE 491
                  + +  L +S  ++  +P +  +    +L +L+LD N+I+ ++         L 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPE----TLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
            L L HN I ++   +   +P L+ + L  N++S +          L+++ +  N +  +
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKV 279

Query: 552 PRDVFSNTIIEKLDISYN 569
             + F           YN
Sbjct: 280 GVNDFCPVGFGVKRAYYN 297

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  138 bits (351), Expect = 8e-37
 Identities = 50/255 (19%), Positives = 103/255 (40%), Gaps = 15/255 (5%)

Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
           L+ ++ S+  L+ +  +   +   L+   L  N +  ++   FK L ++  +VL  N+I 
Sbjct: 35  LRVVQCSDLGLKAVPKEISPDTTLLD---LQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
            I+  AF  L  L KL +  N L +   N+ S++        L + +N I  + +     
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVE------LRIHDNRIRKVPKGVFSG 145

Query: 437 APIYIKSLDLSNNRIQEVPVNFLQTFAD-SLRKLYLDFNEIKHLDATAFGNLDVLELLSL 495
               +  +++  N ++         F    L  L +   ++  +       L     L L
Sbjct: 146 LR-NMNCIEMGGNPLENSGFE-PGAFDGLKLNYLRISEAKLTGIPKDLPETL---NELHL 200

Query: 496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV 555
           +HN I  +     +    L  + L  N+I M+      F   LR L++ +N+L  +P  +
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260

Query: 556 FSNTIIEKLDISYNQ 570
               +++ + +  N 
Sbjct: 261 PDLKLLQVVYLHTNN 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  137 bits (347), Expect = 3e-36
 Identities = 68/345 (19%), Positives = 114/345 (33%), Gaps = 78/345 (22%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
            +   L L+ N I++L  + F+ L +L  L L  NK+  I      F             
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH--EKAFS------------ 99

Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
                           L  L+ L +  N++  I      +L  L    +  N+I K+   
Sbjct: 100 ---------------PLRKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKG 141

Query: 308 LFHFNIHKRLKEIRLSNNYLEL--IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
           +F     + +  I +  N LE    E   F  LK LN + +S   L  I     + LN +
Sbjct: 142 VFS--GLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNEL 198

Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425
               L  N+I+ I     +    L +L L  N+++       S + +             
Sbjct: 199 ---HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT------------- 242

Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG 485
                          ++ L L NN++  VP          L+ +YL  N I  +    F 
Sbjct: 243 ---------------LRELHLDNNKLSRVPAGLPDL--KLLQVVYLHTNNITKVGVNDFC 285

Query: 486 NLDV------LELLSLEHNNIAV--VVKRTFIGMPNLQIIDLSFN 522
            +           +SL +N +    V   TF  + +   I     
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  133 bits (338), Expect = 5e-35
 Identities = 64/321 (19%), Positives = 115/321 (35%), Gaps = 52/321 (16%)

Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCN 198
            +   L L+ N I++L  + F+                          L +L  L+L  N
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKG-------------------------LQHLYALVLVNN 88

Query: 199 KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS---FSLFNSNEF 255
           KI+ ++   F  L  LQ+L +S N L  I  N     +   L  L I            F
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHLVEIPPN-----LPSSLVELRIHDNRIRKVPKGVF 143

Query: 256 PYYILNKNLNTLEWLAMDNNNIKN--IRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI 313
                   L  +  + M  N ++N      +   L  LNY+ +   K++ I  +L     
Sbjct: 144 ------SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---- 192

Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
            + L E+ L +N ++ IE +      +L  + L +N ++ I+  S   L  +  + L  N
Sbjct: 193 -ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 374 QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN---LSNNYITNLY 430
           ++  + P    +L  L  + L  N +    +N F  +         N   L NN +    
Sbjct: 252 KLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

Query: 431 ENDKKQAPIY-IKSLDLSNNR 450
                   +    ++   N +
Sbjct: 311 VQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 2e-24
 Identities = 59/356 (16%), Positives = 103/356 (28%), Gaps = 91/356 (25%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
            LDL +N +S L            + L                 L  L +    +  I  
Sbjct: 58  LLDLQNNDISELRKDDF-------KGL---------------QHLYALVLVNNKISKIHE 95

Query: 62  SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
            AF  +     L +  +   + E+P  L   +       L +  N++  +          
Sbjct: 96  KAFSPLRKLQKLYI--SKNHLVEIPPNLPSSLVE-----LRIHDNRIRKVPKGVFSG--- 145

Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITD--LNGNLFRHLQKSIVKAKKNNNNNEDQ 179
                           L N+  + +  N + +       F  L+ + ++    +      
Sbjct: 146 ----------------LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI---SEAKLTG 186

Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEK 239
           +     L   L  L L  NKI  +          L  L L  N++++IE  +        
Sbjct: 187 IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLS---- 238

Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
                                   L TL  L +DNN +  +    L +L  L  + L  N
Sbjct: 239 -----------------------FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTN 274

Query: 300 KISKIHNNLF----HFNIHKRLKEIRLSNNYLEL--IESDTFYNLKELNTITLSYN 349
            I+K+  N F              I L NN +    ++  TF  + +   I     
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 39/232 (16%)

Query: 3   LDLSHNKLSVLNMATLYSNVTKLQ--HLGTTILKGDQLQ-GIFNS-KLRELEITGKDLKF 58
           L +  N++  +      S +  +    +G   L+    + G F+  KL  L I+   L  
Sbjct: 128 LRIHDNRIRKVPKGVF-SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186

Query: 59  IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
           I     + ++      L + + +I+ +      +   +    L L HN++ ++   +L S
Sbjct: 187 IPKDLPETLN-----ELHLDHNKIQAIELEDLLRYSKLY--RLGLGHNQIRMIENGSL-S 238

Query: 119 NVTKLQHL-----GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNN 173
            +  L+ L       + +      L  L+ + L  N IT +  N F  +   +       
Sbjct: 239 FLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV------- 291

Query: 174 NNNEDQVSDREKLLSNLETLLLRCNKIT--DLNGNLFRHLYNLQELSLSFNK 223
                         +    + L  N +   ++    FR + +   +     K
Sbjct: 292 ------------KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  143 bits (362), Expect = 2e-38
 Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 16/256 (6%)

Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
           L+ ++ S+  LE +  D   +   L+   L  N +  IK   FKNL N+  ++L  N+I 
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
            I P AF  L  L +L L  N+LK+    +   +        L +  N IT + ++    
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE------LRVHENEITKVRKSVFNG 143

Query: 437 APIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDVLELLS 494
               +  ++L  N ++   +     F     L  + +    I  +      +L     L 
Sbjct: 144 LN-QMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELH 198

Query: 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554
           L+ N I  V   +  G+ NL  + LSFN IS +       +  LR L++++N+L  +P  
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258

Query: 555 VFSNTIIEKLDISYNQ 570
           +  +  I+ + +  N 
Sbjct: 259 LADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  142 bits (361), Expect = 3e-38
 Identities = 72/337 (21%), Positives = 136/337 (40%), Gaps = 45/337 (13%)

Query: 70  CYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTT 129
           C+   ++ ++  +E++P  L           LDL +NK++ +      +           
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTA-----LLDLQNNKITEIKDGDFKN----------- 74

Query: 130 ILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSN 189
                   L NL TL+L  NKI+ ++   F  L K  ++    + N   ++   EK+   
Sbjct: 75  --------LKNLHTLILINNKISKISPGAFAPLVK--LERLYLSKNQLKELP--EKMPKT 122

Query: 190 LETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSL 249
           L+ L +  N+IT +  ++F  L  +  + L  N L+   + +  F   +KL  + I+ + 
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 250 FNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLF 309
             +      I      +L  L +D N I  +   SL  L +L  + L +N IS + N   
Sbjct: 183 ITT------IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 310 HFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSF------KNLN 363
                  L+E+ L+NN L  +      + K +  + L  N + +I +  F          
Sbjct: 237 AN--TPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 364 NMLNIVLSFNQIKY--IYPNAFVNLPNLVKLDLQDNK 398
           +   + L  N ++Y  I P+ F  +     + L + K
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  140 bits (355), Expect = 2e-37
 Identities = 69/322 (21%), Positives = 122/322 (37%), Gaps = 51/322 (15%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L  +   L L+ NKIT++    F++L NL  L L  NK+  I      F           
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFA---------- 97

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
                             L  LE L +  N +K +       L  L    +  N+I+K+ 
Sbjct: 98  -----------------PLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVR 137

Query: 306 NNLFHFNIHKRLKEIRLSNNYLEL--IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN 363
            ++F  N   ++  + L  N L+   IE+  F  +K+L+ I ++   + +I      +L 
Sbjct: 138 KSVF--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195

Query: 364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
               + L  N+I  +   +   L NL KL L  N +   +    +N    +    L+L+N
Sbjct: 196 E---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE---LHLNN 249

Query: 424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD-----SLRKLYLDFNEIKH 478
           N +  +          YI+ + L NN I  +  N            S   + L  N +++
Sbjct: 250 NKLVKVPGGLADHK--YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 479 --LDATAFGNLDVLELLSLEHN 498
             +  + F  + V   + L + 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  140 bits (354), Expect = 2e-37
 Identities = 56/267 (20%), Positives = 114/267 (42%), Gaps = 19/267 (7%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
           ++      + L NN +  I+   F NLK L+T+ L  N +  I   +F  L  +  + LS
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY- 430
            NQ+K +          L +L + +N++     +VF+ +        + L  N + +   
Sbjct: 109 KNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIV---VELGTNPLKSSGI 162

Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL 490
           EN   Q    +  + +++  I  +P         SL +L+LD N+I  +DA +   L+ L
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNL 218

Query: 491 ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
             L L  N+I+ V   +    P+L+ + L+ N++  + G        ++++ + +N + +
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISA 277

Query: 551 LPRDVFSNTII-------EKLDISYNQ 570
           +  + F              + +  N 
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 57/356 (16%), Positives = 106/356 (29%), Gaps = 114/356 (32%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN--SKLRELEITGKDLKFI 59
           TL L +NK+S ++                         G F    KL  L ++   LK +
Sbjct: 80  TLILINNKISKIS------------------------PGAFAPLVKLERLYLSKNQLKEL 115

Query: 60  DPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSN 119
                  +       L++   +I ++   +F+ +  +    ++L  N L           
Sbjct: 116 PEKMPKTLQ-----ELRVHENEITKVRKSVFNGLNQMI--VVELGTNPLKSS-------- 160

Query: 120 VTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ 179
                 +     +     +  L  + +    IT +   L                     
Sbjct: 161 -----GIENGAFQG----MKKLSYIRIADTNITTIPQGLP-------------------- 191

Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEK 239
                    +L  L L  NKIT ++    + L NL +L LSFN +  ++  +        
Sbjct: 192 --------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD--NGSLA---- 237

Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
                                  N   L  L ++NN +  +    L +   +  + L  N
Sbjct: 238 -----------------------NTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNN 273

Query: 300 KISKIHNNLFH----FNIHKRLKEIRLSNNYLEL--IESDTFYNLKELNTITLSYN 349
            IS I +N F              + L +N ++   I+  TF  +     + L   
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 70/225 (31%)

Query: 1   MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFID 60
             + ++   ++ +                                L EL + G  +  +D
Sbjct: 174 SYIRIADTNITTIPQGLP-------------------------PSLTELHLDGNKITKVD 208

Query: 61  PSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
            ++   ++    L L  +   I  + +G      ++    L L++NKL  +         
Sbjct: 209 AASLKGLNNLAKLGL--SFNSISAVDNGSLANTPHLR--ELHLNNNKLVKVPGGL----- 259

Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV 180
                               ++ + L  N I+ +  N F     +               
Sbjct: 260 ---------------ADHKYIQVVYLHNNNISAIGSNDFCPPGYN--------------- 289

Query: 181 SDREKLLSNLETLLLRCNKI--TDLNGNLFRHLYNLQELSLSFNK 223
                  ++   + L  N +   ++  + FR +Y    + L   K
Sbjct: 290 ----TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  146 bits (370), Expect = 1e-37
 Identities = 70/455 (15%), Positives = 154/455 (33%), Gaps = 59/455 (12%)

Query: 138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETL-LLR 196
           L+ L    +  +     N       + S                 +   L +L  + +  
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENENS------EYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
           C  +T L   L   L  +Q ++++ N+                +   ++        + P
Sbjct: 259 CPNLTKLPTFLKA-LPEMQLINVACNRG---------------ISGEQLKDDWQALADAP 302

Query: 257 YYILNKNLNTLEWLAMDNNNIKNIR-NYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK 315
                     ++ + +  NN+K      SL  +  L  +   YN++              
Sbjct: 303 ------VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE---I 353

Query: 316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI-KTTSFKNLNNMLNIVLSFNQ 374
           +L  + L+ N +  I ++     +++  ++ ++N LK I      K+++ M  I  S+N+
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

Query: 375 IKYIYPNAFVNLP-------NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
           I  +    F  L        N+  ++L +N++  F   +FS  +   +   +NL  N +T
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS---INLMGNMLT 470

Query: 428 NLYENDKKQAPIYI------KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA 481
            + +N  K             S+DL  N++ ++  +F  T    L  + L +N       
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530

Query: 482 TAFG-----NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536
                       +      + N             P+L  + +  N+I  +  +    + 
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITP 587

Query: 537 KLRILNISHNRLRSLPRDVFSNTII-EKLDISYNQ 570
            + +L+I  N   S+        I      + Y++
Sbjct: 588 NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  137 bits (347), Expect = 2e-34
 Identities = 70/488 (14%), Positives = 155/488 (31%), Gaps = 64/488 (13%)

Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLF 159
            L L  +   V         ++                      +  +   +       F
Sbjct: 109 VLALGSHGEKVNERLFGPKGISANMSD----------EQKQKMRMHYQKTFVDYDPREDF 158

Query: 160 RHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSL 219
             L K  +    N++  +  +    ++      +    N IT ++  + R L  L++  +
Sbjct: 159 SDLIKDCI----NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYM 213

Query: 220 SFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN 279
             +      +  N+ + +E               ++       NL  L  + + N     
Sbjct: 214 GNSPF----VAENICEAWENENSEYAQQYKTEDLKW------DNLKDLTDVEVYNCPNLT 263

Query: 280 IRNYSLYNLTSLNYINLEYNKISKI------HNNLFHFNIHKRLKEIRLSNNYL-ELIES 332
                L  L  +  IN+  N+             L    + ++++ I +  N L      
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL 392
            +   +K+L  +   YN L+     +F +   + ++ L++NQI  I  N       +  L
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGK-LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382

Query: 393 DLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI 451
               NKLK   N+    +++       ++ S N I ++   +                  
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSA---IDFSYNEIGSVDGKNFDPLDPTPFKGI------ 433

Query: 452 QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGM 511
                        ++  + L  N+I       F     L  ++L  N +  + K +    
Sbjct: 434 -------------NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 512 P-------NLQIIDLSFNEISMLTGEQFYFSF-KLRILNISHNRLRSLPRDVFSNTIIEK 563
                    L  IDL FN+++ L+ +    +   L  +++S+N     P    +++ ++ 
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540

Query: 564 LDISYNQD 571
             I   +D
Sbjct: 541 FGIRNQRD 548

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  129 bits (325), Expect = 1e-31
 Identities = 54/399 (13%), Positives = 133/399 (33%), Gaps = 25/399 (6%)

Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
              +  L L     +    +    L  L+ L+L  +  ++ E       +   +   +  
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 247 FSLFN-SNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
               +    F  Y   ++ + L    ++++  +     S         I    N I+ + 
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
             +       +L++  + N+          +  +                   + NL ++
Sbjct: 200 KAVMRL---TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-----DLKWDNLKDL 251

Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-----NLNVFSNITSKQTPMNLN 420
            ++ +         P     LP +  +++  N+         +    ++    +    + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLD 480
           +  N +         Q    +  L+   N+++     F       L  L L +N+I  + 
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS--EIKLASLNLAYNQITEIP 369

Query: 481 ATAFGNLDVLELLSLEHNNIAVVVKRTFIG-MPNLQIIDLSFNEISMLTGEQFYF----- 534
           A   G  + +E LS  HN +  +        +  +  ID S+NEI  + G+ F       
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 535 --SFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
                +  +N+S+N++   P+++FS  + +  +++  N 
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.0 bits (247), Expect = 6e-22
 Identities = 44/337 (13%), Positives = 119/337 (35%), Gaps = 31/337 (9%)

Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
           +   +  L+++          ++  LT L  + L  +             I   + + + 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 323 SNNYLEL----IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI 378
               +      ++ D   +  +L    ++ +  +     S +       I    N I ++
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 379 YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL--------- 429
              A + L  L +  + ++     N+       + +        +    NL         
Sbjct: 199 -SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 430 YENDKKQAPIYI------KSLDLSNNRIQEVPVNFLQ-------TFADSLRKLYLDFNEI 476
              +  + P ++      + ++++ NR                    + ++ +Y+ +N +
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

Query: 477 KHLDA-TAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS 535
           K     T+   +  L +L   +N +   +   F     L  ++L++N+I+ +      F+
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFT 376

Query: 536 FKLRILNISHNRLRSLPRDVF--SNTIIEKLDISYNQ 570
            ++  L+ +HN+L+ +P      S +++  +D SYN+
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 59/398 (14%), Positives = 124/398 (31%), Gaps = 83/398 (20%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNS--KLRELEITGKDLKFI 59
            + + +N L    + T    + KL  L       +QL+G   +     +L          
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLE---CLYNQLEGKLPAFGSEIKLA--------- 356

Query: 60  DPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSN 119
                         +L +   QI E+P+      E +E   L  +HNKL  +       +
Sbjct: 357 --------------SLNLAYNQITEIPANFCGFTEQVE--NLSFAHNKLKYIPNIFDAKS 400

Query: 120 VTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ 179
                             +S +  +    N+I  ++G  F  L  +  K           
Sbjct: 401 ------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK----------- 431

Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELN-----SNVF 234
                    N+ ++ L  N+I+     LF     L  ++L  N L  I  N     +  F
Sbjct: 432 -------GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
                L  +++ F+               L  L  + +  N+          N ++L   
Sbjct: 485 KNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGF 541

Query: 295 NLEYNKISKIHNNLFH-----FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
            +   + ++  N           +   L ++++ +N +  +      N+  L+   +  N
Sbjct: 542 GIRNQRDAQ-GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLD---IKDN 597

Query: 350 LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP 387
              SI  +           +L +++ + I     +++ 
Sbjct: 598 PNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  141 bits (356), Expect = 2e-37
 Identities = 57/314 (18%), Positives = 114/314 (36%), Gaps = 51/314 (16%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L   +++L L  N+IT ++ +  +   NLQ L L+ N +  IE   + F           
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE--EDSFS---------- 97

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
                            +L +LE L +  N + N+ +     L+SL ++NL  N    + 
Sbjct: 98  -----------------SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
                 ++ K       + +    I+   F  L  L  + +  + L+S +  S K++ N+
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425
            +++L   Q   +         ++  L+L+D  L  F+ +  S   +          N  
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN-- 258

Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG 485
                             + +++  + +V     Q     L +L    N++K +    F 
Sbjct: 259 ------------------VKITDESLFQVMKLLNQI--SGLLELEFSRNQLKSVPDGIFD 298

Query: 486 NLDVLELLSLEHNN 499
            L  L+ + L  N 
Sbjct: 299 RLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  128 bits (323), Expect = 7e-33
 Identities = 53/292 (18%), Positives = 102/292 (34%), Gaps = 26/292 (8%)

Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
            ++ L + NN I  I N  L    +L  + L  N I+ I  + F       L+ + LS N
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL--GSLEHLDLSYN 110

Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTS-FKNLNNMLNIVLSFN-QIKYIYPNAF 383
           YL  + S  F  L  L  + L  N  K++  TS F +L  +  + +        I    F
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
             L  L +L++  + L+ +      +I +      L L       L E         ++ 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSH---LILHMKQHILLLEIFVDVTS-SVEC 226

Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
           L+L +  +                     F+E+   +  +         + +   ++  V
Sbjct: 227 LELRDTDLDTFH-----------------FSELSTGETNSLIKKFTFRNVKITDESLFQV 269

Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV 555
           +K     +  L  ++ S N++  +    F     L+ + +  N        +
Sbjct: 270 MK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  125 bits (316), Expect = 7e-32
 Identities = 52/268 (19%), Positives = 110/268 (41%), Gaps = 15/268 (5%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
            + + +K + LSNN +  I +        L  + L+ N + +I+  SF +L ++ ++ LS
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYITNLY 430
           +N +  +  + F  L +L  L+L  N  K     ++FS++T  Q     N   +  T + 
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN--MDTFTKIQ 166

Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL 490
             D      +++ L++  + +Q      L++   ++  L L   +   L          +
Sbjct: 167 RKDFAGLT-FLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 491 ELLSLEHNNIA--------VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
           E L L   ++              + I     + + ++   +  +       S  L  L 
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS-GLLELE 283

Query: 543 ISHNRLRSLPRDVFSN-TIIEKLDISYN 569
            S N+L+S+P  +F   T ++K+ +  N
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  121 bits (306), Expect = 1e-30
 Identities = 58/332 (17%), Positives = 126/332 (37%), Gaps = 67/332 (20%)

Query: 78  TNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL 137
           ++  +  +PSGL + ++     +LDLS+N+++ ++ + L                     
Sbjct: 39  SSGSLNSIPSGLTEAVK-----SLDLSNNRITYISNSDLQR------------------- 74

Query: 138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRC 197
             NL+ L+L  N I  +  + F  L                          +LE L L  
Sbjct: 75  CVNLQALVLTSNGINTIEEDSFSSL-------------------------GSLEHLDLSY 109

Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSN--EF 255
           N +++L+ + F+ L +L  L+L  N  + +   S    +F  L  L+I          + 
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS----LFSHLTKLQILRVGNMDTFTKI 165

Query: 256 PYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK 315
                   L  LE L +D +++++    SL ++ +++++ L   +   +           
Sbjct: 166 QRKDF-AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT--S 222

Query: 316 RLKEIRLSNNYLEL--------IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
            ++ + L +  L+          E+++         + ++   L  +       ++ +L 
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLE 281

Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
           +  S NQ+K +    F  L +L K+ L  N  
Sbjct: 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  121 bits (305), Expect = 2e-30
 Identities = 51/258 (19%), Positives = 105/258 (40%), Gaps = 16/258 (6%)

Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
            S+  L  I S     +K L+   LS N +  I  +  +   N+  +VL+ N I  I  +
Sbjct: 38  GSSGSLNSIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
           +F +L +L  LDL  N L + + + F  ++S      LNL  N    L E         +
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF---LNLLGNPYKTLGETSLFSHLTKL 151

Query: 442 KSLDLSNN-RIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
           + L + N     ++           L +L +D ++++  +  +  ++  +  L L     
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 501 AVVVKRTFIGMPNLQIIDLS--------FNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
            ++++       +++ ++L         F+E+S          F  R + I+   L  + 
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270

Query: 553 RDVFSNTIIEKLDISYNQ 570
           + +   + + +L+ S NQ
Sbjct: 271 KLLNQISGLLELEFSRNQ 288

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.9 bits (244), Expect = 2e-22
 Identities = 56/348 (16%), Positives = 112/348 (32%), Gaps = 92/348 (26%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
           +LDLS+N+++ ++ + L       Q                   L+ L +T   +  I+ 
Sbjct: 56  SLDLSNNRITYISNSDL-------QRC---------------VNLQALVLTSNGINTIEE 93

Query: 62  SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
            +F ++ +   L L      +  L S  F  + ++    L+L  N    L   +L+S++T
Sbjct: 94  DSFSSLGSLEHLDLS--YNYLSNLSSSWFKPLSSLTF--LNLLGNPYKTLGETSLFSHLT 149

Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS 181
           KLQ L                  +   +  T +    F                      
Sbjct: 150 KLQILR-----------------VGNMDTFTKIQRKDFAG-------------------- 172

Query: 182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
                L+ LE L +  + +        + + N+  L L   +  ++       DV   ++
Sbjct: 173 -----LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSSVE 225

Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKI 301
            LE+  +  ++  F                   + +      SL    +   + +    +
Sbjct: 226 CLELRDTDLDTFHF-------------------SELSTGETNSLIKKFTFRNVKITDESL 266

Query: 302 SKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
            ++   L   +    L E+  S N L+ +    F  L  L  I L  N
Sbjct: 267 FQVMKLLNQIS---GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 27/243 (11%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
            L L+ N ++ +   +  S++  L+HL    L  + L       F   S L  L + G  
Sbjct: 80  ALVLTSNGINTIEEDSF-SSLGSLEHLD---LSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 56  LKFIDP-SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
            K +   S F ++     L +        ++    F  +  +E   L++  + L      
Sbjct: 136 YKTLGETSLFSHLTKLQILRVG-NMDTFTKIQRKDFAGLTFLE--ELEIDASDLQSYEPK 192

Query: 115 TLYSNVTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDLNGN-----LFRHLQ 163
           +L  ++  + HL         +L+    + S++E L LR   +   + +         L 
Sbjct: 193 SL-KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 164 KSIVKAKKNNNNNE-DQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFN 222
           K          +    QV      +S L  L    N++  +   +F  L +LQ++ L  N
Sbjct: 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

Query: 223 KLQ 225
              
Sbjct: 312 PWD 314

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  138 bits (350), Expect = 5e-37
 Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 14/243 (5%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           + S+   L L  NK+  L   +F  L  L +LSLS N L      S        L+ L++
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 246 SFSLFNS--NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSL-YNLTSLNYINLEYNKIS 302
           SF+   +  + F        L  LE L   ++N+K +  +S+  +L +L Y+++ +    
Sbjct: 86  SFNGVITMSSNF------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 303 KIHNNLFHFNIHKRLKEIRLS-NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKN 361
              N +F+      L+ ++++ N++ E    D F  L+ L  + LS   L+ +  T+F +
Sbjct: 140 VAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 362 LNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL 421
           L+++  + +S N    +    +  L +L  LD   N +         +  S      LNL
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA--FLNL 255

Query: 422 SNN 424
           + N
Sbjct: 256 TQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  128 bits (325), Expect = 1e-33
 Identities = 46/258 (17%), Positives = 98/258 (37%), Gaps = 13/258 (5%)

Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
            EIR ++  L  + +    +   L    L  N L+S+    F  L  +  + LS N + +
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 378 IY--PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKK 435
                 +     +L  LDL  N +   + + F  +   +    L+  ++ +  + E    
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEH---LDFQHSNLKQMSEFSVF 122

Query: 436 QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN-EIKHLDATAFGNLDVLELLS 494
            +   +  LD+S+   +            SL  L +  N   ++     F  L  L  L 
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554
           L    +  +    F  + +LQ++++S N    L    +     L++L+ S N + +  + 
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

Query: 555 VFSN--TIIEKLDISYNQ 570
              +  + +  L+++ N 
Sbjct: 242 ELQHFPSSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 54/272 (19%), Positives = 97/272 (35%), Gaps = 42/272 (15%)

Query: 39  QGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ 98
            GI +S    LE+    L+ +    FD +     L+L       +   S       +++ 
Sbjct: 24  TGIPSS-ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK- 81

Query: 99  MTLDLSHNKLSVLNMATLYSNVTKLQHLG------TTILKDRE-KLLSNLETLLLRCNKI 151
             LDLS N +  ++    +  + +L+HL         + +      L NL  L +     
Sbjct: 82  -YLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 152 TDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHL 211
                 +F  L    V     N+  E+ + D    L NL  L L   ++  L+   F  L
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 212 YNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLA 271
            +LQ L++S N    ++  +  +                             LN+L+ L 
Sbjct: 199 SSLQVLNMSHNNFFSLD--TFPYK---------------------------CLNSLQVLD 229

Query: 272 MDNNNIKNIRNYSLYNL-TSLNYINLEYNKIS 302
              N+I   +   L +  +SL ++NL  N  +
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  131 bits (331), Expect = 1e-34
 Identities = 52/239 (21%), Positives = 106/239 (44%), Gaps = 33/239 (13%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           + +  + + L  N+I+ +    FR   NL  L L  N L  I+  +  F     L+ L++
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID--AAAFTGLALLEQLDL 87

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
           S                          DN  ++++   + + L  L+ ++L+   + ++ 
Sbjct: 88  S--------------------------DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
             LF       L+ + L +N L+ +  DTF +L  L  + L  N + S+   +F+ L+++
Sbjct: 122 PGLFRG--LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
             ++L  N++ +++P+AF +L  L+ L L  N L        + + + Q    L L++N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY---LRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  128 bits (325), Expect = 1e-33
 Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 34/238 (14%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
            I    + I L  N +  + + +F   + L  + L  N+L  I   +F  L  +  + LS
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 372 FN-QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
            N Q++ + P  F  L  L  L L    L++    +F  + +                  
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA------------------ 130

Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLD 488
                     ++ L L +N +Q +P +   TF D  +L  L+L  N I  +   AF  L 
Sbjct: 131 ----------LQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
            L+ L L  N +A V    F  +  L  + L  N +S L  E       L+ L ++ N
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  126 bits (319), Expect = 6e-33
 Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 38/260 (14%)

Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
           ++           L+ +        + +    L  N +  +   SF+   N+  + L  N
Sbjct: 10  NEPKVTTSCPQQGLQAVPVGIPAASQRIF---LHGNRISHVPAASFRACRNLTILWLHSN 66

Query: 374 QIKYIYPNAFVNLPNLVKLDLQDN-KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEN 432
            +  I   AF  L  L +LDL DN +L+  +   F  +                      
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR-------------------- 106

Query: 433 DKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDVL 490
                   + +L L    +QE+       F    +L+ LYL  N ++ L    F +L  L
Sbjct: 107 --------LHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 491 ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
             L L  N I+ V +R F G+ +L  + L  N ++ +    F    +L  L +  N L +
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 551 LPRDVFSN-TIIEKLDISYN 569
           LP +  +    ++ L ++ N
Sbjct: 216 LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  125 bits (317), Expect = 1e-32
 Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 55/261 (21%)

Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
           + +  + + L  N+I+ +    FR                            NL  L L 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRA-------------------------CRNLTILWLH 64

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
            N +  ++   F  L  L++L LS N  Q+  ++   F                      
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDN-AQLRSVDPATFH--------------------- 102

Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316
                  L  L  L +D   ++ +       L +L Y+ L+ N +  + ++ F       
Sbjct: 103 ------GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL--GN 154

Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
           L  + L  N +  +    F  L  L+ + L  N +  +   +F++L  ++ + L  N + 
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 377 YIYPNAFVNLPNLVKLDLQDN 397
            +   A   L  L  L L DN
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  122 bits (309), Expect = 1e-31
 Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN-KISKIHNNLFHFNIHKRLKEI 320
           +    L  L + +N +  I   +   L  L  ++L  N ++  +    FH     RL  +
Sbjct: 53  RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL--GRLHTL 110

Query: 321 RLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP 380
            L    L+ +    F  L  L  + L  N L+++   +F++L N+ ++ L  N+I  +  
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170

Query: 381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
            AF  L +L +L L  N++   + + F ++    T   L L  N ++ L           
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT---LYLFANNLSALPTEALAPLR-A 226

Query: 441 IKSLDLSNN 449
           ++ L L++N
Sbjct: 227 LQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  115 bits (290), Expect = 7e-29
 Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 33/204 (16%)

Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
           L  N+I ++   +F    NL  L L  N L   +   F+ +   +    L+LS+N     
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ---LDLSDN----- 90

Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNL 487
                               +++ V      TF     L  L+LD   ++ L    F  L
Sbjct: 91  -------------------AQLRSVDPA---TFHGLGRLHTLHLDRCGLQELGPGLFRGL 128

Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNR 547
             L+ L L+ N +  +   TF  + NL  + L  N IS +    F     L  L +  NR
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 548 LRSLPRDVFSN-TIIEKLDISYNQ 570
           +  +    F +   +  L +  N 
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.1 bits (245), Expect = 6e-23
 Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 10/181 (5%)

Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI 451
                  L+   + + +          + L  N I+++     +     +  L L +N +
Sbjct: 16  TSCPQQGLQAVPVGIPAASQR------IFLHGNRISHVPAASFRACR-NLTILWLHSNVL 68

Query: 452 QEVPVNFLQTFADSLRKLYLDFNE-IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG 510
             +        A  L +L L  N  ++ +D   F  L  L  L L+   +  +    F G
Sbjct: 69  ARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 511 MPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYN 569
           +  LQ + L  N +  L  + F     L  L +  NR+ S+P   F     +++L +  N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 570 Q 570
           +
Sbjct: 188 R 188

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.9 bits (234), Expect = 1e-21
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 72/262 (27%)

Query: 74  TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKD 133
            + +   +I  +P+  F    N+    L L  N L+ ++ A   + +  L+ L    L D
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLT--ILWLHSNVLARIDAAAF-TGLALLEQL---DLSD 89

Query: 134 REKL----------LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDR 183
             +L          L  L TL L    + +L   LFR L                     
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--------------------- 128

Query: 184 EKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLL 243
               + L+ L L+ N +  L  + FR L NL  L L  N++  +      F         
Sbjct: 129 ----AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--ERAFR-------- 174

Query: 244 EISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK 303
                               L++L+ L +  N + ++  ++  +L  L  + L  N +S 
Sbjct: 175 -------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 304 IHNNLFHFNIHKRLKEIRLSNN 325
           +          + L+ +RL++N
Sbjct: 216 LPTEALAPL--RALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 55/298 (18%), Positives = 89/298 (29%), Gaps = 98/298 (32%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
            + L  N++S +  A+        +                   L  L +    L  ID 
Sbjct: 36  RIFLHGNRISHVPAASF-------RAC---------------RNLTILWLHSNVLARIDA 73

Query: 62  SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
           +AF  +     L L   N Q+  +    F  +  +   TL L    L  L          
Sbjct: 74  AAFTGLALLEQLDLS-DNAQLRSVDPATFHGLGRLH--TLHLDRCGLQELGPGLFRG--- 127

Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS 181
                           L+ L+ L L+ N +  L  + FR                     
Sbjct: 128 ----------------LAALQYLYLQDNALQALPDDTFRD-------------------- 151

Query: 182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
                L NL  L L  N+I+ +    FR L++L  L L  N++  +    + F       
Sbjct: 152 -----LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--PHAFR------ 198

Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
                                +L  L  L +  NN+  +   +L  L +L Y+ L  N
Sbjct: 199 ---------------------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  133 bits (337), Expect = 7e-34
 Identities = 66/398 (16%), Positives = 142/398 (35%), Gaps = 35/398 (8%)

Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEK 239
           + + ++  +  +   +  + +     +L +  +N++EL LS N L  I   +     F K
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS--AADLAPFTK 59

Query: 240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
           L+LL +S     SN     +  ++L+TL  L ++NN ++      L    S+  ++   N
Sbjct: 60  LELLNLS-----SNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN 109

Query: 300 KISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TS 358
            IS++  +       +  K I L+NN + ++          +  + L  N + ++     
Sbjct: 110 NISRVSCSRG-----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 359 FKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN 418
             + + + ++ L +N I  +          L  LDL  NKL       F +         
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTW--- 218

Query: 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478
           ++L NN +  + +  +      ++  DL  N      +     F+ + R   +    +K 
Sbjct: 219 ISLRNNKLVLIEKALRF--SQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKK 274

Query: 479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNL-----QIIDLSFNEISMLTGEQFY 533
           L         V  L          +       +  L      ++    +E   L  E+  
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334

Query: 534 FSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
            + + R ++    + R++   V         L+     
Sbjct: 335 QA-RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.1 bits (239), Expect = 3e-21
 Identities = 70/499 (14%), Positives = 153/499 (30%), Gaps = 68/499 (13%)

Query: 43  NSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLD 102
            ++ +  ++T   LK    S   +     +L L  +   + ++ +        +E   L+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDL--SGNPLSQISAADLAPFTKLEL--LN 64

Query: 103 LSHNKLSVL-------NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLN 155
           LS N L           + TL  N   +Q L             ++ETL    N I+ ++
Sbjct: 65  LSSNVLYETLDLESLSTLRTLDLNNNYVQELLV---------GPSIETLHAANNNISRVS 115

Query: 156 GNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN-GNLFRHLYNL 214
            +  +  +   +     NN         E   S ++ L L+ N+I  +N   L      L
Sbjct: 116 CSRGQGKKNIYL----ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 215 QELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNS--NEFPYYILNKNLNTLEWLAM 272
           + L+L +N +  ++        F KL+ L++S +       EF      ++   + W+++
Sbjct: 172 EHLNLQYNFIYDVKGQVV----FAKLKTLDLSSNKLAFMGPEF------QSAAGVTWISL 221

Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHK----------------- 315
            NN +  I   +L    +L + +L  N         F     +                 
Sbjct: 222 RNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 316 ----RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFK----NLNNMLN 367
                           E + +     L  L     +    +  +T   +    N      
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
           I     Q + +     +     + L+ +   L +   N           +   +    + 
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ 400

Query: 428 NLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL 487
           +  E         ++ L     R +E+ V       +++R   +  ++   L        
Sbjct: 401 HATEEQSP-----LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLK 455

Query: 488 DVLELLSLEHNNIAVVVKR 506
            +     L   +    ++ 
Sbjct: 456 KLNGEADLALASANATLQE 474

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  128 bits (323), Expect = 4e-33
 Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 18/240 (7%)

Query: 332 SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVK 391
            +   N        ++ + LK    +  ++  N+  + LS N +  I          L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI 451
           L+L  N L +       ++++ +T   L+L+NNY+  L           I++L  +NN I
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRT---LDLNNNYVQEL------LVGPSIETLHAANNNI 111

Query: 452 QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG- 510
             V  +  Q      + +YL  N+I  L     G    ++ L L+ N I  V        
Sbjct: 112 SRVSCSRGQ----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 511 MPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
              L+ ++L +N I  + G+      KL+ L++S N+L  +  +  S   +  + +  N+
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  124 bits (314), Expect = 6e-32
 Identities = 57/375 (15%), Positives = 118/375 (31%), Gaps = 76/375 (20%)

Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
            +  +   +  + +     +L +  +N++EL LS N L  I                   
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS------------------ 50

Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
                + +            LE L + +N +       L +L++L  ++L  N + ++  
Sbjct: 51  -----AADL------APFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLV 97

Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
                     ++ +  +NN +  +        K +    L+ N +  ++       + + 
Sbjct: 98  G-------PSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147

Query: 367 NIVLSFNQIKYIYPNAFV-NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425
            + L  N+I  +       +   L  L+LQ N + D    V                   
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV------------------ 189

Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG 485
              L            K+LDLS+N++  +   F       +  + L  N++  ++  A  
Sbjct: 190 FAKL------------KTLDLSSNKLAFMGPEFQSA--AGVTWISLRNNKLVLIEK-ALR 234

Query: 486 NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISH 545
               LE   L  N       R F    N ++  ++   +  LTG+         + +   
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 546 NRLRSLPRDVFSNTI 560
                LP       I
Sbjct: 294 YCCEDLPAPFADRLI 308

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (312), Expect = 1e-31
 Identities = 57/290 (19%), Positives = 106/290 (36%), Gaps = 20/290 (6%)

Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITL 346
           N        +  + + +   +L        +KE+ LS N L  I +       +L  + L
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSA--WNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNV 406
           S N+L        ++L+ +  + L+ N ++ +        P++  L   +N +   + + 
Sbjct: 66  SSNVLYET--LDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSR 118

Query: 407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
                      N+ L+NN IT L + D+      ++ LDL  N I  V    L   +D+L
Sbjct: 119 GQGKK------NIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 467 RKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM 526
             L L +N I  +          L+ L L  N +A +    F     +  I L  N++ +
Sbjct: 172 EHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL 228

Query: 527 LTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPG 576
           +      FS  L   ++  N         F +       ++    K   G
Sbjct: 229 IEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (274), Expect = 1e-26
 Identities = 54/385 (14%), Positives = 121/385 (31%), Gaps = 77/385 (20%)

Query: 131 LKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNL 190
           + + ++  +  +   +  + +     +L +                            N+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSA-------------------------WNV 36

Query: 191 ETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLF 250
           + L L  N ++ ++         L+ L+LS N L                + L++     
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---------------ETLDLE---- 77

Query: 251 NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH 310
                       +L+TL  L ++NN ++      L    S+  ++   N IS++  +   
Sbjct: 78  ------------SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRG- 119

Query: 311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI-KTTSFKNLNNMLNIV 369
               +  K I L+NN + ++          +  + L  N + ++       + + + ++ 
Sbjct: 120 ----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
           L +N I  +          L  LDL  NKL       F +         ++L NN +  +
Sbjct: 176 LQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTW---ISLRNNKLVLI 229

Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDV 489
            +  +      ++  DL  N      +     F+ + R   +    +K L         V
Sbjct: 230 EKALRF--SQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 490 LELLSLEHNNIAVVVKRTFIGMPNL 514
             L          +       +  L
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (259), Expect = 2e-24
 Identities = 51/351 (14%), Positives = 116/351 (33%), Gaps = 56/351 (15%)

Query: 116 LYSNVTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKA 169
           +  N  + +            L    +   N++ L L  N ++ ++              
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-------- 56

Query: 170 KKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIEL 229
                             + LE L L  N + +        L  L+ L L+ N +Q + +
Sbjct: 57  -----------------FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV 97

Query: 230 NSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLT 289
             +       ++ L  + +  +       +        + + + NN I  +R+      +
Sbjct: 98  GPS-------IETLHAANNNISR------VSCSRGQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 290 SLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
            + Y++L+ N+I  ++           L+ + L  N++  ++        +L T+ LS N
Sbjct: 145 RVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN 201

Query: 350 LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
            L  +    F++   +  I L  N++  I   A     NL   DL+ N      L  F  
Sbjct: 202 KLAFM-GPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDF-- 257

Query: 410 ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQ 460
               +      ++   +  L   ++++  +            +++P  F  
Sbjct: 258 --FSKNQRVQTVAKQTVKKLTGQNEEECTV-PTLGHYGAYCCEDLPAPFAD 305

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 3e-19
 Identities = 55/391 (14%), Positives = 116/391 (29%), Gaps = 93/391 (23%)

Query: 44  SKLRELEITGKDLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLD 102
           ++ +  ++T   LK    S   +    +++  L ++   + ++ +        +E   L+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQS---AWNVKELDLSGNPLSQISAADLAPFTKLE--LLN 64

Query: 103 LSHNKLSVL-------NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLN 155
           LS N L           + TL  N   +Q L             ++ETL    N I+ ++
Sbjct: 65  LSSNVLYETLDLESLSTLRTLDLNNNYVQELLV---------GPSIETLHAANNNISRVS 115

Query: 156 GNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQ 215
            +  +                              + + L  NKIT L          +Q
Sbjct: 116 CSRGQ----------------------------GKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 216 ELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNN 275
            L L  N++  +                                L  + +TLE L +  N
Sbjct: 148 YLDLKLNEIDTVNFAE----------------------------LAASSDTLEHLNLQYN 179

Query: 276 NIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTF 335
            I +++         L  ++L  NK++ +            +  I L NN L LI     
Sbjct: 180 FIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSA---AGVTWISLRNNKLVLI-EKAL 233

Query: 336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ 395
              + L    L  N               + +      +++ +       L    + +  
Sbjct: 234 RFSQNLEHFDLRGNGFHCG---------TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
              L  +      ++ +      + L +++ 
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  125 bits (317), Expect = 1e-32
 Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 13/215 (6%)

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
            S   ++L +N +  + +  F       L+ + LS   ++ IE   + +L  L+T+ L+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPE--LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNL-NVF 407
           N ++S+   +F  L+++  +V     +  +      +L  L +L++  N ++ F L   F
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 408 SNITSKQTPMNLNLSNNYITNLYEND---KKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD 464
           SN+T+ +    L+LS+N I ++Y  D     Q P+   SLDLS N +  +       F +
Sbjct: 146 SNLTNLEH---LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKE 199

Query: 465 -SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498
             L++L LD N++K +    F  L  L+ + L  N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  113 bits (286), Expect = 2e-28
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 7/214 (3%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
           N+    K + LS N L  + S +F++  EL  + LS   +++I+  ++++L+++  ++L+
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE 431
            N I+ +   AF  L +L KL   +  L         ++ + +    LN+++N I +   
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE---LNVAHNLIQSFKL 141

Query: 432 NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFA---DSLRKLYLDFNEIKHLDATAFGNLD 488
            +       ++ LDLS+N+IQ +    L+           L L  N +  +   AF  + 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
            L+ L+L+ N +  V    F  + +LQ I L  N
Sbjct: 202 -LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  107 bits (269), Expect = 3e-26
 Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 38/208 (18%)

Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
           LSFN ++++   +F + P L  LDL   +++      + +++                  
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH----------------- 77

Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNL 487
                      + +L L+ N IQ + +     F+   SL+KL      +  L+    G+L
Sbjct: 78  -----------LSTLILTGNPIQSLALG---AFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 488 DVLELLSLEHNNIAVV-VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRI----LN 542
             L+ L++ HN I    +   F  + NL+ +DLS N+I  +         ++ +    L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 543 ISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
           +S N +  +    F    +++L +  NQ
Sbjct: 184 LSLNPMNFIQPGAFKEIRLKELALDTNQ 211

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  105 bits (265), Expect = 1e-25
 Identities = 50/263 (19%), Positives = 94/263 (35%), Gaps = 60/263 (22%)

Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCN 198
            + + L L  N +  L    F                              L+ L L   
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSF-------------------------PELQVLDLSRC 62

Query: 199 KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY 258
           +I  +    ++ L +L  L L+ N +Q   L    F                        
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFS----------------------- 97

Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLK 318
                L++L+ L     N+ ++ N+ + +L +L  +N+ +N I        +F+    L+
Sbjct: 98  ----GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLE 152

Query: 319 EIRLSNNYLELIESDTFYNLKELNTIT----LSYNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
            + LS+N ++ I       L ++  +     LS N +  I+  +FK +  +  + L  NQ
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQ 211

Query: 375 IKYIYPNAFVNLPNLVKLDLQDN 397
           +K +    F  L +L K+ L  N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  104 bits (261), Expect = 4e-25
 Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 30/227 (13%)

Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
           LS+N L+ + + SF +   +  + LS  +I+ I   A+ +L +L  L L  N ++   L 
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 406 VFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD- 464
            FS ++S Q    L      + +L EN        +K L++++N IQ   +   + F++ 
Sbjct: 95  AFSGLSSLQK---LVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNL 148

Query: 465 -SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNE 523
            +L  L L  N+I+ +  T    L  + LL+L                     +DLS N 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS--------------------LDLSLNP 188

Query: 524 ISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYN 569
           ++ +    F    +L+ L +  N+L+S+P  +F   T ++K+ +  N
Sbjct: 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P   K+LDLS N ++ +      +F   L+ L L   EI+ ++  A+ +L  L  L L  
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR-DVF 556
           N I  +    F G+ +LQ +      ++ L          L+ LN++HN ++S    + F
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 557 SN-TIIEKLDISYNQ 570
           SN T +E LD+S N+
Sbjct: 146 SNLTNLEHLDLSSNK 160

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 51/229 (22%), Positives = 90/229 (39%), Gaps = 36/229 (15%)

Query: 3   LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKDL 56
           LDLS N L  L  +  + +  +LQ L    L   ++Q    G +   S L  L +TG  +
Sbjct: 33  LDLSFNPLRHLG-SYSFFSFPELQVLD---LSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 57  KFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
           + +   AF        L  L    T +  L +     ++ +++  L+++HN +    +  
Sbjct: 89  QSLALGAFSG---LSSLQKLVAVETNLASLENFPIGHLKTLKE--LNVAHNLIQSFKLPE 143

Query: 116 LYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN--N 173
            +SN                  L+NLE L L  NKI  +     R L +  +       +
Sbjct: 144 YFSN------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 174 NNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFN 222
            N  + +         L+ L L  N++  +   +F  L +LQ++ L  N
Sbjct: 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
            +         ++P N       S + L L FN ++HL + +F +   L++L L    I 
Sbjct: 10  ITYQCMELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TI 560
            +    +  + +L  + L+ N I  L    F     L+ L      L SL      +   
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 561 IEKLDISYNQ 570
           +++L++++N 
Sbjct: 126 LKELNVAHNL 135

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 20/116 (17%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNSKLRELEITGKDL- 56
            L+++HN +    +   +SN+T L+HL    L  +++Q          L ++ +    L 
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKIQSIYCTDL-RVLHQMPLLNLSLD 183

Query: 57  ------KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHN 106
                  FI P AF  I       L +   Q++ +P G+FD++ +++   + L  N
Sbjct: 184 LSLNPMNFIQPGAFKEIRL---KELALDTNQLKSVPDGIFDRLTSLQ--KIWLHTN 234

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  130 bits (329), Expect = 1e-32
 Identities = 84/488 (17%), Positives = 174/488 (35%), Gaps = 39/488 (7%)

Query: 44  SKLRELEITGKDLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLD 102
            K   L I+   +  +  S   ++     L  L I++ +I+ L   +F   + +E   LD
Sbjct: 21  QKTTILNISQNYISELWTSDILSLS---KLRILIISHNRIQYLDISVFKFNQELE--YLD 75

Query: 103 LSHNKLSVL------NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNG 156
           LSHNKL  +      N+  L  +      L           +S L+ L L    +   + 
Sbjct: 76  LSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGN---MSQLKFLGLSTTHLEKSSV 132

Query: 157 NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQE 216
               HL  S V         E +  +    L +  T  L     T+   +    +     
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPE---GLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 217 LSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNN 276
            +L  + ++ +  ++        L  L+ +  L N           +   +    +    
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI----LQLVW 245

Query: 277 IKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFY 336
              +  +S+ N+       L++        +L      K L   ++ ++     +S  + 
Sbjct: 246 HTTVWYFSISNVKLQG--QLDFRDFDYSGTSL------KALSIHQVVSDVFGFPQSYIYE 297

Query: 337 NLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD 396
               +N    + +  + +       ++  L++  S N +         +L  L  L LQ 
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 397 NKLKDFNL--NVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV 454
           N+LK+ +    + + + S Q    L++S N ++   +         + SL++S+N + + 
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQ---LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 455 PVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNL 514
                +     ++ L L  N+IK +       L+ L+ L++  N +  V    F  + +L
Sbjct: 415 I---FRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSL 470

Query: 515 QIIDLSFN 522
           Q I L  N
Sbjct: 471 QKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (294), Expect = 4e-28
 Identities = 83/512 (16%), Positives = 172/512 (33%), Gaps = 71/512 (13%)

Query: 72  DLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTIL 131
           +  +  +   +  +P  L  K        L++S N +S L  + + S             
Sbjct: 2   EFLVDRSKNGLIHVPKDLSQKTT-----ILNISQNYISELWTSDILS------------- 43

Query: 132 KDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLE 191
                 LS L  L++  N+I  L+ ++F+  Q                          LE
Sbjct: 44  ------LSKLRILIISHNRIQYLDISVFKFNQ-------------------------ELE 72

Query: 192 TLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN 251
            L L  NK+  ++        NL+ L LSFN    + +    F    +L+ L +S +   
Sbjct: 73  YLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLE 128

Query: 252 SNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHF 311
            +      +     +   L +     +      L +  + +   +               
Sbjct: 129 KSSV--LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIV-L 370
                L+   +     +   S     L +L T     NL  +   T++ +   +L +V  
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN--ITSKQTPMNLNLSNNYITN 428
           +      I         +    D     LK  +++   +      Q+ +    SN  I N
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 429 LYENDKKQAPI-------YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA 481
              +  +   +           LD SNN + +            L  L L  N++K L  
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSK 365

Query: 482 TA--FGNLDVLELLSLEHNNI-AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKL 538
            A     +  L+ L +  N++     K       +L  +++S N ++           ++
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRI 423

Query: 539 RILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
           ++L++  N+++S+P+ V     +++L+++ NQ
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEALQELNVASNQ 455

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
                 L++S N I E+  + + + +  LR L +  N I++LD + F     LE L L H
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLT-GEQFYFSFKLRILNISHNRLRSLPRDVF 556
           N +  +   +     NL+ +DLSFN    L   ++F    +L+ L +S   L        
Sbjct: 79  NKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 557 SNTIIEKLDISYNQDKIRP 575
           ++  I K+ +   +     
Sbjct: 136 AHLNISKVLLVLGETYGEK 154

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 46/247 (18%), Positives = 92/247 (37%), Gaps = 32/247 (12%)

Query: 12  VLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPSAFDNIDACY 71
           V +    Y +++ ++  G    +     G     L   ++      F     ++      
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 72  DLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHL--GTT 129
                ++ T++  +      KI       LD S+N L+   +     ++T+L+ L     
Sbjct: 304 IKNFTVSGTRM--VHMLCPSKISPFL--HLDFSNNLLTDT-VFENCGHLTELETLILQMN 358

Query: 130 ILKDREKL------LSNLETLLLRCNKIT-DLNGNLFRHLQKSIVKAKKNNNNNEDQVSD 182
            LK+  K+      + +L+ L +  N ++ D          KS++    ++N   D +  
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-KSLLSLNMSSNILTDTIFR 417

Query: 183 REKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFN--------------KLQIIE 228
              L   ++ L L  NKI  +   +   L  LQEL+++ N               LQ I 
Sbjct: 418 --CLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474

Query: 229 LNSNVFD 235
           L++N +D
Sbjct: 475 LHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 30/130 (23%)

Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV 502
            +D S N +  VP +     +     L +  N I  L  +   +L               
Sbjct: 4   LVDRSKNGLIHVPKDL----SQKTTILNISQNYISELWTSDILSL--------------- 44

Query: 503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIE 562
                      L+I+ +S N I  L    F F+ +L  L++SHN+L  +      N  ++
Sbjct: 45  ---------SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVN--LK 93

Query: 563 KLDISYNQDK 572
            LD+S+N   
Sbjct: 94  HLDLSFNAFD 103

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  129 bits (326), Expect = 4e-32
 Identities = 81/457 (17%), Positives = 160/457 (35%), Gaps = 31/457 (6%)

Query: 59  IDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVL------ 111
           +            +L  L++++ +I  L   +F   +++E   LD+SHN+L  +      
Sbjct: 67  LRMPDISF---LSELRVLRLSHNRIRSLDFHVFLFNQDLEY--LDVSHNRLQNISCCPMA 121

Query: 112 NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKK 171
           ++  L  +      L           L+ L  L L   K   L+     HL  S +    
Sbjct: 122 SLRHLDLSFNDFDVLPVCKEFGN---LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178

Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNS 231
            + + +   ++  ++  N   L L  +  +  +  +   +  L  L LS  KL       
Sbjct: 179 VSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 232 NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
            +  + E  +   +        E  +    K         ++  NI N+      +    
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 292 NYIN--LEYNKISKIHNNLFH------FNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
            Y    L+   I  + N +F       +++   +    LS +    I      +      
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357

Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
           +  + N+           L  +  ++L  N +K       +   N+  L+  D  L   N
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLN 416

Query: 404 LNVFSNITSKQTPM-NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
            + +    +    +  LNLS+N +T       +  P  +K LDL NNRI  +P +     
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMSIPKDVTH-- 471

Query: 463 ADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNN 499
             +L++L +  N++K +    F  L  L+ + L  N 
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  118 bits (297), Expect = 2e-28
 Identities = 83/477 (17%), Positives = 160/477 (33%), Gaps = 55/477 (11%)

Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLF 159
            L LS N +S L M  +                     LS L  L L  N+I  L+ ++F
Sbjct: 56  ALSLSQNSISELRMPDISF-------------------LSELRVLRLSHNRIRSLDFHVF 96

Query: 160 RHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDL-NGNLFRHLYNLQELS 218
              Q   ++    ++N    +S     +++L  L L  N    L     F +L  L  L 
Sbjct: 97  LFNQD--LEYLDVSHNRLQNISCCP--MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152

Query: 219 LSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN---SNEFPYYILNKNLNTLEWLAMDNN 275
           LS  K +              L L  I   L +          +   N   L  +   N+
Sbjct: 153 LSAAKFR-----QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207

Query: 276 NIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTF 335
                 N S+  L  L   N++ N  +      F   + +    + ++  ++E     + 
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267

Query: 336 YNLKELNTITLSYN------LLKSIKTTSFKNLNNMLNIV----LSFNQIKYIYPNAFVN 385
              +      + Y       + + I    F      L  +    +      +     +  
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327

Query: 386 LPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLD 445
              +    L  +     ++    + +S      LN + N  T+            +++L 
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTF---LNFTQNVFTDSVFQGCSTLK-RLQTLI 383

Query: 446 LSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL----DVLELLSLEHNNIA 501
           L  N ++      L T   ++  L      +  L++ A+       + + +L+L  N + 
Sbjct: 384 LQRNGLKNFFKVALMT--KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
             V R     P ++++DL  N I  +  +  +    L+ LN++ N+L+S+P  VF  
Sbjct: 442 GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQ-ALQELNVASNQLKSVPDGVFDR 495

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (256), Expect = 3e-23
 Identities = 59/401 (14%), Positives = 132/401 (32%), Gaps = 27/401 (6%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L    + L L  N I++L       L  L+ L LS N+++   L+ +VF   + L+ L++
Sbjct: 50  LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLDV 107

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKI 304
           S +   +      I    + +L  L +  N+   +     + NLT L ++ L   K  ++
Sbjct: 108 SHNRLQN------ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

Query: 305 HNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN 364
                  ++H     + L + +++  E+++         + L ++           ++N 
Sbjct: 162 DLLPVA-HLHLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSK--QTPMNLNLS 422
           + ++ LS  ++        +   + +        +   ++      + K  Q      + 
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 423 NNYITNL-YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS-------LRKLYLDFN 474
              I NL       +         L +  I+ V         ++       +    L  +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 475 EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYF 534
           +   +      +      L+   N     V +    +  LQ + L  N +          
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-VALM 398

Query: 535 SFKLRILNISHNRLRSLPRDVFSN-----TIIEKLDISYNQ 570
           +  +  L      L SL    +         I  L++S N 
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 52/271 (19%), Positives = 103/271 (38%), Gaps = 18/271 (6%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
           ++  R K + LS N +  +       L EL  + LS+N ++S+    F    ++  + +S
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN-VFSNITSKQTPMNLNLSNNYITNLY 430
            N+++ I   +   + +L  LDL  N      +   F N+T       L LS      L 
Sbjct: 109 HNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF---LGLSAAKFRQLD 162

Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA-TAFGNLDV 489
                   +    LDL +  I+      LQ    ++  L    N +  +    +   L  
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 490 LELLSLEHNNIAVVVKRTFIG-------MPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
           L+L +++ N+       TF+        + N+ +  +       +   QF++   +  LN
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 543 ISHNRLRSLPRD---VFSNTIIEKLDISYNQ 570
           I +  +          +S T ++ L I + +
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVK 313

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 8e-10
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P   K+L LS N I E+ +  +   +  LR L L  N I+ LD   F     LE L + H
Sbjct: 51  PPRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLT-GEQFYFSFKLRILNISHNRLRSLPRDVF 556
           N +  +   +   M +L+ +DLSFN+  +L   ++F    KL  L +S  + R L     
Sbjct: 110 NRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 557 SNTIIEKLDISYNQDKIRPG 576
           ++  +  + +      I+ G
Sbjct: 167 AHLHLSCILLDLVSYHIKGG 186

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 30/129 (23%)

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
             +D SN  +  VP +         + L L  N I  L       L              
Sbjct: 34  SMVDYSNRNLTHVPKDLP----PRTKALSLSQNSISELRMPDISFL-------------- 75

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTII 561
                       L+++ LS N I  L    F F+  L  L++SHNRL+++     ++  +
Sbjct: 76  ----------SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMAS--L 123

Query: 562 EKLDISYNQ 570
             LD+S+N 
Sbjct: 124 RHLDLSFND 132

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  121 bits (306), Expect = 1e-30
 Identities = 59/256 (23%), Positives = 102/256 (39%), Gaps = 15/256 (5%)

Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI-K 376
           +      + +  I SD   N  EL         L+ I+  +F    ++  I +S N + +
Sbjct: 12  RVFLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 377 YIYPNAFVNLPNLVKLDLQD-NKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKK 435
            I  + F NLP L ++ ++  N L   N   F N+ + Q    L +SN  I +L +  K 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY---LLISNTGIKHLPDVHKI 125

Query: 436 QAPIYIKSLDLS-NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLS 494
            +      LD+  N  I  +  N     +     L+L+ N I+ +  +AF    + EL  
Sbjct: 126 HSLQ-KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184

Query: 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554
            ++NN+  +    F G     I+D+S   I  L         KLR  +     L+ LP  
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP-- 240

Query: 555 VFSN-TIIEKLDISYN 569
                  + +  ++Y 
Sbjct: 241 TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  119 bits (300), Expect = 9e-30
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 20/245 (8%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK-LQIIELNSNVFDVFEKLQLLE 244
           L  N   L     K+  +    F    +L+++ +S N  L++IE  ++VF    KL  + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE--ADVFSNLPKLHEIR 85

Query: 245 ISFSLFNSN---EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN-K 300
           I      +N           +NL  L++L + N  IK++ +    +      ++++ N  
Sbjct: 86  IE----KANNLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFK 360
           I  I  N F   +      + L+ N ++ I +  F   +         N L+ +    F 
Sbjct: 141 IHTIERNSFV-GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 361 NLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN 420
             +  + + +S  +I  +      NL  L      + K     L     + +       +
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALME---AS 252

Query: 421 LSNNY 425
           L+   
Sbjct: 253 LTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 49/305 (16%), Positives = 87/305 (28%), Gaps = 89/305 (29%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHL------GTTILKGDQLQGIFNSKLRELEIT-GK 54
            L     KL V+      S    L+ +         +++ D    +   KL E+ I    
Sbjct: 34  ELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFSNL--PKLHEIRIEKAN 90

Query: 55  DLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
           +L +I+P AF N+     L +  +NT I+ LP              LD+  N        
Sbjct: 91  NLLYINPEAFQNLPNLQYLLI--SNTGIKHLPDVHKIHSLQKV--LLDIQDN-------- 138

Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
                   +  +          L      L L  N I +++ + F               
Sbjct: 139 ------INIHTIERNSF---VGLSFESVILWLNKNGIQEIHNSAFN-------------- 175

Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVF 234
                           E  L   N + +L  ++F        L +S  ++  +   S   
Sbjct: 176 -----------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP--SYGL 222

Query: 235 DVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYI 294
           +  +KL+                                  N+K +   +L  L +L   
Sbjct: 223 ENLKKLRAR-----------------------------STYNLKKLP--TLEKLVALMEA 251

Query: 295 NLEYN 299
           +L Y 
Sbjct: 252 SLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.6 bits (178), Expect = 6e-14
 Identities = 49/313 (15%), Positives = 93/313 (29%), Gaps = 84/313 (26%)

Query: 39  QGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ 98
             +  +   EL      L+ I   AF        + +   N  +E + + +F  +  +  
Sbjct: 26  SDLPRN-AIELRFVLTKLRVIQKGAFSGFGDLEKIEIS-QNDVLEVIEADVFSNLPKLH- 82

Query: 99  MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNL 158
             + +                   L ++     ++    L NL+ LL+    I  L    
Sbjct: 83  -EIRIEKAN--------------NLLYINPEAFQN----LPNLQYLLISNTGIKHLPDVH 123

Query: 159 FRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCN-KITDLNGNLFRHL-YNLQE 216
             H                               L ++ N  I  +  N F  L +    
Sbjct: 124 KIH-------------------------SLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 217 LSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNN 276
           L L+ N +Q I         F   QL E++                          DNNN
Sbjct: 159 LWLNKNGIQEIH-----NSAFNGTQLDELNL------------------------SDNNN 189

Query: 277 IKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFY 336
           ++ + N   +  +    +++   +I  + +          LK++R  + Y  L +  T  
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLE-----NLKKLRARSTY-NLKKLPTLE 243

Query: 337 NLKELNTITLSYN 349
            L  L   +L+Y 
Sbjct: 244 KLVALMEASLTYP 256

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (300), Expect = 1e-29
 Identities = 78/364 (21%), Positives = 153/364 (42%), Gaps = 39/364 (10%)

Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
           L+     +L+   +TD+       L ++ +L ++  K+  I+      +    L+ L ++
Sbjct: 21  LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQ----GIEYLTNLEYLNLN 74

Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
                 N+        NL  L  L +  N I +I   +L NLT+L  + L  + IS I  
Sbjct: 75  -----GNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDISP 127

Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
                    ++  + L  N+  L +     N+  LN +T++ + +K +  T   NL ++ 
Sbjct: 128 ----LANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLY 180

Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
           ++ L++NQI+ I  +   +L +L       N++ D  +   +N+T   +   L + NN I
Sbjct: 181 SLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNS---LKIGNNKI 233

Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVP-VNFLQTFADSLRKLYLDFNEIKHLDATAFG 485
           T+L           +  L++  N+I ++  V  L      L+ L +  N+I  +      
Sbjct: 234 TDLSPLANLSQ---LTWLEIGTNQISDINAVKDLT----KLKMLNVGSNQISDISV--LN 284

Query: 486 NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISH 545
           NL  L  L L +N +         G+ NL  + LS N I+ +         K+   + ++
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342

Query: 546 NRLR 549
             ++
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (276), Expect = 1e-26
 Identities = 67/359 (18%), Positives = 142/359 (39%), Gaps = 40/359 (11%)

Query: 214 LQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMD 273
              L+     +  I  +++      +     +             +  + L ++  L + 
Sbjct: 2   AATLATLPAPINQIFPDAD----LAEGIRAVL-----QKASVTDVVTQEELESITKLVVA 52

Query: 274 NNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESD 333
              + +I+   +  LT+L Y+NL  N+I+ I       +   +L  + +  N +  I + 
Sbjct: 53  GEKVASIQG--IEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITDISA- 105

Query: 334 TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD 393
              NL  L  + L+ + +  I      NL  M ++ L  N       +   N+  L  L 
Sbjct: 106 -LQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLT 161

Query: 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQE 453
           + ++K+KD  +   +N+T   +   L+L+ N I ++       +   +       N+I +
Sbjct: 162 VTESKVKD--VTPIANLTDLYS---LSLNYNQIEDISPLASLTS---LHYFTAYVNQITD 213

Query: 454 V-PVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMP 512
           + PV  +      L  L +  N+I  L      NL  L  L +  N I+ +       + 
Sbjct: 214 ITPVANMT----RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT 265

Query: 513 NLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDISYNQ 570
            L+++++  N+IS ++        +L  L +++N+L +   +V    T +  L +S N 
Sbjct: 266 KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (267), Expect = 3e-25
 Identities = 84/384 (21%), Positives = 158/384 (41%), Gaps = 44/384 (11%)

Query: 74  TLKITNTQIEELPSGLFDKIENIEQMT-LDLSHNKLSVLNMATLYSNVTKLQHLGTTILK 132
           TL      I ++         ++ +     L    ++ +       ++TKL  +    + 
Sbjct: 4   TLATLPAPINQIFP-----DADLAEGIRAVLQKASVTDVVTQEELESITKL-VVAGEKVA 57

Query: 133 DREKL--LSNLETLLLRCNKITDLNG-NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSN 189
             + +  L+NLE L L  N+ITD++  +    L             N+       + L+N
Sbjct: 58  SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNL------YIGTNKITDISALQNLTN 111

Query: 190 LETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSL 249
           L  L L  + I+D++     +L  +  L+L  N    +   S + +    L  L ++   
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGAN--HNLSDLSPLSN-MTGLNYLTVT--- 163

Query: 250 FNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLF 309
              ++        NL  L  L+++ N I++I    L +LTSL+Y     N+I+ I     
Sbjct: 164 --ESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--- 216

Query: 310 HFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIV 369
                 RL  +++ NN +  +      NL +L  + +  N +  I   + K+L  +  + 
Sbjct: 217 -VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLN 271

Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
           +  NQI  I  +   NL  L  L L +N+L + ++ V   +T+  T   L LS N+IT++
Sbjct: 272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT---LFLSQNHITDI 326

Query: 430 YENDKKQAPIYIKSLDLSNNRIQE 453
                      + S D +N  I++
Sbjct: 327 RPLASLSK---MDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.8 bits (216), Expect = 9e-19
 Identities = 75/379 (19%), Positives = 142/379 (37%), Gaps = 60/379 (15%)

Query: 1   MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFID 60
           +   L    ++ +       ++TKL   G  +     ++ +  + L  L + G  +  I 
Sbjct: 25  IRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYL--TNLEYLNLNGNQITDIS 82

Query: 61  PSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSN 119
           P     +     LT L I   +I ++ +     + N+    L L+ + +S ++     + 
Sbjct: 83  P-----LSNLVKLTNLYIGTNKITDISA--LQNLTNLR--ELYLNEDNISDISPLANLTK 133

Query: 120 VTKLQHLGTTILKDREKL--LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNE 177
           +  L       L D   L  ++ L  L +  +K+ D+                       
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPI-------------------- 173

Query: 178 DQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVF 237
                    L++L +L L  N+I D++      L +L   +   N++  I          
Sbjct: 174 -------ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT----PVANM 220

Query: 238 EKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE 297
            +L  L+I      +N+        NL+ L WL +  N I +I   ++ +LT L  +N+ 
Sbjct: 221 TRLNSLKIG-----NNKITDLSPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVG 273

Query: 298 YNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTT 357
            N+IS I       N   +L  + L+NN L   + +    L  L T+ LS N +  I   
Sbjct: 274 SNQISDISV----LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--R 327

Query: 358 SFKNLNNMLNIVLSFNQIK 376
              +L+ M +   +   IK
Sbjct: 328 PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 7e-10
 Identities = 58/312 (18%), Positives = 127/312 (40%), Gaps = 44/312 (14%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN----SKLRELEITGKDLK 57
            L+L+ N+++ +      S ++ L  L    +  +++  I      + LREL +   ++ 
Sbjct: 70  YLNLNGNQITDI------SPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS 123

Query: 58  FIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATL 116
            I P     +     +  L +         S L   +  +    L ++ +K+  +     
Sbjct: 124 DISP-----LANLTKMYSLNLGANHNLSDLSPLS-NMTGLN--YLTVTESKVKDVTPIAN 175

Query: 117 YSNVTKLQHLGTTILKDREKL--LSNLETLLLRCNKITDLNGNLFRHLQK-SIVKAKKNN 173
            +++  L  L    ++D   L  L++L       N+ITD+      ++ + + +K   N 
Sbjct: 176 LTDLYSL-SLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232

Query: 174 NNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV 233
             +   +++    LS L  L +  N+I+D+N    + L  L+ L++  N++  I     V
Sbjct: 233 ITDLSPLAN----LSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS----V 282

Query: 234 FDVFEKLQLLEISFSLFNSNEFPYYILN--KNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
            +   +L  L ++     +N+     +     L  L  L +  N+I +IR   L +L+ +
Sbjct: 283 LNNLSQLNSLFLN-----NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 292 NYINLEYNKISK 303
           +  +     I K
Sbjct: 336 DSADFANQVIKK 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (295), Expect = 3e-28
 Identities = 102/457 (22%), Positives = 182/457 (39%), Gaps = 62/457 (13%)

Query: 143 TLLLRCNKITDLNG-NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKIT 201
             + +   I  +          K+++       N  D VS  +  L  + TL      I 
Sbjct: 6   ATITQDTPINQIFTDTALAEKMKTVL----GKTNVTDTVSQTD--LDQVTTLQADRLGIK 59

Query: 202 DLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILN 261
            ++G    +L NL +++ S N+L  I           KL  + ++      N+       
Sbjct: 60  SIDG--VEYLNNLTQINFSNNQLTDIT----PLKNLTKLVDILMNN-----NQIADITPL 108

Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN-----NLFHFNIH-- 314
            NL  L  L + NN I +I    L NLT+LN + L  N IS I       +L   +    
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 166

Query: 315 ----------KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN 364
                       L+ + +S+N +  I       L  L ++  + N +  I  T    L N
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI--TPLGILTN 222

Query: 365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
           +  + L+ NQ+K I      +L NL  LDL +N++ +  L   S +T       L L  N
Sbjct: 223 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTE---LKLGAN 275

Query: 425 YITNLYENDKKQAPIYIKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDATA 483
            I+N+       A   + +L+L+ N+++++ P++ L+    +L  L L FN I  +  + 
Sbjct: 276 QISNISPLAGLTA---LTNLELNENQLEDISPISNLK----NLTYLTLYFNNISDI--SP 326

Query: 484 FGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNI 543
             +L  L+ L   +N ++ V   +   + N+  +    N+IS LT        ++  L +
Sbjct: 327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382

Query: 544 SHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESN 580
           +     + P +  +N  I     +     I P   S+
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISD 419

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (292), Expect = 6e-28
 Identities = 102/493 (20%), Positives = 183/493 (37%), Gaps = 76/493 (15%)

Query: 90  FDKIENIEQMT----LDLSHNKLSVLNMATLYSNVTKL--QHLGTTILKDREKLLSNLET 143
            ++I     +       L    ++     T    VT L    LG   +   E L +NL  
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL-NNLTQ 72

Query: 144 LLLRCNKITDLNGNLFRHLQK-SIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITD 202
           +    N++TD+     ++L K   +    N   +   +++    L+NL  L L  N+ITD
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLAN----LTNLTGLTLFNNQITD 126

Query: 203 LNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNK 262
           ++    ++L NL  L LS N +  I            LQ L     + +           
Sbjct: 127 IDP--LKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFGNQVTDLKPL------A 174

Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
           NL TLE L + +N + +I    L  LT+L  +    N+IS I        I   L E+ L
Sbjct: 175 NLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP----LGILTNLDELSL 228

Query: 323 SNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNA 382
           + N L+ I +    +L  L  + L+ N + ++       L  +  + L  NQI  I  + 
Sbjct: 229 NGNQLKDIGT--LASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNI--SP 282

Query: 383 FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIK 442
              L  L  L+L +N+L+D  ++  SN+ +      L L  N I+++             
Sbjct: 283 LAGLTALTNLELNENQLED--ISPISNLKNLTY---LTLYFNNISDI------------- 324

Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV 502
                       PV+ L      L++L+   N++  + +    NL  +  LS  HN I+ 
Sbjct: 325 -----------SPVSSLT----KLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367

Query: 503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIE 562
           +       +  +  + L+    +         +  +     +       P  +       
Sbjct: 368 L--TPLANLTRITQLGLNDQAWTNAPVNYKA-NVSIPNTVKNVTGALIAPATISDGGSYT 424

Query: 563 KLDISYNQDKIRP 575
           + DI++N      
Sbjct: 425 EPDITWNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.4 bits (238), Expect = 4e-21
 Identities = 91/459 (19%), Positives = 175/459 (38%), Gaps = 52/459 (11%)

Query: 1   MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN-SKLRELEITGKDLKFI 59
           M   L    ++        +++ ++  L    L    + G+   + L ++  +   L  I
Sbjct: 27  MKTVLGKTNVTDT---VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 83

Query: 60  DPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
            P     +     L  + + N QI ++       + N+    L L +N+++ ++     +
Sbjct: 84  TP-----LKNLTKLVDILMNNNQIADITP--LANLTNLT--GLTLFNNQITDIDPLKNLT 134

Query: 119 NVTKLQHLGTTILKDREKL--LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNN 176
           N+ +L  L +  + D   L  L++L+ L                 L++  +     ++N 
Sbjct: 135 NLNRL-ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI-----SSNK 188

Query: 177 EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDV 236
              +S   KL +NLE+L+   N+I+D+       L NL ELSL+ N+L+ I         
Sbjct: 189 VSDISVLAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLAS 241

Query: 237 FEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINL 296
              L  L+++     +N+         L  L  L +  N I NI    L  LT+L  + L
Sbjct: 242 LTNLTDLDLA-----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294

Query: 297 EYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT 356
             N++  I       +  K L  + L  N +  I      +L +L  +    N +  +  
Sbjct: 295 NENQLEDISP----ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 346

Query: 357 TSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP 416
           +S  NL N+  +    NQI  + P    NL  + +L L D    +  +N  +N++   T 
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

Query: 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP 455
            N+  +      + +             D++ N      
Sbjct: 405 KNVTGALIAPATISDGGS------YTEPDITWNLPSYTN 437

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  116 bits (292), Expect = 2e-27
 Identities = 80/416 (19%), Positives = 151/416 (36%), Gaps = 45/416 (10%)

Query: 187 LSNLETLLLRCNKITDL--NGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLE 244
            ++L +L L  N ++              L+ L++S N L      S        L++L+
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLD 157

Query: 245 ISFSLFNSNEFPYYILNKNLNTLEWLAMDNN---------NIKNIR------NY------ 283
           +S +  +      ++L+     L+ LA+  N            N+       N       
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 217

Query: 284 SLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLE-LIESDTFYNLKEL 341
            L + ++L ++++  NK+S      +        LK + +S+N     I      +L+ L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTC---TELKLLNISSNQFVGPIPPLPLKSLQYL 274

Query: 342 NTITLSYNLLK-SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLK 400
           +   L+ N     I        + +  + LS N      P  F +   L  L L  N   
Sbjct: 275 S---LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 401 D-FNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ-EVPVNF 458
               ++    +   +    L+LS N  +             + +LDLS+N     +  N 
Sbjct: 332 GELPMDTLLKMRGLK---VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388

Query: 459 LQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIID 518
            Q   ++L++LYL  N           N   L  L L  N ++  +  +   +  L+ + 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 519 LSFNEISMLTGE---QFYFSFKLRILNISHNRLR-SLPRDVFSNTIIEKLDISYNQ 570
           L  N   ML GE   +  +   L  L +  N L   +P  + + T +  + +S N+
Sbjct: 449 LWLN---MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (281), Expect = 6e-26
 Identities = 119/605 (19%), Positives = 209/605 (34%), Gaps = 104/605 (17%)

Query: 2   TLDLSHNKLS--VLNMATLYSNVTKLQHLGTTILKGDQLQG---IFN-SKLRELEITGKD 55
            LDLS N +S   +    L     +L+HL    + G+++ G   +     L  L+++  +
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSRCVNLEFLDVSSNN 211

Query: 56  LKFIDPSAFDNIDACYDLT-LKITNTQIE-ELPSGLFDKIENIEQMTLDLSHNKLSVLNM 113
                P     +  C  L  L I+  ++  +    +      ++   L++S N+      
Sbjct: 212 FSTGIPF----LGDCSALQHLDISGNKLSGDFSRAIS-TCTELK--LLNISSNQFV---- 260

Query: 114 ATL-YSNVTKLQHLGT-------TILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKS 165
             +    +  LQ+L          I          L  L L  N      G +       
Sbjct: 261 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH---FYGAVPPFFGS- 316

Query: 166 IVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITD-LNGNLFRHLYNLQELSLSFNKL 224
                                 S LE+L L  N  +  L  +    +  L+ L LSFN+ 
Sbjct: 317 ---------------------CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 225 QIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYS 284
              EL  ++ ++   L  L++S + F S      +     NTL+ L + NN        +
Sbjct: 356 SG-ELPESLTNLSASLLTLDLSSNNF-SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

Query: 285 LYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT 343
           L N + L  ++L +N +S  I ++L       +L++++L  N LE         +K L T
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSL---SKLRDLKLWLNMLEGEIPQELMYVKTLET 470

Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
           + L +N L     +   N  N+  I LS N++    P     L NL  L L +N      
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 404 LNVFSNITSKQTPMNLNLSNNYIT--------NLYENDKKQAPIYIKSLDLSNNRI-QEV 454
                +  S      L+L+ N                          S  ++ N I  + 
Sbjct: 531 PAELGDCRSLIW---LDLNTNLFNGTIPAAMFKQ-------------SGKIAANFIAGKR 574

Query: 455 PVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNL 514
            V               +  E + + +     L      ++           TF    ++
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634

Query: 515 QIIDLSFN--------EISMLTGEQFYFSFKLRILNISHNRLR-SLPRDVFSNTIIEKLD 565
             +D+S+N        EI  +          L ILN+ HN +  S+P +V     +  LD
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPY--------LFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 566 ISYNQ 570
           +S N+
Sbjct: 687 LSSNK 691

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.3 bits (243), Expect = 3e-21
 Identities = 70/397 (17%), Positives = 136/397 (34%), Gaps = 55/397 (13%)

Query: 188 SNLETLLLRCNKITDLNGNL---FRHLYNLQELSLSFNKL--QIIELNSNVFDVFEKLQL 242
             + ++ L    +      +      L  L+ L LS + +   +             L  
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKC-----SASLTS 104

Query: 243 LEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI-KNIRNYSLYNLTSLNYINLEYNKI 301
           L++S +   S          + + L++L + +N +    +      L SL  ++L  N I
Sbjct: 105 LDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163

Query: 302 S-KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK-SIKTTSF 359
           S          +    LK + +S N +             L  + +S N     I     
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGI--PFL 219

Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNL 419
            + + + ++ +S N++   +  A      L  L++  N+                     
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF------------------VG 261

Query: 420 NLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ-EVPVNFLQTFADSLRKLYLDFNEIKH 478
            +    + +L            + L L+ N+   E+P         +L  L L  N    
Sbjct: 262 PIPPLPLKSL------------QYLSLAENKFTGEIPDFLSGACD-TLTGLDLSGNHFYG 308

Query: 479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIG-MPNLQIIDLSFNEIS-MLTGEQFYFSF 536
                FG+  +LE L+L  NN +  +    +  M  L+++DLSFNE S  L       S 
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368

Query: 537 KLRILNISHNRLR-SLPRDVFSNTI--IEKLDISYNQ 570
            L  L++S N     +  ++  N    +++L +  N 
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 5e-21
 Identities = 115/602 (19%), Positives = 210/602 (34%), Gaps = 119/602 (19%)

Query: 2   TLDLSHNKLS-VLNMATLYSNVTKLQHLGTTILKGDQLQGIFN-------SKLRELEITG 53
           +LDLS N LS  +   T   + + L+ L    +  + L            + L  L+++ 
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLN---VSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

Query: 54  KDLKFIDPSAFDNIDACYDLT-LKITNTQIE-ELPSGLFDKIENIEQMTLDLSHNKLSVL 111
             +   +   +   D C +L  L I+  +I  ++       +E      LD+S N  S  
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE-----FLDVSSNNFS-- 213

Query: 112 NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKK 171
                    T +  LG           S L+ L +  NK   L+G+  R +         
Sbjct: 214 ---------TGIPFLGD---------CSALQHLDISGNK---LSGDFSRAIST------- 245

Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNL-FRHLYNLQELSLSFNKLQIIELN 230
                           + L+ L +  N+     G +    L +LQ LSL+ NK    E+ 
Sbjct: 246 ---------------CTELKLLNISSNQ---FVGPIPPLPLKSLQYLSLAENKFT-GEIP 286

Query: 231 SNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK-NIRNYSLYNLT 289
             +    + L  L++S + F     P +    + + LE LA+ +NN    +   +L  + 
Sbjct: 287 DFLSGACDTLTGLDLSGNHF-YGAVPPFF--GSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 290 SLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYL--ELIESDTFYNLKELNTITL 346
            L  ++L +N+ S ++  +L   N+   L  + LS+N     ++ +        L  + L
Sbjct: 344 GLKVLDLSFNEFSGELPESL--TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNV 406
             N        +  N + ++++ LSFN +    P++  +L  L  L L  N L+      
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

Query: 407 FSNITSKQTPMNLNLSNNYIT--------NLYENDKKQAPIYIKSLDLSNNRIQ-EVPVN 457
              + + +T   L L  N +T        N            +  + LSNNR+  E+P  
Sbjct: 462 LMYVKTLET---LILDFNDLTGEIPSGLSNC---------TNLNWISLSNNRLTGEIPKW 509

Query: 458 F--LQTFADSLRKLYLDFN----EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGM 511
              L+    +L  L L  N     I        G+   L  L L  N     +       
Sbjct: 510 IGRLE----NLAILKLSNNSFSGNIPA----ELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561

Query: 512 PNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR---SLPRDVFSNTIIEKLDISY 568
                  ++ N I+             +  + + N L         +   +     +I+ 
Sbjct: 562 SG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 569 NQ 570
             
Sbjct: 618 RV 619

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 7e-15
 Identities = 100/541 (18%), Positives = 176/541 (32%), Gaps = 113/541 (20%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
            L L+ NK +      L      L  L    L G+   G               L+ +  
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLD---LSGNHFYGAVPPFFGSC----SLLESLA- 324

Query: 62  SAFDNIDACYDLTLKITNTQIE-ELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNV 120
                          +++     ELP     K+  ++   LDLS N+ S           
Sbjct: 325 ---------------LSSNNFSGELPMDTLLKMRGLK--VLDLSFNEFS----------- 356

Query: 121 TKLQHLGTTILKDREKLLSNLETLLLRCNKIT-DLNGNLFRHLQKSIVKAKKNNNNNEDQ 179
                 G  + +    L ++L TL L  N  +  +  NL ++ + ++ +    NN    +
Sbjct: 357 ------GE-LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 180 VSDREKLLSNLETLLLRCNKITDLNGNL---FRHLYNLQELSLSFNKLQIIELNSNVFDV 236
           +       S L +L L  N    L+G +      L  L++L L  N L+  E+   +   
Sbjct: 410 IPPTLSNCSELVSLHLSFNY---LSGTIPSSLGSLSKLRDLKLWLNMLEG-EIPQELMY- 464

Query: 237 FEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK-NIRNYSLYNLTSLNYIN 295
            + L+ L + F+   + E P  +   N   L W+++ NN +   I    +  L +L  + 
Sbjct: 465 VKTLETLILDFNDL-TGEIPSGL--SNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILK 520

Query: 296 LEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLE-LIESDTFYNLKELNTITLSYNLLKS 353
           L  N  S  I   L      + L  + L+ N     I +  F    ++    ++      
Sbjct: 521 LSNNSFSGNIPAELGDC---RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577

Query: 354 IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSK 413
           IK           +   +  + + I       L      ++            F N  S 
Sbjct: 578 IKNDGM---KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS- 633

Query: 414 QTPMNLNLSNNY--------ITNLYENDKKQAPIYIKSLDLSNNRIQ-EVPVNFLQTFAD 464
              M L++S N         I ++          Y+  L+L +N I   +P         
Sbjct: 634 --MMFLDMSYNMLSGYIPKEIGSM---------PYLFILNLGHNDISGSIPDEV------ 676

Query: 465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI 524
                               G+L  L +L L  N +   + +    +  L  IDLS N +
Sbjct: 677 --------------------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 525 S 525
           S
Sbjct: 717 S 717

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  107 bits (269), Expect = 1e-25
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 2/165 (1%)

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
           +    ++L +N +S++            L  + LS+N+L  I S+ F  +  L  + LS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWT-PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
           N L ++    F +L  +  ++L  N I  +  NAF ++  L KL L  N++  F + +  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 409 NITSKQTPMNLNLSNNYITNLYENDKKQAP-IYIKSLDLSNNRIQ 452
           +       M L+LS+N +  L   D ++ P      L L NN ++
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  101 bits (252), Expect = 2e-23
 Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 32/192 (16%)

Query: 312 NIHKRLKEIRLSNNYLELIESDT-FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
           ++      + LS+N L  + ++     L  L+++ LS+N L  I + +F  + N+  + L
Sbjct: 36  SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
           S N +  +    F +L  L  L L +N +   + N F ++                    
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ------------------ 137

Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLD 488
                     ++ L LS N+I   PV  ++       L  L L  N++K L  T    L 
Sbjct: 138 ----------LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 489 VLELLSLE-HNN 499
                 L  HNN
Sbjct: 188 AWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 99.1 bits (247), Expect = 8e-23
 Identities = 49/212 (23%), Positives = 78/212 (36%), Gaps = 40/212 (18%)

Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TSFKNLNNMLNIVLSFNQIK 376
             +  S   L  +          L+   LS+N L  ++   +   L N+ +++LS N + 
Sbjct: 21  NILSCSKQQLPNVPQSLPSYTALLD---LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
           +I   AFV +PNL  LDL  N L   +  +FS++ +                        
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA------------------------ 113

Query: 437 APIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDV---LE 491
               ++ L L NN I  V  N    F D   L+KLYL  N+I         + +    L 
Sbjct: 114 ----LEVLLLYNNHIVVVDRN---AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166

Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNE 523
           LL L  N +  +       +P      L  + 
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 96.1 bits (239), Expect = 1e-21
 Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P Y   LDLS+N +  +   +  T   +L  L L  N +  + + AF  +  L  L L  
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
           N++  + +  F  +  L+++ L  N I ++    F    +L+ L +S N++   P ++  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 558 N----TIIEKLDISYNQ 570
           +      +  LD+S N+
Sbjct: 158 DGNKLPKLMLLDLSSNK 174

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 93.4 bits (232), Expect = 8e-21
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 14/172 (8%)

Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI 451
           L     +L +   ++ S          L+LS+N ++ L           + SL LS+N +
Sbjct: 23  LSCSKQQLPNVPQSLPSYTA------LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL 76

Query: 452 QEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFI 509
             +       F    +LR L L  N +  LD   F +L  LE+L L +N+I VV +  F 
Sbjct: 77  NFISSE---AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE 133

Query: 510 GMPNLQIIDLSFNEISMLTGEQFYFSFK---LRILNISHNRLRSLPRDVFSN 558
            M  LQ + LS N+IS    E      K   L +L++S N+L+ LP      
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 93.4 bits (232), Expect = 9e-21
 Identities = 42/210 (20%), Positives = 68/210 (32%), Gaps = 54/210 (25%)

Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCN 198
           S    L L  N ++ L                                L+NL +LLL  N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTR------------------------LTNLHSLLLSHN 74

Query: 199 KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY 258
            +  ++   F  + NL+ L LS N L    L+  +F                        
Sbjct: 75  HLNFISSEAFVPVPNLRYLDLSSNHLH--TLDEFLFS----------------------- 109

Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIH-KRL 317
               +L  LE L + NN+I  +   +  ++  L  + L  N+IS+    L        +L
Sbjct: 110 ----DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165

Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLS 347
             + LS+N L+ +       L       L 
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 47/239 (19%), Positives = 83/239 (34%), Gaps = 36/239 (15%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
            LDLSHN LS L      + +T L  L   +L  + L       F     LR L+++   
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSL---LLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 56  LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
           L  +D   F ++ A   L  L + N  I  +    F+ +  ++   L LS N++S   + 
Sbjct: 100 LHTLDEFLFSDLQA---LEVLLLYNNHIVVVDRNAFEDMAQLQ--KLYLSQNQISRFPVE 154

Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
            +                     L  L  L L  NK+  L     + L   +      +N
Sbjct: 155 LI----------------KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

Query: 175 NN-----EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIE 228
           N      +            L +++     +  ++     ++++L   + S  K    E
Sbjct: 199 NPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWE 257

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 36/178 (20%), Positives = 56/178 (31%), Gaps = 51/178 (28%)

Query: 74  TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKD 133
           +L +++  +  + S  F  + N+    LDLS N L  L+                     
Sbjct: 68  SLLLSHNHLNFISSEAFVPVPNLR--YLDLSSNHLHTLDEFLFSD--------------- 110

Query: 134 REKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETL 193
               L  LE LLL  N I  ++ N F                           ++ L+ L
Sbjct: 111 ----LQALEVLLLYNNHIVVVDRNAFED-------------------------MAQLQKL 141

Query: 194 LLRCNKITDLNGNLFR---HLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS 248
            L  N+I+     L +    L  L  L LS NKL+  +L               +   
Sbjct: 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK--KLPLTDLQKLPAWVKNGLYLH 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  103 bits (260), Expect = 2e-25
 Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 9/213 (4%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNL-LKSIKTTSFKNLNNMLNIVL 370
           ++    + ++L   +L  I S  F NL  ++ I +S ++ L+ +++ SF NL+ + +I +
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 371 SFNQ-IKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
              + + YI P+A   LP L  L + +  LK F        T     + +   N Y+T++
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI-TDNPYMTSI 146

Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS-LRKLYLDFN-EIKHLDATAFGNL 487
             N  +       +L L NN    V       F  + L  +YL+ N  +  +D  AFG +
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFTSVQGY---AFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 488 -DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL 519
                LL +   ++  +  +    +  L   + 
Sbjct: 204 YSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 97.8 bits (244), Expect = 4e-23
 Identities = 39/243 (16%), Positives = 84/243 (34%), Gaps = 37/243 (15%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L  + +TL L    +  +  + F +L N+  + +S + + + +L S+ F    K+  +EI
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEI 87

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
                                      +  N+  I   +L  L  L ++ +    +    
Sbjct: 88  R--------------------------NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNL-KELNTITLSYNLLKSIKTTSFKNLNN 364
           +    ++           N Y+  I  + F  L  E  T+ L  N   S++  +F     
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-K 180

Query: 365 MLNIVLSFNQ-IKYIYPNAFVNLPN-LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
           +  + L+ N+ +  I  +AF  + +    LD+    +         ++        L   
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK------ELIAR 234

Query: 423 NNY 425
           N +
Sbjct: 235 NTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 90.8 bits (226), Expect = 8e-21
 Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 35/225 (15%)

Query: 340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN-QIKYIYPNAFVNLPNLVKLDLQDNK 398
              T+ L    L++I + +F NL N+  I +S +  ++ +  ++F NL  +  +++++ +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 399 -LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN 457
            L   + +    +                              +K L + N  ++  P  
Sbjct: 92  NLTYIDPDALKELPL----------------------------LKFLGIFNTGLKMFPDL 123

Query: 458 FLQTFADSLRKLYL-DFNEIKHLDATAFGNL-DVLELLSLEHNNIAVVVKRTFIGMPNLQ 515
                 D    L + D   +  +   AF  L +    L L +N    V    F G   L 
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLD 182

Query: 516 IIDLSFN-EISMLTGEQFY-FSFKLRILNISHNRLRSLPRDVFSN 558
            + L+ N  ++++  + F        +L++S   + +LP     +
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 85.8 bits (213), Expect = 5e-19
 Identities = 34/263 (12%), Positives = 87/263 (33%), Gaps = 60/263 (22%)

Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
           L  + +TL L    +  +  + F +                         L N+  + + 
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSN-------------------------LPNISRIYVS 63

Query: 197 CN-KITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEF 255
            +  +  L  + F +L  +  + +   +  +  ++ +                       
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALK-------------------- 102

Query: 256 PYYILNKNLNTLEWLAMDNNNIKNIRNYS-LYNLTSLNYINLEYN-KISKIHNNLFHFNI 313
                   L  L++L + N  +K   + + +Y+      + +  N  ++ I  N F   +
Sbjct: 103 -------ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ-GL 154

Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIV-LS 371
                 ++L NN    ++   F   K L+ + L+ N  L  I   +F  + +  +++ +S
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 372 FNQIKYIYPNAFVNLPNLVKLDL 394
              +  +      +L  L+  + 
Sbjct: 214 QTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 31/228 (13%), Positives = 67/228 (29%), Gaps = 36/228 (15%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
           TL L    L  +      SN+  +  +         +    +  L++          ++ 
Sbjct: 35  TLKLIETHLRTIPSHAF-SNLPNISRI--------YVSI--DVTLQQ----------LES 73

Query: 62  SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
            +F N+     + ++     +  +      ++  ++   L + +  L +    T   +  
Sbjct: 74  HSFYNLSKVTHIEIR-NTRNLTYIDPDALKELPLLK--FLGIFNTGLKMFPDLTKVYSTD 130

Query: 122 KLQHLGT------TILKDR--EKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNN 173
               L        T +     + L +   TL L  N  T + G  F   +  +     N 
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK--LDAVYLNK 188

Query: 174 NNNEDQVSDR--EKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSL 219
           N     +       + S    L +    +T L      HL  L   + 
Sbjct: 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 34/253 (13%), Positives = 78/253 (30%), Gaps = 51/253 (20%)

Query: 46  LRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSH 105
            + L++    L+ I   AF N+     + +   +  +++L S  F  +  +    +++ +
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVT--HIEIRN 89

