Psyllid ID: psy11701

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-----
Protein Sequence
MVWQSRSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGGTKN
Secondary Structure (PSIPRED)
cEEEEEccccccccEEEEEEEEcEEEEEcccccccEEEccccEEEEccccEEEEEEcccccccEEEEEEccccccccccEEEEEcccEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEEccccccccccEEEcccccEEEEEEEEcccccEEEEEEccEEcccccccccEEEccccEEEccccccccEEEEEEEEEccEEEEEEEEEEEEEEccEEEEccccEEEEcccEEEEEEEEccccccEEEEEEccEEcccccEEEcccccEEEccccccccEEEEEEEEcccccEEEEEEEEEccccccccccccEEEcccccEEEEEEEEEcccccEEEEEEEccEEccccccccEEEccccEEEEccccccccEEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEcccEEEEEEEEcccccccccccEEEEEEEEcccccccEEEEEEEccccEEEEEccccccccEEEEEEEEcccccccccccEEEcccccccccccEEEEEEccccEEEEEEEccccccccccEEEEEEEEcccccccccEEEEEEEccccccEEEEcccccccEEEEEEEEEEccccccccccEEEcccccccccEEEEEcccEEEEEEEccccccccccEEEEEEEEEEcccccccccEEEEcccccEEEEcccccccEEEEEEEEEcccccccccccEEEEEcccccccccccccccccEEEEEEEEcccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccccEEEEcEEEEEcccccccccccEEEEccccEEEEcccEEEEEEEcccccccEEEEEEcccEccccccEEEEccccEEEEEccccccccEEEEEEEcccccEEEccEEEEEEcccccccccccEEEEcccEEEEEEEcccccccEEEEEEcccEccccccccEEEEcccEEEEEccccccccEEEEEEEEccccEEEEEEEEEEccccccccccccEEEEcccEEEEEEEcccccccEEEEEEcccccccccEEEEcccEEEEEEccccccEEEEEEEEEccccccccEEEEEEcccccccccccEEEEcccEEEEEEEcccccccccEEEEEEcccEccccccccEEEccccEEEEEEccccccEEEEEEEEEccccccccEEEEEccccccccccccEEEEcccEEEEEEEccccccccccEEEEEEEEEccccccccEEEEEEEcccccEEEEEcccccccEEEEEEEEEccccccccccEEEEcccccccccccEEEEEccccEEEEEEcccccccccEEEEEEEEEEcccccccccEEEEEEEEccccEEEEEEccccccEEEEEEEEEEcccccccccccEccccccccccEEEccccccEEEEcccccHHHccccccEEEEEEEEcccccccEEEEEccccccEEEEcccccccEEEEEEEEEEccEEcccccccEEEEccccccccccccEccccccEEEEEEEEcccccccccEEEEcccccccc
Coil and Loop (DISEMBL)
mvwqsrseykiGNRILLNVIATGisasqnrhapkqqyvTRKKEVALRNKKVELFcifggtplpqtiwskdgvpinpsdrisqgnygkSLIIKHvefsdqgsytcevsngvgeakSYSIdlsvlaapyftvepefinaaeeetvtfeckasglpepeihwvhngkpisqappnprrkvgpnritienlrksdtgnygcnatnslgyvyKDVYVNVLahapeiteapkdeytvdgkTVVLTCRvfgapkpevnwihnqkeltggrytiletgdlkitdvafadsgeytcfarnklgtaqgsgsltvkehthitdqpedyeveagqsatfrcnavsdpslKLSIVWLrgsepidfeseprfvqsndysltvtksseldsgqytcRAQTELDFIEAQATLTvqvpleapsnftLIQVIDAKKAvvswnpvspqslrghfrgykvqtwtekdgegSIRELIVNkgestttevdkfvpasKNFARVLAFngayngppseiisfvtpegvpgtvqsleaiplgssafylkwvkpeqpngvlmgYKIKyqsvkgtkvgpllerlpyisdptttsaklaglepstkYRIHLAgytkagdgaeskylfyvpfknpdnvegrgstpnnlVISWtampeiehnaphfkyrifwrrhntgeawnqddVLDWRQSElvlanqptfqpyeIKVVQTWTEKDGEGSIRELIVNkgestttevdkfvpasKNFARVLAFngayngppseiisfvtpeggtkn
Flexible Loop (DISEMBL)
mvwqsrseykigNRILLNVIATgisasqnrhapkqqyvtrkkevALRNKKVELFCIFggtplpqtiwskDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWvhngkpisqappnprrkvgpnRITIenlrksdtgnygCNATNSLGYVYKDVYVNVLAHApeiteapkdeytvdGKTVVLTCRVfgapkpevnwihnqkeltggryTILETGDLKITDVAFADSGEYTCFARNKLgtaqgsgsltvkEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPidfeseprfvqsndYSLTVtksseldsgQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWnpvspqslrghfrgykvqtwtekdgegsiRELIVnkgestttevdkfvpASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLErlpyisdptttsaklaglepstKYRIHLAGYTKAGDGAESKYLFYVPFKnpdnvegrgsTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVlanqptfqpyeIKVVQTWTEKDGEGSIRELIvnkgestttevdkfvpASKNFARVLAFNgayngppseiisfvtpeggtkn
Low Complexity Region (SEG)
MVWQSRSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGGTKN
Disordered region (IsUnstruct)
********YKIGNRILLNVIATGISA**********YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH*****************************DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTA****************************ATFRCNAVSDPSLKLSIVWLRGSEPIDF***********YSLT*********GQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVE****TPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF*********
Disordered Region (DISOPRED)
MVWQSRSEYKIGNRILLNVIATGIS*********************RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP***RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT*GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN*****VIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAY********************************FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGA*******************GSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTG*********DWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGS******************FVPASKNFARVLAFNGAYNGPPSEIISF**PE*****
Disordered Region (DISEMBL)
********YKIGNRILLNVIATGISAS************RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFV********
Disordered Region (DISPRO)
MVWQSRSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVWQSRSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGGTKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	745	2.2.26 [Sep-21-2011]
P20241	1302	Neuroglian OS=Drosophila	yes	N/A	0.642	0.367	0.542	1e-147
P97685	1240	Neurofascin OS=Rattus nor	no	N/A	0.487	0.292	0.359	1e-58
O94856	1347	Neurofascin OS=Homo sapie	no	N/A	0.487	0.269	0.359	1e-58
Q92823	1304	Neuronal cell adhesion mo	no	N/A	0.500	0.286	0.355	2e-58
Q810U3	1240	Neurofascin OS=Mus muscul	no	N/A	0.488	0.293	0.360	6e-58
O42414	1369	Neurofascin OS=Gallus gal	no	N/A	0.485	0.264	0.354	1e-56
Q3UH53	2193	Protein sidekick-1 OS=Mus	no	N/A	0.783	0.266	0.307	2e-56
Q810U4	1256	Neuronal cell adhesion mo	no	N/A	0.653	0.387	0.313	3e-56
Q7Z5N4	2213	Protein sidekick-1 OS=Hom	no	N/A	0.779	0.262	0.302	6e-56
Q8AV57	2177	Protein sidekick-2 OS=Gal	no	N/A	0.766	0.262	0.295	1e-55

>sp|P20241|NRG_DROME Neuroglian OS=Drosophila melanogaster GN=Nrg PE=1 SV=2

 Score =  523 bits (1346), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/490 (54%), Positives = 338/490 (68%), Gaps = 11/490 (2%)

Query: 6   RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
           RSEYKIGN++LL+V   G+SASQN+H P +QYV+R++ +ALR K++ELFCI+GGTPLPQT
Sbjct: 219 RSEYKIGNKVLLDVKQMGVSASQNKHPPVRQYVSRRQSLALRGKRMELFCIYGGTPLPQT 278

Query: 66  IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           +WSKDG  I  SDRI+QG+YGKSL+I+   F D G+YTC+VSNGVG A+S+SI L+V + 
Sbjct: 279 VWSKDGQRIQWSDRITQGHYGKSLVIRQTNFDDAGTYTCDVSNGVGNAQSFSIILNVNSV 338

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           PYFT EPE   AAE+E V FEC+A+G+PEP+I W+HNGKPI Q+ PNPRR V  N I I 
Sbjct: 339 PYFTKEPEIATAAEDEEVVFECRAAGVPEPKISWIHNGKPIEQSTPNPRRTVTDNTIRII 398

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
           NL K DTGNYGCNATNSLGYVYKDVY+NV A  P I+EAP    TVDG+ V + CRV G+
Sbjct: 399 NLVKGDTGNYGCNATNSLGYVYKDVYLNVQAEPPTISEAPAAVSTVDGRNVTIKCRVNGS 458

Query: 246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           PKP V W+     LTGGRY +   GDL+I DV F+D+G+YTC+A+NK G  Q  GSL VK
Sbjct: 459 PKPLVKWLRASNWLTGGRYNVQANGDLEIQDVTFSDAGKYTCYAQNKFGEIQADGSLVVK 518