Query: 106 NKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKS 165
            +               L ++    LK+    L  L+ L +    +         +    
Sbjct: 90  TR--------------NLTYIDPDALKE----LPLLKFLGIFNTGLKMFPDLTKVYSTDI 131

Query: 166 IVKAKKNNNNNEDQVSDR--EKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK 223
               +  +N     +     + L +   TL L  N  T + G  F     L  + L+ NK
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNK 190

Query: 224 LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
             +  ++ + F                              +    L +   ++  + + 
Sbjct: 191 -YLTVIDKDAFG--------------------------GVYSGPSLLDVSQTSVTALPSK 223

Query: 284 SLYNLTSLNYINL 296
            L +L  L   N 
Sbjct: 224 GLEHLKELIARNT 236

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  101 bits (253), Expect = 4e-24
 Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 35/212 (16%)

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
                ++L+ NK+S + +  FH      L+ + L++N L+ + +  F  LK L T+ ++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTK--LRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
           N L+++    F  L N+  + L  NQ+K + P  F +L  L  L L  N+L+     VF 
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 409 NITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SL 466
            +TS                            +K L L NN+++ VP      F     L
Sbjct: 155 KLTS----------------------------LKELRLYNNQLKRVPEG---AFDKLTEL 183

Query: 467 RKLYLDFNEIKHLDATAFGNLDVLELLSLEHN 498
           + L LD N++K +   AF +L+ L++L L+ N
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  100 bits (251), Expect = 7e-24
 Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 31/210 (14%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
           ++ + L L+ NK++ L    F  L  L+ L L+ NKLQ +   + +F             
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP--AGIFK------------ 82

Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
                           L  LE L + +N ++ +       L +L  + L+ N++  +   
Sbjct: 83  ---------------ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127

Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
           +F  ++ K L  + L  N L+ +    F  L  L  + L  N LK +   +F  L  +  
Sbjct: 128 VFD-SLTK-LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185

Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
           + L  NQ+K +   AF +L  L  L LQ+N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 97.7 bits (244), Expect = 6e-23
 Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 33/213 (15%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
           NI    K++ L +N L  + S  F+ L +L  + L+ N L+++    FK L N+  + ++
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE 431
            N+++ +    F  L NL +L L  N+LK     VF ++T                    
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY---------------- 137

Query: 432 NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDV 489
                       L L  N +Q +P      F    SL++L L  N++K +   AF  L  
Sbjct: 138 ------------LSLGYNELQSLPKG---VFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182

Query: 490 LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
           L+ L L++N +  V +  F  +  L+++ L  N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 91.6 bits (228), Expect = 7e-21
 Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 33/191 (17%)

Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
           L  N++  +   AF  L  L  L L DNKL+     +F  + + +T              
Sbjct: 44  LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET-------------- 89

Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNL 487
                         L +++N++Q +P+     F    +L +L LD N++K L    F +L
Sbjct: 90  --------------LWVTDNKLQALPIG---VFDQLVNLAELRLDRNQLKSLPPRVFDSL 132

Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNR 547
             L  LSL +N +  + K  F  + +L+ + L  N++  +    F    +L+ L + +N+
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192

Query: 548 LRSLPRDVFSN 558
           L+ +P   F +
Sbjct: 193 LKRVPEGAFDS 203

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.9 bits (190), Expect = 7e-16
 Identities = 49/231 (21%), Positives = 82/231 (35%), Gaps = 63/231 (27%)

Query: 75  LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG------T 128
           L + + ++  LPS  F ++  +    L L+ NKL  L  A ++  +  L+ L        
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLR--LLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQ 98

Query: 129 TILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLS 188
            +       L NL  L L  N++  L   +F  L                         +
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL-------------------------T 133

Query: 189 NLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS 248
            L  L L  N++  L   +F  L +L+EL L  N+L+ +      FD             
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP--EGAFD------------- 178

Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
                          L  L+ L +DNN +K +   +  +L  L  + L+ N
Sbjct: 179 --------------KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
            S+D S+ ++  +P N     AD  +KL L  N++  L + AF  L  L LL L  N + 
Sbjct: 19  NSVDCSSKKLTAIPSNI---PAD-TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TI 560
            +    F  + NL+ + ++ N++  L    F     L  L +  N+L+SLP  VF + T 
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134

Query: 561 IEKLDISYNQ 570
           +  L + YN+
Sbjct: 135 LTYLSLGYNE 144

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 54/226 (23%), Positives = 84/226 (37%), Gaps = 58/226 (25%)

Query: 3   LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKDL 56
           LDL  NKLS L  +  +  +TKL+ L    L  ++LQ    GIF     L  L +T   L
Sbjct: 42  LDLQSNKLSSLP-SKAFHRLTKLRLLY---LNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 57  KFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATL 116
           + +    FD +    +L L     Q++ LP  +FD +  +    L L +N+L  L     
Sbjct: 98  QALPIGVFDQLVNLAELRL--DRNQLKSLPPRVFDSLTKLT--YLSLGYNELQSLPKGVF 153

Query: 117 YSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNN 176
                                L++L+ L L  N++  +    F                 
Sbjct: 154 DK-------------------LTSLKELRLYNNQLKRVPEGAFDK--------------- 179

Query: 177 EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFN 222
                     L+ L+TL L  N++  +    F  L  L+ L L  N
Sbjct: 180 ----------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (255), Expect = 3e-23
 Identities = 84/430 (19%), Positives = 157/430 (36%), Gaps = 73/430 (16%)

Query: 134 REKLLSNLETLLLRCNKITDLNGNLFRHLQ-----------KSIVKAKKNNNNNEDQVSD 182
           R    + L+  L   + +T++                    +                  
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 183 REKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQL 242
           R+ L      L L    ++ L         +L+ L  S N L  +       ++ + L+ 
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPP----HLESLVASCNSLTELP------ELPQSLKS 115

Query: 243 LEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS 302
           L +  +   +       L+     LE+L + NN ++ +    L N + L  I+++ N + 
Sbjct: 116 LLVDNNNLKA-------LSDLPPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLK 166

Query: 303 KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL 362
           K+ +          L+ I   NN LE +      NL  L  I    N LK +        
Sbjct: 167 KLPDLPPS------LEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKL----PDLP 214

Query: 363 NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
            ++ +IV   N ++ +      NLP L  +   +N LK    ++  ++ +      LN+ 
Sbjct: 215 LSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKTLP-DLPPSLEA------LNVR 265

Query: 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDAT 482
           +NY+T+L      + P  +  LD+S N       + L     +L  L    NEI+ L   
Sbjct: 266 DNYLTDL-----PELPQSLTFLDVSENIF-----SGLSELPPNLYYLNASSNEIRSL--- 312

Query: 483 AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
                  LE L++ +N +  +        P L+ +  SFN ++ +          L+ L+
Sbjct: 313 -CDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPEL----PQNLKQLH 363

Query: 543 ISHNRLRSLP 552
           + +N LR  P
Sbjct: 364 VEYNPLREFP 373

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.4 bits (243), Expect = 9e-22
 Identities = 75/397 (18%), Positives = 142/397 (35%), Gaps = 63/397 (15%)

Query: 183 REKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKL---------QIIELNSNV 233
           R    + L+  L   + +T++      ++ +  E   ++++          +  E+  + 
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 234 FDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNY 293
                  Q  E+  +    +  P     +    LE L    N++  +      +L SL  
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLP-----ELPPHLESLVASCNSLTELPE-LPQSLKSLLV 118

Query: 294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS 353
            N     +S +   L         + + +SNN LE +      N   L  I +  N LK 
Sbjct: 119 DNNNLKALSDLPPLL---------EYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKK 167

Query: 354 IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSK 413
           +         ++  I    NQ++ +      NLP L  +   +N LK           S 
Sbjct: 168 L----PDLPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKL----PDLPLSL 217

Query: 414 QTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDF 473
           ++   +   NN +  L E        ++ ++   NN ++ +P         SL  L +  
Sbjct: 218 ES---IVAGNNILEELPELQN---LPFLTTIYADNNLLKTLP-----DLPPSLEALNVRD 266

Query: 474 NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFY 533
           N +  L      +L  L++     + ++ +        PNL  ++ S NEI  L      
Sbjct: 267 NYLTDLPE-LPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEIRSLCDL--- 315

Query: 534 FSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
               L  LN+S+N+L  LP        +E+L  S+N 
Sbjct: 316 -PPSLEELNVSNNKLIELPALPPR---LERLIASFNH 348

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.3 bits (235), Expect = 1e-20
 Identities = 89/524 (16%), Positives = 181/524 (34%), Gaps = 88/524 (16%)

Query: 58  FIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLY 117
           FI+P    N+   +       ++ + E+P    +     E      + ++          
Sbjct: 2   FINPR---NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTE---YYNAWSEWERNAPPGN- 54

Query: 118 SNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNE 177
                 +     + + R+ L      L L    ++ L      HL+  +      + N+ 
Sbjct: 55  -----GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPP-HLESLVA-----SCNSL 103

Query: 178 DQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVF 237
            ++ +  + L +L         ++DL          L+ L +S N+L+ +    N     
Sbjct: 104 TELPELPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPELQN----S 152

Query: 238 EKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE 297
             L+++++  +           L     +LE++A  NN ++ +    L NL  L  I  +
Sbjct: 153 SFLKIIDVDNNSLKK-------LPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYAD 203

Query: 298 YNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTT 357
            N + K+ +          L+ I   NN LE +      NL  L TI    NLLK++   
Sbjct: 204 NNSLKKLPDLPLS------LESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLP-- 253

Query: 358 SFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM 417
                 ++  + +  N +  + P    +L  L   +   + L +   N++          
Sbjct: 254 --DLPPSLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSGLSELPPNLYY--------- 301

Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK 477
            LN S+N I +L +      P  ++ L++SNN++ E+P          L +L   FN + 
Sbjct: 302 -LNASSNEIRSLCDL-----PPSLEELNVSNNKLIELPALP-----PRLERLIASFNHLA 350

Query: 478 HLDATAFGNLDVL------------ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
            +      NL  L               S+E   +   +        NL+ + +  N + 
Sbjct: 351 EVPEL-PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409

Query: 526 MLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYN 569
                       +  L ++  R+          T   + D+  +
Sbjct: 410 EFPDI----PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.6 bits (215), Expect = 3e-18
 Identities = 77/444 (17%), Positives = 154/444 (34%), Gaps = 83/444 (18%)

Query: 74  TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKD 133
            L++ N  +  LP    +   ++E  +L  S N L+      L      L+ L       
Sbjct: 75  ELELNNLGLSSLP----ELPPHLE--SLVASCNSLT-----ELPELPQSLKSLLVDNNNL 123

Query: 134 RE--KLLSNLETLLLRCNKIT--------------DLNGNLFRHLQKSIVKAKK-NNNNN 176
           +    L   LE L +  N++               D++ N  + L       +     NN
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 183

Query: 177 EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDV 236
           + +     + L  L  +    N +  L         +L+ +    N L+ +         
Sbjct: 184 QLEELPELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEEL----PELQN 235

Query: 237 FEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINL 296
              L  +    +L  +       L     +LE L + +N + ++      +LT L+    
Sbjct: 236 LPFLTTIYADNNLLKT-------LPDLPPSLEALNVRDNYLTDLPE-LPQSLTFLDVSEN 287

Query: 297 EYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT 356
            ++ +S++  NL           +  S+N +  +  D   +L+ELN   +S N L  +  
Sbjct: 288 IFSGLSELPPNL---------YYLNASSNEIRSL-CDLPPSLEELN---VSNNKLIEL-- 332

Query: 357 TSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP 416
                   +  ++ SFN +  +         NL +L ++ N L++F  ++  ++   +  
Sbjct: 333 --PALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFP-DIPESVEDLRMN 385

Query: 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEI 476
            +L        NL            K L +  N ++E P        +S+  L ++   +
Sbjct: 386 SHLAEVPELPQNL------------KQLHVETNPLREFPDIP-----ESVEDLRMNSERV 428

Query: 477 KHLDATAFGNLDVLELLSLEHNNI 500
                 A    D LE    EH++ 
Sbjct: 429 VDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 54/316 (17%), Positives = 107/316 (33%), Gaps = 54/316 (17%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNS--KLRELEITGKDLKFI 59
            +   +N+L  L        +  L  L       + L+ + +    L  +      L   
Sbjct: 177 FIAAGNNQLEEL------PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL--- 227

Query: 60  DPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
                  +     LT +   N  ++ LP    D   ++E   L++  N L+ L    L  
Sbjct: 228 --EELPELQNLPFLTTIYADNNLLKTLP----DLPPSLE--ALNVRDNYLTDLP--ELPQ 277

Query: 119 NVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNED 178
           ++T L  +   I     +L  NL  L    N+I  L          S+ +   +NN    
Sbjct: 278 SLTFL-DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP-----PSLEELNVSNN---- 327

Query: 179 QVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFE 238
           ++ +   L   LE L+   N + ++         NL++L + +N L+         D+ E
Sbjct: 328 KLIELPALPPRLERLIASFNHLAEVPELPQ----NLKQLHVEYNPLREFP------DIPE 377

Query: 239 KLQLLEISFSLFNSNEFPY------------YILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
            ++ L ++  L    E P                     ++E L M++  + +   ++  
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHE 437

Query: 287 NLTSLNYINLEYNKIS 302
               L     E++   
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.0 bits (247), Expect = 3e-22
 Identities = 64/399 (16%), Positives = 130/399 (32%), Gaps = 53/399 (13%)

Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNS 231
                       E+L + L +L    + ITD+ G     L  L +L  + N +  ++L+ 
Sbjct: 27  AFEMQATDTISEEQL-ATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLDLSQ 83

Query: 232 NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
           N       L  L    +   + +         L  L +L  D N +  +    +     L
Sbjct: 84  NT-----NLTYLACDSNKLTNLDV------TPLTKLTYLNCDTNKLTKL---DVSQNPLL 129

Query: 292 NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL 351
            Y+N   N +++I  +        +L E+    N  + I         +L T+  S+N +
Sbjct: 130 TYLNCARNTLTEIDVSHN-----TQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKI 182

Query: 352 KSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNIT 411
             +          +  +    N I  +          L  LD   NKL + ++   + +T
Sbjct: 183 TEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVTPLTQLT 236

Query: 412 SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
                   + S N +T L  +   +    + +L      + E+ +          + +Y 
Sbjct: 237 Y------FDCSVNPLTELDVSTLSK----LTTLHCIQTDLLEIDLTHN------TQLIYF 280

Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531
                + +      +   L LL  +   I  +        P L  + L+  E++ L    
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELDVSH 337

Query: 532 FYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
                KL+ L+  +  ++     V     +     +  Q
Sbjct: 338 NT---KLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQ 372

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.5 bits (212), Expect = 8e-18
 Identities = 73/397 (18%), Positives = 124/397 (31%), Gaps = 49/397 (12%)

Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLF 159
           +LD  ++ ++ +      + +TKL      I        +NL  L    NK+T+L+    
Sbjct: 46  SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPL 105

Query: 160 RHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSL 219
             L          N   +  VS        L  L    N +T+++     H   L EL  
Sbjct: 106 TKLTYLNCD---TNKLTKLDVSQ----NPLLTYLNCARNTLTEID---VSHNTQLTELDC 155

Query: 220 SFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN 279
             NK     +         +L  L+ SF+     +            L  L  D NNI  
Sbjct: 156 HLNKK----ITKLDVTPQTQLTTLDCSFNKITELDV------SQNKLLNRLNCDTNNITK 205

Query: 280 IRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLK 339
           +    L     L +++   NK+++I           +L     S N L  ++  T   L 
Sbjct: 206 L---DLNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257

Query: 340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
            L+        L  I  T    L             + I      +   L  LD Q   +
Sbjct: 258 TLH---CIQTDLLEIDLTHNTQLIY-----FQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309

Query: 400 KDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFL 459
            + +L+    +        L L+N  +T L           +KSL   N  IQ+      
Sbjct: 310 TELDLSQNPKLV------YLYLNNTELTEL----DVSHNTKLKSLSCVNAHIQDFSSV-- 357

Query: 460 QTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
                +L   +    +   +      N  +   +S +
Sbjct: 358 -GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 54/319 (16%), Positives = 106/319 (33%), Gaps = 40/319 (12%)

Query: 252 SNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHF 311
           +  F  +  + N  +    A +      I    L  LTSL   +   + I+ +       
Sbjct: 8   TQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSL---DCHNSSITDMTG----I 60

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
                L ++  ++N +  ++         L  +    N L ++       L  +  +   
Sbjct: 61  EKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCD 114

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE 431
            N++  +  +     P L  L+   N L + +++  + +T       L+   N      +
Sbjct: 115 TNKLTKLDVS---QNPLLTYLNCARNTLTEIDVSHNTQLTE------LDCHLNKKITKLD 165

Query: 432 NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE 491
              +     + +LD S N+I E+ V+  +     L +L  D N I  LD         L 
Sbjct: 166 VTPQTQ---LTTLDCSFNKITELDVSQNK----LLNRLNCDTNNITKLD---LNQNIQLT 215

Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
            L    N +  +       +  L   D S N ++ L         KL  L+     L  +
Sbjct: 216 FLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEI 269

Query: 552 PRDVFSNTIIEKLDISYNQ 570
             D+  NT +        +
Sbjct: 270 --DLTHNTQLIYFQAEGCR 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 67/442 (15%), Positives = 157/442 (35%), Gaps = 59/442 (13%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGI---FNSKLRELEITGKDLKF 58
           +LD  ++ ++ +      + + KL  L   I   + +  +    N+ L  L      L  
Sbjct: 46  SLDCHNSSITDM------TGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN 99

Query: 59  IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
           +D +    +       L     ++ +L       +       L+ + N L+ ++++    
Sbjct: 100 LDVTPLTKLT-----YLNCDTNKLTKLDVSQNPLLT-----YLNCARNTLTEIDVSHNTQ 149

Query: 119 NVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNED 178
                 HL   I K      + L TL    NKIT+L+ +  + L +        + NN  
Sbjct: 150 LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNC-----DTNNIT 204

Query: 179 QVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFE 238
           ++   +     L  L    NK+T+++      L  L     S N L  +++++       
Sbjct: 205 KLDLNQ--NIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVST-----LS 254

Query: 239 KLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEY 298
           KL  L    +     +        +   L +   +      I+   + + T L  ++ + 
Sbjct: 255 KLTTLHCIQTDLLEIDL------THNTQLIYFQAEGCR--KIKELDVTHNTQLYLLDCQA 306

Query: 299 NKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS 358
             I+++       + + +L  + L+N  L  ++     +  +L +++     ++    +S
Sbjct: 307 AGITEL-----DLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDF--SS 356

Query: 359 FKNLNNMLNIVLSFNQIKYIYPNAFVNL-------PNLVKLDLQDNKLKDFNLNVFSNIT 411
              +  + N   +  Q   +      N        P+L+        ++  +  V+   T
Sbjct: 357 VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQAT 416

Query: 412 SKQTPMNLNLSNNYITNLYEND 433
           +  T  NL+  N  +T  + ++
Sbjct: 417 NTITWENLSTDNPAVTYTFTSE 438

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 56/375 (14%), Positives = 124/375 (33%), Gaps = 61/375 (16%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDP 61
            L+ + N L+ ++++   + +T+L       +    +     ++L  L+ +   +  +D 
Sbjct: 131 YLNCARNTLTEIDVSHN-TQLTELDCHLNKKITKLDVTP--QTQLTTLDCSFNKITELDV 187

Query: 62  SAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVT 121
           S    ++      L      I +L      ++       LD S NKL+ +++  L + +T
Sbjct: 188 SQNKLLN-----RLNCDTNNITKLDLNQNIQLT-----FLDCSSNKLTEIDVTPL-TQLT 236

Query: 122 KLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS 181
                   + +     LS L TL      + +++      L     +A+      E  V+
Sbjct: 237 YFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY--FQAEGCRKIKELDVT 294

Query: 182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
                 + L  L  +   IT+L+         L  L L+  +L  +++            
Sbjct: 295 H----NTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDV------------ 335

Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKI 301
                                +   L+ L+  N +I++    S+  + +LN       + 
Sbjct: 336 --------------------SHNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQT 373

Query: 302 SKIHNNLFHFN---IHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY-NLLKSIKTT 357
             +       N   I      +    N + +   D     +  NTIT    +      T 
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTY 433

Query: 358 SFKNLNNMLNIVLSF 372
           +F + N  +   ++ 
Sbjct: 434 TFTSENGAIVGTVTT 448

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 92.4 bits (230), Expect = 1e-21
 Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
            ++  I LE N I  I    F    +K+L+ I LSNN +  +  D F  L+ LN++ L  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSP--YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
           N +  +  + F+ L ++  ++L+ N+I  +  +AF +L NL  L L DNKL+      FS
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 409 NITSKQTPMNLNLSNN 424
            + + QT   ++L+ N
Sbjct: 150 PLRAIQT---MHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 31/162 (19%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
             +  + L  N I  +    F     L+ + LS N++   EL  + F             
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQ------------ 77

Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
                           L +L  L +  N I  +       L SL  + L  NKI+ +  +
Sbjct: 78  ---------------GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 122

Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN 349
            F  ++H  L  + L +N L+ I   TF  L+ + T+ L+ N
Sbjct: 123 AFQ-DLHN-LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 447 SNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKR 506
               + E+P N  +T    + ++ L+ N IK +   AF     L  + L +N I+ +   
Sbjct: 19  RGKGLTEIPTNLPET----ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74

Query: 507 TFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLD 565
            F G+ +L  + L  N+I+ L    F   F L++L ++ N++  L  D F +   +  L 
Sbjct: 75  AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134

Query: 566 ISYNQ 570
           +  N+
Sbjct: 135 LYDNK 139

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.5 bits (186), Expect = 9e-16
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
           N+ + + EIRL  N +++I    F   K+L  I LS N +  +   +F+ L ++ ++VL 
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
            N+I  +  + F  L +L  L L  NK+    ++ F ++ +      L+L +N +  +
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL---LSLYDNKLQTI 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P  I  + L  N I+ +P      +   LR++ L  N+I  L   AF  L  L  L L  
Sbjct: 31  PETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
           N I  + K  F G+ +LQ++ L+ N+I+ L  + F     L +L++  N+L+++ +  FS
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 558 N 558
            
Sbjct: 150 P 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNE 475
            + L  N I  +           ++ +DLSNN+I E+  +    F    SL  L L  N+
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPD---AFQGLRSLNSLVLYGNK 91

Query: 476 IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS 535
           I  L  + F  L  L+LL L  N I  +    F  + NL ++ L  N++  +    F   
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 536 FKLRILNISHN 546
             ++ ++++ N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 34/163 (20%)

Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN--NNEDQVSDREKLLSNLETLLLR 196
             +  + L  N I  +    F   +K       NN               L +L +L+L 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLY 88

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
            NKIT+L  +LF  L++LQ L L+ NK+  +    + F                      
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLR--VDAFQ--------------------- 125

Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
                 +L+ L  L++ +N ++ I   +   L ++  ++L  N
Sbjct: 126 ------DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 15/131 (11%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
            + L  N + V+     +S   KL+ +    L  +Q+       F     L  L + G  
Sbjct: 36  EIRLEQNTIKVIP-PGAFSPYKKLRRID---LSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 56  LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT 115
           +  +  S F+ + +   L L     +I  L    F  + N+    L L  NKL  +   T
Sbjct: 92  ITELPKSLFEGLFSLQLLLLN--ANKINCLRVDAFQDLHNLN--LLSLYDNKLQTIAKGT 147

Query: 116 LYSNVTKLQHL 126
             S +  +Q +
Sbjct: 148 F-SPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNS--KLRELEITGKD 55
            +DLS+N++S L           L+ L + +L G+++      +F     L+ L +    
Sbjct: 60  RIDLSNNQISELAPDAFQ----GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115

Query: 56  LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLD 102
           +  +   AF ++     L+L   + +++ +  G F  +  I+ M L 
Sbjct: 116 INCLRVDAFQDLHNLNLLSL--YDNKLQTIAKGTFSPLRAIQTMHLA 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 91.7 bits (228), Expect = 1e-20
 Identities = 48/255 (18%), Positives = 83/255 (32%), Gaps = 63/255 (24%)

Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
             E+      L  +  D   +   L+   LS NLL +    +      +  + L   ++ 
Sbjct: 12  HLEVNCDKRNLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
            +       LP L  LDL  N+L+     +   + +                        
Sbjct: 69  KL--QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTV--------------------- 104

Query: 437 APIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATAFGNLDVLELLS 494
                  LD+S NR+  +P+           L++LYL  NE+K L          LE LS
Sbjct: 105 -------LDVSFNRLTSLPLG---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154

Query: 495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD 554
           L +NN+  +      G+ NL  + L                          N L ++P+ 
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLL------------------------QENSLYTIPKG 190

Query: 555 VFSNTIIEKLDISYN 569
            F + ++    +  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 89.0 bits (221), Expect = 8e-20
 Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 35/212 (16%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L  +   L L  N +   +         L +L+L   +L  ++    V            
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ----VDG---------- 74

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
                             L  L  L + +N ++++       L +L  +++ +N+++ + 
Sbjct: 75  -----------------TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLP 116

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
                  + + L+E+ L  N L+ +         +L  ++L+ N L  +       L N+
Sbjct: 117 LGALR-GLGE-LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
             ++L  N +  I    F     L    L  N
Sbjct: 175 DTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 86.3 bits (214), Expect = 7e-19
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 12/189 (6%)

Query: 383 FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIK 442
              + + ++++     L     ++  + T       L+LS N +              + 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPKDTT------ILHLSENLLYTFSLATLMPYT-RLT 58

Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV 502
            L+L    + ++ V+        L  L L  N+++ L       L  L +L +  N +  
Sbjct: 59  QLNLDRAELTKLQVDGTLP---VLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTS 114

Query: 503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TII 561
           +      G+  LQ + L  NE+  L       + KL  L++++N L  LP  + +    +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 562 EKLDISYNQ 570
           + L +  N 
Sbjct: 175 DTLLLQENS 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 5e-12
 Identities = 41/195 (21%), Positives = 62/195 (31%), Gaps = 40/195 (20%)

Query: 39  QGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ 98
             +       L ++   L     +          L L     ++ +L   +   +  +  
Sbjct: 27  PDLPKD-TTILHLSENLLYTFSLATLMPYTRLTQLNLD--RAELTKLQ--VDGTLPVLG- 80

Query: 99  MTLDLSHNKLSVLNMATLYSNVTKLQHLG------TTILKDREKLLSNLETLLLRCNKIT 152
            TLDLSHN+L  L    L   +  L  L       T++     + L  L+ L L+ N++ 
Sbjct: 81  -TLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 153 DLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLY 212
            L   L                               LE L L  N +T+L   L   L 
Sbjct: 138 TLPPGLLTP-------------------------TPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 213 NLQELSLSFNKLQII 227
           NL  L L  N L  I
Sbjct: 173 NLDTLLLQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 3   LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGI--FN--SKLRELEITGKDLKF 58
           L LS N L   +        T+L  L    L   +L  +        L  L+++   L+ 
Sbjct: 36  LHLSENLLYTFS-LATLMPYTRLTQLN---LDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 59  IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
           + P     + A   L +  +  ++  LP G    +  +++  L L  N+L  L    L +
Sbjct: 92  L-PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQE--LYLKGNELKTLP-PGLLT 145

Query: 119 NVTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDLNGNLF 159
              KL+ L       T +       L NL+TLLL+ N +  +    F
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.6 bits (230), Expect = 7e-20
 Identities = 52/307 (16%), Positives = 113/307 (36%), Gaps = 50/307 (16%)

Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
            N    L +  + +  + +    ++T+L    +  N ++ +            L+ + +S
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPAHITTLV---IPDNNLTSLPALPPE------LRTLEVS 89

Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
            N L  +       L EL+  +     L ++        + +  + +  NQ+  +     
Sbjct: 90  GNQLTSL-PVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVL-- 139

Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
              P L +L + DN+L      + S +        L   NN +T+L        P  ++ 
Sbjct: 140 --PPGLQELSVSDNQLASLP-ALPSELC------KLWAYNNQLTSLPML-----PSGLQE 185

Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
           L +S+N++  +P    +     L KL+   N +  L A        L+ L +  N +  +
Sbjct: 186 LSVSDNQLASLPTLPSE-----LYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSL 236

Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEK 563
                +    L+ + +S N ++ L          L  L++  N+L  LP  +   +    
Sbjct: 237 ----PVLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSETT 288

Query: 564 LDISYNQ 570
           +++  N 
Sbjct: 289 VNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 60/366 (16%), Positives = 117/366 (31%), Gaps = 81/366 (22%)

Query: 134 REKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETL 193
           R  L +    L +  + +T L   L  H+   ++      +NN   +     L   L TL
Sbjct: 35  RACLNNGNAVLNVGESGLTTLPDCLPAHITTLVI-----PDNNLTSLPA---LPPELRTL 86

Query: 194 LLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSN 253
            +  N++T L   L   L  L   S     L  +                          
Sbjct: 87  EVSGNQLTSLP-VLPPGLLELSIFSNPLTHLPAL-------------------------- 119

Query: 254 EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNI 313
                      + L  L +  N + ++          L  +++  N+++ +         
Sbjct: 120 ----------PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPALPSE--- 162

Query: 314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
              L ++   NN L  +       L+EL+   +S N L S+ T      + +  +    N
Sbjct: 163 ---LCKLWAYNNQLTSL-PMLPSGLQELS---VSDNQLASLPTL----PSELYKLWAYNN 211

Query: 374 QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND 433
           ++  + P        L +L +  N+L      + S +        L +S N +T+L    
Sbjct: 212 RLTSL-PA---LPSGLKELIVSGNRLTSLP-VLPSELK------ELMVSGNRLTSLPML- 259

Query: 434 KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELL 493
               P  + SL +  N++  +P + +     S   + L+ N +      A   +      
Sbjct: 260 ----PSGLLSLSVYRNQLTRLPESLIH--LSSETTVNLEGNPLSERTLQALREITSAPGY 313

Query: 494 SLEHNN 499
           S     
Sbjct: 314 SGPIIR 319

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.6 bits (222), Expect = 6e-19
 Identities = 69/365 (18%), Positives = 130/365 (35%), Gaps = 51/365 (13%)

Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNL- 158
            L++  + L+ L    L +++T L  +    L     L   L TL +  N++T L     
Sbjct: 44  VLNVGESGLTTLP-DCLPAHITTL-VIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPP 101

Query: 159 -FRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQEL 217
               L         +N            L S L  L +  N++T L          LQEL
Sbjct: 102 GLLELSIF------SNPLTH-----LPALPSGLCKLWIFGNQLTSLP----VLPPGLQEL 146

Query: 218 SLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI 277
           S+S N+L  +        +  +L  L    +   S       L    + L+ L++ +N +
Sbjct: 147 SVSDNQLASLP------ALPSELCKLWAYNNQLTS-------LPMLPSGLQELSVSDNQL 193

Query: 278 KNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYN 337
            ++       L  L       N+++ +            LKE+ +S N L  +       
Sbjct: 194 ASLPT-LPSELYKLW---AYNNRLTSLPALP------SGLKELIVSGNRLTSL-PVLPSE 242

Query: 338 LKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
           LKEL    +S N L S+        + +L++ +  NQ+  + P + ++L +   ++L+ N
Sbjct: 243 LKELM---VSGNRLTSLP----MLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN 294

Query: 398 KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN 457
            L +  L     ITS        +  +        + +   +      +     +  P +
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD 354

Query: 458 FLQTF 462
               F
Sbjct: 355 RWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 62/389 (15%), Positives = 129/389 (33%), Gaps = 60/389 (15%)

Query: 183 REKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQL 242
           R  L +    L +  + +T L   L  H+     L +  N L  +        +  +L+ 
Sbjct: 35  RACLNNGNAVLNVGESGLTTLPDCLPAHI---TTLVIPDNNLTSLP------ALPPELRT 85

Query: 243 LEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS 302
           LE+S +   S   P       L  L   +    ++  +        + L  + +  N+++
Sbjct: 86  LEVSGNQLTS--LPVLP--PGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT 134

Query: 303 KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL 362
            +            L+E+ +S+N L  +       L +L       N L S+        
Sbjct: 135 SLPVLPPG------LQELSVSDNQLASL-PALPSELCKLW---AYNNQLTSLP----MLP 180

Query: 363 NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
           + +  + +S NQ+  + P        L KL   +N+L        +  +  +    L +S
Sbjct: 181 SGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP----ALPSGLKE---LIVS 229

Query: 423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDAT 482
            N +T+L        P  +K L +S NR+  +P+         L  L +  N++  L   
Sbjct: 230 GNRLTSL-----PVLPSELKELMVSGNRLTSLPMLP-----SGLLSLSVYRNQLTRLPE- 278

Query: 483 AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN 542
           +  +L     ++LE N ++    +    + +            M          +     
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA----PRETRAL 334

Query: 543 ISHNRLRSLPRDVFSNTIIEKLDISYNQD 571
                   +P         ++  +   +D
Sbjct: 335 HLAAADWLVPAREGEPAPADRWHMFGQED 363

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.1 bits (200), Expect = 3e-16
 Identities = 50/279 (17%), Positives = 96/279 (34%), Gaps = 56/279 (20%)

Query: 319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL------NNMLNIV--- 369
           E R     ++ + +        LN   +  + L ++      ++      +N L  +   
Sbjct: 23  ESRGRAAVVQKMRACLNNGNAVLN---VGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL 79

Query: 370 --------LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-----NLNVFSN-ITSKQT 415
                   +S NQ+  + P     L  L         L         L +F N +TS   
Sbjct: 80  PPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 138

Query: 416 PM----NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
                  L++S+N + +L        P  +  L   NN++  +P+         L++L +
Sbjct: 139 LPPGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLTSLPMLP-----SGLQELSV 188

Query: 472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531
             N++  L       L  L   +    ++             L+ + +S N ++ L    
Sbjct: 189 SDNQLASLPTL-PSELYKLWAYNNRLTSLPA-------LPSGLKELIVSGNRLTSLPVL- 239

Query: 532 FYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
                +L+ L +S NRL SLP      + +  L +  NQ
Sbjct: 240 ---PSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ 272

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 63/391 (16%), Positives = 122/391 (31%), Gaps = 103/391 (26%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGI--FNSKLRELEITGKDLKFI 59
            L++  + L+ L    L +++T L      ++  + L  +     +LR LE++G  L  +
Sbjct: 44  VLNVGESGLTTLP-DCLPAHITTL------VIPDNNLTSLPALPPELRTLEVSGNQLTSL 96

Query: 60  DPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYS 118
                       +L+      T +  LPSGL           L +  N+L+ L       
Sbjct: 97  PVL----PPGLLELSIFSNPLTHLPALPSGL---------CKLWIFGNQLTSL------- 136

Query: 119 NVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNED 178
                             L   L+ L +  N++  L                        
Sbjct: 137 ----------------PVLPPGLQELSVSDNQLASLPA---------------------- 158

Query: 179 QVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFE 238
                  L S L  L    N++T L          LQELS+S N+L  +        +  
Sbjct: 159 -------LPSELCKLWAYNNQLTSLPMLPS----GLQELSVSDNQLASLP------TLPS 201

Query: 239 KLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEY 298
           +L  L    +   S       L    + L+ L +  N + ++        + L  + +  
Sbjct: 202 ELYKLWAYNNRLTS-------LPALPSGLKELIVSGNRLTSLPV----LPSELKELMVSG 250

Query: 299 NKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS 358
           N+++ +            L  + +  N L  +  ++  +L    T+ L  N L      +
Sbjct: 251 NRLTSLPMLP------SGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQA 303

Query: 359 FKNLNNMLNIVLSFNQIKYIYPNAFVNLPNL 389
            + + +         +      +A      L
Sbjct: 304 LREITSAPGYSGPIIRFDMAGASAPRETRAL 334

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS 353
           + L  N+ + +      F    +L++I  SNN +  IE   F     +N I L+ N L++
Sbjct: 37  LRLNNNEFTVLEATGI-FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 354 IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSK 413
           ++   FK L ++  ++L  N+I  +  ++F+ L ++  L L DN++       F  + S 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155

Query: 414 QTPMNLNLSNN 424
            T   LNL  N
Sbjct: 156 ST---LNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 27/121 (22%), Positives = 53/121 (43%)

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P Y   L L+NN    +    +      LRK+    N+I  ++  AF     +  + L  
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
           N +  V  + F G+ +L+ + L  N I+ +  + F     +R+L++  N++ ++    F 
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 558 N 558
            
Sbjct: 151 T 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 34/159 (21%)

Query: 367 NIVLSFNQIKYIYPNA-FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425
            + L+ N+   +     F  LP L K++  +NK+ D     F   +              
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG------------- 82

Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNEIKHLDATA 483
                          +  + L++NR++ V       F    SL+ L L  N I  +   +
Sbjct: 83  ---------------VNEILLTSNRLENVQHK---MFKGLESLKTLMLRSNRITCVGNDS 124

Query: 484 FGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
           F  L  + LLSL  N I  V    F  + +L  ++L  N
Sbjct: 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
           K L  L  +   NN I +I   +    + +N I L  N++  + + +F   +   LK + 
Sbjct: 54  KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK-GLES-LKTLM 111

Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN 373
           L +N +  + +D+F  L  +  ++L  N + ++   +F  L+++  + L  N
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 72/200 (36%)

Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLF 159
            L L++N+ +VL    ++                    L  L  +    NKITD+    F
Sbjct: 36  ELRLNNNEFTVLEATGIFKK------------------LPQLRKINFSNNKITDIEEGAF 77

Query: 160 RHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSL 219
                                       S +  +LL  N++ ++   +F+ L +L+ L L
Sbjct: 78  EGA-------------------------SGVNEILLTSNRLENVQHKMFKGLESLKTLML 112

Query: 220 SFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN 279
             N++    + ++ F                             L+++  L++ +N I  
Sbjct: 113 RSNRIT--CVGNDSFI---------------------------GLSSVRLLSLYDNQITT 143

Query: 280 IRNYSLYNLTSLNYINLEYN 299
           +   +   L SL+ +NL  N
Sbjct: 144 VAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 22/132 (16%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFN--SKLRELEITGKD 55
            L L++N+ +VL    ++  + +L+ +       +++     G F   S + E+ +T   
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKIN---FSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 56  LKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
           L+ +    F  +++   L  L + + +I  + +  F  + ++    L L  N+++ +   
Sbjct: 93  LENVQHKMFKGLES---LKTLMLRSNRITCVGNDSFIGLSSVR--LLSLYDNQITTVAPG 147

Query: 115 TLYSNVTKLQHL 126
                +  L  L
Sbjct: 148 AF-DTLHSLSTL 158

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 54/263 (20%), Positives = 103/263 (39%), Gaps = 23/263 (8%)

Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
            +      L+   +TD        L ++ ++  + + ++ ++           +  L ++
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLN 76

Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
                 N+        NL  L WL +D N +K++ +  L +L  L  ++LE+N IS I+ 
Sbjct: 77  G-----NKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING 129

Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
                    +L+ + L NN +  I       L +L+T++L  N +  I       L  + 
Sbjct: 130 ----LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQ 181

Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
           N+ LS N I  +       L NL  L+L   +  +  +N  SN+    T  N + S    
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

Query: 427 TNLYENDKKQAPIYIKSLDLSNN 449
             + ++   + P     L    N
Sbjct: 240 EIISDDGDYEKPNVKWHLPEFTN 262

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 23/239 (9%)

Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
                     +   ++ +        L S++ I    + I  +            + ++ 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG----IQYLPNVTKLF 74

Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
           L+ N L  I+     NLK L  + L  N +K +  +S K+L  + ++ L  N I  I  N
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--N 128

Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
             V+LP L  L L +NK+ D  + V S +T   T   L+L +N I+++           +
Sbjct: 129 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDT---LSLEDNQISDIVPLAG---LTKL 180

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
           ++L LS N I ++          +L  L L   E  +       NL V   +     ++
Sbjct: 181 QNLYLSKNHISDLRALAGLK---NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 59/273 (21%), Positives = 112/273 (41%), Gaps = 30/273 (10%)

Query: 299 NKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS 358
             I +I    F  +      +  L    +      T   L  ++ I  + + +KS++   
Sbjct: 12  TPIKQI----FSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--G 63

Query: 359 FKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPM 417
            + L N+  + L+ N++  I P    NL NL  L L +NK+KD  +L     + S     
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKS----- 116

Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEI 476
            L+L +N I+++           ++SL L NN+I ++  ++ L      L  L L+ N+I
Sbjct: 117 -LSLEHNGISDINGLVHLPQ---LESLYLGNNKITDITVLSRLT----KLDTLSLEDNQI 168

Query: 477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF 536
             +       L  L+ L L  N+I+ +  R   G+ NL +++L   E             
Sbjct: 169 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 537 KLRILNISHNRLRSLPRDVFSNTIIEKLDISYN 569
               +  +   L + P  +  +   EK ++ ++
Sbjct: 225 VPNTVKNTDGSLVT-PEIISDDGDYEKPNVKWH 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 52/267 (19%), Positives = 108/267 (40%), Gaps = 25/267 (9%)

Query: 315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
               +I    + +      T  +L  + T++     + +I+    + LNN++ + L  NQ
Sbjct: 19  ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQ 74

Query: 375 IKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYITNLYEND 433
           I  + P    NL  + +L+L  N LK+   +    +I        L+L++  IT++    
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIK------TLDLTSTQITDVTPLA 126

Query: 434 KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELL 493
                  ++ L L  N+I  +          +L+ L +   ++  L      NL  L  L
Sbjct: 127 GLSN---LQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 494 SLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR 553
             + N I+ +       +PNL  + L  N+IS ++      +  L I+ +++  + + P 
Sbjct: 179 KADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234

Query: 554 DVFSNTIIEKLDISYNQDKIRPGRESN 580
              +N ++  +    +   I P   S+
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.5 bits (199), Expect = 7e-17
 Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 23/246 (9%)

Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
           L  + TL      +T + G   ++L NL  L L  N++  +           K+  LE+S
Sbjct: 40  LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLA----PLKNLTKITELELS 93

Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
            +   +           L +++ L + +  I ++    L  L++L  + L+ N+I+ I  
Sbjct: 94  GNPLKNVSAI-----AGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP 146

Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
                     L+ + + N  +  +      NL +L T+    N +  I  +   +L N++
Sbjct: 147 ----LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLI 198

Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
            + L  NQI  + P    N  NL  + L +  + +  +   +N+         + +    
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP 256

Query: 427 TNLYEN 432
             + +N
Sbjct: 257 ATISDN 262

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 25/224 (11%)

Query: 92  KIENIEQMT----LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL--LSNLETLL 145
            IE ++ +     L+L  N+++ L      + +T+L  L    LK+   +  L +++TL 
Sbjct: 55  TIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITEL-ELSGNPLKNVSAIAGLQSIKTLD 113

Query: 146 LRCNKITDLNGNLFRHLQK-SIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN 204
           L   +ITD+       L    ++    N   N   ++     L+NL+ L +   +++DL 
Sbjct: 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAG----LTNLQYLSIGNAQVSDLT 167

Query: 205 GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNL 264
                +L  L  L    NK+  I   ++       L  + +      +N+        N 
Sbjct: 168 P--LANLSKLTTLKADDNKISDISPLAS----LPNLIEVHLK-----NNQISDVSPLANT 216

Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
           + L  + + N  I N   +   NL   N +              
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 58/284 (20%), Positives = 110/284 (38%), Gaps = 31/284 (10%)

Query: 44  SKLRELEITGKDLKFIDPSAFDNIDACYDLT-LKITNTQIEELPSGLFDKIENIEQMTLD 102
             +  L   G  +  I+      +    +L  L++ + QI +L       +  I    L+
Sbjct: 41  DGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDNQITDLAP--LKNLTKIT--ELE 91

Query: 103 LSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL--LSNLETLLLRCNKITDLNGNLFR 160
           LS N L  ++      ++  L  L +T + D   L  LSNL+ L L  N+IT+++     
Sbjct: 92  LSGNPLKNVSAIAGLQSIKTL-DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LA 148

Query: 161 HLQK-SIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSL 219
            L     +       ++   +++    LS L TL    NKI+D++      L NL E+ L
Sbjct: 149 GLTNLQYLSIGNAQVSDLTPLAN----LSKLTTLKADDNKISDISP--LASLPNLIEVHL 202

Query: 220 SFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN 279
             N++  +   +N       L ++ ++     +    Y       N ++       +   
Sbjct: 203 KNNQISDVSPLAN----TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK-----GPSGAP 253

Query: 280 IRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
           I   ++ +  +    NL +N  S I+N  + FN     K   + 
Sbjct: 254 IAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVP 297

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.6 bits (206), Expect = 4e-17
 Identities = 57/309 (18%), Positives = 105/309 (33%), Gaps = 23/309 (7%)

Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
                     +   ++ +        L S++ I    + I  +            + ++ 
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG----IQYLPNVTKLF 71

Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
           L+ N L  I+     NLK L  + L  N +K +  +S K+L  + ++ L  N I  I  N
Sbjct: 72  LNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--N 125

Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI 441
             V+LP L  L L +NK+ D  + V S +T   T   L+L +N I+++           +
Sbjct: 126 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDT---LSLEDNQISDIVPLAG---LTKL 177

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
           ++L LS N I ++          +L  L L   E  +       NL V   +     ++ 
Sbjct: 178 QNLYLSKNHISDLRALAGLK---NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTII 561
                +  G      +     E +      FY    +       +   + P         
Sbjct: 235 TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

Query: 562 EKLDISYNQ 570
           +        
Sbjct: 295 DVDGTVIKT 303

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 5e-11
 Identities = 70/417 (16%), Positives = 131/417 (31%), Gaps = 65/417 (15%)

Query: 28  LGTTILKGDQLQGIFN----SKLRELEITGKDLKFIDP-SAFDNIDACYDLTLKITNTQI 82
           +G TI     ++ IF     ++  +  +  K +      +  ++ID      +   N+ I
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSID-----QIIANNSDI 55

Query: 83  EELPSGLFDKIENIEQMT----LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL- 137
           +         ++ I+ +     L L+ NKL+ +   T   N+  L  L    +KD   L 
Sbjct: 56  K--------SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWL-FLDENKIKDLSSLK 106

Query: 138 -LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
            L  L++L L  N I+D+NG                              L  LE+L L 
Sbjct: 107 DLKKLKSLSLEHNGISDINGL---------------------------VHLPQLESLYLG 139

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
            NKITD+       L  L  LSL  N++  I   +       KLQ L +S      N   
Sbjct: 140 NNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAG----LTKLQNLYLS-----KNHIS 188

Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316
                  L  L+ L + +    N       NL   N +      +          +  K 
Sbjct: 189 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK- 247

Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
              ++          S  FY    +      ++   +        ++  ++  +   +++
Sbjct: 248 -PNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVE 306

Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND 433
                     P       +    +    + ++  T   +  +  L   +     E  
Sbjct: 307 AGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKT 363

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 5e-17
 Identities = 57/316 (18%), Positives = 118/316 (37%), Gaps = 35/316 (11%)

Query: 143 TLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITD 202
           +     N I+    + F    K   +A    N NE     +E L++    L L    ++ 
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 203 LNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNK 262
           L  NL      +  L ++ N L  +       ++   L+ L+   +  ++       L +
Sbjct: 74  LPDNLPP---QITVLEITQNALISLP------ELPASLEYLDACDNRLST-------LPE 117

Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
              +L+ L +DNN +  +          L YIN + N+++ +            L+ + +
Sbjct: 118 LPASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPELP------TSLEVLSV 167

Query: 323 SNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLN---NMLNIVLSFNQIKYIY 379
            NN L  +  +   +L+ L+   +S NLL+S+     +N +     +      N+I +I 
Sbjct: 168 RNNQLTFL-PELPESLEALD---VSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI- 222

Query: 380 PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPI 439
           P   ++L     + L+DN L        S  T++       +  +   +  +N   +   
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS-DGQQNTLHRPLA 281

Query: 440 YIKSLDLSNNRIQEVP 455
              +     N+  +V 
Sbjct: 282 DAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.2 bits (200), Expect = 2e-16
 Identities = 51/291 (17%), Positives = 102/291 (35%), Gaps = 65/291 (22%)

Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS----NNYLELIESDTFYNLKELN 342
           N  SL+  N  YN IS  + + F  +   + ++  L     N  + L++        EL 
Sbjct: 9   NNFSLS-QNSFYNTISGTYADYF--SAWDKWEKQALPGENRNEAVSLLKECLINQFSELQ 65

Query: 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402
              L+   L S+                         P+     P +  L++  N L   
Sbjct: 66  ---LNRLNLSSL-------------------------PDNL--PPQITVLEITQNALISL 95

Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
              + +++        L+  +N ++ L      + P  +K LD+ NN++  +P       
Sbjct: 96  -PELPASLE------YLDACDNRLSTL-----PELPASLKHLDVDNNQLTMLPELP---- 139

Query: 463 ADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
              L  +  D N++  L          LE+LS+ +N +  + +       +L+ +D+S N
Sbjct: 140 -ALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFLPE----LPESLEALDVSTN 190

Query: 523 EISMLT---GEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
            +  L        +            NR+  +P ++ S      + +  N 
Sbjct: 191 LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 5e-11
 Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 33/275 (12%)

Query: 260 LNKNLNTLEWLAMDNNNIKNIRNY-SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLK 318
                +  E  A+   N     +      +   + + L    +S + +NL       ++ 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP-----PQIT 83

Query: 319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI 378
            + ++ N L  +  +   +L+ L+      N L ++      +L ++    +  NQ+  +
Sbjct: 84  VLEITQNALISL-PELPASLEYLD---ACDNRLSTL-PELPASLKHLD---VDNNQLTML 135

Query: 379 YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAP 438
            P        L  ++  +N+L           TS +    L++ NN +T L E      P
Sbjct: 136 -PEL---PALLEYINADNNQLTMLP----ELPTSLEV---LSVRNNQLTFLPE-----LP 179

Query: 439 IYIKSLDLSNNRIQEVPVNF--LQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE 496
             +++LD+S N ++ +P          ++        N I H+      +LD    + LE
Sbjct: 180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILE 238

Query: 497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ 531
            N ++  ++ +                 SM  G+Q
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 9e-09
 Identities = 59/362 (16%), Positives = 122/362 (33%), Gaps = 70/362 (19%)

Query: 1   MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFID 60
           M++ L  N    L+  + Y+ ++       +     + Q +      E       +  + 
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEA------VSLLK 54

Query: 61  PSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVL-----NMAT 115
               +         L++    +  LP  L  +I       L+++ N L  L     ++  
Sbjct: 55  ECLINQFS-----ELQLNRLNLSSLPDNLPPQIT-----VLEITQNALISLPELPASLEY 104

Query: 116 LYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNN 175
           L +   +L  L         +L ++L+ L +  N++T L   L   L+        +NN 
Sbjct: 105 LDACDNRLSTL--------PELPASLKHLDVDNNQLTMLP-ELPALLEYINA----DNN- 150

Query: 176 NEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFD 235
              Q++   +L ++LE L +R N++T L         +L+ L +S N L+          
Sbjct: 151 ---QLTMLPELPTSLEVLSVRNNQLTFLPELPE----SLEALDVSTNLLE---------- 193

Query: 236 VFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYIN 295
                    +               + +  T  +     N I +I   ++ +L     I 
Sbjct: 194 --------SLPAVPVR--------NHHSEETEIFFRCRENRITHIPE-NILSLDPTCTII 236

Query: 296 LEYNKIS-KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI 354
           LE N +S +I  +L            R+  +  +  ++     L +  T     N    +
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDV 296

Query: 355 KT 356
             
Sbjct: 297 SQ 298

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 77.0 bits (190), Expect = 5e-16
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
           E L + +  +  + + +   LT L ++NL+YN++  +   +F       L  + L+NN L
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD--LTELGTLGLANNQL 95

Query: 328 ELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP 387
             +    F +L +L+ + L  N LKS+ +  F  L  +  + L+ NQ++ I   AF  L 
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155

Query: 388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
           NL  L L  N+L+      F  +   QT   + L  N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQT---ITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 31/184 (16%)

Query: 191 ETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLF 250
           E L L+   +  L+   FR L  L  L+L +N+LQ +   + VFD               
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS--AGVFD--------------- 80

Query: 251 NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH 310
                       +L  L  L + NN + ++      +LT L+ + L  N++  + + +F 
Sbjct: 81  ------------DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128

Query: 311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
                 LKE+RL+ N L+ I +  F  L  L T++LS N L+S+   +F  L  +  I L
Sbjct: 129 RLTK--LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

Query: 371 SFNQ 374
             NQ
Sbjct: 187 FGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 70.9 bits (174), Expect = 7e-14
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 11/159 (6%)

Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
            + L    +  +    F  L  L  L+L  N+L+  +  VF ++T   T   L L+NN +
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT---LGLANNQL 95

Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS---LRKLYLDFNEIKHLDATA 483
            +L           +  L L  N+++ +P      F D    L++L L+ N+++ + A A
Sbjct: 96  ASL-PLGVFDHLTQLDKLYLGGNQLKSLPSG---VF-DRLTKLKELRLNTNQLQSIPAGA 150

Query: 484 FGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
           F  L  L+ LSL  N +  V    F  +  LQ I L  N
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 5/130 (3%)

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
           K +D     +  VP            KL L    +  L    F  L  L  L+L++N + 
Sbjct: 17  KEVDCQGKSLDSVPSGI----PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ 72

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TI 560
            +    F  +  L  + L+ N+++ L    F    +L  L +  N+L+SLP  VF   T 
Sbjct: 73  TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132

Query: 561 IEKLDISYNQ 570
           +++L ++ NQ
Sbjct: 133 LKELRLNTNQ 142

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.6 bits (142), Expect = 9e-10
 Identities = 46/205 (22%), Positives = 73/205 (35%), Gaps = 61/205 (29%)

Query: 101 LDLSHNKLSVLNMATLYSNVTKLQHLG------TTILKDREKLLSNLETLLLRCNKITDL 154
           LDL    L+ L+    +  +TKL  L        T+       L+ L TL L  N++  L
Sbjct: 40  LDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 155 NGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNL 214
              +F HL                         + L+ L L  N++  L   +F  L  L
Sbjct: 99  PLGVFDHL-------------------------TQLDKLYLGGNQLKSLPSGVFDRLTKL 133

Query: 215 QELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDN 274
           +EL L+ N+LQ I   +  FD                            L  L+ L++  
Sbjct: 134 KELRLNTNQLQSIP--AGAFD---------------------------KLTNLQTLSLST 164

Query: 275 NNIKNIRNYSLYNLTSLNYINLEYN 299
           N ++++ + +   L  L  I L  N
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 2/141 (1%)

Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK 477
            L+L +  +  L  +   +    +  L+L  N++Q +           L  L L  N++ 
Sbjct: 39  KLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLA 96

Query: 478 HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFK 537
            L    F +L  L+ L L  N +  +    F  +  L+ + L+ N++  +    F     
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156

Query: 538 LRILNISHNRLRSLPRDVFSN 558
           L+ L++S N+L+S+P   F  
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 17/132 (12%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNS--KLRELEITGKD 55
            L+L +N+L  L+ A ++ ++T+L  LG   L  +QL     G+F+   +L +L + G  
Sbjct: 63  WLNLDYNQLQTLS-AGVFDDLTELGTLG---LANNQLASLPLGVFDHLTQLDKLYLGGNQ 118

Query: 56  LKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKL-SVLNMA 114
           LK +    FD +    +L L     Q++ +P+G FDK+ N++  TL LS N+L SV + A
Sbjct: 119 LKSLPSGVFDRLTKLKELRLN--TNQLQSIPAGAFDKLTNLQ--TLSLSTNQLQSVPHGA 174

Query: 115 TLYSNVTKLQHL 126
             +  + KLQ +
Sbjct: 175 --FDRLGKLQTI 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 77.0 bits (190), Expect = 6e-16
 Identities = 41/257 (15%), Positives = 84/257 (32%), Gaps = 24/257 (9%)

Query: 193 LLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNS 252
            + R   I  +  +    L N  + +L    +  +            +Q      S   S
Sbjct: 2   SIQRPTPINQVFPD--PGLANAVKQNLGKQSVTDLVSQKE----LSGVQNFNGDNSNIQS 55

Query: 253 NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFN 312
                    +    L+ L + +N I ++    L +LT L  +++  N++  ++       
Sbjct: 56  LAGM-----QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP---- 104

Query: 313 IHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF 372
               L  + L NN L   +S    +LK L  +++  N LKSI       L+ +  + L  
Sbjct: 105 -SACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHG 159

Query: 373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEN 432
           N+I          L  +  +DL   K  +  +     +    T  + +        +   
Sbjct: 160 NEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNG 217

Query: 433 DKKQAPIYIKSLDLSNN 449
                   +  L +  +
Sbjct: 218 GSYVDGCVLWELPVYTD 234

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 22/222 (9%)

Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMN 418
             L N +   L    +  +       L  +   +  ++ ++    +  F+N+        
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAGMQFFTNLKE------ 67

Query: 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478
           L+LS+N I++L      +    ++ L ++ NR++ +           L +L+LD NE++ 
Sbjct: 68  LHLSHNQISDL---SPLKDLTKLEELSVNRNRLKNLNGIPSAC----LSRLFLDNNELRD 120

Query: 479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKL 538
               +  +L  LE+LS+ +N +  +       +  L+++DL  NEI+   G       K+
Sbjct: 121 T--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKV 174

Query: 539 RILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESN 580
             ++++  +  + P        I       +   I P   SN
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISN 216

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 42/204 (20%), Positives = 87/204 (42%), Gaps = 25/204 (12%)

Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYIT 427
           +     I  ++P+    L N VK +L    + D  +    S + +       N  N+ I 
Sbjct: 3   IQRPTPINQVFPDP--GLANAVKQNLGKQSVTDLVSQKELSGVQN------FNGDNSNIQ 54

Query: 428 NLYENDKKQAPIYIKSLDLSNNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDATAFGN 486
           +L      Q    +K L LS+N+I ++ P+  L      L +L ++ N +K+L+      
Sbjct: 55  SL---AGMQFFTNLKELHLSHNQISDLSPLKDLT----KLEELSVNRNRLKNLNGIPSAC 107

Query: 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
              L  L L++N +      + I + NL+I+ +  N++  +      F  KL +L++  N
Sbjct: 108 ---LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGN 160

Query: 547 RLRSLPRDVFSNTIIEKLDISYNQ 570
            + +    +     +  +D++  +
Sbjct: 161 EITNTG-GLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 51/242 (21%), Positives = 92/242 (38%), Gaps = 27/242 (11%)

Query: 138 LSNLETLLLRCNKITDLNG-NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
           L+N     L    +TDL        +Q         +N+N   ++  +   +NL+ L L 
Sbjct: 18  LANAVKQNLGKQSVTDLVSQKELSGVQNFNG-----DNSNIQSLAGMQF-FTNLKELHLS 71

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
            N+I+DL+    + L  L+ELS++ N+L+ +              L  +      +NE  
Sbjct: 72  HNQISDLSP--LKDLTKLEELSVNRNRLKNLN-------GIPSACLSRLFLD---NNELR 119

Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316
                 +L  LE L++ NN +K+I    L  L+ L  ++L  N+I+            K+
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG----LTRLKK 173

Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
           +  I L+              L   NT+        S    S  N  + ++  + +    
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS--NGGSYVDGCVLWELPV 231

Query: 377 YI 378
           Y 
Sbjct: 232 YT 233

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.0 bits (185), Expect = 7e-15
 Identities = 45/330 (13%), Positives = 99/330 (30%), Gaps = 49/330 (14%)

Query: 263 NLNTLEWLAM-DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
           + +  E L    +  ++   +  L         +      +    N          +   
Sbjct: 10  HSSGRENLYFQGSTALRPYHD-VLSQWQRHYNADRNRWHSAWRQANS------NNPQIET 62

Query: 322 LSNNYL----ELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
            +   L    +L+E  T      L    L    L          L+++ ++ +    +  
Sbjct: 63  RTGRALKATADLLEDATQPGRVALE---LRSVPLPQF-PDQAFRLSHLQHMTIDAAGLME 118

Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN--------YITNL 429
           + P+       L  L L  N L+       +++   +    L++            + + 
Sbjct: 119 L-PDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRE---LSIRACPELTELPEPLAST 173

Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDV 489
             + + Q  + ++SL L    I+ +P +       +L+ L +  + +  L      +L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSPLSALGPA-IHHLPK 230

Query: 490 LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN--------EISMLTGEQFYFSFKLRIL 541
           LE L L            F G   L+ + L           +I  LT        +L  L
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT--------QLEKL 282

Query: 542 NISHN-RLRSLPRDVFSNTIIEKLDISYNQ 570
           ++     L  LP  +        + +  + 
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 49/378 (12%), Positives = 112/378 (29%), Gaps = 81/378 (21%)

Query: 187 LSNLETLLL-RCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
            S  E L       +   +  L            +       + NSN        Q+   
Sbjct: 11  SSGRENLYFQGSTALRPYHDVL-SQWQRHYNADRNRWHSAWRQANSN------NPQIETR 63

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
           +            + +        L + +  +    +   + L+ L ++ ++   + ++ 
Sbjct: 64  TGRALK--ATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELP 120

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY-NLLKSI--------KT 356
           + +  F     L+ + L+ N L  +   +  +L  L  +++     L  +         +
Sbjct: 121 DTMQQF---AGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 357 TSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP 416
              + L N+ ++ L +  I+ + P +  NL NL  L ++++ L         ++   +  
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEE- 233

Query: 417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL-DFNE 475
             L+L                             ++  P  F       L++L L D + 
Sbjct: 234 --LDLRGC------------------------TALRNYPPIFGG--RAPLKRLILKDCSN 265

Query: 476 IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS 535
           +  L       L  LE L L                    +  L  + I+ L        
Sbjct: 266 LLTLPLD-IHRLTQLEKLDLRGCV---------------NLSRLP-SLIAQLP------- 301

Query: 536 FKLRILNISHNRLRSLPR 553
               I+ +  +    L +
Sbjct: 302 -ANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 5e-12
 Identities = 44/329 (13%), Positives = 107/329 (32%), Gaps = 54/329 (16%)

Query: 138 LSNLETLLL-RCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
            S  E L       +   +  L +       +   N + N    + R+   +N +     
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQ------WQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 197 CNKITDLNGNLFR-HLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEF 255
              +      L          L L    L   +     F     LQ + I  +     E 
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAFR-LSHLQHMTIDAAGLM--EL 119

Query: 256 PYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEY-NKISKIHNNLFHFNIH 314
           P  +  +    LE L +  N ++ +   S+ +L  L  +++    +++++   L   +  
Sbjct: 120 PDTM--QQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 315 ------KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
                   L+ +RL    +  +   +  NL+ L ++ +  + L ++   +  +L  +  +
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEEL 234

Query: 369 VLS-FNQIKYIYPNAFVNLPNLVKLDLQDN--------------KLKDFNL--------- 404
            L     ++   P  F     L +L L+D               +L+  +L         
Sbjct: 235 DLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 405 -NVFSNITSKQTPMNLNLSNNYITNLYEN 432
            ++ + + +      + +  +    L ++
Sbjct: 294 PSLIAQLPANCI---ILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 46/335 (13%), Positives = 105/335 (31%), Gaps = 55/335 (16%)

Query: 79  NTQIEELPSGLFD----KIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDR 134
           +T +      L         +  +          +   + T       L+     +    
Sbjct: 22  STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR--ALKATADLLEDAT 79

Query: 135 EKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLL 194
           +        L LR   +       FR                          LS+L+ + 
Sbjct: 80  QP---GRVALELRSVPLPQFPDQAFR--------------------------LSHLQHMT 110

Query: 195 LRCNKITDLNGNLFRHLYNLQELSLSFNKLQII-----ELNS-NVFDVFEKLQLLEISFS 248
           +    + +L   +      L+ L+L+ N L+ +      LN      +    +L E+   
Sbjct: 111 IDAAGLMELPDTMQ-QFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169

Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
           L +++    +   + L  L+ L ++   I+++   S+ NL +L  + +  + +S +   +
Sbjct: 170 LASTDASGEH---QGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGPAI 225

Query: 309 FHFNIHKRLKEIRLS-NNYLELIESDTFYNLKELNTITLS-YNLLKSIKTTSFKNLNNML 366
            H     +L+E+ L     L       F     L  + L   + L ++       L  + 
Sbjct: 226 HHL---PKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLE 280

Query: 367 NIVLSFN-QIKYIYPNAFVNLPNLVKLDLQDNKLK 400
            + L     +  + P+    LP    + +  +   
Sbjct: 281 KLDLRGCVNLSRL-PSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 47/254 (18%), Positives = 84/254 (33%), Gaps = 60/254 (23%)

Query: 74  TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVL--------NMATLY-SNVTKLQ 124
            + I    + ELP  +  +   +E  TL L+ N L  L         +  L      +L 
Sbjct: 108 HMTIDAAGLMELPDTMQ-QFAGLE--TLTLARNPLRALPASIASLNRLRELSIRACPELT 164

Query: 125 HL----GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV 180
            L     +T      + L NL++L L    I  L  ++                      
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN-------------------- 204

Query: 181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLS-FNKLQIIELNSNVFDVFEK 239
                 L NL++L +R + ++ L   +  HL  L+EL L     L+          +F  
Sbjct: 205 ------LQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCTALRNYP------PIFGG 251

Query: 240 LQLLEISFSLFNSNEF---PYYILNKNLNTLEWLAMDNNNIKNIRN--YSLYNLTSLNYI 294
              L+    L + +     P  I    L  LE L +      N+      +  L +   I
Sbjct: 252 RAPLK-RLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCV--NLSRLPSLIAQLPANCII 306

Query: 295 NLEYNKISKIHNNL 308
            +  +  +++  + 
Sbjct: 307 LVPPHLQAQLDQHR 320

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 2e-14
 Identities = 48/247 (19%), Positives = 80/247 (32%), Gaps = 18/247 (7%)

Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
            Y LK ++T          IK+ S K L                     + +  L +L L
Sbjct: 46  EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAA---RIPSRILFGALRVLGISGLQELTL 102

Query: 395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKK---QAPIYIKSLDLSNNRI 451
           ++ ++           T       LNL N           +        +K L ++    
Sbjct: 103 ENLEVTGTAPPPLLEATGPDL-NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 452 QEVPVNFLQTFADSLRKLYLDFNEIK-------HLDATAFGNLDVLELLSLEHNNIAVVV 504
                  ++ F  +L  L L  N           L    F  L VL L +      + V 
Sbjct: 162 LNFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 505 KRTFIGMPNLQIIDLSFNEIS-MLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEK 563
                    LQ +DLS N +          +  +L  LN+S   L+ +P+ + +   +  
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK--LSV 278

Query: 564 LDISYNQ 570
           LD+SYN+
Sbjct: 279 LDLSYNR 285

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 5e-14
 Identities = 45/280 (16%), Positives = 86/280 (30%), Gaps = 24/280 (8%)

Query: 213 NLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS--LFNSNEFPYYILNKNLNTLEWL 270
             + L     ++          D+ + L L  ++       S      +    ++ L+ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 271 AMDNNNI-----KNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
            ++N  +       +   +  +L  LN  N+ +         L  + +   LK + ++  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW-LKPGLKVLSIAQA 159

Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKT-------TSFKNLNNMLNIVLSFNQIKYI 378
           +      +       L+T+ LS N     +          F  L  +            +
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 379 YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAP 438
                     L  LDL  N L+D       +  S+    +LNLS   +  + +      P
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN--SLNLSFTGLKQVPKG----LP 273

Query: 439 IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478
             +  LDLS NR+   P          +  L L  N    
Sbjct: 274 AKLSVLDLSYNRLDRNP---SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.7 bits (160), Expect = 8e-12
 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 32/284 (11%)

Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKL----QL 242
             +LE LL R     D   +L +    ++ LSL    ++   + S +     ++     L
Sbjct: 42  GRSLEYLLKR----VDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 243 LEISFS-LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY----SLYNLTSLNYINLE 297
            E++   L  +   P  +L      L  L + N +      +      +    L  +++ 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 298 YNKISKIHNNLFHFNIHKRLKEIRLSNNYL----ELIESDTFYNLKELNTITLSYNLLKS 353
                          +   L  + LS+N       LI +        L  + L    +++
Sbjct: 158 QAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 354 IKTTSFKNLNNMLNIV---LSFNQIKYI-YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
                       + +    LS N ++      +      L  L+L    LK     + + 
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK 275

Query: 410 ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQE 453
           ++       L+LS N +      D+      + +L L  N   +
Sbjct: 276 LSV------LDLSYNRLDRNPSPDELPQ---VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.7 bits (160), Expect = 8e-12
 Identities = 44/300 (14%), Positives = 88/300 (29%), Gaps = 40/300 (13%)

Query: 260 LNKNLNTLEWLAMDNNNIKNIRNYS-LYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRL 317
           L     +LE+L    +   ++  ++ +    SL  + +   +I  +I            L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 318 KEIRLSNNYL--ELIESDTFYNLKELNTITLSYN----LLKSIKTTSFKNLNNMLNIVLS 371
           +E+ L N  +              +LN + L           +          +  + ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM-NLNLSNNYITNLY 430
                          P L  LDL DN        + +    K   +  L L N  +    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 431 ENDKK--QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLD 488
                   A + ++ LDLS+N +++        +   L  L L F  +K +         
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---- 273

Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
                                    L ++DLS+N +            ++  L++  N  
Sbjct: 274 -----------------------AKLSVLDLSYNRLD--RNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 48/269 (17%), Positives = 92/269 (34%), Gaps = 19/269 (7%)

Query: 170 KKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYN---LQELSLSFNKLQI 226
           + +   +  Q +D  K LS L+ L +R  +I          +     LQEL+L   ++  
Sbjct: 51  RVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109

Query: 227 IELNSNVFDVFEKLQLLEIS-FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSL 285
                 +      L +L +   S    + +   +       L+ L++   +  N     +
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169

Query: 286 YNLTSLNYINLEYNKISKIHN--NLFHFNIHKRLKEIRLSNNYLELIE---SDTFYNLKE 340
               +L+ ++L  N         +         L+ + L N  +E      S       +
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229

Query: 341 LNTITLSYNLLKSI-KTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
           L  + LS+N L+      S    + + ++ LSF  +K +          L  LDL  N  
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYN-- 284

Query: 400 KDFNLNVFSNITSKQTPMNLNLSNNYITN 428
               L+   +        NL+L  N   +
Sbjct: 285 ---RLDRNPSPDELPQVGNLSLKGNPFLD 310

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 70.2 bits (171), Expect = 4e-13
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 306 NNLFHFNIHKRLKEIRLS-NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN 364
           ++L H    + L E+ +    +L+ +E      L EL  +T+  + L+ +   +F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
           +  + LSFN ++ +       L  L +L L  N L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 69.0 bits (168), Expect = 8e-13
 Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 443 SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN-EIKHLDATAFGNLDVLELLSLEHNNIA 501
            L  + +   +   +     A++L +LY++    ++HL+      L  L  L++  + + 
Sbjct: 12  GLRCTRDGALDSLHHL--PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR 549
            V    F   P L  ++LSFN +  L+ +       L+ L +S N L 
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.5 bits (164), Expect = 2e-12
 Identities = 17/96 (17%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 333 DTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVK 391
                 + L  + +     L+ ++    + L  + N+ +  + ++++ P+AF   P L +
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
           L+L  N L+  +      ++ +     L LS N + 
Sbjct: 85  LNLSFNALESLSWKTVQGLSLQ----ELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.9 bits (160), Expect = 8e-12
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 482 TAFGNLDVLELLSLEHNN-IAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRI 540
                 + L  L +E+   +  +  R   G+  L+ + +  + +  +  + F+F+ +L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 541 LNISHNRLRSLPRDVFSNTIIEKLDISYN 569
           LN+S N L SL         +++L +S N
Sbjct: 85  LNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.1 bits (137), Expect = 6e-09
 Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 31/120 (25%)

Query: 208 FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL 267
                NL EL +   +  +  L                                + L  L
Sbjct: 27  LPGAENLTELYIENQQ-HLQHLELRDL---------------------------RGLGEL 58

Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
             L +  + ++ +   + +    L+ +NL +N +  +            L+E+ LS N L
Sbjct: 59  RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ---GLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 31/121 (25%)

Query: 357 TSFKNLNNMLNIVLSFNQ-IKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQT 415
                  N+  + +   Q ++++       L  L  L +  + L+    + F        
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR--- 81

Query: 416 PMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNE 475
                                    +  L+LS N ++ +    +Q    SL++L L  N 
Sbjct: 82  -------------------------LSRLNLSFNALESLSWKTVQGL--SLQELVLSGNP 114

Query: 476 I 476
           +
Sbjct: 115 L 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 31/112 (27%)

Query: 138 LSNLETLLLR-CNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
             NL  L +     +  L     R L                           L  L + 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGL-------------------------GELRNLTIV 64

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS 248
            + +  +  + F     L  L+LSFN L+ +          + L L E+  S
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW-----KTVQGLSLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 9/85 (10%)

Query: 44  SKLRELEITG-KDLKFIDPSAFDNIDACYDL-TLKITNTQIEELPSGLFDKIENIEQMTL 101
             L EL I   + L+ ++      +     L  L I  + +  +    F     +    L
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGE---LRNLTIVKSGLRFVAPDAFHFTPRLS--RL 85

Query: 102 DLSHNKLSVLNMATLYSNVTKLQHL 126
           +LS N L  L+  T+      LQ L
Sbjct: 86  NLSFNALESLSWKTVQG--LSLQEL 108

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.9 bits (173), Expect = 4e-13
 Identities = 48/328 (14%), Positives = 114/328 (34%), Gaps = 22/328 (6%)

Query: 104 SHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQ 163
            H+ L  ++++   + ++       T+      LL  ++   L     T    N   H+ 
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300

Query: 164 KSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK 223
              + A   N+             S+ +   +      +           L    LS  K
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360

Query: 224 LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
             +++   +  +  ++LQ LE        N++    +   +  L+ L  +   ++     
Sbjct: 361 STVLQ---SELESCKELQELEPE------NKWCLLTIILLMRALDPLLYEKETLQYFST- 410

Query: 284 SLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES-DTFYNLKELN 342
            L  +  +    L+  +   +  N      +  ++ + L++  L ++   +    +  L+
Sbjct: 411 -LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLD 469

Query: 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402
              LS+N L+++   +   L  +  +  S N ++ +      NLP L +L L +N+L+  
Sbjct: 470 ---LSHNRLRAL-PPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQS 523

Query: 403 -NLNVFSNITSKQTPMNLNLSNNYITNL 429
             +    +         LNL  N +   
Sbjct: 524 AAIQPLVSCPRLVL---LNLQGNSLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.7 bits (162), Expect = 9e-12
 Identities = 50/332 (15%), Positives = 103/332 (31%), Gaps = 22/332 (6%)

Query: 206 NLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265
                   L  + +S  +  +    S    V  ++  L +       +        +N  
Sbjct: 237 GRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296

Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
           +  WL        N        L    +  +     S+    L         ++      
Sbjct: 297 SHVWLCDLPAASLN------DQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350

Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVN 385
                 S        L +   S   L+ ++  +   L  ++ ++ + + + Y        
Sbjct: 351 LFRCELS--VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQY 407

Query: 386 LPNLVKLD-----LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIY 440
              L  +D       D+    F L              L+L++  +T L   ++      
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL--- 464

Query: 441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI 500
           +  LDLS+NR++ +P          L  L    N ++++D     NL  L+ L L +N +
Sbjct: 465 VTHLDLSHNRLRALPPAL--AALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL 520

Query: 501 AVV-VKRTFIGMPNLQIIDLSFNEISMLTGEQ 531
                 +  +  P L +++L  N +    G Q
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 36/326 (11%), Positives = 98/326 (30%), Gaps = 17/326 (5%)

Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
           + L  +                 L++  +    + +     L  ++   L     +    
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293

Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
           N         L    L++   +      +          L  +  +            + 
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC-WCRDSATDEQLF 352

Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
              LS  +   +  +   +   L +L+ ++       + +   +             + +
Sbjct: 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411

Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGN 486
             + +  +      ++S  L  N + ++    +       R L+L   ++  L       
Sbjct: 412 KAV-DPMRAAYLDDLRSKFLLENSVLKMEYADV-------RVLHLAHKDLTVLCH--LEQ 461

Query: 487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN 546
           L ++  L L HN +  +       +  L+++  S N +  + G       +L+ L + +N
Sbjct: 462 LLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN 518

Query: 547 RLRSLP--RDVFSNTIIEKLDISYNQ 570
           RL+     + + S   +  L++  N 
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNS 544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 7e-08
 Identities = 43/253 (16%), Positives = 80/253 (31%), Gaps = 23/253 (9%)

Query: 61  PSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMT----LDLSHNKLSVLNMATL 116
                        T   +  +   L         +          +LS  K +VL   + 
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ--SE 367

Query: 117 YSNVTKLQHL---GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNN 173
             +  +LQ L       L     L+  L+ LL     +   +  L               
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRAAYLDDLR 426

Query: 174 NNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV 233
           +    + S  +   +++  L L    +T L       L  +  L LS N+L+ +      
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA--- 481

Query: 234 FDVFEKLQLLEISF-SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY-SLYNLTSL 291
                 L++L+ S  +L N +         NL  L+ L + NN ++       L +   L
Sbjct: 482 LAALRCLEVLQASDNALENVDGVA------NLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 292 NYINLEYNKISKI 304
             +NL+ N + + 
Sbjct: 536 VLLNLQGNSLCQE 548

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 9/162 (5%)

Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
            LN+++ +  +N++IK+++      L ++ Y+ L  NK+      +        L  + L
Sbjct: 39  ELNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLHD----ISALKELTNLTYLIL 92

Query: 323 SNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNA 382
           + N L+ + +  F  L  L  + L  N L+S+    F  L N+  + L+ NQ++ +    
Sbjct: 93  TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152

Query: 383 FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
           F  L NL +LDL  N+L+     VF  +T  +    L L  N
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD---LRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 7/161 (4%)

Query: 264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS 323
           L  + +LA+  N + +I       LT+L Y+ L  N++  + N +F       LKE+ L 
Sbjct: 62  LPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQLQSLPNGVFDK--LTNLKELVLV 117

Query: 324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
            N L+ +    F  L  L  + L++N L+S+    F  L N+  + LS+NQ++ +    F
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177

Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
             L  L  L L  N+LK     VF  +TS Q    + L +N
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY---IWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 18/184 (9%)

Query: 391 KLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNR 450
           K +L+   + D      + + S      +  +N+ I ++           ++ L L  N+
Sbjct: 23  KANLKKKSVTD--AVTQNELNSIDQ---IIANNSDIKSVQGIQY---LPNVRYLALGGNK 74

Query: 451 IQEVPVNFLQTFADSL---RKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRT 507
           + ++           L     L L  N+++ L    F  L  L+ L L  N +  +    
Sbjct: 75  LHDISA-----L-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128

Query: 508 FIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TIIEKLDI 566
           F  + NL  ++L+ N++  L    F     L  L++S+N+L+SLP  VF   T ++ L +
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188

Query: 567 SYNQ 570
             NQ
Sbjct: 189 YQNQ 192

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 11/188 (5%)

Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
           L++++ ++   + I  + G   ++L N++ L+L  NKL  I            L  L ++
Sbjct: 40  LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS----ALKELTNLTYLILT 93

Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN 306
            +   S   P  + +K L  L+ L +  N ++++ +     LT+L Y+NL +N++  +  
Sbjct: 94  GNQLQS--LPNGVFDK-LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150

Query: 307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML 366
            +F    +  L E+ LS N L+ +    F  L +L  + L  N LKS+    F  L ++ 
Sbjct: 151 GVFDKLTN--LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208

Query: 367 NIVLSFNQ 374
            I L  N 
Sbjct: 209 YIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 35/216 (16%)

Query: 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402
              L    +      +   LN++  I+ + + IK +       LPN+  L L  NKL   
Sbjct: 23  KANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-- 76

Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
           +++    +T+                               L L+ N++Q +P       
Sbjct: 77  DISALKELTNLTY----------------------------LILTGNQLQSLPNGVFDKL 108

Query: 463 ADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
             +L++L L  N+++ L    F  L  L  L+L HN +  + K  F  + NL  +DLS+N
Sbjct: 109 T-NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167

Query: 523 EISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
           ++  L    F    +L+ L +  N+L+S+P  VF  
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 53/238 (22%), Positives = 85/238 (35%), Gaps = 57/238 (23%)

Query: 74  TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVL-------NMATLYSNVTKLQHL 126
              +    + +  +      E      +  +++ +  +       N+  L     KL  +
Sbjct: 23  KANLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI 78

Query: 127 GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ-----VS 181
                      L+NL  L+L  N++  L   +F  L       +     N+ Q     V 
Sbjct: 79  SAL---KE---LTNLTYLILTGNQLQSLPNGVFDKLTNL---KELVLVENQLQSLPDGVF 129

Query: 182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
           D+   L+NL  L L  N++  L   +F  L NL EL LS+N+LQ   L   VFD      
Sbjct: 130 DK---LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--SLPEGVFD------ 178

Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
                                 L  L+ L +  N +K++ +     LTSL YI L  N
Sbjct: 179 ---------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 6/136 (4%)

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
           T+   + L  N+I+K+   +F       LKE+ L +N L  +    F +L +L  + L  
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDS--LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
           N L  + +  F  L ++  + +  N++  + P     L +L  L L  N+LK      F 
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 409 NITSKQTPMNLNLSNN 424
            ++S        L  N
Sbjct: 157 RLSSLTH---AYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
            ++D  + R   VP           + LYL  N+I  L+   F +L  L+ L L  N + 
Sbjct: 22  TTVDCRSKRHASVPAGIPTN----AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG 77

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTII 561
            +    F  +  L ++DL  N++++L    F     L+ L +  N+L  LPR +   T +
Sbjct: 78  ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHL 137

Query: 562 EKLDISYNQDKIRP 575
             L +  NQ K  P
Sbjct: 138 THLALDQNQLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 10/134 (7%)

Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
            + L  NQI  + P  F +L NL +L L  N+L    + VF ++T       L+L  N +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV---LDLGTNQL 100

Query: 427 TNLYEN--DKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAF 484
           T L     D+    +++K L +  N++ E+P    +     L  L LD N++K +   AF
Sbjct: 101 TVLPSAVFDR---LVHLKELFMCCNKLTELPRGIERL--THLTHLALDQNQLKSIPHGAF 155

Query: 485 GNLDVLELLSLEHN 498
             L  L    L  N
Sbjct: 156 DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 22/89 (24%), Positives = 39/89 (43%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
            I    + + L +N +  +E   F +L  L  + L  N L ++    F +L  +  + L 
Sbjct: 37  GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLK 400
            NQ+  +    F  L +L +L +  NKL 
Sbjct: 97  TNQLTVLPSAVFDRLVHLKELFMCCNKLT 125

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 41/166 (24%)

Query: 139 SNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ-----VSDREKLLSNLETL 193
           +N + L L  N+IT L   +F  L       +    +N+       V D    L+ L  L
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINL---KELYLGSNQLGALPVGVFDS---LTQLTVL 93

Query: 194 LLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSN 253
            L  N++T L   +F  L +L+EL +  NKL  +       +                  
Sbjct: 94  DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP---RGIE------------------ 132

Query: 254 EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
                     L  L  LA+D N +K+I + +   L+SL +  L  N
Sbjct: 133 ---------RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 42/187 (22%), Positives = 62/187 (33%), Gaps = 56/187 (29%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
           +N + L L  N+IT L   +F  L NL+EL L  N+L    L   VFD            
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG--ALPVGVFD------------ 85

Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
                          +L  L  L +  N +  + +     L  L  + +  NK       
Sbjct: 86  ---------------SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK------- 123

Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
                    L E+                 L  L  + L  N LKSI   +F  L+++ +
Sbjct: 124 ---------LTEL-----------PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

Query: 368 IVLSFNQ 374
             L  N 
Sbjct: 164 AYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P   + L L +N+I ++      +   +L++LYL  N++  L    F +L  L +L L  
Sbjct: 39  PTNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
           N + V+    F  + +L+ + +  N+++ L          L  L +  N+L+S+P   F 
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 558 N 558
            
Sbjct: 157 R 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 46/159 (28%)

Query: 3   LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQ----GIFNSKLRELEITGKDLKF 58
           L L  N+++ L    ++ ++  L+ L    L  +QL     G+F+  L +L         
Sbjct: 45  LYLHDNQITKLE-PGVFDSLINLKELY---LGSNQLGALPVGVFD-SLTQLT-------- 91

Query: 59  IDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVL------- 111
                           L +   Q+  LPS +FD++ ++++  L +  NKL+ L       
Sbjct: 92  ---------------VLDLGTNQLTVLPSAVFDRLVHLKE--LFMCCNKLTELPRGIERL 134

Query: 112 -NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCN 149
            ++  L  +  +L+ +      DR   LS+L    L  N
Sbjct: 135 THLTHLALDQNQLKSIPHGAF-DR---LSSLTHAYLFGN 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 16/173 (9%)

Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLK 318
           I    +N+L ++ + N N+ ++    +    ++  + +     +  +      +    L+
Sbjct: 38  ITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP----ISGLSNLE 91

Query: 319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN-QIKY 377
            +R+    +   +      L  L  + +S++       T    L  + +I LS+N  I  
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYITNL 429
           I P     LP L  L++Q + + D+  +  F  +        L   +  I   
Sbjct: 152 IMPLK--TLPELKSLNIQFDGVHDYRGIEDFPKLNQ------LYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 26/192 (13%), Positives = 63/192 (32%), Gaps = 20/192 (10%)

Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
                     +  ++  NI   +   + SL YI L    ++ +            +K++ 
Sbjct: 20  STFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDLTG----IEYAHNIKDLT 72

Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN 381
           ++N +           L  L  + +    + S K  +   L ++  + +S +        
Sbjct: 73  INNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL--YENDKKQAPI 439
               LP +  +DL  N     ++     +   ++   LN+  + + +    E+  K    
Sbjct: 131 KINTLPKVNSIDLSYNG-AITDIMPLKTLPELKS---LNIQFDGVHDYRGIEDFPK---- 182

Query: 440 YIKSLDLSNNRI 451
            +  L   +  I
Sbjct: 183 -LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 31/194 (15%), Positives = 61/194 (31%), Gaps = 19/194 (9%)

Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMN 418
                 LN +L  +    I       + +L  + L +  + D   +    NI        
Sbjct: 20  STFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDLTGIEYAHNIKD------ 70

Query: 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478
           L ++N + TN            ++ L +    +    +  L     SL  L +  +    
Sbjct: 71  LTINNIHATNYNPISGLSN---LERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDD 126

Query: 479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTG-EQFYFSFK 537
              T    L  +  + L +N     +      +P L+ +++ F+ +    G E F    K
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFP---K 182

Query: 538 LRILNISHNRLRSL 551
           L  L      +   
Sbjct: 183 LNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 16/187 (8%)

Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
            K             + T   +  L  ITL+   +  +  T  +  +N+ ++ ++     
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT 79

Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQ 436
              P     L NL +L +    +    +   S +TS      L++S++   +        
Sbjct: 80  NYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL---LDISHSAHDDSILTKINT 134

Query: 437 APIYIKSLDLS-NNRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLS 494
            P  + S+DLS N  I ++ P+  L      L+ L + F+ +   D     +   L  L 
Sbjct: 135 LP-KVNSIDLSYNGAITDIMPLKTLP----ELKSLNIQFDGVH--DYRGIEDFPKLNQLY 187

Query: 495 LEHNNIA 501
                I 
Sbjct: 188 AFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 30/190 (15%), Positives = 69/190 (36%), Gaps = 18/190 (9%)

Query: 167 VKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQI 226
                   ++   +++ +  +++L  + L    +TDL G    + +N+++L+++      
Sbjct: 25  YLNGLLGQSSTANITEAQ--MNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN 80

Query: 227 IELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
               S        L+ L I      S++ P       L +L  L + ++   +     + 
Sbjct: 81  YNPISG----LSNLERLRIMGKDVTSDKIPN---LSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 287 NLTSLNYINLEYN-KISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT 345
            L  +N I+L YN  I+ I            LK + +  + +         +  +LN + 
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP----LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLY 187

Query: 346 LSYNLLKSIK 355
                +   K
Sbjct: 188 AFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 15/168 (8%)

Query: 138 LSNLETLLLRCNKITDLNG-NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
           +++L  + L    +TDL G     +++   +      NN      +    LSNLE L + 
Sbjct: 43  MNSLTYITLANINVTDLTGIEYAHNIKDLTI------NNIHATNYNPISGLSNLERLRIM 96

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
              +T         L +L  L +S +      L     +   K+  +++S++   ++  P
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK--INTLPKVNSIDLSYNGAITDIMP 154

Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKI 304
                K L  L+ L +  + + + R   + +   LN +      I   
Sbjct: 155 ----LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 25/214 (11%), Positives = 69/214 (32%), Gaps = 38/214 (17%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
           S  +  L      +         + +L  ++L+   +  +                 I  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT---------------GIE- 63

Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN 307
                            + ++ L ++N +  N     +  L++L  + +    ++   + 
Sbjct: 64  ---------------YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTS--DK 104

Query: 308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
           + + +    L  + +S++  +         L ++N+I LSYN   +      K L  + +
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKS 163

Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKD 401
           + + F+ +         + P L +L      +  
Sbjct: 164 LNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 15/146 (10%)

Query: 92  KIENIEQMT----LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLS---NLETL 144
            +  IE       L +++   +  N  +  SN+ +L+ +G  +  D+   LS   +L  L
Sbjct: 58  DLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 145 LLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKL--LSNLETLLLRCNKITD 202
            +  +   D        L K        N      ++D   L  L  L++L ++ + + D
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG----AITDIMPLKTLPELKSLNIQFDGVHD 173

Query: 203 LNGNLFRHLYNLQELSLSFNKLQIIE 228
             G        L +L      +   +
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTIGGKK 197

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 1/109 (0%)

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
                + L  N++ +I ++   F     L ++ L  N L  IE + F     +  + L  
Sbjct: 29  LHTTELLLNDNELGRISSDGL-FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
           N +K I    F  L+ +  + L  NQI  + P +F +L +L  L+L  N
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 318 KEIRLSNNYLELIESD-TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK 376
            E+ L++N L  I SD  F  L  L  + L  N L  I+  +F+  +++  + L  N+IK
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
            I    F+ L  L  L+L DN++       F ++ S  +   LNL++N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS---LNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 191 ETLLLRCNKITDLNGN-LFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSL 249
             LLL  N++  ++ + LF  L +L +L L  N+L  IE   N F+    +Q L++    
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQELQL---- 85

Query: 250 FNSNEF---PYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
              N+       +    L+ L+ L + +N I  +   S  +L SL  +NL  N
Sbjct: 86  -GENKIKEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATA-FGNLDVLELLSLEHNNI 500
            ++D +   ++E+P +          +L L+ NE+  + +   FG L  L  L L+ N +
Sbjct: 11  TTVDCTGRGLKEIPRDIPLH----TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
             +    F G  ++Q + L  N+I  ++ + F    +L+ LN+  N++  +    F +
Sbjct: 67  TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 23/88 (26%), Positives = 44/88 (50%)

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P++   L L++N +  +  + L      L KL L  N++  ++  AF     ++ L L  
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
           N I  +  + F+G+  L+ ++L  N+IS
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 30/135 (22%)

Query: 215 QELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDN 274
            EL L+ N+L  I  +  +F                             L  L  L +  
Sbjct: 32  TELLLNDNELGRISSDG-LFG---------------------------RLPHLVKLELKR 63

Query: 275 NNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDT 334
           N +  I   +    + +  + L  NKI +I N +F   +H+ LK + L +N +  +   +
Sbjct: 64  NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL-GLHQ-LKTLNLYDNQISCVMPGS 121

Query: 335 FYNLKELNTITLSYN 349
           F +L  L ++ L+ N
Sbjct: 122 FEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF--ADSLRKLYLDFNE 475
            L L++N +  +  +       ++  L+L  N++  +  N    F  A  +++L L  N+
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN---AFEGASHIQELQLGENK 89

Query: 476 IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
           IK +    F  L  L+ L+L  N I+ V+  +F  + +L  ++L+ N
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 28/125 (22%)

Query: 3   LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFNSKLRELEITGKDLKFIDPS 62
           L L+ N+L  ++   L+  +  L  L    LK +QL GI                  +P+
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLE---LKRNQLTGI------------------EPN 72

Query: 63  AFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKL-SVLNMATLYSNVT 121
           AF+      +L L     +I+E+ + +F  +  ++  TL+L  N++  V+  +  + ++ 
Sbjct: 73  AFEGASHIQELQL--GENKIKEISNKMFLGLHQLK--TLNLYDNQISCVMPGS--FEHLN 126

Query: 122 KLQHL 126
            L  L
Sbjct: 127 SLTSL 131

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
               Y++LE N +  + N +F       L ++ L  N L+ + +  F  L  L  + LS 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDE--LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFS 408
           N L+S+    F  L  +  + L+ NQ++ +    F  L  L  L L  N+LK     VF 
Sbjct: 86  NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145

Query: 409 NITSKQTPMNLNLSNN 424
            +TS Q    + L +N
Sbjct: 146 RLTSLQY---IWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
            I  +   + L  N L+ + +  F  L  L  + L  N L+S+    F  L ++  + LS
Sbjct: 25  GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
            NQ++ +    F  L  L +L L  N+L+     VF  +T  +    L L  N
Sbjct: 85  TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD---LRLYQN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
            +++  +     VP             L L+ N +K L    F  L  L  L L  N + 
Sbjct: 10  TTVECYSQGRTSVPTGI----PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ 65

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN-TI 560
            +    F  + +L  ++LS N++  L    F    +L+ L ++ N+L+SLP  VF   T 
Sbjct: 66  SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125

Query: 561 IEKLDISYNQDKIRP 575
           ++ L +  NQ K  P
Sbjct: 126 LKDLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 41/163 (25%), Positives = 62/163 (38%), Gaps = 40/163 (24%)

Query: 142 ETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ-----VSDREKLLSNLETLLLR 196
             L L  N +  L   +F  L       +     N+ Q     V ++   L++L  L L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSL---TQLYLGGNKLQSLPNGVFNK---LTSLTYLNLS 84

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
            N++  L   +F  L  L+EL+L+ N+LQ   L   VFD                     
Sbjct: 85  TNQLQSLPNGVFDKLTQLKELALNTNQLQ--SLPDGVFD--------------------- 121

Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
                  L  L+ L +  N +K++ +     LTSL YI L  N
Sbjct: 122 ------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 55/184 (29%)

Query: 191 ETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLF 250
             L L  N +  L   +F  L +L +L L  NKLQ +   + VF+               
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP--NGVFN--------------- 73

Query: 251 NSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH 310
                        L +L +L +  N ++++ N     LT L  + L  N++  + + +F 
Sbjct: 74  ------------KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD 121

Query: 311 FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVL 370
                                      L +L  + L  N LKS+    F  L ++  I L
Sbjct: 122 --------------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155

Query: 371 SFNQ 374
             N 
Sbjct: 156 HDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 1/121 (0%)

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P     LDL  N ++ +P         SL +LYL  N+++ L    F  L  L  L+L  
Sbjct: 27  PAQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS 557
           N +  +    F  +  L+ + L+ N++  L    F    +L+ L +  N+L+S+P  VF 
Sbjct: 86  NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145

Query: 558 N 558
            
Sbjct: 146 R 146

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 37/160 (23%)

Query: 367 NIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI 426
            + L  N +K +    F  L +L +L L  NKL+     VF+ +TS              
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY----------- 80