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           EHT IT +P++YEV AGQSATFRCN   D +L++ I W +  + IDFE++PRFV++ND S
Sbjct: 519 EHTRITQEPQNYEVAAGQSATFRCNEAHDDTLEIEIDWWKDGQSIDFEAQPRFVKTNDNS 578

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNP 425
           LT+ K+ ELDSG+YTC A+T LD   A+A L VQ    AP   T I    A KA + W  
Sbjct: 579 LTIAKTMELDSGEYTCVARTRLDEATARANLIVQDVPNAPK-LTGI-TCQADKAEIHWEQ 636

Query: 426 VSPQSLRGHFRGYKVQ---TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA 482
                 R     Y +Q   ++T    + +  E + N   S   ++    P +    RV+A
Sbjct: 637 QGDN--RSPILHYTIQFNTSFTPASWDAAY-EKVPNTDSSFVVQMS---PWANYTFRVIA 690

Query: 483 FNGAYNGPPS 492
           FN     PPS
Sbjct: 691 FNKIGASPPS 700

The long isoform may play a role in neural and glial cell adhesion in the developing embryo. The short isoform may be a more general cell adhesion molecule involved in other tissues and imaginal disk morphogenesis. Vital for embryonic development. Essential for septate junctions. Septate junctions, which are the equivalent of vertebrates tight junctions, are characterized by regular arrays of transverse structures that span the intermembrane space and form a physical barrier to diffusion. Required for the blood-brain barrier formation.
Drosophila melanogaster (taxid: 7227)

>sp|P97685|NFASC_RAT Neurofascin OS=Rattus norvegicus GN=Nfasc PE=1 SV=2

 Score =  228 bits (582), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 192/373 (51%), Gaps = 10/373 (2%)

Query: 39  TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSD 98
           T   ++ LR   + L CI  G P P   W K G  + PSD+    N+ K+L I +V   D
Sbjct: 252 TSSSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAKFENFNKALRITNVSEED 310

Query: 99  QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIH 158
            G Y C  SN +G  + ++I + V AAPY+  EP+ +  A  E     C+A+G P+P + 
Sbjct: 311 SGEYFCLASNKMGSIR-HTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ 369

Query: 159 WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA 218
           W+ NG P+  APPNP R+V  + I   + + S    Y CN +N  GY+  + +V+VL   
Sbjct: 370 WLVNGDPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVP 429

Query: 219 PEITEAPKDEY--TVDGKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYTILETGDLKI 274
           P +  +P+++    +      L C  FG+P P + W  N +   L GG Y + E G L+I
Sbjct: 430 PRML-SPRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEI 488

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
             +   D G YTC A N LG A+    L VK+ T I   PED   + G +    C    D
Sbjct: 489 KMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAKRGTTVQLECRVKHD 548

Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
           PSLKL++ WL+  EP+   +    ++  D SLT+   +E D G YTC A TELD   A+A
Sbjct: 549 PSLKLTVSWLKDDEPLYIGNR---MKKEDDSLTIFGVAERDQGSYTCMASTELDQDLAKA 605

Query: 395 TLTVQVPLEAPSN 407
            LTV      P+N
Sbjct: 606 YLTVLADQATPTN 618

Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions. Isoform 2/isoform 3 may be responsible for mediating and signaling axon-glial interaction during the early stages of myelination.

Rattus norvegicus (taxid: 10116)

>sp|O94856|NFASC_HUMAN Neurofascin OS=Homo sapiens GN=NFASC PE=1 SV=4

 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 192/373 (51%), Gaps = 10/373 (2%)

Query: 39  TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSD 98
           T   ++ LR   + L CI  G P P   W K G  + PSD+    N+ K+L I +V   D
Sbjct: 252 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAKFENFNKALRITNVSEED 310

Query: 99  QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIH 158
            G Y C  SN +G  + ++I + V AAPY+  EP+ +  A  E     C+A+G P+P + 
Sbjct: 311 SGEYFCLASNKMGSIR-HTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ 369

Query: 159 WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA 218
           W+ NG+P+  APPNP R+V  + I   + + S    Y CN +N  GY+  + +V+VL   
Sbjct: 370 WMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVP 429

Query: 219 PEITEAPKDEY--TVDGKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYTILETGDLKI 274
           P +  +P+++    +      L C  FG+P P + W  N +   L GG Y + E G L+I
Sbjct: 430 PRML-SPRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEI 488

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
             +   D G YTC A N LG A+    L VK+ T I   PED     G +    C    D
Sbjct: 489 KMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVARRGTTVQLECRVKHD 548

Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
           PSLKL++ WL+  EP+   +    ++  D SLT+   +E D G YTC A TELD   A+A
Sbjct: 549 PSLKLTVSWLKDDEPLYIGNR---MKKEDDSLTIFGVAERDQGSYTCVASTELDQDLAKA 605

Query: 395 TLTVQVPLEAPSN 407
            LTV      P+N
Sbjct: 606 YLTVLADQATPTN 618

Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions.

Homo sapiens (taxid: 9606)

>sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule OS=Homo sapiens GN=NRCAM PE=1 SV=3

 Score =  227 bits (579), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 140/394 (35%), Positives = 199/394 (50%), Gaps = 21/394 (5%)

Query: 46  LRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
           LR   + L CI  G P P   W+K DG  + P +R    N+ K+L I HV  +D G+Y C
Sbjct: 283 LRGNVLSLECIAEGLPTPIIYWAKEDG--MLPKNRTVYKNFEKTLQIIHVSEADSGNYQC 340

Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK 164
              N +G A  ++I + V AAPY+   P+ +  +  E  T  C+A+G P+P I W+ NG 
Sbjct: 341 IAKNALG-AIHHTISVRVKAAPYWITAPQNLVLSPGEDGTLICRANGNPKPRISWLTNGV 399

Query: 165 PISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEA 224
           PI  AP +P RK+  + I   N+++  +  Y CNA+N  GY+  + +VNVLA  P I   
Sbjct: 400 PIEIAPDDPSRKIDGDTIIFSNVQERSSAVYQCNASNEYGYLLANAFVNVLAEPPRILTP 459

Query: 225 PKDEYTV-DGKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYTILETGDLKITDVAFAD 281
               Y V   +  +L C  FG+P P + W    K   L    Y + E G L+I       
Sbjct: 460 ANTLYQVIANRPALLDCAFFGSPLPTIEWFKGAKGSALHEDIYVLHENGTLEIPVAQKDS 519

Query: 282 SGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSI 341
           +G YTC ARNKLG A+    L +K+ T I  QPE   V+ G   +F C    D +L L++
Sbjct: 520 TGTYTCVARNKLGMAKNEVHLEIKDPTWIVKQPEYAVVQRGSMVSFECKVKHDHTLSLTV 579

Query: 342 VWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           +WL+ +   +  S+ RF    D+ L V   S+ DSG YTC A T LD + A A L+V  P
Sbjct: 580 LWLKDNR--ELPSDERFTVDKDH-LVVADVSDDDSGTYTCVANTTLDSVSASAVLSVVAP 636

Query: 402 LEAPS----------NFTLIQVIDAKKAVVSWNP 425
              P+          +  L   +D K   +SW P
Sbjct: 637 TPTPAPVYDVPNPPFDLELTDQLD-KSVQLSWTP 669

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Homo sapiens (taxid: 9606)

>sp|Q810U3|NFASC_MOUSE Neurofascin OS=Mus musculus GN=Nfasc PE=1 SV=1

 Score =  226 bits (575), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 189/372 (50%), Gaps = 8/372 (2%)

Query: 39  TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSD 98
           T   ++ LR   + L CI  G P P   W K G  + PS++    N+ K+L I +V   D
Sbjct: 252 TSSSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSNKAKFENFNKALRITNVSEED 310

Query: 99  QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIH 158
            G Y C  SN +G  + ++I + V AAPY+  EP+ +  A  E     C+A+G P+P + 
Sbjct: 311 SGEYFCLASNKMGSIR-HTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ 369

Query: 159 WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA 218
           W+ NG+P+  APPNP R+V  + I   + + S    Y CN +N  GY+  + +V+VL   
Sbjct: 370 WMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVP 429

Query: 219 PEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYTILETGDLKIT 275
           P +  A      V       L C  FG+P P + W  N +   L GG Y + E G L+I 
Sbjct: 430 PRMLSARNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIK 489

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP 335
            +   D G YTC A N LG A+    L VK+ T I   PED   + G +    C    DP
Sbjct: 490 MIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAKRGTTVQLECRVKHDP 549

Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQAT 395
           SLKL++ WL+  EP+   +    ++  D SLT+   +E D G YTC A TELD   A+A 
Sbjct: 550 SLKLTVSWLKDDEPLYIGNR---MKKEDDSLTIFGVAERDQGSYTCMASTELDQDLAKAY 606

Query: 396 LTVQVPLEAPSN 407
           LTV      P+N
Sbjct: 607 LTVLADQATPTN 618

Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions.