Query: 427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVN-FLQTFADSLRK---LYLDFNEIKHLDAT 482
                            L+LS N++Q +P   F     D L +   L L+ N+++ L   
Sbjct: 81  -----------------LNLSTNQLQSLPNGVF-----DKLTQLKELALNTNQLQSLPDG 118

Query: 483 AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
            F  L  L+ L L  N +  V    F  + +LQ I L  N
Sbjct: 119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 48/167 (28%)

Query: 75  LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDR 134
           L +    ++ LP+G+FD++ ++    L L  NKL      +L + V            ++
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLT--QLYLGGNKL-----QSLPNGVF-----------NK 74

Query: 135 EKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLL 194
              L++L  L L  N++  L                       + V D+   L+ L+ L 
Sbjct: 75  ---LTSLTYLNLSTNQLQSL----------------------PNGVFDK---LTQLKELA 106

Query: 195 LRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
           L  N++  L   +F  L  L++L L  N+L+ +     VFD    LQ
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQ 151

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 4e-11
 Identities = 70/460 (15%), Positives = 146/460 (31%), Gaps = 134/460 (29%)

Query: 67  IDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHL 126
           +D C    ++       ++   +F        + L   ++  +VL M         LQ L
Sbjct: 168 LDVCLSYKVQ------CKMDFKIF-------WLNLKNCNSPETVLEM---------LQKL 205

Query: 127 GTTILKDREKLLSNLETLLLRCNKITDLNGNLFRH--LQKS--IVKAKKNNNNNEDQVSD 182
              I  +      +   + LR + I      L +    +    ++            V +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL----------LNVQN 255

Query: 183 REKLLSNLETLLLRC--------NKITD-LNGNLFRHLYNLQELSLSFNKLQIIELNSNV 233
            +          L C         ++TD L+     H+  L   S++    ++  L    
Sbjct: 256 AK----AWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKY 310

Query: 234 FDV-FEKL--QLLEIS---FSLFNSNEFPYYILNKNLNTLE-WLAMDNNNIKNIRNYSLY 286
            D   + L  ++L  +    S+   +      +   L T + W  ++ + +  I   SL 
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAES------IRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITL 346
            L    Y  + ++++S     +F  + H  +  I LS  + ++I+SD    + +L     
Sbjct: 365 VLEPAEYRKM-FDRLS-----VFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKL----H 412

Query: 347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ-DNKLKDFNLN 405
            Y+L++       K                 I               +  + K+K     
Sbjct: 413 KYSLVE-------KQPKEST---------ISIP-------------SIYLELKVK----- 438

Query: 406 VFSNITSKQTPMNLNLSNNY-ITNLYENDKKQAPI---YIKSL---DLSNNRIQEVPVNF 458
                   +  ++ ++ ++Y I   +++D    P    Y  S     L N    E     
Sbjct: 439 -----LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER---- 489

Query: 459 LQTFADSLRKLYLDF----NEIKHLDATAFGNLDVLELLS 494
                   R ++LDF     +I+H       +  +L  L 
Sbjct: 490 ----MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 80/511 (15%), Positives = 168/511 (32%), Gaps = 126/511 (24%)

Query: 176 NEDQVSDREKLLSNLETLL--LRCNKITDLNGNLF-----RHLYNL-QELSLSFNKLQII 227
            E Q   ++ L    +  +    C  + D+  ++       H+      +S +      +
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 228 EL-NSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
                 +   F + ++L I++  F  +         ++ T  ++   +    + + ++ Y
Sbjct: 72  LSKQEEMVQKFVE-EVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRL---------K-----EIRLSNNYLELIES 332
           N++ L           K+   L      K +         K     ++ LS      ++ 
Sbjct: 130 NVSRLQ-------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 333 DTFY-NLKELNT----ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY---------I 378
             F+ NLK  N+    + +   LL  I        ++  NI L  + I+           
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 379 YPNAFVNLPNLVKLDLQDNK-LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA 437
           Y N       LV L++Q+ K    FNL+    +T++   +   LS    T++  +     
Sbjct: 243 YENCL-----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 438 PIYIKSLDLS----NNRIQEVPVNFLQT-------FADSLRKLYLDFNEIKHLDATAFGN 486
               +   L     + R Q++P   L T        A+S+R     ++  KH++      
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 487 -----LDVLELLSLEHN--NIAVVVKRTFIGMPNLQII--DLSFNEISMLTGE------- 530
                L+VLE          ++V      I    L +I  D+  +++ ++  +       
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 531 ------------QFYFSFKLRILNIS--HNRL---RSLPRDVFSNTII------------ 561
                         Y   K+++ N    H  +    ++P+   S+ +I            
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 562 ----------EK--------LDISYNQDKIR 574
                     E+        LD  + + KIR
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-05
 Identities = 44/275 (16%), Positives = 80/275 (29%), Gaps = 66/275 (24%)

Query: 340 ELNTITLSY------NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIY--PNAFVNLPNLVK 391
           E       Y           +     K++ +M   +LS  +I +I    +A      L  
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 392 --LDLQDNKLKDF-----NLN---VFSNIT--SKQTPMNLNLSNNYITNLYENDKKQAPI 439
             L  Q+  ++ F      +N   + S I    +Q  M   +       LY ND     +
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-ND---NQV 125

Query: 440 YIKSLDLSNNRIQEVPVNFLQTFADSLRK-----LY---------------LDFNEIKHL 479
           + K    + +R+Q  P   L+     LR      +                L +     +
Sbjct: 126 FAK---YNVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 480 DATAF----GNLDVLELLSLEHNNIAVVVKRTFIGMPN-LQIIDLSFNEISMLTGEQFYF 534
           D   F     N +  E +      +   +   +    +    I L  + I          
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-------- 232

Query: 535 SFKLRILNISHNRLRSLP--RDVFSNTIIEKLDIS 567
             +LR L  S      L    +V +       ++S
Sbjct: 233 --ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
             +  + L+ N+ + +   L ++   K L  I LSNN +  + + +F N+ +L T+ LSY
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNY---KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
           N L+ I   +F  L ++  + L  N I  +   AF +L  L  L +  N
Sbjct: 88  NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
            I + + E+ L  N   L+      N K L  I LS N + ++   SF N+  +L ++LS
Sbjct: 28  GIPRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
           +N+++ I P  F  L +L  L L  N +       F+++++      L +  N
Sbjct: 87  YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH---LAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 29/127 (22%)

Query: 173 NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSN 232
           + N    V        +L  + L  N+I+ L+   F ++  L  L LS+N+L+   +   
Sbjct: 39  DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR--CIPPR 96

Query: 233 VFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLN 292
            FD                            L +L  L++  N+I  +   +  +L++L+
Sbjct: 97  TFD---------------------------GLKSLRLLSLHGNDISVVPEGAFNDLSALS 129

Query: 293 YINLEYN 299
           ++ +  N
Sbjct: 130 HLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
           N   L  + + NN I  + N S  N+T L  + L YN++  I    F   +   L+ + L
Sbjct: 52  NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD-GLKS-LRLLSL 109

Query: 323 SNNYLELIESDTFYNLKELNTITLSYN 349
             N + ++    F +L  L+ + +  N
Sbjct: 110 HGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
           P  +  L L  N+   VP          L  + L  N I  L   +F N+  L  L L +
Sbjct: 30  PRDVTELYLDGNQFTLVPKELSNY--KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISML 527
           N +  +  RTF G+ +L+++ L  N+IS++
Sbjct: 88  NRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD--SLRKLYLDFNE 475
            L L  N  T + +        ++  +DLSNNRI  +      +F++   L  L L +N 
Sbjct: 35  ELYLDGNQFTLVPKELSNYK--HLTLIDLSNNRISTLSNQ---SFSNMTQLLTLILSYNR 89

Query: 476 IKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
           ++ +    F  L  L LLSL  N+I+VV +  F  +  L  + +  N
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.6 bits (153), Expect = 7e-11
 Identities = 47/264 (17%), Positives = 98/264 (37%), Gaps = 42/264 (15%)

Query: 284 SLYNLTSLNYINLEYNKIS---KIHNNLFHFNIHKRLKEIRLSN-NYLELIESDTFYNLK 339
           +      +N ++L    +     I ++L +      L  + +   N L          L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANL---PYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
           +L+ + +++  +          +  ++ +  S+N +    P +  +LPNLV +    N++
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 400 KDFNLNVFSNITSKQTPMNLNLSNNYIT----------NLYENDKKQAPIYIKSLDLSNN 449
                + + + +   T  ++ +S N +T          NL              +DLS N
Sbjct: 162 SGAIPDSYGSFSKLFT--SMTISRNRLTGKIPPTFANLNL------------AFVDLSRN 207

Query: 450 RIQ-EVPVNFLQTFADSLRKLYLDFNEIKHLDAT--AFGNLDVLELLSLEHNNIAVVVKR 506
            ++ +  V F      + +K++L  N    L       G    L  L L +N I   + +
Sbjct: 208 MLEGDASVLFGS--DKNTQKIHLAKN---SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 507 TFIGMPNLQIIDLSFNEISMLTGE 530
               +  L  +++SFN    L GE
Sbjct: 263 GLTQLKFLHSLNVSFN---NLCGE 283

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 56/261 (21%), Positives = 94/261 (36%), Gaps = 30/261 (11%)

Query: 206 NLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265
           +     Y +  L LS   L       +       L  L I          P  I    L 
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLT 101

Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKEIRLSN 324
            L +L + + N+       L  + +L  ++  YN +S  +  ++        L  I    
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL---PNLVGITFDG 158

Query: 325 NYLELIESDTFYNLKELNT-ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
           N +     D++ +  +L T +T+S N L      +F NL N+  + LS N ++      F
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT--------NLYENDKK 435
            +  N  K+ L  N L  F+L       +      L+L NN I          L      
Sbjct: 218 GSDKNTQKIHLAKNSL-AFDLGKVGLSKNLNG---LDLRNNRIYGTLPQGLTQL------ 267

Query: 436 QAPIYIKSLDLSNNRIQ-EVP 455
               ++ SL++S N +  E+P
Sbjct: 268 ---KFLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 45/220 (20%), Positives = 74/220 (33%), Gaps = 46/220 (20%)

Query: 187 LSNLETLLLRCNKITDLNGNL---FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLL 243
           L+ L  L +    ++   G +      +  L  L  S+N L                   
Sbjct: 100 LTQLHYLYITHTNVS---GAIPDFLSQIKTLVTLDFSYNALS-----------------G 139

Query: 244 EISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK-NIRNYSLYNLTSL-NYINLEYNKI 301
            +  S+             +L  L  +  D N I   I + S  + + L   + +  N++
Sbjct: 140 TLPPSIS------------SLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRL 186

Query: 302 S-KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLK-SIKTTSF 359
           + KI     + N    L  + LS N LE   S  F + K    I L+ N L   +     
Sbjct: 187 TGKIPPTFANLN----LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--GKV 240

Query: 360 KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
               N+  + L  N+I    P     L  L  L++  N L
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 30/207 (14%), Positives = 70/207 (33%), Gaps = 29/207 (14%)

Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN---------YITN 428
           +  +       +  LDL    L      + S++ +      L +             I  
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNL-PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 429 LYENDKKQAPIYIKSLDLSNNRIQ-EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL 487
           L           +  L +++  +   +P     +   +L  L   +N +      +  +L
Sbjct: 100 L---------TQLHYLYITHTNVSGAIPDFL--SQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 488 DVLELLSLEHNNIAVVVKRTFIGMPNL-QIIDLSFNEISMLTGE--QFYFSFKLRILNIS 544
             L  ++ + N I+  +  ++     L   + +S N    LTG+    + +  L  +++S
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN---RLTGKIPPTFANLNLAFVDLS 205

Query: 545 HNRLR-SLPRDVFSNTIIEKLDISYNQ 570
            N L         S+   +K+ ++ N 
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNS 232

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 76/494 (15%), Positives = 152/494 (30%), Gaps = 128/494 (25%)

Query: 100 TLDLSHNKLSVLNMATLYSNVTKLQHL----------GTTILKDREKLLSNLETLLLRCN 149
           +LD+   +LS    A L   + + Q +              +    ++   L  L LR N
Sbjct: 7   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66

Query: 150 KITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN----G 205
           ++ D+           +++  +  +               ++ L L+   +T        
Sbjct: 67  ELGDVGV-------HCVLQGLQTPS-------------CKIQKLSLQNCCLTGAGCGVLS 106

Query: 206 NLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN 265
           +  R L  LQEL LS N L     ++ +  + E L                         
Sbjct: 107 STLRTLPTLQELHLSDNLLG----DAGLQLLCEGLL--------------------DPQC 142

Query: 266 TLEWLAMDNNNI-----KNIRNYSLYNLTSLNYINLEYNKIS-----KIHNNLFHFNIHK 315
            LE L ++  ++     + + +  L        + +  N I+      +   L       
Sbjct: 143 RLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC-- 199

Query: 316 RLKEIRLSNNYL---------ELIESDTFYNLKELNTITLSYNLL-----KSIKTTSFKN 361
           +L+ ++L +  +          ++ S    +L+EL    L  N L       +       
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKA--SLRELA---LGSNKLGDVGMAELCPGLLHP 254

Query: 362 LNNMLNIVLSFNQI-----KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTP 416
            + +  + +    I       +         +L +L L  N+L D    +      +   
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313

Query: 417 M--NLNLSNNYITN---------LYENDKKQAPIYIKSLDLSNNRIQEVPVNF----LQT 461
              +L + +   T          L +N        +  L +SNNR+++  V      L  
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRF------LLELQISNNRLEDAGVRELCQGLGQ 367

Query: 462 FADSLRKLYLDFNEI-----KHLDATAFGNLDVLELLSLEHNNI-----AVVVKRTFIGM 511
               LR L+L   ++       L A        L  L L +N +       +V+      
Sbjct: 368 PGSVLRVLWLADCDVSDSSCSSL-AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 426

Query: 512 PNLQIIDLSFNEIS 525
             L+ + L     S
Sbjct: 427 CLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 66/433 (15%), Positives = 136/433 (31%), Gaps = 76/433 (17%)

Query: 188 SNLETLLLRCNKITDLN-GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
            ++++L ++C +++D     L   L   Q + L    L                    IS
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD-------------IS 49

Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNI-----KNIRNYSLYNLTSLNYINLEYNKI 301
            +L            +    L  L + +N +       +          +  ++L+   +
Sbjct: 50  SAL------------RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

Query: 302 SKIHNNLF--HFNIHKRLKEIRLSNNYL-----ELIESDTFYNLKELNTITLSYNLLKSI 354
           +     +          L+E+ LS+N L     +L+          L  + L Y  L + 
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157

Query: 355 KTTSF----KNLNNMLNIVLSFNQI-----KYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
                    +   +   + +S N I     + +      +   L  L L+   +   N  
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217

Query: 406 VFSN-ITSKQTPMNLNLSNNYITN-----LYENDKKQAPIYIKSLDLSNNRIQEVPVNFL 459
                + SK +   L L +N + +     L       +   +++L +    I       L
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR-LRTLWIWECGITAKGCGDL 276

Query: 460 -QTFAD--SLRKLYLDFNEI-----KHLDATAFGNLDVLELLSLEHNNI----AVVVKRT 507
            +      SL++L L  NE+     + L  T       LE L ++  +            
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 508 FIGMPNLQIIDLSFNEISMLTGEQF-----YFSFKLRILNISHNRL-----RSLPRDVFS 557
                 L  + +S N +      +           LR+L ++   +      SL   + +
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 558 NTIIEKLDISYNQ 570
           N  + +LD+S N 
Sbjct: 397 NHSLRELDLSNNC 409

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 76/530 (14%), Positives = 169/530 (31%), Gaps = 152/530 (28%)

Query: 2   TLDLSHNKLSVLNMATLYSNVTKLQH--LGTTILKGDQLQGIF-----NSKLRELEITGK 54
           +LD+   +LS    A L   + + Q   L    L   + + I      N  L EL +   
Sbjct: 7   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66

Query: 55  DLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMA 114
           +   +       +       L+  + +I+                 L L +  L+     
Sbjct: 67  E---LGDVGVHCVLQG----LQTPSCKIQ----------------KLSLQNCCLTGAGCG 103

Query: 115 TLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN 174
            L S +  L                 L+ L L  N + D          + + +   +  
Sbjct: 104 VLSSTLRTLP---------------TLQELHLSDNLLGDAGL-------QLLCEGLLDPQ 141

Query: 175 NNEDQVSDREKLLSNLETLLLRCNKITDLN----GNLFRHLYNLQELSLSFNKLQIIELN 230
                          LE L L    ++  +     ++ R   + +EL++S N +      
Sbjct: 142 -------------CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN----E 184

Query: 231 SNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNI-----KNIRNYSL 285
           + V  + +                     L  +   LE L +++  +     +++    +
Sbjct: 185 AGVRVLCQ--------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGI-V 223

Query: 286 YNLTSLNYINLEYNKIS-----KIHNNLFHFNIHKRLKEIRLSNNYL---------ELIE 331
            +  SL  + L  NK+      ++   L H +   RL+ + +    +          ++ 
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPS--SRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 332 SDTFYNLKELNTITLSYNLL-----KSIKTTSFKNLNNMLNIVLSFNQI-----KYIYPN 381
           +    +LKEL+   L+ N L     + +  T  +    + ++ +           +   +
Sbjct: 282 AKE--SLKELS---LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-S 335

Query: 382 AFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM--NLNLSNNYITN---------LY 430
                  L++L + +N+L+D  +        +   +   L L++  +++         L 
Sbjct: 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395

Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVN----FLQTFADSLRKLYLDFNEI 476
            N        ++ LDLSNN + +  +      ++     L +L L     
Sbjct: 396 ANHS------LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 289 TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSY 348
           +S   + LE NK+  + + +F      +L ++ LS N ++ +    F  L +L  + L  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDK--LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85

Query: 349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN 397
           N L+S+    F  L  +  + L  NQ+K +    F  L +L K+ L  N
Sbjct: 86  NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
            I      + L +N L+ +    F  L +L  ++LS N ++S+    F  L  +  + L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
            N+++ +    F  L  L +L L  N+LK     +F  +TS Q    + L  N
Sbjct: 85  ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK---IWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 29/113 (25%)

Query: 187 LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS 246
           L+ L  L L  N+I  L   +F  L  L  L L  NKLQ   L + VFD           
Sbjct: 51  LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ--SLPNGVFD----------- 97

Query: 247 FSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
                            L  L+ LA+D N +K++ +     LTSL  I L  N
Sbjct: 98  ----------------KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
           +   L +++N ++++ +     LT L  ++L  N+I  + + +F  +   +L  + L  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF--DKLTKLTILYLHEN 86

Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQ 374
            L+ + +  F  L +L  + L  N LKS+    F  L ++  I L  N 
Sbjct: 87  KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA 501
             +  ++  +  VP         S  +L L+ N+++ L    F  L  L  LSL  N I 
Sbjct: 10  TEIRCNSKGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65

Query: 502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
            +    F  +  L I+ L  N++  L    F    +L+ L +  N+L+S+P  +F  
Sbjct: 66  SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 59/324 (18%), Positives = 113/324 (34%), Gaps = 57/324 (17%)

Query: 290 SLNYINLEYNKISK--IHNNLFHFNIHKRLKEIRLSNNYLELIE----SDTFYNLKELNT 343
           S+   +L+ + I+     +          +KEI LS N +        S+   + K+L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN 403
              S      +K    + L  +L               A +  P L  + L DN      
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNAFGPTA 110

Query: 404 LNVFSNITSKQTPM-NLNLSNNYIT------------NLYENDKKQAPIYIKSLDLSNNR 450
                +  SK TP+ +L L NN +              L  N K +    ++S+    NR
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 451 IQEVPVNFL-QTFAD--SLRKLYLDFNEI-----KHLDATAFGNLDVLELLSLEHNNI-- 500
           ++   +    +TF     L  + +  N I     +HL          L++L L+ N    
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 501 --AVVVKRTFIGMPNLQIIDLSFNEIS------MLTGEQFYFSFKLRILNISHNRL---- 548
             +  +       PNL+ + L+   +S      ++       +  L+ L + +N +    
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 549 -RSLPRDVFSN-TIIEKLDISYNQ 570
            R+L   +      +  L+++ N+
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGNR 314

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 51/286 (17%), Positives = 89/286 (31%), Gaps = 47/286 (16%)

Query: 261 NKNLNTLEWLAMDNNNIKNIRN-------YSLYNLTSLNYINLEYNKISKIHNNLF--HF 311
            K+L   E+  +    +K+           +L     L+ + L  N              
Sbjct: 59  KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 312 NIHKRLKEIRLSNNYL-------------ELIESDTFYNLKELNTITLSYNLLKSIKTTS 358
           + H  L+ + L NN L             EL  +    N   L +I    N L++     
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178

Query: 359 ----FKNLNNMLNIVLSFNQI-----KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSN 409
               F++   +  + +  N I     +++          L  LDLQDN       +  + 
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 410 -ITSKQTPMNLNLSNNYITN-----LYENDKKQAPIYIKSLDLSNNRIQEVPVNFL---- 459
            + S      L L++  ++      + +   K   I +++L L  N I+   V  L    
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298

Query: 460 QTFADSLRKLYLDFNEIKHLDAT------AFGNLDVLELLSLEHNN 499
                 L  L L+ N     D         F      EL  L+   
Sbjct: 299 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 344

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 18/223 (8%)

Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY 257
            KI ++    F+   NL+   +       +        + + +  + I     ++  F  
Sbjct: 110 EKIKNIEDAAFKGCDNLKICQIRKKTAPNL----LPEALADSVTAIFIPLGSSDAYRFKN 165

Query: 258 YILN------KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFH- 310
              +      + L T          +  + +  +        IN       K+ N  F  
Sbjct: 166 RWEHFAFIEGEPLETTI----QVGAMGKLEDEIMKAGLQPRDINFL-TIEGKLDNADFKL 220

Query: 311 -FNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIV 369
             +    L  + +S      I   TF   K L  I L +NL K+I    F N   +   +
Sbjct: 221 IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL-KTIGQRVFSNCGRLAGTL 279

Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITS 412
                +  I   AF+   NL  +    +K+      +F N   
Sbjct: 280 ELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRL 322
           N      L +    I  I N     L   + I+   N+I K+      F + +RLK + +
Sbjct: 17  NAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG----FPLLRRLKTLLV 71

Query: 323 SNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TSFKNLNNMLNIVLSFN---QIKYI 378
           +NN +  I       L +L  + L+ N L  +       +L ++  + +  N     K+ 
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131

Query: 379 YPNAFVNLPNLVKLDLQDNKLKD 401
                  +P +  LD Q  KLK+
Sbjct: 132 RLYVIYKVPQVRVLDFQKVKLKE 154

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 15/138 (10%)

Query: 295 NLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIE--SDTFYNLKELNTITLSYNLLK 352
            L    I +       +    R +E+ L    + +IE    T      ++    S N ++
Sbjct: 3   KLTAELIEQAAQ----YTNAVRDRELDLRGYKIPVIENLGATLDQFDAID---FSDNEIR 55

Query: 353 SIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNIT 411
            +    F  L  +  ++++ N+I  I       LP+L +L L +N L +   L+  +++ 
Sbjct: 56  KLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113

Query: 412 SKQTPMNLNLSNNYITNL 429
           S      L +  N +TN 
Sbjct: 114 SLTY---LCILRNPVTNK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 35/152 (23%)

Query: 176 NEDQVSDREKL--LSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV 233
             + +    +         L LR  KI  +  NL   L     +  S N+++ ++     
Sbjct: 5   TAELIEQAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD----- 58

Query: 234 FDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNY 293
                                FP       L  L+ L ++NN I  I       L  L  
Sbjct: 59  --------------------GFP------LLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92

Query: 294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
           + L  N + ++  +L      K L  + +  N
Sbjct: 93  LILTNNSLVEL-GDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 14/153 (9%)

Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
           L+   I+      + N     +LDL+  K+     N+ + +        ++ S+N I  L
Sbjct: 4   LTAELIEQA--AQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDA---IDFSDNEIRKL 57

Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHL-DATAFGNLD 488
              D       +K+L ++NNRI  +     Q     L +L L  N +  L D     +L 
Sbjct: 58  ---DGFPLLRRLKTLLVNNNRICRIGEGLDQAL-PDLTELILTNNSLVELGDLDPLASLK 113

Query: 489 VLELLSLEHNNIAVVV---KRTFIGMPNLQIID 518
            L  L +  N +             +P ++++D
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
           + L+   I++             R+L L   +I  ++      LD  + +    N I  +
Sbjct: 2   VKLTAELIEQAAQYTNAV---RDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL 57

Query: 504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
               F  +  L+ + ++ N I  +          L  L +++N L  L
Sbjct: 58  --DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 16/167 (9%)

Query: 275 NNIKNIRNYSLYNLTSLNYINL--EYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
           + I+          T    + L      I K+   L      K  K + LS N +E I S
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTL---KACKHLALSTNNIEKISS 65

Query: 333 -DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVK 391
                NL+ L+   L  NL+K I+       + +  + +S+NQI  +       L NL  
Sbjct: 66  LSGMENLRILS---LGRNLIKKIENLD-AVADTLEELWISYNQIASLSG--IEKLVNLRV 119

Query: 392 LDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA 437
           L + +NK+ ++  ++  + +   +    L L+ N + N Y+ +   +
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLED---LLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 35/154 (22%)

Query: 172 NNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNS 231
                 +++      L   + L L  N I  ++      + NL+ LSL  N ++ IE   
Sbjct: 32  GMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIEN-- 87

Query: 232 NVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSL 291
                                       L+   +TLE L +  N I ++    +  L +L
Sbjct: 88  ----------------------------LDAVADTLEELWISYNQIASLSG--IEKLVNL 117

Query: 292 NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
             + +  NKI+     +       +L+++ L+ N
Sbjct: 118 RVLYMSNNKITNW-GEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 18/143 (12%)

Query: 262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR 321
             L   + LA+  NNI+ I +  L  + +L  ++L  N I KI N      +   L+E+ 
Sbjct: 45  STLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENL---DAVADTLEELW 99

Query: 322 LSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TSFKNLNNMLNIVLSFNQIKYIYP 380
           +S N +  +       L  L  + +S N + +         L+ + +++L+ N +   Y 
Sbjct: 100 ISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

Query: 381 NA----------FVNLPNLVKLD 393
                          LPNL KLD
Sbjct: 158 ENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 468 KLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISML 527
           +L+     I+ +DAT    L   + L+L  NNI  +   +  GM NL+I+ L  N I  +
Sbjct: 29  ELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKI 85

Query: 528 TGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ 570
                     L  L IS+N++ SL   +     +  L +S N+
Sbjct: 86  ENLDAVAD-TLEELWISYNQIASL-SGIEKLVNLRVLYMSNNK 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 12/160 (7%)

Query: 389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSN 448
           + K     + ++ F     S + ++   + L+     I  +            K L LS 
Sbjct: 1   MAKATTIKDAIRIFE-ERKSVVATEAEKVELHGMIPPIEKMDATLSTL--KACKHLALST 57

Query: 449 NRIQEV-PVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRT 507
           N I+++  ++ ++    +LR L L  N IK ++       D LE L + +N IA +    
Sbjct: 58  NNIEKISSLSGME----NLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASL--SG 110

Query: 508 FIGMPNLQIIDLSFNEISMLTGEQFYFSFK-LRILNISHN 546
              + NL+++ +S N+I+         +   L  L ++ N
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 16/140 (11%)

Query: 389 LVKLDLQDNKLK--DFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDL 446
            V+L      ++  D  L+             L LS N I  +  +        ++ L L
Sbjct: 27  KVELHGMIPPIEKMDATLSTLKACKH------LALSTNNIEKI-SSLSGM--ENLRILSL 77

Query: 447 SNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK- 505
             N I+++    L   AD+L +L++ +N+I  L       L  L +L + +N I    + 
Sbjct: 78  GRNLIKKI--ENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEI 133

Query: 506 RTFIGMPNLQIIDLSFNEIS 525
                +  L+ + L+ N + 
Sbjct: 134 DKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 15/142 (10%)

Query: 91  DKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHL--GTTILKDREKL--LSNLETLLL 146
                 E++ L      +    M    S +   +HL   T  ++    L  + NL  L L
Sbjct: 20  VVATEAEKVELHGMIPPIE--KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSL 77

Query: 147 RCNKITDLNG--NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLN 204
             N I  +     +   L++  +     + N    +S  EKL  NL  L +  NKIT+  
Sbjct: 78  GRNLIKKIENLDAVADTLEELWI-----SYNQIASLSGIEKL-VNLRVLYMSNNKITNWG 131

Query: 205 G-NLFRHLYNLQELSLSFNKLQ 225
             +    L  L++L L+ N L 
Sbjct: 132 EIDKLAALDKLEDLLLAGNPLY 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 9/148 (6%)

Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
           + N+    +  L +DN    + +   L     +L +++L    +  + N         +L
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN----LPKLPKL 73

Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TSFKNLNNMLNIVLSFNQI- 375
           K++ LS N +          L  L  + LS N LK I T    K L  + ++ L   ++ 
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

Query: 376 --KYIYPNAFVNLPNLVKLDLQDNKLKD 401
                  + F  LP L  LD  D + ++
Sbjct: 134 NLNDYRESVFKLLPQLTYLDGYDREDQE 161

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 317 LKEIRLSNNYLELIESDTFY-NLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
           ++E+ L N      + +        L  ++L    L S+  ++   L  +  + LS N+I
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI 83

Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFN-LNVFSNITSKQTPMNLNLSNNYITNL 429
                     LPNL  L+L  NKLKD + L     +   ++   L+L N  +TNL
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS---LDLFNCEVTNL 135

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 4/113 (3%)

Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK 477
            L L N    +          + ++ L L N  +  V  + L      L+KL L  N I 
Sbjct: 28  ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIF 84

Query: 478 HLDATAFGNLDVLELLSLEHNNIAVVVK-RTFIGMPNLQIIDLSFNEISMLTG 529
                    L  L  L+L  N +  +        +  L+ +DL   E++ L  
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 9/118 (7%)

Query: 209 RHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNE-FPYYILNKNLNTL 267
           R    ++EL L   K    ++   +   F  L+ L +      S    P       L  L
Sbjct: 21  RTPAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISVSNLP------KLPKL 73

Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
           + L +  N I    +     L +L ++NL  NK+  I + L      + LK + L N 
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 9/140 (6%)

Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLY-NLTSLNYINLEYNKISKIHNNLFHFNIHKRL 317
           + N+  + ++ L +DN+     +   L      L +++     ++ I N         +L
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN----LPKLNKL 66

Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKT-TSFKNLNNMLNIVLSFN--- 373
           K++ LS+N +             L  + LS N +K + T    K L N+ ++ L      
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

Query: 374 QIKYIYPNAFVNLPNLVKLD 393
            +     N F  LP L  LD
Sbjct: 127 NLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 19/121 (15%)

Query: 317 LKEIRLSNNYLELIE----SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF 372
           +KE+ L N+     +    +D F  L+ L+        L SI   +   LN +  + LS 
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLS---TINVGLTSI--ANLPKLNKLKKLELSD 73

Query: 373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN----LNVFSNITSKQTPMNLNLSNNYITN 428
           N++           PNL  L+L  NK+KD +    L    N+ S      L+L N  +TN
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS------LDLFNCEVTN 127

Query: 429 L 429
           L
Sbjct: 128 L 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 272 MDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIE 331
           M       +RN +  ++  L   N   N+           +  + L+ +   N  L  I 
Sbjct: 3   MGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLT----DEFEELEFLSTINVGLTSIA 58

Query: 332 SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIY-PNAFVNLPNLV 390
           +     L +L  + LS N +        +   N+ ++ LS N+IK +        L NL 
Sbjct: 59  N--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116

Query: 391 KLDLQDN 397
            LDL + 
Sbjct: 117 SLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 360 KNLNNMLNIVLSFNQIKYIY-PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN 418
           +  +++  +VL  ++               L  L   +  L    +     +   +    
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKK--- 68

Query: 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP-VNFLQTFADSLRKLYLDFNEIK 477
           L LS+N ++   E   ++ P  +  L+LS N+I+++  +  L+   ++L+ L L   E+ 
Sbjct: 69  LELSDNRVSGGLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKL-ENLKSLDLFNCEVT 126

Query: 478 HLD 480
           +L+
Sbjct: 127 NLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 33/144 (22%)

Query: 183 REKLLSNLETLLLRCNKITDL-NGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ 241
           R +  S+++ L+L  ++  +     L      L+ LS     L  I           KL 
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-------NLPKL- 63

Query: 242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKI 301
                                  N L+ L + +N +            +L ++NL  NKI
Sbjct: 64  -----------------------NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 302 SKIHNNLFHFNIHKRLKEIRLSNN 325
             + + +      + LK + L N 
Sbjct: 101 KDL-STIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH 478
           L L N+                ++ L   N  +  +    L      L+KL L  N +  
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLN-KLKKLELSDNRVSG 78

Query: 479 LDATAFGNLDVLELLSLEHNNIAVVVK-RTFIGMPNLQIIDLSFNEISMLTG 529
                      L  L+L  N I  +        + NL+ +DL   E++ L  
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 463 ADSLRKLYLDFNEIKHLDATAFG-NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF 521
              +++L LD +              + LE LS  +  +  +       +  L+ ++LS 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD 73

Query: 522 NEISMLTGEQFYFSFKLRILNISHNRLRSL 551
           N +S            L  LN+S N+++ L
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 275 NNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDT 334
           + ++ ++    Y   +L   +L   KI+K+  + F +     ++E+ L    L+ I S  
Sbjct: 166 STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYA---GIEEVLLPVT-LKEIGSQA 221

Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL 394
           F    +L TI +  N + +I   +F+  + +  + L  N +  I   AF   P L ++  
Sbjct: 222 FLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTT 278

Query: 395 QDNKLKDFNL-----NVFSNITS 412
             +   D                
Sbjct: 279 YGSTFNDDPEAMIHPYCLEGCPK 301

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 14/111 (12%), Positives = 36/111 (32%), Gaps = 5/111 (4%)

Query: 273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES 332
           +++    I  Y L     L    +    I  +   L   N  +++ ++ +  N +  I  
Sbjct: 284 NDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN--RKVTQLTIPAN-VTQINF 339

Query: 333 DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAF 383
             F N   +  + +       +    +    + + ++    +    Y NA 
Sbjct: 340 SAFNNTG-IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYKNAN 389

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 29/112 (25%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
           +  + L L  N+IT L   +F  L  L  L L  N+L    L + VFD            
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT--VLPAGVFD------------ 75

Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
                           L  L  L++++N +K+I   +  NL SL +I L  N
Sbjct: 76  ---------------KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 24/86 (27%), Positives = 39/86 (45%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
            I    + + L +N +  +E   F  L +L  + L  N L  +    F  L  +  + L+
Sbjct: 27  GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDN 397
            NQ+K I   AF NL +L  + L +N
Sbjct: 87  DNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
           L  N +  ++   F  L  +  + L  NQ+  +    F  L  L +L L DN+LK     
Sbjct: 37  LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96

Query: 406 VFSNITSKQTPMNLNLSNN 424
            F N+ S      + L NN
Sbjct: 97  AFDNLKSLTH---IWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 29/112 (25%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISF 247
           ++ + L L  N+IT L   +F HL NLQ+L  + NKL    + + VFD            
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT--AIPTGVFD------------ 78

Query: 248 SLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN 299
                           L  L  L +++N++K+I   +  NL SL +I L  N
Sbjct: 79  ---------------KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 41/86 (47%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
            I    + + L+NN +  +E   F +L  L  +  + N L +I T  F  L  +  + L+
Sbjct: 30  GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDN 397
            N +K I   AF NL +L  + L +N
Sbjct: 90  DNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLN 405
           L+ N +  ++   F +L N+  +  + N++  I    F  L  L +LDL DN LK     
Sbjct: 40  LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99

Query: 406 VFSNITSKQTPMNLNLSNN 424
            F N+ S      + L NN
Sbjct: 100 AFDNLKSLTH---IYLYNN 115

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 39/277 (14%), Positives = 87/277 (31%), Gaps = 47/277 (16%)

Query: 337 NLKELNTITLSYNLL-----KSIKTTSFKNLNNMLNIVLSFNQI-----KYIYPNAFVNL 386
            +  L+   LS N L       +         ++ ++ LS N +       +        
Sbjct: 23  GVTSLD---LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 387 PNLVKLDLQDNKLKDFNLNVFSNI--TSKQTPMNLNLSNNYITN-----LYENDKKQAPI 439
            N+  L+L  N L   + +           T   L+L  N  ++       +      P 
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL-PA 138

Query: 440 YIKSLDLSNNRIQEVPVNF----LQTFADSLRKLYLDFNEIKHLDATAFGNL-----DVL 490
            I SL+L  N +     +     L     ++  L L  N +   +              +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 491 ELLSLEHNNI----AVVVKRTFIGMPN-LQIIDLSFNEISMLTGEQFYFSFK----LRIL 541
             L L  N +       +   F  +PN +  ++L  N +   + E           L+ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 542 NISHNRLRSLPRDVF--------SNTIIEKLDISYNQ 570
            + ++ ++++ ++          +   I  +D +  +
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 49/281 (17%), Positives = 102/281 (36%), Gaps = 41/281 (14%)

Query: 260 LNKNLNTLEWLAMDNNNI-----KNIRNYSLYNLTSLNYINLEYNKISKIH-NNLFHF-- 311
                + +  L +  NN+       +         S+  +NL  N +   + + L     
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 312 NIHKRLKEIRLSNNYL-----ELIESDTFYNLKELNTITLSYNLLKSIKTT----SFKNL 362
            I   +  + LS N+L     + +          +  + L +N   S  ++    +F NL
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 363 N-NMLNIVLSFNQI-----KYIYPNAFVNLP-NLVKLDLQDNKLKDFNLNVFSN--ITSK 413
             ++ ++ L  N +       +       +P N+  L+L+ N L   N    +    +  
Sbjct: 137 PASITSLNLRGNDLGIKSSDELI-QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 414 QTPMNLNLSNNYITN----LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD---SL 466
            +  +L+LS N +               P ++ SL+L  N +    +  L+   D    L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 467 RKLYLDFNEIKHLD-------ATAFGNLDVLELLSLEHNNI 500
           + +YLD++ +K++          AF N+  + L+      I
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 70/472 (14%), Positives = 148/472 (31%), Gaps = 83/472 (17%)

Query: 141 LETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKI 200
            + L  R   +  L            +  +         V++    L  L+++  R   +
Sbjct: 65  PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIV 124

Query: 201 TD--LNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY 258
           +D  L+        +L+ L L           S          LL I             
Sbjct: 125 SDLDLDRLAKARADDLETLKLDK--------CSGFTTDG----LLSIV------------ 160

Query: 259 ILNKNLNTLEWLAMDNNNIKNIRNYSLY----NLTSLNYINLEYNKISKIHNN-LFHFNI 313
               +   ++ L M+ ++        L+    + TSL  +N    + +KI    L     
Sbjct: 161 ---THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217

Query: 314 H-KRLKEIRLSNNYLELIESDTFY----NLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
           + + L  +++ +   E++E   F+    NL+E    +L+ ++    K  +      +  +
Sbjct: 218 NCRSLVSVKVGD--FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITN 428
            LS+     + P  F     + KLDL    L+  +    + I        L   N  I +
Sbjct: 276 GLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDH--CTLIQKCPNLEVLETRNV-IGD 331

Query: 429 -----LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD-----------SLRKLYLD 472
                L +  K+     +K L +     ++   +     +             L  + + 
Sbjct: 332 RGLEVLAQYCKQ-----LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386

Query: 473 FNEIKHLDATAFG----NLDVLELLSLEHNN------IAVVVKRTFIGMPNLQIIDLSFN 522
            ++I +    + G    NL    L+ L+         +   V+   IG   L+       
Sbjct: 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

Query: 523 EISMLTGEQFYF----SFKLRILNISHNRL--RSLPRDVFSNTIIEKLDISY 568
           +   LT     +    S  +R + + +       L         ++KL++  
Sbjct: 447 Q-GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 32/179 (17%)

Query: 419 LNLSNNYITN---------LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL 469
           LNL+   +T          L           +  ++L++ ++    +  L       RKL
Sbjct: 77  LNLAGVRMTPVKCTVVAAVLGSGRHA-----LDEVNLASCQLDPAGLRTLLPVFLRARKL 131

Query: 470 YLDFNEIKHLDATAFG-----NLDVLELLSLEHNNI----AVVVKRTFIGMPNLQIIDLS 520
            L  N +              +   +  L L +N +      V+     G  ++  + L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 521 FNEIS----MLTGEQFYFSFKLRILNISHNRL-----RSLPRDVFSNTIIEKLDISYNQ 570
              +      L   Q   + +L+ LN+++N        +L R    +  +E L + +N+
Sbjct: 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 28/171 (16%)

Query: 78  TNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKL 137
              +  E    +  K  +  Q  LDL   +     +A     V   +      L+  E+ 
Sbjct: 109 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEEN 168

Query: 138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRC 197
           +  L +L L  N++  L+                        +S   +   NL+ L L  
Sbjct: 169 IPELLSLNLSNNRLYRLDD-----------------------MSSIVQKAPNLKILNLSG 205

Query: 198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIELN-----SNVFDVFEKLQLL 243
           N++             L+EL L  N L     +     S + + F KL  L
Sbjct: 206 NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 55/416 (13%), Positives = 136/416 (32%), Gaps = 33/416 (7%)

Query: 140 NLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNK 199
           +  T++ R  K+  +      H     +            +       + LE + L+   
Sbjct: 57  SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV 116

Query: 200 ITDLN-GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY- 257
           +TD     + +   N + L LS  +    +  + +      L+ L++  S  +     + 
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176

Query: 258 YILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK---IHNNLFHFNIH 314
                   +L  L +       +   +L  L +    NL+  K+++   +          
Sbjct: 177 SHFPDTYTSLVSLNISCLA-SEVSFSALERLVT-RCPNLKSLKLNRAVPLEKLATLLQRA 234

Query: 315 KRLKEIRLSNNYLELIE------SDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
            +L+E+       E+        S      KEL  ++  ++ + +     +   + +  +
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294

Query: 369 VLSFNQIKYIYPNAFV-NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT 427
            LS+  ++       +   P L +L + D  ++D  L V ++       + +  S  ++ 
Sbjct: 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVM 353

Query: 428 NLYENDKKQAPIYI-------KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLD 480
                  +Q  + +       +S+     ++    +  +     ++ +  L   E K  D
Sbjct: 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413

Query: 481 ATAFGNLDV-----------LELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS 525
                 LD+           L  LSL       V +        ++++ ++F   S
Sbjct: 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS 469

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQ 225
            +   L+L  N +T L   L   L  L+   L  N  +
Sbjct: 31  VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	584
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.6
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.57
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.54
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.92
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.88
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.87
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.58

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.9e-56  Score=485.01  Aligned_cols=555  Identities=23%  Similarity=0.184  Sum_probs=377.1

Q ss_pred             ccccCCCcccee---ccccccccchhhhccccccccccccccccc-----ccceeeeecCCceeecCCc--cccccccce
Q psy11648          2 TLDLSHNKLSVL---NMATLYSNVTKLQHLGTTILKGDQLQGIFN-----SKLRELEITGKDLKFIDPS--AFDNIDACY   71 (584)
Q Consensus         2 ~l~ls~~~~~~~---~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~-----~~L~~L~ls~n~~~~~~~~--~~~~~~~~L   71 (584)
                      .|||+++.+++.   .+.+    +..+++|+.++++.+.+..+|.     ++|++|++++|.+.+..+.  .+.++ ++|
T Consensus        54 ~L~L~~~~l~g~~~~l~~~----l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-~~L  128 (768)
T 3rgz_A           54 SIDLSSKPLNVGFSAVSSS----LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SGL  128 (768)
T ss_dssp             EEECTTSCCCEEHHHHHHH----TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC-TTC
T ss_pred             EEECCCCCcCCccCccChh----HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCC-CCC
Confidence            578888888764   3332    4455556555555555544333     5666666666666554444  55555 556


Q ss_pred             eeEEEecCcccc-cccccccccccccceeeeecCCCceeeechhh---hccchhccc-----------------------
Q psy11648         72 DLTLKITNTQIE-ELPSGLFDKIENIEQMTLDLSHNKLSVLNMAT---LYSNVTKLQ-----------------------  124 (584)
Q Consensus        72 ~~~L~ls~n~i~-~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~---~~~~~~l~~-----------------------  124 (584)
                      + +|++++|.+. .+|..++....+|+  +||+++|.+++..+..   +..+..+..                       
T Consensus       129 ~-~L~Ls~n~l~~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L  205 (768)
T 3rgz_A          129 K-FLNVSSNTLDFPGKVSGGLKLNSLE--VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL  205 (768)
T ss_dssp             C-EEECCSSEEECCSSCCSCCCCTTCS--EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred             C-EEECcCCccCCcCCHHHhccCCCCC--EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence            6 6666666554 33444433444466  6666666665555443   222222211                       


Q ss_pred             ---ccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcc
Q psy11648        125 ---HLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKI  200 (584)
Q Consensus       125 ---~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~  200 (584)
                         .|.+++.++.+.++++|++|++++|.+++..+..+. .+++|++|+++ +......+..   .+++|++|++++|.+
T Consensus       206 ~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l  281 (768)
T 3rgz_A          206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKF  281 (768)
T ss_dssp             ECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTT-TCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEE
T ss_pred             ECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHh-cCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCcc
Confidence               344443222255555555555555555443333322 22345555555 2222222211   345555555555555


Q ss_pred             cccchhhhcC-CCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccc
Q psy11648        201 TDLNGNLFRH-LYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKN  279 (584)
Q Consensus       201 ~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~  279 (584)
                      ++..+..+.. +++|++|++++|.+.+.  .+..+..+++|++|++++|.+. +.+|...+ ..+++|++|++++|.+++
T Consensus       282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~-~~ip~~~l-~~l~~L~~L~Ls~n~l~~  357 (768)
T 3rgz_A          282 TGEIPDFLSGACDTLTGLDLSGNHFYGA--VPPFFGSCSLLESLALSSNNFS-GELPMDTL-LKMRGLKVLDLSFNEFSG  357 (768)
T ss_dssp             EESCCCCSCTTCTTCSEEECCSSEEEEC--CCGGGGGCTTCCEEECCSSEEE-EECCHHHH-TTCTTCCEEECCSSEEEE
T ss_pred             CCccCHHHHhhcCcCCEEECcCCcCCCc--cchHHhcCCCccEEECCCCccc-CcCCHHHH-hcCCCCCEEeCcCCccCc
Confidence            5444444443 36777777777766655  5666777777777777777665 56666544 677777777777777765


Q ss_pred             cccccccCCC-CCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhh
Q psy11648        280 IRNYSLYNLT-SLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTS  358 (584)
Q Consensus       280 ~~~~~l~~l~-~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  358 (584)
                      ..+..+..++ +|++|++++|.+.......+....+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..
T Consensus       358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  437 (768)
T 3rgz_A          358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS  437 (768)
T ss_dssp             CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence            5555666665 677777777766532222222112567888888888888777778888889999999999888888888


Q ss_pred             hccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcccccccccccccc
Q psy11648        359 FKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAP  438 (584)
Q Consensus       359 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~  438 (584)
                      +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+..   ++.|+.|++++|++++..+.. +..+
T Consensus       438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~---l~~L~~L~L~~N~l~~~~p~~-~~~l  513 (768)
T 3rgz_A          438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN---CTNLNWISLSNNRLTGEIPKW-IGRL  513 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG---CTTCCEEECCSSCCCSCCCGG-GGGC
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc---CCCCCEEEccCCccCCcCChH-HhcC
Confidence            888899999999999888887888888899999999999888776665543   468889999999888554433 3347


Q ss_pred             CcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCcc------------------------------------
Q psy11648        439 IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDAT------------------------------------  482 (584)
Q Consensus       439 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------------------------------  482 (584)
                      ++|++|++++|.+....+..+..+ ++|+.|++++|++.+..|.                                    
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN  592 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence            889999999998874444667777 8899999998877643222                                    


Q ss_pred             ----------------------------------ccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcC
Q psy11648        483 ----------------------------------AFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLT  528 (584)
Q Consensus       483 ----------------------------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  528 (584)
                                                        .+..+++|+.||+++|.+++.+|..++.+++|+.|++++|++++.+
T Consensus       593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  672 (768)
T 3rgz_A          593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI  672 (768)
T ss_dssp             EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence                                              2445678999999999999999999999999999999999999999


Q ss_pred             cccccCCCCccEEEcCCCcCC-ccCccccCCCCcceEECCCCCCC-CCCCC
Q psy11648        529 GEQFYFSFKLRILNISHNRLR-SLPRDVFSNTIIEKLDISYNQDK-IRPGR  577 (584)
Q Consensus       529 ~~~~~~~~~L~~L~L~~n~l~-~lp~~l~~~~~L~~l~l~~n~l~-~~p~~  577 (584)
                      |..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ .+|+.
T Consensus       673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            999999999999999999999 78999999999999999999998 77764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-55  Score=479.25  Aligned_cols=547  Identities=20%  Similarity=0.181  Sum_probs=417.2

Q ss_pred             CccccCCCccceeccccccccchhhhcccccccccccccc-ccc------ccceeeeecCCceeecCCcc---ccccccc
Q psy11648          1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQG-IFN------SKLRELEITGKDLKFIDPSA---FDNIDAC   70 (584)
Q Consensus         1 ~~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~-l~~------~~L~~L~ls~n~~~~~~~~~---~~~~~~~   70 (584)
                      ++||||+|.+++..+..  ..++.+++||+|++++|.++. +|.      ++|++|++++|.+.+..+..   +.++ ++
T Consensus       103 ~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l-~~  179 (768)
T 3rgz_A          103 TSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC-GE  179 (768)
T ss_dssp             CEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC-TT
T ss_pred             CEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC-CC
Confidence            56888888888765541  127788888888998888775 332      78888888888888876655   5665 77


Q ss_pred             eeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhccc----ccCce-eccchhhcCCccceee
Q psy11648         71 YDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ----HLGTT-ILKDREKLLSNLETLL  145 (584)
Q Consensus        71 L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~-~l~~~l~~~~~L~~L~  145 (584)
                      |+ +|++++|.+......  ..+.+|+  +|++++|.+.+..+. ++.+..+..    .|.++ .+|..+.++++|++|+
T Consensus       180 L~-~L~Ls~n~l~~~~~~--~~l~~L~--~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  253 (768)
T 3rgz_A          180 LK-HLAISGNKISGDVDV--SRCVNLE--FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN  253 (768)
T ss_dssp             CC-EEECCSSEEESCCBC--TTCTTCC--EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred             CC-EEECCCCcccccCCc--ccCCcCC--EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence            88 888888877743332  4455588  888888888775555 666655433    67777 5677888888888888


Q ss_pred             ccccccccccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCcc
Q psy11648        146 LRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKL  224 (584)
Q Consensus       146 l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  224 (584)
                      +++|.+.+..+..   .+++|++|+++ +......+..+...+++|++|++++|.+.+..+..++++++|++|++++|.+
T Consensus       254 Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  330 (768)
T 3rgz_A          254 ISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF  330 (768)
T ss_dssp             CCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             CCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence            8888877654433   45678888888 4444345555543458888888888888877777888888888888888887


Q ss_pred             ceeecCCcc-ccccccceEEeecccccCCCCchhhHhhhcCC-CCCEEEccCccccccccccccC--CCCCcEEEcccCC
Q psy11648        225 QIIELNSNV-FDVFEKLQLLEISFSLFNSNEFPYYILNKNLN-TLEWLAMDNNNIKNIRNYSLYN--LTSLNYINLEYNK  300 (584)
Q Consensus       225 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~l~~--l~~L~~L~l~~~~  300 (584)
                      .+.  .+.. +..+++|++|++++|.+. +.+|..+  ..++ +|++|++++|.+++..+..+..  +++|++|++++|.
T Consensus       331 ~~~--ip~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l--~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~  405 (768)
T 3rgz_A          331 SGE--LPMDTLLKMRGLKVLDLSFNEFS-GELPESL--TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG  405 (768)
T ss_dssp             EEE--CCHHHHTTCTTCCEEECCSSEEE-ECCCTTH--HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred             cCc--CCHHHHhcCCCCCEEeCcCCccC-ccccHHH--HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence            754  4544 788888888888888876 5677766  3555 8888888888887655555555  6778888888888


Q ss_pred             CcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCC
Q psy11648        301 ISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP  380 (584)
Q Consensus       301 l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  380 (584)
                      ++...+..+..  +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus       406 l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  483 (768)
T 3rgz_A          406 FTGKIPPTLSN--CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP  483 (768)
T ss_dssp             EEEECCGGGGG--CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccCHHHhc--CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence            77444444444  7888888888888887777778888888888888888887777778888888888888888887777


Q ss_pred             ccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCC-CCChhhH
Q psy11648        381 NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ-EVPVNFL  459 (584)
Q Consensus       381 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~  459 (584)
                      ..+..+++|++|++++|.+++..+..+..   ++.|+.|++++|++.+..+.. ...+++|+.|++++|.+. .+|...+
T Consensus       484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~---l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          484 SGLSNCTNLNWISLSNNRLTGEIPKWIGR---LENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGG---CTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred             HHHhcCCCCCEEEccCCccCCcCChHHhc---CCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHh
Confidence            78888888888888888888766665544   457888888888877544332 334778888888888765 4443322


Q ss_pred             ---------------------------------------------------------------------HHhhCCCcEEE
Q psy11648        460 ---------------------------------------------------------------------QTFADSLRKLY  470 (584)
Q Consensus       460 ---------------------------------------------------------------------~~~~~~L~~L~  470 (584)
                                                                                           ..+ ++|+.|+
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l-~~L~~Ld  638 (768)
T 3rgz_A          560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLD  638 (768)
T ss_dssp             TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS-BCCCEEE
T ss_pred             cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc-ccccEEE
Confidence                                                                                 223 6789999


Q ss_pred             ccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648        471 LDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       471 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      +++|++.+..|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..++.|++|++++|++++
T Consensus       639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             -cCccccCCCCcceEECCCCCCC
Q psy11648        551 -LPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       551 -lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                       +|. ...+.++....+.+|+.-
T Consensus       719 ~iP~-~~~~~~~~~~~~~gN~~L  740 (768)
T 3rgz_A          719 PIPE-MGQFETFPPAKFLNNPGL  740 (768)
T ss_dssp             ECCS-SSSGGGSCGGGGCSCTEE
T ss_pred             cCCC-chhhccCCHHHhcCCchh
Confidence             664 455566677777788643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.9e-53  Score=458.79  Aligned_cols=552  Identities=24%  Similarity=0.320  Sum_probs=408.6

Q ss_pred             CccccCCCccceeccccccccchhhhccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeE
Q psy11648          1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLT   74 (584)
Q Consensus         1 ~~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~   74 (584)
                      ++|++++|.|+++++.+    +..+++||+|++++|.+++++.      ++|++|++++|.+.++....|.++ ++|+ +
T Consensus        28 ~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~-~  101 (680)
T 1ziw_A           28 TVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNLT-E  101 (680)
T ss_dssp             SEEECCSSCCCCCCGGG----GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC-TTCS-E
T ss_pred             cEEECCCCCCCCcCHHH----HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccC-CCCC-E
Confidence            35667777777666654    5566667777777777666543      667777777777776666666666 6677 7


Q ss_pred             EEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhccc----ccCceeccc-hh--hcCCccceeecc
Q psy11648         75 LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ----HLGTTILKD-RE--KLLSNLETLLLR  147 (584)
Q Consensus        75 L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~~l~~-~l--~~~~~L~~L~l~  147 (584)
                      |++++|++..++...|..+.+|+  +|++++|.+.+..+..++.+..+..    .|.++++++ .+  ..+++|++|+++
T Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~  179 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPFVKQKNLI--TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS  179 (680)
T ss_dssp             EECCSSCCCCCCSCTTTTCTTCC--EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred             EECCCCccCccChhHccccCCCC--EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence            77777777766666565555577  7777777666655555554444322    455554443 22  234566666666


Q ss_pred             ccccccccccccchhhHHHHHhhcCCC-CCCcccchhHh--hccCCcEEEcCCCcccccchhhhcCCCC--CCEEEcCCC
Q psy11648        148 CNKITDLNGNLFRHLQKSIVKAKKNNN-NNEDQVSDREK--LLSNLETLLLRCNKITDLNGNLFRHLYN--LQELSLSFN  222 (584)
Q Consensus       148 ~n~i~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~  222 (584)
                      +|.+++..+..+.. +++|+.+++++. ........+..  ..++|+.|+++++.+.+..+..+.+++.  |++|++++|
T Consensus       180 ~n~l~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n  258 (680)
T 1ziw_A          180 SNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN  258 (680)
T ss_dssp             TCCCCCBCTTGGGG-SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred             CCcccccChhhhhh-hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence            66665555444332 223444444311 11100000000  2378899999999988888878887754  999999999


Q ss_pred             ccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCcccc---------ccccccccCCCCCcE
Q psy11648        223 KLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK---------NIRNYSLYNLTSLNY  293 (584)
Q Consensus       223 ~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~---------~~~~~~l~~l~~L~~  293 (584)
                      .+.+.  .+..|..+++|++|++++|.+. +..+..+  ..+++|++|+++++...         .+....+..+++|++
T Consensus       259 ~l~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          259 NLNVV--GNDSFAWLPQLEYFFLEYNNIQ-HLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             CCCEE--CTTTTTTCTTCCEEECCSCCBS-EECTTTT--TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             CcCcc--CcccccCcccccEeeCCCCccC-ccChhhh--cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence            98887  6788999999999999999886 3334444  78999999999886433         222336788899999


Q ss_pred             EEcccCCCcccccccccccccCCccEEEcCCCccc--ccccccccC--CCCCcEEEccCCcCCCcChhhhccCcCCCEEe
Q psy11648        294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLE--LIESDTFYN--LKELNTITLSYNLLKSIKTTSFKNLNNMLNIV  369 (584)
Q Consensus       294 L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  369 (584)
                      |++++|.+..++...+..  +++|++|++++|.+.  ......+..  .+.|+.+++++|.+.++.+..+..+++|+.|+
T Consensus       334 L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  411 (680)
T 1ziw_A          334 LNMEDNDIPGIKSNMFTG--LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD  411 (680)
T ss_dssp             EECCSCCBCCCCTTTTTT--CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             EECCCCccCCCChhHhcc--ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence            999999999888777766  899999999998743  232223322  35899999999999988888889999999999


Q ss_pred             ccCCCCCccC-CccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccc-cccccccCcccEEEcc
Q psy11648        370 LSFNQIKYIY-PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE-NDKKQAPIYIKSLDLS  447 (584)
Q Consensus       370 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~  447 (584)
                      +++|.+.+.. +..+..+++|++|++++|.+.+.....+..   .+.++.+++++|.+..... ...+..+++|+.|+++
T Consensus       412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls  488 (680)
T 1ziw_A          412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL---VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS  488 (680)
T ss_dssp             CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTT---CTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred             CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhc---CcccccchhccccccccccCCcccccCCCCCEEECC
Confidence            9999987643 367889999999999999988777666554   4688999999998864322 2334568999999999


Q ss_pred             CCCCCCCChhhHHHhhCCCcEEEccCCcccccCc--------cccCCCcccCeeeccCcccccccccccCCCCCccEEEC
Q psy11648        448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA--------TAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL  519 (584)
Q Consensus       448 ~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  519 (584)
                      +|.++.+++..+.++ ++|++|++++|++.+...        ..+.++++|++|++++|.+....+..|..+++|++|++
T Consensus       489 ~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L  567 (680)
T 1ziw_A          489 NNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL  567 (680)
T ss_dssp             SSCCCCCCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCCcCChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence            999999998888888 999999999999886532        24788999999999999999776677999999999999


Q ss_pred             CCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc--CCCCcceEECCCCCCC
Q psy11648        520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF--SNTIIEKLDISYNQDK  572 (584)
Q Consensus       520 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~--~~~~L~~l~l~~n~l~  572 (584)
                      ++|+++++++..|..+++|++|++++|+++.++...+  .+++|+.+++++|++.
T Consensus       568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence            9999999999999999999999999999999887655  4699999999999998

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.9e-52  Score=452.35  Aligned_cols=554  Identities=23%  Similarity=0.292  Sum_probs=454.5

Q ss_pred             ccccCCCccceeccccccccchhhhccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeEE
Q psy11648          2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLTL   75 (584)
Q Consensus         2 ~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L   75 (584)
                      .+|.+++.++.++..     +.  +++++|++++|.+++++.      ++|++|++++|.+.++.+..+.++ ++|+ +|
T Consensus         8 ~~~cs~~~L~~ip~~-----~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~-~L   78 (680)
T 1ziw_A            8 VADCSHLKLTQVPDD-----LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLK-VL   78 (680)
T ss_dssp             EEECCSSCCSSCCSC-----SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCC-EE
T ss_pred             eeECCCCCccccccc-----cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcC-EE
Confidence            478899999987753     32  678888999999998775      899999999999999999999998 8999 99


Q ss_pred             EecCcccccccccccccccccceeeeecCCCceeeechhhhccchhccc----ccCceec-cchhhcCCccceeeccccc
Q psy11648         76 KITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ----HLGTTIL-KDREKLLSNLETLLLRCNK  150 (584)
Q Consensus        76 ~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~~l-~~~l~~~~~L~~L~l~~n~  150 (584)
                      ++++|++..+|...|..+.+|+  +|++++|.+.+..+..|+.+..+..    .|.++.. |..+.++++|++|++++|.
T Consensus        79 ~L~~n~l~~l~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A           79 NLQHNELSQLSDKTFAFCTNLT--ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK  156 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCS--EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred             ECCCCccCccChhhhccCCCCC--EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence            9999999999998888888899  9999999999888777877766543    6777754 4567888899999999988


Q ss_pred             cccccccccch-hhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhh---cCCCCCCEEEcCCCccc
Q psy11648        151 ITDLNGNLFRH-LQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLF---RHLYNLQELSLSFNKLQ  225 (584)
Q Consensus       151 i~~~~~~~~~~-~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~  225 (584)
                      +++..+..+.. .+++|+.|+++ +......+..+. .+++|+.|++.++.+.......+   ...++|++|++++|.+.
T Consensus       157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~  235 (680)
T 1ziw_A          157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS  235 (680)
T ss_dssp             CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred             ccccCHHHhhccccccccEEECCCCcccccChhhhh-hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence            88776655433 23578888888 566666676675 77888888888877654222111   13578999999999998


Q ss_pred             eeecCCcccccccc--ceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCc-
Q psy11648        226 IIELNSNVFDVFEK--LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS-  302 (584)
Q Consensus       226 ~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~-  302 (584)
                      +.  .+..+..++.  |++|++++|.+.  .++...+ ..+++|++|++++|.+++..+.++..+++|++|+++++... 
T Consensus       236 ~~--~~~~~~~l~~~~L~~L~Ls~n~l~--~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~  310 (680)
T 1ziw_A          236 TT--SNTTFLGLKWTNLTMLDLSYNNLN--VVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ  310 (680)
T ss_dssp             EE--CTTTTGGGGGSCCCEEECTTSCCC--EECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred             cc--ChhHhhccCcCCCCEEECCCCCcC--ccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence            87  7888888865  999999999986  4544444 79999999999999999988889999999999999986433 


Q ss_pred             --------ccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCC--cChhhhcc--CcCCCEEec
Q psy11648        303 --------KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS--IKTTSFKN--LNNMLNIVL  370 (584)
Q Consensus       303 --------~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~--~~~L~~L~l  370 (584)
                              .+....+..  +++|++|++++|.+++..+..+..+++|+++++++|.+..  .....+..  .+.|+.+++
T Consensus       311 ~~~~~~lp~i~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L  388 (680)
T 1ziw_A          311 SISLASLPKIDDFSFQW--LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL  388 (680)
T ss_dssp             ------CCEECTTTTTT--CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred             ccccccccccChhhccc--CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence                    233334444  8999999999999999888889999999999999997542  22233333  368999999


Q ss_pred             cCCCCCccCCccCCCCCCCcEEecCCCCCCCC-ChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCC
Q psy11648        371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF-NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNN  449 (584)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~  449 (584)
                      ++|.+.+..+.++..+++|+.|++++|.+.+. +...+.   .++.++.+++++|.+.......+ ..+++|+.|++++|
T Consensus       389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~l~~n  464 (680)
T 1ziw_A          389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR---GLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRV  464 (680)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT---TCTTCCEEECCSCSEEECCTTTT-TTCTTCCEEECTTS
T ss_pred             CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc---CcccccEEecCCCCcceeChhhh-hcCcccccchhccc
Confidence            99999999888999999999999999998753 334443   45689999999999887765443 45899999999999


Q ss_pred             CCCC--CChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc--------cccCCCCCccEEEC
Q psy11648        450 RIQE--VPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK--------RTFIGMPNLQIIDL  519 (584)
Q Consensus       450 ~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--------~~~~~~~~L~~L~l  519 (584)
                      .+..  ..+..+..+ ++|+.|++++|++.++++..|.++++|++|++++|.+.+..+        ..|..+++|++|++
T Consensus       465 ~l~~~~~~p~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L  543 (680)
T 1ziw_A          465 ALKNVDSSPSPFQPL-RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL  543 (680)
T ss_dssp             CCBCTTCSSCTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred             cccccccCCcccccC-CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence            8752  223567777 999999999999999998899999999999999999987532        23788999999999


Q ss_pred             CCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc-CCCCcceEECCCCCCCCCCCCCC
Q psy11648        520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF-SNTIIEKLDISYNQDKIRPGRES  579 (584)
Q Consensus       520 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~-~~~~L~~l~l~~n~l~~~p~~~~  579 (584)
                      ++|+++.+++..|.++++|++|++++|+++.+|...+ .+++|+.|++++|.++.++...|
T Consensus       544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  604 (680)
T 1ziw_A          544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF  604 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred             CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence            9999999998899999999999999999999998765 56999999999999998887654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-50  Score=432.47  Aligned_cols=507  Identities=19%  Similarity=0.199  Sum_probs=384.3

Q ss_pred             ccccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCC
Q psy11648         29 GTTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSH  105 (584)
Q Consensus        29 r~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~  105 (584)
                      +++++++..++.+|.   +++++|++++|.++++.+..|.++ ++|+ +|++++|++..++...|....+|+  +|++++
T Consensus        15 ~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~-~L~Ls~n~i~~~~~~~~~~l~~L~--~L~Ls~   90 (606)
T 3t6q_A           15 KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRL-INLT-FLDLTRCQIYWIHEDTFQSQHRLD--TLVLTA   90 (606)
T ss_dssp             TEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTC-TTCS-EEECTTCCCCEECTTTTTTCTTCC--EEECTT
T ss_pred             ceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccC-ccce-EEECCCCccceeChhhccCccccC--eeeCCC
Confidence            345677777777666   677777777777777766677776 6777 777777777766666666666677  777777


Q ss_pred             CceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCcccchhH
Q psy11648        106 NKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDRE  184 (584)
Q Consensus       106 ~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~  184 (584)
                      |.+.+..+..|+.+                   ++|++|++++|.++++.+..+. .+++|++|+++ +....+....+.
T Consensus        91 n~l~~~~~~~~~~l-------------------~~L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~  150 (606)
T 3t6q_A           91 NPLIFMAETALSGP-------------------KALKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGF  150 (606)
T ss_dssp             CCCSEECTTTTSSC-------------------TTCCEEECTTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCCCCCTTC
T ss_pred             CcccccChhhhccc-------------------ccccEeeccccCcccCCcchhc-cCCcccEEECCCCcccccCccccc
Confidence            77666554444333                   3444444444444433332221 12234444444 222222222333


Q ss_pred             hhccCCcEEEcCCCcccccchhhhcCCCCCC--EEEcCCCccceeecCCccccccccceEEeecccccC-----------
Q psy11648        185 KLLSNLETLLLRCNKITDLNGNLFRHLYNLQ--ELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN-----------  251 (584)
Q Consensus       185 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~-----------  251 (584)
                       .+++|+.|++++|.++...+..++.+++|+  +|++++|.+.+.  .+..+.. .+|+.|++++|...           
T Consensus       151 -~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~--~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~  226 (606)
T 3t6q_A          151 -PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI--EPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNST  226 (606)
T ss_dssp             -CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE--CTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCE
T ss_pred             -CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc--ChhHhhh-ccccccccCCchhHHHHhhhccccc
Confidence             367777777777777777666777777777  777777777665  4444433 46677766655310           


Q ss_pred             -------------CCCchhhHhhhcCC--CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCC
Q psy11648        252 -------------SNEFPYYILNKNLN--TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR  316 (584)
Q Consensus       252 -------------~~~l~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~  316 (584)
                                   ...++...+ ..+.  +|++|++++|.++++++..+..+++|++|++++|.++.+|..+..   +++
T Consensus       227 l~~l~~~~~~~~~~~~i~~~~~-~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~---l~~  302 (606)
T 3t6q_A          227 IQSLWLGTFEDMDDEDISPAVF-EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG---LST  302 (606)
T ss_dssp             EEEEECCCCTTSCCCCCCGGGG-GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCS---CTT
T ss_pred             hhheechhhccccccccChhHh-chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcc---ccc
Confidence                         012222222 2332  799999999999999988899999999999999999988876544   899


Q ss_pred             ccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcC-hhhhccCcCCCEEeccCCCCCccC--CccCCCCCCCcEEe
Q psy11648        317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIK-TTSFKNLNNMLNIVLSFNQIKYIY--PNAFVNLPNLVKLD  393 (584)
Q Consensus       317 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~  393 (584)
                      |++|++++|.++...+..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..  +..+..+++|++|+
T Consensus       303 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  382 (606)
T 3t6q_A          303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN  382 (606)
T ss_dssp             CCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEE
T ss_pred             CCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEE
Confidence            999999999999988888999999999999999887543 445889999999999999998775  66788999999999


Q ss_pred             cCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccC
Q psy11648        394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDF  473 (584)
Q Consensus       394 l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~  473 (584)
                      +++|.+.+..+..+..   ++.++.+++++|.+........+..+++|++|++++|.+...++..+..+ ++|++|++++
T Consensus       383 l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~  458 (606)
T 3t6q_A          383 LSYNEPLSLKTEAFKE---CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQG  458 (606)
T ss_dssp             CCSCSCEEECTTTTTT---CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TTCCEEECTT
T ss_pred             CCCCcCCcCCHHHhcC---CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC-CCCCEEECCC
Confidence            9999988876665554   46899999999999887666656678999999999999998877888888 9999999999


Q ss_pred             Cccccc---CccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648        474 NEIKHL---DATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       474 n~l~~~---~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      |++.+.   .+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..++.+..++.| +|++++|++++
T Consensus       459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence            998763   23568899999999999999999989999999999999999999999999999999999 99999999998


Q ss_pred             cCcc-ccCCCCcceEECCCCCCC
Q psy11648        551 LPRD-VFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       551 lp~~-l~~~~~L~~l~l~~n~l~  572 (584)
                      +|.. +..+++|+.|++++|+++
T Consensus       538 ~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          538 ILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             CCGGGHHHHHTSSEEECTTCCEE
T ss_pred             cCHhhcccCCCCCEEeCCCCCcc
Confidence            7654 566799999999999997

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-49  Score=424.83  Aligned_cols=498  Identities=18%  Similarity=0.195  Sum_probs=353.1

Q ss_pred             cccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCC
Q psy11648         30 TTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHN  106 (584)
Q Consensus        30 ~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~  106 (584)
                      +++++++.++.+|.   +++++|++++|.+.++.+..|.++ ++|+ +|++++|++..++...|....+|+  +|++++|
T Consensus        15 ~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~-~L~Ls~n~l~~i~~~~~~~l~~L~--~L~Ls~n   90 (606)
T 3vq2_A           15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNF-SELQ-WLDLSRCEIETIEDKAWHGLHHLS--NLILTGN   90 (606)
T ss_dssp             EEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTC-TTCC-EEECTTCCCCEECTTTTTTCTTCC--EEECTTC
T ss_pred             ceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCC-ccCc-EEeCCCCcccccCHHHhhchhhcC--EeECCCC
Confidence            44666666666655   566666666666666655566665 5666 666666666665555555555566  6666666


Q ss_pred             ceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCc-ccchhH
Q psy11648        107 KLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNED-QVSDRE  184 (584)
Q Consensus       107 ~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~-~~~~~~  184 (584)
                      .+++..+..|                   .++++|++|++++|.+++..+..+.. +++|++|+++ +..... .|..+.
T Consensus        91 ~l~~~~p~~~-------------------~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~lp~~~~  150 (606)
T 3vq2_A           91 PIQSFSPGSF-------------------SGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFS  150 (606)
T ss_dssp             CCCCCCTTSS-------------------TTCTTCCEEECTTSCCCCSSSSCCTT-CTTCCEEECCSSCCCCCCCCGGGG
T ss_pred             cccccChhhc-------------------CCcccCCEEEccCCccccccccccCC-CCCCCEEeCCCCcccceechHhHh
Confidence            6554433333                   23334444444444444333322221 2234444444 222221 133443


Q ss_pred             hhccCCcEEEcCCCcccccchhhhcCCCCCC----EEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHh
Q psy11648        185 KLLSNLETLLLRCNKITDLNGNLFRHLYNLQ----ELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYIL  260 (584)
Q Consensus       185 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~  260 (584)
                       .+++|++|++++|.++...+..++.+++|+    ++++++|.+...  .+..+... +|+.|++++|.+..+.++..+ 
T Consensus       151 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~--~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~-  225 (606)
T 3vq2_A          151 -NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI--QDQAFQGI-KLHELTLRGNFNSSNIMKTCL-  225 (606)
T ss_dssp             -TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEE--CTTTTTTC-EEEEEEEESCCSCHHHHHHHH-
T ss_pred             -hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCccee--CcccccCc-eeeeeeccCCccchhHHHHHh-
Confidence             566666666666666665555555444433    666666666655  34444333 666666666655411223222 


Q ss_pred             hhcCCCCCEEEc---------------------------------cCccccccccccccCCCCCcEEEcccCCCcccccc
Q psy11648        261 NKNLNTLEWLAM---------------------------------DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN  307 (584)
Q Consensus       261 ~~~~~~L~~L~l---------------------------------~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~  307 (584)
                       ..++.++.+++                                 ..+.+.+..+. +..+++|+.++++++.+..++  
T Consensus       226 -~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--  301 (606)
T 3vq2_A          226 -QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--  301 (606)
T ss_dssp             -HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--
T ss_pred             -ccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh--
Confidence             45555555444                                 44555555553 788899999999999998877  


Q ss_pred             cccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCcc--CCccCCC
Q psy11648        308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI--YPNAFVN  385 (584)
Q Consensus       308 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~  385 (584)
                      .+..  +++|+.|++++|.+..+ + .+ .++.|++|++++|...+..  .+..+++|+.|++++|.+++.  .+..+..
T Consensus       302 ~l~~--~~~L~~L~l~~n~l~~l-p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~  374 (606)
T 3vq2_A          302 DVPK--HFKWQSLSIIRCQLKQF-P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG  374 (606)
T ss_dssp             CCCT--TCCCSEEEEESCCCSSC-C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred             hccc--cccCCEEEcccccCccc-c-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence            3333  88999999999999555 4 35 8899999999999554432  566889999999999998876  3667788


Q ss_pred             CCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCC
Q psy11648        386 LPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADS  465 (584)
Q Consensus       386 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  465 (584)
                      +++|++|++++|.+.+.+ .   .+...+.++.+++++|.+....+...+..+++|++|++++|.+....+..+..+ ++
T Consensus       375 ~~~L~~L~L~~n~l~~~~-~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~  449 (606)
T 3vq2_A          375 TNSLRHLDLSFNGAIIMS-A---NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-TS  449 (606)
T ss_dssp             CSCCCEEECCSCSEEEEC-C---CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-TT
T ss_pred             CCcccEeECCCCccccch-h---hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC-CC
Confidence            999999999999987755 2   233567899999999999888765555678999999999999987766778888 99


Q ss_pred             CcEEEccCCcccc-cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcC
Q psy11648        466 LRKLYLDFNEIKH-LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS  544 (584)
Q Consensus       466 L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~  544 (584)
                      |++|++++|.+.+ ..+..+..+++|++|++++|.+++..+..|..+++|++|++++|+++++.|..+..+++|++|+++
T Consensus       450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  529 (606)
T 3vq2_A          450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS  529 (606)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence            9999999999987 467789999999999999999999989999999999999999999999999999999999999999


Q ss_pred             CCcCCccCccccCCC-CcceEECCCCCCC
Q psy11648        545 HNRLRSLPRDVFSNT-IIEKLDISYNQDK  572 (584)
Q Consensus       545 ~n~l~~lp~~l~~~~-~L~~l~l~~n~l~  572 (584)
                      +|+++.+|..+..++ +|+.|++++|++.
T Consensus       530 ~N~l~~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          530 FNRIETSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             TSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred             CCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence            999999999988886 6999999999998

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.5e-48  Score=416.40  Aligned_cols=504  Identities=20%  Similarity=0.257  Sum_probs=355.3

Q ss_pred             ccccCCCccceeccccccccchhhhccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeEE
Q psy11648          2 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLTL   75 (584)
Q Consensus         2 ~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L   75 (584)
                      +||+++|.|+++++.+    +..+++||+|++++|.++.++.      ++|++|++++|.+.+..+..+.++ ++|+ +|
T Consensus        37 ~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~-~L  110 (606)
T 3t6q_A           37 CLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP-KALK-HL  110 (606)
T ss_dssp             EEECTTCCCSEECTTT----STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC-TTCC-EE
T ss_pred             EEEccCCccCcCChhH----hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc-cccc-Ee
Confidence            4555555555555443    4455555555555555554422      555555555555555555555554 5555 55


Q ss_pred             EecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecccccccccc
Q psy11648         76 KITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLN  155 (584)
Q Consensus        76 ~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~  155 (584)
                      ++++|++..++...+....+|+  +|++++|.+.+....                   .+..+++|++|++++|.+++..
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~--~L~L~~n~l~~~~~~-------------------~~~~l~~L~~L~L~~n~l~~~~  169 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLE--SLYLGSNHISSIKLP-------------------KGFPTEKLKVLDFQNNAIHYLS  169 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCC--EEECCSSCCCCCCCC-------------------TTCCCTTCCEEECCSSCCCEEC
T ss_pred             eccccCcccCCcchhccCCccc--EEECCCCcccccCcc-------------------cccCCcccCEEEcccCcccccC
Confidence            5555555555434444444455  555555555443222                   2333667777777777776665


Q ss_pred             ccccchhhHHHH--HhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccce---eec
Q psy11648        156 GNLFRHLQKSIV--KAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQI---IEL  229 (584)
Q Consensus       156 ~~~~~~~~~~L~--~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~~~  229 (584)
                      +..+... ++|+  .|+++ +......+..+.  ...|+.|+++++..   .+..+..+.+++...+....+..   ...
T Consensus       170 ~~~~~~l-~~L~~l~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i  243 (606)
T 3t6q_A          170 KEDMSSL-QQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDI  243 (606)
T ss_dssp             HHHHHTT-TTCCSEEEECTTCCCCEECTTTTT--TCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred             hhhhhhh-cccceeEEecCCCccCccChhHhh--hccccccccCCchh---HHHHhhhccccchhheechhhcccccccc
Confidence            5444332 3455  45555 555555555553  47899999998862   23344455544433332221111   111


Q ss_pred             CCccccccc--cceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccc
Q psy11648        230 NSNVFDVFE--KLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNN  307 (584)
Q Consensus       230 ~~~~~~~l~--~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~  307 (584)
                      .+..+..+.  +|+.|++++|.+.  .++...+ ..+++|++|++++|.++.++. .+..+++|++|++++|.+..+++.
T Consensus       244 ~~~~~~~l~~~~L~~L~l~~n~l~--~~~~~~~-~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~  319 (606)
T 3t6q_A          244 SPAVFEGLCEMSVESINLQKHYFF--NISSNTF-HCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQI  319 (606)
T ss_dssp             CGGGGGGGGGSEEEEEECTTCCCS--SCCTTTT-TTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGG
T ss_pred             ChhHhchhhcCceeEEEeecCccC--ccCHHHh-ccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchh
Confidence            234444443  7889999998885  5655555 788899999999998887665 688889999999999988877665


Q ss_pred             cccccccCCccEEEcCCCcccc-cccccccCCCCCcEEEccCCcCCCcC--hhhhccCcCCCEEeccCCCCCccCCccCC
Q psy11648        308 LFHFNIHKRLKEIRLSNNYLEL-IESDTFYNLKELNTITLSYNLLKSIK--TTSFKNLNNMLNIVLSFNQIKYIYPNAFV  384 (584)
Q Consensus       308 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  384 (584)
                      .+..  +++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..  +..+..+++|+.|++++|.+.+..+..+.
T Consensus       320 ~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  397 (606)
T 3t6q_A          320 SASN--FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK  397 (606)
T ss_dssp             CGGG--CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred             hhhc--cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence            5555  8899999999988774 44445788899999999999888765  56778889999999999998888788888


Q ss_pred             CCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCC--C-hhhHHH
Q psy11648        385 NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV--P-VNFLQT  461 (584)
Q Consensus       385 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~-~~~~~~  461 (584)
                      .+++|++|++++|.+.+..+..  .+...+.++.|++++|.+....+.. +..+++|++|++++|.++..  + ...+..
T Consensus       398 ~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  474 (606)
T 3t6q_A          398 ECPQLELLDLAFTRLKVKDAQS--PFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQHLNLQGNHFPKGNIQKTNSLQT  474 (606)
T ss_dssp             TCTTCSEEECTTCCEECCTTCC--TTTTCTTCCEEECTTCCCBTTCTTT-TTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred             CCccCCeEECCCCcCCCcccch--hhhCcccCCEEECCCCccCCcCHHH-HhCCCCCCEEECCCCCCCccccccchhhcc
Confidence            8999999999999887654322  1224568899999999887765443 33478999999999988752  2 245777


Q ss_pred             hhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEE
Q psy11648        462 FADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRIL  541 (584)
Q Consensus       462 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L  541 (584)
                      + ++|++|++++|++.+.++..|..+++|++|++++|.+++..+..+..+++| .|++++|++++++|..+..+++|++|
T Consensus       475 l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L  552 (606)
T 3t6q_A          475 L-GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI  552 (606)
T ss_dssp             C-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred             C-CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence            7 999999999999999988899999999999999999999999999999999 99999999999999999999999999


Q ss_pred             EcCCCcCC
Q psy11648        542 NISHNRLR  549 (584)
Q Consensus       542 ~L~~n~l~  549 (584)
                      ++++|.++
T Consensus       553 ~l~~N~~~  560 (606)
T 3t6q_A          553 NLRQNPLD  560 (606)
T ss_dssp             ECTTCCEE
T ss_pred             eCCCCCcc
Confidence            99999887

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.2e-48  Score=424.24  Aligned_cols=515  Identities=22%  Similarity=0.222  Sum_probs=337.7

Q ss_pred             ccccccccccccc--ccceeeeecCCceeecCCccccccccceeeEEEecCcc-cccccccccccccccceeeeecCCCc
Q psy11648         31 TILKGDQLQGIFN--SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQ-IEELPSGLFDKIENIEQMTLDLSHNK  107 (584)
Q Consensus        31 L~l~~~~l~~l~~--~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~-i~~l~~~~~~~~~~L~~~~L~ls~~~  107 (584)
                      .|+++++++.||.  +++++|++++|.+.++.+..|.++ ++|+ +|++++|. +..++...|..+.+|+  +|+|++|.
T Consensus         9 ~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l-~~L~-~LdLs~n~~~~~i~~~~f~~L~~L~--~L~Ls~N~   84 (844)
T 3j0a_A            9 AFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFL-EQLQ-LLELGSQYTPLTIDKEAFRNLPNLR--ILDLGSSK   84 (844)
T ss_dssp             EEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSC-CSCS-EEEECTTCCCCEECTTTTSSCTTCC--EEECTTCC
T ss_pred             EEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCccc-ccCe-EEeCCCCCCccccCHHHhcCCCCCC--EEECCCCc
Confidence            3455555555554  555555555555555555555554 4555 55555552 3344444444444455  55555555


Q ss_pred             eeeechhhhccchhccc----ccCcee-ccc--hhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCcc
Q psy11648        108 LSVLNMATLYSNVTKLQ----HLGTTI-LKD--REKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQ  179 (584)
Q Consensus       108 l~~~~~~~~~~~~~l~~----~n~l~~-l~~--~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~  179 (584)
                      +.+..+..|+.+..+..    .|.++. +|.  .+.++++|++|++++|.+.+..+......+++|++|+++ +.+....
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~  164 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC  164 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence            55444444433333211    233331 232  256677888888888877776543333344556666666 4445555


Q ss_pred             cchhHhhc--cCCcEEEcCCCcccccchhhhcCCCC------CCEEEcCCCccceeecCCcccccc---ccceEEeeccc
Q psy11648        180 VSDREKLL--SNLETLLLRCNKITDLNGNLFRHLYN------LQELSLSFNKLQIIELNSNVFDVF---EKLQLLEISFS  248 (584)
Q Consensus       180 ~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~~~l~~~~~~~~~~~~l---~~L~~L~l~~~  248 (584)
                      +..+. .+  ++|+.|++++|.+....+..+..+++      |++|++++|.+...  .+..+...   .+++.+.+..+
T Consensus       165 ~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          165 EHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD--ITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             SGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT--TTSGGGGTSCSCCBSEEECCSS
T ss_pred             HHHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchh--HHHHHHhhcCcccccceecccc
Confidence            55554 33  56666666666666544444444433      66666666655433  33333322   44555555532


Q ss_pred             ccCC-------CCchhhHhhhc--CCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccE
Q psy11648        249 LFNS-------NEFPYYILNKN--LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKE  319 (584)
Q Consensus       249 ~~~~-------~~l~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~  319 (584)
                      ....       .......+ ..  .++|++|++++|.+....+..+..+++|++|++++|.++.++...+..  +++|+.
T Consensus       242 ~~~~~~~~~~l~~~~~~~f-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~  318 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTF-AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG--LDNLQV  318 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTT-TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT--CSSCCE
T ss_pred             cccccccccccCCCChhhh-hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC--CCCCCE
Confidence            2110       01111112 22  367888888888888777777888888888888888888777666665  788888


Q ss_pred             EEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCC
Q psy11648        320 IRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL  399 (584)
Q Consensus       320 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  399 (584)
                      |++++|.++...+..+..+++|+.|++++|.+..+.+..+..+++|+.|++++|.++.+.     .+++|+.+++++|.+
T Consensus       319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l  393 (844)
T 3j0a_A          319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKL  393 (844)
T ss_dssp             EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCC
T ss_pred             EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCc
Confidence            888888888777777888888888888888888777777788888888888888877542     267888888888887


Q ss_pred             CCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChh-hHHHhhCCCcEEEccCCcccc
Q psy11648        400 KDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN-FLQTFADSLRKLYLDFNEIKH  478 (584)
Q Consensus       400 ~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~  478 (584)
                      +..+..       ...++.+++++|.++..+.......+++|+.|++++|.++.++.. .+..+ ++|+.|++++|.+..
T Consensus       394 ~~l~~~-------~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-~~L~~L~Ls~N~l~~  465 (844)
T 3j0a_A          394 VTLPKI-------NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN-PSLEQLFLGENMLQL  465 (844)
T ss_dssp             CCCCCC-------CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSC-TTCCBCEEESCCCSS
T ss_pred             cccccc-------ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccC-CccccccCCCCcccc
Confidence            755321       346688888888888776655555678888888888888755432 23344 788888888888763


Q ss_pred             -----cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy11648        479 -----LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR  553 (584)
Q Consensus       479 -----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~  553 (584)
                           ..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|+++++++..+.  ++|+.|++++|++++++.
T Consensus       466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~  543 (844)
T 3j0a_A          466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP  543 (844)
T ss_dssp             SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred             ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence                 3345677888888899998888888888888888999999998888888877765  788889999988887665


Q ss_pred             cccCCCCcceEECCCCCCC
Q psy11648        554 DVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       554 ~l~~~~~L~~l~l~~n~l~  572 (584)
                      ..+  ++|+.+++++|++.
T Consensus       544 ~~~--~~L~~l~l~~Np~~  560 (844)
T 3j0a_A          544 DVF--VSLSVLDITHNKFI  560 (844)
T ss_dssp             CCC--SSCCEEEEEEECCC
T ss_pred             hHh--CCcCEEEecCCCcc
Confidence            443  58888888888876

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6e-46  Score=396.22  Aligned_cols=486  Identities=20%  Similarity=0.201  Sum_probs=396.0

Q ss_pred             ceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccc
Q psy11648         46 LRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQH  125 (584)
Q Consensus        46 L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~  125 (584)
                      -+++++++++++.++....    ++++ +|++++|++..++...|....+|+  +|++++|.+++..+.           
T Consensus        13 ~~~~~c~~~~l~~ip~~~~----~~l~-~L~Ls~n~l~~~~~~~~~~l~~L~--~L~Ls~n~l~~i~~~-----------   74 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDIP----SSTK-NIDLSFNPLKILKSYSFSNFSELQ--WLDLSRCEIETIEDK-----------   74 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC----TTCC-EEECTTSCCCEECTTTTTTCTTCC--EEECTTCCCCEECTT-----------
T ss_pred             CCceEccCCCcccCCCCCC----CCcC-EEECCCCCcCEeChhhccCCccCc--EEeCCCCcccccCHH-----------
Confidence            4578999999999876443    6789 999999999999998888888899  999999998875544           


Q ss_pred             cCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccc-c
Q psy11648        126 LGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITD-L  203 (584)
Q Consensus       126 n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~  203 (584)
                              ++.++++|++|++++|.+++..+..|.. +++|++|+++ +......+..+. .+++|++|++++|.+.. .
T Consensus        75 --------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~  144 (606)
T 3vq2_A           75 --------AWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCK  144 (606)
T ss_dssp             --------TTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEEECTTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCC
T ss_pred             --------HhhchhhcCEeECCCCcccccChhhcCC-cccCCEEEccCCccccccccccC-CCCCCCEEeCCCCccccee
Confidence                    4566789999999999999987777654 4679999999 556666656665 78999999999999886 3


Q ss_pred             chhhhcCCCCCCEEEcCCCccceeecCCccccccccce----EEeecccccCCCCchhhHhhhcCCCCCEEEccCcccc-
Q psy11648        204 NGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQ----LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIK-  278 (584)
Q Consensus       204 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~-  278 (584)
                      .+..++++++|++|++++|.+.+.  .+..+..+.+|+    ++++++|.+.  .++...+  ...+|++|++++|.++ 
T Consensus       145 lp~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~~l~~L~l~~n~l~--~~~~~~~--~~~~L~~L~L~~n~~~~  218 (606)
T 3vq2_A          145 LPAYFSNLTNLVHVDLSYNYIQTI--TVNDLQFLRENPQVNLSLDMSLNPID--FIQDQAF--QGIKLHELTLRGNFNSS  218 (606)
T ss_dssp             CCGGGGTCTTCCEEECCSSCCCEE--CTTTTHHHHHCTTCCCEEECTTCCCC--EECTTTT--TTCEEEEEEEESCCSCH
T ss_pred             chHhHhhcCCCCEEEccCCcceec--ChhhhhhhhccccccceeeccCCCcc--eeCcccc--cCceeeeeeccCCccch
Confidence            467888999999999999988877  677777776654    8999999885  6666665  3448999999998876 


Q ss_pred             ccccccccCCCCCcEEEcc---------------------------------cCCCcccccccccccccCCccEEEcCCC
Q psy11648        279 NIRNYSLYNLTSLNYINLE---------------------------------YNKISKIHNNLFHFNIHKRLKEIRLSNN  325 (584)
Q Consensus       279 ~~~~~~l~~l~~L~~L~l~---------------------------------~~~l~~i~~~~~~~~~~~~L~~L~l~~~  325 (584)
                      ...+..+..++.|+.+++.                                 .+.+...... +..  +++|+.++++++
T Consensus       219 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~--l~~L~~L~l~~~  295 (606)
T 3vq2_A          219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHC--LANVSAMSLAGV  295 (606)
T ss_dssp             HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGG--GTTCSEEEEESC
T ss_pred             hHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-ccc--CCCCCEEEecCc
Confidence            3444456677777766653                                 2333322222 333  789999999999


Q ss_pred             cccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCC--
Q psy11648        326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN--  403 (584)
Q Consensus       326 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--  403 (584)
                      .+....  .+..+++|+.|++++|.+..+ + .+ .+++|+.|++++|......  .+..+++|++|++++|.+++..  
T Consensus       296 ~~~~l~--~l~~~~~L~~L~l~~n~l~~l-p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~  368 (606)
T 3vq2_A          296 SIKYLE--DVPKHFKWQSLSIIRCQLKQF-P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCC  368 (606)
T ss_dssp             CCCCCC--CCCTTCCCSEEEEESCCCSSC-C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEEC
T ss_pred             cchhhh--hccccccCCEEEcccccCccc-c-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcch
Confidence            998764  688899999999999999544 4 44 8999999999999655432  5678999999999999987653  


Q ss_pred             hhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCCh-hhHHHhhCCCcEEEccCCcccccCcc
Q psy11648        404 LNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV-NFLQTFADSLRKLYLDFNEIKHLDAT  482 (584)
Q Consensus       404 ~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~  482 (584)
                      +..+.   ..+.++.+++++|.+...+  ..+..+++|+.|++++|.+...++ ..+..+ ++|++|++++|.+.+..+.
T Consensus       369 ~~~~~---~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          369 SYSDL---GTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             CHHHH---CCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTC-TTCCEEECTTSCCEECCTT
T ss_pred             hhhhc---cCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCccChhhhhcc-ccCCEEECcCCCCCccchh
Confidence            33333   4568999999999998876  334558999999999999887665 577787 9999999999999998888


Q ss_pred             ccCCCcccCeeeccCccccc-ccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCcc-CccccCCCC
Q psy11648        483 AFGNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL-PRDVFSNTI  560 (584)
Q Consensus       483 ~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~  560 (584)
                      .+..+++|++|++++|.+.+ ..+..+..+++|++|++++|+++++++..+..+++|++|++++|+++.+ |..+..+++
T Consensus       443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  522 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS  522 (606)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred             hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence            89999999999999999998 4788899999999999999999999999999999999999999999976 778888899


Q ss_pred             cceEECCCCCCCCCCCCCCCCC
Q psy11648        561 IEKLDISYNQDKIRPGRESNPR  582 (584)
Q Consensus       561 L~~l~l~~n~l~~~p~~~~~~~  582 (584)
                      |+.|++++|+++.+|.. |...
T Consensus       523 L~~L~l~~N~l~~~p~~-~~~l  543 (606)
T 3vq2_A          523 LSTLDCSFNRIETSKGI-LQHF  543 (606)
T ss_dssp             CCEEECTTSCCCCEESC-GGGS
T ss_pred             CCEEECCCCcCcccCHh-Hhhh
Confidence            99999999999999987 4433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-45  Score=404.89  Aligned_cols=507  Identities=22%  Similarity=0.222  Sum_probs=355.2