Mus musculus (taxid: 10090)

>sp|O42414|NFASC_CHICK Neurofascin OS=Gallus gallus GN=NFASC PE=1 SV=1

 Score =  222 bits (565), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 192/375 (51%), Gaps = 13/375 (3%)

Query: 37  YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEF 96
           Y T   ++ LR   + L CI  G P P  +W K G  + P+ +    N+ K+L I +V  
Sbjct: 268 YGTSSSQMVLRGVDLLLECIASGVPAPDIMWYKKGGEL-PAGKTKLENFNKALRISNVSE 326

Query: 97  SDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPE 156
            D G Y C  SN +G  + ++I + V AAPY+  EP+ +  A  E     C+A+G P+P 
Sbjct: 327 EDSGEYFCLASNKMGSIR-HTISVRVKAAPYWLDEPQNLILAPGEDGRLVCRANGNPKPS 385

Query: 157 IHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
           I W+ NG+PI  +PPNP R+V  + I   + +   +  Y CNA+N  GY+  + +V+VL 
Sbjct: 386 IQWLVNGEPIEGSPPNPSREVAGDTIVFRDTQIGSSAVYQCNASNEHGYLLANAFVSVLD 445

Query: 217 HAPEITEAPKDEY--TVDGKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYTILETGDL 272
             P I  AP+++    +      L C  FG+P P + W  N +   L GG Y   E G L
Sbjct: 446 VPPRIL-APRNQLIKVIQYNRTRLDCPFFGSPIPTLRWFKNGQGNMLDGGNYKAHENGSL 504

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAV 332
           +++     D G YTC A N LG  +    L VK+ T I   PED  V+ G      C   
Sbjct: 505 EMSMARKEDQGIYTCVATNILGKVEAQVRLEVKDPTRIVRGPEDQVVKRGSMPRLHCRVK 564

Query: 333 SDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA 392
            DP+LKL++ WL+   P+   +    ++  D  LT+   +E D G YTC A TELD   A
Sbjct: 565 HDPTLKLTVTWLKDDAPLYIGNR---MKKEDDGLTIYGVAEKDQGDYTCVASTELDKDSA 621

Query: 393 QATLTVQVPLEAPSN 407
           +A LTV   L  P+N
Sbjct: 622 KAYLTV---LAIPAN 633

Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions.

Gallus gallus (taxid: 9031)

>sp|Q3UH53|SDK1_MOUSE Protein sidekick-1 OS=Mus musculus GN=Sdk1 PE=2 SV=1

 Score =  221 bits (562), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 191/622 (30%), Positives = 272/622 (43%), Gaps = 38/622 (6%)

Query: 42  KEVALRNKKVELFCIFGGTPLPQ--TIWSKDGVPINPSDRISQG--NYGKSLIIKHVEFS 97
           + V   + +  L CI    P+ +    W ++GV      R++ G  +YG+ L I +   +
Sbjct: 284 RSVVAGSSETTLECIANARPVEELSVHWKRNGV------RLTSGLHSYGRRLTITNPTSA 337

Query: 98  DQGSYTCEVS--NGVGEAKSYSIDLSVLAAPYFTVEPEF-INAAEEETVTFECKASGLPE 154
           D G Y CE +      E       LS++  PYFT EPE  I    EET+   C+A G+P 
Sbjct: 338 DTGMYVCEATLRGSTFEPARARAFLSIIEPPYFTAEPESRILGEVEETMDIPCRAMGVPL 397

Query: 155 PEIHWVHNGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
           P + W  +  P+S+   NPR KV P+  + I+ L   D+G + C A+N  G V    Y++
Sbjct: 398 PTLQWYKDAVPLSKLQ-NPRYKVLPSGGLHIQKLSPEDSGIFQCFASNEGGEVQTHTYLD 456

Query: 214 VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-----RYTILE 268
           V   AP  T+ P D    DG T VL C V GAPKP + W      L  G     R+ +LE
Sbjct: 457 VTNIAPAFTQRPVDTTVTDGMTAVLRCEVSGAPKPAITWKRGNHILASGSVRIPRFMLLE 516

Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFR 328
           +G L+I  V   D+G YTC+A N   +   S  LTV   T I   PED  V  G +AT  
Sbjct: 517 SGGLRIAPVFIQDAGNYTCYAANTEASVNASAMLTVWNRTSIVHPPEDRVVIKGTTATLC 576

Query: 329 CNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELD 388
           C A  DP   L  VW + +  I   S  R V   D SL ++++   D G YTC   +E  
Sbjct: 577 CGATHDPRTSLRYVWKKDNVVITASSSSRIVVEKDGSLVISQTWSGDIGDYTCEIISEGG 636

Query: 389 FIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDG 448
                A L V + L  P    L  +  A+   V+ + V P         Y VQ  +E + 
Sbjct: 637 SDSRTARLEV-IELPHPPQNLLASLSPARSHSVTLSWVRPFDGNSPVLYYIVQV-SENNS 694