Q ss_pred             eeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCCce-eeechhhhccchhccc-
Q psy11648         47 RELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKL-SVLNMATLYSNVTKLQ-  124 (584)
Q Consensus        47 ~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l-~~~~~~~~~~~~~l~~-  124 (584)
                      +..++++++++.++.  +   .++++ +|||++|.+..++...|....+|+  +||+++|.. ..+.+.+|+.+..+.. 
T Consensus         7 ~~~dcs~~~L~~vP~--l---p~~l~-~LdLs~N~i~~i~~~~~~~l~~L~--~LdLs~n~~~~~i~~~~f~~L~~L~~L   78 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--V---LNTTE-RLLLSFNYIRTVTASSFPFLEQLQ--LLELGSQYTPLTIDKEAFRNLPNLRIL   78 (844)
T ss_dssp             EEEEESCCCSSCCCS--S---CTTCC-EEEEESCCCCEECSSSCSSCCSCS--EEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred             eEEEccCCCCCCCCC--C---CCCcC-EEECCCCcCCccChhHCcccccCe--EEeCCCCCCccccCHHHhcCCCCCCEE
Confidence            467899999999876  2   26799 999999999988888888888899  999999954 4444555665554322 


Q ss_pred             ---ccCceec-cchhhcCCccceeecccccccccccc-ccchhhHHHHHhhcC-CCCCCccc-chhHhhccCCcEEEcCC
Q psy11648        125 ---HLGTTIL-KDREKLLSNLETLLLRCNKITDLNGN-LFRHLQKSIVKAKKN-NNNNEDQV-SDREKLLSNLETLLLRC  197 (584)
Q Consensus       125 ---~n~l~~l-~~~l~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~L~l~-~~~~~~~~-~~~~~~~~~L~~L~l~~  197 (584)
                         +|.++.+ |.++.++++|++|++++|.+.+..+. .+...+++|++|+++ +......+ ..+. .+++|+.|++++
T Consensus        79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~L~~L~~L~Ls~  157 (844)
T 3j0a_A           79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG-KLNSLKSIDFSS  157 (844)
T ss_dssp             ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG-TCSSCCEEEEES
T ss_pred             ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh-hCCCCCEEECCC
Confidence               4555543 45566666666666666665543221 111223345555555 33333322 2232 445555555555


Q ss_pred             CcccccchhhhcCC--CCCCEEEcCCCccceeecCCcccccccc------ceEEeecccccCCCCchhhHhh-hcCCCCC
Q psy11648        198 NKITDLNGNLFRHL--YNLQELSLSFNKLQIIELNSNVFDVFEK------LQLLEISFSLFNSNEFPYYILN-KNLNTLE  268 (584)
Q Consensus       198 ~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~l~~~~~~-~~~~~L~  268 (584)
                      |.+....+..+..+  ++|+.|++++|.+.+.  .+..+..+++      |+.|++++|.+. +..+..+.. ...++++
T Consensus       158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~~l~~~~l~  234 (844)
T 3j0a_A          158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSR--VSVDWGKCMNPFRNMVLEILDVSGNGWT-VDITGNFSNAISKSQAF  234 (844)
T ss_dssp             SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC--CCCCCCSSSCTTTTCCBSEEBCSSCCSS-TTTTSGGGGTSCSCCBS
T ss_pred             CcCCeeCHHHcccccCCccceEECCCCccccc--cccchhhcCCccccCceeEEecCCCcCc-hhHHHHHHhhcCccccc
Confidence            54444444444433  4455555555444432  2222332222      555555555443 222222210 0123344


Q ss_pred             EEEccCcc---------ccccccccccCC--CCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccC
Q psy11648        269 WLAMDNNN---------IKNIRNYSLYNL--TSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYN  337 (584)
Q Consensus       269 ~L~l~~~~---------l~~~~~~~l~~l--~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  337 (584)
                      .+.++.+.         +.......+..+  ++|++|++++|.+..++...+..  +++|+.|++++|.++...+..+..
T Consensus       235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~  312 (844)
T 3j0a_A          235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET--LKDLKVLNLAYNKINKIADEAFYG  312 (844)
T ss_dssp             EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS--CCCCCEEEEESCCCCEECTTTTTT
T ss_pred             ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc--CCCCCEEECCCCcCCCCChHHhcC
Confidence            44443211         111122223332  67999999999888877776666  889999999999998888888888


Q ss_pred             CCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCc
Q psy11648        338 LKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM  417 (584)
Q Consensus       338 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~  417 (584)
                      +++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++++..        .+.++
T Consensus       313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--------~~~L~  384 (844)
T 3j0a_A          313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--------IPSIP  384 (844)
T ss_dssp             CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--------CCSCS
T ss_pred             CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--------CCCcc
Confidence            9999999999999888878888889999999999999988877788889999999999998876432        45778


Q ss_pred             eEECCCCccccccccccccccCcccEEEccCCCCCCCChhh-HHHhhCCCcEEEccCCcccccCcc-ccCCCcccCeeec
Q psy11648        418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNF-LQTFADSLRKLYLDFNEIKHLDAT-AFGNLDVLELLSL  495 (584)
Q Consensus       418 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l  495 (584)
                      .+++++|+++.++..     ..+++.+++++|.++.++... +..+ ++|++|++++|++.+.++. .+..+++|++|++
T Consensus       385 ~L~l~~N~l~~l~~~-----~~~l~~L~ls~N~l~~l~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L  458 (844)
T 3j0a_A          385 DIFLSGNKLVTLPKI-----NLTANLIHLSENRLENLDILYFLLRV-PHLQILILNQNRFSSCSGDQTPSENPSLEQLFL  458 (844)
T ss_dssp             EEEEESCCCCCCCCC-----CTTCCEEECCSCCCCSSTTHHHHTTC-TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred             hhccCCCCccccccc-----ccccceeecccCccccCchhhhhhcC-CccceeeCCCCcccccccccccccCCccccccC
Confidence            999999988866543     467899999999998876433 3356 9999999999999866443 4567899999999


Q ss_pred             cCcccc-----cccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCC
Q psy11648        496 EHNNIA-----VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQ  570 (584)
Q Consensus       496 ~~n~~~-----~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~  570 (584)
                      ++|.+.     +..+..|..+++|+.|++++|+++++++..|..+++|++|+|++|+++.+|...+. ++|+.|++++|+
T Consensus       459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~  537 (844)
T 3j0a_A          459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQ  537 (844)
T ss_dssp             ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEEC
T ss_pred             CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCc
Confidence            999987     34456788999999999999999999999999999999999999999999887776 999999999999


Q ss_pred             CCCCCCCCCCCC
Q psy11648        571 DKIRPGRESNPR  582 (584)
Q Consensus       571 l~~~p~~~~~~~  582 (584)
                      ++.+++..|..+
T Consensus       538 l~~~~~~~~~~L  549 (844)
T 3j0a_A          538 LLAPNPDVFVSL  549 (844)
T ss_dssp             CCCCCSCCCSSC
T ss_pred             CCCCChhHhCCc
Confidence            998888777543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-45  Score=388.93  Aligned_cols=504  Identities=20%  Similarity=0.237  Sum_probs=370.4

Q ss_pred             ccccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCC
Q psy11648         29 GTTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSH  105 (584)
Q Consensus        29 r~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~  105 (584)
                      +.+++++.+++.+|.   +++++|++++|.+.++.+..|.++ ++|+ +|++++|++..++...|..+.+|+  +|++++
T Consensus        10 ~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~-~L~Ls~n~i~~i~~~~~~~l~~L~--~L~L~~   85 (570)
T 2z63_A           10 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF-PELQ-VLDLSRCEIQTIEDGAYQSLSHLS--TLILTG   85 (570)
T ss_dssp             TEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTC-SSCC-EEECTTCCCCEECTTTTTTCTTCC--EEECTT
T ss_pred             cEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCC-CCce-EEECCCCcCCccCcccccCchhCC--EEeCcC
Confidence            445777777777776   677888888888777777777776 7788 888888877777777777766688  888888


Q ss_pred             CceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCc-ccchh
Q psy11648        106 NKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNED-QVSDR  183 (584)
Q Consensus       106 ~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~-~~~~~  183 (584)
                      |.+++..+..|                   .++++|++|++++|.++.++...+. .+++|++|+++ +....+ .|..+
T Consensus        86 n~l~~~~~~~~-------------------~~l~~L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~  145 (570)
T 2z63_A           86 NPIQSLALGAF-------------------SGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYF  145 (570)
T ss_dssp             CCCCEECTTTT-------------------TTCTTCCEEECTTSCCCCSTTCSCT-TCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             CcCCccCHhhh-------------------cCccccccccccccccccCCCcccc-ccccccEEecCCCccceecChhhh
Confidence            77766544433                   3445566666665555554432222 22344444444 222221 24455


Q ss_pred             HhhccCCcEEEcCCCcccccchhhhcCCCCC----CEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhH
Q psy11648        184 EKLLSNLETLLLRCNKITDLNGNLFRHLYNL----QELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI  259 (584)
Q Consensus       184 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~  259 (584)
                      . .+++|++|++++|.+....+..++.+++|    +++++++|.+...  .+..+... +|+.|++++|......++..+
T Consensus       146 ~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~--~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~  221 (570)
T 2z63_A          146 S-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFKEI-RLHKLTLRNNFDSLNVMKTCI  221 (570)
T ss_dssp             G-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE--CTTTTTTC-EEEEEEEESCCSCTTHHHHHH
T ss_pred             c-ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec--CHHHhccC-cceeEecccccccccchhhhh
Confidence            4 67888888888888887777777777777    7888888887776  56666655 788888887754423344443


Q ss_pred             hhhcCCCCCEEEccCccc------cccccccccCCCC--CcEEEcccC-CCcccccccccccccCCccEEEcCCCccccc
Q psy11648        260 LNKNLNTLEWLAMDNNNI------KNIRNYSLYNLTS--LNYINLEYN-KISKIHNNLFHFNIHKRLKEIRLSNNYLELI  330 (584)
Q Consensus       260 ~~~~~~~L~~L~l~~~~l------~~~~~~~l~~l~~--L~~L~l~~~-~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~  330 (584)
                        ..++.++...+....+      ..+....+..++.  ++.++++++ .+.......+..  +++|+.|++++|.++..
T Consensus       222 --~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~~l  297 (570)
T 2z63_A          222 --QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC--LTNVSSFSLVSVTIERV  297 (570)
T ss_dssp             --HTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG--GTTCSEEEEESCEECSC
T ss_pred             --cCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC--cCcccEEEecCccchhh
Confidence              5777777665543221      2222223333332  456666666 444444444544  89999999999998865


Q ss_pred             ccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCC--hhhhc
Q psy11648        331 ESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN--LNVFS  408 (584)
Q Consensus       331 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~  408 (584)
                       +..+..+ .|++|++++|.+..+..   ..+++|+.+++++|.+....+.  ..+++|++|++++|.+++..  +..+.
T Consensus       298 -~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~  370 (570)
T 2z63_A          298 -KDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF  370 (570)
T ss_dssp             -CBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred             -hhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc
Confidence             4556777 99999999999885533   4678999999999988776443  67899999999999987653  23332


Q ss_pred             ccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCCh-hhHHHhhCCCcEEEccCCcccccCccccCCC
Q psy11648        409 NITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV-NFLQTFADSLRKLYLDFNEIKHLDATAFGNL  487 (584)
Q Consensus       409 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l  487 (584)
                         ..+.++.+++++|.+...+..  +..+++|++|++++|.+...++ ..+..+ ++|++|++++|.+.+..+..+.++
T Consensus       371 ---~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l  444 (570)
T 2z63_A          371 ---GTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGL  444 (570)
T ss_dssp             ---TCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTC
T ss_pred             ---ccCccCEEECCCCcccccccc--ccccCCCCEEEccCCccccccchhhhhcC-CCCCEEeCcCCcccccchhhhhcC
Confidence               456899999999999887765  4568999999999999876643 567777 999999999999998888889999


Q ss_pred             cccCeeeccCcccc-cccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEE
Q psy11648        488 DVLELLSLEHNNIA-VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLD  565 (584)
Q Consensus       488 ~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~  565 (584)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|+++++.|..|..+++|++|++++|+++.+|.. +..+++|+.|+
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence            99999999999997 56788999999999999999999999999999999999999999999987754 66789999999


Q ss_pred             CCCCCCC-CCCCC
Q psy11648        566 ISYNQDK-IRPGR  577 (584)
Q Consensus       566 l~~n~l~-~~p~~  577 (584)
                      +++|+++ ..|..
T Consensus       525 l~~N~~~~~~~~~  537 (570)
T 2z63_A          525 LHTNPWDCSCPRI  537 (570)
T ss_dssp             CCSSCBCCCTTTT
T ss_pred             ecCCcccCCCcch
Confidence            9999998 55543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.1e-44  Score=377.53  Aligned_cols=481  Identities=20%  Similarity=0.225  Sum_probs=378.2

Q ss_pred             cccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCC
Q psy11648         30 TTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHN  106 (584)
Q Consensus        30 ~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~  106 (584)
                      +.|++++.++.+|.   +++++|++++|.+.++.+..+.++ ++|+ +|++++|++..++...|....+|+  +|++++|
T Consensus         9 ~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~-~L~Ls~n~i~~~~~~~~~~l~~L~--~L~Ls~n   84 (549)
T 2z81_A            9 VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC-ANLQ-VLILKSSRINTIEGDAFYSLGSLE--HLDLSDN   84 (549)
T ss_dssp             EEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSC-TTCC-EEECTTSCCCEECTTTTTTCTTCC--EEECTTS
T ss_pred             eEECCCCccccccccCCCCccEEECcCCccCccChhhhhcC-Cccc-EEECCCCCcCccChhhccccccCC--EEECCCC
Confidence            35788889999987   899999999999999988889988 8999 999999999998887777777799  9999999


Q ss_pred             ceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhh
Q psy11648        107 KLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKL  186 (584)
Q Consensus       107 ~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  186 (584)
                      .+++..+.                   .+.++++|++|++++|.+++...                       +..+. .
T Consensus        85 ~l~~~~~~-------------------~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~-~  121 (549)
T 2z81_A           85 HLSSLSSS-------------------WFGPLSSLKYLNLMGNPYQTLGV-----------------------TSLFP-N  121 (549)
T ss_dssp             CCCSCCHH-------------------HHTTCTTCCEEECTTCCCSSSCS-----------------------SCSCT-T
T ss_pred             ccCccCHH-------------------HhccCCCCcEEECCCCcccccch-----------------------hhhhh-c
Confidence            98865543                   35566899999999998886532                       12233 7


Q ss_pred             ccCCcEEEcCCCc-ccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648        187 LSNLETLLLRCNK-ITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN  265 (584)
Q Consensus       187 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~  265 (584)
                      +++|++|++++|. +....+..+.++++|++|++++|.+.+.  .+..+..+++|++|+++++...  .++..++ ..++
T Consensus       122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~-~~l~  196 (549)
T 2z81_A          122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY--QSQSLKSIRDIHHLTLHLSESA--FLLEIFA-DILS  196 (549)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTTTTCSEEEEEEEECSBST--THHHHHH-HSTT
T ss_pred             cCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc--ChhhhhccccCceEecccCccc--ccchhhH-hhcc
Confidence            8999999999998 5566667889999999999999999887  7888999999999999999874  6777766 7799


Q ss_pred             CCCEEEccCccccccc---cccccCCCCCcEEEcccCCCccccc----ccccccccCCccEEEcCCCccccccc------
Q psy11648        266 TLEWLAMDNNNIKNIR---NYSLYNLTSLNYINLEYNKISKIHN----NLFHFNIHKRLKEIRLSNNYLELIES------  332 (584)
Q Consensus       266 ~L~~L~l~~~~l~~~~---~~~l~~l~~L~~L~l~~~~l~~i~~----~~~~~~~~~~L~~L~l~~~~~~~~~~------  332 (584)
                      +|++|++++|.+++..   ......+++|+.|+++++.+.....    .....  +++|+.+++++|.+.+...      
T Consensus       197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~--~~~L~~l~l~~~~~~~~~~~~~~~~  274 (549)
T 2z81_A          197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY--ILELSEVEFDDCTLNGLGDFNPSES  274 (549)
T ss_dssp             TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG--CTTCCEEEEESCEEECCSCCCCCTT
T ss_pred             cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh--hccccccccccccccccccccccch
Confidence            9999999999988752   2234557889999999997763211    11122  7889999999998776421      


Q ss_pred             ccccCCCCCcEEEccCCcCCCcC-----hhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhh
Q psy11648        333 DTFYNLKELNTITLSYNLLKSIK-----TTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVF  407 (584)
Q Consensus       333 ~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  407 (584)
                      ..+..+.+++.+.+.++.+....     +..+...++|+.+++++|.+..+....+..+++|++|++++|.+.+..+...
T Consensus       275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  354 (549)
T 2z81_A          275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS  354 (549)
T ss_dssp             TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred             hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccch
Confidence            23466788899999888765421     1223445789999999999886643333578999999999999876543322


Q ss_pred             cccccCCCCceEECCCCccccccc-cccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCC
Q psy11648        408 SNITSKQTPMNLNLSNNYITNLYE-NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGN  486 (584)
Q Consensus       408 ~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  486 (584)
                      ......+.++.|++++|+++.++. ...+..+++|++|++++|.++.+|. .+..+ ++|++|++++|++..++...   
T Consensus       355 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~~-~~L~~L~Ls~N~l~~l~~~~---  429 (549)
T 2z81_A          355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWP-EKMRFLNLSSTGIRVVKTCI---  429 (549)
T ss_dssp             TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-CCCCC-TTCCEEECTTSCCSCCCTTS---
T ss_pred             hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-hhccc-ccccEEECCCCCcccccchh---
Confidence            233456789999999999987653 2334558899999999999998874 45555 89999999999988665432   


Q ss_pred             CcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEE
Q psy11648        487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLD  565 (584)
Q Consensus       487 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~  565 (584)
                      .++|++|++++|.+++..    ..+++|++|++++|+++.++.  ...+++|++|++++|+++.+|.. +..+++|+.|+
T Consensus       430 ~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  503 (549)
T 2z81_A          430 PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW  503 (549)
T ss_dssp             CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred             cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEE
Confidence            268999999999998753    578999999999999997765  35689999999999999987664 67789999999


Q ss_pred             CCCCCCC-CCC
Q psy11648        566 ISYNQDK-IRP  575 (584)
Q Consensus       566 l~~n~l~-~~p  575 (584)
                      +++|+++ ..|
T Consensus       504 l~~N~~~~~~~  514 (549)
T 2z81_A          504 LHTNPWDCSCP  514 (549)
T ss_dssp             CCSSCBCCCHH
T ss_pred             ecCCCccCCCc
Confidence            9999987 443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-43  Score=376.48  Aligned_cols=478  Identities=18%  Similarity=0.211  Sum_probs=312.7

Q ss_pred             ccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceee
Q psy11648         27 HLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMT  100 (584)
Q Consensus        27 ~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~  100 (584)
                      ++++|++++|++++++.      ++|++|++++|++.++.+..|.++ ++|+ +|++++|++..++...|..+.+|+  +
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~-~L~L~~n~l~~~~~~~~~~l~~L~--~  104 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLS-TLILTGNPIQSLALGAFSGLSSLQ--K  104 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTC-TTCC-EEECTTCCCCEECTTTTTTCTTCC--E
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCc-hhCC-EEeCcCCcCCccCHhhhcCccccc--c
Confidence            45666777776666543      667777777777766666666665 6677 777777776666666666666677  7


Q ss_pred             eecCCCceeeechhhhccchhccc----ccCcee--ccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCC
Q psy11648        101 LDLSHNKLSVLNMATLYSNVTKLQ----HLGTTI--LKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNN  174 (584)
Q Consensus       101 L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~~--l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~  174 (584)
                      |++++|.+++.....++.+..+..    .|.++.  +|..+.++++|++|++++|.+++..+                  
T Consensus       105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~------------------  166 (570)
T 2z63_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC------------------  166 (570)
T ss_dssp             EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG------------------
T ss_pred             ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH------------------
Confidence            777777666544433333332211    333332  35556666666666666666665533                  


Q ss_pred             CCCcccchhHhhccCC----cEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeeccccc
Q psy11648        175 NNEDQVSDREKLLSNL----ETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLF  250 (584)
Q Consensus       175 ~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~  250 (584)
                            ..+. .+++|    +.|++++|.+....+..+... +|++|++++|.... ...+..+..++.++...+....+
T Consensus       167 ------~~~~-~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~-~~~~~~~~~l~~l~~~~l~~~~~  237 (570)
T 2z63_A          167 ------TDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL-NVMKTCIQGLAGLEVHRLVLGEF  237 (570)
T ss_dssp             ------GGGH-HHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCT-THHHHHHHTTTTCEEEEEEEEEC
T ss_pred             ------HHcc-chhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccc-cchhhhhcCccccceeeeccccc
Confidence                  3333 45566    677888887777766666654 67777777663211 11233444555555444432211


Q ss_pred             CC----CCchhhHhhhcCC--CCCEEEccCc-cccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcC
Q psy11648        251 NS----NEFPYYILNKNLN--TLEWLAMDNN-NIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLS  323 (584)
Q Consensus       251 ~~----~~l~~~~~~~~~~--~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~  323 (584)
                      ..    ..++...+ ..++  .++.++++++ .+.+..+..+..+++|++|++++|.+..++..+..   + +|+.|+++
T Consensus       238 ~~~~~l~~~~~~~~-~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~---~-~L~~L~l~  312 (570)
T 2z63_A          238 RNEGNLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN---F-GWQHLELV  312 (570)
T ss_dssp             CCCSSCEECCTTTT-GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSC---C-CCSEEEEE
T ss_pred             cCchhhhhcchhhh-ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhcc---C-CccEEeec
Confidence            10    11121211 2222  2445555555 44444445566666677777776666665554333   4 66677777


Q ss_pred             CCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccC--CccCCCCCCCcEEecCCCCCCC
Q psy11648        324 NNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIY--PNAFVNLPNLVKLDLQDNKLKD  401 (584)
Q Consensus       324 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~  401 (584)
                      +|.+.....   ..++.|+.+++++|.+.+..+.  ..+++|+.|++++|.+....  +..+..+++|++|++++|.+.+
T Consensus       313 ~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~  387 (570)
T 2z63_A          313 NCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT  387 (570)
T ss_dssp             SCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE
T ss_pred             cCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc
Confidence            666664332   3456667777777666554332  45667777777777666543  3455667777777777776665


Q ss_pred             CChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCccc-ccC
Q psy11648        402 FNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK-HLD  480 (584)
Q Consensus       402 ~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~  480 (584)
                      .+..    ...++.++.+++++|.+........+..+++|++|++++|.+...++..+..+ ++|++|++++|.+. +..
T Consensus       388 ~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~  462 (570)
T 2z63_A          388 MSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFL  462 (570)
T ss_dssp             EEEE----EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEE
T ss_pred             cccc----ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC-CcCcEEECcCCcCccccc
Confidence            4432    22445677777777777666554445568899999999999887776788888 99999999999987 455


Q ss_pred             ccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648        481 ATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       481 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      +..+..+++|++|++++|.+++..|..|..+++|++|++++|+++++++..|..+++|++|++++|.++.
T Consensus       463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            6788999999999999999999989999999999999999999999999999999999999999999884

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.3e-43  Score=367.86  Aligned_cols=449  Identities=18%  Similarity=0.203  Sum_probs=270.9

Q ss_pred             CccccCCCccceeccccccccchhhhccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeE
Q psy11648          1 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLT   74 (584)
Q Consensus         1 ~~l~ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~   74 (584)
                      ++||+++|.+++++..     +.  ++|++|++++|.+++++.      ++|++|++++|++.++.++.|.++ ++|+ +
T Consensus         3 ~~l~ls~n~l~~ip~~-----~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~-~   73 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKD-----LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELE-Y   73 (520)
T ss_dssp             CEEECTTSCCSSCCCS-----CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCC-E
T ss_pred             ceEecCCCCccccccc-----cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc-cCCC-E
Confidence            3567777777765543     22  566666777777776553      677777777777777666667666 6677 7


Q ss_pred             EEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccc
Q psy11648         75 LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDL  154 (584)
Q Consensus        75 L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~  154 (584)
                      |++++|+++.+|..   ...+|+  +|++++|.+++..                  +|..++++++|++|++++|.+++.
T Consensus        74 L~Ls~N~l~~lp~~---~l~~L~--~L~L~~N~l~~~~------------------~p~~~~~l~~L~~L~L~~n~l~~~  130 (520)
T 2z7x_B           74 LDLSHNKLVKISCH---PTVNLK--HLDLSFNAFDALP------------------ICKEFGNMSQLKFLGLSTTHLEKS  130 (520)
T ss_dssp             EECCSSCCCEEECC---CCCCCS--EEECCSSCCSSCC------------------CCGGGGGCTTCCEEEEEESSCCGG
T ss_pred             EecCCCceeecCcc---ccCCcc--EEeccCCcccccc------------------chhhhccCCcceEEEecCcccchh
Confidence            77777777776665   344477  7777777665421                  233455566777777777766542


Q ss_pred             cccccchhhHHHHHhhcCCCCCCcccchhHhhccCC--cEEEcCCCcc--cccchhhhcCCC-CCCEEEcCCCccceeec
Q psy11648        155 NGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNL--ETLLLRCNKI--TDLNGNLFRHLY-NLQELSLSFNKLQIIEL  229 (584)
Q Consensus       155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~  229 (584)
                                                 .+. .+++|  +.|++++|.+  ....+..+..+. ....+++++|.+.+. .
T Consensus       131 ---------------------------~~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~-~  181 (520)
T 2z7x_B          131 ---------------------------SVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF-I  181 (520)
T ss_dssp             ---------------------------GGG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCC-C
T ss_pred             ---------------------------hcc-ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhh-h
Confidence                                       111 34555  7777777766  444444444443 222445555554332 1


Q ss_pred             CCccccccccceEEeecccc-------cCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCc
Q psy11648        230 NSNVFDVFEKLQLLEISFSL-------FNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS  302 (584)
Q Consensus       230 ~~~~~~~l~~L~~L~l~~~~-------~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  302 (584)
                      ....+..+++|+.+++++|.       +. +.++ .+  ..+++|++|+++++.+++....                   
T Consensus       182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~-~l--~~l~~L~~L~l~~~~l~~~~~~-------------------  238 (520)
T 2z7x_B          182 LDVSVKTVANLELSNIKCVLEDNKCSYFL-SILA-KL--QTNPKLSNLTLNNIETTWNSFI-------------------  238 (520)
T ss_dssp             CCCCCTTCSEEEECCEEECCSTTTTHHHH-HHHH-GG--GGCTTCCEEEEEEEEEEHHHHH-------------------
T ss_pred             hhhhhhcccceeeccccccccccccceee-cchh-hh--ccccchhhccccccccCHHHHH-------------------
Confidence            23345555666666666653       21 1222 11  3444555555544443321100                   


Q ss_pred             ccccccccccccCCccEEEcCCCcccccccccc-----cCCCCCcEEEccCCcCCCcChhhhccC---cCCCEEeccCCC
Q psy11648        303 KIHNNLFHFNIHKRLKEIRLSNNYLELIESDTF-----YNLKELNTITLSYNLLKSIKTTSFKNL---NNMLNIVLSFNQ  374 (584)
Q Consensus       303 ~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~  374 (584)
                      .+....    ..++|++|++++|.+++..+..+     ..++.|+.+++++|.+ .+....+..+   .+|+.|++++|.
T Consensus       239 ~~~~~~----~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~  313 (520)
T 2z7x_B          239 RILQLV----WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTR  313 (520)
T ss_dssp             HHHHHH----HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHh----hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCc
Confidence            000000    02344555555554443333333     5566666677766666 2221233222   457777777776


Q ss_pred             CCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCC
Q psy11648        375 IKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEV  454 (584)
Q Consensus       375 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~  454 (584)
                      +....  ....+++|++|++++|.+++..+..+.                            .+++|++|++++|.++.+
T Consensus       314 l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~----------------------------~l~~L~~L~L~~N~l~~l  363 (520)
T 2z7x_B          314 MVHML--CPSKISPFLHLDFSNNLLTDTVFENCG----------------------------HLTELETLILQMNQLKEL  363 (520)
T ss_dssp             CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC----------------------------CCSSCCEEECCSSCCCBH
T ss_pred             ccccc--chhhCCcccEEEeECCccChhhhhhhc----------------------------cCCCCCEEEccCCccCcc
Confidence            65442  124667777777777776654333221                            246777777777777754


Q ss_pred             Ch--hhHHHhhCCCcEEEccCCcccc-cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCccc
Q psy11648        455 PV--NFLQTFADSLRKLYLDFNEIKH-LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ  531 (584)
Q Consensus       455 ~~--~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~  531 (584)
                      +.  ..+..+ ++|++|++++|++.+ ++...+..+++|++|++++|.+++..+..+.  ++|++|++++|+++.+++..
T Consensus       364 ~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~  440 (520)
T 2z7x_B          364 SKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQV  440 (520)
T ss_dssp             HHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGG
T ss_pred             ccchHHHhhC-CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhh
Confidence            42  445666 788888888888876 5555677788888888888888776665443  68888888888888665544


Q ss_pred             ccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEECCCCCCC
Q psy11648        532 FYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       532 ~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~l~~n~l~  572 (584)
                       ..+++|++|++++|+++.+|.. +..+++|+.|++++|+++
T Consensus       441 -~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          441 -VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             -GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             -hcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence             4788888888888888888876 666788888888888887

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.3e-42  Score=369.85  Aligned_cols=351  Identities=20%  Similarity=0.250  Sum_probs=237.0

Q ss_pred             hccCCcEEEcCCCccccc-----------------chhhhc--CCCCCCEEEcCCCccceeecCCccccccccceEEeec
Q psy11648        186 LLSNLETLLLRCNKITDL-----------------NGNLFR--HLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEIS  246 (584)
Q Consensus       186 ~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~  246 (584)
                      .+++|++|++++|.+++.                 .|..+.  ++++|++|++++|.+.+.  .|..+..+++|++|+++
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEECT
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEECc
Confidence            567777777777776663                 555666  888888888888877765  67778888888888888


Q ss_pred             ccc-cCCC-CchhhHhhhcC------CCCCEEEccCcccccccc-ccccCCCCCcEEEcccCCCc-ccccccccccccCC
Q psy11648        247 FSL-FNSN-EFPYYILNKNL------NTLEWLAMDNNNIKNIRN-YSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKR  316 (584)
Q Consensus       247 ~~~-~~~~-~l~~~~~~~~~------~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~-~i~~~~~~~~~~~~  316 (584)
                      +|. +. + .+|..+  ..+      ++|++|++++|.++.++. ..+..+++|++|++++|.++ .++  .+..  +++
T Consensus       282 ~n~~l~-~~~lp~~~--~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~--l~~  354 (636)
T 4eco_A          282 CNRGIS-GEQLKDDW--QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGS--EIK  354 (636)
T ss_dssp             TCTTSC-HHHHHHHH--HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEE--EEE
T ss_pred             CCCCCc-cccchHHH--HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCC--CCC
Confidence            887 65 4 577666  344      788888888888885443 16788888888888888887 666  3333  788


Q ss_pred             ccEEEcCCCcccccccccccCCCC-CcEEEccCCcCCCcChhhhccCc--CCCEEeccCCCCCccCCccCC-------CC
Q psy11648        317 LKEIRLSNNYLELIESDTFYNLKE-LNTITLSYNLLKSIKTTSFKNLN--NMLNIVLSFNQIKYIYPNAFV-------NL  386 (584)
Q Consensus       317 L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~  386 (584)
                      |+.|++++|.++.+ +..+..+++ |++|++++|.++.+ +..+....  +|+.|++++|.+.+..|..+.       .+
T Consensus       355 L~~L~L~~N~l~~l-p~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~  432 (636)
T 4eco_A          355 LASLNLAYNQITEI-PANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG  432 (636)
T ss_dssp             ESEEECCSSEEEEC-CTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred             CCEEECCCCccccc-cHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence            88888888888743 445777777 88888888877743 44444433  677888888877776666666       66


Q ss_pred             CCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhh---
Q psy11648        387 PNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFA---  463 (584)
Q Consensus       387 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~---  463 (584)
                      ++|++|++++|.++.++...+..                            +++|++|++++|.++.+|...+....   
T Consensus       433 ~~L~~L~Ls~N~l~~lp~~~~~~----------------------------l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~  484 (636)
T 4eco_A          433 INVSSINLSNNQISKFPKELFST----------------------------GSPLSSINLMGNMLTEIPKNSLKDENENF  484 (636)
T ss_dssp             CCEEEEECCSSCCCSCCTHHHHT----------------------------TCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred             CCCCEEECcCCccCcCCHHHHcc----------------------------CCCCCEEECCCCCCCCcCHHHhccccccc
Confidence            67777777777777655444332                            34455555555555555444333220   


Q ss_pred             ---CCCcEEEccCCcccccCcccc-CCCcccCeeeccCcccccccccccCCCCCccEEEC------CCCCCCCcCccccc
Q psy11648        464 ---DSLRKLYLDFNEIKHLDATAF-GNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL------SFNEISMLTGEQFY  533 (584)
Q Consensus       464 ---~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l------s~n~i~~~~~~~~~  533 (584)
                         ++|++|++++|++..++...+ ..+++|++|++++|.+++ +|..+..+++|++|++      ++|++.+..|..+.
T Consensus       485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~  563 (636)
T 4eco_A          485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT  563 (636)
T ss_dssp             TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred             cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence               256666666666664433222 256666666666666665 5556666666666666      45666666777777


Q ss_pred             CCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCC
Q psy11648        534 FSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRE  578 (584)
Q Consensus       534 ~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~  578 (584)
                      .+++|++|++++|+++.+|..+.  ++|+.|++++|+++.++...
T Consensus       564 ~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~~~~  606 (636)
T 4eco_A          564 LCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISIDLSY  606 (636)
T ss_dssp             GCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEECTT
T ss_pred             cCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCccccHHh
Confidence            77788888888887777777655  67888888888777665443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.9e-41  Score=353.44  Aligned_cols=465  Identities=20%  Similarity=0.230  Sum_probs=362.6

Q ss_pred             eeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccC
Q psy11648         48 ELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLG  127 (584)
Q Consensus        48 ~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~  127 (584)
                      +.++++++++.++....    ++|+ +|++++|++..++...|..+.+|+  +|++++|.+++..+.             
T Consensus         9 ~c~~~~~~l~~ip~~~~----~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~--~L~Ls~n~i~~~~~~-------------   68 (549)
T 2z81_A            9 VCDGRSRSFTSIPSGLT----AAMK-SLDLSFNKITYIGHGDLRACANLQ--VLILKSSRINTIEGD-------------   68 (549)
T ss_dssp             EEECTTSCCSSCCSCCC----TTCC-EEECCSSCCCEECSSTTSSCTTCC--EEECTTSCCCEECTT-------------
T ss_pred             eEECCCCccccccccCC----CCcc-EEECcCCccCccChhhhhcCCccc--EEECCCCCcCccChh-------------
Confidence            35777788887766443    5688 899999988888776677777799  999999888765443             


Q ss_pred             ceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCccccc-chh
Q psy11648        128 TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDL-NGN  206 (584)
Q Consensus       128 l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~  206 (584)
                            ++.++++|++|++++|.+++..+                        ..+. .+++|++|++++|.++.. .+.
T Consensus        69 ------~~~~l~~L~~L~Ls~n~l~~~~~------------------------~~~~-~l~~L~~L~Ls~n~l~~~~~~~  117 (549)
T 2z81_A           69 ------AFYSLGSLEHLDLSDNHLSSLSS------------------------SWFG-PLSSLKYLNLMGNPYQTLGVTS  117 (549)
T ss_dssp             ------TTTTCTTCCEEECTTSCCCSCCH------------------------HHHT-TCTTCCEEECTTCCCSSSCSSC
T ss_pred             ------hccccccCCEEECCCCccCccCH------------------------HHhc-cCCCCcEEECCCCcccccchhh
Confidence                  35556889999999998887633                        2343 789999999999999864 455


Q ss_pred             hhcCCCCCCEEEcCCCc-cceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccc
Q psy11648        207 LFRHLYNLQELSLSFNK-LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSL  285 (584)
Q Consensus       207 ~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l  285 (584)
                      .++++++|++|++++|. +...  .+..+..+++|++|++++|.+. +..|..+  ..+++|++|++++|.+...+...+
T Consensus       118 ~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~  192 (549)
T 2z81_A          118 LFPNLTNLQTLRIGNVETFSEI--RRIDFAGLTSLNELEIKALSLR-NYQSQSL--KSIRDIHHLTLHLSESAFLLEIFA  192 (549)
T ss_dssp             SCTTCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEEEEEETTCC-EECTTTT--TTCSEEEEEEEECSBSTTHHHHHH
T ss_pred             hhhccCCccEEECCCCcccccc--CHhhhhcccccCeeeccCCccc-ccChhhh--hccccCceEecccCcccccchhhH
Confidence            78899999999999997 4554  4568899999999999999986 4566665  789999999999998887766555


Q ss_pred             cCCCCCcEEEcccCCCcccc---cccccccccCCccEEEcCCCccccccc----ccccCCCCCcEEEccCCcCCCcC---
Q psy11648        286 YNLTSLNYINLEYNKISKIH---NNLFHFNIHKRLKEIRLSNNYLELIES----DTFYNLKELNTITLSYNLLKSIK---  355 (584)
Q Consensus       286 ~~l~~L~~L~l~~~~l~~i~---~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~---  355 (584)
                      ..+++|++|++++|.++.++   ......  +++|+.|++.+|.+++..+    ..+..++.++.+++++|.+.+..   
T Consensus       193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~  270 (549)
T 2z81_A          193 DILSSVRYLELRDTNLARFQFSPLPVDEV--SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN  270 (549)
T ss_dssp             HSTTTBSEEEEESCBCTTCCCCCCSSCCC--CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC
T ss_pred             hhcccccEEEccCCccccccccccchhhh--hhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc
Confidence            67899999999999988652   222233  7899999999998875332    23466789999999999776532   


Q ss_pred             ---hhhhccCcCCCEEeccCCCCCccC-----CccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccc
Q psy11648        356 ---TTSFKNLNNMLNIVLSFNQIKYIY-----PNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYIT  427 (584)
Q Consensus       356 ---~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~  427 (584)
                         ...+..+++++.+.+.++.+....     +..+...++|+.+++++|.+..++...+.   ..+.++.|++++|.+.
T Consensus       271 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~---~l~~L~~L~Ls~N~l~  347 (549)
T 2z81_A          271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ---HLKSLEFLDLSENLMV  347 (549)
T ss_dssp             CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHH---HCTTCCEEECCSSCCC
T ss_pred             ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHh---cCccccEEEccCCccc
Confidence               123456788999999888765431     11123357899999999999877765543   3468999999999998


Q ss_pred             cccc--cccccccCcccEEEccCCCCCCCCh--hhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccc
Q psy11648        428 NLYE--NDKKQAPIYIKSLDLSNNRIQEVPV--NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV  503 (584)
Q Consensus       428 ~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  503 (584)
                      +...  ......+++|++|++++|.++.++.  ..+..+ ++|++|++++|++..++ ..+..+++|++|++++|.+...
T Consensus       348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp-~~~~~~~~L~~L~Ls~N~l~~l  425 (549)
T 2z81_A          348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVV  425 (549)
T ss_dssp             HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCCCCC-SCCCCCTTCCEEECTTSCCSCC
T ss_pred             cccccchhhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCccCC-hhhcccccccEEECCCCCcccc
Confidence            6432  2223457999999999999998764  457777 99999999999998664 4678899999999999998754


Q ss_pred             cccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCCCC
Q psy11648        504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRP  583 (584)
Q Consensus       504 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~~~  583 (584)
                      .. .+  .++|++|++++|++++.+    ..+++|++|++++|+++.+|. ...+++|+.|++++|+++.+|+..|...+
T Consensus       426 ~~-~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  497 (549)
T 2z81_A          426 KT-CI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT  497 (549)
T ss_dssp             CT-TS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred             cc-hh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCc
Confidence            32 22  369999999999999864    468999999999999999997 45679999999999999998887776543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.4e-40  Score=355.66  Aligned_cols=500  Identities=18%  Similarity=0.195  Sum_probs=344.8

Q ss_pred             ccccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCC
Q psy11648         29 GTTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSH  105 (584)
Q Consensus        29 r~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~  105 (584)
                      +..++++.+++.||.   +++++|||++|.|+++.+.+|.++ ++|+ +|||++|+|..++.+.|....+|+  +|+|++
T Consensus        34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l-~~L~-~L~Ls~N~i~~i~~~~f~~L~~L~--~L~Ls~  109 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF-PELQ-VLDLSRCEIQTIEDGAYQSLSHLS--TLILTG  109 (635)
T ss_dssp             TEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTC-TTCC-EEECTTCCCCEECTTTTTTCTTCC--EEECTT
T ss_pred             CEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCC-CCCC-EEECCCCcCCCcChhHhcCCCCCC--EEEccC
Confidence            456888889999998   799999999999999999999998 8999 999999999999999999888899  999999


Q ss_pred             CceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcC-CCCCCcc-cchh
Q psy11648        106 NKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQ-VSDR  183 (584)
Q Consensus       106 ~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~-~~~~  183 (584)
                      |++++..+..|+                   ++++|++|++++|.++++++..|.. +++|++|+++ +.+.... +..+
T Consensus       110 N~l~~l~~~~f~-------------------~L~~L~~L~Ls~N~l~~l~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~  169 (635)
T 4g8a_A          110 NPIQSLALGAFS-------------------GLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYF  169 (635)
T ss_dssp             CCCCEECGGGGT-------------------TCTTCCEEECTTSCCCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGG
T ss_pred             CcCCCCCHHHhc-------------------CCCCCCEEECCCCcCCCCChhhhhc-CcccCeeccccCccccCCCchhh
Confidence            999876655444                   4456666666666666655444332 2345555555 3333322 2333


Q ss_pred             HhhccCCcEEEcCCCcccccchhhhcCCCC----CCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhH
Q psy11648        184 EKLLSNLETLLLRCNKITDLNGNLFRHLYN----LQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI  259 (584)
Q Consensus       184 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~  259 (584)
                      . .+++|++|++++|.++...+..+..+.+    ...++++.+.+...  .+..+ ....++.+++.++... ..+....
T Consensus       170 ~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i--~~~~~-~~~~~~~l~l~~n~~~-~~~~~~~  244 (635)
T 4g8a_A          170 S-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAF-KEIRLHKLTLRNNFDS-LNVMKTC  244 (635)
T ss_dssp             G-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE--CTTTT-TTCEEEEEEEESCCSS-HHHHHHH
T ss_pred             c-cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc--Ccccc-cchhhhhhhhhccccc-ccccchh
Confidence            3 6788888888888877766666654433    33677777777655  33333 2334566666666433 2233333


Q ss_pred             hhhcCCCCCEEEccCcccc------cccc---------------------------ccccCCCCCcEEEcccCCCccccc
Q psy11648        260 LNKNLNTLEWLAMDNNNIK------NIRN---------------------------YSLYNLTSLNYINLEYNKISKIHN  306 (584)
Q Consensus       260 ~~~~~~~L~~L~l~~~~l~------~~~~---------------------------~~l~~l~~L~~L~l~~~~l~~i~~  306 (584)
                      + ..+..++...+..+...      ....                           ..+....+++.+++.++.+..+..
T Consensus       245 ~-~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  323 (635)
T 4g8a_A          245 I-QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD  323 (635)
T ss_dssp             H-HTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG
T ss_pred             h-cCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc
Confidence            3 45555554444321111      1111                           122233445555555554443332


Q ss_pred             ccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCcc--CCccCC
Q psy11648        307 NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI--YPNAFV  384 (584)
Q Consensus       307 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~  384 (584)
                      ..  .  ...++.+++.+|.+......   .++.++.+.+..+......  ....+++|+.++++.|.+...  .+..+.
T Consensus       324 ~~--~--~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  394 (635)
T 4g8a_A          324 FS--Y--NFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDF  394 (635)
T ss_dssp             GG--S--CCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred             cc--c--chhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchh
Confidence            11  1  45566666666665544322   3455666666666554432  233567777787777776532  233445


Q ss_pred             CCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhC
Q psy11648        385 NLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFAD  464 (584)
Q Consensus       385 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  464 (584)
                      .+.+|+.+++..+.......    .......++.+++..++.........+..+++++.++++.|.+..++...+..+ +
T Consensus       395 ~~~~L~~L~~~~~~~~~~~~----~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~-~  469 (635)
T 4g8a_A          395 GTISLKYLDLSFNGVITMSS----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-S  469 (635)
T ss_dssp             SCSCCCEEECCSCSEEEECS----CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-T
T ss_pred             hhhhhhhhhccccccccccc----cccccccccchhhhhccccccccccccccccccccccccccccccccccccccc-h
Confidence            66777788777776544322    122456788888888887777666666778899999999998887776777777 8


Q ss_pred             CCcEEEccCCcc-cccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEc
Q psy11648        465 SLRKLYLDFNEI-KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNI  543 (584)
Q Consensus       465 ~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L  543 (584)
                      +++.|++++|.+ ....+..|..+++|++|++++|.+++..|..|.++++|++|++++|+++++++..|..+++|++|++
T Consensus       470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  549 (635)
T 4g8a_A          470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  549 (635)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred             hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence            999999999964 4556778899999999999999999998889999999999999999999999999999999999999


Q ss_pred             CCCcCCccCc-cccCC-CCcceEECCCCCCC
Q psy11648        544 SHNRLRSLPR-DVFSN-TIIEKLDISYNQDK  572 (584)
Q Consensus       544 ~~n~l~~lp~-~l~~~-~~L~~l~l~~n~l~  572 (584)
                      ++|+|++++. .+..+ ++|+.|++++|+++
T Consensus       550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             TTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            9999997654 45555 68999999999987

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.9e-42  Score=367.15  Aligned_cols=383  Identities=19%  Similarity=0.245  Sum_probs=292.2

Q ss_pred             ccCceeccchhhcCCccceeecccccccccccc-ccchhhHHHHHhhcCCCCCCcccchhH-hhccCCcEEEcCCCcccc
Q psy11648        125 HLGTTILKDREKLLSNLETLLLRCNKITDLNGN-LFRHLQKSIVKAKKNNNNNEDQVSDRE-KLLSNLETLLLRCNKITD  202 (584)
Q Consensus       125 ~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~  202 (584)
                      +|.++++|..+.++++|++|++++|.+++.... .+....  ...      .....|..+. ..+++|++|++++|.+.+
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~--~~~------~~~~ip~~l~~~~l~~L~~L~L~~n~l~~  263 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN--SEY------AQQYKTEDLKWDNLKDLTDVEVYNCPNLT  263 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT--SHH------HHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCccccccccccccccc--cch------hcccCchhhhhcccCCCCEEEecCCcCCc
Confidence            456667888899999999999999998883110 000000  000      0000122221 168999999999999998


Q ss_pred             cchhhhcCCCCCCEEEcCCCc-cce-eecCCcccccc------ccceEEeecccccCCCCchh--hHhhhcCCCCCEEEc
Q psy11648        203 LNGNLFRHLYNLQELSLSFNK-LQI-IELNSNVFDVF------EKLQLLEISFSLFNSNEFPY--YILNKNLNTLEWLAM  272 (584)
Q Consensus       203 ~~~~~~~~~~~L~~L~l~~~~-l~~-~~~~~~~~~~l------~~L~~L~l~~~~~~~~~l~~--~~~~~~~~~L~~L~l  272 (584)
                      ..|..+.++++|++|++++|+ +.+ .  .|..+..+      ++|++|++++|.+.  .+|.  .+  ..+++|++|++
T Consensus       264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~--lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l--~~l~~L~~L~L  337 (636)
T 4eco_A          264 KLPTFLKALPEMQLINVACNRGISGEQ--LKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSL--QKMKKLGMLEC  337 (636)
T ss_dssp             SCCTTTTTCSSCCEEECTTCTTSCHHH--HHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHH--TTCTTCCEEEC
T ss_pred             cChHHHhcCCCCCEEECcCCCCCcccc--chHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhh--ccCCCCCEEeC
Confidence            888899999999999999998 775 3  46667665      99999999999996  7887  55  79999999999


Q ss_pred             cCccccccccccccCCCCCcEEEcccCCCcccccccccccccCC-ccEEEcCCCcccccccccccCCC--CCcEEEccCC
Q psy11648        273 DNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR-LKEIRLSNNYLELIESDTFYNLK--ELNTITLSYN  349 (584)
Q Consensus       273 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~  349 (584)
                      ++|.+++..+ .+..+++|++|++++|.++.+|..+..   +++ |++|++++|.++.+ +..+....  +|+.|++++|
T Consensus       338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~---l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N  412 (636)
T 4eco_A          338 LYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCG---FTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYN  412 (636)
T ss_dssp             CSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEE---ECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSS
T ss_pred             cCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhh---hcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCC
Confidence            9999995555 889999999999999999988877544   788 99999999999954 55565544  8999999999


Q ss_pred             cCCCcChhhhc-------cCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECC
Q psy11648        350 LLKSIKTTSFK-------NLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS  422 (584)
Q Consensus       350 ~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~  422 (584)
                      .+.+..+..+.       .+++|+.|++++|.++.+.+..+..+++|++|++++|.++.++...+.....          
T Consensus       413 ~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~----------  482 (636)
T 4eco_A          413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE----------  482 (636)
T ss_dssp             CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE----------
T ss_pred             cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc----------
Confidence            99988877777       7789999999999999876556667999999999999998666544432200          


Q ss_pred             CCccccccccccccccCcccEEEccCCCCCCCChhhH-HHhhCCCcEEEccCCcccccCccccCCCcccCeeec------
Q psy11648        423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFL-QTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL------  495 (584)
Q Consensus       423 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l------  495 (584)
                                 ....+++|+.|++++|.++.+|...+ ..+ ++|++|++++|++.++ +..+..+++|++|++      
T Consensus       483 -----------~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l-~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~l  549 (636)
T 4eco_A          483 -----------NFKNTYLLTSIDLRFNKLTKLSDDFRATTL-PYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDA  549 (636)
T ss_dssp             -----------ECTTGGGCCEEECCSSCCCBCCGGGSTTTC-TTCCEEECCSSCCSSC-CCGGGGCSSCCEEECCSCBCT
T ss_pred             -----------cccccCCccEEECcCCcCCccChhhhhccC-CCcCEEECCCCCCCCc-ChhhhcCCCCCEEECCCCccc
Confidence                       00123477778888777777775444 355 7788888888887773 445667788888888      


Q ss_pred             cCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy11648        496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP  552 (584)
Q Consensus       496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp  552 (584)
                      ++|.+.+.+|..+..+++|++|++++|+++.++.. +.  ++|++|++++|++..++
T Consensus       550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-IT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CC--TTCCEEECCSCTTCEEE
T ss_pred             ccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-Hh--CcCCEEECcCCCCcccc
Confidence            45777788888888899999999999999666544 43  78999999999887543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.8e-41  Score=349.09  Aligned_cols=441  Identities=18%  Similarity=0.175  Sum_probs=293.5

Q ss_pred             EEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecccccccc
Q psy11648         74 TLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITD  153 (584)
Q Consensus        74 ~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~  153 (584)
                      ++|+++|+++.+|..++   .+|+  +|++++|.+++..+.                   .+.++++|++|++++|.+++
T Consensus         4 ~l~ls~n~l~~ip~~~~---~~L~--~L~Ls~n~i~~~~~~-------------------~~~~l~~L~~L~Ls~n~l~~   59 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS---QKTT--ILNISQNYISELWTS-------------------DILSLSKLRILIISHNRIQY   59 (520)
T ss_dssp             EEECTTSCCSSCCCSCC---TTCS--EEECCSSCCCCCCHH-------------------HHTTCTTCCEEECCSSCCCE
T ss_pred             eEecCCCCccccccccc---cccc--EEECCCCcccccChh-------------------hccccccccEEecCCCccCC
Confidence            45666666666665554   3355  666666655543332                   23334556666666665555


Q ss_pred             ccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCcc
Q psy11648        154 LNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNV  233 (584)
Q Consensus       154 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  233 (584)
                      +.+.                        .|. .+++|++|++++|.++.++..   .+++|++|++++|.+.+.. .|..
T Consensus        60 ~~~~------------------------~~~-~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~-~p~~  110 (520)
T 2z7x_B           60 LDIS------------------------VFK-FNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALP-ICKE  110 (520)
T ss_dssp             EEGG------------------------GGT-TCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCC-CCGG
T ss_pred             cChH------------------------Hhh-cccCCCEEecCCCceeecCcc---ccCCccEEeccCCcccccc-chhh
Confidence            4222                        222 455666666666665544332   4566666666666554421 2455


Q ss_pred             ccccccceEEeecccccCCCCchhhHhhhcCCCC--CEEEccCccc--cccccccccCCC-CCcEEEcccCCCc-ccccc
Q psy11648        234 FDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL--EWLAMDNNNI--KNIRNYSLYNLT-SLNYINLEYNKIS-KIHNN  307 (584)
Q Consensus       234 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L--~~L~l~~~~l--~~~~~~~l~~l~-~L~~L~l~~~~l~-~i~~~  307 (584)
                      +..+++|++|++++|.+. +   .. + ..+++|  ++|++++|.+  .+..+..+..+. ....+++++|.+. .++..
T Consensus       111 ~~~l~~L~~L~L~~n~l~-~---~~-~-~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~  184 (520)
T 2z7x_B          111 FGNMSQLKFLGLSTTHLE-K---SS-V-LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV  184 (520)
T ss_dssp             GGGCTTCCEEEEEESSCC-G---GG-G-GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCC
T ss_pred             hccCCcceEEEecCcccc-h---hh-c-cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhh
Confidence            666666666666666554 1   11 1 344555  6666666665  444333444333 1223455555544 23333


Q ss_pred             cccccccCCccEEEcCCCc-------ccccccccccCCCCCcEEEccCCcCCCcChhhh---ccCcCCCEEeccCCCCCc
Q psy11648        308 LFHFNIHKRLKEIRLSNNY-------LELIESDTFYNLKELNTITLSYNLLKSIKTTSF---KNLNNMLNIVLSFNQIKY  377 (584)
Q Consensus       308 ~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~  377 (584)
                      .+..  +++|+.+++++|.       +.+..+ .+..+++|+.+++++|.+.+.....+   ...++|+.|++++|.+.+
T Consensus       185 ~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  261 (520)
T 2z7x_B          185 SVKT--VANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG  261 (520)
T ss_dssp             CCTT--CSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES
T ss_pred             hhhc--ccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC
Confidence            3333  6666666666664       444333 46677788888888777654322111   124588888888888886


Q ss_pred             cCCccC-----CCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCC
Q psy11648        378 IYPNAF-----VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ  452 (584)
Q Consensus       378 ~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~  452 (584)
                      ..|..+     ..++.|+.+++++|.+ ..+...+........++.+++++|.+.....   ...+++|++|++++|.++
T Consensus       262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~  337 (520)
T 2z7x_B          262 QLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLT  337 (520)
T ss_dssp             CCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCC
T ss_pred             ccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccC
Confidence            667766     7888999999998888 5553444333233578999999988765542   135789999999999998


Q ss_pred             CCChhhHHHhhCCCcEEEccCCcccccC--ccccCCCcccCeeeccCcccccccc-cccCCCCCccEEECCCCCCCCcCc
Q psy11648        453 EVPVNFLQTFADSLRKLYLDFNEIKHLD--ATAFGNLDVLELLSLEHNNIAVVVK-RTFIGMPNLQIIDLSFNEISMLTG  529 (584)
Q Consensus       453 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~  529 (584)
                      ...+..+..+ ++|++|++++|++.+++  +..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|++++..+
T Consensus       338 ~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  416 (520)
T 2z7x_B          338 DTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF  416 (520)
T ss_dssp             TTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred             hhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence            7544667777 99999999999998743  4668899999999999999998444 458899999999999999987766


Q ss_pred             ccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCCCC
Q psy11648        530 EQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRP  583 (584)
Q Consensus       530 ~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~~~  583 (584)
                      ..+.  ++|++|++++|+++.+|..++.+++|++|++++|+++.+|...|..+|
T Consensus       417 ~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  468 (520)
T 2z7x_B          417 RCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT  468 (520)
T ss_dssp             GSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCC
Confidence            6553  799999999999999999999999999999999999999998776554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.4e-40  Score=350.57  Aligned_cols=451  Identities=15%  Similarity=0.139  Sum_probs=301.8

Q ss_pred             hhccccccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeee
Q psy11648         25 LQHLGTTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTL  101 (584)
Q Consensus        25 l~~Lr~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L  101 (584)
                      +...+++++++++++.+|.   +++++|++++|.+.++.+..|.++ ++|+ +|++++|++..++.+.|....+|+  +|
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~--~L  105 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFL-SELR-VLRLSHNRIRSLDFHVFLFNQDLE--YL  105 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTC-TTCC-EEECCSCCCCEECTTTTTTCTTCC--EE
T ss_pred             cCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccC-CCcc-EEECCCCCCCcCCHHHhCCCCCCC--EE
Confidence            3344677888888888877   788888888888888877788887 7888 888888888887777777666688  88


Q ss_pred             ecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccc
Q psy11648        102 DLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVS  181 (584)
Q Consensus       102 ~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  181 (584)
                      |+++|.++..                    |..  .+++|++|++++|.+++++.                       +.
T Consensus       106 ~Ls~N~l~~l--------------------p~~--~l~~L~~L~Ls~N~l~~l~~-----------------------p~  140 (562)
T 3a79_B          106 DVSHNRLQNI--------------------SCC--PMASLRHLDLSFNDFDVLPV-----------------------CK  140 (562)
T ss_dssp             ECTTSCCCEE--------------------CSC--CCTTCSEEECCSSCCSBCCC-----------------------CG
T ss_pred             ECCCCcCCcc--------------------Ccc--ccccCCEEECCCCCccccCc-----------------------hH
Confidence            8888877643                    222  46778888888887776532                       22


Q ss_pred             hhHhhccCCcEEEcCCCcccccchhhhcCCCCC--CEEEcCCCcc--ceeecCCccccccc-cceEEeecccccCCCCch
Q psy11648        182 DREKLLSNLETLLLRCNKITDLNGNLFRHLYNL--QELSLSFNKL--QIIELNSNVFDVFE-KLQLLEISFSLFNSNEFP  256 (584)
Q Consensus       182 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~l--~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~l~  256 (584)
                      .+. .+++|++|++++|.+...   .+..+++|  ++|++++|.+  .+.  .+..+..+. ..-.+++++|.+. +.++
T Consensus       141 ~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~--~~~~l~~l~~~~l~l~l~~n~~~-~~~~  213 (562)
T 3a79_B          141 EFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG--ETESLQIPNTTVLHLVFHPNSLF-SVQV  213 (562)
T ss_dssp             GGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS--SCCEEEECCEEEEEEEECSSSCC-CCCC
T ss_pred             hhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc--CcccccccCcceEEEEecCccch-hhhh
Confidence            343 678888888888877653   34444555  8888888776  444  455555543 1224466666655 3444


Q ss_pred             hhHhhhcCCCCCEEEccCcc-----ccccccccccCCCCCcEEEcccCCCcc-----cccccccccccCCccEEEcCCCc
Q psy11648        257 YYILNKNLNTLEWLAMDNNN-----IKNIRNYSLYNLTSLNYINLEYNKISK-----IHNNLFHFNIHKRLKEIRLSNNY  326 (584)
Q Consensus       257 ~~~~~~~~~~L~~L~l~~~~-----l~~~~~~~l~~l~~L~~L~l~~~~l~~-----i~~~~~~~~~~~~L~~L~l~~~~  326 (584)
                      ...+ ..+++|+.+++++|.     +.+... .+..++.|+.++++++.+..     ++... .   .++|++|++++|.
T Consensus       214 ~~~~-~~l~~L~~L~l~~n~~~~~~l~~~~~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~---~~~L~~L~l~~n~  287 (562)
T 3a79_B          214 NMSV-NALGHLQLSNIKLNDENCQRLMTFLS-ELTRGPTLLNVTLQHIETTWKCSVKLFQFF-W---PRPVEYLNIYNLT  287 (562)
T ss_dssp             EEEE-SSEEEEEEEEEECCSTTHHHHHHHHH-HHHSCSSCEEEEEEEEEECHHHHHHHHHHH-T---TSSEEEEEEEEEE
T ss_pred             hhcc-cccceEEEecccccccccchHHHHHH-HHhccCcceEEEecCCcCcHHHHHHHHHhh-h---cccccEEEEeccE
Confidence            4443 567778888877764     222222 45667777777777665441     22111 1   3477777777777


Q ss_pred             ccccccccc-----cCCCCCcEEEccCCcCCCcChhhhc---cCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCC
Q psy11648        327 LELIESDTF-----YNLKELNTITLSYNLLKSIKTTSFK---NLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNK  398 (584)
Q Consensus       327 ~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  398 (584)
                      +++..+..+     ..++.|+.+++..+.+ ......+.   ...+++.|++++|.+....  ....+++|++|++++|.
T Consensus       288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~  364 (562)
T 3a79_B          288 ITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNV  364 (562)
T ss_dssp             ECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC
T ss_pred             eeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCc
Confidence            765444443     4444455555555444 22112221   1245777777777665431  12456677777777776


Q ss_pred             CCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCCh--hhHHHhhCCCcEEEccCCcc
Q psy11648        399 LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV--NFLQTFADSLRKLYLDFNEI  476 (584)
Q Consensus       399 l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~~L~~L~l~~n~l  476 (584)
                      +++..+..+                            ..+++|++|++++|.++.++.  ..+..+ ++|++|++++|++
T Consensus       365 l~~~~~~~~----------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l  415 (562)
T 3a79_B          365 FTDSVFQGC----------------------------STLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSL  415 (562)
T ss_dssp             CCTTTTTTC----------------------------CSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCC
T ss_pred             cccchhhhh----------------------------cccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcC
Confidence            665433222                            225778888888888877653  345666 8888899988888


Q ss_pred             cc-cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc-
Q psy11648        477 KH-LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD-  554 (584)
Q Consensus       477 ~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-  554 (584)
                      .+ ++...+..+++|++|++++|.+++..+..+.  ++|++|++++|+++.+++..+ .+++|++|++++|+++.+|.. 
T Consensus       416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~  492 (562)
T 3a79_B          416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGV  492 (562)
T ss_dssp             BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTS
T ss_pred             CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHH
Confidence            87 6666688888999999999988876654443  689999999999887766555 888999999999999998887 


Q ss_pred             ccCCCCcceEECCCCCCC
Q psy11648        555 VFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       555 l~~~~~L~~l~l~~n~l~  572 (584)
                      +..+++|+.|++++|+++
T Consensus       493 ~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          493 FDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             TTTCTTCCCEECCSCCBC
T ss_pred             HhcCCCCCEEEecCCCcC
Confidence            677789999999999887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2e-40  Score=358.16  Aligned_cols=367  Identities=19%  Similarity=0.214  Sum_probs=294.7

Q ss_pred             CcccccchhhhcCCCCCCEEEcCCCccceee---------------cCCcccc--ccccceEEeecccccCCCCchhhHh
Q psy11648        198 NKITDLNGNLFRHLYNLQELSLSFNKLQIIE---------------LNSNVFD--VFEKLQLLEISFSLFNSNEFPYYIL  260 (584)
Q Consensus       198 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~---------------~~~~~~~--~l~~L~~L~l~~~~~~~~~l~~~~~  260 (584)
                      |.+++ +|..+.++++|++|++++|.+.+..               .+|..+.  .+++|+.|++++|.+. +.+|..+ 
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-~~iP~~l-  511 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-TQLPDFL-  511 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-CSCCGGG-
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-ccChHHH-
Confidence            56666 5667999999999999999887700               0466666  8999999999999877 7888776 


Q ss_pred             hhcCCCCCEEEccCcc-ccc-cccccc-------cCCCCCcEEEcccCCCccccc--ccccccccCCccEEEcCCCcccc
Q psy11648        261 NKNLNTLEWLAMDNNN-IKN-IRNYSL-------YNLTSLNYINLEYNKISKIHN--NLFHFNIHKRLKEIRLSNNYLEL  329 (584)
Q Consensus       261 ~~~~~~L~~L~l~~~~-l~~-~~~~~l-------~~l~~L~~L~l~~~~l~~i~~--~~~~~~~~~~L~~L~l~~~~~~~  329 (584)
                       ..+++|++|++++|. +++ ..|..+       ..+++|++|++++|.++.+|.  .+..   +++|+.|++++|.++.
T Consensus       512 -~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~---L~~L~~L~Ls~N~l~~  587 (876)
T 4ecn_A          512 -YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK---MVKLGLLDCVHNKVRH  587 (876)
T ss_dssp             -GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT---CTTCCEEECTTSCCCB
T ss_pred             -hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc---CCCCCEEECCCCCccc
Confidence             799999999999998 776 333333       345599999999999998876  4333   8999999999999984


Q ss_pred             cccccccCCCCCcEEEccCCcCCCcChhhhccCcC-CCEEeccCCCCCccCCccCCCCC--CCcEEecCCCCCCCCChhh
Q psy11648        330 IESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN-MLNIVLSFNQIKYIYPNAFVNLP--NLVKLDLQDNKLKDFNLNV  406 (584)
Q Consensus       330 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~  406 (584)
                      + + .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+..+ |..+...+  +|+.|++++|.+.+..+..
T Consensus       588 l-p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l  663 (876)
T 4ecn_A          588 L-E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNI  663 (876)
T ss_dssp             C-C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred             c-h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccc
Confidence            4 4 7888999999999999988 45667888888 99999999998854 66666554  4999999999988754432


Q ss_pred             hcccc--cCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhh------CCCcEEEccCCcccc
Q psy11648        407 FSNIT--SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFA------DSLRKLYLDFNEIKH  478 (584)
Q Consensus       407 ~~~~~--~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~------~~L~~L~l~~n~l~~  478 (584)
                      .....  ....|+.|++++|.++.++... +..+++|+.|++++|.++.+|...+....      ++|++|++++|++..
T Consensus       664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~-~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~  742 (876)
T 4ecn_A          664 SCSMDDYKGINASTVTLSYNEIQKFPTEL-FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS  742 (876)
T ss_dssp             SSCTTTCCCCCEEEEECCSSCCCSCCHHH-HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred             hhhhccccCCCcCEEEccCCcCCccCHHH-HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence            22211  3447899999999999665433 23478999999999999988876665430      389999999999986


Q ss_pred             cCccccC--CCcccCeeeccCcccccccccccCCCCCccEEECCC------CCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648        479 LDATAFG--NLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF------NEISMLTGEQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       479 ~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~------n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      ++. .+.  .+++|+.|++++|.+.+ +|..+..+++|+.|++++      |++.+..|..+..+++|++|+|++|+++.
T Consensus       743 lp~-~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~  820 (876)
T 4ecn_A          743 LSD-DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK  820 (876)
T ss_dssp             CCG-GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred             chH-HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc
Confidence            654 444  89999999999999998 677888999999999976      77888888899999999999999999999


Q ss_pred             cCccccCCCCcceEECCCCCCCCCCCCCCC
Q psy11648        551 LPRDVFSNTIIEKLDISYNQDKIRPGRESN  580 (584)
Q Consensus       551 lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~  580 (584)
                      +|..+.  ++|+.|+|++|++..++...|.
T Consensus       821 Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~  848 (876)
T 4ecn_A          821 VDEKLT--PQLYILDIADNPNISIDVTSVC  848 (876)
T ss_dssp             CCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred             cCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence            998866  6999999999999987765553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.6e-39  Score=346.48  Aligned_cols=499  Identities=20%  Similarity=0.223  Sum_probs=337.9

Q ss_pred             ccccccccccccccccc------ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceee
Q psy11648         27 HLGTTILKGDQLQGIFN------SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMT  100 (584)
Q Consensus        27 ~Lr~L~l~~~~l~~l~~------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~  100 (584)
                      .+|+||+++|+|+.+|.      ++|++|++++|+++++.+++|.++ ++|+ +|+|++|+++.+|.++|....+|+  +
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L-~~L~-~L~Ls~N~l~~l~~~~f~~L~~L~--~  128 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLS-TLILTGNPIQSLALGAFSGLSSLQ--K  128 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCC-EEECTTCCCCEECGGGGTTCTTCC--E
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCC-CCCC-EEEccCCcCCCCCHHHhcCCCCCC--E
Confidence            34455555555555543      555555555555555555555555 5555 555555555555555555555555  5


Q ss_pred             eecCCCceeeechhhhccchhccc----ccCce--eccchhhcCCccceeeccccccccccccccchhhH---HHHHhhc
Q psy11648        101 LDLSHNKLSVLNMATLYSNVTKLQ----HLGTT--ILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQK---SIVKAKK  171 (584)
Q Consensus       101 L~ls~~~l~~~~~~~~~~~~~l~~----~n~l~--~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~---~L~~L~l  171 (584)
                      |++++|.+++..+..|+.+..+..    .|.++  .+|..+..+++|++|++++|.++++.+..+..+..   ....+++
T Consensus       129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l  208 (635)
T 4g8a_A          129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  208 (635)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence            555555555554444444443322    34444  24556777888999999999888876665543221   1112333


Q ss_pred             C-CCCCCcccchhHhhccCCcEEEcCCCccc-ccchhhhcCCCCCCEEEcCCCc------cceeecCCccccccccceEE
Q psy11648        172 N-NNNNEDQVSDREKLLSNLETLLLRCNKIT-DLNGNLFRHLYNLQELSLSFNK------LQIIELNSNVFDVFEKLQLL  243 (584)
Q Consensus       172 ~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~------l~~~~~~~~~~~~l~~L~~L  243 (584)
                      + +....+.+..+  ....++.+++.++... ......+..+..++...+..+.      +...  ....+.....+...
T Consensus       209 s~n~l~~i~~~~~--~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~~~~l~~~  284 (635)
T 4g8a_A          209 SLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF--DKSALEGLCNLTIE  284 (635)
T ss_dssp             TTCCCCEECTTTT--TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC--CTTTTGGGGGSEEE
T ss_pred             ccCcccccCcccc--cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc--cccccccccchhhh
Confidence            3 44444444443  2345666777766543 2334456667777766654221      1111  23445555666666


Q ss_pred             eecccccCC--CCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEE
Q psy11648        244 EISFSLFNS--NEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIR  321 (584)
Q Consensus       244 ~l~~~~~~~--~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~  321 (584)
                      .+..+....  ...... + ....+++.+.+.++.+....  .+.....++.|++.++.+..++...     +..|+.+.
T Consensus       285 ~l~~~~~~~~~~~~~~~-~-~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~-----l~~L~~l~  355 (635)
T 4g8a_A          285 EFRLAYLDYYLDGIIDL-F-NCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLK-----LKSLKRLT  355 (635)
T ss_dssp             EEEEECCCSCEEECTTT-T-GGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCB-----CTTCCEEE
T ss_pred             hhhhhhhcccccchhhh-h-hhhccccccccccccccccc--ccccchhhhhhhcccccccCcCccc-----chhhhhcc
Confidence            665543320  111222 2 56678899999888877665  3566788999999999877665532     67888888


Q ss_pred             cCCCcccccccccccCCCCCcEEEccCCcCCC--cChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCC
Q psy11648        322 LSNNYLELIESDTFYNLKELNTITLSYNLLKS--IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL  399 (584)
Q Consensus       322 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  399 (584)
                      +..+......  ....++.|+.++++.|.+..  ..+..+..+.+|+.+++..+..... +..+..+++|+.+++..+..
T Consensus       356 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~  432 (635)
T 4g8a_A          356 FTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNL  432 (635)
T ss_dssp             EESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEE
T ss_pred             cccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccc
Confidence            8888766543  34567899999999998753  3345556778999999998887765 45677889999999998875


Q ss_pred             CCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCC-CCCChhhHHHhhCCCcEEEccCCcccc
Q psy11648        400 KDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI-QEVPVNFLQTFADSLRKLYLDFNEIKH  478 (584)
Q Consensus       400 ~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~~L~~L~l~~n~l~~  478 (584)
                      ......  ........++.++++.|.+........ ..+++++.|++++|.+ ..+.+..+..+ ++|++|++++|++.+
T Consensus       433 ~~~~~~--~~~~~l~~l~~l~ls~n~l~~~~~~~~-~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-~~L~~L~Ls~N~L~~  508 (635)
T 4g8a_A          433 KQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQ  508 (635)
T ss_dssp             ESTTSS--CTTTTCTTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCE
T ss_pred             cccccc--ccccccccccccccccccccccccccc-ccchhhhhhhhhhcccccccCchhhhhc-cccCEEECCCCccCC
Confidence            544322  122345688999999998887665443 3478999999999874 34455677777 999999999999999


Q ss_pred             cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCC-CCccEEEcCCCcCC
Q psy11648        479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS-FKLRILNISHNRLR  549 (584)
Q Consensus       479 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~-~~L~~L~L~~n~l~  549 (584)
                      +++..|.++++|++|++++|.+++..+..|..+++|++|++++|+++++++..+..+ ++|++|++++|.++
T Consensus       509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            999999999999999999999999988899999999999999999999999999887 68999999998876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.5e-39  Score=346.96  Aligned_cols=403  Identities=17%  Similarity=0.231  Sum_probs=248.8

Q ss_pred             ccCceeccchhhcCCccceeecccccccccccc-ccchh-hHHHHHhhcCCCCCCcccchh-HhhccCCcEEEcCCCccc
Q psy11648        125 HLGTTILKDREKLLSNLETLLLRCNKITDLNGN-LFRHL-QKSIVKAKKNNNNNEDQVSDR-EKLLSNLETLLLRCNKIT  201 (584)
Q Consensus       125 ~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  201 (584)
                      .|.++++|..+.++++|++|++++|.+++.... .+... ...+         ....|..+ ...+++|+.|++++|.+.
T Consensus       434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~---------~g~iP~~l~f~~L~~L~~L~Ls~N~l~  504 (876)
T 4ecn_A          434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA---------KQYENEELSWSNLKDLTDVELYNCPNM  504 (876)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH---------HHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred             cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccc---------cccCChhhhhccCCCCCEEECcCCCCC
Confidence            467778999999999999999999998872100 00000 0000         00012221 015677888888887777


Q ss_pred             ccchhhhcCCCCCCEEEcCCCc-cce-eecCCccccccc-------cceEEeecccccCCCCchh--hHhhhcCCCCCEE
Q psy11648        202 DLNGNLFRHLYNLQELSLSFNK-LQI-IELNSNVFDVFE-------KLQLLEISFSLFNSNEFPY--YILNKNLNTLEWL  270 (584)
Q Consensus       202 ~~~~~~~~~~~~L~~L~l~~~~-l~~-~~~~~~~~~~l~-------~L~~L~l~~~~~~~~~l~~--~~~~~~~~~L~~L  270 (584)
                      +..|..+.++++|++|++++|+ +.+ .  .|..+..++       +|+.|++++|.+.  .+|.  .+  ..+++|++|
T Consensus       505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~--iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l--~~L~~L~~L  578 (876)
T 4ecn_A          505 TQLPDFLYDLPELQSLNIACNRGISAAQ--LKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASL--QKMVKLGLL  578 (876)
T ss_dssp             CSCCGGGGGCSSCCEEECTTCTTSCHHH--HHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHH--TTCTTCCEE
T ss_pred             ccChHHHhCCCCCCEEECcCCCCccccc--chHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhh--hcCCCCCEE
Confidence            7667777778888888888776 654 2  344444443       7777777777764  5665  43  567777777


Q ss_pred             EccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCC-ccEEEcCCCcccccccccccCCC--CCcEEEcc
Q psy11648        271 AMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR-LKEIRLSNNYLELIESDTFYNLK--ELNTITLS  347 (584)
Q Consensus       271 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~  347 (584)
                      ++++|.++.++  .+..+++|++|++++|.+..++..+..   +++ |+.|++++|.++.+ +..+...+  +|+.|+++
T Consensus       579 ~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~---l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls  652 (876)
T 4ecn_A          579 DCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCA---FTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFS  652 (876)
T ss_dssp             ECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCTTSCE---ECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECC
T ss_pred             ECCCCCcccch--hhcCCCcceEEECcCCccccchHHHhh---ccccCCEEECcCCCCCcC-chhhhccccCCCCEEECc
Confidence            77777776444  566777777777777776666655433   565 77777777766633 34444433  26666666


Q ss_pred             CCcCCCcChhh---hc--cCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECC
Q psy11648        348 YNLLKSIKTTS---FK--NLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS  422 (584)
Q Consensus       348 ~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~  422 (584)
                      +|.+.+..+..   +.  .+++|+.|++++|.+..+.+..+..+++|+.|++++|.+..++...+....           
T Consensus       653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~-----------  721 (876)
T 4ecn_A          653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD-----------  721 (876)
T ss_dssp             SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT-----------
T ss_pred             CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc-----------
Confidence            66665543211   11  223555555555555544322333455555555555555543332221110           


Q ss_pred             CCccccccccccccccCcccEEEccCCCCCCCChhhH-HHhhCCCcEEEccCCcccccCccccCCCcccCeeeccC----
Q psy11648        423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFL-QTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH----  497 (584)
Q Consensus       423 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~----  497 (584)
                                .....+++|+.|++++|.++.+|.... ..+ ++|+.|++++|++.++ +..+..+++|+.|++++    
T Consensus       722 ----------~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l-~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~l  789 (876)
T 4ecn_A          722 ----------GNYKNTYLLTTIDLRFNKLTSLSDDFRATTL-PYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDA  789 (876)
T ss_dssp             ----------SCCTTGGGCCEEECCSSCCCCCCGGGSTTTC-TTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCT
T ss_pred             ----------ccccccCCccEEECCCCCCccchHHhhhccC-CCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCc
Confidence                      001123478888888888887775443 255 7888888888888774 44566788888888865    


Q ss_pred             --cccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc-CCCCcceEECCCCCCCCC
Q psy11648        498 --NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF-SNTIIEKLDISYNQDKIR  574 (584)
Q Consensus       498 --n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~-~~~~L~~l~l~~n~l~~~  574 (584)
                        |.+.+.+|..+..+++|+.|++++|++..++.. +.  ++|+.|+|++|++..+....+ ....+..+.+.+|+...+
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~-l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I  866 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK-LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI  866 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCCCccCHh-hc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence              777788888888899999999999999655544 43  689999999998886543222 223455556666655543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1e-37  Score=328.84  Aligned_cols=378  Identities=19%  Similarity=0.180  Sum_probs=244.7

Q ss_pred             hccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648        186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN  265 (584)
Q Consensus       186 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~  265 (584)
                      .+++|++|++++|.++.++..   .+++|++|++++|.+.+.. .+..|..+++|++|++++|.+. + ..   + ..++
T Consensus        98 ~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~-~-~~---~-~~l~  167 (562)
T 3a79_B           98 FNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFR-Q-LD---L-LPVA  167 (562)
T ss_dssp             TCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCC-T-TT---T-GGGT
T ss_pred             CCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccc-c-Cc---h-hhhh
Confidence            345555555555555543332   4555555555555554421 1244555555555555555543 1 11   1 2233


Q ss_pred             CC--CEEEccCccc--cccccccccCCC-CCcEEEcccCCCcc-cccccccccccCCccEEEcCCCc-----cccccccc
Q psy11648        266 TL--EWLAMDNNNI--KNIRNYSLYNLT-SLNYINLEYNKISK-IHNNLFHFNIHKRLKEIRLSNNY-----LELIESDT  334 (584)
Q Consensus       266 ~L--~~L~l~~~~l--~~~~~~~l~~l~-~L~~L~l~~~~l~~-i~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~  334 (584)
                      +|  ++|++++|.+  ++..+..+..+. ..-.+++++|.+.. ++...+..  +++|+.+++++|.     +.+. ...
T Consensus       168 ~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~--l~~L~~L~l~~n~~~~~~l~~~-~~~  244 (562)
T 3a79_B          168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA--LGHLQLSNIKLNDENCQRLMTF-LSE  244 (562)
T ss_dssp             TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESS--EEEEEEEEEECCSTTHHHHHHH-HHH
T ss_pred             hceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccc--cceEEEecccccccccchHHHH-HHH
Confidence            33  5566655555  444333443332 11133455554442 22222222  5666666666653     1111 123


Q ss_pred             ccCCCCCcEEEccCCcCCCcChh---hhccCcCCCEEeccCCCCCccCCccC-----CCCCCCcEEecCCCCCCCCChhh
Q psy11648        335 FYNLKELNTITLSYNLLKSIKTT---SFKNLNNMLNIVLSFNQIKYIYPNAF-----VNLPNLVKLDLQDNKLKDFNLNV  406 (584)
Q Consensus       335 l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~  406 (584)
                      +..++.++.+++.++.+.+....   .....++|++|++++|.+.+..|..+     ..++.|+.+++..+.+ ..+...
T Consensus       245 l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~  323 (562)
T 3a79_B          245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEA  323 (562)
T ss_dssp             HHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHH
T ss_pred             HhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhh
Confidence            55667777777776665532111   11123478888888888776556555     5566666666666665 444333


Q ss_pred             hcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccC--cccc
Q psy11648        407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLD--ATAF  484 (584)
Q Consensus       407 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l  484 (584)
                      +........++.+++++|.+.....   ...+++|++|++++|.++...+..+..+ ++|++|++++|++.+++  +..+
T Consensus       324 ~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~  399 (562)
T 3a79_B          324 LYSVFAEMNIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMT  399 (562)
T ss_dssp             HHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSC-SSCCEEECCSSCCCBTTHHHHTT
T ss_pred             hhhhhccCcceEEEccCCCcccccC---ccCCCCceEEECCCCccccchhhhhccc-CCCCEEECCCCCcCCcccchhhh
Confidence            3333234578899999888765442   1357899999999999987555677777 99999999999998765  3568


Q ss_pred             CCCcccCeeeccCccccc-ccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcce
Q psy11648        485 GNLDVLELLSLEHNNIAV-VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEK  563 (584)
Q Consensus       485 ~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~  563 (584)
                      ..+++|++|++++|.+.+ ..+..+..+++|++|++++|++++..+..+.  ++|++|++++|+++.+|..++.+++|+.
T Consensus       400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~  477 (562)
T 3a79_B          400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQE  477 (562)
T ss_dssp             TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSE
T ss_pred             cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCE
Confidence            899999999999999998 4444688999999999999999876665443  7999999999999999999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCCC
Q psy11648        564 LDISYNQDKIRPGRESNPRP  583 (584)
Q Consensus       564 l~l~~n~l~~~p~~~~~~~~  583 (584)
                      |++++|+++.+|...|...|
T Consensus       478 L~L~~N~l~~l~~~~~~~l~  497 (562)
T 3a79_B          478 LNVASNQLKSVPDGVFDRLT  497 (562)
T ss_dssp             EECCSSCCCCCCTTSTTTCT
T ss_pred             EECCCCCCCCCCHHHHhcCC
Confidence            99999999999998776654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.7e-37  Score=315.82  Aligned_cols=374  Identities=22%  Similarity=0.300  Sum_probs=257.2

Q ss_pred             cEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEE
Q psy11648        191 ETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWL  270 (584)
Q Consensus       191 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L  270 (584)
                      +.++.++++++.++.  +  .++|++|++++|.+.+.  .+..|..+++|++|++++|.+. +.++...+ ..+++|++|
T Consensus        13 ~~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~n~~~-~~i~~~~~-~~l~~L~~L   84 (455)
T 3v47_A           13 YNAICINRGLHQVPE--L--PAHVNYVDLSLNSIAEL--NETSFSRLQDLQFLKVEQQTPG-LVIRNNTF-RGLSSLIIL   84 (455)
T ss_dssp             TEEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEE--CTTTTSSCTTCCEEECCCCSTT-CEECTTTT-TTCTTCCEE
T ss_pred             cccCcCCCCcccCCC--C--CCccCEEEecCCccCcC--ChhHhccCccccEEECcCCccc-ceECcccc-cccccCCEE
Confidence            344555555544433  1  14566666666666555  4555666666666666666554 34444333 566666666


Q ss_pred             EccCccccccccccccCCCCCcEEEcccCCCcc--cccccccccccCCccEEEcCCCccccccccc-ccCCCCCcEEEcc
Q psy11648        271 AMDNNNIKNIRNYSLYNLTSLNYINLEYNKISK--IHNNLFHFNIHKRLKEIRLSNNYLELIESDT-FYNLKELNTITLS  347 (584)
Q Consensus       271 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~--i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~  347 (584)
                      ++++|.+++..+..+..+++|++|++++|.+++  .....+..  +++|++|++++|.++...+.. +..+++|++|+++
T Consensus        85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A           85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP--LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT--CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC--cccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            666666666555566666666666666666653  22222333  566666666666666654443 5566666666666


Q ss_pred             CCcCCCcChhhhccC--cCCCEEeccCCCCCccCCcc--------CCCCCCCcEEecCCCCCCCCChhhhcccccCCCCc
Q psy11648        348 YNLLKSIKTTSFKNL--NNMLNIVLSFNQIKYIYPNA--------FVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM  417 (584)
Q Consensus       348 ~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~  417 (584)
                      +|.+.+..+..+..+  ..++.+++++|.+.+..+..        +..+++|++|++++|.+++..+..+........++
T Consensus       163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~  242 (455)
T 3v47_A          163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ  242 (455)
T ss_dssp             TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred             CCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccccee
Confidence            666666555555443  45666666666666543322        22456677777777776665555544443445666


Q ss_pred             eEECCCCccccccc----------cc-cccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCC
Q psy11648        418 NLNLSNNYITNLYE----------ND-KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGN  486 (584)
Q Consensus       418 ~L~l~~~~l~~~~~----------~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  486 (584)
                      .+++++|.......          .. .....++|++|++++|.++.+++..+..+ ++|++|++++|++.+.++..|..
T Consensus       243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~  321 (455)
T 3v47_A          243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWG  321 (455)
T ss_dssp             EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTT
T ss_pred             eEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcC
Confidence            77776664332111          00 11124689999999999998877888888 99999999999999998889999


Q ss_pred             CcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccc-cCCCCcceEE
Q psy11648        487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV-FSNTIIEKLD  565 (584)
Q Consensus       487 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l-~~~~~L~~l~  565 (584)
                      +++|++|++++|.+.+..+..|..+++|++|++++|+++++.+..|..+++|++|++++|+++.+|... ..+++|+.|+
T Consensus       322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  401 (455)
T 3v47_A          322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW  401 (455)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence            999999999999999888889999999999999999999999999999999999999999999988765 5679999999


Q ss_pred             CCCCCCC-CCC
Q psy11648        566 ISYNQDK-IRP  575 (584)
Q Consensus       566 l~~n~l~-~~p  575 (584)
                      +++|+++ ..|
T Consensus       402 l~~N~l~~~~~  412 (455)
T 3v47_A          402 LHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCBCCCTT
T ss_pred             ccCCCcccCCC
Confidence            9999998 555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-35  Score=304.36  Aligned_cols=374  Identities=23%  Similarity=0.286  Sum_probs=285.6

Q ss_pred             ceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCccc-ccchh
Q psy11648        128 TTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKIT-DLNGN  206 (584)
Q Consensus       128 l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~  206 (584)
                      ++.+|. +.  ++|++|++++|.++++.+.                        .+. .+++|++|++++|.+. .+.+.
T Consensus        22 l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~------------------------~~~-~l~~L~~L~L~~n~~~~~i~~~   73 (455)
T 3v47_A           22 LHQVPE-LP--AHVNYVDLSLNSIAELNET------------------------SFS-RLQDLQFLKVEQQTPGLVIRNN   73 (455)
T ss_dssp             CSSCCC-CC--TTCCEEECCSSCCCEECTT------------------------TTS-SCTTCCEEECCCCSTTCEECTT
T ss_pred             cccCCC-CC--CccCEEEecCCccCcCChh------------------------Hhc-cCccccEEECcCCcccceECcc
Confidence            334554 22  6899999999988877443                        333 6789999999999886 45567


Q ss_pred             hhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhh-HhhhcCCCCCEEEccCcccccccccc-
Q psy11648        207 LFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY-ILNKNLNTLEWLAMDNNNIKNIRNYS-  284 (584)
Q Consensus       207 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~-  284 (584)
                      .|.++++|++|++++|.+.+.  .+..+..+++|++|++++|.+. +.++.. .+ ..+++|++|++++|.+++..+.. 
T Consensus        74 ~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~  149 (455)
T 3v47_A           74 TFRGLSSLIILKLDYNQFLQL--ETGAFNGLANLEVLTLTQCNLD-GAVLSGNFF-KPLTSLEMLVLRDNNIKKIQPASF  149 (455)
T ss_dssp             TTTTCTTCCEEECTTCTTCEE--CTTTTTTCTTCCEEECTTSCCB-THHHHSSTT-TTCTTCCEEECCSSBCCSCCCCGG
T ss_pred             cccccccCCEEeCCCCccCcc--ChhhccCcccCCEEeCCCCCCC-ccccCcccc-cCcccCCEEECCCCccCccCcccc
Confidence            788999999999999998877  7888899999999999999886 434433 23 78889999999999988876544 


Q ss_pred             ccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCccccccccc--------ccCCCCCcEEEccCCcCCCcCh
Q psy11648        285 LYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDT--------FYNLKELNTITLSYNLLKSIKT  356 (584)
Q Consensus       285 l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~  356 (584)
                      +..+++|++|++++|.+..+....+..-...+++.+++++|.+....+..        +..+++|++|++++|.+.+..+
T Consensus       150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  229 (455)
T 3v47_A          150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA  229 (455)
T ss_dssp             GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred             cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence            78889999999999988877665554322367888888888887654432        2345678888888888776655


Q ss_pred             hhhccC---cCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccc
Q psy11648        357 TSFKNL---NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYEND  433 (584)
Q Consensus       357 ~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~  433 (584)
                      ..+...   ++++.+++++|...+...              ..+.+.+.....+..+ ....++.+++++|.+....+..
T Consensus       230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~  294 (455)
T 3v47_A          230 KRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGL-EASGVKTCDLSKSKIFALLKSV  294 (455)
T ss_dssp             HHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGG-TTSCCCEEECCSSCCCEECTTT
T ss_pred             hhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccc-cccCceEEEecCccccccchhh
Confidence            554433   677777777765443211              1111122222222222 3356778888888777654433


Q ss_pred             cccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCC
Q psy11648        434 KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPN  513 (584)
Q Consensus       434 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  513 (584)
                       +..+++|++|++++|.++.+++..+..+ ++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..|..+++
T Consensus       295 -~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  372 (455)
T 3v47_A          295 -FSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN  372 (455)
T ss_dssp             -TTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             -cccCCCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence             2447899999999999998877788888 99999999999999988889999999999999999999998899999999


Q ss_pred             ccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648        514 LQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       514 L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      |++|++++|+++++++..|..+++|++|++++|+++.
T Consensus       373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            9999999999999999888999999999999999884

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.2e-35  Score=300.31  Aligned_cols=404  Identities=23%  Similarity=0.260  Sum_probs=233.5

Q ss_pred             cceeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccc
Q psy11648         69 ACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRC  148 (584)
Q Consensus        69 ~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~  148 (584)
                      .+|+ ++++++|.++.+|.++....+ |+  +|++++|.+.+..+..++.+..+...    .+.  -....++++|++++
T Consensus        11 ~~L~-~L~l~~n~l~~iP~~i~~L~~-L~--~L~l~~n~~~~~~p~~~~~l~~L~~l----~l~--~c~~~~l~~L~l~~   80 (454)
T 1jl5_A           11 TFLQ-EPLRHSSNLTEMPVEAENVKS-KT--EYYNAWSEWERNAPPGNGEQREMAVS----RLR--DCLDRQAHELELNN   80 (454)
T ss_dssp             ------------------------CC-HH--HHHHHHHHHHHTSCTTSCCCHHHHHH----HHH--HHHHHTCSEEECTT
T ss_pred             ccch-hhhcccCchhhCChhHhcccc-hh--hhhccCCcccccCCcccccchhcchh----hhh--hhhccCCCEEEecC
Confidence            5677 888888888888877655555 88  88888887776655555544321100    000  00113567788888


Q ss_pred             cccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceee
Q psy11648        149 NKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIE  228 (584)
Q Consensus       149 n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  228 (584)
                      |++++++.                             ..++|++|++++|.+++++.    ..++|++|++++|.+.++ 
T Consensus        81 ~~l~~lp~-----------------------------~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l-  126 (454)
T 1jl5_A           81 LGLSSLPE-----------------------------LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKAL-  126 (454)
T ss_dssp             SCCSCCCS-----------------------------CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCC-
T ss_pred             CccccCCC-----------------------------CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcc-
Confidence            77776522                             23678888888888877432    247888888888877654 


Q ss_pred             cCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCccccccc
Q psy11648        229 LNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL  308 (584)
Q Consensus       229 ~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~  308 (584)
                        +..   .++|++|++++|.+.  .+|.  + ..+++|++|++++|.+++++. .   .++|++|++++|.++.++.  
T Consensus       127 --~~~---~~~L~~L~L~~n~l~--~lp~--~-~~l~~L~~L~l~~N~l~~lp~-~---~~~L~~L~L~~n~l~~l~~--  190 (454)
T 1jl5_A          127 --SDL---PPLLEYLGVSNNQLE--KLPE--L-QNSSFLKIIDVDNNSLKKLPD-L---PPSLEFIAAGNNQLEELPE--  190 (454)
T ss_dssp             --CSC---CTTCCEEECCSSCCS--SCCC--C-TTCTTCCEEECCSSCCSCCCC-C---CTTCCEEECCSSCCSSCCC--
T ss_pred             --cCC---CCCCCEEECcCCCCC--CCcc--c-CCCCCCCEEECCCCcCcccCC-C---cccccEEECcCCcCCcCcc--
Confidence              211   167888888888875  4763  3 788888888888888877543 2   3578888888888887662  


Q ss_pred             ccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCC
Q psy11648        309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPN  388 (584)
Q Consensus       309 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  388 (584)
                      +..  +++|+.|++++|.+++...    ..++|++|++++|.+..+ + .+..+++|+.|++++|.++++ |.   ..++
T Consensus       191 ~~~--l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~  258 (454)
T 1jl5_A          191 LQN--LPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTL-PD---LPPS  258 (454)
T ss_dssp             CTT--CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSC-CS---CCTT
T ss_pred             ccC--CCCCCEEECCCCcCCcCCC----CcCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCcc-cc---cccc
Confidence            333  7888888888888776432    125788888888887754 3 367788888888888887765 32   2477


Q ss_pred             CcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcE
Q psy11648        389 LVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRK  468 (584)
Q Consensus       389 L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~  468 (584)
                      |++|++++|.+++++.       ....++.+++++|.+++++..     .++|++|++++|.++.++     .++++|++
T Consensus       259 L~~L~l~~N~l~~l~~-------~~~~L~~L~ls~N~l~~l~~~-----~~~L~~L~l~~N~l~~i~-----~~~~~L~~  321 (454)
T 1jl5_A          259 LEALNVRDNYLTDLPE-------LPQSLTFLDVSENIFSGLSEL-----PPNLYYLNASSNEIRSLC-----DLPPSLEE  321 (454)
T ss_dssp             CCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSEESCC-----CTTCCEEECCSSCCSEEC-----CCCTTCCE
T ss_pred             cCEEECCCCcccccCc-------ccCcCCEEECcCCccCcccCc-----CCcCCEEECcCCcCCccc-----CCcCcCCE
Confidence            8888888888776432       124678888888887765421     367888888888777654     12257888


Q ss_pred             EEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCC--cCcccccCC-----------
Q psy11648        469 LYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM--LTGEQFYFS-----------  535 (584)
Q Consensus       469 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~--~~~~~~~~~-----------  535 (584)
                      |++++|++.+++.    .+++|++|++++|.++. +|.   .+++|++|++++|++++  ..|..+..+           
T Consensus       322 L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~  393 (454)
T 1jl5_A          322 LNVSNNKLIELPA----LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE  393 (454)
T ss_dssp             EECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred             EECCCCccccccc----cCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence            8888888776543    24778888888887774 333   46788888888888877  344555444           


Q ss_pred             --CCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        536 --FKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       536 --~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                        ++|++|++++|+++++|.-   -++++.+.+.+|.+.
T Consensus       394 ~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~  429 (454)
T 1jl5_A          394 LPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVV  429 (454)
T ss_dssp             ---------------------------------------
T ss_pred             ccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccC
Confidence              6677777777776643311   035666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-34  Score=298.14  Aligned_cols=351  Identities=27%  Similarity=0.331  Sum_probs=264.9

Q ss_pred             hccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648        186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN  265 (584)
Q Consensus       186 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~  265 (584)
                      .+++++.|+++++.+..+.  .+..+++|++|++++|.+.+.   +. +..+++|++|++++|.+.  .++.  + ..++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~---~~-~~~l~~L~~L~l~~n~l~--~~~~--~-~~l~  112 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDI---TP-LKNLTKLVDILMNNNQIA--DITP--L-ANLT  112 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCC--CCGG--G-TTCT
T ss_pred             HhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCc---hh-hhccccCCEEECCCCccc--cChh--h-cCCC
Confidence            4678888888888877654  377788888888888877665   22 778888888888888775  4444  3 6888


Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648        266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT  345 (584)
Q Consensus       266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  345 (584)
                      +|++|++++|.+++.++  +..+++|++|++++|.+..++.  +..  +++|+.|++. +.+....  .+..+++|+.|+
T Consensus       113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~--l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~  183 (466)
T 1o6v_A          113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSG--LTSLQQLSFG-NQVTDLK--PLANLTTLERLD  183 (466)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTT--CTTCSEEEEE-ESCCCCG--GGTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh--hcc--CCcccEeecC-CcccCch--hhccCCCCCEEE
Confidence            88888888888887754  7788888888888888776653  233  7888888885 3444332  367788888888


Q ss_pred             ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648        346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY  425 (584)
Q Consensus       346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~  425 (584)
                      +++|.+.+.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++.+     .+..++.++.|++++|.
T Consensus       184 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~  254 (466)
T 1o6v_A          184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQ  254 (466)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSC
T ss_pred             CcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-----hhhcCCCCCEEECCCCc
Confidence            888887765  246778888888888888877643  667788888888888877642     23345678888888888


Q ss_pred             cccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc
Q psy11648        426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK  505 (584)
Q Consensus       426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  505 (584)
                      +.....   ...+++|+.|++++|.++.++.  +..+ ++|++|++++|++.+.++  +..+++|++|++++|.+.+..+
T Consensus       255 l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          255 ISNLAP---LSGLTKLTELKLGANQISNISP--LAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             CCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             cccchh---hhcCCCCCEEECCCCccCcccc--ccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            877654   4457888888888888887764  6666 888888888888877654  6778888888888888887655


Q ss_pred             cccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCC
Q psy11648        506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRE  578 (584)
Q Consensus       506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~  578 (584)
                        +..+++|++|++++|+++++  ..+..+++|++|++++|+++.++. +..+++|+.|++++|+++.+|...
T Consensus       327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~~  394 (466)
T 1o6v_A          327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNY  394 (466)
T ss_dssp             --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBCC
T ss_pred             --hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchhh
Confidence              67888888888888888876  347788888888888888887665 777788888888888888766554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.4e-35  Score=301.78  Aligned_cols=401  Identities=22%  Similarity=0.283  Sum_probs=209.0

Q ss_pred             hhhccccccccccccccccc-----ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccce
Q psy11648         24 KLQHLGTTILKGDQLQGIFN-----SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ   98 (584)
Q Consensus        24 ~l~~Lr~L~l~~~~l~~l~~-----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~   98 (584)
                      +.++||+|++++|.+..+|.     ++|++|++++|.+.+..+..+.++ .+|+ .+++++|..           ..++ 
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l-~~L~-~l~l~~c~~-----------~~l~-   74 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ-REMA-VSRLRDCLD-----------RQAH-   74 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCC-HHHH-HHHHHHHHH-----------HTCS-
T ss_pred             ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccc-hhcc-hhhhhhhhc-----------cCCC-
Confidence            45677777888887777775     777777777777777777777666 5554 444333321           1244 


Q ss_pred             eeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCc
Q psy11648         99 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNED  178 (584)
Q Consensus        99 ~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~  178 (584)
                       +|++++|.+++..                    ..   .++|++|++++|.+++++.                      
T Consensus        75 -~L~l~~~~l~~lp--------------------~~---~~~L~~L~l~~n~l~~lp~----------------------  108 (454)
T 1jl5_A           75 -ELELNNLGLSSLP--------------------EL---PPHLESLVASCNSLTELPE----------------------  108 (454)
T ss_dssp             -EEECTTSCCSCCC--------------------SC---CTTCSEEECCSSCCSSCCC----------------------
T ss_pred             -EEEecCCccccCC--------------------CC---cCCCCEEEccCCcCCcccc----------------------
Confidence             5555555443311                    10   1345555555554444311                      


Q ss_pred             ccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhh
Q psy11648        179 QVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY  258 (584)
Q Consensus       179 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~  258 (584)
                             ..++|+.|++++|.++++..  +  .++|++|++++|.+.++   + .+..+++|++|++++|.+.  .+|. 
T Consensus       109 -------~~~~L~~L~l~~n~l~~l~~--~--~~~L~~L~L~~n~l~~l---p-~~~~l~~L~~L~l~~N~l~--~lp~-  170 (454)
T 1jl5_A          109 -------LPQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNNQLEKL---P-ELQNSSFLKIIDVDNNSLK--KLPD-  170 (454)
T ss_dssp             -------CCTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSSCCSSC---C-CCTTCTTCCEEECCSSCCS--CCCC-
T ss_pred             -------ccCCCcEEECCCCccCcccC--C--CCCCCEEECcCCCCCCC---c-ccCCCCCCCEEECCCCcCc--ccCC-
Confidence                   12445555555554443221  0  13455555555554432   2 3455555555555555543  2332 


Q ss_pred             HhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCC
Q psy11648        259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNL  338 (584)
Q Consensus       259 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  338 (584)
                          ..++|++|++++|.+++++  .+..+++|++|++++|.+++++..      .++|+.|++++|.++.+.  .+..+
T Consensus       171 ----~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~n~l~~lp--~~~~l  236 (454)
T 1jl5_A          171 ----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILEELP--ELQNL  236 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC------CTTCCEEECCSSCCSSCC--CCTTC
T ss_pred             ----CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC------cCcccEEECcCCcCCccc--ccCCC
Confidence                2235666666666666543  366666666666666666655442      346666666666666432  25666


Q ss_pred             CCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCce
Q psy11648        339 KELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN  418 (584)
Q Consensus       339 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~  418 (584)
                      ++|++|++++|.+.++..    ..++|+.|++++|.+.++ |..   .++|++|++++|.+++.+.     .  .+.++.
T Consensus       237 ~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l~~-----~--~~~L~~  301 (454)
T 1jl5_A          237 PFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGLSE-----L--PPNLYY  301 (454)
T ss_dssp             TTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEESC-----C--CTTCCE
T ss_pred             CCCCEEECCCCcCCcccc----cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcccC-----c--CCcCCE
Confidence            777777777776665421    236777777777777664 322   3677788888777765321     1  146778


Q ss_pred             EECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCc
Q psy11648        419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN  498 (584)
Q Consensus       419 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  498 (584)
                      +++++|.++.++.     ..++|++|++++|.++.+|..    + ++|++|++++|++..++.    .+++|++|++++|
T Consensus       302 L~l~~N~l~~i~~-----~~~~L~~L~Ls~N~l~~lp~~----~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N  367 (454)
T 1jl5_A          302 LNASSNEIRSLCD-----LPPSLEELNVSNNKLIELPAL----P-PRLERLIASFNHLAEVPE----LPQNLKQLHVEYN  367 (454)
T ss_dssp             EECCSSCCSEECC-----CCTTCCEEECCSSCCSCCCCC----C-TTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred             EECcCCcCCcccC-----CcCcCCEEECCCCcccccccc----C-CcCCEEECCCCccccccc----hhhhccEEECCCC
Confidence            8888887776442     135899999999999888743    3 899999999999987655    4689999999999


Q ss_pred             cccc--ccccccCCC-------------CCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        499 NIAV--VVKRTFIGM-------------PNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       499 ~~~~--~~~~~~~~~-------------~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      .+.+  .+|..+..+             ++|+.|++++|++++++.  +  .+.++.|.+.+|.+.
T Consensus       368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~--i--P~sl~~L~~~~~~~~  429 (454)
T 1jl5_A          368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD--I--PESVEDLRMNSERVV  429 (454)
T ss_dssp             CCSSCCCCCTTCCEEECCC-----------------------------------------------
T ss_pred             CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc--c--hhhHhheeCcCcccC
Confidence            9998  677777776             899999999999987421  1  246788889988776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.1e-33  Score=287.39  Aligned_cols=352  Identities=23%  Similarity=0.354  Sum_probs=280.8

Q ss_pred             cCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCE
Q psy11648        137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQE  216 (584)
Q Consensus       137 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  216 (584)
                      .+++++.|+++++.+..++.                          +. .+++|++|++++|.++...+  +.++++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~--------------------------~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~   94 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG--------------------------VE-YLNNLTQINFSNNQLTDITP--LKNLTKLVD   94 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT--------------------------GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCccCcc--------------------------hh-hhcCCCEEECCCCccCCchh--hhccccCCE
Confidence            35689999999988776521                          22 67889999999988887765  888889999


Q ss_pred             EEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEc
Q psy11648        217 LSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINL  296 (584)
Q Consensus       217 L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  296 (584)
                      |++++|.+.+.   +. +..+++|++|++++|.+.  .++.  + ..+++|++|++++|.+...+  .+..+++|++|++
T Consensus        95 L~l~~n~l~~~---~~-~~~l~~L~~L~L~~n~l~--~~~~--~-~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l  163 (466)
T 1o6v_A           95 ILMNNNQIADI---TP-LANLTNLTGLTLFNNQIT--DIDP--L-KNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF  163 (466)
T ss_dssp             EECCSSCCCCC---GG-GTTCTTCCEEECCSSCCC--CCGG--G-TTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEE
T ss_pred             EECCCCccccC---hh-hcCCCCCCEEECCCCCCC--CChH--H-cCCCCCCEEECCCCccCCCh--hhccCCcccEeec
Confidence            99998888765   22 888889999999988875  4554  3 78889999999998888765  4788889999988


Q ss_pred             ccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCC
Q psy11648        297 EYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIK  376 (584)
Q Consensus       297 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  376 (584)
                      ++ .+..++.  +..  +++|+.|++++|.++...  .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.
T Consensus       164 ~~-~~~~~~~--~~~--l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          164 GN-QVTDLKP--LAN--LTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             EE-SCCCCGG--GTT--CTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             CC-cccCchh--hcc--CCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence            63 4444433  333  788999999998887753  36788889999999998887654  667888999999998888


Q ss_pred             ccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCCh
Q psy11648        377 YIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPV  456 (584)
Q Consensus       377 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  456 (584)
                      +.  ..+..+++|++|++++|.+.+..+     ...++.|+.|++++|.++..+.   ...+++|+.|++++|.++.++.
T Consensus       235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~  304 (466)
T 1o6v_A          235 DI--GTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP  304 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG
T ss_pred             cc--hhhhcCCCCCEEECCCCccccchh-----hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh
Confidence            75  457788899999999998877543     3356788999999998887665   4457899999999999888764


Q ss_pred             hhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCC
Q psy11648        457 NFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF  536 (584)
Q Consensus       457 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~  536 (584)
                        +..+ ++|++|++++|++.+..+  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|++.+..|  +..++
T Consensus       305 --~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~  375 (466)
T 1o6v_A          305 --ISNL-KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT  375 (466)
T ss_dssp             --GGGC-TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred             --hcCC-CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC
Confidence              6666 899999999999887765  67889999999999998876  468899999999999999998877  77899


Q ss_pred             CccEEEcCCCcCCccCcccc
Q psy11648        537 KLRILNISHNRLRSLPRDVF  556 (584)
Q Consensus       537 ~L~~L~L~~n~l~~lp~~l~  556 (584)
                      +|++|++++|+++.+|....
T Consensus       376 ~L~~L~l~~n~~~~~p~~~~  395 (466)
T 1o6v_A          376 RITQLGLNDQAWTNAPVNYK  395 (466)
T ss_dssp             TCCEEECCCEEEECCCBCCC
T ss_pred             CCCEEeccCCcccCCchhhc
Confidence            99999999999888776543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=291.52  Aligned_cols=322  Identities=23%  Similarity=0.285  Sum_probs=261.8

Q ss_pred             CcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCE
Q psy11648        190 LETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEW  269 (584)
Q Consensus       190 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~  269 (584)
                      -+.++.++..++.++.. +  .+++++|++++|.+.+.  .+..|..+++|++|++++|.+.  .++...+ ..+++|++
T Consensus        13 ~~~v~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~-~~l~~L~~   84 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEG-I--PTETRLLDLGKNRIKTL--NQDEFASFPHLEELELNENIVS--AVEPGAF-NNLFNLRT   84 (477)
T ss_dssp             TTEEECCSCCCSSCCSC-C--CTTCSEEECCSSCCCEE--CTTTTTTCTTCCEEECTTSCCC--EECTTTT-TTCTTCCE
T ss_pred             CCEEEeCCCCcCcCCCC-C--CCCCcEEECCCCccceE--CHhHccCCCCCCEEECCCCccC--EeChhhh-hCCccCCE
Confidence            35677777777665442 2  25788888888888777  6677888888888888888775  4433333 78888888


Q ss_pred             EEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCC
Q psy11648        270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYN  349 (584)
Q Consensus       270 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  349 (584)
                      |++++|.++.++...+..+++|++|++++|.+..++...+..  +++|++|++++|.++...+..+..+++|++|++++|
T Consensus        85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD--LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred             EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccc--cccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence            888888888887777888888888888888888776666655  888888888888888877777888889999999999


Q ss_pred             cCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccc
Q psy11648        350 LLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL  429 (584)
Q Consensus       350 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~  429 (584)
                      .+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|...+..+..                       
T Consensus       163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------------  219 (477)
T 2id5_A          163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-----------------------  219 (477)
T ss_dssp             CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT-----------------------
T ss_pred             cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc-----------------------
Confidence            888887777888899999999999888887778888889999998887643321110                       


Q ss_pred             cccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccC
Q psy11648        430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFI  509 (584)
Q Consensus       430 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  509 (584)
                         .  ....+|+.|++++|.++.++...+..+ ++|++|++++|.+.+.++..|..+++|++|++++|.+.+..+..|.
T Consensus       220 ---~--~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  293 (477)
T 2id5_A          220 ---C--LYGLNLTSLSITHCNLTAVPYLAVRHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR  293 (477)
T ss_dssp             ---T--TTTCCCSEEEEESSCCCSCCHHHHTTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred             ---c--ccCccccEEECcCCcccccCHHHhcCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence               0  013478999999999999887788888 9999999999999988888889999999999999999998888999


Q ss_pred             CCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648        510 GMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       510 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      .+++|++|++++|+++++++..|..+++|++|++++|.++.
T Consensus       294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            99999999999999999998888899999999999998773

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8e-33  Score=285.79  Aligned_cols=299  Identities=22%  Similarity=0.252  Sum_probs=199.3

Q ss_pred             cceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCcc
Q psy11648        239 KLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLK  318 (584)
Q Consensus       239 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~  318 (584)
                      +++.|++++|.+.  .++...+ ..+++|++|++++|.++...+.++.++++|++|++++|.++.++...+..  +++|+
T Consensus        33 ~l~~L~L~~n~l~--~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~  107 (477)
T 2id5_A           33 ETRLLDLGKNRIK--TLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG--LSNLT  107 (477)
T ss_dssp             TCSEEECCSSCCC--EECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT--CTTCC
T ss_pred             CCcEEECCCCccc--eECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC--CCCCC
Confidence            4555555555553  3332222 45555555555555555554445555555555555555555555444433  45555


Q ss_pred             EEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCC
Q psy11648        319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNK  398 (584)
Q Consensus       319 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  398 (584)
                      +|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|         
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---------  178 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL---------  178 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC---------
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC---------
Confidence            55555555554444444444555555555554444444444444444444444444444433334444444         


Q ss_pred             CCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCC-CCCChhhHHHhhCCCcEEEccCCccc
Q psy11648        399 LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI-QEVPVNFLQTFADSLRKLYLDFNEIK  477 (584)
Q Consensus       399 l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~~L~~L~l~~n~l~  477 (584)
                                        +.|++++|.+....... +..+++|+.|++++|.. ..++...+..  .+|++|++++|++.
T Consensus       179 ------------------~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~  237 (477)
T 2id5_A          179 ------------------IVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYG--LNLTSLSITHCNLT  237 (477)
T ss_dssp             ------------------CEEEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTT--CCCSEEEEESSCCC
T ss_pred             ------------------cEEeCCCCcCcEeChhh-cccCcccceeeCCCCccccccCcccccC--ccccEEECcCCccc
Confidence                              45555555444433322 23468899999998764 4566555543  69999999999999


Q ss_pred             ccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccc-c
Q psy11648        478 HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV-F  556 (584)
Q Consensus       478 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l-~  556 (584)
                      .++...+..+++|++|++++|.+....+..|..+++|++|++++|++.++.+..|..+++|++|++++|+++.+|... .
T Consensus       238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  317 (477)
T 2id5_A          238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH  317 (477)
T ss_dssp             SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred             ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence            888888999999999999999999988888999999999999999999999999999999999999999999988765 5


Q ss_pred             CCCCcceEECCCCCCC
Q psy11648        557 SNTIIEKLDISYNQDK  572 (584)
Q Consensus       557 ~~~~L~~l~l~~n~l~  572 (584)
                      .+++|+.|++++|+++
T Consensus       318 ~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          318 SVGNLETLILDSNPLA  333 (477)
T ss_dssp             CGGGCCEEECCSSCEE
T ss_pred             CCcccCEEEccCCCcc
Confidence            5699999999999987

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.4e-32  Score=273.27  Aligned_cols=308  Identities=20%  Similarity=0.322  Sum_probs=196.0

Q ss_pred             ccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCc
Q psy11648        238 EKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL  317 (584)
Q Consensus       238 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L  317 (584)
                      ++++.++++++.+.  .+|..++ ..+++|++|++++|.++..++..+..+++|++|++++|.++.+++..+..  +++|
T Consensus        45 ~~l~~l~l~~~~l~--~l~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L  119 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR--KLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN--VPLL  119 (390)
T ss_dssp             CCCSEEEEESCEES--EECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CTTC
T ss_pred             CCceEEEecCCchh--hCChhHh-cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC--CCCC
Confidence            34444444444442  3444433 44555555555555555444444555555555555555555444443333  4555


Q ss_pred             cEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCC
Q psy11648        318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN  397 (584)
Q Consensus       318 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  397 (584)
                      ++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..   +..+++|+.+++++|
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN  196 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSS
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccc
Confidence            55555555555444444455555555555555555554445555555555655555555441   334556666666666


Q ss_pred             CCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCccc
Q psy11648        398 KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK  477 (584)
Q Consensus       398 ~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~  477 (584)
                      .+.+..        ....++.+++++|.+...+...    .++|+.|++++|.++..  ..+..+ ++|++|++++|.+.
T Consensus       197 ~l~~~~--------~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~Ls~n~l~  261 (390)
T 3o6n_A          197 LLSTLA--------IPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELE  261 (390)
T ss_dssp             CCSEEE--------CCSSCSEEECCSSCCCEEECCC----CSSCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCC
T ss_pred             cccccC--------CCCcceEEECCCCeeeeccccc----cccccEEECCCCCCccc--HHHcCC-CCccEEECCCCcCC
Confidence            554321        2235566666666666554322    46788888888888775  356666 88999999999888


Q ss_pred             ccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccC
Q psy11648        478 HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS  557 (584)
Q Consensus       478 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~  557 (584)
                      +..+..+..+++|++|++++|.+++. +..+..+++|++|++++|++.++++. +..+++|++|++++|+++.+|  +..
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~--~~~  337 (390)
T 3o6n_A          262 KIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK--LST  337 (390)
T ss_dssp             EEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC--CCT
T ss_pred             CcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC--chh
Confidence            88778888889999999999988764 44567788999999999988876543 667889999999999988886  566


Q ss_pred             CCCcceEECCCCCCC
Q psy11648        558 NTIIEKLDISYNQDK  572 (584)
Q Consensus       558 ~~~L~~l~l~~n~l~  572 (584)
                      +++|+.|++++|+++
T Consensus       338 ~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          338 HHTLKNLTLSHNDWD  352 (390)
T ss_dssp             TCCCSEEECCSSCEE
T ss_pred             hccCCEEEcCCCCcc
Confidence            789999999999876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-31  Score=264.68  Aligned_cols=307  Identities=23%  Similarity=0.296  Sum_probs=226.1

Q ss_pred             hcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccC
Q psy11648        208 FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYN  287 (584)
Q Consensus       208 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~  287 (584)
                      +..+++|++|+++++.+...    ..+..+++|++|++++|.+.  .++.  + ..+++|++|++++|.++..+  ++..
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~--~~~~--~-~~l~~L~~L~L~~n~i~~~~--~~~~  108 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQIT--DISP--L-SNLVKLTNLYIGTNKITDIS--ALQN  108 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCC--CCGG--G-TTCTTCCEEECCSSCCCCCG--GGTT
T ss_pred             chhcccccEEEEeCCccccc----hhhhhcCCccEEEccCCccc--cchh--h-hcCCcCCEEEccCCcccCch--HHcC
Confidence            55788899999999887654    24777888888888888775  5555  3 68888888888888887764  5788


Q ss_pred             CCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCE
Q psy11648        288 LTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN  367 (584)
Q Consensus       288 l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  367 (584)
                      +++|++|++++|.+..++.  +..  +++|+.|++++|......+ .+..++.|++|++++|.+.+..+  +..+++|+.
T Consensus       109 l~~L~~L~l~~n~i~~~~~--~~~--l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          109 LTNLRELYLNEDNISDISP--LAN--LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS  181 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG--GTT--CTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred             CCcCCEEECcCCcccCchh--hcc--CCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence            8888888888888776655  232  7777777777775444332 26667777777777776665533  556666666


Q ss_pred             EeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEcc
Q psy11648        368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS  447 (584)
Q Consensus       368 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  447 (584)
                      |++++|.+.+..+  +..+++|+.+++++|.+.+..                           .   ...+++|++|+++
T Consensus       182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---------------------------~---~~~~~~L~~L~l~  229 (347)
T 4fmz_A          182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT---------------------------P---VANMTRLNSLKIG  229 (347)
T ss_dssp             EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---------------------------G---GGGCTTCCEEECC
T ss_pred             EEccCCccccccc--ccCCCccceeecccCCCCCCc---------------------------h---hhcCCcCCEEEcc
Confidence            6666666665422  555666666666666555432                           2   2235778888888


Q ss_pred             CCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCc
Q psy11648        448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISML  527 (584)
Q Consensus       448 ~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  527 (584)
                      +|.++.++.  +..+ ++|++|++++|.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|++++.
T Consensus       230 ~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~  302 (347)
T 4fmz_A          230 NNKITDLSP--LANL-SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE  302 (347)
T ss_dssp             SSCCCCCGG--GTTC-TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG
T ss_pred             CCccCCCcc--hhcC-CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc
Confidence            888877764  6666 8888888888888765  3577888899999999988775  4578889999999999999888


Q ss_pred             CcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        528 TGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       528 ~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                      .+..+..+++|++|++++|+++.++. +..+++|+.|++++|+++
T Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          303 DMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             ChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence            88888889999999999999998776 777899999999999886

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.1e-31  Score=268.42  Aligned_cols=342  Identities=18%  Similarity=0.194  Sum_probs=244.6

Q ss_pred             ccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhh
Q psy11648        179 QVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY  258 (584)
Q Consensus       179 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~  258 (584)
                      .+..+. .+++|++|+++++.+++.+  .+..+++|++|++++|.+.+.   +  +..+++|++|++++|.+.  .++  
T Consensus        34 ~~~~~~-~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~--~~~--  101 (457)
T 3bz5_A           34 DTISEE-QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLT--NLD--  101 (457)
T ss_dssp             SEEEHH-HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCS--CCC--
T ss_pred             cccChh-HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCc--eee--
Confidence            344555 7899999999999998763  588999999999999988765   2  788899999999999886  444  


Q ss_pred             HhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCC
Q psy11648        259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNL  338 (584)
Q Consensus       259 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  338 (584)
                       + +.+++|++|++++|.+++++   +..+++|++|++++|+++.++   +..  +++|+.|++++|...+..  .+..+
T Consensus       102 -~-~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~--l~~L~~L~l~~n~~~~~~--~~~~l  169 (457)
T 3bz5_A          102 -V-TPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSH--NTQLTELDCHLNKKITKL--DVTPQ  169 (457)
T ss_dssp             -C-TTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTT--CTTCCEEECTTCSCCCCC--CCTTC
T ss_pred             -c-CCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---ccc--CCcCCEEECCCCCccccc--ccccC
Confidence             3 78999999999999988863   788899999999999988764   222  889999999998544332  46788


Q ss_pred             CCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCce
Q psy11648        339 KELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN  418 (584)
Q Consensus       339 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~  418 (584)
                      ++|+.|++++|.++++.   +..+++|+.|++++|.+++.   .+..+++|++|++++|.+++++      ...++.++.
T Consensus       170 ~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip------~~~l~~L~~  237 (457)
T 3bz5_A          170 TQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID------VTPLTQLTY  237 (457)
T ss_dssp             TTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC------CTTCTTCSE
T ss_pred             CcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC------ccccCCCCE
Confidence            89999999999888863   67788999999999988876   3778899999999999988754      224567888


Q ss_pred             EECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCc
Q psy11648        419 LNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN  498 (584)
Q Consensus       419 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  498 (584)
                      +++++|+++..+.    ..+++|+.|+++.+.+.               .|++++|.+.+..+  ++.+++|+.|++++|
T Consensus       238 L~l~~N~l~~~~~----~~l~~L~~L~l~~n~L~---------------~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          238 FDCSVNPLTELDV----STLSKLTTLHCIQTDLL---------------EIDLTHNTQLIYFQ--AEGCRKIKELDVTHN  296 (457)
T ss_dssp             EECCSSCCSCCCC----TTCTTCCEEECTTCCCS---------------CCCCTTCTTCCEEE--CTTCTTCCCCCCTTC
T ss_pred             EEeeCCcCCCcCH----HHCCCCCEEeccCCCCC---------------EEECCCCccCCccc--ccccccCCEEECCCC
Confidence            8888888887653    23567777776655433               33344443322211  234455555555555


Q ss_pred             cccccccc--------ccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc-------------C
Q psy11648        499 NIAVVVKR--------TFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF-------------S  557 (584)
Q Consensus       499 ~~~~~~~~--------~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~-------------~  557 (584)
                      ...+.+|.        .+..+++|++|++++|++++++   +..+++|+.|++++|++++++. +.             .
T Consensus       297 ~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~l~~-L~~L~l~~n~l~g~~~  372 (457)
T 3bz5_A          297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQ  372 (457)
T ss_dssp             TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCBCTT-GGGSSGGGTSEEEEEE
T ss_pred             cccceeccCCCcceEechhhcccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCCccc-cccccccCCcEEecce
Confidence            43332221        1344566666666666666642   5566666666666666665431 11             2


Q ss_pred             CCCcceEECCCCCCC-CCCCCCCCC
Q psy11648        558 NTIIEKLDISYNQDK-IRPGRESNP  581 (584)
Q Consensus       558 ~~~L~~l~l~~n~l~-~~p~~~~~~  581 (584)
                      +..|+.+++++|.++ .+|..++..
T Consensus       373 ~~~l~~l~l~~N~l~g~ip~~~~~~  397 (457)
T 3bz5_A          373 TITMPKETLTNNSLTIAVSPDLLDQ  397 (457)
T ss_dssp             EEECCCBCCBTTBEEEECCTTCBCT
T ss_pred             eeecCccccccCcEEEEcChhHhcc
Confidence            356788899999999 899887654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.3e-31  Score=261.12  Aligned_cols=305  Identities=23%  Similarity=0.326  Sum_probs=250.6

Q ss_pred             hccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648        186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN  265 (584)
Q Consensus       186 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~  265 (584)
                      .+++|++|+++++.+....  .+..+++|++|++++|.+.+.   +. +..+++|++|++++|.+.  .++.  + ..++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~---~~-~~~l~~L~~L~L~~n~i~--~~~~--~-~~l~  110 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDI---SP-LSNLVKLTNLYIGTNKIT--DISA--L-QNLT  110 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCC--CCGG--G-TTCT
T ss_pred             hcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccc---hh-hhcCCcCCEEEccCCccc--CchH--H-cCCC
Confidence            7899999999999998764  388999999999999998765   33 889999999999999886  5653  3 7999


Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648        266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT  345 (584)
Q Consensus       266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  345 (584)
                      +|++|++++|.++..++  +..+++|++|++++|........ +..  +++|+.|++++|.+....+  +..+++|++|+
T Consensus       111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~--l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~  183 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSN--MTGLNYLTVTESKVKDVTP--IANLTDLYSLS  183 (347)
T ss_dssp             TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTT--CTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred             cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhh--CCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence            99999999999998765  88999999999999955433333 333  8999999999999987654  78899999999


Q ss_pred             ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648        346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY  425 (584)
Q Consensus       346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~  425 (584)
                      +++|.+.+..+  +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+++.+.  +.                 
T Consensus       184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~-----------------  240 (347)
T 4fmz_A          184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA-----------------  240 (347)
T ss_dssp             CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT-----------------
T ss_pred             ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh-----------------
Confidence            99999987754  7889999999999999988743  7889999999999998876543  11                 


Q ss_pred             cccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc
Q psy11648        426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK  505 (584)
Q Consensus       426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  505 (584)
                                 .+++|++|++++|.++.++  .+..+ ++|++|++++|++.+.  ..+..+++|++|++++|.+.+..+
T Consensus       241 -----------~l~~L~~L~l~~n~l~~~~--~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~  304 (347)
T 4fmz_A          241 -----------NLSQLTWLEIGTNQISDIN--AVKDL-TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM  304 (347)
T ss_dssp             -----------TCTTCCEEECCSSCCCCCG--GGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred             -----------cCCCCCEEECCCCccCCCh--hHhcC-CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh
Confidence                       2467777777777777653  35565 7888888888888776  346778889999999998888888


Q ss_pred             cccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      ..+..+++|++|++++|+++++++  +..+++|++|++++|.|+
T Consensus       305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            888889999999999999888876  677889999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-31  Score=267.34  Aligned_cols=298  Identities=22%  Similarity=0.276  Sum_probs=265.2

Q ss_pred             cCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCc
Q psy11648        263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELN  342 (584)
Q Consensus       263 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  342 (584)
                      .++++++++++++.++.++...+..+++|++|++++|.++.++...+..  +++|++|++++|.++...+..+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC--CCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            5689999999999999998877899999999999999999988877766  99999999999999999888899999999


Q ss_pred             EEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECC
Q psy11648        343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS  422 (584)
Q Consensus       343 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~  422 (584)
                      +|++++|.+..+.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.+..      ..+.++.++++
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~l~~L~~L~l~  194 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS------LIPSLFHANVS  194 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGG------GCTTCSEEECC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccc------cccccceeecc
Confidence            999999999988777788999999999999999998888899999999999999999887533      34578999999


Q ss_pred             CCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccc
Q psy11648        423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV  502 (584)
Q Consensus       423 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  502 (584)
                      +|.++.++.      .++++.|++++|.+..++...   . ++|++|++++|.+.+.  ..+..+++|++|++++|.+.+
T Consensus       195 ~n~l~~~~~------~~~L~~L~l~~n~l~~~~~~~---~-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~  262 (390)
T 3o6n_A          195 YNLLSTLAI------PIAVEELDASHNSINVVRGPV---N-VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK  262 (390)
T ss_dssp             SSCCSEEEC------CSSCSEEECCSSCCCEEECCC---C-SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred             cccccccCC------CCcceEEECCCCeeeeccccc---c-ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence            998886543      468999999999998776432   2 8999999999999876  467889999999999999999


Q ss_pred             ccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCC
Q psy11648        503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNP  581 (584)
Q Consensus       503 ~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~  581 (584)
                      ..+..|..+++|++|++++|++++++. .+..+++|++|++++|+++.+|..+..+++|+.|++++|+++.+|...+..
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  340 (390)
T 3o6n_A          263 IMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT  340 (390)
T ss_dssp             EESGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCC
T ss_pred             cChhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhcc
Confidence            989999999999999999999998754 456789999999999999999999888999999999999999888655543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=4.8e-31  Score=279.31  Aligned_cols=308  Identities=20%  Similarity=0.322  Sum_probs=204.5

Q ss_pred             ccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCc
Q psy11648        238 EKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRL  317 (584)
Q Consensus       238 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L  317 (584)
                      ++++.++++++.+.  .+|..++ ..+++|++|++++|.+++.++..+..+++|++|++++|.++.+++..+..  +++|
T Consensus        51 ~~l~~l~l~~~~l~--~lp~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L  125 (597)
T 3oja_B           51 NNQKIVTFKNSTMR--KLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN--VPLL  125 (597)
T ss_dssp             CCCSEEEESSCEES--EECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CTTC
T ss_pred             CCceEEEeeCCCCC--CcCHHHH-ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC--CCCC
Confidence            34444444444442  4444444 45555555555555555555445555555555555555555555544443  5555


Q ss_pred             cEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCC
Q psy11648        318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDN  397 (584)
Q Consensus       318 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  397 (584)
                      ++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..   +..+++|+.+++++|
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN  202 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence            55555555555554444555566666666666665555555555666666666666655542   334566666666666


Q ss_pred             CCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCccc
Q psy11648        398 KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK  477 (584)
Q Consensus       398 ~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~  477 (584)
                      .+.+..        ....++.+++++|.+..++...    .++|+.|++++|.++..  ..+..+ ++|+.|++++|.+.
T Consensus       203 ~l~~l~--------~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~--~~l~~l-~~L~~L~Ls~N~l~  267 (597)
T 3oja_B          203 LLSTLA--------IPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELE  267 (597)
T ss_dssp             CCSEEE--------CCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCC
T ss_pred             cccccc--------CCchhheeeccCCccccccccc----CCCCCEEECCCCCCCCC--hhhccC-CCCCEEECCCCccC
Confidence            554321        2235666667666666555433    36788999999888775  456666 89999999999998


Q ss_pred             ccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccC
Q psy11648        478 HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS  557 (584)
Q Consensus       478 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~  557 (584)
                      +..+..|..+++|++|++++|.+.+. +..+..+++|+.|++++|.+..+++ .+..+++|++|++++|.++.+|  +..
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~~--~~~  343 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLK--LST  343 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCCC--CCT
T ss_pred             CCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCcC--hhh
Confidence            88888888999999999999998875 5566778999999999999987654 4677889999999999998886  566


Q ss_pred             CCCcceEECCCCCCC
Q psy11648        558 NTIIEKLDISYNQDK  572 (584)
Q Consensus       558 ~~~L~~l~l~~n~l~  572 (584)
                      +++|+.|++++|+++
T Consensus       344 ~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          344 HHTLKNLTLSHNDWD  358 (597)
T ss_dssp             TCCCSEEECCSSCEE
T ss_pred             cCCCCEEEeeCCCCC
Confidence            789999999999876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.5e-30  Score=275.41  Aligned_cols=298  Identities=22%  Similarity=0.281  Sum_probs=266.3

Q ss_pred             cCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCc
Q psy11648        263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELN  342 (584)
Q Consensus       263 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  342 (584)
                      .+.+++.++++++.++.+++..+..+++|++|++++|.++.++...+..  +++|+.|++++|.++...+..+..+++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC--CCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            4678999999999999999888899999999999999999988877766  99999999999999999888899999999


Q ss_pred             EEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECC
Q psy11648        343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS  422 (584)
Q Consensus       343 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~  422 (584)
                      +|++++|.+.++.+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.+..      ..+.++.++++
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~l~~L~~L~l~  200 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS------LIPSLFHANVS  200 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG------GCTTCSEEECC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh------hhhhhhhhhcc
Confidence            999999999988777789999999999999999999888899999999999999999887543      34577999999


Q ss_pred             CCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccc
Q psy11648        423 NNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV  502 (584)
Q Consensus       423 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  502 (584)
                      +|.+..++.      +++|+.|++++|.++.++...    +++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+
T Consensus       201 ~n~l~~l~~------~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          201 YNLLSTLAI------PIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK  268 (597)
T ss_dssp             SSCCSEEEC------CTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred             cCccccccC------CchhheeeccCCccccccccc----CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCC
Confidence            999886543      578999999999998776432    27899999999999874  568889999999999999999


Q ss_pred             ccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCC
Q psy11648        503 VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNP  581 (584)
Q Consensus       503 ~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~  581 (584)
                      ..|..|..+++|+.|++++|++++++ ..+..+++|++|++++|.++.+|..+..+++|+.|++++|+++.+|...+..
T Consensus       269 ~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  346 (597)
T 3oja_B          269 IMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT  346 (597)
T ss_dssp             EESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCC
T ss_pred             CCHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCC
Confidence            99999999999999999999999874 4456799999999999999999999988999999999999999888665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=2.3e-29  Score=256.30  Aligned_cols=313  Identities=20%  Similarity=0.206  Sum_probs=249.6

Q ss_pred             hhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCcccccccccc
Q psy11648        205 GNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYS  284 (584)
Q Consensus       205 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  284 (584)
                      +..++++++|++|++++|.+.+.   + .+..+++|++|++++|.+.  .++   + ..+++|++|++++|.+++.+   
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls~n~l~--~~~---~-~~l~~L~~L~Ls~N~l~~~~---  101 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDM---T-GIEKLTGLTKLICTSNNIT--TLD---L-SQNTNLTYLACDSNKLTNLD---  101 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCC---T-TGGGCTTCSEEECCSSCCS--CCC---C-TTCTTCSEEECCSSCCSCCC---
T ss_pred             ccChhHcCCCCEEEccCCCcccC---h-hhcccCCCCEEEccCCcCC--eEc---c-ccCCCCCEEECcCCCCceee---
Confidence            34577899999999999988765   3 6888999999999999986  454   3 78999999999999998863   


Q ss_pred             ccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcC
Q psy11648        285 LYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNN  364 (584)
Q Consensus       285 l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  364 (584)
                      +..+++|++|++++|+++.++   +..  +++|++|++++|.+++.   .+..+++|++|++++|...+..  .+..+++
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~---~~~--l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~  171 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLD---VSQ--NPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ  171 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCC---CTT--CTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred             cCCCCcCCEEECCCCcCCeec---CCC--CCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence            788999999999999988874   333  89999999999998885   3778899999999999544332  4677889


Q ss_pred             CCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEE
Q psy11648        365 MLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSL  444 (584)
Q Consensus       365 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L  444 (584)
                      |+.|++++|.++++ +  +..+++|+.|++++|.+++.+      +..++.++.+++++|++++++    ...+++|+.|
T Consensus       172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~------l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L  238 (457)
T 3bz5_A          172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLD------LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYF  238 (457)
T ss_dssp             CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCC------CTTCTTCSEEECCSSCCSCCC----CTTCTTCSEE
T ss_pred             CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeec------cccCCCCCEEECcCCcccccC----ccccCCCCEE
Confidence            99999999998886 3  778889999999999888763      234567788888888877754    3346778888


Q ss_pred             EccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCC
Q psy11648        445 DLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI  524 (584)
Q Consensus       445 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i  524 (584)
                      ++++|.++.++.   ..+ ++|+.|+++++              +|+.+++++|.+.+.+|  ++.+++|+.|++++|..
T Consensus       239 ~l~~N~l~~~~~---~~l-~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          239 DCSVNPLTELDV---STL-SKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             ECCSSCCSCCCC---TTC-TTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred             EeeCCcCCCcCH---HHC-CCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence            888887777652   334 67777776654              56788899998777766  57899999999999975


Q ss_pred             CCcCcc--------cccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCC
Q psy11648        525 SMLTGE--------QFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRP  575 (584)
Q Consensus       525 ~~~~~~--------~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p  575 (584)
                      .+..|.        .+..+++|++|++++|++++++  +..+++|+.|++++|+++.+|
T Consensus       299 l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~  355 (457)
T 3bz5_A          299 LYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS  355 (457)
T ss_dssp             CCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT
T ss_pred             cceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc
Confidence            543332        3567899999999999999985  888999999999999999765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=7.3e-29  Score=243.14  Aligned_cols=287  Identities=20%  Similarity=0.289  Sum_probs=203.0

Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648        266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT  345 (584)
Q Consensus       266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  345 (584)
                      .++.++++++.++.++. .+  .+++++|++++|.++.++...+..  +++|++|++++|.++...+..+..+++|++|+
T Consensus        34 ~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKG--LQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhC--CCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            46666666666665543 22  246666777766666665544444  66677777777766666666666677777777


Q ss_pred             ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCC--CChhhhcccccCCCCceEECCC
Q psy11648        346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKD--FNLNVFSNITSKQTPMNLNLSN  423 (584)
Q Consensus       346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~~~~l~~L~l~~  423 (584)
                      +++|.+..+....+   ++|++|++++|.+....+..+..+++|++|++++|.++.  ..+..+...    .++.+++++
T Consensus       109 L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l----~L~~L~l~~  181 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL----KLNYLRISE  181 (332)
T ss_dssp             CCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC----CCSCCBCCS
T ss_pred             CCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC----ccCEEECcC
Confidence            77776664432221   567777777777776655666777777777777777653  333333222    667777777


Q ss_pred             CccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccc
Q psy11648        424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV  503 (584)
Q Consensus       424 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  503 (584)
                      |.++.++...    .++|++|++++|.++.++...+..+ ++|++|++++|++.+.++..+..+++|++|++++|.+. .
T Consensus       182 n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  255 (332)
T 2ft3_A          182 AKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R  255 (332)
T ss_dssp             SBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred             CCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence            7777655433    2688889999998888877778777 89999999999998888778888999999999999888 5


Q ss_pred             cccccCCCCCccEEECCCCCCCCcCcccccCC------CCccEEEcCCCcCC--ccC-ccccCCCCcceEECCCCC
Q psy11648        504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS------FKLRILNISHNRLR--SLP-RDVFSNTIIEKLDISYNQ  570 (584)
Q Consensus       504 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~------~~L~~L~L~~n~l~--~lp-~~l~~~~~L~~l~l~~n~  570 (584)
                      +|..+..+++|++|++++|+++++++..|...      +.|+.|++++|.+.  .++ ..+..+++|+.+++++|.
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            56678889999999999999998888777653      67899999999887  444 445556899999998875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.8e-28  Score=240.19  Aligned_cols=267  Identities=24%  Similarity=0.328  Sum_probs=165.4

Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648        266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT  345 (584)
Q Consensus       266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  345 (584)
                      .+++|++++|.+++.++..+..+++|++|++++|.++.+.+..+..  +++|++|++++|.++......   .++|++|+
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~l~~~~---~~~L~~L~  127 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP--LVKLERLYLSKNQLKELPEKM---PKTLQELR  127 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT--CTTCCEEECCSSCCSBCCSSC---CTTCCEEE
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC--CCCCCEEECCCCcCCccChhh---cccccEEE
Confidence            4444444444444444434444444444444444444443333322  444444444444444332211   14555566


Q ss_pred             ccCCcCCCcChhhhccCcCCCEEeccCCCCCc--cCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC
Q psy11648        346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY--IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN  423 (584)
Q Consensus       346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~  423 (584)
                      +++|.+.+..+..+..+++|+.|++++|.+..  ..+..+..+++|++|++++|.++..+.                   
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-------------------  188 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-------------------  188 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-------------------
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-------------------
Confidence            66665555555555556666666666665542  334455566666666666666554321                   


Q ss_pred             CccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccc
Q psy11648        424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV  503 (584)
Q Consensus       424 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  503 (584)
                              ..    .++|++|++++|.++.+++..+..+ ++|++|++++|.+.+.++..+..+++|++|++++|.+. .
T Consensus       189 --------~~----~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  254 (330)
T 1xku_A          189 --------GL----PPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K  254 (330)
T ss_dssp             --------SC----CTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S
T ss_pred             --------cc----cccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c
Confidence                    11    2567778888877777766677777 88888888888888777777788888888888888887 4


Q ss_pred             cccccCCCCCccEEECCCCCCCCcCcccccC------CCCccEEEcCCCcCCc--cC-ccccCCCCcceEECCCCC
Q psy11648        504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYF------SFKLRILNISHNRLRS--LP-RDVFSNTIIEKLDISYNQ  570 (584)
Q Consensus       504 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~------~~~L~~L~L~~n~l~~--lp-~~l~~~~~L~~l~l~~n~  570 (584)
                      +|..+..+++|++|++++|+++++++..|+.      .+.|+.|++++|.++.  ++ ..+..+++++.+++++|+
T Consensus       255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            5667888888889999988888888777754      3678889999998773  44 344445889999998884

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=2.6e-31  Score=273.60  Aligned_cols=390  Identities=17%  Similarity=0.154  Sum_probs=200.4

Q ss_pred             cceeeEEEecCccccccc-ccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecc
Q psy11648         69 ACYDLTLKITNTQIEELP-SGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLR  147 (584)
Q Consensus        69 ~~L~~~L~ls~n~i~~l~-~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~  147 (584)
                      ++|+ +||+++|++...+ ..++..+.+|+  +|++++|.+++.....+               +..+..+++|++|+++
T Consensus         3 ~~l~-~L~Ls~~~l~~~~~~~~~~~~~~L~--~L~L~~~~l~~~~~~~l---------------~~~l~~~~~L~~L~Ls   64 (461)
T 1z7x_W            3 LDIQ-SLDIQCEELSDARWAELLPLLQQCQ--VVRLDDCGLTEARCKDI---------------SSALRVNPALAELNLR   64 (461)
T ss_dssp             EEEE-EEEEESCCCCHHHHHHHHHHHTTCS--EEEEESSCCCHHHHHHH---------------HHHHHTCTTCCEEECT
T ss_pred             ccce-ehhhhhcccCchhHHHHHhhcCCcc--EEEccCCCCCHHHHHHH---------------HHHHHhCCCcCEEeCC
Confidence            4577 7788777776443 33355666677  88888777665433322               3345666778888888


Q ss_pred             ccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhcc----CCcEEEcCCCcccc----cchhhhcCCCCCCEEEc
Q psy11648        148 CNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLS----NLETLLLRCNKITD----LNGNLFRHLYNLQELSL  219 (584)
Q Consensus       148 ~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l  219 (584)
                      +|.+.+.....                        +...++    +|++|++++|.++.    ..+..+..+++|++|++
T Consensus        65 ~n~l~~~~~~~------------------------l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L  120 (461)
T 1z7x_W           65 SNELGDVGVHC------------------------VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL  120 (461)
T ss_dssp             TCCCHHHHHHH------------------------HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred             CCcCChHHHHH------------------------HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEEC
Confidence            87766543221                        111233    68888888877764    33556777788888888


Q ss_pred             CCCccceeecCCcccc-----ccccceEEeecccccCCC---CchhhHhhhcCCCCCEEEccCcccccccccccc-----
Q psy11648        220 SFNKLQIIELNSNVFD-----VFEKLQLLEISFSLFNSN---EFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY-----  286 (584)
Q Consensus       220 ~~~~l~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~---~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-----  286 (584)
                      ++|.+.+.  ....+.     ..++|++|++++|.+...   .++..+  ..+++|++|++++|.++......+.     
T Consensus       121 s~n~i~~~--~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  196 (461)
T 1z7x_W          121 SDNLLGDA--GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL--RAKPDFKELTVSNNDINEAGVRVLCQGLKD  196 (461)
T ss_dssp             CSSBCHHH--HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH--HHCTTCCEEECCSSBCHHHHHHHHHHHHHH
T ss_pred             CCCcCchH--HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH--hhCCCCCEEECcCCCcchHHHHHHHHHHhc
Confidence            88776543  111111     134567777776665411   122222  4566777777777766543322222     


Q ss_pred             CCCCCcEEEcccCCCcccc----cccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccC
Q psy11648        287 NLTSLNYINLEYNKISKIH----NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNL  362 (584)
Q Consensus       287 ~l~~L~~L~l~~~~l~~i~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  362 (584)
                      ..++|++|++++|.++..+    ...+..  +++|++|++++|.++......+                   .+..+..+
T Consensus       197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l-------------------~~~~~~~~  255 (461)
T 1z7x_W          197 SPCQLEALKLESCGVTSDNCRDLCGIVAS--KASLRELALGSNKLGDVGMAEL-------------------CPGLLHPS  255 (461)
T ss_dssp             SCCCCCEEECTTSCCBTTHHHHHHHHHHH--CTTCCEEECCSSBCHHHHHHHH-------------------HHHHTSTT
T ss_pred             CCCCceEEEccCCCCcHHHHHHHHHHHHh--CCCccEEeccCCcCChHHHHHH-------------------HHHHhcCC
Confidence            2446666666666655321    111111  4555555555554443211000                   01111123


Q ss_pred             cCCCEEeccCCCCCcc----CCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcccccccccccccc
Q psy11648        363 NNMLNIVLSFNQIKYI----YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAP  438 (584)
Q Consensus       363 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~  438 (584)
                      ++|+.|++++|.+++.    .+..+..+++|++|++++|.+++.....+....                       ....
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-----------------------~~~~  312 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL-----------------------LEPG  312 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH-----------------------TSTT
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh-----------------------ccCC
Confidence            4444555554444432    123344455666666666655443332222110                       0001


Q ss_pred             CcccEEEccCCCCCCCCh----hhHHHhhCCCcEEEccCCcccccCccccC-----CCcccCeeeccCccccc----ccc
Q psy11648        439 IYIKSLDLSNNRIQEVPV----NFLQTFADSLRKLYLDFNEIKHLDATAFG-----NLDVLELLSLEHNNIAV----VVK  505 (584)
Q Consensus       439 ~~L~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~----~~~  505 (584)
                      ++|++|++++|.++....    ..+..+ ++|++|++++|.+.+..+..+.     ..++|++|++++|.+++    .++
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  391 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQN-RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  391 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHC-SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhC-CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence            345555555554443211    223333 5556666665555443222221     14566667776666664    445


Q ss_pred             cccCCCCCccEEECCCCCCCCcCccccc-----CCCCccEEEcCCCcCC
Q psy11648        506 RTFIGMPNLQIIDLSFNEISMLTGEQFY-----FSFKLRILNISHNRLR  549 (584)
Q Consensus       506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~-----~~~~L~~L~L~~n~l~  549 (584)
                      ..+..+++|++|++++|++++.....+.     ...+|++|.+.++.+.
T Consensus       392 ~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            5566667777777777766643222221     2345777777766555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.1e-31  Score=276.21  Aligned_cols=383  Identities=17%  Similarity=0.156  Sum_probs=237.4

Q ss_pred             cCCcEEEcCCCcccccch-hhhcCCCCCCEEEcCCCcccee--ecCCccccccccceEEeecccccCCCCchhhHhhhcC
Q psy11648        188 SNLETLLLRCNKITDLNG-NLFRHLYNLQELSLSFNKLQII--ELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNL  264 (584)
Q Consensus       188 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~  264 (584)
                      ++|++|+++++.++.... ..+..+++|++|++++|.+...  ...+..+..+++|++|++++|.+. +..+..++ ..+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~~~~~l~-~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-DVGVHCVL-QGL   80 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-HHHHHHHH-HTT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC-hHHHHHHH-HHH
Confidence            456666666666654332 2255666666666666665422  012344555566666766666654 22222222 334


Q ss_pred             C----CCCEEEccCccccc----cccccccCCCCCcEEEcccCCCcccccccccc---cccCCccEEEcCCCcccccc--
Q psy11648        265 N----TLEWLAMDNNNIKN----IRNYSLYNLTSLNYINLEYNKISKIHNNLFHF---NIHKRLKEIRLSNNYLELIE--  331 (584)
Q Consensus       265 ~----~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~---~~~~~L~~L~l~~~~~~~~~--  331 (584)
                      +    +|++|++++|.++.    ..+..+..+++|++|++++|.++......+..   ...++|++|++++|.++...  
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            4    57777777776663    22445666777777777777665322111110   00345777777777666532  


Q ss_pred             --cccccCCCCCcEEEccCCcCCCcChhhhc-----cCcCCCEEeccCCCCCcc----CCccCCCCCCCcEEecCCCCCC
Q psy11648        332 --SDTFYNLKELNTITLSYNLLKSIKTTSFK-----NLNNMLNIVLSFNQIKYI----YPNAFVNLPNLVKLDLQDNKLK  400 (584)
Q Consensus       332 --~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~  400 (584)
                        +..+..+++|++|++++|.+.+.....+.     ..++|+.|++++|.+++.    .+..+..+++|++|++++|.++
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence              33445567777777777776543333222     245777777777777653    2444556777777777777766


Q ss_pred             CCChhhhcc-c-ccCCCCceEECCCCcccccccc---ccccccCcccEEEccCCCCCCCChhhHHHh----hCCCcEEEc
Q psy11648        401 DFNLNVFSN-I-TSKQTPMNLNLSNNYITNLYEN---DKKQAPIYIKSLDLSNNRIQEVPVNFLQTF----ADSLRKLYL  471 (584)
Q Consensus       401 ~~~~~~~~~-~-~~~~~l~~L~l~~~~l~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~----~~~L~~L~l  471 (584)
                      +.....+.. . ...+.++.|++++|.++.....   .....+++|++|++++|.+++.....+...    .++|++|++
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  320 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  320 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence            543322221 1 1245777777777777653211   112346889999999998875443333322    158999999


Q ss_pred             cCCcccccC----ccccCCCcccCeeeccCcccccccccccC----C-CCCccEEECCCCCCCC----cCcccccCCCCc
Q psy11648        472 DFNEIKHLD----ATAFGNLDVLELLSLEHNNIAVVVKRTFI----G-MPNLQIIDLSFNEISM----LTGEQFYFSFKL  538 (584)
Q Consensus       472 ~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~----~-~~~L~~L~ls~n~i~~----~~~~~~~~~~~L  538 (584)
                      ++|.+++..    +..+..+++|++|++++|.+.+..+..+.    . +++|++|++++|++++    ..+..+..+++|
T Consensus       321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence            999987653    34566779999999999998875443332    2 7899999999999985    556677789999


Q ss_pred             cEEEcCCCcCCc-----cCcccc-CCCCcceEECCCCCCC
Q psy11648        539 RILNISHNRLRS-----LPRDVF-SNTIIEKLDISYNQDK  572 (584)
Q Consensus       539 ~~L~L~~n~l~~-----lp~~l~-~~~~L~~l~l~~n~l~  572 (584)
                      ++|++++|+++.     +...+. ...+|+.|.+.++.+.
T Consensus       401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            999999999883     121222 2357888888888775

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=7.4e-28  Score=235.87  Aligned_cols=268  Identities=22%  Similarity=0.317  Sum_probs=170.8

Q ss_pred             cceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCcc
Q psy11648        239 KLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLK  318 (584)
Q Consensus       239 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~  318 (584)
                      +++.|++++|.+.  .++...+ ..+++|++|++++|.+++..+..+..+++|++|++++|.++.++...     .++|+
T Consensus        53 ~l~~L~L~~n~i~--~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-----~~~L~  124 (330)
T 1xku_A           53 DTALLDLQNNKIT--EIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-----PKTLQ  124 (330)
T ss_dssp             TCCEEECCSSCCC--CBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-----CTTCC
T ss_pred             CCeEEECCCCcCC--EeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-----ccccc
Confidence            4444444444443  3333223 56666666666666666665556666667777777777666665543     35677


Q ss_pred             EEEcCCCcccccccccccCCCCCcEEEccCCcCCC--cChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCC
Q psy11648        319 EIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS--IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD  396 (584)
Q Consensus       319 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  396 (584)
                      +|++++|.++...+..+..+++|+.|++++|.+..  ..+..+..+++|+.|++++|.++.+. ..+  .++|++|++++
T Consensus       125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~--~~~L~~L~l~~  201 (330)
T 1xku_A          125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QGL--PPSLTELHLDG  201 (330)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SSC--CTTCSEEECTT
T ss_pred             EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC-ccc--cccCCEEECCC
Confidence            77777777776666666777777777777777653  44556777778888888888777653 322  26788888888


Q ss_pred             CCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcc
Q psy11648        397 NKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEI  476 (584)
Q Consensus       397 ~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l  476 (584)
                      |.+++..+..+..                            +++|++|++++|.++.++...+..+ ++|++|++++|++
T Consensus       202 n~l~~~~~~~~~~----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l  252 (330)
T 1xku_A          202 NKITKVDAASLKG----------------------------LNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKL  252 (330)
T ss_dssp             SCCCEECTGGGTT----------------------------CTTCCEEECCSSCCCEECTTTGGGS-TTCCEEECCSSCC
T ss_pred             CcCCccCHHHhcC----------------------------CCCCCEEECCCCcCceeChhhccCC-CCCCEEECCCCcC
Confidence            8777654443332                            3556666666666665555555555 6677777777766


Q ss_pred             cccCccccCCCcccCeeeccCcccccccccccCC------CCCccEEECCCCCCC--CcCcccccCCCCccEEEcCCCc
Q psy11648        477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIG------MPNLQIIDLSFNEIS--MLTGEQFYFSFKLRILNISHNR  547 (584)
Q Consensus       477 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~ls~n~i~--~~~~~~~~~~~~L~~L~L~~n~  547 (584)
                      ..++ ..+..+++|++|++++|.++...+..|..      .++++.+++++|.+.  .+.|..|..++.++.+++++|+
T Consensus       253 ~~lp-~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          253 VKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCC-TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccCC-hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            6443 34566677777777777776655555533      367888888888876  4667778888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=3.1e-28  Score=238.70  Aligned_cols=247  Identities=24%  Similarity=0.331  Sum_probs=133.7

Q ss_pred             hcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCC
Q psy11648        262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKEL  341 (584)
Q Consensus       262 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  341 (584)
                      ..+++|++|++++|.++...+.++..+++|++|++++|.++.++...     .++|++|++++|.++...+..+..+++|
T Consensus        75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-----CTTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-----cccCCEEECCCCccCccCHhHhCCCccC
Confidence            44555555555555555444444555555555555555554444432     2344444444444444433334444444


Q ss_pred             cEEEccCCcCCC--cChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceE
Q psy11648        342 NTITLSYNLLKS--IKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNL  419 (584)
Q Consensus       342 ~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L  419 (584)
                      +.|++++|.+..  ..+..+..+ +|+.+++++|.++++ |..+.  ++|++|++++|.+++..+..+            
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l------------  213 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDL------------  213 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSS------------
T ss_pred             CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHh------------
Confidence            444444444431  222333333 444444444444443 11111  344444444444443322221            


Q ss_pred             ECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcc
Q psy11648        420 NLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNN  499 (584)
Q Consensus       420 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  499 (584)
                                      ..+++|++|++++|.++.++...+..+ ++|++|++++|++..++. .+..+++|++|++++|.
T Consensus       214 ----------------~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          214 ----------------LRYSKLYRLGLGHNQIRMIENGSLSFL-PTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             ----------------TTCTTCSCCBCCSSCCCCCCTTGGGGC-TTCCEEECCSSCCCBCCT-TGGGCTTCCEEECCSSC
T ss_pred             ----------------cCCCCCCEEECCCCcCCcCChhHhhCC-CCCCEEECCCCcCeecCh-hhhcCccCCEEECCCCC
Confidence                            224566666777666666665566666 677777777777664433 46667777777777777


Q ss_pred             cccccccccCC------CCCccEEECCCCCCC--CcCcccccCCCCccEEEcCCCc
Q psy11648        500 IAVVVKRTFIG------MPNLQIIDLSFNEIS--MLTGEQFYFSFKLRILNISHNR  547 (584)
Q Consensus       500 ~~~~~~~~~~~------~~~L~~L~ls~n~i~--~~~~~~~~~~~~L~~L~L~~n~  547 (584)
                      ++...+..|..      .++|+.|++++|.+.  ++.+..|..+++|+.+++++|+
T Consensus       276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            77665555544      367888888888877  6777888888888888888874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=6.3e-29  Score=264.18  Aligned_cols=329  Identities=13%  Similarity=0.092  Sum_probs=163.5

Q ss_pred             hccCCcEEEcCCCccccc----chhhhcCCCCCCEEEcCCCcccee--ecCCccccccccceEEeecccccCCCCchhhH
Q psy11648        186 LLSNLETLLLRCNKITDL----NGNLFRHLYNLQELSLSFNKLQII--ELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI  259 (584)
Q Consensus       186 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~  259 (584)
                      .+++|++|++++|.+.+.    .+..+..+++|++|+++++.+.+.  ...+..+..+++|++|++++|.+.  .++..+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--~l~~~~  239 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL--ELVGFF  239 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG--GGHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH--HHHHHH
Confidence            567777777777765543    233445667777777777665422  012334455667777777776664  455443


Q ss_pred             hhhcCCCCCEEEccCcccc---ccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCccccccc-ccc
Q psy11648        260 LNKNLNTLEWLAMDNNNIK---NIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES-DTF  335 (584)
Q Consensus       260 ~~~~~~~L~~L~l~~~~l~---~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l  335 (584)
                        ..+++|++|+++.....   ......+..+++|+.++++++....++... ..  +++|++|++++|.++.... ..+
T Consensus       240 --~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~-~~--~~~L~~L~Ls~~~l~~~~~~~~~  314 (592)
T 3ogk_B          240 --KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF-PF--AAQIRKLDLLYALLETEDHCTLI  314 (592)
T ss_dssp             --HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG-GG--GGGCCEEEETTCCCCHHHHHHHH
T ss_pred             --hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH-hh--cCCCcEEecCCCcCCHHHHHHHH
Confidence              56677777777643211   111224555666777766665433443322 22  5666777776666543222 224


Q ss_pred             cCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC-----------CCCCccCC-ccCCCCCCCcEEecCCCCCCCCC
Q psy11648        336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF-----------NQIKYIYP-NAFVNLPNLVKLDLQDNKLKDFN  403 (584)
Q Consensus       336 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~  403 (584)
                      ..+++|++|+++++......+.....+++|++|++++           +.+++... .....+++|++|++..+.+++..
T Consensus       315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~  394 (592)
T 3ogk_B          315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES  394 (592)
T ss_dssp             TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred             HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence            5666666666662211112222234456666666662           23332211 11223566666666555444332


Q ss_pred             hhhhcccccCCCCceEECCCCccccccccccccccCcccEEEcc----CCCCCCCCh-----hhHHHhhCCCcEEEccCC
Q psy11648        404 LNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS----NNRIQEVPV-----NFLQTFADSLRKLYLDFN  474 (584)
Q Consensus       404 ~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~----~~~l~~~~~-----~~~~~~~~~L~~L~l~~n  474 (584)
                      ...+.                           ..+++|+.|+++    .+.+++.|.     ..+.++ ++|++|++++|
T Consensus       395 ~~~l~---------------------------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~-~~L~~L~L~~~  446 (592)
T 3ogk_B          395 LESIG---------------------------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC-KKLRRFAFYLR  446 (592)
T ss_dssp             HHHHH---------------------------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC-TTCCEEEEECC
T ss_pred             HHHHH---------------------------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC-CCCCEEEEecC
Confidence            22221                           124455555554    333443321     123334 55666666543


Q ss_pred             c--ccccCcccc-CCCcccCeeeccCcccccc-cccccCCCCCccEEECCCCCCCCc-CcccccCCCCccEEEcCCCcCC
Q psy11648        475 E--IKHLDATAF-GNLDVLELLSLEHNNIAVV-VKRTFIGMPNLQIIDLSFNEISML-TGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       475 ~--l~~~~~~~l-~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ls~n~i~~~-~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      .  +++.....+ ..+++|++|++++|.+++. .+..+..+++|++|++++|.+++. .+.....+++|++|++++|+++
T Consensus       447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             GGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             CCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            2  332221111 2355566666666655542 223345556666666666665432 1222234556666666666655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2.3e-27  Score=229.86  Aligned_cols=231  Identities=18%  Similarity=0.189  Sum_probs=155.4

Q ss_pred             cCCccEEEcCC-CcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEE
Q psy11648        314 HKRLKEIRLSN-NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL  392 (584)
Q Consensus       314 ~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  392 (584)
                      +++|++|++++ |.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            33333333332 33333333344445555555555555554444445555555555555555554445555555666666


Q ss_pred             ecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEcc
Q psy11648        393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLD  472 (584)
Q Consensus       393 ~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  472 (584)
                      ++++|.+++..+..+..+                           .++|++|++++|.++...+..+..+ + |++|+++
T Consensus       155 ~L~~N~l~~~~p~~l~~l---------------------------~~~L~~L~L~~N~l~~~~~~~~~~l-~-L~~L~Ls  205 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSF---------------------------SKLFTSMTISRNRLTGKIPPTFANL-N-LAFVDLS  205 (313)
T ss_dssp             ECCSSCCEEECCGGGGCC---------------------------CTTCCEEECCSSEEEEECCGGGGGC-C-CSEEECC
T ss_pred             ECcCCcccCcCCHHHhhh---------------------------hhcCcEEECcCCeeeccCChHHhCC-c-ccEEECc
Confidence            666655543322222211                           1367777777777663333556665 4 8899999


Q ss_pred             CCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC-cc
Q psy11648        473 FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR-SL  551 (584)
Q Consensus       473 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~l  551 (584)
                      +|.+.+..+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|+++ .+
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            9988888888888999999999999999877665 788899999999999999888888999999999999999998 57


Q ss_pred             CccccCCCCcceEECCCCCC-CCCC
Q psy11648        552 PRDVFSNTIIEKLDISYNQD-KIRP  575 (584)
Q Consensus       552 p~~l~~~~~L~~l~l~~n~l-~~~p  575 (584)
                      |.. ..+++|+.+++++|+. ...|
T Consensus       285 p~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          285 PQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CCC-ccccccChHHhcCCCCccCCC
Confidence            754 7789999999999984 4544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=3.2e-27  Score=228.79  Aligned_cols=253  Identities=21%  Similarity=0.258  Sum_probs=145.2

Q ss_pred             ccceEEeecccccCCC--CchhhHhhhcCCCCCEEEccC-ccccccccccccCCCCCcEEEcccCCCccccccccccccc
Q psy11648        238 EKLQLLEISFSLFNSN--EFPYYILNKNLNTLEWLAMDN-NNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIH  314 (584)
Q Consensus       238 ~~L~~L~l~~~~~~~~--~l~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~  314 (584)
                      .+++.|+++++.+. +  .+|..+  ..+++|++|++++ |.+.+..+..+..+++|++|++++|.++..          
T Consensus        50 ~~l~~L~L~~~~l~-~~~~~~~~l--~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~----------  116 (313)
T 1ogq_A           50 YRVNNLDLSGLNLP-KPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA----------  116 (313)
T ss_dssp             CCEEEEEEECCCCS-SCEECCGGG--GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE----------
T ss_pred             ceEEEEECCCCCcc-CCcccChhH--hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc----------
Confidence            35777777777765 4  456554  5677777777774 666655555666666666666666666532          


Q ss_pred             CCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCC-CCcEEe
Q psy11648        315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP-NLVKLD  393 (584)
Q Consensus       315 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~  393 (584)
                                      .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..++ .|++|+
T Consensus       117 ----------------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~  180 (313)
T 1ogq_A          117 ----------------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             ----------------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred             ----------------CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence                            233333444444444444444444444455555555555555555544455555554 566666


Q ss_pred             cCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccC
Q psy11648        394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDF  473 (584)
Q Consensus       394 l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~  473 (584)
                      +++|.+++..+..+...                            . |+.|++++|.++..++..+..+ ++|++|++++
T Consensus       181 L~~N~l~~~~~~~~~~l----------------------------~-L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~  230 (313)
T 1ogq_A          181 ISRNRLTGKIPPTFANL----------------------------N-LAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAK  230 (313)
T ss_dssp             CCSSEEEEECCGGGGGC----------------------------C-CSEEECCSSEEEECCGGGCCTT-SCCSEEECCS
T ss_pred             CcCCeeeccCChHHhCC----------------------------c-ccEEECcCCcccCcCCHHHhcC-CCCCEEECCC
Confidence            66665554333332221                            1 4444444444443333444444 5666666666


Q ss_pred             CcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCc-CCcc
Q psy11648        474 NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNR-LRSL  551 (584)
Q Consensus       474 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~-l~~l  551 (584)
                      |++.+..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++..|.. ..+++|+.+++++|. +.+.
T Consensus       231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            666544433 555667777777777776666666777777777777777776555553 556677777777774 4443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.4e-25  Score=228.55  Aligned_cols=245  Identities=21%  Similarity=0.337  Sum_probs=137.3

Q ss_pred             EEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC
Q psy11648        293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF  372 (584)
Q Consensus       293 ~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  372 (584)
                      .++.++..++.+|..+     .+.++.|++++|.++...+..+..+++|+.|++++|.+..+.+..|..+++|+.|++++
T Consensus        47 ~v~c~~~~l~~iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           47 KVICVRKNLREVPDGI-----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             EEECCSCCCSSCCSCC-----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             EEEeCCCCcCcCCCCC-----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            4444444444444432     23444445555544444444444555555555555555444444444555555555555


Q ss_pred             CCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc-cccccccccccccCcccEEEccCCCC
Q psy11648        373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY-ITNLYENDKKQAPIYIKSLDLSNNRI  451 (584)
Q Consensus       373 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~l  451 (584)
                      |.++.+.+..+..+++|++|++++|.+...+...|..   .+.|+.|++++|+ +..++ ...+..+++|++|++++|.+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~---l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR---IPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT---CTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhh---CcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcC
Confidence            5555444444455555555555555544433322222   1233333333321 11111 11223356777777777777


Q ss_pred             CCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCccc
Q psy11648        452 QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ  531 (584)
Q Consensus       452 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~  531 (584)
                      +.+|.  +..+ ++|++|++++|++.+..+..|.++++|++|++++|.+....+..|..+++|++|++++|+++++++..
T Consensus       198 ~~~~~--~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  274 (440)
T 3zyj_A          198 REIPN--LTPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL  274 (440)
T ss_dssp             SSCCC--CTTC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccccc--cCCC-cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence            76652  4445 67777777777777776667777777777777777777776667777777777777777777777777


Q ss_pred             ccCCCCccEEEcCCCcCC
Q psy11648        532 FYFSFKLRILNISHNRLR  549 (584)
Q Consensus       532 ~~~~~~L~~L~L~~n~l~  549 (584)
                      |..+++|++|++++|.+.
T Consensus       275 ~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          275 FTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TSSCTTCCEEECCSSCEE
T ss_pred             hccccCCCEEEcCCCCcc
Confidence            777777777777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.4e-28  Score=261.53  Aligned_cols=418  Identities=14%  Similarity=0.074  Sum_probs=272.0

Q ss_pred             hhhcCCccceeecccccc-ccc--cccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcC
Q psy11648        134 REKLLSNLETLLLRCNKI-TDL--NGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRH  210 (584)
Q Consensus       134 ~l~~~~~L~~L~l~~n~i-~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  210 (584)
                      .+..+++|++|+++++.. .+.  .+..+....             ......+...+++|++|+++++.+++.....+..
T Consensus        68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~-------------~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~  134 (592)
T 3ogk_B           68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYV-------------TPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAK  134 (592)
T ss_dssp             HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBC-------------HHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH
T ss_pred             HHHhCCCCeEEEecCCcchhhcccccccccccc-------------hHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHH
Confidence            456788999999988632 111  110110000             0001122336788888888888776654444544


Q ss_pred             -CCC-CCEEEcCCCccceeecCCccccccccceEEeecccccCCCC---chhhHhhhcCCCCCEEEccCcccccc----c
Q psy11648        211 -LYN-LQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNE---FPYYILNKNLNTLEWLAMDNNNIKNI----R  281 (584)
Q Consensus       211 -~~~-L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~~~L~~L~l~~~~l~~~----~  281 (584)
                       ++. |++|++++|..............+++|++|++++|.+.+..   ++...  ..+++|++|++++|.+++.    .
T Consensus       135 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~n~~~~~~~~~l  212 (592)
T 3ogk_B          135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA--QHNTSLEVLNFYMTEFAKISPKDL  212 (592)
T ss_dssp             HHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH--HHCCCCCEEECTTCCCSSCCHHHH
T ss_pred             hccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH--hcCCCccEEEeeccCCCccCHHHH
Confidence             344 88888887752111111223346788888888888765211   33232  6788888888888877622    2


Q ss_pred             cccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCccc---ccccccccCCCCCcEEEccCCcCCCcChhh
Q psy11648        282 NYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLE---LIESDTFYNLKELNTITLSYNLLKSIKTTS  358 (584)
Q Consensus       282 ~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  358 (584)
                      +..+..+++|++|++++|.+..++.. +..  +++|+.|+++.....   ......+..+++|+.+.++++... ..+..
T Consensus       213 ~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~  288 (592)
T 3ogk_B          213 ETIARNCRSLVSVKVGDFEILELVGF-FKA--AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPIL  288 (592)
T ss_dssp             HHHHHHCTTCCEEECSSCBGGGGHHH-HHH--CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGG
T ss_pred             HHHHhhCCCCcEEeccCccHHHHHHH-Hhh--hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHH
Confidence            23456678888888888887776643 333  788888888753222   122334667788888888775333 33556


Q ss_pred             hccCcCCCEEeccCCCCCccCC-ccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC-----------Ccc
Q psy11648        359 FKNLNNMLNIVLSFNQIKYIYP-NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN-----------NYI  426 (584)
Q Consensus       359 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~-----------~~l  426 (584)
                      +..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+.  ..++.|+.|++++           +.+
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~--~~~~~L~~L~L~~g~~~~~~~~~~~~~  365 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA--QYCKQLKRLRIERGADEQGMEDEEGLV  365 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHH--HHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHH--HhCCCCCEEEeecCccccccccccCcc
Confidence            6778889999998888664322 335678899999888 333332222221  2356788898883           455


Q ss_pred             ccccccccccccCcccEEEccCCCCCCCChhhHHH-hhCCCcEEEcc----CCcccccC-----ccccCCCcccCeeecc
Q psy11648        427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQT-FADSLRKLYLD----FNEIKHLD-----ATAFGNLDVLELLSLE  496 (584)
Q Consensus       427 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~~L~~L~l~----~n~l~~~~-----~~~l~~l~~L~~L~l~  496 (584)
                      ++.........+++|++|+++.+.++......+.. + ++|++|+++    .+.+++.+     +..+.++++|++|+++
T Consensus       366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~  444 (592)
T 3ogk_B          366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY  444 (592)
T ss_dssp             CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence            54333333345799999999888887543344444 5 899999997    45666532     2235678999999998


Q ss_pred             Ccc--ccccccccc-CCCCCccEEECCCCCCCCc-CcccccCCCCccEEEcCCCcCC--ccCccccCCCCcceEECCCCC
Q psy11648        497 HNN--IAVVVKRTF-IGMPNLQIIDLSFNEISML-TGEQFYFSFKLRILNISHNRLR--SLPRDVFSNTIIEKLDISYNQ  570 (584)
Q Consensus       497 ~n~--~~~~~~~~~-~~~~~L~~L~ls~n~i~~~-~~~~~~~~~~L~~L~L~~n~l~--~lp~~l~~~~~L~~l~l~~n~  570 (584)
                      +|.  +++.....+ ..+++|++|++++|++++. .+..+.++++|++|++++|.++  +++.....+++|+.|++++|+
T Consensus       445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            654  555443333 4589999999999998863 3344578999999999999987  356556678999999999999


Q ss_pred             CCCC
Q psy11648        571 DKIR  574 (584)
Q Consensus       571 l~~~  574 (584)
                      ++..
T Consensus       525 it~~  528 (592)
T 3ogk_B          525 ASMT  528 (592)
T ss_dssp             CCTT
T ss_pred             CCHH
Confidence            8844

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.3e-25  Score=229.77  Aligned_cols=245  Identities=22%  Similarity=0.332  Sum_probs=128.7

Q ss_pred             EEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC
Q psy11648        293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF  372 (584)
Q Consensus       293 ~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  372 (584)
                      .++.++..++.+|..+     .++++.|++++|.++...+..+..+++|+.|++++|.+.++.+..+..+++|+.|++++
T Consensus        58 ~v~c~~~~l~~iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGI-----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             EEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEECCCCcCccCCCC-----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            4444444444444332     23445555555555544444455555555555555555554444455555555555555


Q ss_pred             CCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCC-ccccccccccccccCcccEEEccCCCC
Q psy11648        373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN-YITNLYENDKKQAPIYIKSLDLSNNRI  451 (584)
Q Consensus       373 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~l  451 (584)
                      |.++...+..+..+++|++|++++|.+...+...|..   .+.|+.|++++| .+..++. ..+..+++|++|++++|.+
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR---VPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTT---CTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhc---CCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCcc
Confidence            5555544444555555555555555554433322221   122333333321 1111111 1122345666666666666


Q ss_pred             CCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCccc
Q psy11648        452 QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ  531 (584)
Q Consensus       452 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~  531 (584)
                      +.+|.  +..+ ++|++|++++|++.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|+++++++..
T Consensus       209 ~~~~~--~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          209 KDMPN--LTPL-VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             SSCCC--CTTC-TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred             ccccc--cccc-ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence            65542  3344 66666666666666666666666666666666666666665666666666666666666666666666


Q ss_pred             ccCCCCccEEEcCCCcCC
Q psy11648        532 FYFSFKLRILNISHNRLR  549 (584)
Q Consensus       532 ~~~~~~L~~L~L~~n~l~  549 (584)
                      |..+++|++|++++|.+.
T Consensus       286 ~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          286 FTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             STTCTTCCEEECCSSCEE
T ss_pred             hccccCCCEEEccCCCcC
Confidence            666666666666666544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.3e-26  Score=226.31  Aligned_cols=254  Identities=19%  Similarity=0.234  Sum_probs=141.8

Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648        266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT  345 (584)
Q Consensus       266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  345 (584)
                      +|++|++++|.++++++..+..+++|++|++++|.++.++...+..  +++|++|++++|.++...+..+..+++|++|+
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS--LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC--CCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            4444455444444444444444445555555554444443333332  44444444444444444333344445555555


Q ss_pred             ccCCcCCCcCh-hhhccCcCCCEEeccCC-CCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC
Q psy11648        346 LSYNLLKSIKT-TSFKNLNNMLNIVLSFN-QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN  423 (584)
Q Consensus       346 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~  423 (584)
                      +++|.+..+.. ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+.+..+..+                
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----------------  194 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL----------------  194 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT----------------
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH----------------
Confidence            55554444332 23444555555555554 2444434445555555555555555443322222                


Q ss_pred             CccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCcccc---CCCcccCeeeccCccc
Q psy11648        424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAF---GNLDVLELLSLEHNNI  500 (584)
Q Consensus       424 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~~  500 (584)
                                  ..+++|++|++++|.++.++...+..+ ++|++|++++|++.+.....+   .....++.++++++.+
T Consensus       195 ------------~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l  261 (353)
T 2z80_A          195 ------------KSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI  261 (353)
T ss_dssp             ------------TTCSEEEEEEEECSCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred             ------------hccccCCeecCCCCccccchhhhhhhc-ccccEEECCCCccccccccccccccccchhhccccccccc
Confidence                        224677777777777777665555555 777888888777766543322   2345566777777666


Q ss_pred             cc----ccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648        501 AV----VVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       501 ~~----~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      .+    .+|..+..+++|++|++++|+++.+++..|..+++|++|++++|.++.
T Consensus       262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            55    245567777888888888888887776666777888888888887764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.3e-26  Score=227.34  Aligned_cols=277  Identities=19%  Similarity=0.230  Sum_probs=206.1

Q ss_pred             cCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCc
Q psy11648        263 NLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELN  342 (584)
Q Consensus       263 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  342 (584)
                      .|+.....+.+++.++.++. .+  .++|++|++++|.++.++...+..  +++|++|++++|.++...+..+..+++|+
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISNSDLQR--CVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCHHHhcc--CCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            34455556777777776654 22  246777777777777776655554  77777777777777776666677777777


Q ss_pred             EEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCC-ccCCCCCCCcEEecCCCC-CCCCChhhhcccccCCCCceEE
Q psy11648        343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP-NAFVNLPNLVKLDLQDNK-LKDFNLNVFSNITSKQTPMNLN  420 (584)
Q Consensus       343 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~l~~L~  420 (584)
                      +|++++|.+++..+..+..+++|++|++++|.+..+.. ..+..+++|++|++++|. +....+..+             
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------------  170 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-------------  170 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-------------
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc-------------
Confidence            77777777776666556777777777777777776544 356667777777777663 443322222             


Q ss_pred             CCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccc
Q psy11648        421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI  500 (584)
Q Consensus       421 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  500 (584)
                                     ..+++|++|++++|.++.+.+..+..+ ++|++|++++|++...+...+..+++|++|++++|.+
T Consensus       171 ---------------~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          171 ---------------AGLTFLEELEIDASDLQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             ---------------TTCCEEEEEEEEETTCCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred             ---------------cCCCCCCEEECCCCCcCccCHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence                           235789999999999988766778888 9999999999999877766667789999999999999


Q ss_pred             cccccccc---CCCCCccEEECCCCCCCC----cCcccccCCCCccEEEcCCCcCCccCccc-cCCCCcceEECCCCCCC
Q psy11648        501 AVVVKRTF---IGMPNLQIIDLSFNEISM----LTGEQFYFSFKLRILNISHNRLRSLPRDV-FSNTIIEKLDISYNQDK  572 (584)
Q Consensus       501 ~~~~~~~~---~~~~~L~~L~ls~n~i~~----~~~~~~~~~~~L~~L~L~~n~l~~lp~~l-~~~~~L~~l~l~~n~l~  572 (584)
                      .+..+..+   ...+.++.++++++.+.+    ..|..+..+++|++|++++|+++.+|..+ ..+++|+.|++++|+++
T Consensus       235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            87654332   346788999999998875    23556788999999999999999999986 57899999999999998


Q ss_pred             C
Q psy11648        573 I  573 (584)
Q Consensus       573 ~  573 (584)
                      .
T Consensus       315 ~  315 (353)
T 2z80_A          315 C  315 (353)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.1e-26  Score=217.84  Aligned_cols=223  Identities=23%  Similarity=0.311  Sum_probs=116.9

Q ss_pred             EEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC
Q psy11648        293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF  372 (584)
Q Consensus       293 ~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  372 (584)
                      +++.+++.++.+|...     .++++.|++++|.++...+..+..+++|++|++++|.+.++.+..+..+++|+.|++++
T Consensus        15 ~~~c~~~~l~~ip~~~-----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGI-----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             EEECCSSCCSSCCTTC-----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEcCcCCcccCCcCC-----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            4444444444444322     34455555555555544444445555555555555555554444555555555555555


Q ss_pred             CC-CCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCC
Q psy11648        373 NQ-IKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRI  451 (584)
Q Consensus       373 ~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l  451 (584)
                      |. +....+..+..+++|++|++++|.+++..+..+..                            +++|++|++++|.+
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------l~~L~~L~l~~n~l  141 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG----------------------------LAALQYLYLQDNAL  141 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----------------------------CTTCCEEECCSSCC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC----------------------------CcCCCEEECCCCcc
Confidence            54 44444455555555555555555555443322221                            24455555555555


Q ss_pred             CCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCccc
Q psy11648        452 QEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQ  531 (584)
Q Consensus       452 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~  531 (584)
                      +.++...+..+ ++|++|++++|++.+.++..+..+++|++|++++|.+.+..+..|..+++|+.|++++|+++++++..
T Consensus       142 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  220 (285)
T 1ozn_A          142 QALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA  220 (285)
T ss_dssp             CCCCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred             cccCHhHhccC-CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH
Confidence            54444444444 55555555555555555445555555666666655555555555555566666666666665555555


Q ss_pred             ccCCCCccEEEcCCCcCC
Q psy11648        532 FYFSFKLRILNISHNRLR  549 (584)
Q Consensus       532 ~~~~~~L~~L~L~~n~l~  549 (584)
                      +..+++|++|++++|.++
T Consensus       221 ~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          221 LAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             HTTCTTCCEEECCSSCEE
T ss_pred             cccCcccCEEeccCCCcc
Confidence            555556666666665554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.4e-25  Score=217.29  Aligned_cols=246  Identities=22%  Similarity=0.353  Sum_probs=110.8

Q ss_pred             EEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccc--cccccCCCCCcEEEc
Q psy11648        269 WLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIE--SDTFYNLKELNTITL  346 (584)
Q Consensus       269 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l  346 (584)
                      .++++++.++.++.. +  .++|++|++++|.++.++...+..  +++|++|++++|.++...  +..+..+++|++|++
T Consensus        11 ~l~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~i~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           11 EIRCNSKGLTSVPTG-I--PSSATRLELESNKLQSLPHGVFDK--LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             EEECCSSCCSSCCSC-C--CTTCCEEECCSSCCCCCCTTTTTT--CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             EEEcCCCCcccCCCC-C--CCCCCEEECCCCccCccCHhHhhc--cccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            455555555544431 1  234555555555555555444333  455555555555444221  122233444444444


Q ss_pred             cCCcCCCcChhhhccCcCCCEEeccCCCCCccCC-ccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648        347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYP-NAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY  425 (584)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~  425 (584)
                      ++|.+... +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+                  
T Consensus        86 s~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------  146 (306)
T 2z66_A           86 SFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF------------------  146 (306)
T ss_dssp             CSCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT------------------
T ss_pred             CCCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc------------------
Confidence            44443322 1223334444444444444333322 223333333334333333322211111                  


Q ss_pred             cccccccccccccCcccEEEccCCCCCC-CChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccc
Q psy11648        426 ITNLYENDKKQAPIYIKSLDLSNNRIQE-VPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV  504 (584)
Q Consensus       426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  504 (584)
                                ..+++|++|++++|.++. ..+..+..+ ++|++|++++|++.+.++..+..+++|++|++++|.+.+..
T Consensus       147 ----------~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          147 ----------NGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             ----------TTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             ----------ccCcCCCEEECCCCccccccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence                      113455555555554442 112334444 55555555555555554445555555555555555555544


Q ss_pred             ccccCCCCCccEEECCCCCCCCcCcccccCCC-CccEEEcCCCcCC
Q psy11648        505 KRTFIGMPNLQIIDLSFNEISMLTGEQFYFSF-KLRILNISHNRLR  549 (584)
Q Consensus       505 ~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~-~L~~L~L~~n~l~  549 (584)
                      +..+..+++|++|++++|++.+..+..+..++ +|++|++++|.++
T Consensus       216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            44455555555555555555555555554442 5555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=221.99  Aligned_cols=247  Identities=26%  Similarity=0.354  Sum_probs=173.9

Q ss_pred             ceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccE
Q psy11648        240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKE  319 (584)
Q Consensus       240 L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~  319 (584)
                      .+.++..+..+.  .+|..+    .+++++|++++|.++.+.+..+.++++|++|++++|.++.++...+..  +++|++
T Consensus        45 ~~~v~c~~~~l~--~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~--l~~L~~  116 (440)
T 3zyj_A           45 FSKVICVRKNLR--EVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG--LANLNT  116 (440)
T ss_dssp             SCEEECCSCCCS--SCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT--CSSCCE
T ss_pred             CCEEEeCCCCcC--cCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC--CccCCE
Confidence            445566555553  555443    245666666666666666556666666666666666666665555544  666666


Q ss_pred             EEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCC-CCCccCCccCCCCCCCcEEecCCCC
Q psy11648        320 IRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN-QIKYIYPNAFVNLPNLVKLDLQDNK  398 (584)
Q Consensus       320 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~  398 (584)
                      |++++|.++...+..+..+++|++|++++|.+..+.+..+..+++|+.|++++| .+..+.+..+..+++|++|++++|.
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            666666666555555566666666666666666555555555666666666552 3334434445555566666665555


Q ss_pred             CCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccc
Q psy11648        399 LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH  478 (584)
Q Consensus       399 l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  478 (584)
                      ++.                           ++.   ...+++|+.|++++|.++.+++..|..+ ++|++|++++|++..
T Consensus       197 l~~---------------------------~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~  245 (440)
T 3zyj_A          197 LRE---------------------------IPN---LTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQV  245 (440)
T ss_dssp             CSS---------------------------CCC---CTTCSSCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCE
T ss_pred             Ccc---------------------------ccc---cCCCcccCEEECCCCccCccChhhhccC-ccCCEEECCCCceeE
Confidence            543                           321   2236889999999999998887889888 999999999999999


Q ss_pred             cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCC
Q psy11648        479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS  525 (584)
Q Consensus       479 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~  525 (584)
                      +.+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus       246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            99999999999999999999999988888999999999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.5e-24  Score=221.80  Aligned_cols=247  Identities=25%  Similarity=0.361  Sum_probs=179.0

Q ss_pred             ceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccE
Q psy11648        240 LQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKE  319 (584)
Q Consensus       240 L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~  319 (584)
                      .+.++.++..+.  .+|..+    .+++++|++++|.++.+.+..|.++++|++|++++|.++.++...+..  +++|++
T Consensus        56 ~~~v~c~~~~l~--~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~  127 (452)
T 3zyi_A           56 FSKVVCTRRGLS--EVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG--LASLNT  127 (452)
T ss_dssp             SCEEECCSSCCS--SCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCE
T ss_pred             CcEEEECCCCcC--ccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC--cccCCE
Confidence            445666665553  555432    246777777777777666666777777777777777776666555554  666777


Q ss_pred             EEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC-CCCCccCCccCCCCCCCcEEecCCCC
Q psy11648        320 IRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF-NQIKYIYPNAFVNLPNLVKLDLQDNK  398 (584)
Q Consensus       320 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~  398 (584)
                      |++++|.++...+..+..+++|++|++++|.+..+.+..+..+++|+.|++++ +.+..+.+..+..+++|++|++++|.
T Consensus       128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            77776666666555566666666666666666665555566666666666665 33444444455566666666666665


Q ss_pred             CCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccc
Q psy11648        399 LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKH  478 (584)
Q Consensus       399 l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  478 (584)
                      +++.                           +.   ...+++|+.|++++|.++.+++..+..+ ++|++|++++|++.+
T Consensus       208 l~~~---------------------------~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~  256 (452)
T 3zyi_A          208 IKDM---------------------------PN---LTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSL  256 (452)
T ss_dssp             CSSC---------------------------CC---CTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCE
T ss_pred             cccc---------------------------cc---ccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCce
Confidence            5443                           21   2236889999999999999888889998 999999999999999


Q ss_pred             cCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCC
Q psy11648        479 LDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS  525 (584)
Q Consensus       479 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~  525 (584)
                      ..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus       257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            98899999999999999999999888888999999999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=9.1e-24  Score=221.15  Aligned_cols=257  Identities=19%  Similarity=0.202  Sum_probs=149.7

Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648        266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT  345 (584)
Q Consensus       266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  345 (584)
                      ++++|++++|.++.++. .+.  ++|++|++++|.++.++..      +++|++|++++|.++.+..    .+++|++|+
T Consensus        41 ~l~~L~ls~n~L~~lp~-~l~--~~L~~L~L~~N~l~~lp~~------l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLPV----LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCCSCCCS-CCC--TTCSEEEECSCCCSCCCCC------CTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred             CCcEEEecCCCcCccCh-hhC--CCCcEEEecCCCCCCCCCc------CCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence            35555555555554443 221  4555555555555554441      4555555555555554322    345555555


Q ss_pred             ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648        346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY  425 (584)
Q Consensus       346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~  425 (584)
                      +++|.++++..    .+++|+.|++++|.++.+. .   .+++|++|++++|.+++++.       ....++.|++++|.
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l~~-------~~~~L~~L~L~~N~  172 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQ  172 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSC
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCCcCC-------ccCCCCEEECCCCC
Confidence            55555554422    3455566666666555542 2   13556666666666554331       12345666666666


Q ss_pred             cccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc
Q psy11648        426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK  505 (584)
Q Consensus       426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  505 (584)
                      ++.++     ..+++|+.|++++|.++.+|..    . ++|+.|++++|.+..++.    .+++|++|++++|.+++. |
T Consensus       173 l~~l~-----~~~~~L~~L~Ls~N~l~~l~~~----~-~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~l-p  237 (622)
T 3g06_A          173 LTSLP-----MLPSGLQELSVSDNQLASLPTL----P-SELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSL-P  237 (622)
T ss_dssp             CSCCC-----CCCTTCCEEECCSSCCSCCCCC----C-TTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCC-C
T ss_pred             CCCCc-----ccCCCCcEEECCCCCCCCCCCc----c-chhhEEECcCCcccccCC----CCCCCCEEEccCCccCcC-C
Confidence            66554     1246677777777776666531    2 667777777777665542    236677777777777653 2


Q ss_pred             cccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                         ..+++|+.|++++|+++.+++    .+++|++|++++|+|+.+|..+..+++|+.|++++|+++
T Consensus       238 ---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          238 ---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred             ---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence               445677777777777776554    456777777777777777777777777777777777776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1e-24  Score=211.09  Aligned_cols=209  Identities=24%  Similarity=0.307  Sum_probs=117.7

Q ss_pred             cCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCC
Q psy11648        188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL  267 (584)
Q Consensus       188 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L  267 (584)
                      ++|++|+++++.++.+....|.++++|++|++++|.+......+..+..+++|++|++++|.+.  .++..+  ..+++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~l~~~~--~~l~~L  103 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNF--LGLEQL  103 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE--EEEEEE--ETCTTC
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc--cChhhc--CCCCCC
Confidence            5677777777777766666677777777777777776544222344455566666666666553  444443  456666


Q ss_pred             CEEEccCcccccccc-ccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccc-cccccccCCCCCcEEE
Q psy11648        268 EWLAMDNNNIKNIRN-YSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLEL-IESDTFYNLKELNTIT  345 (584)
Q Consensus       268 ~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~  345 (584)
                      ++|++++|.++..+. ..+..+++|++|++++|.+..+....+..  +++|++|++++|.+.+ ..+..+..+++|++|+
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT--CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc--CcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            666666666655543 34555566666666666555444444433  5555555555555554 3344455555555555


Q ss_pred             ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCC
Q psy11648        346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF  402 (584)
Q Consensus       346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  402 (584)
                      +++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus       182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            555555554444455555555555555555544444444455555555555554443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=6.3e-25  Score=210.25  Aligned_cols=267  Identities=24%  Similarity=0.274  Sum_probs=175.1

Q ss_pred             CEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEcc
Q psy11648        268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLS  347 (584)
Q Consensus       268 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  347 (584)
                      ++++.+++.++.++.   ...++|++|++++|.++.++...+..  +++|++|++++|.++...+..+..+++|++|+++
T Consensus        14 ~~~~c~~~~l~~ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV---GIPAASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCSSCCT---TCCTTCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcccCCc---CCCCCceEEEeeCCcCCccCHHHccc--CCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            456666666665543   12356677777777666666555544  6677777777777766666667777777777777