Query: 449 EGSIRELIVNKG-ESTTTEVDKFVPASKNFARVLAFNGAYNGPPS-EIISFVTPEGVPGT 506
              +   + N G E T   V    PA     RV A N    G  S E    + PE  P  
Sbjct: 695 PWKVH--LSNVGPEMTGVTVSGLTPARTYQFRVCAVNQVGKGQYSTETSRLMLPEEPPSA 752

Query: 507 -VQSLEAIPLGSSAFYLKWVKPEQP--NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
             +++ A    + +  ++W  P +   NGVL GY ++Y+ + G    P   +   IS P 
Sbjct: 753 PPKNIVASGRTNQSIMVQWQPPPETEHNGVLRGYILRYR-LAGL---PGEHQQRNISSPE 808

Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKY-----LFYVPFKNPDNVEGRGSTPNNL 618
                +  L   T+Y I +A Y  AG G  S+      L  VP   P NV+        +
Sbjct: 809 VNYCLVTDLIIWTQYEIQVAAYNGAGLGVFSRAVTEYTLQGVPTAPPQNVQAEAVNSTTV 868

Query: 619 VISWTAMPEIEHNAPHFKYRIF 640
              W   P+   N  +  Y++ 
Sbjct: 869 HFLWNPPPQQFINGINQGYKLL 890

Cell adhesion protein that guides axonal terminals to specific synapses in developing neurons.

Mus musculus (taxid: 10090)

>sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule OS=Mus musculus GN=Nrcam PE=1 SV=2

 Score =  220 bits (560), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 164/523 (31%), Positives = 241/523 (46%), Gaps = 36/523 (6%)

Query: 46  LRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
           LR   + L CI  G P P   W K DG  + P++R    N+ K+L I HV  +D G+Y C
Sbjct: 277 LRGNVLSLECIAEGLPTPIIYWIKEDG--MLPANRTFYRNFKKTLQITHVSEADSGNYQC 334

Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK 164
              N +G A  ++I ++V AAPY+ V P+ +  +  E  T  C+A+G P+P I W+ NG 
Sbjct: 335 IAKNALG-AVHHTISVTVKAAPYWIVAPQNLVLSPGENGTLICRANGNPKPRISWLTNGV 393

Query: 165 PISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEA 224
           PI  A  +P RK+  + I   N+++S +  Y CNA+N  GY+  + +VNVLA  P I  +
Sbjct: 394 PIEIALDDPSRKIDGDTIIFSNVQESSSAVYQCNASNKYGYLLANAFVNVLAEPPRILTS 453

Query: 225 PKDEYTV-DGKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYTILETGDLKITDVAFAD 281
               Y V   +  +L C  FG+P P + W    K   L    Y + + G L+I       
Sbjct: 454 ANTLYQVIANRPALLDCAFFGSPMPTIEWFKGTKGSALHEDIYVLHDNGTLEIPVAQKDS 513

Query: 282 SGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSI 341
           +G YTC ARNKLG A+    L +K+ T I  QPE   V+ G   +F C    D +L  +I
Sbjct: 514 TGTYTCVARNKLGMAKNEVHLEIKDPTRIIKQPEYAVVQRGSKVSFECRVKHDHTLIPTI 573

Query: 342 VWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           +WL+ +   +  ++ RF    D+ L V+   + D G YTC A T LD   A A L V  P
Sbjct: 574 MWLKDNG--ELPNDERFSTDKDH-LVVSDVKDDDGGTYTCTANTTLDSASASAVLRVVAP 630

Query: 402 LEAPS----------NFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
              P+          +  L   +D K   ++W P    +       + ++        G 
Sbjct: 631 TPTPAPIYDVPNPPFDLELTNQLD-KSVQLTWTPGDDNN--SPITKFIIEYEDAMHDAGL 687

Query: 452 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE-----IISFVTPEGVPGT 506
            R      G  TT ++ K  P      RV+A N      PSE     +     P+  P  
Sbjct: 688 WRHQAEVSGTQTTAQL-KLSPYVNYSFRVMAENSIGRSMPSEASEQYLTKAAEPDQNPMA 746

Query: 507 VQSLEAIPLGSSAFYLKWVKPE---QPNGVLMGYKIKYQSVKG 546
           V+ L   P       + W KP    Q NG  + YK+ ++   G
Sbjct: 747 VEGLGTEP---DNLVITW-KPLNGFQSNGPGLQYKVSWRQKDG 785

Cell adhesion, ankyrin-binding protein involved in neuron-neuron adhesion. May play a role in the molecular assembly of the nodes of Ranvier.