Q ss_pred             CCc-CCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcc
Q psy11648        348 YNL-LKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYI  426 (584)
Q Consensus       348 ~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l  426 (584)
                      +|. +....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++.+...+..                 
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------  151 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-----------------  151 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----------------
Confidence            775 66666667777788888888888877776777778888888888888777655433322                 


Q ss_pred             ccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccccc
Q psy11648        427 TNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKR  506 (584)
Q Consensus       427 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  506 (584)
                                 +++|++|++++|.++.++...+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus       152 -----------l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  219 (285)
T 1ozn_A          152 -----------LGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (285)
T ss_dssp             -----------CTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             -----------CCCccEEECCCCcccccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence                       3566777777777666665566666 7777777777777777666777777788888888777776666


Q ss_pred             ccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC-ccCccccCC--CCcceEECCCC
Q psy11648        507 TFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR-SLPRDVFSN--TIIEKLDISYN  569 (584)
Q Consensus       507 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~lp~~l~~~--~~L~~l~l~~n  569 (584)
                      .+..+++|+.|++++|++....+.. .....++.+..+.+.+. ..|..+...  ..++..++.+|
T Consensus       220 ~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          220 ALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             HHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             HcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            6777788888888887766322211 01123444555555555 456554432  44444445444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=3.9e-25  Score=214.84  Aligned_cols=220  Identities=22%  Similarity=0.225  Sum_probs=125.3

Q ss_pred             ccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCC
Q psy11648        335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ  414 (584)
Q Consensus       335 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~  414 (584)
                      +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++.+        ..+
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~--------~~~   99 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--------VGP   99 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE--------ECT
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc--------CCC
Confidence            3344455555555555555444445555555555555555544322  445555555555555544322        123


Q ss_pred             CCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCcccc-CCCcccCee
Q psy11648        415 TPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAF-GNLDVLELL  493 (584)
Q Consensus       415 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L  493 (584)
                      .++.+++++|.++..+...    +++|++|++++|.++.++...+..+ ++|++|++++|.+.+..+..+ ..+++|++|
T Consensus       100 ~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  174 (317)
T 3o53_A          100 SIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (317)
T ss_dssp             TCCEEECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             CcCEEECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence            4555555555555443322    3556666666666666655555555 666666666666665544444 355666666


Q ss_pred             eccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        494 SLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       494 ~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                      ++++|.++...  ....+++|++|++++|+++++++. +..+++|++|++++|+++.+|..+..+++|+.|++++|+++
T Consensus       175 ~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          175 NLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             ECCCCcCcccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            66666666552  223466666666666666666554 55666666666666666666666666666666666666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.5e-26  Score=245.97  Aligned_cols=433  Identities=14%  Similarity=0.106  Sum_probs=197.0

Q ss_pred             chhhhccccccccccc-ccccc------------------c--ccceeeeecCCceeecCCccccccccceeeEEEecCc
Q psy11648         22 VTKLQHLGTTILKGDQ-LQGIF------------------N--SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNT   80 (584)
Q Consensus        22 l~~l~~Lr~L~l~~~~-l~~l~------------------~--~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n   80 (584)
                      +.++++|++|+++++. +.++.                  .  ++|++|++++|.+.+.....+...+++|+ +|++++|
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~-~L~L~~~  140 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFK-VLVLSSC  140 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCC-EEEEESC
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCc-EEeCCCc
Confidence            4566777888888764 22211                  1  56777777776665544444431126677 7777766


Q ss_pred             -cccc-ccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccc
Q psy11648         81 -QIEE-LPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNL  158 (584)
Q Consensus        81 -~i~~-l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~  158 (584)
                       .++. ....++..+.+|+  +|++++|.+++..+..+..+               ...+++|++|++++|. ..+....
T Consensus       141 ~~~~~~~l~~~~~~~~~L~--~L~L~~~~i~~~~~~~l~~~---------------~~~~~~L~~L~l~~~~-~~~~~~~  202 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLK--ELDLRESDVDDVSGHWLSHF---------------PDTYTSLVSLNISCLA-SEVSFSA  202 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCC--EEECTTCEEECCCGGGGGGS---------------CTTCCCCCEEECTTCC-SCCCHHH
T ss_pred             CCCCHHHHHHHHHhCCCCC--EEeCcCCccCCcchHHHHHH---------------hhcCCcCcEEEecccC-CcCCHHH
Confidence             3442 1222333344477  77777776665444333322               2345667777776664 1221111


Q ss_pred             cchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCc-ccccchhhhcCCCCCCEEEcCCCc-------cceeecC
Q psy11648        159 FRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNK-ITDLNGNLFRHLYNLQELSLSFNK-------LQIIELN  230 (584)
Q Consensus       159 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-------l~~~~~~  230 (584)
                      +                     ..+...+++|++|++++|. +.+ .+..+..+++|++|+++.+.       +.+.   
T Consensus       203 l---------------------~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l---  257 (594)
T 2p1m_B          203 L---------------------ERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGL---  257 (594)
T ss_dssp             H---------------------HHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHH---
T ss_pred             H---------------------HHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHH---
Confidence            1                     1122246777777777763 333 44556667777777755432       1111   


Q ss_pred             CccccccccceEE-eecccccCCCCchhhHhhhcCCCCCEEEccCccccccc-cccccCCCCCcEEEcccCCCcc-cccc
Q psy11648        231 SNVFDVFEKLQLL-EISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIR-NYSLYNLTSLNYINLEYNKISK-IHNN  307 (584)
Q Consensus       231 ~~~~~~l~~L~~L-~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~-i~~~  307 (584)
                      +..+..+++|+.+ .+.+...  ..++...  ..+++|++|++++|.++... ...+..+++|++|++++| +.. ....
T Consensus       258 ~~~l~~~~~L~~Ls~~~~~~~--~~l~~~~--~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~  332 (594)
T 2p1m_B          258 SVALSGCKELRCLSGFWDAVP--AYLPAVY--SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV  332 (594)
T ss_dssp             HHHHHTCTTCCEEECCBTCCG--GGGGGGH--HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred             HHHHhcCCCcccccCCcccch--hhHHHHH--HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence            2244555566655 2222211  2233322  34556666666666544221 112345556666666555 221 0001


Q ss_pred             cccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhh-ccCcCCCEEeccCCCCCccCCccCC-C
Q psy11648        308 LFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSF-KNLNNMLNIVLSFNQIKYIYPNAFV-N  385 (584)
Q Consensus       308 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-~  385 (584)
                      +...  +++|++|++.++.-.+               ....+.+++.....+ ..+++|+.|.+..+.+++.....+. .
T Consensus       333 l~~~--~~~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~  395 (594)
T 2p1m_B          333 LAST--CKDLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN  395 (594)
T ss_dssp             HHHH--CTTCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred             HHHh--CCCCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence            1111  4455555442210000               001112221111111 1245555555555555433222222 3


Q ss_pred             CCCCcEEecC--C----CCCCCCCh-hhhcc-cccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChh
Q psy11648        386 LPNLVKLDLQ--D----NKLKDFNL-NVFSN-ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN  457 (584)
Q Consensus       386 ~~~L~~L~l~--~----~~l~~~~~-~~~~~-~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  457 (584)
                      +++|+.|+++  +    +.+++.+. ..+.. ...++.|+.|++++ .+++.........+++|+.|++++|.+++....
T Consensus       396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~  474 (594)
T 2p1m_B          396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH  474 (594)
T ss_dssp             CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred             CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence            5556666555  2    22332211 11110 11223444444433 222221111111245666666666665432222


Q ss_pred             hH-HHhhCCCcEEEccCCcccccCcc-ccCCCcccCeeeccCccccccccccc-CCCCCccEEECCCC
Q psy11648        458 FL-QTFADSLRKLYLDFNEIKHLDAT-AFGNLDVLELLSLEHNNIAVVVKRTF-IGMPNLQIIDLSFN  522 (584)
Q Consensus       458 ~~-~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~ls~n  522 (584)
                      .+ ..+ ++|++|++++|.+++.... ....+++|++|++++|.++......+ ..+|.|+...+..+
T Consensus       475 ~l~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          475 HVLSGC-DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             HHHHHC-TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             HHHhcC-CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            22 334 6677777776666433222 23346667777776666644322222 34566655555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.7e-26  Score=245.64  Aligned_cols=328  Identities=13%  Similarity=0.122  Sum_probs=156.5

Q ss_pred             hccCCcEEEcCCCcccccchhhh----cCCCCCCEEEcCCCc--cceeecCCccccccccceEEeecccccCCCCchhhH
Q psy11648        186 LLSNLETLLLRCNKITDLNGNLF----RHLYNLQELSLSFNK--LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI  259 (584)
Q Consensus       186 ~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~--l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~  259 (584)
                      .+++|++|++++|.+++.....+    ..+++|++|+++++.  +... .....+..+++|++|++++|... ..++..+
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~L~~~~~~-~~l~~~~  231 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS-ALERLVTRCPNLKSLKLNRAVPL-EKLATLL  231 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHH-HHHHHHHHCTTCCEEECCTTSCH-HHHHHHH
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHH-HHHHHHHhCCCCcEEecCCCCcH-HHHHHHH
Confidence            56777777777776554332222    355677777777664  1100 01122334577777777776322 2344444


Q ss_pred             hhhcCCCCCEEEccCcc-------ccccccccccCCCCCcEE-EcccCCCcccccccccccccCCccEEEcCCCcccccc
Q psy11648        260 LNKNLNTLEWLAMDNNN-------IKNIRNYSLYNLTSLNYI-NLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIE  331 (584)
Q Consensus       260 ~~~~~~~L~~L~l~~~~-------l~~~~~~~l~~l~~L~~L-~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~  331 (584)
                        ..+++|++|+++.+.       +.++.. .+.++++|+.+ .+.+.....++... ..  +++|++|++++|.++...
T Consensus       232 --~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~~~~~l~~~~-~~--~~~L~~L~L~~~~l~~~~  305 (594)
T 2p1m_B          232 --QRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDAVPAYLPAVY-SV--CSRLTTLNLSYATVQSYD  305 (594)
T ss_dssp             --HHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTCCGGGGGGGH-HH--HTTCCEEECTTCCCCHHH
T ss_pred             --hcCCcceEcccccccCccchhhHHHHHH-HHhcCCCcccccCCcccchhhHHHHH-Hh--hCCCCEEEccCCCCCHHH
Confidence              567777777755432       333333 56677777777 34333222232221 12  677777777777755422


Q ss_pred             -cccccCCCCCcEEEccCCcCCCc-ChhhhccCcCCCEEeccC---------CCCCccCCccC-CCCCCCcEEecCCCCC
Q psy11648        332 -SDTFYNLKELNTITLSYNLLKSI-KTTSFKNLNNMLNIVLSF---------NQIKYIYPNAF-VNLPNLVKLDLQDNKL  399 (584)
Q Consensus       332 -~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~~~~l  399 (584)
                       ...+..+++|++|++++| +... .......+++|+.|++..         +.+++.....+ ..+++|++|.+..+.+
T Consensus       306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l  384 (594)
T 2p1m_B          306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM  384 (594)
T ss_dssp             HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCC
T ss_pred             HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCc
Confidence             122456777777777776 3211 112223467777777733         22332211122 2366777776665655


Q ss_pred             CCCChhhhcccccCCCCceEECC--C----Ccccccccc----ccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEE
Q psy11648        400 KDFNLNVFSNITSKQTPMNLNLS--N----NYITNLYEN----DKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL  469 (584)
Q Consensus       400 ~~~~~~~~~~~~~~~~l~~L~l~--~----~~l~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L  469 (584)
                      ++.....+..  .+++|+.|+++  +    +.++..+..    .....+++|+.|++++ .+++.....+....++|+.|
T Consensus       385 ~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L  461 (594)
T 2p1m_B          385 TNAALITIAR--NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEML  461 (594)
T ss_dssp             CHHHHHHHHH--HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEE
T ss_pred             CHHHHHHHHh--hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEe
Confidence            5433222211  23455555555  2    233321110    0122344555555544 33322112222211455555


Q ss_pred             EccCCcccccCcccc-CCCcccCeeeccCccccccccc-ccCCCCCccEEECCCCCCC
Q psy11648        470 YLDFNEIKHLDATAF-GNLDVLELLSLEHNNIAVVVKR-TFIGMPNLQIIDLSFNEIS  525 (584)
Q Consensus       470 ~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~ls~n~i~  525 (584)
                      ++++|.+++.....+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++
T Consensus       462 ~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            555555443322222 3345555555555555332221 2233455555555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.9e-25  Score=216.96  Aligned_cols=239  Identities=21%  Similarity=0.236  Sum_probs=119.9

Q ss_pred             hcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCC
Q psy11648        262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKEL  341 (584)
Q Consensus       262 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  341 (584)
                      ..+++|++|++++|.++..++..+..+++|++|++++|.++.++.  +..  +++|++|++++|.+++..     ..+.|
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~--l~~L~~L~Ls~n~l~~l~-----~~~~L  101 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LES--LSTLRTLDLNNNYVQELL-----VGPSI  101 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETT--CTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhh--cCCCCEEECcCCcccccc-----CCCCc
Confidence            455566666666666666655556666666666666666654443  222  566666666666665442     12566


Q ss_pred             cEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEEC
Q psy11648        342 NTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL  421 (584)
Q Consensus       342 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l  421 (584)
                      ++|++++|.+.+..+.   .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..  ..+.++.|++
T Consensus       102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~l~~L~~L~L  176 (317)
T 3o53_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--SSDTLEHLNL  176 (317)
T ss_dssp             CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG--GTTTCCEEEC
T ss_pred             CEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh--ccCcCCEEEC
Confidence            6666666666554322   2455666666666666655555555666666666666665543332211  1223344444


Q ss_pred             CCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccc
Q psy11648        422 SNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA  501 (584)
Q Consensus       422 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  501 (584)
                      ++|.++..+...   .+++|++|++++|.++.++.. +..+ ++|++|++++|++..++ ..+..+++|++|++++|.+.
T Consensus       177 ~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~-~~~l-~~L~~L~L~~N~l~~l~-~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          177 QYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPE-FQSA-AGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTSCCCEEECCC---CCTTCCEEECCSSCCCEECGG-GGGG-TTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCCB
T ss_pred             CCCcCccccccc---ccccCCEEECCCCcCCcchhh-hccc-CcccEEECcCCcccchh-hHhhcCCCCCEEEccCCCcc
Confidence            444333332211   134455555555555444432 3333 44444444444444332 22344444444444444444


Q ss_pred             -cccccccCCCCCccEEECC
Q psy11648        502 -VVVKRTFIGMPNLQIIDLS  520 (584)
Q Consensus       502 -~~~~~~~~~~~~L~~L~ls  520 (584)
                       +..+..+..++.|+.++++
T Consensus       251 ~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          251 CGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             HHHHHHHHHTCHHHHHHHHH
T ss_pred             CcCHHHHHhccccceEEECC
Confidence             2333334444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=3.7e-24  Score=208.50  Aligned_cols=245  Identities=17%  Similarity=0.151  Sum_probs=162.2

Q ss_pred             CCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCE
Q psy11648        288 LTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN  367 (584)
Q Consensus       288 l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  367 (584)
                      .+.++.|++++|.++.++..+..   +++|++|++++|.++ ..+..+..+++|++|++++|.+.               
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~---l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~---------------  140 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFR---LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR---------------  140 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGG---GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC---------------
T ss_pred             ccceeEEEccCCCchhcChhhhh---CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc---------------
Confidence            35666677777666666555433   555555555555555 22333444455555555555444               


Q ss_pred             EeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEcc
Q psy11648        368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS  447 (584)
Q Consensus       368 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  447 (584)
                               .+ |..+..+++|++|++++|.+.+..+..+...         .+.          ..+..+++|++|+++
T Consensus       141 ---------~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---------~~~----------~~~~~l~~L~~L~L~  191 (328)
T 4fcg_A          141 ---------AL-PASIASLNRLRELSIRACPELTELPEPLAST---------DAS----------GEHQGLVNLQSLRLE  191 (328)
T ss_dssp             ---------CC-CGGGGGCTTCCEEEEEEETTCCCCCSCSEEE---------C-C----------CCEEESTTCCEEEEE
T ss_pred             ---------cC-cHHHhcCcCCCEEECCCCCCccccChhHhhc---------cch----------hhhccCCCCCEEECc
Confidence                     22 3344444455555554443332222111110         000          012236788899999


Q ss_pred             CCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCc
Q psy11648        448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISML  527 (584)
Q Consensus       448 ~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  527 (584)
                      +|.++.+| ..+..+ ++|++|++++|++.++++ .+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.
T Consensus       192 ~n~l~~lp-~~l~~l-~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          192 WTGIRSLP-ASIANL-QNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             EECCCCCC-GGGGGC-TTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred             CCCcCcch-HhhcCC-CCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence            98888887 447777 899999999999887655 578889999999999999888888899999999999999998888


Q ss_pred             CcccccCCCCccEEEcCCCcCC-ccCccccCCCCcceEECCCCCCCCCCCCCCCCCC
Q psy11648        528 TGEQFYFSFKLRILNISHNRLR-SLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRP  583 (584)
Q Consensus       528 ~~~~~~~~~~L~~L~L~~n~l~-~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~~~  583 (584)
                      .|..+..+++|++|++++|.+. .+|..+..+++|+.+++..+.+..++....-..|
T Consensus       269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~~~~~~p  325 (328)
T 4fcg_A          269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP  325 (328)
T ss_dssp             CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC----------
T ss_pred             cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhhhccccc
Confidence            8888889999999999998654 7999999999999999998888877766555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=2e-23  Score=203.29  Aligned_cols=240  Identities=13%  Similarity=0.105  Sum_probs=191.3

Q ss_pred             hcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCC
Q psy11648        262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKEL  341 (584)
Q Consensus       262 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  341 (584)
                      ...+.+++|++++|.++.++. .+..+++|++|++++|.++.+|..+..   +++|++|++++|.++.+ +..+..+++|
T Consensus        78 ~~~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~~~~---l~~L~~L~Ls~n~l~~l-p~~l~~l~~L  152 (328)
T 4fcg_A           78 ATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELPDTMQQ---FAGLETLTLARNPLRAL-PASIASLNRL  152 (328)
T ss_dssp             HTSTTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCCCCCSCGGG---GTTCSEEEEESCCCCCC-CGGGGGCTTC
T ss_pred             ccccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCccchhHHHhc---cCCCCEEECCCCccccC-cHHHhcCcCC
Confidence            356889999999999997765 688899999999999999988776544   89999999999999954 6678889999


Q ss_pred             cEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEEC
Q psy11648        342 NTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL  421 (584)
Q Consensus       342 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l  421 (584)
                      ++|++++|.+.+..+..+..      ..         .+..+..+++|++|++++|.++.++. .+              
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~~lp~-~l--------------  202 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIRSLPA-SI--------------  202 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCCCCG-GG--------------
T ss_pred             CEEECCCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcCcchH-hh--------------
Confidence            99999998776665544332      11         12234556777777777777664321 12              


Q ss_pred             CCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccc
Q psy11648        422 SNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA  501 (584)
Q Consensus       422 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  501 (584)
                                    ..+++|++|++++|.++.+|. .+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       203 --------------~~l~~L~~L~L~~N~l~~l~~-~l~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          203 --------------ANLQNLKSLKIRNSPLSALGP-AIHHL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             --------------GGCTTCCEEEEESSCCCCCCG-GGGGC-TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred             --------------cCCCCCCEEEccCCCCCcCch-hhccC-CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence                          124778888888888888774 46677 88999999998888887888899999999999999998


Q ss_pred             cccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy11648        502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP  552 (584)
Q Consensus       502 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp  552 (584)
                      +.+|..+..+++|++|++++|++.+..|..+..+++|+.+++..+.+..++
T Consensus       267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD  317 (328)
T ss_dssp             CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred             hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence            898988999999999999999999888899999999999999988766554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=1e-22  Score=213.26  Aligned_cols=176  Identities=19%  Similarity=0.160  Sum_probs=104.3

Q ss_pred             cCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCC
Q psy11648        188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL  267 (584)
Q Consensus       188 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L  267 (584)
                      .+++.|+++++.++.++.. +.  ++|++|++++|.+..+   +.   .+++|++|++++|.+.  .+|.     .+++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~~-l~--~~L~~L~L~~N~l~~l---p~---~l~~L~~L~Ls~N~l~--~lp~-----~l~~L  103 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSL---PA---LPPELRTLEVSGNQLT--SLPV-----LPPGL  103 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSC-CC--TTCSEEEECSCCCSCC---CC---CCTTCCEEEECSCCCS--CCCC-----CCTTC
T ss_pred             CCCcEEEecCCCcCccChh-hC--CCCcEEEecCCCCCCC---CC---cCCCCCEEEcCCCcCC--cCCC-----CCCCC
Confidence            4588888888888755442 32  6788888888877654   33   4567777777777664  4553     45667


Q ss_pred             CEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEcc
Q psy11648        268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLS  347 (584)
Q Consensus       268 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  347 (584)
                      ++|++++|.++.++.    .+++|++|++++|+++.++..      +++|++|++++|.++.+..    .+++|+.|+++
T Consensus       104 ~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~------l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~  169 (622)
T 3g06_A          104 LELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL------PPGLQELSVSDNQLASLPA----LPSELCKLWAY  169 (622)
T ss_dssp             CEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSCCCC----CCTTCCEEECC
T ss_pred             CEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC------CCCCCEEECcCCcCCCcCC----ccCCCCEEECC
Confidence            777777776666543    356677777777766665542      4566666666666654321    23455566666


Q ss_pred             CCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCC
Q psy11648        348 YNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKD  401 (584)
Q Consensus       348 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  401 (584)
                      +|.++++.    ..+++|+.|++++|.++++. .   ..++|+.|++++|.++.
T Consensus       170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~  215 (622)
T 3g06_A          170 NNQLTSLP----MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTS  215 (622)
T ss_dssp             SSCCSCCC----CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS
T ss_pred             CCCCCCCc----ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCcccc
Confidence            66555432    23455555555555555431 1   12455555555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=9e-24  Score=217.00  Aligned_cols=215  Identities=22%  Similarity=0.243  Sum_probs=121.1

Q ss_pred             CCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceE
Q psy11648        340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNL  419 (584)
Q Consensus       340 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L  419 (584)
                      +|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++.+        ..+.++.|
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--------~~~~L~~L  104 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--------VGPSIETL  104 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE--------ECTTCCEE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC--------CCCCcCEE
Confidence            44444444444444444444444555555555554444322  444555555555555444322        11344555


Q ss_pred             ECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccC-CCcccCeeeccCc
Q psy11648        420 NLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG-NLDVLELLSLEHN  498 (584)
Q Consensus       420 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n  498 (584)
                      ++++|.++..+...    +++|+.|++++|.++.+++..+..+ ++|+.|++++|.+.+.++..+. .+++|++|++++|
T Consensus       105 ~L~~N~l~~~~~~~----l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          105 HAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             ECCSSCCCCEEECC----CSSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             ECcCCcCCCCCccc----cCCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            55555555443321    3556666666666666555555555 6666666666666665554443 5666666666666


Q ss_pred             ccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        499 NIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       499 ~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                      .+++..+  +..+++|+.|++++|.++++++. +..+++|+.|++++|.++++|..+..+++|+.|++++|+++
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            6665522  33466666666666666666554 55666666666666666666666666666666666666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=4.7e-25  Score=213.73  Aligned_cols=106  Identities=21%  Similarity=0.169  Sum_probs=69.5

Q ss_pred             CCCcEEEccCCcccc---cCccccCCCcccCeeeccCcccccccc-cccCCCCCccEEECCCCCCCCcCcccccCCCCcc
Q psy11648        464 DSLRKLYLDFNEIKH---LDATAFGNLDVLELLSLEHNNIAVVVK-RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLR  539 (584)
Q Consensus       464 ~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~  539 (584)
                      ++|++|++++|++.+   .....+..+++|++|++++|.+.+..+ ..+..+++|++|++++|+++.++.. +.  ++|+
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~  277 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG-LP--AKLS  277 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS-CC--SEEE
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh-cc--CCce
Confidence            445555555554442   122233455666777777776666543 3455667788888888887765443 32  7888


Q ss_pred             EEEcCCCcCCccCccccCCCCcceEECCCCCCCC
Q psy11648        540 ILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKI  573 (584)
Q Consensus       540 ~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~  573 (584)
                      +|++++|+|+.+|. +..+++|+.|++++|+++.
T Consensus       278 ~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          278 VLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             EEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            88888888888875 7777888888888888874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=3.5e-22  Score=190.10  Aligned_cols=204  Identities=25%  Similarity=0.332  Sum_probs=86.5

Q ss_pred             CccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecC
Q psy11648        316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ  395 (584)
Q Consensus       316 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  395 (584)
                      ++++|++++|.++...+..+..+++|++|++++|.+.++.+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34444444444444443344444555555555555444444444445555555555555554444445555555555555


Q ss_pred             CCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCc----EEEc
Q psy11648        396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLR----KLYL  471 (584)
Q Consensus       396 ~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~----~L~l  471 (584)
                      +|.+.+.....+..   .+.|+.|++++|.++.......+..+++|++|++++|.++.++...+..+ ++|+    +|++
T Consensus       109 ~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~l  184 (276)
T 2z62_A          109 ETNLASLENFPIGH---LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDL  184 (276)
T ss_dssp             TSCCCCSTTCCCTT---CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEEC
T ss_pred             CCCccccCchhccc---CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeec
Confidence            55544433221111   11222222222222211111111123455555555555554444444444 4444    4444


Q ss_pred             cCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCC
Q psy11648        472 DFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI  524 (584)
Q Consensus       472 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i  524 (584)
                      ++|.+.++++..+.. .+|++|++++|.++...+..|..+++|++|++++|++
T Consensus       185 s~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          185 SLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence            444444443333322 2344444444444433333344444444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3e-22  Score=191.24  Aligned_cols=203  Identities=20%  Similarity=0.241  Sum_probs=152.7

Q ss_pred             ccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCC
Q psy11648        335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ  414 (584)
Q Consensus       335 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~  414 (584)
                      +..++++++++++++.++.+... +  .+.++.|++++|.+++..+..+..+++|++|++++|.++              
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--------------   68 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--------------   68 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC--------------
T ss_pred             ccccCCccEEECCCCCCCcCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC--------------
Confidence            34455556666665555544221 1  145555555555555554455555555555555555544              


Q ss_pred             CCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeee
Q psy11648        415 TPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLS  494 (584)
Q Consensus       415 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  494 (584)
                                   .++..   ..+++|++|++++|.++.+| ..+..+ ++|++|++++|++..+++..|.++++|++|+
T Consensus        69 -------------~~~~~---~~l~~L~~L~Ls~N~l~~l~-~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           69 -------------KLQVD---GTLPVLGTLDLSHNQLQSLP-LLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (290)
T ss_dssp             -------------EEECC---SCCTTCCEEECCSSCCSSCC-CCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             -------------cccCC---CCCCcCCEEECCCCcCCcCc-hhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence                         33222   23578888888888888877 355666 8899999999999888888889999999999


Q ss_pred             ccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       495 l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                      +++|.+....+..|..+++|+.|++++|+++.+++..|..+++|++|++++|+++.+|..++..++|+.+++++|++.
T Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            999999888777888999999999999999998888888899999999999999999999999999999999999886

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=5.7e-22  Score=187.79  Aligned_cols=111  Identities=23%  Similarity=0.386  Sum_probs=60.7

Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII  517 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  517 (584)
                      +++|++|++++|.++.++...+..+ ++|++|++++|.+..+++..|..+++|++|++++|.+....+..|..+++|++|
T Consensus       108 l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  186 (270)
T 2o6q_A          108 LVNLAELRLDRNQLKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL  186 (270)
T ss_dssp             CSSCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             ccCCCEEECCCCccCeeCHHHhCcC-cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence            3455555555555555554445554 555555555555555554445555555555555555555444445555555555


Q ss_pred             ECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      ++++|+++++++..|..+++|++|++++|.+.
T Consensus       187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            55555555555555555555555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=5e-24  Score=206.48  Aligned_cols=185  Identities=16%  Similarity=0.114  Sum_probs=134.4

Q ss_pred             cCCCCCcEEEccCCcCCCcChhhhccC-----cCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhccc
Q psy11648        336 YNLKELNTITLSYNLLKSIKTTSFKNL-----NNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNI  410 (584)
Q Consensus       336 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  410 (584)
                      ..+++|++|++++|.+++. +..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+... ..   
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~---  192 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-LI---  192 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-HH---
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH-HH---
Confidence            4556666666666666655 4444444     777888888888777766777788888888888887543210 00   


Q ss_pred             ccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCC---hhhHHHhhCCCcEEEccCCcccccCc-cccCC
Q psy11648        411 TSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP---VNFLQTFADSLRKLYLDFNEIKHLDA-TAFGN  486 (584)
Q Consensus       411 ~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~  486 (584)
                                          ....+..+++|++|++++|.++.++   ...+..+ ++|++|++++|++.+..+ ..+..
T Consensus       193 --------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          193 --------------------SALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             --------------------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             --------------------HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccchhhhhh
Confidence                                0011123578888888888887443   3445566 899999999999987653 45667


Q ss_pred             CcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy11648        487 LDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL  551 (584)
Q Consensus       487 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l  551 (584)
                      +++|++|++++|.++ .+|..+.  ++|++|++++|++++++ . +..+++|++|++++|+++..
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p-~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNP-S-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCC-C-TTTSCEEEEEECTTCTTTCC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCCh-h-HhhCCCCCEEeccCCCCCCC
Confidence            899999999999998 5555554  89999999999999884 4 88899999999999998753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=6.2e-23  Score=210.76  Aligned_cols=235  Identities=20%  Similarity=0.244  Sum_probs=125.7

Q ss_pred             CCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEE
Q psy11648        265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTI  344 (584)
Q Consensus       265 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  344 (584)
                      ++|++|++++|.+++.++..+..+++|++|++++|.++..++  +..  +++|++|++++|.+++..+     .+.|+.|
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~--l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LES--LSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTT--CTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--ccc--CCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            378888888888888777778888888888888888775554  333  6777777777777765432     2566666


Q ss_pred             EccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCC
Q psy11648        345 TLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN  424 (584)
Q Consensus       345 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~  424 (584)
                      ++++|.+.+..+.   .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+.                
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----------------  165 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----------------  165 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG----------------
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh----------------
Confidence            6666666554322   234455555555555444444444444444444444444432222111                


Q ss_pred             ccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccc
Q psy11648        425 YITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV  504 (584)
Q Consensus       425 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  504 (584)
                                 ..+++|+.|++++|.++.++...  .+ ++|+.|++++|.+.++++. +..+++|+.|++++|.+.+ +
T Consensus       166 -----------~~l~~L~~L~Ls~N~l~~~~~~~--~l-~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-l  229 (487)
T 3oja_A          166 -----------ASSDTLEHLNLQYNFIYDVKGQV--VF-AKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-I  229 (487)
T ss_dssp             -----------GGTTTCCEEECTTSCCCEEECCC--CC-TTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-E
T ss_pred             -----------hhCCcccEEecCCCccccccccc--cC-CCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-c
Confidence                       11345555555555555443211  12 4555555555555544332 4444555555555555543 2


Q ss_pred             ccccCCCCCccEEECCCCCCC-CcCcccccCCCCccEEEc
Q psy11648        505 KRTFIGMPNLQIIDLSFNEIS-MLTGEQFYFSFKLRILNI  543 (584)
Q Consensus       505 ~~~~~~~~~L~~L~ls~n~i~-~~~~~~~~~~~~L~~L~L  543 (584)
                      |..+..+++|+.|++++|.+. +..|..+..++.|+.+++
T Consensus       230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            333444555555555555544 333333444444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=2.2e-21  Score=183.72  Aligned_cols=202  Identities=27%  Similarity=0.401  Sum_probs=122.6

Q ss_pred             CCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEe
Q psy11648        290 SLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIV  369 (584)
Q Consensus       290 ~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  369 (584)
                      ..+.++++++.++.+|..+     .+.++.|++++|.++...+..+..+++|++|++++|.++.+.+..+..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~~ip~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI-----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC-----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCCccCCCC-----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            3556666666666655432     34566666666666655555555566666666666655555444455555566666


Q ss_pred             ccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCC
Q psy11648        370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNN  449 (584)
Q Consensus       370 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~  449 (584)
                      +++|.+....+..+..+++|++|++++|.+++.++..+.                            .+++|++|++++|
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------------------~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----------------------------SLTKLTYLSLGYN  143 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT----------------------------TCTTCCEEECCSS
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC----------------------------cCcCCCEEECCCC
Confidence            665555555444555555555555555555544332221                            2456677777777


Q ss_pred             CCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCC
Q psy11648        450 RIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS  525 (584)
Q Consensus       450 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~  525 (584)
                      .++.++...+..+ ++|++|++++|++..+++..|..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus       144 ~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          144 ELQSLPKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCccCHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            7666666556666 67777777777776666666666777777777777776665556666777777777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=5.5e-21  Score=181.84  Aligned_cols=210  Identities=22%  Similarity=0.338  Sum_probs=162.9

Q ss_pred             CCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEE
Q psy11648        265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTI  344 (584)
Q Consensus       265 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  344 (584)
                      +++++|++++|.++..++..+..+++|++|++++|.++.++...+..  +++|++|++++|.++...+..+..+++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--LSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC--CcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            46888888888888877767888888888888888888777766655  7888888888888887776777778888888


Q ss_pred             EccCCcCCCcChhhhccCcCCCEEeccCCCCCcc-CCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC
Q psy11648        345 TLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI-YPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN  423 (584)
Q Consensus       345 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~  423 (584)
                      ++++|.+.+..+..+..+++|+.|++++|.+.+. .|..+..+++|++|++++|.+++.....+..+.            
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------------  173 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH------------  173 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH------------
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh------------
Confidence            8888887776665677777888888888877764 366777777888888888777766554443321            


Q ss_pred             CccccccccccccccCccc-EEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccc
Q psy11648        424 NYITNLYENDKKQAPIYIK-SLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAV  502 (584)
Q Consensus       424 ~~l~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  502 (584)
                                   ..+.+. .+++++|.++.++...+..  .+|++|++++|++.+.++..|..+++|++|++++|.+.+
T Consensus       174 -------------~L~~l~l~L~ls~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          174 -------------QMPLLNLSLDLSLNPMNFIQPGAFKE--IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             -------------TCTTCCEEEECCSSCCCEECTTSSCS--CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             -------------hccccceeeecCCCcccccCccccCC--CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence                         122233 7999999999888666654  589999999999999988888999999999999999875


Q ss_pred             c
Q psy11648        503 V  503 (584)
Q Consensus       503 ~  503 (584)
                      .
T Consensus       239 ~  239 (276)
T 2z62_A          239 S  239 (276)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=2.1e-21  Score=183.96  Aligned_cols=206  Identities=24%  Similarity=0.323  Sum_probs=131.2

Q ss_pred             cCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEe
Q psy11648        314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD  393 (584)
Q Consensus       314 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  393 (584)
                      +++|+.|++.++.++...  .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            555666666666555432  244555666666666655543  2445555555555555555555444455555555555


Q ss_pred             cCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccC
Q psy11648        394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDF  473 (584)
Q Consensus       394 l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~  473 (584)
                      +++|.+++.++..+                            ..+++|++|++++|.++.++...+..+ ++|++|++++
T Consensus       116 L~~n~l~~~~~~~~----------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~  166 (272)
T 3rfs_A          116 LVENQLQSLPDGVF----------------------------DKLTNLTYLNLAHNQLQSLPKGVFDKL-TNLTELDLSY  166 (272)
T ss_dssp             CTTSCCCCCCTTTT----------------------------TTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCS
T ss_pred             CCCCcCCccCHHHh----------------------------ccCCCCCEEECCCCccCccCHHHhccC-ccCCEEECCC
Confidence            55555544333222                            124677777777777777776666666 7778888887


Q ss_pred             CcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC-ccC
Q psy11648        474 NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR-SLP  552 (584)
Q Consensus       474 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~lp  552 (584)
                      |++.+.++..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+       .++.|+.|++++|+++ .+|
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred             CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence            77777776667777777888887777777766667777777777777776643       3567777777777776 467


Q ss_pred             ccccCCC
Q psy11648        553 RDVFSNT  559 (584)
Q Consensus       553 ~~l~~~~  559 (584)
                      .++..++
T Consensus       240 ~~~~~~~  246 (272)
T 3rfs_A          240 NSAGSVA  246 (272)
T ss_dssp             CTTSCBC
T ss_pred             CcccccC
Confidence            6666553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.1e-21  Score=180.48  Aligned_cols=125  Identities=21%  Similarity=0.234  Sum_probs=76.0

Q ss_pred             CcccEEEccCCCCCCCChhhHHHhhCCCc---EEEccCC-cccccCccccCCCcccC-eeeccCcccccccccccCCCCC
Q psy11648        439 IYIKSLDLSNNRIQEVPVNFLQTFADSLR---KLYLDFN-EIKHLDATAFGNLDVLE-LLSLEHNNIAVVVKRTFIGMPN  513 (584)
Q Consensus       439 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~  513 (584)
                      ++|++|++++|.++.+|.  +..+ ++|+   +|++++| .+..+++..|.++++|+ +|++++|.++...+..|.. ++
T Consensus       105 ~~L~~L~l~~n~l~~lp~--~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~  180 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKMFPD--LTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TK  180 (239)
T ss_dssp             TTCCEEEEEEECCCSCCC--CTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CE
T ss_pred             CCCCEEeCCCCCCccccc--cccc-cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CC
Confidence            444444444444444442  3333 4444   5666665 55555555566666666 6666666666443334444 67


Q ss_pred             ccEEECCCCC-CCCcCcccccCC-CCccEEEcCCCcCCccCccccCCCCcceEECCCC
Q psy11648        514 LQIIDLSFNE-ISMLTGEQFYFS-FKLRILNISHNRLRSLPRDVFSNTIIEKLDISYN  569 (584)
Q Consensus       514 L~~L~ls~n~-i~~~~~~~~~~~-~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n  569 (584)
                      |++|++++|+ ++++++..|..+ ++|++|++++|+++.+|..  .+++|+.|+++++
T Consensus       181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            7777777774 776666667777 7777777777777777655  4567777777665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=1.2e-21  Score=185.69  Aligned_cols=214  Identities=23%  Similarity=0.344  Sum_probs=144.9

Q ss_pred             hhccccccccccccccccc----ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceee
Q psy11648         25 LQHLGTTILKGDQLQGIFN----SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMT  100 (584)
Q Consensus        25 l~~Lr~L~l~~~~l~~l~~----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~  100 (584)
                      ++.+..+++..+.+.++..    ++|+.|++++|.+.++.  .+..+ ++|+ +|++++|.+..++  .+..+.+|+  +
T Consensus        18 ~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l-~~L~-~L~l~~n~l~~~~--~l~~l~~L~--~   89 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVR-YLALGGNKLHDIS--ALKELTNLT--Y   89 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGC-TTCC-EEECTTSCCCCCG--GGTTCTTCC--E
T ss_pred             HHHHHHHHhcCcccccccccccccceeeeeeCCCCccccc--ccccC-CCCc-EEECCCCCCCCch--hhcCCCCCC--E
Confidence            3444444777776666444    77888888888777653  35565 7788 8888888777654  344444588  8


Q ss_pred             eecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCccc
Q psy11648        101 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV  180 (584)
Q Consensus       101 L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  180 (584)
                      |++++|.+++..+.                   .+.++++|++|++++|.+++..+.                       
T Consensus        90 L~L~~n~l~~~~~~-------------------~~~~l~~L~~L~L~~n~l~~~~~~-----------------------  127 (272)
T 3rfs_A           90 LILTGNQLQSLPNG-------------------VFDKLTNLKELVLVENQLQSLPDG-----------------------  127 (272)
T ss_dssp             EECTTSCCCCCCTT-------------------TTTTCTTCCEEECTTSCCCCCCTT-----------------------
T ss_pred             EECCCCccCccChh-------------------HhcCCcCCCEEECCCCcCCccCHH-----------------------
Confidence            88888877654332                   234557788888888877766432                       


Q ss_pred             chhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHh
Q psy11648        181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYIL  260 (584)
Q Consensus       181 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~  260 (584)
                       .+. .+++|++|++++|.++...+..+..+++|++|++++|++.+.  .+..+..+++|++|++++|.+.  .++...+
T Consensus       128 -~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~  201 (272)
T 3rfs_A          128 -VFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL--PEGVFDKLTQLKDLRLYQNQLK--SVPDGVF  201 (272)
T ss_dssp             -TTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCS--CCCTTTT
T ss_pred             -Hhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc--CHHHhcCCccCCEEECCCCcCC--ccCHHHH
Confidence             222 567788888888877777666677777888888888777765  5556677778888888887775  4444444


Q ss_pred             hhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCc
Q psy11648        261 NKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS  302 (584)
Q Consensus       261 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  302 (584)
                       ..+++|++|++++|.+.       +.++.|+.++++.|.++
T Consensus       202 -~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~  235 (272)
T 3rfs_A          202 -DRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHS  235 (272)
T ss_dssp             -TTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTG
T ss_pred             -hCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCC
Confidence             67778888888887654       33556777777777666

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=3.7e-22  Score=197.65  Aligned_cols=254  Identities=19%  Similarity=0.176  Sum_probs=143.6

Q ss_pred             EEcccCCCcccccccccccccCCccEEEcCCCccccccc----ccccCCC-CCcEEEccCCcCCCcChhhhccC-----c
Q psy11648        294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIES----DTFYNLK-ELNTITLSYNLLKSIKTTSFKNL-----N  363 (584)
Q Consensus       294 L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~  363 (584)
                      +.++.+.+++..+.+...  .++|++|++++|.++...+    ..+..++ +|++|++++|.+++..+..+..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSI--PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTS--CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHhC--CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            456677776555544443  4558888888888777655    5566666 78888888887776655555543     7


Q ss_pred             CCCEEeccCCCCCccCCcc----CCCC-CCCcEEecCCCCCCCCChhhhccc-cc-CCCCceEECCCCcccccccccc--
Q psy11648        364 NMLNIVLSFNQIKYIYPNA----FVNL-PNLVKLDLQDNKLKDFNLNVFSNI-TS-KQTPMNLNLSNNYITNLYENDK--  434 (584)
Q Consensus       364 ~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~l~~~~~~~~~~~-~~-~~~l~~L~l~~~~l~~~~~~~~--  434 (584)
                      +|++|++++|.+++..+..    +..+ ++|++|++++|.+++.....+... .. ...++.|++++|.+++......  
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            7788888877777654443    3333 677788888777777666554332 11 2356666666666654332211  


Q ss_pred             -cccc-CcccEEEccCCCCCCCChhhHH----HhhCCCcEEEccCCcccccCc----cccCC-CcccCeeeccCcccccc
Q psy11648        435 -KQAP-IYIKSLDLSNNRIQEVPVNFLQ----TFADSLRKLYLDFNEIKHLDA----TAFGN-LDVLELLSLEHNNIAVV  503 (584)
Q Consensus       435 -~~~~-~~L~~L~l~~~~l~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~----~~l~~-l~~L~~L~l~~n~~~~~  503 (584)
                       .... ++|++|++++|.++......+.    .++++|++|++++|.+.....    ..+.. .++|++|++++|.+.+.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence             0112 2566666666666544433222    221356666666666554221    12222 24566666666665543


Q ss_pred             cc----cccCCCCCccEEECCCCCCCCcCcc-------cccCCCCccEEEcCCCcCC
Q psy11648        504 VK----RTFIGMPNLQIIDLSFNEISMLTGE-------QFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       504 ~~----~~~~~~~~L~~L~ls~n~i~~~~~~-------~~~~~~~L~~L~L~~n~l~  549 (584)
                      .+    ..+..+++|++|++++|.+.++.+.       .+..+++|++|++++|++.
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            22    2345556666666666654333222       3445555666666666555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=2.9e-20  Score=177.41  Aligned_cols=110  Identities=23%  Similarity=0.277  Sum_probs=53.5

Q ss_pred             cCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCC
Q psy11648        286 YNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM  365 (584)
Q Consensus       286 ~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  365 (584)
                      ..++++++++++++.++.+|..+     .+.++.|++++|.++...+..+..+++|++|++++|.++++...  ..+++|
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~-----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL-----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC-----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             cccCCccEEECCCCCCCcCCCCC-----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            34444555555555555444432     23445555555555544444455555555555555555443221  344555


Q ss_pred             CEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCC
Q psy11648        366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFN  403 (584)
Q Consensus       366 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  403 (584)
                      +.|++++|.+..+ |..+..+++|++|++++|.+++.+
T Consensus        80 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~  116 (290)
T 1p9a_G           80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLP  116 (290)
T ss_dssp             CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCC
T ss_pred             CEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccC
Confidence            5555555555433 334445555555555555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.1e-21  Score=177.84  Aligned_cols=198  Identities=25%  Similarity=0.365  Sum_probs=152.5

Q ss_pred             cCCccEEEcCCCcccccccccccCCCCCcEEEccCCc-CCCcChhhhccCcCCCEEeccC-CCCCccCCccCCCCCCCcE
Q psy11648        314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNL-LKSIKTTSFKNLNNMLNIVLSF-NQIKYIYPNAFVNLPNLVK  391 (584)
Q Consensus       314 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~  391 (584)
                      .++++.|++++|.++...+..+..+++|++|++++|. ++.+.+..+..+++|+.|++++ |.++.+.+..+..+++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            4567777777777776666667777777777777775 7666666677777888888877 7777776667777788888


Q ss_pred             EecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCccc---EEEccCC-CCCCCChhhHHHhhCCCc
Q psy11648        392 LDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIK---SLDLSNN-RIQEVPVNFLQTFADSLR  467 (584)
Q Consensus       392 L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~~~~~~~~L~  467 (584)
                      |++++|.+++.+.  +..                            +++|+   +|++++| .++.++...|..+ ++|+
T Consensus       110 L~l~~n~l~~lp~--~~~----------------------------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l-~~L~  158 (239)
T 2xwt_C          110 LGIFNTGLKMFPD--LTK----------------------------VYSTDIFFILEITDNPYMTSIPVNAFQGL-CNET  158 (239)
T ss_dssp             EEEEEECCCSCCC--CTT----------------------------CCBCCSEEEEEEESCTTCCEECTTTTTTT-BSSE
T ss_pred             EeCCCCCCccccc--ccc----------------------------ccccccccEEECCCCcchhhcCcccccch-hcce
Confidence            8888777765432  211                            34444   8888888 8888887778887 8899


Q ss_pred             -EEEccCCcccccCccccCCCcccCeeeccCcc-cccccccccCCC-CCccEEECCCCCCCCcCcccccCCCCccEEEcC
Q psy11648        468 -KLYLDFNEIKHLDATAFGNLDVLELLSLEHNN-IAVVVKRTFIGM-PNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS  544 (584)
Q Consensus       468 -~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~  544 (584)
                       +|++++|++..++...|.. ++|++|++++|. ++...+..|..+ ++|+.|++++|+++++++.   .+++|++|+++
T Consensus       159 ~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~  234 (239)
T 2xwt_C          159 LTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR  234 (239)
T ss_dssp             EEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred             eEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeecc
Confidence             9999999988777777766 889999999994 887777788899 9999999999999988765   46789999998


Q ss_pred             CC
Q psy11648        545 HN  546 (584)
Q Consensus       545 ~n  546 (584)
                      ++
T Consensus       235 ~~  236 (239)
T 2xwt_C          235 NT  236 (239)
T ss_dssp             TC
T ss_pred             Cc
Confidence            76

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=8.1e-21  Score=183.24  Aligned_cols=199  Identities=24%  Similarity=0.343  Sum_probs=142.9

Q ss_pred             cCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCC
Q psy11648        336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQT  415 (584)
Q Consensus       336 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  415 (584)
                      ..+++|++|++++|.+....  .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++.+     .+..++.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~  108 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-----AIAGLQS  108 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-----GGTTCTT
T ss_pred             HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-----hhcCCCC
Confidence            45678889999988887653  56778889999999888887743  788888999999988887652     2334567


Q ss_pred             CceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648        416 PMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL  495 (584)
Q Consensus       416 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  495 (584)
                      |+.|++++|.++..+.   ...+++|++|++++|.++.++.  +..+ ++|++|++++|++.+.++  +..+++|++|++
T Consensus       109 L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l  180 (308)
T 1h6u_A          109 IKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP--LAGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKA  180 (308)
T ss_dssp             CCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc--ccCC-CCccEEEccCCcCCCChh--hcCCCCCCEEEC
Confidence            7777777777776543   3446777777777777776653  5555 777777777777766544  667777777777


Q ss_pred             cCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccc
Q psy11648        496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV  555 (584)
Q Consensus       496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l  555 (584)
                      ++|.+.+..+  +..+++|++|++++|++.++++  +..+++|++|++++|+++..|...
T Consensus       181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~~~  236 (308)
T 1h6u_A          181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY  236 (308)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred             CCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCeee
Confidence            7777766543  6677777777777777776653  666777777777777777665443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=1.1e-21  Score=194.21  Aligned_cols=260  Identities=18%  Similarity=0.232  Sum_probs=153.9

Q ss_pred             EeecccccCCCCchhhHhhhcCCCCCEEEccCcccccccc----ccccCCC-CCcEEEcccCCCcccccccccc--cc-c
Q psy11648        243 LEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRN----YSLYNLT-SLNYINLEYNKISKIHNNLFHF--NI-H  314 (584)
Q Consensus       243 L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~~~l~~i~~~~~~~--~~-~  314 (584)
                      ..++.+.+. +.+|...  ...++|++|++++|.++....    .++..++ +|++|++++|.++......+..  .. .
T Consensus         3 ~~ls~n~~~-~~~~~~~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGS-NPVEEFT--SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTTC-CHHHHHH--TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             cccccccch-HHHHHHH--hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            456666665 4444443  455568888888887776665    5566677 7778888777776544332221  00 1


Q ss_pred             CCccEEEcCCCccccccccc----ccCC-CCCcEEEccCCcCCCcChhhhc----c-CcCCCEEeccCCCCCccCCc---
Q psy11648        315 KRLKEIRLSNNYLELIESDT----FYNL-KELNTITLSYNLLKSIKTTSFK----N-LNNMLNIVLSFNQIKYIYPN---  381 (584)
Q Consensus       315 ~~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~L~l~~~~~~~~~~~---  381 (584)
                      ++|++|++++|.++...+..    +..+ ++|++|++++|.+++.....+.    . .++|++|++++|.+++....   
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            55666666666655433321    2222 4555555555555444332222    1 13455555555544432211   


Q ss_pred             -cCCCCC-CCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcccccccccccccc-CcccEEEccCCCCCCCChh-
Q psy11648        382 -AFVNLP-NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAP-IYIKSLDLSNNRIQEVPVN-  457 (584)
Q Consensus       382 -~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~-  457 (584)
                       .+...+ +|++|++++|.+++.....+...                        ...+ ++|++|++++|.++..... 
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~------------------------l~~~~~~L~~L~Ls~N~i~~~~~~~  215 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKF------------------------LASIPASVTSLDLSANLLGLKSYAE  215 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHH------------------------HHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHH------------------------HHhCCCCCCEEECCCCCCChhHHHH
Confidence             112222 44444444444444333222211                        1123 5899999999999874332 


Q ss_pred             ---hHHHhhCCCcEEEccCCcccccCc----cccCCCcccCeeeccCcccccc-------cccccCCCCCccEEECCCCC
Q psy11648        458 ---FLQTFADSLRKLYLDFNEIKHLDA----TAFGNLDVLELLSLEHNNIAVV-------VKRTFIGMPNLQIIDLSFNE  523 (584)
Q Consensus       458 ---~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~-------~~~~~~~~~~L~~L~ls~n~  523 (584)
                         .+...+++|++|++++|.+.+...    ..+..+++|++|++++|.+...       ++..+..+++|+.|++++|+
T Consensus       216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence               333333699999999999987654    3457789999999999984432       33467889999999999999


Q ss_pred             CCCcCc
Q psy11648        524 ISMLTG  529 (584)
Q Consensus       524 i~~~~~  529 (584)
                      +.+..+
T Consensus       296 l~~~~~  301 (362)
T 3goz_A          296 IHPSHS  301 (362)
T ss_dssp             CCGGGC
T ss_pred             CCCcch
Confidence            886533

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2.4e-21  Score=187.52  Aligned_cols=210  Identities=18%  Similarity=0.117  Sum_probs=115.9

Q ss_pred             cCCccEEEcCCCcccccccccc--cCCCCCcEEEccCCcCCCcCh----hhhccCcCCCEEeccCCCCCccCCccCCCCC
Q psy11648        314 HKRLKEIRLSNNYLELIESDTF--YNLKELNTITLSYNLLKSIKT----TSFKNLNNMLNIVLSFNQIKYIYPNAFVNLP  387 (584)
Q Consensus       314 ~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  387 (584)
                      .++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3456666666666665555544  556666666666666554322    2223455666666666666555555555556


Q ss_pred             CCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCc
Q psy11648        388 NLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLR  467 (584)
Q Consensus       388 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~  467 (584)
                      +|++|++++|.+.+...  +                      +.......+++|++|++++|.++.++....        
T Consensus       170 ~L~~L~Ls~N~l~~~~~--~----------------------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--------  217 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERG--L----------------------MAALCPHKFPAIQNLALRNTGMETPTGVCA--------  217 (310)
T ss_dssp             TCCEEECCSCTTCHHHH--H----------------------HTTSCTTSSCCCCSCBCCSSCCCCHHHHHH--------
T ss_pred             CCCEEECCCCCCccchh--h----------------------hHHHhhhcCCCCCEEECCCCCCCchHHHHH--------
Confidence            66666666555432100  0                      000111124556666666666554432100        


Q ss_pred             EEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCC---CCccEEECCCCCCCCcCcccccCCCCccEEEcC
Q psy11648        468 KLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGM---PNLQIIDLSFNEISMLTGEQFYFSFKLRILNIS  544 (584)
Q Consensus       468 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~  544 (584)
                                    ..+..+++|++|++++|.+.+..|..+..+   ++|++|++++|+++.++.. +.  ++|++|+++
T Consensus       218 --------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-~~--~~L~~L~Ls  280 (310)
T 4glp_A          218 --------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-LP--AKLRVLDLS  280 (310)
T ss_dssp             --------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-CC--SCCSCEECC
T ss_pred             --------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh-hc--CCCCEEECC
Confidence                          012344555555555555555544444444   5777777777777755433 32  677888888


Q ss_pred             CCcCCccCccccCCCCcceEECCCCCCCC
Q psy11648        545 HNRLRSLPRDVFSNTIIEKLDISYNQDKI  573 (584)
Q Consensus       545 ~n~l~~lp~~l~~~~~L~~l~l~~n~l~~  573 (584)
                      +|+|+++|. ...+++|+.|++++|+++.
T Consensus       281 ~N~l~~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          281 SNRLNRAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence            888777764 5666788888888887763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1e-19  Score=170.24  Aligned_cols=178  Identities=24%  Similarity=0.344  Sum_probs=118.0

Q ss_pred             CcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEE
Q psy11648        341 LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN  420 (584)
Q Consensus       341 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~  420 (584)
                      .++++.+++.+..+.. .+  .+.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+.            
T Consensus        16 ~~~l~~~~~~l~~~p~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------   80 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPS-GI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD------------   80 (251)
T ss_dssp             GTEEECTTCCCSSCCS-CC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT------------
T ss_pred             CeEEecCCCCccccCC-CC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc------------
Confidence            4455555555554322 11  13555566666665555555555555666666655555544332222            


Q ss_pred             CCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccc
Q psy11648        421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI  500 (584)
Q Consensus       421 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  500 (584)
                                      .+++|++|++++|.++.++...+..+ ++|++|++++|++.++++..|..+++|++|++++|.+
T Consensus        81 ----------------~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A           81 ----------------DLTELGTLGLANNQLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             ----------------TCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ----------------cCCcCCEEECCCCcccccChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence                            24677777777777777776677776 7788888888777777776677777788888877777


Q ss_pred             ccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648        501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       501 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      .+..+..|..+++|++|++++|+++++++..|..+++|++|++++|.++.
T Consensus       144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            77666667777778888888777777777777777777777777777763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=2.1e-20  Score=180.81  Aligned_cols=230  Identities=16%  Similarity=0.104  Sum_probs=150.8

Q ss_pred             cCCCCCEEEccCccccccccc---cccCCCCCcEEEcccCCCcccccccc--cccccCCccEEEcCCCccccccc----c
Q psy11648        263 NLNTLEWLAMDNNNIKNIRNY---SLYNLTSLNYINLEYNKISKIHNNLF--HFNIHKRLKEIRLSNNYLELIES----D  333 (584)
Q Consensus       263 ~~~~L~~L~l~~~~l~~~~~~---~l~~l~~L~~L~l~~~~l~~i~~~~~--~~~~~~~L~~L~l~~~~~~~~~~----~  333 (584)
                      ....++.+.+.++.++.....   .+..+++|++|++++|.+....+..+  ..  +++|++|++++|.++...+    .
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEAT--GLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCC--CBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhcc--CCCCCEEEeecccccchhhhhHHH
Confidence            444688888888776532110   12234679999999999986555443  44  8999999999999987433    3


Q ss_pred             cccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCcc---C-CccCCCCCCCcEEecCCCCCCCCChhhhcc
Q psy11648        334 TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI---Y-PNAFVNLPNLVKLDLQDNKLKDFNLNVFSN  409 (584)
Q Consensus       334 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  409 (584)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.   . +..+..+++|++|++++|.++..+.... .
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~  218 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA-A  218 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH-H
T ss_pred             HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH-H
Confidence            345789999999999999998888899999999999999987642   1 2234678899999999988764321100 0


Q ss_pred             cccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCC--
Q psy11648        410 ITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNL--  487 (584)
Q Consensus       410 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l--  487 (584)
                                              .+..+++|++|++++|.++..                         .+..+..+  
T Consensus       219 ------------------------l~~~l~~L~~L~Ls~N~l~~~-------------------------~p~~~~~~~~  249 (310)
T 4glp_A          219 ------------------------LAAAGVQPHSLDLSHNSLRAT-------------------------VNPSAPRCMW  249 (310)
T ss_dssp             ------------------------HHHHTCCCSSEECTTSCCCCC-------------------------CCSCCSSCCC
T ss_pred             ------------------------HHhcCCCCCEEECCCCCCCcc-------------------------chhhHHhccC
Confidence                                    001134555566666555543                         22222222  


Q ss_pred             -cccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        488 -DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       488 -~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                       ++|++|++++|.++. +|..+  .++|++|++++|++++++.  +..+++|++|++++|+++
T Consensus       250 ~~~L~~L~Ls~N~l~~-lp~~~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          250 SSALNSLNLSFAGLEQ-VPKGL--PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CTTCCCEECCSSCCCS-CCSCC--CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTS
T ss_pred             cCcCCEEECCCCCCCc-hhhhh--cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCC
Confidence             466666666666652 33333  2566666666666666532  455667777777777665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=1.4e-21  Score=195.65  Aligned_cols=135  Identities=18%  Similarity=0.184  Sum_probs=94.7

Q ss_pred             CcccEEEccCCCCCC--CCh--hhHHHhhCCCcEEEccCCcccc-----cCccccCCCcccCeeeccCcccc----cccc
Q psy11648        439 IYIKSLDLSNNRIQE--VPV--NFLQTFADSLRKLYLDFNEIKH-----LDATAFGNLDVLELLSLEHNNIA----VVVK  505 (584)
Q Consensus       439 ~~L~~L~l~~~~l~~--~~~--~~~~~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~~~----~~~~  505 (584)
                      ++|++|++++|.++.  ++.  ..+..+ ++|++|++++|++..     ..+..+..+++|++|++++|.++    ..++
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~  237 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  237 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence            677777777777762  221  234455 778888888887762     22335677788888888888875    4456


Q ss_pred             cccCCCCCccEEECCCCCCCCc----Ccccc--cCCCCccEEEcCCCcCCc-----cCccc-cCCCCcceEECCCCCCCC
Q psy11648        506 RTFIGMPNLQIIDLSFNEISML----TGEQF--YFSFKLRILNISHNRLRS-----LPRDV-FSNTIIEKLDISYNQDKI  573 (584)
Q Consensus       506 ~~~~~~~~L~~L~ls~n~i~~~----~~~~~--~~~~~L~~L~L~~n~l~~-----lp~~l-~~~~~L~~l~l~~n~l~~  573 (584)
                      ..+..+++|++|++++|++++.    .+..+  ..+++|++|++++|.++.     +|..+ ..+++|+.|++++|+++.
T Consensus       238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            6777888888888888888754    23444  237888888888888886     77777 346888888888888874


Q ss_pred             C
Q psy11648        574 R  574 (584)
Q Consensus       574 ~  574 (584)
                      .
T Consensus       318 ~  318 (386)
T 2ca6_A          318 E  318 (386)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=1.7e-21  Score=195.03  Aligned_cols=252  Identities=16%  Similarity=0.191  Sum_probs=121.2

Q ss_pred             ccceeeeecCCceeecCCc----cccccccceeeEEEecCcccc----cccccc------cccccccceeeeecCCCcee
Q psy11648         44 SKLRELEITGKDLKFIDPS----AFDNIDACYDLTLKITNTQIE----ELPSGL------FDKIENIEQMTLDLSHNKLS  109 (584)
Q Consensus        44 ~~L~~L~ls~n~~~~~~~~----~~~~~~~~L~~~L~ls~n~i~----~l~~~~------~~~~~~L~~~~L~ls~~~l~  109 (584)
                      ++|++|++++|.+......    .+..+ ++|+ +|++++|.+.    .+|.++      +..+.+|+  +|+|++|.++
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~-~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~--~L~Ls~n~l~  107 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASK-KDLE-IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH--TVRLSDNAFG  107 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTC-TTCC-EEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC--EEECCSCCCC
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhC-CCcc-EEeCcccccCccccchhHHHHHHHHHHhhCCccc--EEECCCCcCC
Confidence            4455555555544443222    23343 5566 6666665433    223222      12334466  6666666655


Q ss_pred             eechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccC
Q psy11648        110 VLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSN  189 (584)
Q Consensus       110 ~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  189 (584)
                      +....               .+|..+..+++|++|++++|.++...+..+......+....            +.+..++
T Consensus       108 ~~~~~---------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~------------~~~~~~~  160 (386)
T 2ca6_A          108 PTAQE---------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK------------KAKNAPP  160 (386)
T ss_dssp             TTTHH---------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHH------------HHHTCCC
T ss_pred             HHHHH---------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhh------------hcccCCC
Confidence            43222               12233455566666666666655444443333322111000            0011155


Q ss_pred             CcEEEcCCCcccc-cch---hhhcCCCCCCEEEcCCCccceee---cCCccccccccceEEeecccccCC---CCchhhH
Q psy11648        190 LETLLLRCNKITD-LNG---NLFRHLYNLQELSLSFNKLQIIE---LNSNVFDVFEKLQLLEISFSLFNS---NEFPYYI  259 (584)
Q Consensus       190 L~~L~l~~~~~~~-~~~---~~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~~l~~L~~L~l~~~~~~~---~~l~~~~  259 (584)
                      |++|++++|.++. ..+   ..+..+++|++|++++|.+...+   ..+..+..+++|+.|++++|.+.+   ..++..+
T Consensus       161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l  240 (386)
T 2ca6_A          161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  240 (386)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence            6666666665542 111   24445556666666666554110   012245555666666666665421   1234433


Q ss_pred             hhhcCCCCCEEEccCcccccc----ccccc--cCCCCCcEEEcccCCCcc-----cccccccccccCCccEEEcCCCccc
Q psy11648        260 LNKNLNTLEWLAMDNNNIKNI----RNYSL--YNLTSLNYINLEYNKISK-----IHNNLFHFNIHKRLKEIRLSNNYLE  328 (584)
Q Consensus       260 ~~~~~~~L~~L~l~~~~l~~~----~~~~l--~~l~~L~~L~l~~~~l~~-----i~~~~~~~~~~~~L~~L~l~~~~~~  328 (584)
                        ..+++|++|++++|.++..    .+..+  ..+++|++|++++|.++.     ++..++..  +++|+.|++++|.++
T Consensus       241 --~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~--l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          241 --KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK--MPDLLFLELNGNRFS  316 (386)
T ss_dssp             --GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH--CTTCCEEECTTSBSC
T ss_pred             --ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc--CCCceEEEccCCcCC
Confidence              4566666666666666543    12233  226666666666666664     44433232  566666666666666


Q ss_pred             cc
Q psy11648        329 LI  330 (584)
Q Consensus       329 ~~  330 (584)
                      ..
T Consensus       317 ~~  318 (386)
T 2ca6_A          317 EE  318 (386)
T ss_dssp             TT
T ss_pred             cc
Confidence            44

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=1.1e-19  Score=175.23  Aligned_cols=210  Identities=20%  Similarity=0.290  Sum_probs=150.5

Q ss_pred             ccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcC
Q psy11648        272 MDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLL  351 (584)
Q Consensus       272 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  351 (584)
                      +..+.++...  ....+++|++|+++++.+..++.  +..  +++|+.|++++|.++...+  +..+++|++|++++|.+
T Consensus        26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~~--~~~--l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l   97 (308)
T 1h6u_A           26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQY--LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (308)
T ss_dssp             TTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCTT--GGG--CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             hCCCCcCcee--cHHHcCCcCEEEeeCCCccCchh--hhc--cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence            3444444332  24456778888888887776652  222  6777777777777766544  66677777777777776


Q ss_pred             CCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccc
Q psy11648        352 KSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE  431 (584)
Q Consensus       352 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~  431 (584)
                      .+.  ..+..+++|+.|++++|.+++..  .+..+++|++|++++|.+++..                           .
T Consensus        98 ~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~---------------------------~  146 (308)
T 1h6u_A           98 KNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS---------------------------P  146 (308)
T ss_dssp             SCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG---------------------------G
T ss_pred             CCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCc---------------------------c
Confidence            654  24556666666666666666542  2556666666666666655432                           2


Q ss_pred             cccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCC
Q psy11648        432 NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGM  511 (584)
Q Consensus       432 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  511 (584)
                         ...+++|+.|++++|.+++++.  +..+ ++|++|++++|++.+.++  +..+++|++|++++|.+.+..+  +..+
T Consensus       147 ---l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l  216 (308)
T 1h6u_A          147 ---LAGLTNLQYLSIGNAQVSDLTP--LANL-SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT  216 (308)
T ss_dssp             ---GGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred             ---ccCCCCccEEEccCCcCCCChh--hcCC-CCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCC
Confidence               2236889999999999988775  7777 999999999999988765  7889999999999999988764  8999


Q ss_pred             CCccEEECCCCCCCCcCcc
Q psy11648        512 PNLQIIDLSFNEISMLTGE  530 (584)
Q Consensus       512 ~~L~~L~ls~n~i~~~~~~  530 (584)
                      ++|+.|++++|++++.+..
T Consensus       217 ~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          217 SNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             TTCCEEEEEEEEEECCCEE
T ss_pred             CCCCEEEccCCeeecCCee
Confidence            9999999999999876543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.7e-19  Score=177.46  Aligned_cols=238  Identities=21%  Similarity=0.249  Sum_probs=123.8

Q ss_pred             EEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCC-cChhhhccCcCCCE-Eec
Q psy11648        293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS-IKTTSFKNLNNMLN-IVL  370 (584)
Q Consensus       293 ~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~-L~l  370 (584)
                      +++.+++.++.+|..+     .+++++|++++|.++.+.+..|.++++|++|++++|.+.+ +....|.+++++.. +.+
T Consensus        13 ~v~C~~~~Lt~iP~~l-----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL-----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EEEEESTTCCSCCTTC-----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             EEEecCCCCCccCcCc-----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            4455555555555432     2345555555555555544455555666666666665543 22334555555544 344


Q ss_pred             cCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC-CccccccccccccccCcccEEEccCC
Q psy11648        371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN-NYITNLYENDKKQAPIYIKSLDLSNN  449 (584)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~~  449 (584)
                      ..|.+..+.+.++..+++|++|++++|.+...+...+..   ...+..+++.+ +.+..++...+......++.|++++|
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~---~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH---SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCC---BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcc---cchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence            455666665666666666666666666665544332211   12333344322 23333333322222345666666666


Q ss_pred             CCCCCChhhHHHhhCCCcEEEccC-CcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCC-CCCCc
Q psy11648        450 RIQEVPVNFLQTFADSLRKLYLDF-NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN-EISML  527 (584)
Q Consensus       450 ~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n-~i~~~  527 (584)
                      .++.++...+..  .+|+++++.+ |.++.++..+|.++++|++||+++|.++.+.+..   +.+|+.|.+.++ .++.+
T Consensus       165 ~i~~i~~~~f~~--~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~l  239 (350)
T 4ay9_X          165 GIQEIHNSAFNG--TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKL  239 (350)
T ss_dssp             CCCEECTTSSTT--EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCC
T ss_pred             cccCCChhhccc--cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcC
Confidence            666666555543  4566666653 4555665566666666666666666666544333   333444443332 23343


Q ss_pred             CcccccCCCCccEEEcCC
Q psy11648        528 TGEQFYFSFKLRILNISH  545 (584)
Q Consensus       528 ~~~~~~~~~~L~~L~L~~  545 (584)
                      ++  +..+++|+.+++.+
T Consensus       240 P~--l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          240 PT--LEKLVALMEASLTY  255 (350)
T ss_dssp             CC--TTTCCSCCEEECSC
T ss_pred             CC--chhCcChhhCcCCC
Confidence            32  45566666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=4e-19  Score=166.19  Aligned_cols=181  Identities=25%  Similarity=0.397  Sum_probs=149.0

Q ss_pred             CCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEec
Q psy11648        315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL  394 (584)
Q Consensus       315 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  394 (584)
                      ...++++++++.++.++.. +  .+.++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4567888888888876543 2  257889999999988888878888899999999999988887777888899999999


Q ss_pred             CCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCC
Q psy11648        395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN  474 (584)
Q Consensus       395 ~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n  474 (584)
                      ++|.+++.++..+..                            +++|++|++++|.++.++...+..+ ++|++|++++|
T Consensus        91 ~~n~l~~~~~~~~~~----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N  141 (251)
T 3m19_A           91 ANNQLASLPLGVFDH----------------------------LTQLDKLYLGGNQLKSLPSGVFDRL-TKLKELRLNTN  141 (251)
T ss_dssp             TTSCCCCCCTTTTTT----------------------------CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSS
T ss_pred             CCCcccccChhHhcc----------------------------cCCCCEEEcCCCcCCCcChhHhccC-CcccEEECcCC
Confidence            998887665444332                            4788888888888888887777777 88999999999


Q ss_pred             cccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCc
Q psy11648        475 EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISML  527 (584)
Q Consensus       475 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  527 (584)
                      ++.++++..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++...
T Consensus       142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            98888887888889999999999998888777888899999999999988754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=1.3e-20  Score=184.97  Aligned_cols=105  Identities=21%  Similarity=0.209  Sum_probs=51.1

Q ss_pred             cccEEEccCCC--CC--CCChhhHHHhhCCCcEEEccCCc-ccccCccccCCCcccCeeeccCcc-cccccccccCCCCC
Q psy11648        440 YIKSLDLSNNR--IQ--EVPVNFLQTFADSLRKLYLDFNE-IKHLDATAFGNLDVLELLSLEHNN-IAVVVKRTFIGMPN  513 (584)
Q Consensus       440 ~L~~L~l~~~~--l~--~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~  513 (584)
                      +|++|++++|.  ++  .++ ..+..+ ++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++
T Consensus       196 ~L~~L~l~~~~~~~~~~~l~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKSDLS-TLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             TCCEEECCSCGGGSCHHHHH-HHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             CCCEEEeCCCcccCCHHHHH-HHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            55556665552  22  122 233444 566666666665 444444455555666666666653 32222224555666


Q ss_pred             ccEEECCCCCCCCcCcccccCC-CCccEEEcCCCcCCc
Q psy11648        514 LQIIDLSFNEISMLTGEQFYFS-FKLRILNISHNRLRS  550 (584)
Q Consensus       514 L~~L~ls~n~i~~~~~~~~~~~-~~L~~L~L~~n~l~~  550 (584)
                      |+.|++++| ++.   +.+..+ ..++.|++++|++++
T Consensus       274 L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          274 LKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             CCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCC
T ss_pred             CCEEeccCc-cCH---HHHHHHHhhCcceEEecccCcc
Confidence            666666665 322   122222 124444456666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=1e-19  Score=178.60  Aligned_cols=255  Identities=17%  Similarity=0.145  Sum_probs=167.0

Q ss_pred             cCCcEEEcCCCcccccchhhhcCC--CCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCC-chhhHhhhcC
Q psy11648        188 SNLETLLLRCNKITDLNGNLFRHL--YNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNE-FPYYILNKNL  264 (584)
Q Consensus       188 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-l~~~~~~~~~  264 (584)
                      ..++.++++++.+.   +..+..+  ++++.++++++.+.+.  .+ .+..+++|++|++++|.+. +. ++..+  ..+
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~--~~-~~~~~~~L~~L~L~~~~l~-~~~~~~~~--~~~  117 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP--LA-EHFSPFRVQHMDLSNSVIE-VSTLHGIL--SQC  117 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC--CC-SCCCCBCCCEEECTTCEEC-HHHHHHHH--TTB
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCcccccc--ch-hhccCCCCCEEEccCCCcC-HHHHHHHH--hhC
Confidence            34788999988766   3456666  7899999999887765  33 3556889999999998875 33 55544  788


Q ss_pred             CCCCEEEccCccccccccccccCCCCCcEEEcccC-CCcc--cccccccccccCCccEEEcCCC-ccccc-ccccccCCC
Q psy11648        265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYN-KISK--IHNNLFHFNIHKRLKEIRLSNN-YLELI-ESDTFYNLK  339 (584)
Q Consensus       265 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~--i~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~  339 (584)
                      ++|++|++++|.++...+..+..+++|++|++++| .++.  ++.. +..  +++|++|++++| .++.. .+..+..++
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSS--CSRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHH--CTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-Hhc--CCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence            99999999999888666667888899999999988 5653  3322 222  778888888888 77653 244456677


Q ss_pred             -CCcEEEccCC--cCC-CcChhhhccCcCCCEEeccCCC-CCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCC
Q psy11648        340 -ELNTITLSYN--LLK-SIKTTSFKNLNNMLNIVLSFNQ-IKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQ  414 (584)
Q Consensus       340 -~L~~L~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~  414 (584)
                       +|++|++++|  .++ +..+..+..+++|+.|++++|. +++..+..+..+++|++|++++|.  ...+..+..+    
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l----  268 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLEL----  268 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGG----
T ss_pred             cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHH----
Confidence             7788888777  344 2334455567777777777776 555445566667777777777764  2222211111    


Q ss_pred             CCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccC
Q psy11648        415 TPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFG  485 (584)
Q Consensus       415 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  485 (584)
                                           ..+++|+.|++++|    ++...+..+..++..|++++|++++..+..++
T Consensus       269 ---------------------~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          269 ---------------------GEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             ---------------------GGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             ---------------------hcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence                                 12567777777776    33334444423455666666666665554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=5.8e-19  Score=173.72  Aligned_cols=240  Identities=20%  Similarity=0.219  Sum_probs=136.6

Q ss_pred             EEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCc-ccccccccccccCCccE-
Q psy11648        242 LLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKIS-KIHNNLFHFNIHKRLKE-  319 (584)
Q Consensus       242 ~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~-~i~~~~~~~~~~~~L~~-  319 (584)
                      +++.+++.++  .+|..+    .+++++|++++|.++.+++.+|.++++|++|++++|++. .++...|..  ++++.+ 
T Consensus        13 ~v~C~~~~Lt--~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~--L~~l~~~   84 (350)
T 4ay9_X           13 VFLCQESKVT--EIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN--LPKLHEI   84 (350)
T ss_dssp             EEEEESTTCC--SCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS--CTTCCEE
T ss_pred             EEEecCCCCC--ccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc--chhhhhh
Confidence            4455555543  455332    234555666666555555555555556666666555543 344433333  444433 


Q ss_pred             EEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCC-CC
Q psy11648        320 IRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD-NK  398 (584)
Q Consensus       320 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~  398 (584)
                      +...+|.++.+.+..+..                        +++|+.+++++|.+....+..+.....+..+++.+ +.
T Consensus        85 l~~~~N~l~~l~~~~f~~------------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~  140 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQN------------------------LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN  140 (350)
T ss_dssp             EEEEETTCCEECTTSBCC------------------------CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT
T ss_pred             hcccCCcccccCchhhhh------------------------ccccccccccccccccCCchhhcccchhhhhhhccccc
Confidence            233334444444444444                        44455555544444444333333344444454433 23


Q ss_pred             CCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccC-CCCCCCChhhHHHhhCCCcEEEccCCccc
Q psy11648        399 LKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSN-NRIQEVPVNFLQTFADSLRKLYLDFNEIK  477 (584)
Q Consensus       399 l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~n~l~  477 (584)
                      +..++...|...  ...++.+++++|.++.++...+.  ..+++++++.+ |.++.+|.+.|..+ ++|++|++++|+++
T Consensus       141 i~~l~~~~f~~~--~~~l~~L~L~~N~i~~i~~~~f~--~~~L~~l~l~~~n~l~~i~~~~f~~l-~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          141 IHTIERNSFVGL--SFESVILWLNKNGIQEIHNSAFN--GTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRIH  215 (350)
T ss_dssp             CCEECTTSSTTS--BSSCEEEECCSSCCCEECTTSST--TEEEEEEECTTCTTCCCCCTTTTTTE-ECCSEEECTTSCCC
T ss_pred             cccccccchhhc--chhhhhhccccccccCCChhhcc--ccchhHHhhccCCcccCCCHHHhccC-cccchhhcCCCCcC
Confidence            443333333222  12345566666666555444332  46789999975 67899998899998 99999999999999


Q ss_pred             ccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCC
Q psy11648        478 HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN  522 (584)
Q Consensus       478 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n  522 (584)
                      .+++..|.++   +.|.+.++.-...+| .+..+++|+.++++++
T Consensus       216 ~lp~~~~~~L---~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          216 SLPSYGLENL---KKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCSSSCTTC---CEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             ccChhhhccc---hHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            9987766654   555544443233444 4789999999999865

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=4.5e-18  Score=155.22  Aligned_cols=132  Identities=21%  Similarity=0.350  Sum_probs=69.2

Q ss_pred             cccEEEccCCCCCCCC-hhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEE
Q psy11648        440 YIKSLDLSNNRIQEVP-VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIID  518 (584)
Q Consensus       440 ~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  518 (584)
                      .+++|++++|.++.++ ...|..+ ++|++|++++|++.++++..|.++++|++|++++|.+++..+..|..+++|++|+
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKL-PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCEEEcCCCcCCccCchhhhccC-CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            3445555555555442 2334444 5555555555555555544555555555555555555555544555555555555


Q ss_pred             CCCCCCCCcCcccccCCCCccEEEcCCCcCCcc-CccccCCCCcceEECCCCCCC
Q psy11648        519 LSFNEISMLTGEQFYFSFKLRILNISHNRLRSL-PRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       519 ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~L~~l~l~~n~l~  572 (584)
                      +++|+++++.+..|..+++|++|++++|+++.+ |..+..+++|+.|++++|+++
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            555555555555555555555555555555544 334444455555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=2.7e-18  Score=163.96  Aligned_cols=188  Identities=29%  Similarity=0.348  Sum_probs=125.5

Q ss_pred             EEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC
Q psy11648        344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN  423 (584)
Q Consensus       344 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~  423 (584)
                      +.+..+.+.+..  ....+++|+.|++++|.+...  ..+..+++|++|++++|.+++..+     +..++.|+.|++++
T Consensus        29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-----l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred             HHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc-----cccCCCCCEEECCC
Confidence            344455554432  234678889999998888876  347778899999999998877543     33455777777777


Q ss_pred             CccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccc
Q psy11648        424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV  503 (584)
Q Consensus       424 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  503 (584)
                      |.++..+.   ...+++|++|++++|.++.++  .+..+ ++|+.|++++|++.+.  ..+..+++|++|++++|.+.+.
T Consensus       100 n~l~~~~~---l~~l~~L~~L~L~~n~i~~~~--~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          100 NKVKDLSS---LKDLKKLKSLSLEHNGISDIN--GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             SCCCCGGG---GTTCTTCCEEECTTSCCCCCG--GGGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             CcCCCChh---hccCCCCCEEECCCCcCCCCh--hhcCC-CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence            77766543   334667777777777776653  35555 6777777777776655  3466667777777777777665


Q ss_pred             cccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy11648        504 VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP  552 (584)
Q Consensus       504 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp  552 (584)
                      .+  +..+++|+.|++++|++++++.  +..+++|+.|++++|+++..|
T Consensus       172 ~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          172 VP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred             hh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence            44  6667777777777777766532  566777777777777666544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=5.4e-18  Score=154.66  Aligned_cols=150  Identities=25%  Similarity=0.357  Sum_probs=103.5

Q ss_pred             eEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccC
Q psy11648        418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH  497 (584)
Q Consensus       418 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  497 (584)
                      .++.+++.++.++...    .++++.|++++|.++.++...|..+ ++|++|++++|++..+.+..|.++++|++|++++
T Consensus        15 ~v~c~~~~l~~iP~~l----~~~l~~L~l~~n~i~~i~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNL----PETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             EEECTTSCCSSCCSSC----CTTCCEEECCSSCCCEECTTSSTTC-TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             EEEcCCCCcCcCCCcc----CcCCCEEECCCCcCCCcCHhHhhCC-CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            4444555555444322    2567777777777777666666666 7777777777777777666777777777777777


Q ss_pred             cccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEECCCCCCC
Q psy11648        498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       498 n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~l~~n~l~  572 (584)
                      |.++...+..|..+++|++|++++|+++++++..|..+++|++|+|++|+++.++.. +..+++|+.|++++|++.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            777766666667777777777777777777777777777777777777777776654 444577777777777764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=2.3e-17  Score=170.54  Aligned_cols=177  Identities=19%  Similarity=0.223  Sum_probs=81.7

Q ss_pred             CCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceE
Q psy11648        340 ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNL  419 (584)
Q Consensus       340 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L  419 (584)
                      +++.|++++|.++++ +..+  .++|+.|++++|.++.+ |   ..+++|+.|++++|.+++++.  +..     .|+.|
T Consensus        60 ~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~ip~--l~~-----~L~~L  125 (571)
T 3cvr_A           60 QFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTLPE--LPA-----SLKHL  125 (571)
T ss_dssp             TCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC--CCT-----TCCEE
T ss_pred             CccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCcch--hhc-----CCCEE
Confidence            566666666666553 2222  24566666666666543 2   234566666666666555332  111     44555


Q ss_pred             ECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcc
Q psy11648        420 NLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNN  499 (584)
Q Consensus       420 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  499 (584)
                      ++++|.++.++.     .+++|+.|++++|.++.+|.    .+ ++|++|++++|++++++.  +.  ++|+.|++++|.
T Consensus       126 ~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~----~l-~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          126 DVDNNQLTMLPE-----LPALLEYINADNNQLTMLPE----LP-TSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNL  191 (571)
T ss_dssp             ECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC----CC-TTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSC
T ss_pred             ECCCCcCCCCCC-----cCccccEEeCCCCccCcCCC----cC-CCcCEEECCCCCCCCcch--hh--CCCCEEECcCCC
Confidence            555555544333     13445555555555544442    12 445555555554444332  22  445555555544


Q ss_pred             cccccccccCCCCCc-------cEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        500 IAVVVKRTFIGMPNL-------QIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       500 ~~~~~~~~~~~~~~L-------~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      ++. +|. +..  +|       +.|++++|+++.+++. +..+++|+.|++++|.++
T Consensus       192 L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          192 LES-LPA-VPV--RNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CSS-CCC-CC----------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCC
T ss_pred             CCc-hhh-HHH--hhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCC
Confidence            442 222 222  33       4444444444443322 222444444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=2.9e-17  Score=148.86  Aligned_cols=178  Identities=22%  Similarity=0.284  Sum_probs=88.3

Q ss_pred             EEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccC
Q psy11648        293 YINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSF  372 (584)
Q Consensus       293 ~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  372 (584)
                      .++.+++.++.++...     .++++.|++++|.++...+..+..+++|++|++++|.+.++.+..+..+++|++|++++
T Consensus        11 ~v~c~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI-----PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             EEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEEecCCCccCCCCCC-----CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            3444444444444322     23444555555544444443444455555555555555544444444455555555555


Q ss_pred             CCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCC
Q psy11648        373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ  452 (584)
Q Consensus       373 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~  452 (584)
                      |.+++..+..+..+++|++|++++|.+++.+...+.                            .+++|++|++++|.++
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----------------------------~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD----------------------------KLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------------TCTTCCEEECCSSCCS
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhc----------------------------cCCcCCEEECCCCccc
Confidence            555544444444555555555555554443322211                            1355556666665555


Q ss_pred             CCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCC
Q psy11648        453 EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGM  511 (584)
Q Consensus       453 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  511 (584)
                      .++...+..+ ++|++|++++|.+.       ..+++|++|+++.|.+++.+|..++.+
T Consensus       138 ~~~~~~~~~l-~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          138 SVPDGVFDRL-TSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             CCCTTTTTTC-TTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             eeCHHHhccC-CCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence            5554445555 56666666665432       234456666666666666555544443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=9.1e-18  Score=165.83  Aligned_cols=156  Identities=31%  Similarity=0.339  Sum_probs=123.6

Q ss_pred             CceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648        416 PMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL  495 (584)
Q Consensus       416 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  495 (584)
                      ++.|++++|.++.++.......+++|+.|++++|.++.++...|..+ ++|++|++++|++..+++..|..+++|++|++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC-CCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            35555555555555444332246888999999998888887778888 89999999999998888888888999999999


Q ss_pred             cCcccccccccccCCCCCccEEECCCCCCCCcCcccc---cCCCCccEEEcCCCcCCccCc-cccCCCC--cceEECCCC
Q psy11648        496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF---YFSFKLRILNISHNRLRSLPR-DVFSNTI--IEKLDISYN  569 (584)
Q Consensus       496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~---~~~~~L~~L~L~~n~l~~lp~-~l~~~~~--L~~l~l~~n  569 (584)
                      ++|.+....+..|..+++|++|++++|+++.+++..|   ..+++|++|+|++|+|+.+|. .+..++.  ++.|++++|
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            9999988888888999999999999999998888777   568899999999999998875 3444555  488999999


Q ss_pred             CCC
Q psy11648        570 QDK  572 (584)
Q Consensus       570 ~l~  572 (584)
                      ++.
T Consensus       200 ~~~  202 (361)
T 2xot_A          200 PLE  202 (361)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=4.2e-17  Score=147.77  Aligned_cols=174  Identities=18%  Similarity=0.218  Sum_probs=136.1

Q ss_pred             cEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEE
Q psy11648        390 VKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL  469 (584)
Q Consensus       390 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L  469 (584)
                      +.++.+++.++.++...      .+.++.+++++|.++.++... +..+++|++|++++|.++.++...+..+ ++|++|
T Consensus        10 ~~v~c~~~~l~~~p~~~------~~~l~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L   81 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI------PAQTTYLDLETNSLKSLPNGV-FDELTSLTQLYLGGNKLQSLPNGVFNKL-TSLTYL   81 (208)
T ss_dssp             TEEECCSSCCSSCCSCC------CTTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTTTC-TTCCEE
T ss_pred             CEEEecCCCccCCCCCC------CCCCcEEEcCCCccCcCChhh-hcccccCcEEECCCCccCccChhhcCCC-CCcCEE
Confidence            56777777777665332      236788888888888665543 3447888888888888888887777777 888888


Q ss_pred             EccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        470 YLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       470 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      ++++|++.+.++..|..+++|++|++++|.+.+..+..|..+++|++|++++|+++++++..+..+++|++|++++|.+.
T Consensus        82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            88888888877777888888888888888888777777888888888888888888888877888888888888888655


Q ss_pred             ccCccccCCCCcceEECCCCCCC-CCCCC
Q psy11648        550 SLPRDVFSNTIIEKLDISYNQDK-IRPGR  577 (584)
Q Consensus       550 ~lp~~l~~~~~L~~l~l~~n~l~-~~p~~  577 (584)
                      .      .++.|+.|+++.|.++ .+|+.
T Consensus       162 ~------~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          162 C------TCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             C------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred             c------CCCCHHHHHHHHHhCCceeecc
Confidence            2      3467888888888888 67654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=5.8e-18  Score=167.23  Aligned_cols=159  Identities=23%  Similarity=0.327  Sum_probs=140.9

Q ss_pred             ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHH-HhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648        417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQ-TFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL  495 (584)
Q Consensus       417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  495 (584)
                      +.++++++.++.++...    .+.++.|++++|.++.++...+. .+ ++|++|++++|++..+++..|..+++|++|++
T Consensus        21 ~~l~c~~~~l~~iP~~~----~~~l~~L~Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL----PSYTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCSSCCSSC----CTTCSEEECCSSCCCEECTTSSSSCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcCccCccC----CCCCCEEECCCCCCCccChhhhhhcc-cccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            45667777777665533    36799999999999999888787 77 99999999999999999889999999999999


Q ss_pred             cCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc----CCCCcceEECCCCCC
Q psy11648        496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF----SNTIIEKLDISYNQD  571 (584)
Q Consensus       496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~----~~~~L~~l~l~~n~l  571 (584)
                      ++|.+....+..|..+++|++|++++|++.++.+..|..+++|++|+|++|+|+.+|...+    .+++|+.|++++|++
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            9999998888889999999999999999999999999999999999999999999998874    579999999999999


Q ss_pred             CCCCCCCCC
Q psy11648        572 KIRPGRESN  580 (584)
Q Consensus       572 ~~~p~~~~~  580 (584)
                      +.+|...|.
T Consensus       176 ~~l~~~~~~  184 (361)
T 2xot_A          176 KKLPLTDLQ  184 (361)
T ss_dssp             CCCCHHHHH
T ss_pred             CccCHHHhh
Confidence            998865443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=8.3e-18  Score=163.98  Aligned_cols=220  Identities=15%  Similarity=0.217  Sum_probs=141.6

Q ss_pred             CCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCC----CCCCChhhhcccccC
Q psy11648        338 LKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNK----LKDFNLNVFSNITSK  413 (584)
Q Consensus       338 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----l~~~~~~~~~~~~~~  413 (584)
                      |++|+.+.+.. .+..+....|.+|++|+.++++.|.+..+.+.+|..+.++..+......    ...+....|..+   
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~---  175 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG---  175 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES---
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc---
Confidence            67777777766 6666666667777777777777777666666666666666666554421    112222222222   


Q ss_pred             CCCc-eEECCCCccccccccc--cccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCccc
Q psy11648        414 QTPM-NLNLSNNYITNLYEND--KKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL  490 (584)
Q Consensus       414 ~~l~-~L~l~~~~l~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L  490 (584)
                      ..++ .+.+....  .++...  ......++..+.+.+. +.......+...+++|+++++++|++..++..+|.+|.+|
T Consensus       176 ~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L  252 (329)
T 3sb4_A          176 EPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL  252 (329)
T ss_dssp             CCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred             cccceeEEecCCC--cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence            1222 22222110  000000  0012455666666654 2222222233323889999999888888888889999999


Q ss_pred             CeeeccCcccccccccccCCCCCcc-EEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcccc-CCCCcceEEC
Q psy11648        491 ELLSLEHNNIAVVVKRTFIGMPNLQ-IIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVF-SNTIIEKLDI  566 (584)
Q Consensus       491 ~~L~l~~n~~~~~~~~~~~~~~~L~-~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~-~~~~L~~l~l  566 (584)
                      +++++.+| +..+...+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+++++++|+++.|+...+ .+++|+.++.
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            99999887 7777778899999998 999988 7888888889999999999998999988877544 4588888763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=3.5e-17  Score=149.28  Aligned_cols=152  Identities=23%  Similarity=0.360  Sum_probs=118.4

Q ss_pred             EEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEE
Q psy11648        391 KLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLY  470 (584)
Q Consensus       391 ~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~  470 (584)
                      .++++++.++.++...      ...++.|++++|.++.......+..+++|++|++++|.++.++...|..+ ++|++|+
T Consensus        15 ~l~~s~n~l~~iP~~~------~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~   87 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHI------PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA-SGVNEIL   87 (220)
T ss_dssp             EEECCSSCCSSCCSCC------CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEE
T ss_pred             EeEeCCCCcccCccCC------CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCC-CCCCEEE
Confidence            4555555555443221      11235566666666555444444557888999999988888887778888 8899999


Q ss_pred             ccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        471 LDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       471 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      +++|++.+.++..|..+++|++|++++|.+.+..+..|..+++|++|++++|+++++.|..|..+++|++|++++|.++
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            9999998888888888999999999999998888888889999999999999999988888888999999999999876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=4.7e-18  Score=165.72  Aligned_cols=227  Identities=17%  Similarity=0.136  Sum_probs=144.2

Q ss_pred             CCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCE
Q psy11648        288 LTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN  367 (584)
Q Consensus       288 l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  367 (584)
                      +++|+.+++.+ .++.++...|..  +++|+.+++..|.+..+.+..|..+..+..+........               
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~--~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~---------------  161 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKG--CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY---------------  161 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTT--CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH---------------
T ss_pred             cCCCcEEECCc-cccchhHHHhhc--CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh---------------
Confidence            56666666655 555555555554  555555555555555555555555444444443321100               


Q ss_pred             EeccCCCCCccCCccCCCCCCCc-EEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEc
Q psy11648        368 IVLSFNQIKYIYPNAFVNLPNLV-KLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDL  446 (584)
Q Consensus       368 L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l  446 (584)
                           .....+...++..+..|+ .+.+....  ..+...+........+..+.+.+.- ...........+++|+.+++
T Consensus       162 -----~~~~~i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L  233 (329)
T 3sb4_A          162 -----RFKNRWEHFAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDI  233 (329)
T ss_dssp             -----HTSTTTTTSCEEESCCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEEC
T ss_pred             -----hccccccccccccccccceeEEecCCC--cHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEEC
Confidence                 011112223344444554 33333221  1111112111122333444443321 11111111123789999999


Q ss_pred             cCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccC-eeeccCcccccccccccCCCCCccEEECCCCCCC
Q psy11648        447 SNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE-LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEIS  525 (584)
Q Consensus       447 ~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~  525 (584)
                      ++|+++.++...|.++ .+|+++++.+| +..++..+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|+++
T Consensus       234 ~~n~i~~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          234 SKTNATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TTBCCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             CCCCcceecHhhhhCC-CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            9999999999999998 99999999987 8888899999999999 999998 787777889999999999999999999


Q ss_pred             CcCcccccCCCCccEEEc
Q psy11648        526 MLTGEQFYFSFKLRILNI  543 (584)
Q Consensus       526 ~~~~~~~~~~~~L~~L~L  543 (584)
                      .+.+.+|.+|++|+.++.
T Consensus       311 ~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          311 TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECTTTTCTTCCCCEEEC
T ss_pred             ccchhhhcCCcchhhhcc
Confidence            999999999999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=2e-17  Score=173.00  Aligned_cols=191  Identities=30%  Similarity=0.339  Sum_probs=140.9

Q ss_pred             cEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEEC
Q psy11648        342 NTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL  421 (584)
Q Consensus       342 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l  421 (584)
                      ..+.+..+.+.....  +..++.|+.|++++|.+..+  ..+..+++|+.|++++|.+.+.++     +..++.|+.|++
T Consensus        24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~L   94 (605)
T 1m9s_A           24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG-----GGGCTTCCEEEC
T ss_pred             HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh-----hccCCCCCEEEC
Confidence            344555555555432  45678899999999988876  257889999999999999887654     335567888888


Q ss_pred             CCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccc
Q psy11648        422 SNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA  501 (584)
Q Consensus       422 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  501 (584)
                      ++|.+..++   ....+++|+.|++++|.+..++  .+..+ ++|+.|+|++|.+.++  ..+..+++|+.|+|++|.+.
T Consensus        95 s~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l~--~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           95 DENKIKDLS---SLKDLKKLKSLSLEHNGISDIN--GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             CSSCCCCCT---TSTTCTTCCEEECTTSCCCCCG--GGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             cCCCCCCCh---hhccCCCCCEEEecCCCCCCCc--cccCC-CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            888887654   2345678888888888887764  35666 7888888888887766  45677888888888888887


Q ss_pred             cccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy11648        502 VVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPR  553 (584)
Q Consensus       502 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~  553 (584)
                      +..+  +..+++|+.|+|++|++.+++  .+..+++|+.|+|++|+++..|.
T Consensus       167 ~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          167 DIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCC
T ss_pred             Cchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcc
Confidence            7655  777888888888888887763  36778888888888887776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=7.5e-17  Score=153.93  Aligned_cols=195  Identities=26%  Similarity=0.326  Sum_probs=153.7

Q ss_pred             ccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCC
Q psy11648        317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD  396 (584)
Q Consensus       317 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  396 (584)
                      +..+.+....++...  ....++.++.|++++|.+....  .+..+++|+.|++++|.+++..+  +..+++|++|++++
T Consensus        26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            333445555554432  2346788999999999888763  47788999999999999988744  88899999999999


Q ss_pred             CCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcc
Q psy11648        397 NKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEI  476 (584)
Q Consensus       397 ~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l  476 (584)
                      |.+++.+     .+..++.|+.|++++|.++..+.   ...+++|+.|++++|.++.+  ..+..+ ++|++|++++|++
T Consensus       100 n~l~~~~-----~l~~l~~L~~L~L~~n~i~~~~~---l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~N~l  168 (291)
T 1h6t_A          100 NKVKDLS-----SLKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQI  168 (291)
T ss_dssp             SCCCCGG-----GGTTCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCC
T ss_pred             CcCCCCh-----hhccCCCCCEEECCCCcCCCChh---hcCCCCCCEEEccCCcCCcc--hhhccC-CCCCEEEccCCcc
Confidence            9987743     24456789999999999887642   34578999999999999887  457777 9999999999999


Q ss_pred             cccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccc
Q psy11648        477 KHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF  532 (584)
Q Consensus       477 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~  532 (584)
                      .+.++  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++...+...+
T Consensus       169 ~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~~~~~~  220 (291)
T 1h6t_A          169 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ  220 (291)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECCCEECC
T ss_pred             ccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCCccccc
Confidence            88765  78899999999999999875  348899999999999999887655433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.1e-16  Score=146.96  Aligned_cols=150  Identities=19%  Similarity=0.263  Sum_probs=101.5

Q ss_pred             ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeecc
Q psy11648        417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE  496 (584)
Q Consensus       417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  496 (584)
                      +.++.+++.++.++...    .+++++|++++|.+..+++..+..+ ++|++|++++|++..+++..|..+++|++|+++
T Consensus        22 ~~v~c~~~~l~~ip~~~----~~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGI----PTNAQILYLHDNQITKLEPGVFDSL-INLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEeEccCCCcCccCCCC----CCCCCEEEcCCCccCccCHHHhhCc-cCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            34444444444444322    2667777777777776665666666 777777777777776666667777777777777


Q ss_pred             CcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEECCCCCCC
Q psy11648        497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       497 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~l~~n~l~  572 (584)
                      +|.++...+..|..+++|++|++++|+++.++ ..+..+++|++|++++|+|+.+|.. +..+++|+.|++++|+++
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            77777666666777777777777777777553 4456677777777777777776653 444577777777777776

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=6.2e-17  Score=145.13  Aligned_cols=150  Identities=18%  Similarity=0.201  Sum_probs=121.4

Q ss_pred             CCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeee
Q psy11648        415 TPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLS  494 (584)
Q Consensus       415 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  494 (584)
                      .++.+++++|.++.++.   ...+++|++|++++|.++.++  .+..+ ++|++|++++|++.+..+..+..+++|++|+
T Consensus        45 ~L~~L~l~~n~i~~l~~---l~~l~~L~~L~l~~n~~~~~~--~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           45 SLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYN--PISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             TCCEEEEESSCCSCCTT---GGGCTTCSEEEEESCCCSCCG--GGTTC-TTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             CccEEeccCCCccChHH---HhcCCCCCEEEccCCCCCcch--hhhcC-CCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            34444444444443331   233688999999999877664  56677 9999999999999887777899999999999


Q ss_pred             ccCcccccccccccCCCCCccEEECCCCC-CCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCC
Q psy11648        495 LEHNNIAVVVKRTFIGMPNLQIIDLSFNE-ISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKI  573 (584)
Q Consensus       495 l~~n~~~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~  573 (584)
                      +++|.+.+..+..+..+++|++|++++|+ ++.++  .+..+++|++|++++|+++.++ .+..+++|+.|++++|++..
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            99999998778889999999999999998 77774  4888999999999999999988 78888999999999999863

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=1.5e-16  Score=146.10  Aligned_cols=140  Identities=26%  Similarity=0.340  Sum_probs=128.9

Q ss_pred             cccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEEC
Q psy11648        440 YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL  519 (584)
Q Consensus       440 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  519 (584)
                      +-+.++.+++.++.+|...    +++|++|++++|++.++.+..|..+++|++|++++|.+....+..|..+++|+.|++
T Consensus        20 s~~~v~c~~~~l~~ip~~~----~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGI----PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             eCCEeEccCCCcCccCCCC----CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            4678999999999998532    389999999999999998889999999999999999998887778899999999999


Q ss_pred             CCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCCCC
Q psy11648        520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRP  583 (584)
Q Consensus       520 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~~~  583 (584)
                      ++|+++++++..|..+++|++|++++|+|+.+|..+..+++|+.|++++|.++.+|...|..+|
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  159 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS  159 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence            9999999999989999999999999999999999999999999999999999999988887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.70  E-value=1.2e-15  Score=151.61  Aligned_cols=262  Identities=14%  Similarity=0.232  Sum_probs=147.5

Q ss_pred             CCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcE
Q psy11648        264 LNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNT  343 (584)
Q Consensus       264 ~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  343 (584)
                      +..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.++...|..   .+|+.+.+.. .++.+....|.+|++|+.
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~---~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN---STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT---CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC---CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            45555555544 3455555566654 5677766554 56666666653   3566666664 455555566677777777


Q ss_pred             EEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCC
Q psy11648        344 ITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSN  423 (584)
Q Consensus       344 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~  423 (584)
                      +++..|.+..+....|. +.+|+.+.+.. .+..+...+|..|++|+.+++..+ ++.+...+|..              
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~--------------  247 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE--------------  247 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT--------------
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc--------------
Confidence            77776666665555555 46777777763 366666667777777777777653 34444333332              


Q ss_pred             CccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCccc-----ccCccccCCCcccCeeeccCc
Q psy11648        424 NYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK-----HLDATAFGNLDVLELLSLEHN  498 (584)
Q Consensus       424 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n  498 (584)
                                     .+|+.+.+. +.++.++...|.++ ++|+.+.+.++.+.     .+...+|.+|++|+.+++.+ 
T Consensus       248 ---------------~~L~~i~lp-~~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-  309 (401)
T 4fdw_A          248 ---------------SGITTVKLP-NGVTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-  309 (401)
T ss_dssp             ---------------CCCSEEEEE-TTCCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred             ---------------CCccEEEeC-CCccEEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence                           234444442 23444444555554 55555555554433     34445566666666666652 


Q ss_pred             ccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccC-C-CCcceEECCCC
Q psy11648        499 NIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS-N-TIIEKLDISYN  569 (584)
Q Consensus       499 ~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~-~-~~L~~l~l~~n  569 (584)
                      .+..+...+|.+|++|+.+.+.. .++.+...+|.+| +|+.+++.+|.+..++...+. + ..++.|.+..+
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            34444445566666666666643 3555555566666 666666666655555444333 2 34555555444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=1.4e-16  Score=145.21  Aligned_cols=111  Identities=27%  Similarity=0.358  Sum_probs=63.8

Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII  517 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  517 (584)
                      +++|+.|++++|.++.+.+..|.++ ++|++|++++|++..+++..|.++++|++|++++|.+.+..+..|..+++|++|
T Consensus        55 l~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  133 (220)
T 2v9t_B           55 YKKLRRIDLSNNQISELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL  133 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCCcCHHHhhCC-cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence            3455555555555555444455555 555555555555555555555555666666666666655555555566666666


Q ss_pred             ECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      ++++|+++++++..|..+++|++|++++|.+.
T Consensus       134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66666666655555555666666666666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=1.3e-15  Score=151.52  Aligned_cols=253  Identities=17%  Similarity=0.227  Sum_probs=172.2

Q ss_pred             CCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCE
Q psy11648        288 LTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN  367 (584)
Q Consensus       288 l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  367 (584)
                      +..++.+.+.+ .++.++...|..  + +|+.+.+..+ ++.+....|.++ .|+.+.+.. .+..+....|.+|++|+.
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~--~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRN--S-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTT--C-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             cCCccEEEECC-ccCEehHhhccc--C-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            35566666543 355566655553  2 4666665544 444444445443 355555543 333333344445555555


Q ss_pred             EeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEcc
Q psy11648        368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS  447 (584)
Q Consensus       368 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  447 (584)
                      +++..+.++.+...+|. +.+|+.+.+..+                            ++.+... .+..|++|+.+++.
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~----------------------------l~~I~~~-aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT----------------------------LKEIGSQ-AFLKTSQLKTIEIP  234 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT----------------------------CCEECTT-TTTTCTTCCCEECC
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc----------------------------hheehhh-HhhCCCCCCEEecC
Confidence            55554444444333333 344444444322                            3333222 23346888999988


Q ss_pred             CCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccc-----cccccccCCCCCccEEECCCC
Q psy11648        448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIA-----VVVKRTFIGMPNLQIIDLSFN  522 (584)
Q Consensus       448 ~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~ls~n  522 (584)
                      .+ ++.++...|.+  .+|+.+.+. +.+..+...+|.+|++|+.+++.++.+.     .....+|.+|++|+.+++. +
T Consensus       235 ~~-l~~I~~~aF~~--~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~  309 (401)
T 4fdw_A          235 EN-VSTIGQEAFRE--SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E  309 (401)
T ss_dssp             TT-CCEECTTTTTT--CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred             CC-ccCcccccccc--CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence            64 67788788887  789999994 5678888889999999999999988765     4566789999999999999 5


Q ss_pred             CCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCCCCCCCCCCCCC
Q psy11648        523 EISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDKIRPGRESNPRP  583 (584)
Q Consensus       523 ~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~~~p~~~~~~~~  583 (584)
                      .+..+...+|.+|++|+.+.+.++ ++.|+...+...+|+.+++++|....++...|..+|
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFP  369 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSC
T ss_pred             ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCcccccccccCCC
Confidence            699999999999999999999655 787776555544999999999999999999998775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.68  E-value=1.5e-15  Score=151.79  Aligned_cols=329  Identities=17%  Similarity=0.233  Sum_probs=202.2

Q ss_pred             chhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHh
Q psy11648        181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYIL  260 (584)
Q Consensus       181 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~  260 (584)
                      .+|. .|.+|+.+.+.. .++.+...+|.+|++|+.+++..+ +..+  ...+|..+.+|+.+.+..+.   ..+....|
T Consensus        65 ~AF~-~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I--~~~aF~~c~~L~~i~~p~~l---~~i~~~aF  136 (394)
T 4fs7_A           65 AAFQ-GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMI--GRCTFSGCYALKSILLPLML---KSIGVEAF  136 (394)
T ss_dssp             TTTT-TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEE--CTTTTTTCTTCCCCCCCTTC---CEECTTTT
T ss_pred             HHhh-CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEc--cchhhcccccchhhcccCce---eeecceee
Confidence            3444 677788888864 366666677888888888888654 5555  56677777777777665442   23444444


Q ss_pred             hhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCC
Q psy11648        261 NKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKE  340 (584)
Q Consensus       261 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  340 (584)
                       ..+..++......  ...+...+|..+.+|+.+.+.++ +..++...|..  +.+|+.+.+..+ ++......+.++..
T Consensus       137 -~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~--c~~L~~i~l~~~-~~~I~~~~F~~~~~  209 (394)
T 4fs7_A          137 -KGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSG--CGKLKSIKLPRN-LKIIRDYCFAECIL  209 (394)
T ss_dssp             -TTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT--CTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred             -ecccccccccCcc--ccccchhhhcccCCCcEEecCCc-cceeccccccC--CCCceEEEcCCC-ceEeCchhhccccc
Confidence             4454333332222  23334456777888888887544 45666666665  777777777655 55555566777777


Q ss_pred             CcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEE
Q psy11648        341 LNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLN  420 (584)
Q Consensus       341 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~  420 (584)
                      |+.+.+..+... + .........|+.+.+.. .++.+...++..+..++.+.+..+. ..+....|             
T Consensus       210 L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F-------------  272 (394)
T 4fs7_A          210 LENMEFPNSLYY-L-GDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNK-LRIGGSLF-------------  272 (394)
T ss_dssp             CCBCCCCTTCCE-E-CTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTT-CEECSCTT-------------
T ss_pred             cceeecCCCceE-e-ehhhcccCCCceEEECC-CceecccccccccccceeEEcCCCc-ceeecccc-------------
Confidence            777766554221 1 11222345677776653 2344445566677777777765542 11222222             


Q ss_pred             CCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccc
Q psy11648        421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNI  500 (584)
Q Consensus       421 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  500 (584)
                                     ..+..++.+......   ++...|..+ .+|+.+.+..+ +..+...+|.+|.+|+.+++..+ +
T Consensus       273 ---------------~~~~~l~~~~~~~~~---i~~~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v  331 (394)
T 4fs7_A          273 ---------------YNCSGLKKVIYGSVI---VPEKTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V  331 (394)
T ss_dssp             ---------------TTCTTCCEEEECSSE---ECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred             ---------------ccccccceeccCcee---ecccccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCc-c
Confidence                           224555555554432   333455555 77777777643 55666677778888888888643 5


Q ss_pred             ccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceE
Q psy11648        501 AVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKL  564 (584)
Q Consensus       501 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l  564 (584)
                      +.+...+|.+|.+|+.+++..+ ++.+...+|.+|++|+++++.++ ++.+...+..|++|+.+
T Consensus       332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence            5555667888888888888765 77777778888888888888654 44455666777777764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=3.1e-17  Score=154.00  Aligned_cols=107  Identities=22%  Similarity=0.332  Sum_probs=74.3

Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII  517 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  517 (584)
                      +++|++|++++|.++.++...  .  ++|++|++++|++.+.+  .+..+++|++|++++|.+++.  ..+..+++|++|
T Consensus        84 l~~L~~L~L~~N~l~~l~~~~--~--~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L  155 (263)
T 1xeu_A           84 LTKLEELSVNRNRLKNLNGIP--S--ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVL  155 (263)
T ss_dssp             CSSCCEEECCSSCCSCCTTCC--C--SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCccCCcCccc--c--CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC--hHHccCCCCCEE
Confidence            567777777777777665321  1  67777777777777653  466777777777777777765  256777777777


Q ss_pred             ECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc
Q psy11648        518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD  554 (584)
Q Consensus       518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~  554 (584)
                      ++++|++.++  ..+..+++|+.|++++|+++..|..
T Consensus       156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~  190 (263)
T 1xeu_A          156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVK  190 (263)
T ss_dssp             ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred             ECCCCcCcch--HHhccCCCCCEEeCCCCcccCCccc
Confidence            7777777766  4466777777777777777765543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=1.2e-15  Score=157.72  Aligned_cols=184  Identities=21%  Similarity=0.257  Sum_probs=80.3

Q ss_pred             CccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecC
Q psy11648        316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ  395 (584)
Q Consensus       316 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  395 (584)
                      +++.|++++|.++++... +  .++|+.|++++|.++.+.    ..+++|+.|++++|.++++ |. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~-l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDN-L--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSC-C--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHh-H--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence            444555555544443221 1  134555555555444332    2234455555555554443 22 222  45555555


Q ss_pred             CCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCc
Q psy11648        396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNE  475 (584)
Q Consensus       396 ~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~  475 (584)
                      +|.+++++.       .++.|+.|++++|.++.++.     .+++|+.|++++|.++.+|.  +.   ++|+.|++++|+
T Consensus       129 ~N~l~~lp~-------~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~--l~---~~L~~L~Ls~N~  191 (571)
T 3cvr_A          129 NNQLTMLPE-------LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE--LP---ESLEALDVSTNL  191 (571)
T ss_dssp             SSCCSCCCC-------CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CC---TTCCEEECCSSC
T ss_pred             CCcCCCCCC-------cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcch--hh---CCCCEEECcCCC
Confidence            555444322       12344555555555444332     13445555555555544443  21   445555555555


Q ss_pred             ccccCccccCCCccc-------CeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccc
Q psy11648        476 IKHLDATAFGNLDVL-------ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF  532 (584)
Q Consensus       476 l~~~~~~~l~~l~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~  532 (584)
                      ++.++.  +..  +|       +.|++++|.++. +|..+..+++|+.|++++|++++..|..+
T Consensus       192 L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          192 LESLPA--VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CSSCCC--CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             CCchhh--HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            443332  221  33       555555555443 23333335555555555555544444333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=6.4e-16  Score=161.69  Aligned_cols=206  Identities=24%  Similarity=0.293  Sum_probs=165.2

Q ss_pred             CCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEec
Q psy11648        315 KRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDL  394 (584)
Q Consensus       315 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  394 (584)
                      ..+..+.+..+.+....+  +..++.|+.|++++|.+....  .+..+++|+.|++++|.+.+..+  +..+++|+.|++
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            344455566666555432  456788999999999988763  57889999999999999998744  889999999999


Q ss_pred             CCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCC
Q psy11648        395 QDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN  474 (584)
Q Consensus       395 ~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n  474 (584)
                      ++|.+.+.+     .+..++.|+.|++++|.+..++.   +..+++|+.|++++|.+..+  ..+..+ ++|+.|+|++|
T Consensus        95 s~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N  163 (605)
T 1m9s_A           95 DENKIKDLS-----SLKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDN  163 (605)
T ss_dssp             CSSCCCCCT-----TSTTCTTCCEEECTTSCCCCCGG---GGGCTTCSEEECCSSCCCCC--GGGGSC-TTCSEEECCSS
T ss_pred             cCCCCCCCh-----hhccCCCCCEEEecCCCCCCCcc---ccCCCccCEEECCCCccCCc--hhhccc-CCCCEEECcCC
Confidence            999988753     34466799999999999987643   44579999999999999887  457777 99999999999


Q ss_pred             cccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEE
Q psy11648        475 EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRIL  541 (584)
Q Consensus       475 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L  541 (584)
                      .+.+.++  +..+++|++|+|++|.+.+.  ..+..+++|+.|++++|++.+.+...+..+..+..+
T Consensus       164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l  226 (605)
T 1m9s_A          164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV  226 (605)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCC
T ss_pred             cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEecccc
Confidence            9988766  88999999999999999876  468999999999999999987765554444443333

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=2.1e-16  Score=137.76  Aligned_cols=136  Identities=21%  Similarity=0.184  Sum_probs=119.7

Q ss_pred             cCcccEEEccCCCCC--CCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCcc
Q psy11648        438 PIYIKSLDLSNNRIQ--EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ  515 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  515 (584)
                      +++++.|++++|.++  .+| ..+..+ ++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~-~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIE-GLTAEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCS-SCCGGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             cccCCEEECCCCCCChhhHH-HHHHhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            478999999999987  776 446777 9999999999998877  6788899999999999999987777788899999


Q ss_pred             EEECCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc----cccCCCCcceEECCCCCCCCCCCC
Q psy11648        516 IIDLSFNEISMLTG-EQFYFSFKLRILNISHNRLRSLPR----DVFSNTIIEKLDISYNQDKIRPGR  577 (584)
Q Consensus       516 ~L~ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~lp~----~l~~~~~L~~l~l~~n~l~~~p~~  577 (584)
                      +|++++|++++++. ..+..+++|++|++++|.++.+|.    .+..+++|+.|++++|.+..+|..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            99999999998754 678899999999999999999887    677789999999999999988865

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=1.2e-14  Score=145.35  Aligned_cols=328  Identities=14%  Similarity=0.170  Sum_probs=210.3

Q ss_pred             hhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCC
Q psy11648        134 REKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYN  213 (584)
Q Consensus       134 ~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  213 (584)
                      +|.+|++|+.+.+..+ ++.++..                        +|. .|++|+.+++..+ ++.+...+|.++..
T Consensus        66 AF~~c~~L~~i~lp~~-i~~I~~~------------------------aF~-~c~~L~~i~lp~~-l~~I~~~aF~~c~~  118 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VREIGEF------------------------AFE-NCSKLEIINIPDS-VKMIGRCTFSGCYA  118 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CCEECTT------------------------TTT-TCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred             HhhCCCCceEEEeCCC-ccCcchh------------------------Hhh-CCCCCcEEEeCCC-ceEccchhhccccc
Confidence            4666777888877654 5665444                        443 6777888887654 55566667777888


Q ss_pred             CCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcE
Q psy11648        214 LQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNY  293 (584)
Q Consensus       214 L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  293 (584)
                      |+.+.+..+ +...  ...+|..+..++.......    ..+....| ..|++|+.+.+.++ +..+...+|..+.+|+.
T Consensus       119 L~~i~~p~~-l~~i--~~~aF~~~~~~~~~~~~~~----~~i~~~aF-~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~  189 (394)
T 4fs7_A          119 LKSILLPLM-LKSI--GVEAFKGCDFKEITIPEGV----TVIGDEAF-ATCESLEYVSLPDS-METLHNGLFSGCGKLKS  189 (394)
T ss_dssp             CCCCCCCTT-CCEE--CTTTTTTCCCSEEECCTTC----CEECTTTT-TTCTTCCEEECCTT-CCEECTTTTTTCTTCCB
T ss_pred             chhhcccCc-eeee--cceeeecccccccccCccc----cccchhhh-cccCCCcEEecCCc-cceeccccccCCCCceE
Confidence            887777644 4444  4556666654444333322    23344445 67888888888654 34455567788888888


Q ss_pred             EEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCC
Q psy11648        294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFN  373 (584)
Q Consensus       294 L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  373 (584)
                      +.+..+ ++.++...|..  +..|+.+.+..+.... . .....+..++.+.+... ...+....+..+..++.+.+..+
T Consensus       190 i~l~~~-~~~I~~~~F~~--~~~L~~i~~~~~~~~i-~-~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          190 IKLPRN-LKIIRDYCFAE--CILLENMEFPNSLYYL-G-DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             CCCCTT-CCEECTTTTTT--CTTCCBCCCCTTCCEE-C-TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred             EEcCCC-ceEeCchhhcc--ccccceeecCCCceEe-e-hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence            887655 66677766666  7777777766553321 1 22334567777777543 23344456777888888888765


Q ss_pred             CCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCC
Q psy11648        374 QIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQE  453 (584)
Q Consensus       374 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~  453 (584)
                      . ..+....+..+..++.+......+.   ...                            +..+.+|+.+.+..+ +..
T Consensus       264 ~-~~i~~~~F~~~~~l~~~~~~~~~i~---~~~----------------------------F~~~~~L~~i~l~~~-i~~  310 (394)
T 4fs7_A          264 K-LRIGGSLFYNCSGLKKVIYGSVIVP---EKT----------------------------FYGCSSLTEVKLLDS-VKF  310 (394)
T ss_dssp             T-CEECSCTTTTCTTCCEEEECSSEEC---TTT----------------------------TTTCTTCCEEEECTT-CCE
T ss_pred             c-ceeeccccccccccceeccCceeec---ccc----------------------------ccccccccccccccc-cce
Confidence            3 3444567778888887776544221   111                            223566777777543 556


Q ss_pred             CChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCccccc
Q psy11648        454 VPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFY  533 (584)
Q Consensus       454 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~  533 (584)
                      ++...|.++ .+|+++++.. .+..+...+|.+|.+|+.+++..+ +..+...+|.+|++|+.+++..+ +..+ ..+|.
T Consensus       311 I~~~aF~~c-~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~  385 (394)
T 4fs7_A          311 IGEEAFESC-TSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFE  385 (394)
T ss_dssp             ECTTTTTTC-TTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBC
T ss_pred             echhhhcCC-CCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh-hheec
Confidence            666677776 7888888864 366677778888888888888765 55566677888888888888653 3333 35677


Q ss_pred             CCCCccEE
Q psy11648        534 FSFKLRIL  541 (584)
Q Consensus       534 ~~~~L~~L  541 (584)
                      +|++|+.+
T Consensus       386 ~c~~L~~I  393 (394)
T 4fs7_A          386 DTTKFKWI  393 (394)
T ss_dssp             TTCEEEEE
T ss_pred             CCCCCcEE
Confidence            88888765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=1.1e-15  Score=136.90  Aligned_cols=134  Identities=12%  Similarity=0.161  Sum_probs=120.9

Q ss_pred             cccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCcc
Q psy11648        436 QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ  515 (584)
Q Consensus       436 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  515 (584)
                      ..+++++.|++++|.++.++  .+..+ ++|++|++++|.+....  .+..+++|++|++++|.+++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34689999999999999887  47777 99999999999776543  678899999999999999987888899999999


Q ss_pred             EEECCCCCCCCcCcccccCCCCccEEEcCCCc-CCccCccccCCCCcceEECCCCCCCCCC
Q psy11648        516 IIDLSFNEISMLTGEQFYFSFKLRILNISHNR-LRSLPRDVFSNTIIEKLDISYNQDKIRP  575 (584)
Q Consensus       516 ~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~-l~~lp~~l~~~~~L~~l~l~~n~l~~~p  575 (584)
                      +|++++|++++..+..+..+++|++|++++|+ ++.+| .+..+++|+.|++++|+++.++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence            99999999998888889999999999999997 88887 6888899999999999999876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=1.7e-15  Score=134.94  Aligned_cols=128  Identities=21%  Similarity=0.353  Sum_probs=85.4

Q ss_pred             ceEECCCCccccccccccccccCcccEEEccCCCCCCCChh-hHHHhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648        417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVN-FLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL  495 (584)
Q Consensus       417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  495 (584)
                      +.++++++.++.++...    ..++++|++++|.++.++.. .+..+ ++|++|++++|++.+..+..|.++++|++|++
T Consensus        11 ~~l~~s~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI----PLHTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCSSCCSCC----CTTCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcCcCccCC----CCCCCEEECCCCcCCccCCccccccC-CCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            56667777666665433    23667777777776666543 35565 67777777777776666666666777777777


Q ss_pred             cCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      ++|.+++..+..|..+++|++|++++|+++++.+..|..+++|++|++++|.++
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            777776666666666777777777777777666666666677777777777666

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.5e-15  Score=132.77  Aligned_cols=127  Identities=28%  Similarity=0.337  Sum_probs=81.3

Q ss_pred             ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeecc
Q psy11648        417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE  496 (584)
Q Consensus       417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  496 (584)
                      +.++++++.++.++...    .++++.|++++|.++.+| ..+..+ ++|++|++++|++..+++..|.++++|++|+++
T Consensus        13 ~~l~~~~~~l~~ip~~~----~~~l~~L~L~~n~i~~ip-~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI----PRDVTELYLDGNQFTLVP-KELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCSSCCSCC----CTTCCEEECCSSCCCSCC-GGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCCcCCCCC----CCCCCEEECCCCcCchhH-HHhhcc-cCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            45666666666655432    246666666666666666 455555 666666666666666666666666666666666


Q ss_pred             CcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       497 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      +|.++...+..|..+++|+.|++++|+++.+++..|..+++|++|++++|.+.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            66666666666666666666666666666666666666666666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=2.8e-18  Score=178.47  Aligned_cols=121  Identities=20%  Similarity=0.216  Sum_probs=86.5

Q ss_pred             cccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEEC
Q psy11648        440 YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL  519 (584)
Q Consensus       440 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  519 (584)
                      .|+.|++++|.++.+|.  +..+ ++|+.|++++|++..+ |..++.+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l-~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQL-LLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGG-TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCCCcC--cccc-ccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            47777777777777763  6666 7777777777777754 3467777777777777777776 34 6777777777777


Q ss_pred             CCCCCCCcC-cccccCCCCccEEEcCCCcCCccCccccC----CCCcceEEC
Q psy11648        520 SFNEISMLT-GEQFYFSFKLRILNISHNRLRSLPRDVFS----NTIIEKLDI  566 (584)
Q Consensus       520 s~n~i~~~~-~~~~~~~~~L~~L~L~~n~l~~lp~~l~~----~~~L~~l~l  566 (584)
                      ++|+++++. |..+..+++|+.|++++|.++++|.....    +++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            777777776 66777777777777777777776654432    467777753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=3.9e-16  Score=146.52  Aligned_cols=170  Identities=20%  Similarity=0.231  Sum_probs=105.4

Q ss_pred             cCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEe
Q psy11648        314 HKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD  393 (584)
Q Consensus       314 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  393 (584)
                      +.++..++++++.++...  .+..+++|+.|++++|.+..+.  .+..+++|+.|++++|.+++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            556666677777777654  3566778888888888777653  56677888888888888777643  77778888888


Q ss_pred             cCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccC
Q psy11648        394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDF  473 (584)
Q Consensus       394 l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~  473 (584)
                      +++|.+++.+...     . ..++.|++++|.+++.+.   ...+++|+.|++++|.+++++  .+..+ ++|++|++++
T Consensus        92 L~~N~l~~l~~~~-----~-~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~~~--~l~~l-~~L~~L~L~~  159 (263)
T 1xeu_A           92 VNRNRLKNLNGIP-----S-ACLSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLKSIV--MLGFL-SKLEVLDLHG  159 (263)
T ss_dssp             CCSSCCSCCTTCC-----C-SSCCEEECCSSCCSBSGG---GTTCTTCCEEECTTSCCCBCG--GGGGC-TTCCEEECTT
T ss_pred             CCCCccCCcCccc-----c-CcccEEEccCCccCCChh---hcCcccccEEECCCCcCCCCh--HHccC-CCCCEEECCC
Confidence            8888777643211     1 455666666666555431   233555666666665555543  34444 5555555555


Q ss_pred             CcccccCccccCCCcccCeeeccCcccccc
Q psy11648        474 NEIKHLDATAFGNLDVLELLSLEHNNIAVV  503 (584)
Q Consensus       474 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  503 (584)
                      |++.+.  ..+..+++|+.|++++|.+...
T Consensus       160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            555544  3445555555555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=7.3e-15  Score=129.12  Aligned_cols=128  Identities=24%  Similarity=0.315  Sum_probs=76.6

Q ss_pred             ccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECC
Q psy11648        441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLS  520 (584)
Q Consensus       441 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls  520 (584)
                      .+.++++++.++.+|...    +++|++|++++|++.+.++..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~~p~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCCCCC----CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            345555555555555321    1556666666666665555555666666666666666665555555666666666666


Q ss_pred             CCCCCCcCcccccCCCCccEEEcCCCcCCccCccc-cCCCCcceEECCCCCCC
Q psy11648        521 FNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV-FSNTIIEKLDISYNQDK  572 (584)
Q Consensus       521 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l-~~~~~L~~l~l~~n~l~  572 (584)
                      +|+++++++..|..+++|++|++++|+++.+|... ..+++|+.|++++|+++
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            66666666655566666666666666666665554 33566666666666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=2.7e-15  Score=133.63  Aligned_cols=130  Identities=21%  Similarity=0.280  Sum_probs=80.5

Q ss_pred             cEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEE
Q psy11648        390 VKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL  469 (584)
Q Consensus       390 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L  469 (584)
                      +.++++++.++.++....      ..++.|++++|.++.++....+..+++|++|++++|.++.+++..+..+ ++|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L   83 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA-SHIQEL   83 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEE
T ss_pred             CEEEcCCCCcCcCccCCC------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc-ccCCEE
Confidence            556666666655543221      1456666666666665554334445666666666666666655556665 666666


Q ss_pred             EccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCC
Q psy11648        470 YLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM  526 (584)
Q Consensus       470 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~  526 (584)
                      ++++|++.+.++..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            666666666666666666666666666666666666666666666666666666653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=2.2e-14  Score=127.58  Aligned_cols=126  Identities=23%  Similarity=0.358  Sum_probs=98.5

Q ss_pred             cEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCC
Q psy11648        442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF  521 (584)
Q Consensus       442 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~  521 (584)
                      +.++++++.++.+|...    ++++++|++++|++..++ ..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~~ip~~~----~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI----PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSCCSCC----CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcCCCCC----CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            56788888888777432    267888888888887655 5677888888888888888877777788888888888888


Q ss_pred             CCCCCcCcccccCCCCccEEEcCCCcCCccCcc-ccCCCCcceEECCCCCCC
Q psy11648        522 NEISMLTGEQFYFSFKLRILNISHNRLRSLPRD-VFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       522 n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~l~l~~n~l~  572 (584)
                      |+++++++..|..+++|++|+|++|+|+.+|.. +..+++|+.|++++|++.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            888888887888888888888888888887775 445688888888888775

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=3.1e-15  Score=127.40  Aligned_cols=127  Identities=22%  Similarity=0.191  Sum_probs=104.3

Q ss_pred             cCcccEEEccCCCCC--CCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCcc
Q psy11648        438 PIYIKSLDLSNNRIQ--EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQ  515 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  515 (584)
                      .++++.|++++|.++  .+| ..+..+ ++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~-~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLE-GLTDEF-EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCC-SCCTTC-TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CccCeEEEccCCcCChhHHH-HHHhhc-CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            477888888888887  566 455666 8899999999988876  5678889999999999998887777777789999


Q ss_pred             EEECCCCCCCCcC-cccccCCCCccEEEcCCCcCCccCc----cccCCCCcceEECCC
Q psy11648        516 IIDLSFNEISMLT-GEQFYFSFKLRILNISHNRLRSLPR----DVFSNTIIEKLDISY  568 (584)
Q Consensus       516 ~L~ls~n~i~~~~-~~~~~~~~~L~~L~L~~n~l~~lp~----~l~~~~~L~~l~l~~  568 (584)
                      +|++++|++++++ +..+..+++|++|++++|+++.+|.    .+..+++|+.|++++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999988864 3668888999999999999988876    566778999998864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=7e-15  Score=129.04  Aligned_cols=132  Identities=22%  Similarity=0.246  Sum_probs=113.2

Q ss_pred             ccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccE
Q psy11648        437 APIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQI  516 (584)
Q Consensus       437 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  516 (584)
                      .+++++.|++++|.++.++ . +..+.++|+.|++++|.+.+.  ..+..+++|++|++++|.++...+..|..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            4688999999999998875 3 444425999999999999877  57889999999999999999876666789999999


Q ss_pred             EECCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCcc----ccCCCCcceEECCCCCCC
Q psy11648        517 IDLSFNEISMLTG-EQFYFSFKLRILNISHNRLRSLPRD----VFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       517 L~ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~lp~~----l~~~~~L~~l~l~~n~l~  572 (584)
                      |++++|+++.+++ ..+..+++|++|++++|.++.+|..    +..+++|+.|++++|...
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999987765 4678899999999999999999875    788899999999999765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=9.6e-15  Score=127.20  Aligned_cols=115  Identities=22%  Similarity=0.172  Sum_probs=84.9

Q ss_pred             ccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccc-ccccCCCCCcc
Q psy11648        437 APIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVV-KRTFIGMPNLQ  515 (584)
Q Consensus       437 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~  515 (584)
                      .+++|+.|++++|.++.+  ..+..+ ++|++|++++|++.+..+..+..+++|++|++++|.+++.. +..+..+++|+
T Consensus        47 ~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           47 EFVNLEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             GGGGCCEEEEESSCCCCC--SSCCCC-SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             hCCCCCEEeCcCCCCCCh--hhhccC-CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            356777777777777665  345555 77777777777777655555666778888888888777643 25677888888


Q ss_pred             EEECCCCCCCCcCc---ccccCCCCccEEEcCCCcCCccCcc
Q psy11648        516 IIDLSFNEISMLTG---EQFYFSFKLRILNISHNRLRSLPRD  554 (584)
Q Consensus       516 ~L~ls~n~i~~~~~---~~~~~~~~L~~L~L~~n~l~~lp~~  554 (584)
                      .|++++|++.++++   ..+..+++|++|++++|.+..+|..
T Consensus       124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            88888888887776   5677888888888888888887754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=6e-16  Score=160.93  Aligned_cols=213  Identities=17%  Similarity=0.149  Sum_probs=150.7

Q ss_pred             cceeeEEEecCcccccccccccccccccceeeeecCCCceeeechhhhccchhccc-ccCceeccchhhcCCccceee-c
Q psy11648         69 ACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQ-HLGTTILKDREKLLSNLETLL-L  146 (584)
Q Consensus        69 ~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~-~n~l~~l~~~l~~~~~L~~L~-l  146 (584)
                      ++|+ .|+|++|+++.+|..+....+ |+  .|++++|....       .+..++. .+.....|..+..+++|+.|+ +
T Consensus       349 ~~L~-~L~Ls~n~L~~Lp~~i~~l~~-L~--~L~l~~n~~l~-------~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l  417 (567)
T 1dce_A          349 EQLF-RCELSVEKSTVLQSELESCKE-LQ--ELEPENKWCLL-------TIILLMRALDPLLYEKETLQYFSTLKAVDPM  417 (567)
T ss_dssp             TTSS-SCCCCHHHHHHHHHHHHHHHH-HH--HHCTTCHHHHH-------HHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             ccce-eccCChhhHHhhHHHHHHHHH-HH--Hhccccchhhh-------hHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence            7899 999999999999998887777 99  99997764211       1111111 222335566778888899998 6


Q ss_pred             cccccccccccccchhhHHHHHhhcC-CCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccc
Q psy11648        147 RCNKITDLNGNLFRHLQKSIVKAKKN-NNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQ  225 (584)
Q Consensus       147 ~~n~i~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  225 (584)
                      +.|.+..+            +.+.++ +.+     ..+  ....|+.|++++|.++.++.  +..+++|+.|++++|.+.
T Consensus       418 ~~n~~~~L------------~~l~l~~n~i-----~~l--~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~  476 (567)
T 1dce_A          418 RAAYLDDL------------RSKFLLENSV-----LKM--EYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR  476 (567)
T ss_dssp             GHHHHHHH------------HHHHHHHHHH-----HHH--HHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC
T ss_pred             hhcccchh------------hhhhhhcccc-----ccc--CccCceEEEecCCCCCCCcC--ccccccCcEeecCccccc
Confidence            76654433            222222 100     011  12468899999999888643  888999999999999887


Q ss_pred             eeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccc-cccccCCCCCcEEEcccCCCccc
Q psy11648        226 IIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIR-NYSLYNLTSLNYINLEYNKISKI  304 (584)
Q Consensus       226 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~i  304 (584)
                      .   +|..+..+++|+.|++++|.+.  .+| .+  ..+++|++|++++|.+++.. +..+..+++|++|++++|.++.+
T Consensus       477 ~---lp~~~~~l~~L~~L~Ls~N~l~--~lp-~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          477 A---LPPALAALRCLEVLQASDNALE--NVD-GV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             C---CCGGGGGCTTCCEEECCSSCCC--CCG-GG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             c---cchhhhcCCCCCEEECCCCCCC--CCc-cc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            4   4778888899999999999886  577 43  78889999999999888885 66788888899999998888877


Q ss_pred             ccccccc-cccCCccEEE
Q psy11648        305 HNNLFHF-NIHKRLKEIR  321 (584)
Q Consensus       305 ~~~~~~~-~~~~~L~~L~  321 (584)
                      ++..... ..+++|+.|+
T Consensus       549 ~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          549 EGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSCTTHHHHHCTTCSEEE
T ss_pred             ccHHHHHHHHCcccCccC
Confidence            6543211 1156666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=4.9e-14  Score=123.83  Aligned_cols=130  Identities=21%  Similarity=0.301  Sum_probs=108.7

Q ss_pred             ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeecc
Q psy11648        417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE  496 (584)
Q Consensus       417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  496 (584)
                      +.++++++.++.++...    .++++.|++++|.++.++...+..+ ++|++|++++|++.++++..|..+++|++|+++
T Consensus        10 ~~l~~~~~~l~~~p~~~----~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TEEECCSSCCSSCCTTC----CTTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCCccCCCCC----CCCCcEEEeCCCcccEeCHHHhcCc-ccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            45556666665554322    3688999999999888887778887 899999999999998888888899999999999


Q ss_pred             CcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCcc
Q psy11648        497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL  551 (584)
Q Consensus       497 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~l  551 (584)
                      +|.+++..+..|..+++|++|++++|+++++++..+..+++|++|++++|.++..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            9999988777788999999999999999998888888899999999999988743

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.52  E-value=1.6e-12  Score=129.90  Aligned_cols=339  Identities=13%  Similarity=0.217  Sum_probs=194.6

Q ss_pred             ccccchhhhcCCC-CCCEEEcCCCccceeecCCccccccccceEEeecccccC-CCCchhhHhhhcCCCCCEEEccCccc
Q psy11648        200 ITDLNGNLFRHLY-NLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN-SNEFPYYILNKNLNTLEWLAMDNNNI  277 (584)
Q Consensus       200 ~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~l~~~~~~~~~~~L~~L~l~~~~l  277 (584)
                      .+.+...+|.++. .|+.+.+... ++.+  ...+|.++.+|+.+.+..+.-. -..+....| ..|.+|+.+.+..+ +
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~I--g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c~~L~~i~~~~~-~  125 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEI--GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-MFCSELTDIPILDS-V  125 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEE--CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-TTCTTCCBCGGGTT-C
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEE--hHHHhhCCccCceEeecCCCCCeeeEechhhc-hhcccceeeccCCc-c
Confidence            3345556777774 5888888754 6666  6677888888888887765311 034555555 66777777666543 4


Q ss_pred             cccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChh
Q psy11648        278 KNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTT  357 (584)
Q Consensus       278 ~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  357 (584)
                      +.+...++..+.+|+.+.+.. .+..++...|..  +..|+.+.+..+ ++......|.. ..|+.+.+..+- ..+...
T Consensus       126 ~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~--c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~  199 (394)
T 4gt6_A          126 TEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSY--CYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTN  199 (394)
T ss_dssp             SEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT--CTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTT
T ss_pred             ceehhhhhhhhcccccccccc-eeeeecccceec--ccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccc
Confidence            555555667777777777643 344555555554  666666666543 33333333432 345555554321 112223


Q ss_pred             hhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccc
Q psy11648        358 SFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA  437 (584)
Q Consensus       358 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~  437 (584)
                      .+..+..++................+.........              +........+..+.+.. .++.+ ....+..
T Consensus       200 af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ip~-~v~~i-~~~aF~~  263 (394)
T 4gt6_A          200 AFSECFALSTITSDSESYPAIDNVLYEKSANGDYA--------------LIRYPSQREDPAFKIPN-GVARI-ETHAFDS  263 (394)
T ss_dssp             TTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE--------------EEECCTTCCCSEEECCT-TEEEE-CTTTTTT
T ss_pred             hhhhccccceecccccccccccceeeccccccccc--------------ccccccccccceEEcCC-cceEc-ccceeee
Confidence            34444444444443322221100000000000000              00001111222233221 11222 1233456


Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII  517 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  517 (584)
                      |..|+.+.+... ...+....|..+ ..|+.+.+. +.+..++..+|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+
T Consensus       264 c~~L~~i~lp~~-~~~I~~~aF~~c-~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          264 CAYLASVKMPDS-VVSIGTGAFMNC-PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             CSSCCEEECCTT-CCEECTTTTTTC-TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccccEEecccc-cceecCcccccc-cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence            788999988754 345666778887 999999996 5677788889999999999999764 555666789999999999


Q ss_pred             ECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                      .+.. .++.+...+|.+|++|+.+++.++... + ..++.+..|+.+.+..|.+.
T Consensus       340 ~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          340 AIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             EECT-TCCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC-----------
T ss_pred             EECc-ccCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCCEE
Confidence            9965 488888899999999999999998543 2 35677889999998877553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.3e-14  Score=123.49  Aligned_cols=112  Identities=18%  Similarity=0.138  Sum_probs=101.3

Q ss_pred             hCCCcEEEccCCccc-ccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEE
Q psy11648        463 ADSLRKLYLDFNEIK-HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRIL  541 (584)
Q Consensus       463 ~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L  541 (584)
                      ++++++|++++|.+. +..+..+..+++|++|++++|.+.+.  ..+..+++|++|++++|++++..|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            378999999999998 45556788999999999999999887  678999999999999999999778878789999999


Q ss_pred             EcCCCcCCccC--ccccCCCCcceEECCCCCCCCCCC
Q psy11648        542 NISHNRLRSLP--RDVFSNTIIEKLDISYNQDKIRPG  576 (584)
Q Consensus       542 ~L~~n~l~~lp--~~l~~~~~L~~l~l~~n~l~~~p~  576 (584)
                      ++++|+++.+|  ..+..+++|+.|++++|+++.+|.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            99999999875  788889999999999999998876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=4.9e-15  Score=159.10  Aligned_cols=187  Identities=19%  Similarity=0.149  Sum_probs=89.2

Q ss_pred             hcccccccccccccccccccceeeeecCCceeec---------CCccccccccceeeEEEecCccccccccccccccccc
Q psy11648         26 QHLGTTILKGDQLQGIFNSKLRELEITGKDLKFI---------DPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENI   96 (584)
Q Consensus        26 ~~Lr~L~l~~~~l~~l~~~~L~~L~ls~n~~~~~---------~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L   96 (584)
                      ..++.|+++++.+..++...++.++|+.+.+.+.         .++.+..+ ..|+ +|+|++|.+..+|..+|.... |
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l-~~L~-~L~Ls~n~l~~l~~~~~~l~~-L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDD-QLWH-ALDLSNLQIFNISANIFKYDF-L  249 (727)
T ss_dssp             -------------------------------------------------CC-CCCC-EEECTTSCCSCCCGGGGGCCS-C
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccC-CCCc-EEECCCCCCCCCChhhcCCCC-C
Confidence            4566667777777776665555566665554442         24455565 6777 888888887777777775555 8


Q ss_pred             ceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCC
Q psy11648         97 EQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNN  176 (584)
Q Consensus        97 ~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~  176 (584)
                      +  +|+|++|.|+.                    +|..+.++++|++|+|++|.++.+                      
T Consensus       250 ~--~L~Ls~N~l~~--------------------lp~~~~~l~~L~~L~Ls~N~l~~l----------------------  285 (727)
T 4b8c_D          250 T--RLYLNGNSLTE--------------------LPAEIKNLSNLRVLDLSHNRLTSL----------------------  285 (727)
T ss_dssp             S--CCBCTTSCCSC--------------------CCGGGGGGTTCCEEECTTSCCSSC----------------------
T ss_pred             C--EEEeeCCcCcc--------------------cChhhhCCCCCCEEeCcCCcCCcc----------------------
Confidence            8  88888777652                    344456667788888888877754                      


Q ss_pred             CcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccc-cceEEeecccccCCCCc
Q psy11648        177 EDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFE-KLQLLEISFSLFNSNEF  255 (584)
Q Consensus       177 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~l  255 (584)
                         |..+. .+++|+.|++++|.+..++. .|..+++|++|+|++|.+.+.  .+..+.... .+..+++++|.+. +.+
T Consensus       286 ---p~~~~-~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~~~~~~~l~l~~N~l~-~~~  357 (727)
T 4b8c_D          286 ---PAELG-SCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQ--FLKILTEKSVTGLIFYLRDNRPE-IPL  357 (727)
T ss_dssp             ---CSSGG-GGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSH--HHHHHHHHHHHHHHHHHHHCCCC-CCC
T ss_pred             ---Chhhc-CCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCC--ChHHHhhcchhhhHHhhccCccc-CcC
Confidence               22333 67778888888887765533 477778888888888777654  444444331 1223556666654 333


Q ss_pred             hhhHhhhcCCCCCEEEccCc
Q psy11648        256 PYYILNKNLNTLEWLAMDNN  275 (584)
Q Consensus       256 ~~~~~~~~~~~L~~L~l~~~  275 (584)
                      |        ..|+.|+++.|
T Consensus       358 p--------~~l~~l~l~~n  369 (727)
T 4b8c_D          358 P--------HERRFIEINTD  369 (727)
T ss_dssp             C--------CC---------
T ss_pred             c--------cccceeEeecc
Confidence            3        23455555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.50  E-value=1.4e-12  Score=130.30  Aligned_cols=310  Identities=17%  Similarity=0.235  Sum_probs=180.2

Q ss_pred             CCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCc---cceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648        189 NLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK---LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN  265 (584)
Q Consensus       189 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~  265 (584)
                      .|+.+.+... ++.+...+|.+|.+|+.+.+..+.   +..+  ...+|..+.+|+.+.+..+.   ..++...| ..+.
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~I--g~~aF~~c~~L~~i~~~~~~---~~I~~~aF-~~c~  137 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKI--GRQAFMFCSELTDIPILDSV---TEIDSEAF-HHCE  137 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEE--CTTTTTTCTTCCBCGGGTTC---SEECTTTT-TTCT
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEe--chhhchhcccceeeccCCcc---ceehhhhh-hhhc
Confidence            4677776543 555666667777777777775542   4444  45667777777766665442   24555555 6777


Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648        266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT  345 (584)
Q Consensus       266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  345 (584)
                      +|+.+.+.. .+..+...++..+..|+.+.+.++ +..+....|.   ...|+.+.+... ........+..|..+....
T Consensus       138 ~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~---~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~  211 (394)
T 4gt6_A          138 ELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT---GTALTQIHIPAK-VTRIGTNAFSECFALSTIT  211 (394)
T ss_dssp             TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT---TCCCSEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccccccc-eeeeecccceecccccccccccce-eeEecccccc---ccceeEEEECCc-ccccccchhhhccccceec
Confidence            777777754 344455556777777777777543 5666666665   456777777654 2333345566777777666


Q ss_pred             ccCCcCCCcChhhh-------------ccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhccccc
Q psy11648        346 LSYNLLKSIKTTSF-------------KNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITS  412 (584)
Q Consensus       346 l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  412 (584)
                      .............+             .....+..+.+. +.+..+...+|..|..|+.+.+.++. ..+...       
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~-------  282 (394)
T 4gt6_A          212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV-VSIGTG-------  282 (394)
T ss_dssp             ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC-CEECTT-------
T ss_pred             ccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccccc-ceecCc-------
Confidence            55443222111111             111222333332 12333334556666666666654332 122222       


Q ss_pred             CCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCe
Q psy11648        413 KQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLEL  492 (584)
Q Consensus       413 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  492 (584)
                                           .+..++.|+.+.+. +.++.++...|.++ .+|+++.+..+ ++.+...+|.+|.+|+.
T Consensus       283 ---------------------aF~~c~~L~~i~l~-~~i~~I~~~aF~~c-~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          283 ---------------------AFMNCPALQDIEFS-SRITELPESVFAGC-ISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             ---------------------TTTTCTTCCEEECC-TTCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             ---------------------ccccccccccccCC-CcccccCceeecCC-CCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence                                 23346777777775 34667777778877 88888888753 66677778888888888


Q ss_pred             eeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcC
Q psy11648        493 LSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL  548 (584)
Q Consensus       493 L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l  548 (584)
                      +.+..+ ++.+...+|.+|.+|+.+++.++....   ..+..+..|+.+.+..+.+
T Consensus       339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            888654 555556778888888888888765332   3466778888887776643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=6.8e-14  Score=122.67  Aligned_cols=110  Identities=19%  Similarity=0.121  Sum_probs=98.1

Q ss_pred             CCCcEEEccCCcccccCccccCCC-cccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEE
Q psy11648        464 DSLRKLYLDFNEIKHLDATAFGNL-DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN  542 (584)
Q Consensus       464 ~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~  542 (584)
                      .+|++|++++|++..++ . +..+ ++|++|++++|.+++.  ..+..+++|++|++++|+++++++..|..+++|++|+
T Consensus        19 ~~L~~L~l~~n~l~~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCCSCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCchhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            88999999999998763 3 4444 4999999999999986  6789999999999999999999877778999999999


Q ss_pred             cCCCcCCccCc--cccCCCCcceEECCCCCCCCCCCC
Q psy11648        543 ISHNRLRSLPR--DVFSNTIIEKLDISYNQDKIRPGR  577 (584)
Q Consensus       543 L~~n~l~~lp~--~l~~~~~L~~l~l~~n~l~~~p~~  577 (584)
                      +++|+++.+|.  .+..+++|+.|++++|+++.+|..
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~  131 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY  131 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhH
Confidence            99999999987  788889999999999999988764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=5.4e-13  Score=116.31  Aligned_cols=109  Identities=21%  Similarity=0.303  Sum_probs=88.1

Q ss_pred             ccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECC
Q psy11648        441 IKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLS  520 (584)
Q Consensus       441 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls  520 (584)
                      -+.++++++.++.+|...    +++|++|++++|++.++++..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus        14 ~~~l~~~~n~l~~iP~~~----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI----PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCCccCCCc----CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            367888888888888533    2778888888888888877788888888888888888887766667888888888888


Q ss_pred             CCCCCCcCcccccCCCCccEEEcCCCcCCccCc
Q psy11648        521 FNEISMLTGEQFYFSFKLRILNISHNRLRSLPR  553 (584)
Q Consensus       521 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~  553 (584)
                      +|+++++++..|..+++|++|++++|.+...+.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            888888887778888888888888888876554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=5.9e-13  Score=115.67  Aligned_cols=109  Identities=22%  Similarity=0.286  Sum_probs=88.5

Q ss_pred             cccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEEC
Q psy11648        440 YIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL  519 (584)
Q Consensus       440 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  519 (584)
                      +.+.++++++.++.+|...    ++++++|++++|++.++++..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            4578888888888888533    277888888888888887778888888888888888888777777788888888888


Q ss_pred             CCCCCCCcCcccccCCCCccEEEcCCCcCCccC
Q psy11648        520 SFNEISMLTGEQFYFSFKLRILNISHNRLRSLP  552 (584)
Q Consensus       520 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp  552 (584)
                      ++|+++++++..|..+++|++|++++|.++..+
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            888888888877888888888888888777443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.40  E-value=1.5e-13  Score=147.57  Aligned_cols=176  Identities=23%  Similarity=0.254  Sum_probs=86.3

Q ss_pred             CCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcccccc--------ccccccccCcccEEEccCCCCCCCChhh
Q psy11648        387 PNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY--------ENDKKQAPIYIKSLDLSNNRIQEVPVNF  458 (584)
Q Consensus       387 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--------~~~~~~~~~~L~~L~l~~~~l~~~~~~~  458 (584)
                      +.++.+++.++.+.......         ++.++++.+.+....        ....+..++.|+.|++++|.+..++...
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~---------l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  243 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQAL---------LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI  243 (727)
T ss_dssp             ----------------------------------------------------------CCCCCCEEECTTSCCSCCCGGG
T ss_pred             CccceEEeeCCCCCcchhhH---------hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh
Confidence            56778888887776643322         233333333332211        1112334566777777777777776555


Q ss_pred             HHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCc
Q psy11648        459 LQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKL  538 (584)
Q Consensus       459 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L  538 (584)
                      + .+ ++|++|+|++|.+..+ +..|..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++.++. .|..+++|
T Consensus       244 ~-~l-~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L  318 (727)
T 4b8c_D          244 F-KY-DFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNL  318 (727)
T ss_dssp             G-GC-CSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCS-STTSCTTC
T ss_pred             c-CC-CCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccCh-hhhcCCCc
Confidence            4 44 7777777777777644 345667777777777777776 446667777777777777777765543 36677777


Q ss_pred             cEEEcCCCcCCc-cCccccCC-CCcceEECCCCCCC-CCCC
Q psy11648        539 RILNISHNRLRS-LPRDVFSN-TIIEKLDISYNQDK-IRPG  576 (584)
Q Consensus       539 ~~L~L~~n~l~~-lp~~l~~~-~~L~~l~l~~n~l~-~~p~  576 (584)
                      ++|+|++|.|++ +|..+... ..+..+++++|.++ .+|.
T Consensus       319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            777777777774 33333332 22234567777776 4443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=1.3e-12  Score=113.59  Aligned_cols=106  Identities=24%  Similarity=0.295  Sum_probs=70.0

Q ss_pred             ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeecc
Q psy11648        417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE  496 (584)
Q Consensus       417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  496 (584)
                      +.++++++.++.++...    .++++.|++++|.++.+++..|..+ ++|++|++++|++.++++..|..+++|++|+++
T Consensus        12 ~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCc-ccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            56666666666655433    2566777777777766665666666 667777777777766666666667777777777


Q ss_pred             CcccccccccccCCCCCccEEECCCCCCCCc
Q psy11648        497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISML  527 (584)
Q Consensus       497 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  527 (584)
                      +|.+....+..|..+++|++|++++|.+...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            7777666555666677777777777766543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=2e-12  Score=112.73  Aligned_cols=106  Identities=22%  Similarity=0.291  Sum_probs=69.4

Q ss_pred             ceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeecc
Q psy11648        417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLE  496 (584)
Q Consensus       417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  496 (584)
                      +.++++++.++.++...    .+++++|++++|.++.+++..+..+ ++|++|++++|++.++++..|..+++|++|+++
T Consensus        15 ~~l~~~~n~l~~iP~~~----~~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI----PTDKQRLWLNNNQITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCCccCCCc----CCCCcEEEeCCCCccccCHHHhcCC-cCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            45666666666655433    2566777777777666665666666 667777777777766666666666777777777


Q ss_pred             CcccccccccccCCCCCccEEECCCCCCCCc
Q psy11648        497 HNNIAVVVKRTFIGMPNLQIIDLSFNEISML  527 (584)
Q Consensus       497 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  527 (584)
                      +|.+....+..|..+++|+.|++++|++...
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            7776665555566677777777777766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.35  E-value=1.7e-10  Score=114.65  Aligned_cols=138  Identities=12%  Similarity=0.143  Sum_probs=66.4

Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII  517 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  517 (584)
                      +..++.+.+..+ +..+....+..+ ..|+.+.+..+ +..+...+|.++.+|+.+.+..+ +......+|.+|++|+.+
T Consensus       216 ~~~l~~i~~~~~-~~~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          216 GKNLKKITITSG-VTTLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             ccccceeeeccc-eeEEccccccCC-ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            344555544332 333333444444 55555555433 34444445555555555555432 333333445555555555


Q ss_pred             ECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccc-cCCCCcceEECCCCCCCCCCCCCCCC
Q psy11648        518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDV-FSNTIIEKLDISYNQDKIRPGRESNP  581 (584)
Q Consensus       518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l-~~~~~L~~l~l~~n~l~~~p~~~~~~  581 (584)
                      .+.++.++.+...+|.+|.+|+.+.|.++ ++.|+... ..|++|+.+.+..+ ++.|....|.-
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~  354 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG  354 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence            55555555555555555555555555432 44444332 23355555555433 44555554443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.34  E-value=1.5e-10  Score=114.94  Aligned_cols=310  Identities=15%  Similarity=0.228  Sum_probs=151.7

Q ss_pred             hccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648        186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN  265 (584)
Q Consensus       186 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~  265 (584)
                      ...+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++.+  ...+|..+ +|+.+.+..+ +  ..+....| ..+ 
T Consensus        44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~I--g~~aF~~c-~l~~i~~~~~-l--~~I~~~aF-~~~-  113 (379)
T 4h09_A           44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSI--GDGAFADT-KLQSYTGMER-V--KKFGDYVF-QGT-  113 (379)
T ss_dssp             GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEE--CTTTTTTC-CCCEEEECTT-C--CEECTTTT-TTC-
T ss_pred             cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEe--chhhhcCC-CCceEECCce-e--eEecccee-ccC-
Confidence            567788888864 466677777888888888888654 5555  56677766 5666666543 1  24455554 333 


Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648        266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT  345 (584)
Q Consensus       266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  345 (584)
                      +|+.+.+..+ ++.+...++..+ +++.+.+.. .++.+....+..  +..++.+.+...............        
T Consensus       114 ~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~--~~~l~~~~~~~~~~~~~~~~~~~~--------  180 (379)
T 4h09_A          114 DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYK--AENLEKIEVSSNNKNYVAENYVLY--------  180 (379)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTT--CTTCCEEEECTTCSSEEEETTEEE--------
T ss_pred             CcccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcc--cccccccccccccceeecccceec--------
Confidence            6777776553 333333344443 354444432 233444444433  455554444432211110000000        


Q ss_pred             ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648        346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY  425 (584)
Q Consensus       346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~  425 (584)
                       ..   .......+..+..+..+.+... ........+..+..++.+.+..+ +..+....|                  
T Consensus       181 -~~---~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f------------------  236 (379)
T 4h09_A          181 -NK---NKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAF------------------  236 (379)
T ss_dssp             -ET---TSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTT------------------
T ss_pred             -cc---ccceeccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccc------------------
Confidence             00   0000011222233333333221 11222233444455555554332 222222222                  


Q ss_pred             cccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc
Q psy11648        426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK  505 (584)
Q Consensus       426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  505 (584)
                                ..+..|+.+.+..+ ++.+....|..+ .+|+.+.+.. .+..+...+|.+|.+|+.+.+.++.++.+..
T Consensus       237 ----------~~~~~L~~i~lp~~-v~~I~~~aF~~~-~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~  303 (379)
T 4h09_A          237 ----------YGMKALDEIAIPKN-VTSIGSFLLQNC-TALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEP  303 (379)
T ss_dssp             ----------TTCSSCCEEEECTT-CCEECTTTTTTC-TTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred             ----------cCCccceEEEcCCC-ccEeCcccccee-ehhccccccc-cceeccccccccccccccccccccccceehh
Confidence                      22445555555443 444444455554 5566666543 3444455556666666666666655555555


Q ss_pred             cccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccC
Q psy11648        506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFS  557 (584)
Q Consensus       506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~  557 (584)
                      .+|.+|.+|+.+.+.. .++.+...+|.+|.+|+++.+..+ ++.|....+.
T Consensus       304 ~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~  353 (379)
T 4h09_A          304 RVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE  353 (379)
T ss_dssp             TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             hhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence            5666666666666653 355555666666666666666543 5555444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=1.9e-13  Score=134.49  Aligned_cols=186  Identities=18%  Similarity=0.127  Sum_probs=125.5

Q ss_pred             hhhccccccccccccccccc-----------ccceeeeecCCceeecCCccccccccceeeEEEecCccccccc-----c
Q psy11648         24 KLQHLGTTILKGDQLQGIFN-----------SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELP-----S   87 (584)
Q Consensus        24 ~l~~Lr~L~l~~~~l~~l~~-----------~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~-----~   87 (584)
                      ..++|++|++++|.++....           ++|++|++++|.+.+.....+.....+|+ +|+|++|.++..+     .
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~-~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR-KLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEE-EEECCSSCCCHHHHHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhcc-HhhcCCCCCCHHHHHHHHH
Confidence            45678888999999886332           58999999999987755444443336899 9999999987432     2


Q ss_pred             cccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHH
Q psy11648         88 GLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIV  167 (584)
Q Consensus        88 ~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~  167 (584)
                      .+......|+  +|+|++|.++......++               ..+..+++|++|++++|.+++.+...++.      
T Consensus       149 ~L~~~~~~L~--~L~Ls~n~l~~~~~~~l~---------------~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~------  205 (372)
T 3un9_A          149 LLLHDQCQIT--TLRLSNNPLTAAGVAVLM---------------EGLAGNTSVTHLSLLHTGLGDEGLELLAA------  205 (372)
T ss_dssp             HHHSTTCCCC--EEECCSSCCHHHHHHHHH---------------HHHHTCSSCCEEECTTSSCHHHHHHHHHH------
T ss_pred             HHHhcCCccc--eeeCCCCCCChHHHHHHH---------------HHHhcCCCcCEEeCCCCCCCcHHHHHHHH------
Confidence            2223344599  999999998765554333               34567789999999999888764433221      


Q ss_pred             HhhcCCCCCCcccchhHhhccCCcEEEcCCCccccc----chhhhcCCCCCCEEEcCCCccceeecCCcccccc---c--
Q psy11648        168 KAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDL----NGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVF---E--  238 (584)
Q Consensus       168 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l---~--  238 (584)
                                    .+. ..++|+.|++++|.+++.    ....+..+++|++|++++|.+.+.  ....+..+   .  
T Consensus       206 --------------~L~-~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~--g~~~L~~~~~~~~~  268 (372)
T 3un9_A          206 --------------QLD-RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE--GRQVLRDLGGAAEG  268 (372)
T ss_dssp             --------------HGG-GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH--HHHHHHHCC-----
T ss_pred             --------------HHh-cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH--HHHHHHHHhcCCCc
Confidence                          222 567899999999998863    334556778999999999988654  23333333   1  


Q ss_pred             cceEEe--eccccc
Q psy11648        239 KLQLLE--ISFSLF  250 (584)
Q Consensus       239 ~L~~L~--l~~~~~  250 (584)
                      .|+.+.  +..+.+
T Consensus       269 ~L~~l~~ll~~~~~  282 (372)
T 3un9_A          269 GARVVVSLTEGTAV  282 (372)
T ss_dssp             -CEEECCCC----C
T ss_pred             cchhhHhhhcCCcc
Confidence            166666  555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=6.4e-13  Score=130.72  Aligned_cols=164  Identities=15%  Similarity=0.150  Sum_probs=109.6

Q ss_pred             CCCCcEEecCCCCCCCCChhhhcccc--cCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHh-
Q psy11648        386 LPNLVKLDLQDNKLKDFNLNVFSNIT--SKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF-  462 (584)
Q Consensus       386 ~~~L~~L~l~~~~l~~~~~~~~~~~~--~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-  462 (584)
                      .+.|+.|++++|.++......+....  ....++.|++++|.+++.........+++|+.|++++|.+++.....+... 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            35677777777776655444433321  124677777777776654433333345678899999998875444444321 


Q ss_pred             ---hCCCcEEEccCCcccccC----ccccCCCcccCeeeccCccccccc----ccccCCCCCccEEECCCCCCCCcCc--
Q psy11648        463 ---ADSLRKLYLDFNEIKHLD----ATAFGNLDVLELLSLEHNNIAVVV----KRTFIGMPNLQIIDLSFNEISMLTG--  529 (584)
Q Consensus       463 ---~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~ls~n~i~~~~~--  529 (584)
                         .++|++|++++|.++...    ...+..+++|++|++++|.+.+..    ...+..+++|++|++++|.+++...  
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence               267899999999886532    233466788999999998887632    4556777889999999998875433  


Q ss_pred             --ccccCCCCccEEEcCCCcCC
Q psy11648        530 --EQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       530 --~~~~~~~~L~~L~L~~n~l~  549 (584)
                        ..+..++.|++|+|++|.|+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence              33445688999999999887

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=4.8e-14  Score=126.32  Aligned_cols=84  Identities=23%  Similarity=0.330  Sum_probs=38.5

Q ss_pred             CcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc-cccCCCCCccEE
Q psy11648        439 IYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK-RTFIGMPNLQII  517 (584)
Q Consensus       439 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L  517 (584)
                      ++|++|++++|.++.+| ..+..+ ++|++|++++|++.+++  .+..+++|++|++++|.+....+ ..+..+++|++|
T Consensus        70 ~~L~~L~l~~n~l~~l~-~~~~~~-~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A           70 ENLRILSLGRNLIKKIE-NLDAVA-DTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             TTCCEEEEEEEEECSCS-SHHHHH-HHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             CCCCEEECCCCCccccc-chhhcC-CcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence            44555555555444444 233333 44555555555544432  24444455555555555443221 234445555555


Q ss_pred             ECCCCCCCC
Q psy11648        518 DLSFNEISM  526 (584)
Q Consensus       518 ~ls~n~i~~  526 (584)
                      ++++|++.+
T Consensus       146 ~l~~N~l~~  154 (198)
T 1ds9_A          146 LLAGNPLYN  154 (198)
T ss_dssp             EECSCHHHH
T ss_pred             EecCCcccc
Confidence            555554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.21  E-value=4e-13  Score=120.28  Aligned_cols=133  Identities=20%  Similarity=0.210  Sum_probs=85.5

Q ss_pred             hccCCcEEEcCCCcccccchh------hhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhH
Q psy11648        186 LLSNLETLLLRCNKITDLNGN------LFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI  259 (584)
Q Consensus       186 ~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~  259 (584)
                      ....++.++++.+.+.+..+.      .+..+++|++|++++|.+.++   + .+..+++|+.|++++|.+.  .+|..+
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l---~-~~~~l~~L~~L~l~~n~l~--~l~~~~   89 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI---S-SLSGMENLRILSLGRNLIK--KIENLD   89 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC---C-CHHHHTTCCEEEEEEEEEC--SCSSHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc---c-ccccCCCCCEEECCCCCcc--cccchh
Confidence            345555555555555544333      677788888888888777654   4 6777777888888877774  566544


Q ss_pred             hhhcCCCCCEEEccCccccccccccccCCCCCcEEEcccCCCccccc-ccccccccCCccEEEcCCCccccc
Q psy11648        260 LNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHN-NLFHFNIHKRLKEIRLSNNYLELI  330 (584)
Q Consensus       260 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~-~~~~~~~~~~L~~L~l~~~~~~~~  330 (584)
                        ..+++|++|++++|.+++++  .+..+++|++|++++|.++.++. ..+..  +++|++|++++|.+...
T Consensus        90 --~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~--l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           90 --AVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAA--LDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             --HHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTT--TTTCSEEEECSCHHHHH
T ss_pred             --hcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhc--CCCCCEEEecCCccccc
Confidence              45677777777777777654  46666777777777777665443 12222  56666666666666544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=4.8e-11  Score=117.10  Aligned_cols=105  Identities=23%  Similarity=0.338  Sum_probs=85.7

Q ss_pred             cEEEccCC-CCCCCChhhHHHhhCCCcEEEccC-CcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEEC
Q psy11648        442 KSLDLSNN-RIQEVPVNFLQTFADSLRKLYLDF-NEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDL  519 (584)
Q Consensus       442 ~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  519 (584)
                      ..++.+++ .++.+|.  +..+ ++|++|+|++ |.+.++++..|.++++|++|+|++|.+.+..+..|..+++|++|+|
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~-~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC--CCCC-CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            34677777 7888885  6666 7888888886 8888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCCcCcccccCCCCccEEEcCCCcCCc
Q psy11648        520 SFNEISMLTGEQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       520 s~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      ++|+++++++..|..++ |+.|+|.+|.+..
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            88888888877776665 8888888888774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=1.6e-10  Score=113.34  Aligned_cols=103  Identities=21%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             eEECCCC-ccccccccccccccCcccEEEccC-CCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648        418 NLNLSNN-YITNLYENDKKQAPIYIKSLDLSN-NRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL  495 (584)
Q Consensus       418 ~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  495 (584)
                      .++.+++ .++.++.   ....++|+.|++++ |.++.++...|..+ ++|+.|+|++|++.++++..|.++++|++|+|
T Consensus        12 ~v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             CEECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             EEEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            3455555 5666554   23355677777764 66666666666666 67777777777776666666666777777777


Q ss_pred             cCcccccccccccCCCCCccEEECCCCCCC
Q psy11648        496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEIS  525 (584)
Q Consensus       496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~  525 (584)
                      ++|.+....+..|..++ |+.|++.+|.+.
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            77776665555555554 777777776665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.60  E-value=2.1e-08  Score=87.96  Aligned_cols=18  Identities=22%  Similarity=0.265  Sum_probs=8.6

Q ss_pred             cCCccceeeccccccccc
Q psy11648        137 LLSNLETLLLRCNKITDL  154 (584)
Q Consensus       137 ~~~~L~~L~l~~n~i~~~  154 (584)
                      ..++|++|++++|.|.+.
T Consensus        91 ~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           91 VNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HCSSCCEEECCSSCCCHH
T ss_pred             hCCCcCEEECcCCcCCHH
Confidence            334455555555544443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.57  E-value=7e-09  Score=91.03  Aligned_cols=119  Identities=12%  Similarity=0.047  Sum_probs=89.3

Q ss_pred             cccccchhhhcccccccccc-cccccc-----c-----ccceeeeecCCceeecCCcccccc---ccceeeEEEecCccc
Q psy11648         17 TLYSNVTKLQHLGTTILKGD-QLQGIF-----N-----SKLRELEITGKDLKFIDPSAFDNI---DACYDLTLKITNTQI   82 (584)
Q Consensus        17 ~~~~~l~~l~~Lr~L~l~~~-~l~~l~-----~-----~~L~~L~ls~n~~~~~~~~~~~~~---~~~L~~~L~ls~n~i   82 (584)
                      ++...+...+.|++|++++| .+.+-.     .     ++|++|++++|.+.+.....+...   .++|+ +|+|++|.|
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~-~L~L~~N~i  105 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK-SLNVESNFI  105 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC-EEECCSSCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC-EEECcCCcC
Confidence            34445677889999999999 887521     1     889999999999987544333322   36799 999999998


Q ss_pred             cc-----ccccccccccccceeeeec--CCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccc
Q psy11648         83 EE-----LPSGLFDKIENIEQMTLDL--SHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDL  154 (584)
Q Consensus        83 ~~-----l~~~~~~~~~~L~~~~L~l--s~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~  154 (584)
                      +.     +...+..+.. |+  +|+|  ++|.++......++.               .+...++|++|++++|.+...
T Consensus       106 ~~~g~~~l~~~L~~n~~-L~--~L~L~~~~N~i~~~g~~~l~~---------------~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          106 SGSGILALVEALQSNTS-LI--ELRIDNQSQPLGNNVEMEIAN---------------MLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             CHHHHHHHHHGGGGCSS-CC--EEECCCCSSCCCHHHHHHHHH---------------HHHHCSSCCEEECCCSSHHHH
T ss_pred             CHHHHHHHHHHHHhCCC-ce--EEEecCCCCCCCHHHHHHHHH---------------HHHhCCCcCEEeccCCCCChH
Confidence            83     4555555555 99  9999  889998766655543               366778999999999987654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.54  E-value=1.3e-07  Score=92.00  Aligned_cols=60  Identities=13%  Similarity=0.135  Sum_probs=29.6

Q ss_pred             CCcccCeeeccCccccccc----ccccCCCCCccEEECCCCCCCCcCcccccC-CCCccEEEcCCCc
Q psy11648        486 NLDVLELLSLEHNNIAVVV----KRTFIGMPNLQIIDLSFNEISMLTGEQFYF-SFKLRILNISHNR  547 (584)
Q Consensus       486 ~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~-~~~L~~L~L~~n~  547 (584)
                      .+++|++|+++.|.+.+..    +..+..+++|+.|++++|.+++.....+.. +  ..++++++++
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            3556666666666555431    222234566666666666655332222221 1  2445665554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.51  E-value=2.7e-07  Score=89.71  Aligned_cols=82  Identities=17%  Similarity=0.056  Sum_probs=47.6

Q ss_pred             hccCCcEEEcCCCccc---------ccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCch
Q psy11648        186 LLSNLETLLLRCNKIT---------DLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP  256 (584)
Q Consensus       186 ~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~  256 (584)
                      .+++|+.|.+.+....         ..+...+..+++|++|+++++.-..   .+. + .+++|++|++..|.+. ....
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l~-~~~l  210 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGLP-DSVV  210 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBCC-HHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCCC-hHHH
Confidence            5788888888654321         1233456677888888887762111   122 2 2677888888777654 2211


Q ss_pred             hhHhhhcCCCCCEEEcc
Q psy11648        257 YYILNKNLNTLEWLAMD  273 (584)
Q Consensus       257 ~~~~~~~~~~L~~L~l~  273 (584)
                      ..+....+|+|++|+|+
T Consensus       211 ~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHHSBCTTCCEEEEE
T ss_pred             HHHHHccCCCCcEEEEe
Confidence            22211357778887774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.27  E-value=1.5e-07  Score=80.17  Aligned_cols=85  Identities=9%  Similarity=0.011  Sum_probs=40.0

Q ss_pred             CCcEEEccCCcccccCccccCCCcccCeeeccCcc-cccccccccCC----CCCccEEECCCCC-CCCcCcccccCCCCc
Q psy11648        465 SLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNN-IAVVVKRTFIG----MPNLQIIDLSFNE-ISMLTGEQFYFSFKL  538 (584)
Q Consensus       465 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~----~~~L~~L~ls~n~-i~~~~~~~~~~~~~L  538 (584)
                      .|++|++++|.++......+.+|++|++|++++|. +++..-..+..    +++|++|++++|. |++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34444444444443333334455555555555553 44332222332    2345555555553 553333344455666


Q ss_pred             cEEEcCCC-cCC
Q psy11648        539 RILNISHN-RLR  549 (584)
Q Consensus       539 ~~L~L~~n-~l~  549 (584)
                      ++|++++| +++
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            66666665 344

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=5.1e-07  Score=76.81  Aligned_cols=82  Identities=11%  Similarity=-0.003  Sum_probs=67.6

Q ss_pred             cccCeeeccCcccccccccccCCCCCccEEECCCCC-CCCcCcccccCC----CCccEEEcCCC-cCC--ccCccccCCC
Q psy11648        488 DVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNE-ISMLTGEQFYFS----FKLRILNISHN-RLR--SLPRDVFSNT  559 (584)
Q Consensus       488 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~~----~~L~~L~L~~n-~l~--~lp~~l~~~~  559 (584)
                      ..|++||+++|.+++..-..+.+|++|++|+|++|. +++..-..+..+    ++|++|+|++| +|+  ++. .+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence            579999999999988766778999999999999995 775544555553    57999999999 688  353 456789


Q ss_pred             CcceEECCCCC
Q psy11648        560 IIEKLDISYNQ  570 (584)
Q Consensus       560 ~L~~l~l~~n~  570 (584)
                      +|+.|++++|+
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            99999999996

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.05  E-value=1e-06  Score=81.10  Aligned_cols=80  Identities=25%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             CCCcccCeeeccCcccccc--cccccCCCCCccEEECCCCCCCCcC-cccccCCCCccEEEcCCCcCCc-cCc-------
Q psy11648        485 GNLDVLELLSLEHNNIAVV--VKRTFIGMPNLQIIDLSFNEISMLT-GEQFYFSFKLRILNISHNRLRS-LPR-------  553 (584)
Q Consensus       485 ~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~ls~n~i~~~~-~~~~~~~~~L~~L~L~~n~l~~-lp~-------  553 (584)
                      .++++|++|+|++|.+.+.  ++..+..+++|+.|+|++|++.++. ...+..+ +|++|+|++|.+.. +|.       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            3466777777777777663  3344556777777777777776551 1222223 67777777777663 331       


Q ss_pred             cccCCCCcceEE
Q psy11648        554 DVFSNTIIEKLD  565 (584)
Q Consensus       554 ~l~~~~~L~~l~  565 (584)
                      .+..+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            244456776665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.93  E-value=8e-07  Score=77.15  Aligned_cols=105  Identities=10%  Similarity=0.115  Sum_probs=74.1

Q ss_pred             CccccCCC-ccceeccccccccchhhhccccccccccccccccc----------ccceeeeecCCceeecCCcccccc--
Q psy11648          1 MTLDLSHN-KLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIFN----------SKLRELEITGKDLKFIDPSAFDNI--   67 (584)
Q Consensus         1 ~~l~ls~~-~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~~----------~~L~~L~ls~n~~~~~~~~~~~~~--   67 (584)
                      ++|+|++| +|.+..+.++..++..-+.|+.|+|++|+|.+..+          ..|++|+|++|.|.+....++...  
T Consensus        44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~  123 (197)
T 1pgv_A           44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL  123 (197)
T ss_dssp             CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred             cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence            35788885 88888888888888888888888888888886332          788888888888877655443321  


Q ss_pred             -ccceeeEEEecCc---ccc-----cccccccccccccceeeeecCCCcee
Q psy11648         68 -DACYDLTLKITNT---QIE-----ELPSGLFDKIENIEQMTLDLSHNKLS  109 (584)
Q Consensus        68 -~~~L~~~L~ls~n---~i~-----~l~~~~~~~~~~L~~~~L~ls~~~l~  109 (584)
                       ...|+ +|+|+++   .++     .+.+.+..+.. |+  .|+++.+.+.
T Consensus       124 ~N~tL~-~L~L~n~~~~~ig~~g~~~ia~aL~~N~t-L~--~L~l~~~~~g  170 (197)
T 1pgv_A          124 VTQSIV-EFKADNQRQSVLGNQVEMDMMMAIEENES-LL--RVGISFASME  170 (197)
T ss_dssp             TTCCCS-EEECCCCSSCCCCHHHHHHHHHHHHHCSS-CC--EEECCCCCHH
T ss_pred             hCCcee-EEECCCCcCcCcCHHHHHHHHHHHHhCCC-cC--eEeccCCCcc
Confidence             35688 8888765   334     24444555555 88  8888877554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.92  E-value=5.3e-06  Score=71.98  Aligned_cols=21  Identities=19%  Similarity=0.056  Sum_probs=10.7

Q ss_pred             hhcCCccceeecccccccccc
Q psy11648        135 EKLLSNLETLLLRCNKITDLN  155 (584)
Q Consensus       135 l~~~~~L~~L~l~~n~i~~~~  155 (584)
                      +...+.|++|+|++|.|.+.+
T Consensus        94 L~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           94 IETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHCSSCCEEECCSSBCCHHH
T ss_pred             HhcCCccCeEecCCCcCCHHH
Confidence            334455555555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.88  E-value=8e-06  Score=75.12  Aligned_cols=78  Identities=22%  Similarity=0.141  Sum_probs=45.8

Q ss_pred             CCCcEEEccCCcccccC--ccccCCCcccCeeeccCcccccc-cccccCCCCCccEEECCCCCCCCcCc-------cccc
Q psy11648        464 DSLRKLYLDFNEIKHLD--ATAFGNLDVLELLSLEHNNIAVV-VKRTFIGMPNLQIIDLSFNEISMLTG-------EQFY  533 (584)
Q Consensus       464 ~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ls~n~i~~~~~-------~~~~  533 (584)
                      ++|++|+|++|++.++.  +..+..+++|+.|+|++|.+.+. ....+..+ +|++|++++|.+.+..+       ..+.
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence            67777777777776543  23445667777777777776654 11223333 67777777777664222       2344


Q ss_pred             CCCCccEEE
Q psy11648        534 FSFKLRILN  542 (584)
Q Consensus       534 ~~~~L~~L~  542 (584)
                      .+|+|+.|+
T Consensus       249 ~~P~L~~LD  257 (267)
T 3rw6_A          249 RFPKLLRLD  257 (267)
T ss_dssp             HCTTCCEES
T ss_pred             HCcccCeEC
Confidence            566776664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.87  E-value=0.00069  Score=54.81  Aligned_cols=55  Identities=22%  Similarity=0.369  Sum_probs=34.3

Q ss_pred             eeeecCCcee--ecCCccccccccceeeEEEecCcccccccccccccccccceeeeecCCCcee
Q psy11648         48 ELEITGKDLK--FIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLS  109 (584)
Q Consensus        48 ~L~ls~n~~~--~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls~~~l~  109 (584)
                      .++.++++++  .++.. +   ..+++ +|+|++|+|+.++.++|....+|+  +|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~-l---p~~l~-~L~Ls~N~l~~l~~~~f~~l~~L~--~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-F---PVDTT-ELVLTGNNLTALPPGLLDALPALR--TAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-C---CTTCS-EEECTTSCCSSCCTTTGGGCTTCC--EEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC-C---CcCCC-EEECCCCcCCccChhhhhhccccC--EEEecCCCee
Confidence            3455555555  33322 2   23566 777777777777777777766677  7777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.58  E-value=0.002  Score=52.06  Aligned_cols=53  Identities=17%  Similarity=0.216  Sum_probs=48.2

Q ss_pred             ccccccccccc--cccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccc
Q psy11648         29 GTTILKGDQLQ--GIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIE   83 (584)
Q Consensus        29 r~L~l~~~~l~--~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~   83 (584)
                      ++++++++.++  .+|.   +++++|+|++|.|+.+....|..+ ++|+ +|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l-~~L~-~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDAL-PALR-TAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGC-TTCC-EEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhc-cccC-EEEecCCCee
Confidence            36799999999  8887   799999999999999999999998 8999 9999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	584
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (192), Expect = 2e-16
 Identities = 54/266 (20%), Positives = 111/266 (41%), Gaps = 17/266 (6%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS 371
           ++      + L NN +  I+   F NLK L+T+ L  N +  I   +F  L  +  + LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 372 FNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE 431
            NQ+K +       L  L   + +  K++    N  + +   +   N   S+      ++
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 432 NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLE 491
             KK     +  + +++  I  +P         SL +L+LD N+I  +DA +   L+ L 
Sbjct: 148 GMKK-----LSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 492 LLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSL 551
            L L  N+I+ V   +    P+L+ + L+ N++  + G        ++++ + +N + ++
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAI 257

Query: 552 PRDVFS-------NTIIEKLDISYNQ 570
             + F              + +  N 
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 6e-16
 Identities = 72/286 (25%), Positives = 117/286 (40%), Gaps = 15/286 (5%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L  +   L L+ NKIT++    F++L NL  L L  NK+  I      F    KL+ L +
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYL 86

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
           S +          +  K   TL+ L +  N I  +R      L  +  + L  N +    
Sbjct: 87  SKNQLKE------LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
                F   K+L  IR+++  +  I      +L EL+   L  N +  +   S K LNN+
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNL 197

Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY 425
             + LSFN I  +   +  N P+L +L L +NKL      +  +   +     + L NN 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ----VVYLHNNN 253

Query: 426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYL 471
           I+ +  ND        K    S   +   PV + +    + R +Y+
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 7e-13
 Identities = 57/270 (21%), Positives = 100/270 (37%), Gaps = 22/270 (8%)

Query: 266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNN 325
               L + NN I  I++    NL +L+ + L  NKISKI    F      +L+ + LS N
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL--VKLERLYLSKN 89

Query: 326 YLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYI--YPNAF 383
            L+ +       L+EL       N +  ++ + F  LN M+ + L  N +K       AF
Sbjct: 90  QLKELPEKMPKTLQELRV---HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 384 VNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS 443
             +  L  + + D  +      +  ++T       L+L  N IT   +    +    +  
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTE------LHLDGNKITK-VDAASLKGLNNLAK 199

Query: 444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV 503
           L LS N I  V    L            +   +K        +   ++++ L +NNI+ +
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNISAI 257

Query: 504 VKRTFIG------MPNLQIIDLSFNEISML 527
               F          +   + L  N +   
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 54/309 (17%), Positives = 97/309 (31%), Gaps = 44/309 (14%)

Query: 46  LRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLSH 105
              L++    +  I    F N+   + L L      I ++  G F  +  +E   L LS 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLE--RLYLSK 88

Query: 106 NKLSVL--NMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQ 163
           N+L  L   M      +   ++  T + K     L+ +  + L  N +            
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 164 KSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK 223
              +   +  + N   +   + L  +L  L L  NKIT ++    + L NL +L LS   
Sbjct: 149 MKKLSYIRIADTNITTIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS--- 203

Query: 224 LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNY 283
                                       ++       +            NNN       
Sbjct: 204 ---------------------------FNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 284 SLYNLTSLNYINLEYNKISKIHNNLF----HFNIHKRLKEIRLSNNYLEL--IESDTFYN 337
            L +   +  + L  N IS I +N F    +         + L +N ++   I+  TF  
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

Query: 338 LKELNTITL 346
           +     + L
Sbjct: 297 VYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 41/263 (15%), Positives = 92/263 (34%), Gaps = 33/263 (12%)

Query: 2   TLDLSHNKLSVLNMATL-----------------------YSNVTKLQHLGTTILKGDQL 38
            LDL +NK++ +                            ++ + KL+ L  +  +  +L
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 39  QGIFNSKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ 98
                  L+EL +   ++  +  S F+ ++    + L     +   + +G F  ++ +  
Sbjct: 95  PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 154

Query: 99  MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETL-LLRCNKITDLNGN 157
           +   ++   ++ +       ++T+L   G  I K     L  L  L  L  +  +    +
Sbjct: 155 I--RIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211

Query: 158 LFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLF------RHL 211
                    ++    NNN   +V         ++ + L  N I+ +  N F         
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271

Query: 212 YNLQELSLSFNKLQIIELNSNVF 234
            +   +SL  N +Q  E+  + F
Sbjct: 272 ASYSGVSLFSNPVQYWEIQPSTF 294

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 83/403 (20%), Positives = 151/403 (37%), Gaps = 44/403 (10%)

Query: 167 VKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQI 226
           +K      N  D VS  +  L  + TL      I  ++G    +L NL +++ S N+L  
Sbjct: 25  MKTVLGKTNVTDTVSQTD--LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTD 80

Query: 227 IELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
           I    N      KL  + ++ +          + N    TL    + + +          
Sbjct: 81  ITPLKN----LTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN--- 133

Query: 287 NLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITL 346
                       N++    N +   +    L  ++  +   ++ +     NL  L  + +
Sbjct: 134 -----------LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 347 SYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNV 406
           S N  K    +    L N+ +++ + NQI  I P   +   NL +L L  N+LKD     
Sbjct: 183 SSN--KVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDI---- 234

Query: 407 FSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSL 466
              + S     +L+L+NN I+NL           +  L L  N+I  +        A   
Sbjct: 235 -GTLASLTNLTDLDLANNQISNLAPLSGLT---KLTELKLGANQISNIS-----PLAGLT 285

Query: 467 RKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISM 526
               L+ NE +  D +   NL  L  L+L  NNI+ +       +  LQ +  + N++S 
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD 343

Query: 527 LTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYN 569
           +          +  L+  HN++  L   + + T I +L ++  
Sbjct: 344 V--SSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 64/370 (17%), Positives = 129/370 (34%), Gaps = 39/370 (10%)

Query: 227 IELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLY 286
           I  ++ +  +F    L E   ++         +   +L+ +  L  D   IK+I    + 
Sbjct: 6   ITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VE 63

Query: 287 NLTSLNYINLEYNKISKIHN-----NLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKEL 341
            L +L  IN   N+++ I        L    ++            L  +   T +N +  
Sbjct: 64  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123

Query: 342 NTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKD 401
           +   L      +    S   ++++  +    +  +  + N   +L  L  L   +     
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 402 FNLNVFSNITSK-QTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQ 460
            N     ++ +K     +L  +NN I+++           +  L L+ N+++++      
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILT---NLDELSLNGNQLKDIGTLASL 240

Query: 461 TFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVV----------------- 503
           T   +L  L L  N+I +L       L  L  L L  N I+ +                 
Sbjct: 241 T---NLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 295

Query: 504 ---VKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI 560
                     + NL  + L FN IS +         KL+ L  ++N++  +   + + T 
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSDVS-SLANLTN 352

Query: 561 IEKLDISYNQ 570
           I  L   +NQ
Sbjct: 353 INWLSAGHNQ 362

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 61/357 (17%), Positives = 136/357 (38%), Gaps = 55/357 (15%)

Query: 92  KIENIEQMT----LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLR 147
            I+ +E +     ++ S+N+L+ +   T   N+TKL  +     +  +       T L  
Sbjct: 58  SIDGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTG 114

Query: 148 CNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNL 207
                +   ++      + +   + ++N              +  +       +    + 
Sbjct: 115 LTLFNNQITDIDPLKNLTNLNRLELSSNT-------------ISDISALSGLTSLQQLSF 161

Query: 208 FRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL 267
              + +L+ L+      ++   ++ V D+    +L  +   +  +N+         L  L
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221

Query: 268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYL 327
           + L+++ N +K+I   +L +LT+L  ++L  N+IS    NL   +   +L E++L  N +
Sbjct: 222 DELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS----NLAPLSGLTKLTELKLGANQI 275

Query: 328 ELIES--------------------DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLN 367
             I                          NLK L  +TL +N +  I  +   +L  +  
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQR 333

Query: 368 IVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
           +  + N++     ++  NL N+  L    N++ D  L   +N+T       L L++ 
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQ---LGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 47/260 (18%), Positives = 83/260 (31%), Gaps = 30/260 (11%)

Query: 312 NIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT-LSYNLLKSIKTTSFKNLNNMLNIVL 370
            I    + I L  N +  + + +F   + L  +   S  L +                + 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 371 SFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLY 430
              Q++ + P  F  L  L  L L                            +       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHL----------------------------DRCGLQEL 120

Query: 431 ENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVL 490
                +    ++ L L +N +Q +P +  +    +L  L+L  N I  +   AF  L  L
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 491 ELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRS 550
           + L L  N +A V    F  +  L  + L  N +S L  E       L+ L ++ N    
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 551 LPRDVFSNTIIEKLDISYNQ 570
             R       ++K   S ++
Sbjct: 240 DCRARPLWAWLQKFRGSSSE 259

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 46/251 (18%), Positives = 92/251 (36%), Gaps = 29/251 (11%)

Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLF--------------- 309
              + + +  N I ++   S     +L  + L  N +++I    F               
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 310 --------HFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKN 361
                    F+   RL  + L    L+ +    F  L  L  + L  N L+++   +F++
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 362 LNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNL 421
           L N+ ++ L  N+I  +   AF  L +L +L L  N++   + + F ++      M L L
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL---GRLMTLYL 208

Query: 422 SNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDA 481
             N ++ L   +       ++ L L++N          +     L+K     +E+     
Sbjct: 209 FANNLSALP-TEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLP 265

Query: 482 TAFGNLDVLEL 492
                 D+  L
Sbjct: 266 QRLAGRDLKRL 276

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 8/229 (3%)

Query: 343 TITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402
           T +     L+++             I L  N+I ++   +F    NL    +        
Sbjct: 15  TTSCPQQGLQAVPVGIPAASQR---IFLHGNRISHVPAASFRACRNL---TILWLHSNVL 68

Query: 403 NLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTF 462
                +  T       L+LS+N      +         + +L L    +QE+        
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRG 127

Query: 463 ADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFN 522
             +L+ LYL  N ++ L    F +L  L  L L  N I+ V +R F G+ +L  + L  N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 523 EISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTI-IEKLDISYNQ 570
            ++ +    F    +L  L +  N L +LP +  +    ++ L ++ N 
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 13/265 (4%)

Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
           + +  + + L  N+I+ +    FR  +   +    +N       +    L    +  L  
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
             ++  ++   F  L  L  L L    LQ +        +F  L  L+  +   N+ +  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-----PGLFRGLAALQYLYLQDNALQAL 144

Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316
                ++L  L  L +  N I ++   +   L SL+ + L  N+++ +H + F       
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYN-LLKSIKTTSFKNLNNMLNIVLSFNQI 375
              + L  N L  + ++    L+ L  + L+ N  +   +         +     S +++
Sbjct: 205 --TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEV 260

Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLK 400
               P             L  N L+
Sbjct: 261 PCSLPQRLAGRD---LKRLAANDLQ 282

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 8e-08
 Identities = 45/235 (19%), Positives = 79/235 (33%), Gaps = 6/235 (2%)

Query: 318 KEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKY 377
           +      + +  I SD   N  EL         L+ I+  +F    ++  I +       
Sbjct: 11  RVFLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEI-SQNDVL 66