Mus musculus (taxid: 10090)

>sp|Q7Z5N4|SDK1_HUMAN Protein sidekick-1 OS=Homo sapiens GN=SDK1 PE=1 SV=3

 Score =  219 bits (558), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 189/625 (30%), Positives = 276/625 (44%), Gaps = 44/625 (7%)

Query: 42  KEVALRNKKVELFCIFGGTPLPQ--TIWSKDGVPINPSDRISQG--NYGKSLIIKHVEFS 97
           + V   + +  L CI    P+      W ++GV      RI+ G  ++G+ L I +   +
Sbjct: 302 RSVVAGSSETTLECIASARPVEDLSVTWKRNGV------RITSGLHSFGRRLTISNPTSA 355

Query: 98  DQGSYTCEVS--NGVGEAKSYSIDLSVLAAPYFTVEPEF-INAAEEETVTFECKASGLPE 154
           D G Y CE +      E    +  L ++  PYFT EPE  I+A  EETV   C+A G+P 
Sbjct: 356 DTGPYVCEAALPGSAFEPARATAFLFIIEPPYFTAEPESRISAEVEETVDIGCQAMGVPL 415

Query: 155 PEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
           P + W  +   IS+   NPR KV     + I+ LR  D+G + C A+N  G +    Y++
Sbjct: 416 PTLQWYKDAISISRLQ-NPRYKVLASGGLRIQKLRPEDSGIFQCFASNEGGEIQTHTYLD 474

Query: 214 VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-----RYTILE 268
           V   AP  T+ P D    DG T +L C V GAPKP + W      L  G     R+ +LE
Sbjct: 475 VTNIAPVFTQRPVDTTVTDGMTAILRCEVSGAPKPAITWKRENHILASGSVRIPRFMLLE 534

Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFR 328
           +G L+I  V   D+G YTC+A N  G+   S +LTV   T I   PED+ V  G +AT  
Sbjct: 535 SGGLQIAPVFIQDAGNYTCYAANTEGSLNASATLTVWNRTSIVHPPEDHVVIKGTTATLH 594

Query: 329 CNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELD 388
           C A  DP + L  VW + +  +   S  R V   D SL ++++   D G Y+C   +E  
Sbjct: 595 CGATHDPRVSLRYVWKKDNVALTPSSTSRIVVEKDGSLLISQTWSGDIGDYSCEIVSEGG 654

Query: 389 FIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVV-SWNPVSPQSLRGHFRGYKVQTWTEKD 447
                A L V     +P N  +        AVV SW  V P         Y V+  +E +
Sbjct: 655 NDSRMARLEVIELPHSPQNLLVSPNSSHSHAVVLSW--VRPFDGNSPILYYIVEL-SENN 711

Query: 448 GEGSIRELIVNKG-ESTTTEVDKFVPASKNFARVLAFN----GAYNGPPSEIISFVTPEG 502
               +   + N G E T   V    PA     RV A N    G Y+   S ++    P  
Sbjct: 712 SPWKVH--LSNVGPEMTGVTVSGLTPARTYQFRVCAVNEVGRGQYSAETSRLMLPEEPPS 769

Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQP--NGVLMGYKIKYQSVKGTKVGPLLERLPYIS 560
            P   +++ A    + +  ++W  P +   NGVL GY ++Y+ + G   G   +R   I+
Sbjct: 770 APP--KNIVASGRTNQSIMVQWQPPPETEHNGVLRGYILRYR-LAGLP-GEYQQR--NIT 823

Query: 561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKY-----LFYVPFKNPDNVEGRGSTP 615
            P      +  L   T+Y I +A Y  AG G  S+      L  VP   P NV+      
Sbjct: 824 SPEVNYCLVTDLIIWTQYEIQVAAYNGAGLGVFSRAVTEYTLQGVPTAPPQNVQTEAVNS 883

Query: 616 NNLVISWTAMPEIEHNAPHFKYRIF 640
             +   W   P+   N  +  Y++ 
Sbjct: 884 TTIQFLWNPPPQQFINGINQGYKLL 908

Cell adhesion protein that guides axonal terminals to specific synapses in developing neurons. Dysregulation of this protein may play an important role in podocyte dysfunction in HIV-associated nephropathy.