Query: 378 IYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQA 437
               A V        +++  K  +          +      L +SN  I +L +  K  +
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEH 497
              +      N  I  +  N     +     L+L+ N I+ +   AF    + EL   ++
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 498 NNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
           NN+  +    F G     I+D+S   I  L         KLR  +     L+ LP
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 2e-07
 Identities = 33/213 (15%), Positives = 72/213 (33%), Gaps = 3/213 (1%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L  N   L     K+  +    F    +L+++ +S N +                +L EI
Sbjct: 27  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE---VIEADVFSNLPKLHEI 83

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
                N+  +      +NL  L++L + N  IK++ +    +      ++++ N      
Sbjct: 84  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 143

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
                  +      + L+ N ++ I +  F   +         N L+ +    F   +  
Sbjct: 144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 203

Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNK 398
           + + +S  +I  +      NL  L      + K
Sbjct: 204 VILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 34/217 (15%), Positives = 73/217 (33%), Gaps = 4/217 (1%)

Query: 342 NTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKD 401
                  + +  I +   +N      +     +++ I   AF    +L K+++  N + +
Sbjct: 11  RVFLCQESKVTEIPSDLPRNAIE---LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 402 FNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQT 461
                  +   K   + +  +NN +    E  +    +    +  +        V+ + +
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS-NTGIKHLPDVHKIHS 126

Query: 462 FADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF 521
               L  +  + N       +  G      +L L  N I  +    F G    ++     
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 522 NEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSN 558
           N +  L  + F+ +    IL+IS  R+ SLP     N
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 223

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 35/234 (14%), Positives = 69/234 (29%), Gaps = 6/234 (2%)

Query: 189 NLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFS 248
           +    L + +K+T++  +L R   N  EL     KL+   +    F  F  L+ +EIS +
Sbjct: 9   SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQN 63

Query: 249 LFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
                       N        +   NN +                +            + 
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
            H      L     + N   +  +       E   + L+ N ++ I   +F         
Sbjct: 124 IHSLQKVLLDIQD-NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN 182

Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLS 422
           +   N ++ +  + F      V LD+   ++         N+   +     NL 
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 25/218 (11%), Positives = 53/218 (24%), Gaps = 6/218 (2%)

Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
           L  N   L     K+  +    F          +K   +  D +   E  + +    L  
Sbjct: 27  LPRNAIELRFVLTKLRVIQKGAFSGFGDL----EKIEISQNDVLEVIEADVFSNLPKLHE 82

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
                  N             +L +  +    +               +     N N   
Sbjct: 83  IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 142

Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316
               +    + E + +  N       ++     +        +  +        F+    
Sbjct: 143 IERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASG 202

Query: 317 LKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSI 354
              + +S   +  + S    NLK+L     S   LK +
Sbjct: 203 PVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLKKL 238

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 11/212 (5%)

Query: 358 SFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPM 417
               + + L +      +  + P+      +   L L +N L  F+L      T      
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQ-- 59

Query: 418 NLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIK 477
            LNL    +T L  +        +         +  +                + FN + 
Sbjct: 60  -LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-----DVSFNRLT 113

Query: 478 HLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFK 537
            L   A   L  L+ L L+ N +  +        P L+ + L+ N ++ L          
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 538 LRILNISHNRLRSLPRDVFSNTIIEKLDISYN 569
           L  L +  N L ++P+  F + ++    +  N
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 9e-06
 Identities = 32/214 (14%), Positives = 58/214 (27%), Gaps = 35/214 (16%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L  +   L L  N +   +         L +L+L                          
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA----------------------- 65

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
                           +   TL  L   + +   +++  L   T      L+ +      
Sbjct: 66  -----------ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
             L        L+E+ L  N L+ +         +L  ++L+ N L  +       L N+
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKL 399
             ++L  N +  I    F     L    L  N  
Sbjct: 175 DTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 23/179 (12%)

Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLF--------------- 309
                L +  N +      +L   T L  +NL+  +++K+  +                 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 310 ----HFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
                      L  + +S N L  +       L EL  + L  N LK++          +
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNN 424
             + L+ N +  +       L NL  L LQ+N L       F +           L  N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF----AFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 12/189 (6%)

Query: 137 LLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLR 196
           L  +   L L  N +   +        +     + N +  E      +  L  L TL L 
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLT---QLNLDRAELTKLQVDGTLPVLGTLDLS 85

Query: 197 CNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFP 256
            N++  L                +   +    L S        L  L+  +   N  +  
Sbjct: 86  HNQLQSLPLLGQTLPAL------TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 257 YYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKR 316
              L      LE L++ NNN+  +    L  L +L+ + L+ N +  I    F       
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS---HL 196

Query: 317 LKEIRLSNN 325
           L    L  N
Sbjct: 197 LPFAFLHGN 205

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 56/299 (18%), Positives = 105/299 (35%), Gaps = 20/299 (6%)

Query: 186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEI 245
           L  +LE+L+  CN +T+L         +L+ L +  N L+ +     + +          
Sbjct: 56  LPPHLESLVASCNSLTELPELPQ----SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 111

Query: 246 SFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIH 305
                 ++ F   I   N N+L+ L     +++ I   +          NL +       
Sbjct: 112 KLPELQNSSFLKIIDVDN-NSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD 170

Query: 306 NNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNM 365
           NN         L    +      L E     NL  L TI    NLLK++           
Sbjct: 171 NNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALN 230

Query: 366 LNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMN-----LN 420
           +      +  +      F+++   +   L +     + LN  SN       +      LN
Sbjct: 231 VRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELN 290

Query: 421 LSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHL 479
           +SNN +  L     +     ++ L  S N + EVP         +L++L++++N ++  
Sbjct: 291 VSNNKLIELPALPPR-----LERLIASFNHLAEVP-----ELPQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 40/297 (13%), Positives = 88/297 (29%), Gaps = 13/297 (4%)

Query: 260 LNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKE 319
           L +    LE L    N++  +      +L SL   N     +S +   L +  +     E
Sbjct: 53  LPELPPHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 111

Query: 320 IRLSNNYLELIESDTFYNLK----ELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI 375
                     ++     N           +L +    + +      L N+  +   +   
Sbjct: 112 KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN 171

Query: 376 KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKK 435
             +     + L     +   +   +   L     +T+     NL  +   +    E    
Sbjct: 172 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 231

Query: 436 QAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL 495
           +        +L  +         + +    L       N   +   +       LE L++
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLP 552
            +N +  +        P L+ +  SFN ++ +          L+ L++ +N LR  P
Sbjct: 292 SNNKLIELPA----LPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFP 340

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 56/379 (14%), Positives = 114/379 (30%), Gaps = 76/379 (20%)

Query: 101 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFR 160
           L+L++  LS L                        +L  +LE+L+  CN +T+L      
Sbjct: 43  LELNNLGLSSL-----------------------PELPPHLESLVASCNSLTEL------ 73

Query: 161 HLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITD-------LNGNLFRHLYN 213
                                   +L  +L++LL+  N +         L      +   
Sbjct: 74  -----------------------PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL 110

Query: 214 LQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMD 273
            +   L  +    I    N            + F    +N+       +NL  L  +  D
Sbjct: 111 EKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD 170

Query: 274 NNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESD 333
           NN++K + +  L   + +   N+        +                L +    L   +
Sbjct: 171 NNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALN 230

Query: 334 TFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLD 393
              N                +    F  L+ +   +   N       +     P+L +L+
Sbjct: 231 VRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELN 290

Query: 394 LQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQE 453
           + +NKL +    +   +        L  S N++  + E  +      +K L +  N ++E
Sbjct: 291 VSNNKLIELP-ALPPRLE------RLIASFNHLAEVPELPQN-----LKQLHVEYNPLRE 338

Query: 454 VPVNFLQTFADSLRKLYLD 472
            P        +S+  L ++
Sbjct: 339 FP-----DIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 49/334 (14%), Positives = 97/334 (29%), Gaps = 43/334 (12%)

Query: 75  LKITNTQIEELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDR 134
           L++ N  +  LP    +   ++E  +L  S N L+ L                       
Sbjct: 43  LELNNLGLSSLP----ELPPHLE--SLVASCNSLTEL----------------------- 73

Query: 135 EKLLSNLETLLLRCNKITDLNG---NLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLE 191
            +L  +L++LL+  N +  L+     L      +    K     N   +   +   ++L+
Sbjct: 74  PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 133

Query: 192 TLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFN 251
            L      +  +     +     +  +L F      + NS        L L  I      
Sbjct: 134 KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI 193

Query: 252 SNEFPYYILNKNL---NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNL 308
             E P       L        L     ++             L  +      ++ +  + 
Sbjct: 194 LEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 253

Query: 309 FHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNI 368
             F+    L       N               L  + +S N L  +          +  +
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERL 309

Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDF 402
           + SFN +  +         NL +L ++ N L++F
Sbjct: 310 IASFNHLAEVPE----LPQNLKQLHVEYNPLREF 339

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 30/191 (15%), Positives = 70/191 (36%), Gaps = 13/191 (6%)

Query: 164 KSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNK 223
              +K      +  D V+  E  L++++ ++   + I  + G   ++L N+ +L L+ NK
Sbjct: 24  AETIKDNLKKKSVTDAVTQNE--LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK 79

Query: 224 LQIIELNSN-------VFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNN 276
           L  I+  +N         D  +   L  +       +    +    ++N L  L    + 
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 277 IKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFY 336
                  +   + S        +      +++       +L+ + LS N++  + +    
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LA 197

Query: 337 NLKELNTITLS 347
            LK L+ + L 
Sbjct: 198 GLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 7e-05
 Identities = 27/211 (12%), Positives = 68/211 (32%), Gaps = 19/211 (9%)

Query: 225 QIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYS 284
           + I + + +  +F      E              +    LN+++ +  +N++IK+++   
Sbjct: 6   ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-- 63

Query: 285 LYNLTSLNYINLEYNKIS----------KIHNNLFHFNIHKRLKEIRLSNNYLELIESDT 334
           +  L ++  + L  NK++               L    +        L       +E + 
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123

Query: 335 FYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPN--AFVNLPNLVKL 392
             ++  L  +    +L       +   + + L  + + +       +      L  L  L
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183

Query: 393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSN 423
            L  N + D  L   + + +      L L +
Sbjct: 184 YLSKNHISD--LRALAGLKNLDV---LELFS 209

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 2/125 (1%)

Query: 265 NTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSN 324
           N  E    +  +++++    L  L  L  + +  + +  +      F+   RL  + LS 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP--DAFHFTPRLSRLNLSF 89

Query: 325 NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFV 384
           N LE +   T   L     +     L  S      +         +   +++        
Sbjct: 90  NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA 149

Query: 385 NLPNL 389
           ++PN 
Sbjct: 150 HMPNA 154

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 43/262 (16%), Positives = 72/262 (27%), Gaps = 9/262 (3%)

Query: 312 NIHKRLKEIRLSNNYLELIES--DTFYNLKELNTITLSYNLLKSIKTTSFKNLNNML-NI 368
               R+  + LS   L        +  NL  LN + +                   L  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 369 VLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITN 428
            ++   +    P+    +  LV LD   N L        S++ +           N I+ 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT---FDGNRISG 163

Query: 429 LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLD 488
              +          S+ +S NR+         TFA+           +   DA+     D
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTG---KIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 489 VLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRL 548
                     N             NL  +DL  N I     +       L  LN+S N L
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 549 RSLPRDVFSNTIIEKLDISYNQ 570
                   +    +    + N+
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNK 302

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 9/111 (8%)

Query: 370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNL 429
           L+   +  +       L  +  LDL  N+L+     + +          L +       L
Sbjct: 5   LAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAAL-------RCLEVLQASDNAL 55

Query: 430 YENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLD 480
              D       ++ L L NNR+Q+            L  L L  N +   +
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 37/218 (16%), Positives = 68/218 (31%), Gaps = 17/218 (7%)

Query: 337 NLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQD 396
            L     I    + +      +  +L+ +  +      +  I       L NL+ L+L+D
Sbjct: 17  ALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 397 N---------KLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLS 447
           N          L        S    K       L +    +L               +L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 448 NNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRT 507
              +    +  +   A      YL     +  D T   NL  L  L  + N I+ +    
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI--SP 190

Query: 508 FIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISH 545
              +PNL  + L  N+IS ++      +  L I+ +++
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	584
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.47

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=4.4e-25  Score=218.99  Aligned_cols=342  Identities=26%  Similarity=0.313  Sum_probs=252.2

Q ss_pred             hccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCC
Q psy11648        186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLN  265 (584)
Q Consensus       186 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~  265 (584)
                      .+.+|++|++++++++.+  +.++.+++|++|++++|++++.   + .+..+++|++|++++|.+.  .++. +  +.++
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l---~-~l~~L~~L~~L~L~~n~i~--~i~~-l--~~l~  110 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI---T-PLKNLTKLVDILMNNNQIA--DITP-L--ANLT  110 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC---G-GGTTCTTCCEEECCSSCCC--CCGG-G--TTCT
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC---c-cccCCcccccccccccccc--cccc-c--cccc
Confidence            578899999999999876  3588899999999999998765   2 4888999999999999885  4554 2  6889


Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEE
Q psy11648        266 TLEWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTIT  345 (584)
Q Consensus       266 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  345 (584)
                      +|+.++++++.++....  ......+.......+.+..+.......  ..............     ..+..........
T Consensus       111 ~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  181 (384)
T d2omza2         111 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLT--SLQQLSFGNQVTDL-----KPLANLTTLERLD  181 (384)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCT--TCSEEEEEESCCCC-----GGGTTCTTCCEEE
T ss_pred             ccccccccccccccccc--ccccccccccccccccccccccccccc--cccccccccccchh-----hhhcccccccccc
Confidence            99999999988887654  344566777777666554333322111  11111111111111     1233344444555


Q ss_pred             ccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCc
Q psy11648        346 LSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNY  425 (584)
Q Consensus       346 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~  425 (584)
                      ...+....  ......+++++.+++++|.+++..+  +..+++|+++++++|.+++.+     .+...+.++.+++++|.
T Consensus       182 ~~~~~~~~--~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~  252 (384)
T d2omza2         182 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQ  252 (384)
T ss_dssp             CCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSC
T ss_pred             cccccccc--ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-----hhhcccccchhccccCc
Confidence            55544332  2345677888888888888887633  456788899999988877643     22345678889999888


Q ss_pred             cccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccc
Q psy11648        426 ITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVK  505 (584)
Q Consensus       426 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  505 (584)
                      +++.++   +..+++|++++++++.+..++.  +..+ +.++.++++.|.+.+..  .+..+++++++++++|.+++.. 
T Consensus       253 l~~~~~---~~~~~~L~~L~l~~~~l~~~~~--~~~~-~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~-  323 (384)
T d2omza2         253 ISNLAP---LSGLTKLTELKLGANQISNISP--LAGL-TALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS-  323 (384)
T ss_dssp             CCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG-
T ss_pred             cCCCCc---ccccccCCEeeccCcccCCCCc--cccc-ccccccccccccccccc--ccchhcccCeEECCCCCCCCCc-
Confidence            887654   3447899999999999887753  5566 88999999999887653  4678899999999999998764 


Q ss_pred             cccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCC
Q psy11648        506 RTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYN  569 (584)
Q Consensus       506 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n  569 (584)
                       .+..+++|++|++++|++++++  .+.++++|++|++++|+++.++. +..+++|+.|+|++|
T Consensus       324 -~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         324 -PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             -ccccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence             3788999999999999998864  48889999999999999999874 788899999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=8.1e-25  Score=217.04  Aligned_cols=343  Identities=22%  Similarity=0.316  Sum_probs=248.0

Q ss_pred             hcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCC
Q psy11648        136 KLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQ  215 (584)
Q Consensus       136 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  215 (584)
                      ..+.+|++|++++++|+.+.                          .+. .+++|++|++++|.+++..+  ++++++|+
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~--------------------------gl~-~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~   91 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSID--------------------------GVE-YLNNLTQINFSNNQLTDITP--LKNLTKLV   91 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCT--------------------------TGG-GCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             HHhCCCCEEECCCCCCCCcc--------------------------ccc-cCCCCCEEeCcCCcCCCCcc--ccCCcccc
Confidence            34568999999999887752                          122 68999999999999998754  89999999


Q ss_pred             EEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCccccccccccccCCCCCcEEE
Q psy11648        216 ELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYIN  295 (584)
Q Consensus       216 ~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  295 (584)
                      +|++++|.+.+.    ..+..+++|+.|+++++.+.  .++..   .....+.......+.+..................
T Consensus        92 ~L~L~~n~i~~i----~~l~~l~~L~~L~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  162 (384)
T d2omza2          92 DILMNNNQIADI----TPLANLTNLTGLTLFNNQIT--DIDPL---KNLTNLNRLELSSNTISDISALSGLTSLQQLSFG  162 (384)
T ss_dssp             EEECCSSCCCCC----GGGTTCTTCCEEECCSSCCC--CCGGG---TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE
T ss_pred             cccccccccccc----cccccccccccccccccccc--ccccc---cccccccccccccccccccccccccccccccccc
Confidence            999999998765    34888999999999998875  44433   3566777887777776655432222222222222


Q ss_pred             cccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCC
Q psy11648        296 LEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQI  375 (584)
Q Consensus       296 l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  375 (584)
                      ........+..       ...........+....  ......++.++.+++++|.+.+..+  ...+++|+.+++++|.+
T Consensus       163 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l  231 (384)
T d2omza2         163 NQVTDLKPLAN-------LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL  231 (384)
T ss_dssp             ESCCCCGGGTT-------CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             cccchhhhhcc-------cccccccccccccccc--ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCC
Confidence            22222221111       2333334444443332  2234567778888888888777643  34567888888888887


Q ss_pred             CccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCC
Q psy11648        376 KYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVP  455 (584)
Q Consensus       376 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  455 (584)
                      ++.  ..+..+++|+.+++++|.+++...     ....+.++.++++++.++..+.   ...++.++.+++..|.++.++
T Consensus       232 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~~~l~~~~~---~~~~~~l~~l~~~~n~l~~~~  301 (384)
T d2omza2         232 KDI--GTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDIS  301 (384)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCG
T ss_pred             CCc--chhhcccccchhccccCccCCCCc-----ccccccCCEeeccCcccCCCCc---ccccccccccccccccccccc
Confidence            765  356677888888888888776532     2345678888888888776554   334678899999999888764


Q ss_pred             hhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCC
Q psy11648        456 VNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFS  535 (584)
Q Consensus       456 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~  535 (584)
                        .+..+ ++++.|++++|++.++.+  +..+++|++|++++|.+++.  ..+.++++|++|++++|++++++|  +.++
T Consensus       302 --~~~~~-~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~l~~--l~~l  372 (384)
T d2omza2         302 --PISNL-KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL  372 (384)
T ss_dssp             --GGGGC-TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCBCGG--GTTC
T ss_pred             --ccchh-cccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC--hhHcCCCCCCEEECCCCcCCCChh--hccC
Confidence              35566 899999999999987653  77899999999999999864  358899999999999999998876  7889


Q ss_pred             CCccEEEcCCC
Q psy11648        536 FKLRILNISHN  546 (584)
Q Consensus       536 ~~L~~L~L~~n  546 (584)
                      ++|++|+|++|
T Consensus       373 ~~L~~L~L~~N  383 (384)
T d2omza2         373 TRITQLGLNDQ  383 (384)
T ss_dssp             TTCSEEECCCE
T ss_pred             CCCCEeeCCCC
Confidence            99999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=7e-24  Score=202.77  Aligned_cols=256  Identities=21%  Similarity=0.279  Sum_probs=170.2

Q ss_pred             CccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecC
Q psy11648        316 RLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQ  395 (584)
Q Consensus       316 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  395 (584)
                      .+++|++++|.++.+.+..|..+++|+++++++|.+..+.+..|..++.|+.+++++|.++.+...   ..+.++.++..
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~---~~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS---CCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc---hhhhhhhhhcc
Confidence            344444444444444433444445555555555555544444455555555555555555444211   12345555555


Q ss_pred             CCCCCCCChhhhcccccCCCCceEECCCCccccccc-cccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCC
Q psy11648        396 DNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYE-NDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN  474 (584)
Q Consensus       396 ~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n  474 (584)
                      +|.+.......+...   .....+....+....... ...+..+++|+.+++++|.+..++...    +++|++|++++|
T Consensus       109 ~n~l~~l~~~~~~~~---~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~----~~~L~~L~l~~n  181 (305)
T d1xkua_         109 ENEITKVRKSVFNGL---NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGN  181 (305)
T ss_dssp             SSCCCBBCHHHHTTC---TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTS
T ss_pred             ccchhhhhhhhhhcc---ccccccccccccccccCCCccccccccccCccccccCCccccCccc----CCccCEEECCCC
Confidence            555555444333221   233444444443222111 122344678899999999888776432    288999999999


Q ss_pred             cccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCcc
Q psy11648        475 EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRD  554 (584)
Q Consensus       475 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~  554 (584)
                      ......+..|.+++.+++|++++|.+.+..+..+.++++|++|++++|+++.++ ..+..+++|++|++++|+|+.|+..
T Consensus       182 ~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp-~~l~~l~~L~~L~Ls~N~i~~i~~~  260 (305)
T d1xkua_         182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSN  260 (305)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-TTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             cCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccc-cccccccCCCEEECCCCccCccChh
Confidence            888888888899999999999999999888888999999999999999998875 5788899999999999999988765


Q ss_pred             ccC-------CCCcceEECCCCCCC--CCCCCCCCCC
Q psy11648        555 VFS-------NTIIEKLDISYNQDK--IRPGRESNPR  582 (584)
Q Consensus       555 l~~-------~~~L~~l~l~~n~l~--~~p~~~~~~~  582 (584)
                      .+.       .++|+.|++++|++.  .+++..|+-+
T Consensus       261 ~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             hccCcchhcccCCCCEEECCCCcCccCcCCHhHhccc
Confidence            443       478999999999987  7888877653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.1e-22  Score=194.41  Aligned_cols=158  Identities=25%  Similarity=0.344  Sum_probs=76.3

Q ss_pred             cCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCC
Q psy11648        188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL  267 (584)
Q Consensus       188 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L  267 (584)
                      +.++.|.+.++.+.......+......+.++...+...........+..+++|+.+++++|.+.  .++..    .+++|
T Consensus       100 ~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~--~l~~~----~~~~L  173 (305)
T d1xkua_         100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--TIPQG----LPPSL  173 (305)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC--SCCSS----CCTTC
T ss_pred             hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc--ccCcc----cCCcc
Confidence            4455555555555554444455555555555554432211112334444445555555554442  33322    23455


Q ss_pred             CEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEcc
Q psy11648        268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLS  347 (584)
Q Consensus       268 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  347 (584)
                      ++|++++|......+..+..++.+++|++++|.+..++...+..  +++|++|++++|.++.+ +..+..+++|+.|+++
T Consensus       174 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~--l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--TPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLH  250 (305)
T ss_dssp             SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--STTCCEEECCSSCCSSC-CTTTTTCSSCCEEECC
T ss_pred             CEEECCCCcCCCCChhHhhccccccccccccccccccccccccc--cccceeeeccccccccc-ccccccccCCCEEECC
Confidence            55555555555544445555555555555555555554444443  45555555555554443 2234445555555555


Q ss_pred             CCcCCCc
Q psy11648        348 YNLLKSI  354 (584)
Q Consensus       348 ~~~~~~~  354 (584)
                      +|.++.+
T Consensus       251 ~N~i~~i  257 (305)
T d1xkua_         251 NNNISAI  257 (305)
T ss_dssp             SSCCCCC
T ss_pred             CCccCcc
Confidence            5544433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.1e-23  Score=195.00  Aligned_cols=222  Identities=23%  Similarity=0.315  Sum_probs=140.4

Q ss_pred             EEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEecc-C
Q psy11648        294 INLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLS-F  372 (584)
Q Consensus       294 L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-~  372 (584)
                      ++.++..++.+|..+     .+.+++|++++|.++.+.+..|..++.|+++++++|.+..+.+..+...+.+..+... .
T Consensus        16 v~c~~~~L~~iP~~i-----p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          16 TSCPQQGLQAVPVGI-----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EECCSSCCSSCCTTC-----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCCCCccCCCC-----CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            344455555555432     3445666666666665555556666666666666666666555555556666666543 3


Q ss_pred             CCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCC
Q psy11648        373 NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQ  452 (584)
Q Consensus       373 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~  452 (584)
                      +.+..+.+..+..+++|++|+++.|.+.......+..                            .++|+.+++++|.++
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----------------------------~~~L~~l~l~~N~l~  142 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG----------------------------LAALQYLYLQDNALQ  142 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----------------------------CTTCCEEECCSSCCC
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccch----------------------------hcccchhhhcccccc
Confidence            4455555566667777777777777655443322211                            355666666666666


Q ss_pred             CCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccc
Q psy11648        453 EVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQF  532 (584)
Q Consensus       453 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~  532 (584)
                      .++...|+.+ ++|++|++++|++..+++.+|.++++|+++++++|.+.+..|..|..+++|++|++++|++.++++..|
T Consensus       143 ~i~~~~f~~~-~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~  221 (284)
T d1ozna_         143 ALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL  221 (284)
T ss_dssp             CCCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred             ccChhHhccc-cchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccc
Confidence            6665666655 667777777777766666666777777777777777776666667777777777777777777777667


Q ss_pred             cCCCCccEEEcCCCcCC
Q psy11648        533 YFSFKLRILNISHNRLR  549 (584)
Q Consensus       533 ~~~~~L~~L~L~~n~l~  549 (584)
                      ..+++|++|++++|.++
T Consensus       222 ~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         222 APLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTCTTCCEEECCSSCEE
T ss_pred             ccccccCEEEecCCCCC
Confidence            77777777777776655

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=2.3e-23  Score=199.92  Aligned_cols=227  Identities=18%  Similarity=0.171  Sum_probs=145.3

Q ss_pred             cCCccEEEcCC-CcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEE
Q psy11648        314 HKRLKEIRLSN-NYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKL  392 (584)
Q Consensus       314 ~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  392 (584)
                      +++|++|++++ |.+++..|..+..+++|++|++++|.+.+..+..+..+..|+.++++.|.+....|..+..++.++.+
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            33344444432 33333333444455555555555555555444445555555555555555555555555555666666


Q ss_pred             ecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEcc
Q psy11648        393 DLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLD  472 (584)
Q Consensus       393 ~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  472 (584)
                      ++++|.+.+..+..+...                           ...++.++++.|+++...+..+..  .....+++.
T Consensus       155 ~l~~n~l~~~ip~~~~~l---------------------------~~l~~~l~~~~n~l~~~~~~~~~~--l~~~~l~l~  205 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSF---------------------------SKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLS  205 (313)
T ss_dssp             ECCSSCCEEECCGGGGCC---------------------------CTTCCEEECCSSEEEEECCGGGGG--CCCSEEECC
T ss_pred             eccccccccccccccccc---------------------------cccccccccccccccccccccccc--ccccccccc
Confidence            666555544332222211                           122355666666665444444544  345567888


Q ss_pred             CCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC-cc
Q psy11648        473 FNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR-SL  551 (584)
Q Consensus       473 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~l  551 (584)
                      .+...+..+..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++..|..+..+++|++|+|++|+|+ .+
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence            887777777777888889999999888877655 5788889999999999998877888888999999999999988 57


Q ss_pred             CccccCCCCcceEECCCCCC
Q psy11648        552 PRDVFSNTIIEKLDISYNQD  571 (584)
Q Consensus       552 p~~l~~~~~L~~l~l~~n~l  571 (584)
                      | ....+++|+.+++++|+.
T Consensus       285 P-~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         285 P-QGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             C-CSTTGGGSCGGGTCSSSE
T ss_pred             C-CcccCCCCCHHHhCCCcc
Confidence            7 456778899999999974

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=1.3e-22  Score=194.61  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=45.3

Q ss_pred             CCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEc
Q psy11648        464 DSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNI  543 (584)
Q Consensus       464 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L  543 (584)
                      ++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|..+.++++|++|++++|++++..|+ +.++++|+.+++
T Consensus       221 ~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l  298 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAY  298 (313)
T ss_dssp             SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGT
T ss_pred             cccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHh
Confidence            445555555555443332 344455566666666666655555566666666666666666544443 345556666666


Q ss_pred             CCCc
Q psy11648        544 SHNR  547 (584)
Q Consensus       544 ~~n~  547 (584)
                      ++|+
T Consensus       299 ~~N~  302 (313)
T d1ogqa_         299 ANNK  302 (313)
T ss_dssp             CSSS
T ss_pred             CCCc
Confidence            6664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.2e-21  Score=180.73  Aligned_cols=198  Identities=23%  Similarity=0.285  Sum_probs=146.7

Q ss_pred             CCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccE
Q psy11648        364 NMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKS  443 (584)
Q Consensus       364 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~  443 (584)
                      .+.+++.+++.++.+ |..+.  +.+++|++++|.+++++...|..   .+.|+.|++++|.++.++..   ..+++|++
T Consensus        11 ~~~~v~C~~~~L~~i-P~~lp--~~l~~L~Ls~N~i~~l~~~~f~~---l~~L~~L~L~~N~l~~l~~~---~~l~~L~~   81 (266)
T d1p9ag_          11 SHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMP---YTRLTQLNLDRAELTKLQVD---GTLPVLGT   81 (266)
T ss_dssp             TCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTT---CTTCCEEECTTSCCCEEECC---SCCTTCCE
T ss_pred             CCeEEEccCCCCCee-CcCcC--cCCCEEECcCCcCCCcCHHHhhc---cccccccccccccccccccc---cccccccc
Confidence            333444444444443 22221  34555555555555444433332   23455555555555544322   23678888


Q ss_pred             EEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCC
Q psy11648        444 LDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNE  523 (584)
Q Consensus       444 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~  523 (584)
                      |++++|+++..+ ..+..+ ++|+.|++++|.+.......+..+.++++|++++|.+....+..+..+++|+.+++++|+
T Consensus        82 L~Ls~N~l~~~~-~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          82 LDLSHNQLQSLP-LLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EECCSSCCSSCC-CCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccccccccc-cccccc-cccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            888888887766 456666 889999999998888888888889999999999999988888888889999999999999


Q ss_pred             CCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        524 ISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       524 i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                      ++++++..|..+++|++|+|++|+|+.+|+.++.+++|+.|++++|++.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            9999988898999999999999999999999999999999999999876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-21  Score=185.23  Aligned_cols=252  Identities=25%  Similarity=0.301  Sum_probs=160.3

Q ss_pred             EEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEcc-C
Q psy11648        270 LAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLS-Y  348 (584)
Q Consensus       270 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~-~  348 (584)
                      ++.+++.++.+|. .+  .+.+++|++++|+++.++...+..  ++.|++++++++.+....+..+..+..++++... .
T Consensus        16 v~c~~~~L~~iP~-~i--p~~~~~L~Ls~N~i~~i~~~~f~~--l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          16 TSCPQQGLQAVPV-GI--PAASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EECCSSCCSSCCT-TC--CTTCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCCCCccCC-CC--CCCCCEEECcCCcCCCCCHHHhhc--cccccccccccccccccccccccccccccccccccc
Confidence            3444444444432 12  234566666666666665555544  5666666666666665555555566666666554 3


Q ss_pred             CcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCcccc
Q psy11648        349 NLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITN  428 (584)
Q Consensus       349 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~  428 (584)
                      +.+..+.+..+.++++|+.++++.|.+....+..+...++|+.+++.+|.+++++...|..                   
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~-------------------  151 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-------------------  151 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc-------------------
Confidence            3555555666777777888888877777666666777778888888888877765544432                   


Q ss_pred             ccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCccccccccccc
Q psy11648        429 LYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTF  508 (584)
Q Consensus       429 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  508 (584)
                               +++++.|++++|++..++...|.++ ++|+.+++++|++.++.+..|.++++|++|++++|.+.+..+..|
T Consensus       152 ---------~~~L~~L~l~~N~l~~l~~~~f~~l-~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~  221 (284)
T d1ozna_         152 ---------LGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL  221 (284)
T ss_dssp             ---------CTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred             ---------ccchhhcccccCcccccchhhhccc-cccchhhhhhccccccChhHhhhhhhccccccccccccccccccc
Confidence                     3567777777777777766777776 777777777777777777777777788888888887777777777


Q ss_pred             CCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC-ccCcccc
Q psy11648        509 IGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR-SLPRDVF  556 (584)
Q Consensus       509 ~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~-~lp~~l~  556 (584)
                      +.+++|++|++++|++...-+. ..-...++.+....++++ +.|..+.
T Consensus       222 ~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         222 APLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             TTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             ccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCchHHc
Confidence            7788888888887776532111 000123444444545555 4555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=8.8e-18  Score=163.63  Aligned_cols=181  Identities=24%  Similarity=0.263  Sum_probs=125.3

Q ss_pred             cCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCC
Q psy11648        188 SNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTL  267 (584)
Q Consensus       188 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L  267 (584)
                      .++++|++++++++.++.    ..++|++|++++|+++.+   |..   +.+|++|++++|.+.  .++.     -.+.|
T Consensus        38 ~~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~l---p~~---~~~L~~L~l~~n~l~--~l~~-----lp~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTEL---PEL---PQSLKSLLVDNNNLK--ALSD-----LPPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSSC---CCC---CTTCCEEECCSSCCS--CCCS-----CCTTC
T ss_pred             cCCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCccc---ccc---hhhhhhhhhhhcccc--hhhh-----hcccc
Confidence            579999999999887643    257899999999988764   443   357899999998875  4542     23469


Q ss_pred             CEEEccCccccccccccccCCCCCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEcc
Q psy11648        268 EWLAMDNNNIKNIRNYSLYNLTSLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLS  347 (584)
Q Consensus       268 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  347 (584)
                      ++|++++|.+..++.  +..+++|++++++++.+...+..      ...+..+.+..+.....  ..+..++.++.+.+.
T Consensus       101 ~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~~------~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_         101 EYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQLEEL--PELQNLPFLTAIYAD  170 (353)
T ss_dssp             CEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSSC--CCCTTCTTCCEEECC
T ss_pred             ccccccccccccccc--hhhhccceeeccccccccccccc------cccccchhhcccccccc--ccccccccceecccc
Confidence            999999999887763  67788999999998887766553      45666777766555432  345667788888888


Q ss_pred             CCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCC
Q psy11648        348 YNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKD  401 (584)
Q Consensus       348 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  401 (584)
                      ++.......    .....+.+......+...  ..+..++.++.+++++|....
T Consensus       171 ~n~~~~~~~----~~~~~~~l~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~~  218 (353)
T d1jl5a_         171 NNSLKKLPD----LPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKT  218 (353)
T ss_dssp             SSCCSSCCC----CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccccc----cccccccccccccccccc--ccccccccccccccccccccc
Confidence            877654321    122344555555544443  235567788888888776554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.8e-19  Score=167.70  Aligned_cols=197  Identities=24%  Similarity=0.292  Sum_probs=95.9

Q ss_pred             CCcEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCCcChhhhccCcCCCEEe
Q psy11648        290 SLNYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIV  369 (584)
Q Consensus       290 ~L~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  369 (584)
                      .+.+++.+++.++.+|..+     .+.+++|++++|.++.+.+..|..+++|++|++++|.++.+.  .+..+++|+.|+
T Consensus        11 ~~~~v~C~~~~L~~iP~~l-----p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~   83 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL-----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLD   83 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC-----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEE
T ss_pred             CCeEEEccCCCCCeeCcCc-----CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccccc
Confidence            3444455555555554432     234455555555555444444555555555555555544331  123445555555


Q ss_pred             ccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCC
Q psy11648        370 LSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNN  449 (584)
Q Consensus       370 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~  449 (584)
                      +++|.+... +..+..+++|+.|+++++.+.......+.                            ...+++.+++++|
T Consensus        84 Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----------------------------~l~~l~~L~l~~n  134 (266)
T d1p9ag_          84 LSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR----------------------------GLGELQELYLKGN  134 (266)
T ss_dssp             CCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTT----------------------------TCTTCCEEECTTS
T ss_pred             ccccccccc-ccccccccccccccccccccceeeccccc----------------------------ccccccccccccc
Confidence            555555443 33444555555555555554433222211                            1344555555555


Q ss_pred             CCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCC
Q psy11648        450 RIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEI  524 (584)
Q Consensus       450 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i  524 (584)
                      .+..++...+..+ ++++.+++++|++.++++..|..+++|++|+|++|.++ .+|+.+..+++|+.|+|++|.+
T Consensus       135 ~l~~l~~~~~~~l-~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         135 ELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCCCCCTTTTTTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccceecccccccc-ccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            5555554444444 55555555555555555555555555555555555554 3344444555555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=2.7e-17  Score=160.15  Aligned_cols=71  Identities=18%  Similarity=0.191  Sum_probs=38.9

Q ss_pred             ccccccccccccccccc--ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceeeeecC
Q psy11648         27 HLGTTILKGDQLQGIFN--SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMTLDLS  104 (584)
Q Consensus        27 ~Lr~L~l~~~~l~~l~~--~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~L~ls  104 (584)
                      ++++||+++++++.+|.  ++|++|++++|++++++ +.+    .+|+ +|++++|+++.++.    ....|+  +|+++
T Consensus        39 ~l~~LdLs~~~L~~lp~~~~~L~~L~Ls~N~l~~lp-~~~----~~L~-~L~l~~n~l~~l~~----lp~~L~--~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPELPPHLESLVASCNSLTELP-ELP----QSLK-SLLVDNNNLKALSD----LPPLLE--YLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCC-CCC----TTCC-EEECCSSCCSCCCS----CCTTCC--EEECC
T ss_pred             CCCEEEeCCCCCCCCCCCCCCCCEEECCCCCCcccc-cch----hhhh-hhhhhhcccchhhh----hccccc--ccccc
Confidence            45666666666666665  56666666666665542 222    3455 66666665554432    122355  66666


Q ss_pred             CCcee
Q psy11648        105 HNKLS  109 (584)
Q Consensus       105 ~~~l~  109 (584)
                      +|.+.
T Consensus       107 ~n~l~  111 (353)
T d1jl5a_         107 NNQLE  111 (353)
T ss_dssp             SSCCS
T ss_pred             ccccc
Confidence            65554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7e-21  Score=193.10  Aligned_cols=111  Identities=16%  Similarity=0.108  Sum_probs=64.0

Q ss_pred             CcccEEEccCCCCCCCChhhHHHh---hCCCcEEEccCCcccccCc----ccc-CCCcccCeeeccCcccccc----ccc
Q psy11648        439 IYIKSLDLSNNRIQEVPVNFLQTF---ADSLRKLYLDFNEIKHLDA----TAF-GNLDVLELLSLEHNNIAVV----VKR  506 (584)
Q Consensus       439 ~~L~~L~l~~~~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~----~~l-~~l~~L~~L~l~~n~~~~~----~~~  506 (584)
                      ..|+.++++++.++......+..+   .++|++|++++|++++...    ..+ ...+.|++|++++|.+++.    +..
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            456777777766654333333221   1567777777777653221    122 2345677777777777653    233


Q ss_pred             ccCCCCCccEEECCCCCCCCcCcccc----c-CCCCccEEEcCCCcCC
Q psy11648        507 TFIGMPNLQIIDLSFNEISMLTGEQF----Y-FSFKLRILNISHNRLR  549 (584)
Q Consensus       507 ~~~~~~~L~~L~ls~n~i~~~~~~~~----~-~~~~L~~L~L~~n~l~  549 (584)
                      .+..+++|++|++++|++++.....+    . +..+|+.|++.+|.+.
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            45566777777777777764222222    1 2346777777777766

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.9e-20  Score=185.67  Aligned_cols=141  Identities=16%  Similarity=0.066  Sum_probs=65.0

Q ss_pred             hcCCCCCEEEccCccccc-----cccccccCCCCCcEEEcccCCCcccccccc--cccccCCccEEEcCCCcccccccc-
Q psy11648        262 KNLNTLEWLAMDNNNIKN-----IRNYSLYNLTSLNYINLEYNKISKIHNNLF--HFNIHKRLKEIRLSNNYLELIESD-  333 (584)
Q Consensus       262 ~~~~~L~~L~l~~~~l~~-----~~~~~l~~l~~L~~L~l~~~~l~~i~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~-  333 (584)
                      ...+.++.++++++.+..     ...........++.+++++|.+........  .....+.++.+++++|.+...... 
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            345556666666654431     111223344556666666665542211000  001145566666666655431111 


Q ss_pred             ----cccCCCCCcEEEccCCcCCCcChhh----hccCcCCCEEeccCCCCCccC----CccC-CCCCCCcEEecCCCCCC
Q psy11648        334 ----TFYNLKELNTITLSYNLLKSIKTTS----FKNLNNMLNIVLSFNQIKYIY----PNAF-VNLPNLVKLDLQDNKLK  400 (584)
Q Consensus       334 ----~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~-~~~~~L~~L~l~~~~l~  400 (584)
                          .......|+.++++++.++......    +...+.|++|++++|.+++..    ...+ ...+.|++|++++|.++
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~  382 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  382 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence                1122345666666666555432222    223445666666666654321    1112 13455666666666655


Q ss_pred             CC
Q psy11648        401 DF  402 (584)
Q Consensus       401 ~~  402 (584)
                      +.
T Consensus       383 ~~  384 (460)
T d1z7xw1         383 DS  384 (460)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.9e-18  Score=154.38  Aligned_cols=221  Identities=24%  Similarity=0.282  Sum_probs=125.7

Q ss_pred             cEEEcccCCCcccccccccccccCCccEEEcCCCcccccccccccCCCCCcEEEccCCcCCC-cChhhhccCcCCCEEec
Q psy11648        292 NYINLEYNKISKIHNNLFHFNIHKRLKEIRLSNNYLELIESDTFYNLKELNTITLSYNLLKS-IKTTSFKNLNNMLNIVL  370 (584)
Q Consensus       292 ~~L~l~~~~l~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l  370 (584)
                      +.++.++..++.+|..+     .+++++|++++|.++.+....|.++++|+++++++|.+.. +.+..|..++.++++.+
T Consensus        11 ~~i~c~~~~l~~iP~~l-----~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL-----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCSSCCSCS-----CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCCCCCcCCCC-----CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            44555555555555433     2345556666665555555555666666666666665544 22334556666666665


Q ss_pred             cC-CCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCC
Q psy11648        371 SF-NQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNN  449 (584)
Q Consensus       371 ~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~  449 (584)
                      .. +.+....+..+..+++|+++++++|.+.......+  .                         .....+..+...++
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~--~-------------------------~~l~~l~~~~~~n~  138 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--I-------------------------HSLQKVLLDIQDNI  138 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTT--T-------------------------CBSSCEEEEEESCT
T ss_pred             cccccccccccccccccccccccccchhhhcccccccc--c-------------------------cccccccccccccc
Confidence            43 45555555666677777777777776654322111  0                         11233444444555


Q ss_pred             CCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCc
Q psy11648        450 RIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTG  529 (584)
Q Consensus       450 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~  529 (584)
                      .+..++...+.+++..++.|++++|++..+....+......+.+++.+|.++.+.+..|.++++|++|++++|+++.+++
T Consensus       139 ~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS
T ss_pred             ccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH
Confidence            55555555555543567777777777766655555433223333456666665555567777777777777777777766


Q ss_pred             ccccCCCCccEEEcC
Q psy11648        530 EQFYFSFKLRILNIS  544 (584)
Q Consensus       530 ~~~~~~~~L~~L~L~  544 (584)
                      ..|.++++|+.+++.
T Consensus       219 ~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         219 YGLENLKKLRARSTY  233 (242)
T ss_dssp             SSCTTCCEEESSSEE
T ss_pred             HHHcCCcccccCcCC
Confidence            666666666655554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=8.7e-17  Score=145.50  Aligned_cols=188  Identities=22%  Similarity=0.346  Sum_probs=119.2

Q ss_pred             cCCCCCcEEEccCCcCCCcChhhhccCcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCC
Q psy11648        336 YNLKELNTITLSYNLLKSIKTTSFKNLNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQT  415 (584)
Q Consensus       336 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  415 (584)
                      ..+.+|++|++.+|.++.+  ..+..+++|+.+++++|.+++..  .+..+++++.+++++|.++.+             
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i-------------  100 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV-------------  100 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC-------------
T ss_pred             HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc-------------
Confidence            3445556666666655544  23455566666666666555442  255555666666655554432             


Q ss_pred             CceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648        416 PMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL  495 (584)
Q Consensus       416 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  495 (584)
                                    ..   ...+++|+.++++++....++  .+... +.++.+.++.+.+....  .+..+++|++|++
T Consensus       101 --------------~~---l~~l~~L~~l~l~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l  158 (227)
T d1h6ua2         101 --------------SA---IAGLQSIKTLDLTSTQITDVT--PLAGL-SNLQVLYLDLNQITNIS--PLAGLTNLQYLSI  158 (227)
T ss_dssp             --------------GG---GTTCTTCCEEECTTSCCCCCG--GGTTC-TTCCEEECCSSCCCCCG--GGGGCTTCCEEEC
T ss_pred             --------------cc---ccccccccccccccccccccc--hhccc-cchhhhhchhhhhchhh--hhccccccccccc
Confidence                          21   122466777777766655443  23333 66777777777665433  3456677888888


Q ss_pred             cCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECC
Q psy11648        496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDIS  567 (584)
Q Consensus       496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~  567 (584)
                      ++|.+....  .++++++|++|++++|+++++++  +..+++|++|++++|+++.++ .+..+++|+.|+++
T Consensus       159 ~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         159 GNAQVSDLT--PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEE
T ss_pred             cccccccch--hhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEee
Confidence            887776543  36778888888888888877643  677888888888888888876 46677888888876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.5e-16  Score=142.46  Aligned_cols=206  Identities=24%  Similarity=0.300  Sum_probs=141.5

Q ss_pred             hhhhccccccccccccccccc----ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccce
Q psy11648         23 TKLQHLGTTILKGDQLQGIFN----SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQ   98 (584)
Q Consensus        23 ~~l~~Lr~L~l~~~~l~~l~~----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~   98 (584)
                      +.+.++..++++.+.++++..    .+|++|++++|+++++.  .+..+ ++|+ +|++++|++..++.  +..+.+++ 
T Consensus        16 ~~l~~~~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~--~l~~l-~~L~-~L~ls~n~i~~~~~--l~~l~~l~-   88 (227)
T d1h6ua2          16 PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYL-NNLI-GLELKDNQITDLAP--LKNLTKIT-   88 (227)
T ss_dssp             HHHHHHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGC-TTCC-EEECCSSCCCCCGG--GTTCCSCC-
T ss_pred             HHHHHHHHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcch--hHhcC-CCCc-EeecCCceeecccc--cccccccc-
Confidence            345555556777777777443    78888888888888763  46776 7888 88888888876654  45555588 


Q ss_pred             eeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCc
Q psy11648         99 MTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNED  178 (584)
Q Consensus        99 ~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~  178 (584)
                       ++++++|.++...                     .+.++++|++++++++...+...                      
T Consensus        89 -~l~~~~n~~~~i~---------------------~l~~l~~L~~l~l~~~~~~~~~~----------------------  124 (227)
T d1h6ua2          89 -ELELSGNPLKNVS---------------------AIAGLQSIKTLDLTSTQITDVTP----------------------  124 (227)
T ss_dssp             -EEECCSCCCSCCG---------------------GGTTCTTCCEEECTTSCCCCCGG----------------------
T ss_pred             -ccccccccccccc---------------------cccccccccccccccccccccch----------------------
Confidence             8888888765422                     24456788888888876554411                      


Q ss_pred             ccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhh
Q psy11648        179 QVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYY  258 (584)
Q Consensus       179 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~  258 (584)
                          +. ..+.++.+.++++.+....+  +..+++|++|++++|.+...    ..+..+++|++|++++|.+.  .++. 
T Consensus       125 ----~~-~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~Ls~n~l~--~l~~-  190 (227)
T d1h6ua2         125 ----LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL----TPLANLSKLTTLKADDNKIS--DISP-  190 (227)
T ss_dssp             ----GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCC--CCGG-
T ss_pred             ----hc-cccchhhhhchhhhhchhhh--hccccccccccccccccccc----hhhcccccceecccCCCccC--CChh-
Confidence                11 45777778887777665433  66778888888888776543    34667777777777777764  4543 


Q ss_pred             HhhhcCCCCCEEEccCccccccccccccCCCCCcEEEcc
Q psy11648        259 ILNKNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINLE  297 (584)
Q Consensus       259 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  297 (584)
                       + ..+++|++|++++|.++++++  +.++++|++|+++
T Consensus       191 -l-~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         191 -L-ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             -G-GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             -h-cCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence             2 577777788887777776653  6777777777775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.3e-17  Score=150.17  Aligned_cols=215  Identities=19%  Similarity=0.241  Sum_probs=140.4

Q ss_pred             ccccccccccccccc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccc-cccccccccccccceeeeecC
Q psy11648         29 GTTILKGDQLQGIFN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIE-ELPSGLFDKIENIEQMTLDLS  104 (584)
Q Consensus        29 r~L~l~~~~l~~l~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~-~l~~~~~~~~~~L~~~~L~ls  104 (584)
                      +++++++..++.+|+   +++++|++++|.++.+...+|.++ ++|+ +|++++|.+. .++...|.....++  ++++.
T Consensus        11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l-~~L~-~L~ls~n~~~~~i~~~~f~~l~~l~--~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGF-GDLE-KIEISQNDVLEVIEADVFSNLPKLH--EIRIE   86 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTC-TTCC-EEEEESCTTCCEECSSSEESCTTCC--EEEEE
T ss_pred             CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhcc-chhh-hhhhccccccceeeccccccccccc--ccccc
Confidence            567888888888887   689999999999988888888887 8899 9999998876 46777788777788  88765


Q ss_pred             C-CceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchh
Q psy11648        105 H-NKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDR  183 (584)
Q Consensus       105 ~-~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  183 (584)
                      + +.+....+                   ..+..+++|++++++++.+.......                        +
T Consensus        87 ~~n~l~~~~~-------------------~~~~~l~~L~~l~l~~~~l~~~~~~~------------------------~  123 (242)
T d1xwdc1          87 KANNLLYINP-------------------EAFQNLPNLQYLLISNTGIKHLPDVH------------------------K  123 (242)
T ss_dssp             CCTTCCEECT-------------------TSEECCTTCCEEEEESCCCCSCCCCT------------------------T
T ss_pred             cccccccccc-------------------ccccccccccccccchhhhccccccc------------------------c
Confidence            4 34444332                   23556688999999888776653311                        1


Q ss_pred             HhhccCCcEEEcCCCcccccchhhhcCCC-CCCEEEcCCCccceeecCCccccccccceEE-eecccccCCCCchhhHhh
Q psy11648        184 EKLLSNLETLLLRCNKITDLNGNLFRHLY-NLQELSLSFNKLQIIELNSNVFDVFEKLQLL-EISFSLFNSNEFPYYILN  261 (584)
Q Consensus       184 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L-~l~~~~~~~~~l~~~~~~  261 (584)
                      ...+..++.+...++.+..+....+.+++ .++.++++++++..+  ....+. ..+++.+ .+.++.+.  .+|...| 
T Consensus       124 ~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i--~~~~~~-~~~l~~~~~l~~n~l~--~l~~~~f-  197 (242)
T d1xwdc1         124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI--HNCAFN-GTQLDELNLSDNNNLE--ELPNDVF-  197 (242)
T ss_dssp             TCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--CTTTTT-TCCEEEEECTTCTTCC--CCCTTTT-
T ss_pred             cccccccccccccccccccccccccccccccceeeeccccccccc--cccccc-chhhhccccccccccc--cccHHHh-
Confidence            11345566666666666666655665554 677788877777665  333333 2333333 34444453  5555544 


Q ss_pred             hcCCCCCEEEccCccccccccccccCCCCCcEEEc
Q psy11648        262 KNLNTLEWLAMDNNNIKNIRNYSLYNLTSLNYINL  296 (584)
Q Consensus       262 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  296 (584)
                      .++++|++|++++|.++.+++..+.+++.|+.+++
T Consensus       198 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            56666666666666666665555555555544443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.2e-16  Score=140.28  Aligned_cols=173  Identities=20%  Similarity=0.239  Sum_probs=91.8

Q ss_pred             cEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcccEEEccCCCCCCCChhhHHHhhCCCcEE
Q psy11648        390 VKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQEVPVNFLQTFADSLRKL  469 (584)
Q Consensus       390 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L  469 (584)
                      +.++.+++.++.++....      ..+++|++++|+++.......+..+++|++|++++|.+..++...+..+ ++|++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp------~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~-~~L~~L   83 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA-SHIQEL   83 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEE
T ss_pred             CEEEEeCCCcCccCCCCC------CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc-ccccee
Confidence            456666666665543221      2445666666666544444444445566666666666555555555555 556666


Q ss_pred             EccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        470 YLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       470 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      ++++|++..+++.+|.++++|++|+|++|.++.+.+..|..+++|++|++++|.+.......+ -...++.+.+..+.++
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAAR  162 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCB
T ss_pred             eeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeE
Confidence            666666665555556666666666666666655555555666666666666655543221111 0112344444444444


Q ss_pred             -ccCccccCCCCcceEECCCCCCCC
Q psy11648        550 -SLPRDVFSNTIIEKLDISYNQDKI  573 (584)
Q Consensus       550 -~lp~~l~~~~~L~~l~l~~n~l~~  573 (584)
                       ..|..   +..++.++++.|.++.
T Consensus       163 c~~p~~---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         163 CGAPSK---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             BCSSTT---TTTSBGGGSCTTTCCC
T ss_pred             eCCChh---hcCCEeeecCHhhCcC
Confidence             33322   2345556666666653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.2e-15  Score=134.55  Aligned_cols=117  Identities=26%  Similarity=0.347  Sum_probs=77.4

Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII  517 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  517 (584)
                      +++|++|++++|.+..++  .+.++ ++|+.|++++|......  .+..+++|+.+++++|.+...  +.+..+++|+.|
T Consensus        83 l~~L~~L~l~~n~~~~~~--~l~~l-~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L  155 (199)
T d2omxa2          83 LTKLVDILMNNNQIADIT--PLANL-TNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQL  155 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTC-TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             Cccccccccccccccccc--ccccc-ccccccccccccccccc--ccchhhhhHHhhhhhhhhccc--cccccccccccc
Confidence            456666666666665554  24555 66777777766655432  355677777777777776543  346777777777


Q ss_pred             ECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceE
Q psy11648        518 DLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKL  564 (584)
Q Consensus       518 ~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l  564 (584)
                      ++++|+++++.+  +.++++|++|++++|+++.++ .+..+++|++|
T Consensus       156 ~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         156 NFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             ccccccccCCcc--ccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            777777776643  667777777777777777775 46666777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=5.3e-16  Score=136.84  Aligned_cols=180  Identities=23%  Similarity=0.352  Sum_probs=136.6

Q ss_pred             hhhccccccccccccccccc----ccceeeeecCCceeecCCccccccccceeeEEEecCccccccccccccccccccee
Q psy11648         24 KLQHLGTTILKGDQLQGIFN----SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQM   99 (584)
Q Consensus        24 ~l~~Lr~L~l~~~~l~~l~~----~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~   99 (584)
                      .++......++.+.+++++.    +++++|++++|++.++.  .+..+ ++|+ +|++++|+++.++.  +..+.+|+  
T Consensus        16 ~l~~~i~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~--~l~~l-~nL~-~L~Ls~N~l~~~~~--l~~l~~L~--   87 (199)
T d2omxa2          16 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID--GVEYL-NNLT-QINFSNNQLTDITP--LKNLTKLV--   87 (199)
T ss_dssp             HHHHHHHHHTTCSSTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGC-TTCC-EEECCSSCCCCCGG--GTTCTTCC--
T ss_pred             HHHHHHHHHhCCCCCCCccCHHHhcCCCEEECCCCCCCCcc--ccccC-CCcC-cCccccccccCccc--ccCCcccc--
Confidence            34444445777787777543    89999999999998864  46666 8899 99999999988765  55555699  


Q ss_pred             eeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcc
Q psy11648        100 TLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQ  179 (584)
Q Consensus       100 ~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~  179 (584)
                      +|++++|.+....                     .+.++++|+.|+++++.+....                        
T Consensus        88 ~L~l~~n~~~~~~---------------------~l~~l~~L~~L~l~~~~~~~~~------------------------  122 (199)
T d2omxa2          88 DILMNNNQIADIT---------------------PLANLTNLTGLTLFNNQITDID------------------------  122 (199)
T ss_dssp             EEECCSSCCCCCG---------------------GGTTCTTCSEEECCSSCCCCCG------------------------
T ss_pred             ccccccccccccc---------------------cccccccccccccccccccccc------------------------
Confidence            9999998776432                     2456788999999988766542                        


Q ss_pred             cchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhH
Q psy11648        180 VSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYI  259 (584)
Q Consensus       180 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~  259 (584)
                        .+. .+++|+.|++++|.+....  .+..++++++|++++|++.+.    ..+.++++|++|++++|.+.  .++.  
T Consensus       123 --~~~-~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l----~~l~~l~~L~~L~ls~N~i~--~i~~--  189 (199)
T d2omxa2         123 --PLK-NLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL----KPLANLTTLERLDISSNKVS--DISV--  189 (199)
T ss_dssp             --GGT-TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCC--CCGG--
T ss_pred             --ccc-hhhhhHHhhhhhhhhcccc--cccccccccccccccccccCC----ccccCCCCCCEEECCCCCCC--CCcc--
Confidence              122 6788999999999887653  478889999999999988765    35788899999999999885  5653  


Q ss_pred             hhhcCCCCCEE
Q psy11648        260 LNKNLNTLEWL  270 (584)
Q Consensus       260 ~~~~~~~L~~L  270 (584)
                      + +.+++|++|
T Consensus       190 l-~~L~~L~~L  199 (199)
T d2omxa2         190 L-AKLTNLESL  199 (199)
T ss_dssp             G-GGCTTCSEE
T ss_pred             c-cCCCCCCcC
Confidence            2 678888875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=6.7e-16  Score=137.40  Aligned_cols=164  Identities=26%  Similarity=0.351  Sum_probs=89.0

Q ss_pred             CcCCCEEeccCCCCCccCCccCCCCCCCcEEecCCCCCCCCChhhhcccccCCCCceEECCCCccccccccccccccCcc
Q psy11648        362 LNNMLNIVLSFNQIKYIYPNAFVNLPNLVKLDLQDNKLKDFNLNVFSNITSKQTPMNLNLSNNYITNLYENDKKQAPIYI  441 (584)
Q Consensus       362 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L  441 (584)
                      +.+++.+++++|.++..  ..+..+++|++|++++|.+++..+  +                            ..+++|
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~~--~----------------------------~~l~~L   92 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--L----------------------------ANLKNL   92 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--G----------------------------TTCTTC
T ss_pred             hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCccc--c----------------------------ccCccc
Confidence            34555566666555544  124555666666666665554321  1                            113445


Q ss_pred             cEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCC
Q psy11648        442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF  521 (584)
Q Consensus       442 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~  521 (584)
                      ++|++++|++++++  .+..+ ++|+.|++++|.+....  .+..++.++.+++++|.+.+.  ..+..+++|+++++++
T Consensus        93 ~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~  165 (210)
T d1h6ta2          93 GWLFLDENKVKDLS--SLKDL-KKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED  165 (210)
T ss_dssp             CEEECCSSCCCCGG--GGTTC-TTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             cccccccccccccc--ccccc-ccccccccccccccccc--ccccccccccccccccccccc--cccccccccccccccc
Confidence            55555555555443  23344 55555555555544322  344555666666666655543  2344566666666666


Q ss_pred             CCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECC
Q psy11648        522 NEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDIS  567 (584)
Q Consensus       522 n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~  567 (584)
                      |+++++.+  +.++++|++|++++|+|+.+| .+..+++|+.|+|+
T Consensus       166 n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         166 NQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEE
T ss_pred             cccccccc--ccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEcc
Confidence            66665533  556666666666666666665 45556666666664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=8.1e-16  Score=136.83  Aligned_cols=183  Identities=25%  Similarity=0.320  Sum_probs=135.2

Q ss_pred             hhccccccccccccccc-cc---ccceeeeecCCceeecCCccccccccceeeEEEecCcccccccccccccccccceee
Q psy11648         25 LQHLGTTILKGDQLQGI-FN---SKLRELEITGKDLKFIDPSAFDNIDACYDLTLKITNTQIEELPSGLFDKIENIEQMT  100 (584)
Q Consensus        25 l~~Lr~L~l~~~~l~~l-~~---~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~L~~~~  100 (584)
                      +.+....+++.+.+++. +.   .++++|++++|.++++..  +..+ ++|+ +|++++|+++.++. + ..+.+|+  +
T Consensus        23 l~~~i~~~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~~--l~~l-~~L~-~L~L~~n~i~~l~~-~-~~l~~L~--~   94 (210)
T d1h6ta2          23 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYL-PNVT-KLFLNGNKLTDIKP-L-ANLKNLG--W   94 (210)
T ss_dssp             HHHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGC-TTCC-EEECCSSCCCCCGG-G-TTCTTCC--E
T ss_pred             HHHHHHHHhCcCccCCccCHHHhcCccEEECcCCCCCCchh--HhhC-CCCC-EEeCCCccccCccc-c-ccCcccc--c
Confidence            33444446777777663 32   788999999999888643  6666 8899 99999999988774 3 4455599  9


Q ss_pred             eecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCccc
Q psy11648        101 LDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQV  180 (584)
Q Consensus       101 L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  180 (584)
                      |++++|++++..                     .+.++++|+.|++++|.+..+.                         
T Consensus        95 L~l~~n~i~~l~---------------------~l~~l~~L~~L~l~~~~~~~~~-------------------------  128 (210)
T d1h6ta2          95 LFLDENKVKDLS---------------------SLKDLKKLKSLSLEHNGISDIN-------------------------  128 (210)
T ss_dssp             EECCSSCCCCGG---------------------GGTTCTTCCEEECTTSCCCCCG-------------------------
T ss_pred             cccccccccccc---------------------cccccccccccccccccccccc-------------------------
Confidence            999999886532                     2456788999999988766541                         


Q ss_pred             chhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchhhHh
Q psy11648        181 SDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYIL  260 (584)
Q Consensus       181 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~  260 (584)
                       .+. .++.++.++++++.++...  .+..+++|+++++++|++.+.    ..+..+++|++|++++|.+.  .++. + 
T Consensus       129 -~l~-~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i----~~l~~l~~L~~L~Ls~N~i~--~l~~-l-  196 (210)
T d1h6ta2         129 -GLV-HLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI----VPLAGLTKLQNLYLSKNHIS--DLRA-L-  196 (210)
T ss_dssp             -GGG-GCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCC--BCGG-G-
T ss_pred             -ccc-ccccccccccccccccccc--ccccccccccccccccccccc----ccccCCCCCCEEECCCCCCC--CChh-h-
Confidence             222 6788889999888887653  366788899999998887654    24778888999999988875  5663 3 


Q ss_pred             hhcCCCCCEEEccC
Q psy11648        261 NKNLNTLEWLAMDN  274 (584)
Q Consensus       261 ~~~~~~L~~L~l~~  274 (584)
                       ..+++|++|++++
T Consensus       197 -~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         197 -AGLKNLDVLELFS  209 (210)
T ss_dssp             -TTCTTCSEEEEEE
T ss_pred             -cCCCCCCEEEccC
Confidence             6888999998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=4.2e-16  Score=136.67  Aligned_cols=155  Identities=19%  Similarity=0.274  Sum_probs=114.3

Q ss_pred             ceEECCCCccccccccccccccCcccEEEccCCCCCC-CChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeec
Q psy11648        417 MNLNLSNNYITNLYENDKKQAPIYIKSLDLSNNRIQE-VPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSL  495 (584)
Q Consensus       417 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  495 (584)
                      ++++.+++.++.+|...    ++++++|++++|.++. ++...|.++ ++|++|++++|.+...++..|..+++|++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~l----p~~l~~L~Ls~N~i~~~~~~~~f~~l-~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI----PLHTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCSSCCSCC----CTTCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEEeCCCcCccCCCC----CCCCCEEEeCCCCCcccccccccCCC-ceEeeeeccccccccccccccccccccceeee
Confidence            56777778887776543    3678888888888864 555667777 88888888888888777777888888888888


Q ss_pred             cCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCCccCccccCCCCcceEECCCCCCC-CC
Q psy11648        496 EHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLRSLPRDVFSNTIIEKLDISYNQDK-IR  574 (584)
Q Consensus       496 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~-~~  574 (584)
                      ++|.+..+.+..|.++++|++|+|++|+++.++++.|..+++|++|+|++|.+.......+....++...+..+.++ ..
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCC
Confidence            88888877777788888888888888888888888888888888888888877754332222245666666666665 44


Q ss_pred             CC
Q psy11648        575 PG  576 (584)
Q Consensus       575 p~  576 (584)
                      |.
T Consensus       166 p~  167 (192)
T d1w8aa_         166 PS  167 (192)
T ss_dssp             ST
T ss_pred             Ch
Confidence            43

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6e-15  Score=137.77  Aligned_cols=184  Identities=15%  Similarity=0.083  Sum_probs=101.6

Q ss_pred             CCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCcccccchhhhcCCCCCCEE
Q psy11648        138 LSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDLNGNLFRHLYNLQEL  217 (584)
Q Consensus       138 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  217 (584)
                      ..+|++|+++++.+.....                        ..+...+++|++|+++++.+++.....+.++++|++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l------------------------~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  100 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTL------------------------HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  100 (284)
T ss_dssp             CBCCCEEECTTCEECHHHH------------------------HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             CCCCCEEECCCCccCHHHH------------------------HHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCc
Confidence            3578888888876655311                        1222367888888888888776666677788888888


Q ss_pred             EcCCCc-cceeecCCccccccccceEEeecccc-cCCCCchhhHhhhcCCCCCEEEccCcc--cccc-ccccccCCCCCc
Q psy11648        218 SLSFNK-LQIIELNSNVFDVFEKLQLLEISFSL-FNSNEFPYYILNKNLNTLEWLAMDNNN--IKNI-RNYSLYNLTSLN  292 (584)
Q Consensus       218 ~l~~~~-l~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~l~~~~~~~~~~~L~~L~l~~~~--l~~~-~~~~l~~l~~L~  292 (584)
                      +++++. +++.. ....+..+++|++|++++|. +.+..+...+. ..+++|+.|+++++.  ++.. ......++++|+
T Consensus       101 ~Ls~c~~itd~~-l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~  178 (284)
T d2astb2         101 NLSGCSGFSEFA-LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  178 (284)
T ss_dssp             ECTTCBSCCHHH-HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             cccccccccccc-cchhhHHHHhccccccccccccccccchhhhc-ccccccchhhhccccccccccccccccccccccc
Confidence            888853 33210 12224556778888887764 22112222222 345677777777642  3321 111234566777


Q ss_pred             EEEcccCC-CcccccccccccccCCccEEEcCCC-cccccccccccCCCCCcEEEccCC
Q psy11648        293 YINLEYNK-ISKIHNNLFHFNIHKRLKEIRLSNN-YLELIESDTFYNLKELNTITLSYN  349 (584)
Q Consensus       293 ~L~l~~~~-l~~i~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~  349 (584)
                      +|++++|. ++......+..  +++|++|++++| .++......+..+++|++|+++++
T Consensus       179 ~L~L~~~~~itd~~~~~l~~--~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         179 HLDLSDSVMLKNDCFQEFFQ--LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGG--CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccCCCchhhhhhcc--cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77776653 33221111222  555666666554 344333333445555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.9e-15  Score=137.31  Aligned_cols=182  Identities=20%  Similarity=0.116  Sum_probs=87.0

Q ss_pred             cceeeEEEecCcccc-cccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceeecc
Q psy11648         69 ACYDLTLKITNTQIE-ELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLR  147 (584)
Q Consensus        69 ~~L~~~L~ls~n~i~-~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~  147 (584)
                      ..|+ +||++++.+. .....++..+++|+  +|++++|.+.+....                   .+.++++|++|+++
T Consensus        46 ~~L~-~LdLs~~~i~~~~l~~l~~~c~~L~--~L~L~~~~l~~~~~~-------------------~l~~~~~L~~L~Ls  103 (284)
T d2astb2          46 FRVQ-HMDLSNSVIEVSTLHGILSQCSKLQ--NLSLEGLRLSDPIVN-------------------TLAKNSNLVRLNLS  103 (284)
T ss_dssp             BCCC-EEECTTCEECHHHHHHHHTTBCCCS--EEECTTCBCCHHHHH-------------------HHTTCTTCSEEECT
T ss_pred             CCCC-EEECCCCccCHHHHHHHHHhCCCcc--cccccccCCCcHHHH-------------------HHhcCCCCcCcccc
Confidence            3566 7777766655 22334555555677  777777665443222                   23344667777776


Q ss_pred             cc-ccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCc-ccc-cchhhh-cCCCCCCEEEcCCCc
Q psy11648        148 CN-KITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNK-ITD-LNGNLF-RHLYNLQELSLSFNK  223 (584)
Q Consensus       148 ~n-~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~-~~~~~L~~L~l~~~~  223 (584)
                      +| .+++.+.                        ..+...+++|++|++++|. +++ .....+ ..+++|+.|+++++.
T Consensus       104 ~c~~itd~~l------------------------~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2         104 GCSGFSEFAL------------------------QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBSCCHHHH------------------------HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             cccccccccc------------------------chhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            65 3333211                        1122356666666666653 322 111122 234566666666542


Q ss_pred             --cceeecCCccccccccceEEeecccccCCCCchhhHhhhcCCCCCEEEccCc-cccccccccccCCCCCcEEEcccC
Q psy11648        224 --LQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPYYILNKNLNTLEWLAMDNN-NIKNIRNYSLYNLTSLNYINLEYN  299 (584)
Q Consensus       224 --l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~  299 (584)
                        +++. .....+..+++|++|++++|....+.....+  ..+++|++|++++| .++......+.++++|++|+++++
T Consensus       160 ~~i~~~-~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l--~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKS-DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHH-HHHHHHHHCTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccc-cccccccccccccccccccccCCCchhhhhh--cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              1111 0112233445555555555432112222222  35555666666554 344333334455555666665554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.2e-15  Score=123.99  Aligned_cols=126  Identities=23%  Similarity=0.283  Sum_probs=105.4

Q ss_pred             ccCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccE
Q psy11648        437 APIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQI  516 (584)
Q Consensus       437 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  516 (584)
                      .+..+++|++++|+++.++ ..+..+ ++|+.|++++|++..+.  .+..+++|++|++++|.++...+..+..+++|++
T Consensus        16 n~~~lr~L~L~~n~I~~i~-~~~~~l-~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIE-NLGATL-DQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGT-TCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCcCcEEECCCCCCCccC-cccccc-ccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            3567899999999999886 556666 89999999999998763  4788999999999999998877666778999999


Q ss_pred             EECCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCc----cccCCCCcceEEC
Q psy11648        517 IDLSFNEISMLTG-EQFYFSFKLRILNISHNRLRSLPR----DVFSNTIIEKLDI  566 (584)
Q Consensus       517 L~ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~lp~----~l~~~~~L~~l~l  566 (584)
                      |++++|++..+.. ..+..+++|++|++++|.++..|.    .+..+|+|+.||-
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            9999999987654 557789999999999999988774    3666799998874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=2e-15  Score=145.86  Aligned_cols=268  Identities=14%  Similarity=0.118  Sum_probs=178.7

Q ss_pred             cCCCccceeccccccccchhhhcccccccccccccccc---------c-ccceeeeecCCceeecC----------Cccc
Q psy11648          5 LSHNKLSVLNMATLYSNVTKLQHLGTTILKGDQLQGIF---------N-SKLRELEITGKDLKFID----------PSAF   64 (584)
Q Consensus         5 ls~~~~~~~~~~~~~~~l~~l~~Lr~L~l~~~~l~~l~---------~-~~L~~L~ls~n~~~~~~----------~~~~   64 (584)
                      |..+.++.....++...+.....|+.|++++|.+.+-.         . ++|+.++++++......          .+.+
T Consensus        10 L~l~~~~~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l   89 (344)
T d2ca6a1          10 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL   89 (344)
T ss_dssp             CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHH
Confidence            33456776667777777888899999999999886521         1 89999999877543321          1223


Q ss_pred             cccccceeeEEEecCccccc-----ccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCC
Q psy11648         65 DNIDACYDLTLKITNTQIEE-----LPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLS  139 (584)
Q Consensus        65 ~~~~~~L~~~L~ls~n~i~~-----l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~  139 (584)
                      ... ++|+ +|++++|.++.     +...+.. .+.|+  +|++++|.+.......++......      .........+
T Consensus        90 ~~~-~~L~-~L~L~~n~i~~~~~~~l~~~l~~-~~~L~--~L~l~~n~l~~~~~~~l~~~l~~~------~~~~~~~~~~  158 (344)
T d2ca6a1          90 LKC-PKLH-TVRLSDNAFGPTAQEPLIDFLSK-HTPLE--HLYLHNNGLGPQAGAKIARALQEL------AVNKKAKNAP  158 (344)
T ss_dssp             TTC-TTCC-EEECCSCCCCTTTHHHHHHHHHH-CTTCC--EEECCSSCCHHHHHHHHHHHHHHH------HHHHHHHTCC
T ss_pred             hhC-CCcc-cccccccccccccccchhhhhcc-cccch--heeccccccccccccccccccccc------ccccccccCc
Confidence            333 7899 99999998773     3333333 44599  999999988654444443321100      0111234567


Q ss_pred             ccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCccccc-----chhhhcCCCCC
Q psy11648        140 NLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDL-----NGNLFRHLYNL  214 (584)
Q Consensus       140 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L  214 (584)
                      .|+.+++++|.+.......+..                    .+. .++.|+.|++++|.+...     ....+..+++|
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~--------------------~l~-~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L  217 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAK--------------------TFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  217 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHH--------------------HHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             ccceeecccccccccccccccc--------------------hhh-hhhhhcccccccccccccccccchhhhhcchhhh
Confidence            8999999999877654433322                    222 678999999999988742     33457788999


Q ss_pred             CEEEcCCCcccee--ecCCccccccccceEEeecccccCCCC---chhhHhhhcCCCCCEEEccCccccccc----cccc
Q psy11648        215 QELSLSFNKLQII--ELNSNVFDVFEKLQLLEISFSLFNSNE---FPYYILNKNLNTLEWLAMDNNNIKNIR----NYSL  285 (584)
Q Consensus       215 ~~L~l~~~~l~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~~~L~~L~l~~~~l~~~~----~~~l  285 (584)
                      ++|++++|.++..  ......+..+++|++|++++|.+.+..   +...+-....+.|++|++++|.++...    ...+
T Consensus       218 ~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l  297 (344)
T d2ca6a1         218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  297 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHH
Confidence            9999999987542  113355778899999999999886211   222221013467999999999987422    2233


Q ss_pred             c-CCCCCcEEEcccCCCccc
Q psy11648        286 Y-NLTSLNYINLEYNKISKI  304 (584)
Q Consensus       286 ~-~l~~L~~L~l~~~~l~~i  304 (584)
                      . +++.|++|++++|.+...
T Consensus       298 ~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         298 DEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHCTTCCEEECTTSBSCTT
T ss_pred             HccCCCCCEEECCCCcCCCc
Confidence            2 578899999999988643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=4.5e-14  Score=113.00  Aligned_cols=103  Identities=23%  Similarity=0.323  Sum_probs=60.7

Q ss_pred             cEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCC
Q psy11648        442 KSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSF  521 (584)
Q Consensus       442 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~  521 (584)
                      +.|++++|.++.++  .+..+ ++|++|++++|++..+++ .+..+++|++|++++|.++..  +.+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l-~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQL-LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGG-TTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCCc--ccccC-CCCCEEECCCCccCcchh-hhhhhhccccccccccccccc--CccccccccCeEECCC
Confidence            35666666666554  24555 666666666666665533 455566666666666666544  2356666666666666


Q ss_pred             CCCCCcCc-ccccCCCCccEEEcCCCcCCc
Q psy11648        522 NEISMLTG-EQFYFSFKLRILNISHNRLRS  550 (584)
Q Consensus       522 n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~  550 (584)
                      |++.+++. ..+..+++|+.|++++|+++.
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            66665442 345556666666666666553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=3.5e-15  Score=144.14  Aligned_cols=201  Identities=14%  Similarity=0.176  Sum_probs=121.4

Q ss_pred             ccceeeeecCCceeecCCc----cccccccceeeEEEecCcccccc-----------cccccccccccceeeeecCCCce
Q psy11648         44 SKLRELEITGKDLKFIDPS----AFDNIDACYDLTLKITNTQIEEL-----------PSGLFDKIENIEQMTLDLSHNKL  108 (584)
Q Consensus        44 ~~L~~L~ls~n~~~~~~~~----~~~~~~~~L~~~L~ls~n~i~~l-----------~~~~~~~~~~L~~~~L~ls~~~l  108 (584)
                      ..++.|++++|.+.+....    .+... ++|+ .++++++.....           ...+ ..++.|+  +|++++|.+
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~-~l~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~L~--~L~L~~n~i  105 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASK-KDLE-IAEFSDIFTGRVKDEIPEALRLLLQAL-LKCPKLH--TVRLSDNAF  105 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTC-TTCC-EEECCSCCTTSCGGGSHHHHHHHHHHH-TTCTTCC--EEECCSCCC
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhC-CCCC-EEECCCCcccccccccchHHHHHHHHH-hhCCCcc--ccccccccc
Confidence            8899999999998775433    34444 7899 999998765422           1222 2344599  999999988


Q ss_pred             eeechhhhccchhcccccCceeccchhhcCCccceeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhcc
Q psy11648        109 SVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLS  188 (584)
Q Consensus       109 ~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  188 (584)
                      .......+..               .+..+++|++|++++|.+.......++..   +..+.         ........+
T Consensus       106 ~~~~~~~l~~---------------~l~~~~~L~~L~l~~n~l~~~~~~~l~~~---l~~~~---------~~~~~~~~~  158 (344)
T d2ca6a1         106 GPTAQEPLID---------------FLSKHTPLEHLYLHNNGLGPQAGAKIARA---LQELA---------VNKKAKNAP  158 (344)
T ss_dssp             CTTTHHHHHH---------------HHHHCTTCCEEECCSSCCHHHHHHHHHHH---HHHHH---------HHHHHHTCC
T ss_pred             ccccccchhh---------------hhcccccchheeccccccccccccccccc---ccccc---------cccccccCc
Confidence            7655544433               35667899999999998766543333222   22111         111122467


Q ss_pred             CCcEEEcCCCccccc----chhhhcCCCCCCEEEcCCCccceee---cCCccccccccceEEeecccccCCC---Cchhh
Q psy11648        189 NLETLLLRCNKITDL----NGNLFRHLYNLQELSLSFNKLQIIE---LNSNVFDVFEKLQLLEISFSLFNSN---EFPYY  258 (584)
Q Consensus       189 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~---~l~~~  258 (584)
                      .|+.+.++++.+...    ....+..++.|+++++++|.+....   .....+..+++|+.|++++|.+.+.   .+...
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             ccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence            888899888877642    2334567788888888888765320   0122344455666666666554310   11112


Q ss_pred             HhhhcCCCCCEEEccCcccc
Q psy11648        259 ILNKNLNTLEWLAMDNNNIK  278 (584)
Q Consensus       259 ~~~~~~~~L~~L~l~~~~l~  278 (584)
                      +  ..+++|++|++++|.++
T Consensus       239 l--~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         239 L--KSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             G--GGCTTCCEEECTTCCCC
T ss_pred             c--cccccchhhhhhcCccC
Confidence            1  34555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.5e-14  Score=119.67  Aligned_cols=110  Identities=19%  Similarity=0.101  Sum_probs=98.2

Q ss_pred             CCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEc
Q psy11648        464 DSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNI  543 (584)
Q Consensus       464 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L  543 (584)
                      ..+++|++++|++..++ ..+..+++|+.|++++|.+...  +.|..+++|++|++++|+++.+++..+..+++|++|++
T Consensus        18 ~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            68999999999999885 4567789999999999999866  45899999999999999999998887888999999999


Q ss_pred             CCCcCCccCc--cccCCCCcceEECCCCCCCCCCC
Q psy11648        544 SHNRLRSLPR--DVFSNTIIEKLDISYNQDKIRPG  576 (584)
Q Consensus       544 ~~n~l~~lp~--~l~~~~~L~~l~l~~n~l~~~p~  576 (584)
                      ++|+++.++.  .+..+++|+.+++++|+++..|.
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             ccccccccccccccccccccchhhcCCCccccccc
Confidence            9999998764  56778999999999999998774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.5e-13  Score=109.85  Aligned_cols=104  Identities=19%  Similarity=0.208  Sum_probs=73.6

Q ss_pred             cEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCC
Q psy11648        467 RKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHN  546 (584)
Q Consensus       467 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n  546 (584)
                      +.|++++|+++..+  .++.++.|++|++++|.+... |..+..+++|+.|++++|++++++  .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcc-hhhhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            46777777777553  366777777888877777643 445777777888888887777764  3667777888888887


Q ss_pred             cCCccCc--cccCCCCcceEECCCCCCCCCC
Q psy11648        547 RLRSLPR--DVFSNTIIEKLDISYNQDKIRP  575 (584)
Q Consensus       547 ~l~~lp~--~l~~~~~L~~l~l~~n~l~~~p  575 (584)
                      +++.+|.  .+..+++|+.|++++|+++.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            7776653  4566677788888887776443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2e-12  Score=107.88  Aligned_cols=109  Identities=23%  Similarity=0.319  Sum_probs=68.4

Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCC-cccccCccccCCCcccCeeeccCcccccccccccCCCCCccE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFN-EIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQI  516 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  516 (584)
                      +...+.++.+++.+.++| ..+..+ ++|++|+++++ .+..+.+..|.++++|+.|++++|.+..+.+..|..+++|++
T Consensus         7 c~~~~~l~c~~~~~~~~p-~~l~~l-~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSL-HHLPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSCCCTTT-TTSCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCCCccCc-ccccCc-cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            344455666666666555 234444 66677777554 366666666666667777777777666666666666667777


Q ss_pred             EECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        517 IDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       517 L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      |+|++|+++.+++..|... +|++|+|++|.+.
T Consensus        85 L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            7777766666666655443 5666666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.1e-12  Score=104.54  Aligned_cols=108  Identities=19%  Similarity=0.210  Sum_probs=83.9

Q ss_pred             CCCcEEEccCCcccccCccccCCCcccCeeeccCc-ccccccccccCCCCCccEEECCCCCCCCcCcccccCCCCccEEE
Q psy11648        464 DSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHN-NIAVVVKRTFIGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILN  542 (584)
Q Consensus       464 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~  542 (584)
                      ...+.++.+++.+...+ ..+..+++|++|++++| .++.+.+..|.++++|+.|++++|+|+.+.+.+|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~~~p-~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCCTTT-TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCccCc-ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34556777777666553 34667788888888765 47777777788888888888888888888888888888888888


Q ss_pred             cCCCcCCccCccccCCCCcceEECCCCCCC
Q psy11648        543 ISHNRLRSLPRDVFSNTIIEKLDISYNQDK  572 (584)
Q Consensus       543 L~~n~l~~lp~~l~~~~~L~~l~l~~n~l~  572 (584)
                      |++|+|+.+|...+...+|+.|+|++|++.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCccc
Confidence            888888888888887778888888888874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=5.5e-13  Score=116.46  Aligned_cols=122  Identities=29%  Similarity=0.267  Sum_probs=72.4

Q ss_pred             cCcccEEEccCCCCCCCChhhHHHhhCCCcEEEccCCcccccCccccCCCcccCeeeccCcccccccccccCCCCCccEE
Q psy11648        438 PIYIKSLDLSNNRIQEVPVNFLQTFADSLRKLYLDFNEIKHLDATAFGNLDVLELLSLEHNNIAVVVKRTFIGMPNLQII  517 (584)
Q Consensus       438 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  517 (584)
                      +++|++|++++|.++.++  .+..+ ++|++|++++|++..++. .+..+++|++|++++|.++..  ..+..+++|+.|
T Consensus        47 L~~L~~L~Ls~n~I~~i~--~l~~l-~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIEKIS--SLSGM-ENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASL--SGIEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEESCCC--CHHHH-TTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEE
T ss_pred             ccccceeECcccCCCCcc--cccCC-ccccChhhcccccccccc-ccccccccccccccccccccc--cccccccccccc
Confidence            456666666666666654  25555 666666666666655432 223345666677766666644  235566667777


Q ss_pred             ECCCCCCCCcCc-ccccCCCCccEEEcCCCcCCccCcc-----------ccCCCCcceEE
Q psy11648        518 DLSFNEISMLTG-EQFYFSFKLRILNISHNRLRSLPRD-----------VFSNTIIEKLD  565 (584)
Q Consensus       518 ~ls~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~lp~~-----------l~~~~~L~~l~  565 (584)
                      ++++|+++.+.. ..+..+++|++|++++|.++..+..           +..+|+|+.||
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            777776665533 3456667777777777766533221           34456777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.10  E-value=5.5e-12  Score=109.96  Aligned_cols=85  Identities=25%  Similarity=0.273  Sum_probs=37.4

Q ss_pred             hccCCcEEEcCCCcccccchhhhcCCCCCCEEEcCCCccceeecCCccccccccceEEeecccccCCCCchh-hHhhhcC
Q psy11648        186 LLSNLETLLLRCNKITDLNGNLFRHLYNLQELSLSFNKLQIIELNSNVFDVFEKLQLLEISFSLFNSNEFPY-YILNKNL  264 (584)
Q Consensus       186 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~  264 (584)
                      .+++|+.|++++|.++.+.. .+..+++|++|++++|.+..+    ..+..+++|+.|++++|.+.  .++. ..+ ..+
T Consensus        68 ~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l----~~~~~l~~L~~L~L~~N~i~--~~~~~~~l-~~l  139 (198)
T d1m9la_          68 GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASL----SGIEKLVNLRVLYMSNNKIT--NWGEIDKL-AAL  139 (198)
T ss_dssp             HHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCH----HHHHHHHHSSEEEESEEECC--CHHHHHHH-TTT
T ss_pred             CCccccChhhcccccccccc-ccccccccccccccccccccc----ccccccccccccccccchhc--cccccccc-cCC
Confidence            44555555555555443321 222233455555555544432    22444445555555555442  2322 112 444


Q ss_pred             CCCCEEEccCcccc
Q psy11648        265 NTLEWLAMDNNNIK  278 (584)
Q Consensus       265 ~~L~~L~l~~~~l~  278 (584)
                      ++|++|++++|.+.
T Consensus       140 ~~L~~L~L~~N~l~  153 (198)
T d1m9la_         140 DKLEDLLLAGNPLY  153 (198)
T ss_dssp             TTCSEEEECSSHHH
T ss_pred             CccceeecCCCccc
Confidence            55555555554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.5e-07  Score=78.27  Aligned_cols=107  Identities=14%  Similarity=0.007  Sum_probs=69.8

Q ss_pred             hhhhccccccccccccccccc-----ccceeeeecCCceeecCC--ccccccccceeeEEEecCcccccccccccccccc
Q psy11648         23 TKLQHLGTTILKGDQLQGIFN-----SKLRELEITGKDLKFIDP--SAFDNIDACYDLTLKITNTQIEELPSGLFDKIEN   95 (584)
Q Consensus        23 ~~l~~Lr~L~l~~~~l~~l~~-----~~L~~L~ls~n~~~~~~~--~~~~~~~~~L~~~L~ls~n~i~~l~~~~~~~~~~   95 (584)
                      ..+..++.++...+....++.     ++|++|++++|+++++.+  ..+..+ ++|+ .|++++|+|..++.-.+....+
T Consensus        39 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l-~~L~-~L~Ls~N~i~~l~~l~~l~~~~  116 (162)
T d1koha1          39 VAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLK-ILNLSGNELKSERELDKIKGLK  116 (162)
T ss_dssp             TTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHS-TTCC-CCCCTTSCCCCGGGHHHHTTCC
T ss_pred             hhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhC-Cccc-ccccccCccccchhhhhhhccc
Confidence            334444445555444333332     899999999999988753  345555 8899 9999999999887744433344


Q ss_pred             cceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccceee
Q psy11648         96 IEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLETLL  145 (584)
Q Consensus        96 L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~~L~  145 (584)
                      |+  .|++++|.+.........            .....+..+++|+.||
T Consensus       117 L~--~L~L~~Npl~~~~~~~~~------------y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         117 LE--ELWLDGNSLSDTFRDQST------------YISAIRERFPKLLRLD  152 (162)
T ss_dssp             CS--SCCCTTSTTSSSSSSHHH------------HHHHHHTTSTTCCEET
T ss_pred             cc--eeecCCCCcCcCcccchh------------HHHHHHHHCCCCCEEC
Confidence            89  999999988754322111            0112346678898887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.09  E-value=9.6e-07  Score=73.67  Aligned_cols=35  Identities=14%  Similarity=-0.021  Sum_probs=14.7

Q ss_pred             cCCcEEEcCCCccccc----chhhhcCCCCCCEEEcCCC
Q psy11648        188 SNLETLLLRCNKITDL----NGNLFRHLYNLQELSLSFN  222 (584)
Q Consensus       188 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~  222 (584)
                      +.|++|++++|.+...    ...++...+.|++|+++++
T Consensus        72 ~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            4444444444444321    1223334444555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=8.1e-07  Score=73.70  Aligned_cols=41  Identities=32%  Similarity=0.295  Sum_probs=17.4

Q ss_pred             CCCCCccEEECCCCCCCCcCcccccCCCCccEEEcCCCcCC
Q psy11648        509 IGMPNLQIIDLSFNEISMLTGEQFYFSFKLRILNISHNRLR  549 (584)
Q Consensus       509 ~~~~~L~~L~ls~n~i~~~~~~~~~~~~~L~~L~L~~n~l~  549 (584)
                      ..+++|+.|++++|+|+.+.+-.+.....|++|++++|.++
T Consensus        88 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          88 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            33444444444444444433322222334444444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.93  E-value=2.9e-06  Score=70.68  Aligned_cols=114  Identities=14%  Similarity=0.094  Sum_probs=61.1

Q ss_pred             cceeeEEEecCc-ccc-----cccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccc
Q psy11648         69 ACYDLTLKITNT-QIE-----ELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLE  142 (584)
Q Consensus        69 ~~L~~~L~ls~n-~i~-----~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~  142 (584)
                      +.|+ +|+|+++ .++     .+...+..... |+  +|++++|.+.......++..               +...+.|+
T Consensus        15 ~~L~-~L~L~~~~~i~~~~~~~l~~~L~~n~~-L~--~L~Ls~n~l~~~~~~~la~~---------------L~~n~~L~   75 (167)
T d1pgva_          15 TDLK-EVNINNMKRVSKERIRSLIEAACNSKH-IE--KFSLANTAISDSEARGLIEL---------------IETSPSLR   75 (167)
T ss_dssp             SSCC-EEECTTCCSSCHHHHHHHHHHHTTCSC-CC--EEECTTSCCBHHHHTTHHHH---------------HHHCSSCC
T ss_pred             CCCc-EEEeCCCCCCCHHHHHHHHHHHhhCCc-cc--eeeccccccchhHHHHHhhh---------------hhhccccc
Confidence            5677 7777763 344     22233333333 77  77777776655444433322               44556677


Q ss_pred             eeeccccccccccccccchhhHHHHHhhcCCCCCCcccchhHhhccCCcEEEcCCCccccc-------chhhhcCCCCCC
Q psy11648        143 TLLLRCNKITDLNGNLFRHLQKSIVKAKKNNNNNEDQVSDREKLLSNLETLLLRCNKITDL-------NGNLFRHLYNLQ  215 (584)
Q Consensus       143 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~  215 (584)
                      +|++++|.+.+.+...++.                    .+. ..+.|++|+++++.+..+       ....+...+.|+
T Consensus        76 ~L~L~~n~i~~~g~~~l~~--------------------aL~-~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~  134 (167)
T d1pgva_          76 VLNVESNFLTPELLARLLR--------------------STL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLL  134 (167)
T ss_dssp             EEECCSSBCCHHHHHHHHH--------------------HTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCC
T ss_pred             ceeeehhhcchHHHHHHHH--------------------HHH-hCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCcc
Confidence            7777777666654332221                    111 346677777776644322       233445566666


Q ss_pred             EEEcCCC
Q psy11648        216 ELSLSFN  222 (584)
Q Consensus       216 ~L~l~~~  222 (584)
                      +++++.+
T Consensus       135 ~l~l~~~  141 (167)
T d1pgva_         135 RVGISFA  141 (167)
T ss_dssp             EEECCCC
T ss_pred             EeeCcCC
Confidence            6666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.54  E-value=1.9e-05  Score=65.49  Aligned_cols=17  Identities=6%  Similarity=0.085  Sum_probs=7.5

Q ss_pred             cCCccceeecccccccc
Q psy11648        137 LLSNLETLLLRCNKITD  153 (584)
Q Consensus       137 ~~~~L~~L~l~~n~i~~  153 (584)
                      .+++|++|++++|.+++
T Consensus        44 ~n~~L~~L~Ls~n~l~~   60 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSND   60 (166)
T ss_dssp             TCCSCCEEECTTSCCCH
T ss_pred             cCCccCeeeccCCcccH
Confidence            33444444444444433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.47  E-value=1.6e-05  Score=66.03  Aligned_cols=67  Identities=13%  Similarity=0.124  Sum_probs=34.0

Q ss_pred             cceeeEEEecC-cccc-----cccccccccccccceeeeecCCCceeeechhhhccchhcccccCceeccchhhcCCccc
Q psy11648         69 ACYDLTLKITN-TQIE-----ELPSGLFDKIENIEQMTLDLSHNKLSVLNMATLYSNVTKLQHLGTTILKDREKLLSNLE  142 (584)
Q Consensus        69 ~~L~~~L~ls~-n~i~-----~l~~~~~~~~~~L~~~~L~ls~~~l~~~~~~~~~~~~~l~~~n~l~~l~~~l~~~~~L~  142 (584)
                      +.|+ +|++++ +.++     .+...+..+.+ |+  +|++++|.++......++..               +...++++
T Consensus        17 ~~L~-~L~L~~~~~i~~~~~~~l~~al~~n~~-L~--~L~Ls~n~l~~~~~~~L~~~---------------l~~~~~l~   77 (166)
T d1io0a_          17 PDLE-EVNLNNIMNIPVPTLKACAEALKTNTY-VK--KFSIVGTRSNDPVAFALAEM---------------LKVNNTLK   77 (166)
T ss_dssp             TTCC-EEECTTCTTCCHHHHHHHHHHHTTCCS-CC--EEECTTSCCCHHHHHHHHHH---------------HHHCSSCC
T ss_pred             CCCc-EEEcCCCCCCCHHHHHHHHHHHhcCCc-cC--eeeccCCcccHHHHHHHHHH---------------Hhhcccch
Confidence            5566 666665 3343     12222223333 66  66666666555444433322               34455666


Q ss_pred             eeeccccccccc
Q psy11648        143 TLLLRCNKITDL  154 (584)
Q Consensus       143 ~L~l~~n~i~~~  154 (584)
                      .+++++|.+...
T Consensus        78 ~l~l~~~~~~~~   89 (166)
T d1io0a_          78 SLNVESNFISGS   89 (166)
T ss_dssp             EEECCSSCCCHH
T ss_pred             hhhhccccccch
Confidence            666666655544