Homo sapiens (taxid: 9606)

>sp|Q8AV57|SDK2_CHICK Protein sidekick-2 OS=Gallus gallus GN=SDK2 PE=2 SV=2

 Score =  218 bits (556), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 178/603 (29%), Positives = 266/603 (44%), Gaps = 32/603 (5%)

Query: 40  RKKEVALRNKKVELFCIFGGTPLPQ--TIWSKDGVPINPSDRISQGNYGKSLIIKHVEFS 97
           R   V     +V + C+    PL +   IW KDGVPI  S  IS  +Y + L I +    
Sbjct: 227 RNTSVVAGTSEVTMECVANARPLIKLHIIWKKDGVPI--SSGIS--DYSRRLTILNPTLG 282

Query: 98  DQGSYTCE--VSNGVGEAKSYSIDLSVLAAPYFTVEPE-FINAAEEETVTFECKASGLPE 154
           D G Y CE  + +    A +    LSVL  P F  EPE  I A  E+ V   C+A G+P 
Sbjct: 283 DSGYYECEAVLRSSSVPAVAEGAYLSVLEPPQFVKEPERHITAEMEKVVAIPCQAKGVPP 342

Query: 155 PEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           P++ W  +   I     +  + +    + I  L   DTG + C A N+ G V    Y+ V
Sbjct: 343 PDMAWYKDASLIHPEQLSRFQLLADGSLQISGLLPDDTGMFQCFARNAAGEVQTTTYLAV 402

Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-----RYTILET 269
            + AP IT  P+D   +DG +V+L C   GAP+P + W   ++ L  G     R+T+LE+
Sbjct: 403 TSIAPNITRGPQDSTVIDGMSVILNCETSGAPRPAITWQKGERILASGSVQLPRFTLLES 462

Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
           G L ++     D+G YTC A N  G  + S  L V   T ITD P+D  V  G  A+  C
Sbjct: 463 GSLLVSPAHLTDAGTYTCLATNSRGVDEASADLVVWARTRITDPPQDQSVIKGTKASMSC 522

Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
               DPS+ +  +W +   P+  ES PR       +L ++++   D G YTC+  +    
Sbjct: 523 GVTHDPSVDVRYIWEKDGAPLGTESGPRLRLDETGTLHISQTWSGDIGTYTCKVLSAGGN 582

Query: 390 IEAQATLTV-QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDG 448
               A L V Q+P    S   ++  ++ +   ++W    P         Y V+  +E + 
Sbjct: 583 DSRSAHLRVRQLPHAPESPVAVLSPLEKRAINLTW--AKPFDGNSPLLRYLVEI-SENNA 639

Query: 449 EGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT-PEGVP-GT 506
             ++    V+  E T   V   VPA     R+ A N       S+    V+ PE  P   
Sbjct: 640 PWTVLLASVDP-ELTWVVVRGLVPARSYQFRLCAVNDVGRSQFSKDTERVSLPEEPPFAP 698

Query: 507 VQSLEAIPLGSSAFYLKWVKPEQP--NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT 564
            Q++ A    + +  ++W  P +   NGVL GY I+Y  + G  VG    +   I++   
Sbjct: 699 PQNVIASGRTNQSIMIQWQPPPESHQNGVLKGYIIRY-CLAGLPVG---YQFKNITNADV 754

Query: 565 TSAKLAGLEPSTKYRIHLAGYTKAGDGAESK-----YLFYVPFKNPDNVEGRGSTPNNLV 619
            +  L  L   T Y I +A Y  AG G  S       L  VP   P NV+   +    + 
Sbjct: 755 NNLLLEDLIIWTNYEIEVAAYNSAGLGVYSMKVTEWTLQGVPTVPPGNVQTEATNSTTIR 814

Query: 620 ISW 622
            +W
Sbjct: 815 FTW 817

Synaptic adhesion molecule that promotes lamina-specific connectivity in the retina.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	745
328788305	1251	PREDICTED: neuroglian [Apis mellifera]	0.908	0.541	0.491	0.0
380025831	1251	PREDICTED: LOW QUALITY PROTEIN: neurogli	0.907	0.540	0.492	0.0
345498258	1248	PREDICTED: neuroglian-like isoform 2 [Na	0.911	0.544	0.485	1e-180
156546343	1254	PREDICTED: neuroglian-like isoform 1 [Na	0.911	0.541	0.485	1e-180
350399166	1247	PREDICTED: neuroglian-like isoform 2 [Bo	0.897	0.536	0.478	1e-176
350399162	1251	PREDICTED: neuroglian-like isoform 1 [Bo	0.897	0.534	0.478	1e-176
340714433	1251	PREDICTED: LOW QUALITY PROTEIN: neurogli	0.897	0.534	0.475	1e-174
242019922	1253	Neuroglian precursor, putative [Pediculu	0.578	0.343	0.665	1e-168
157118545	1182	cell adhesion molecule [Aedes aegypti] g	0.903	0.569	0.463	1e-167
170044415	1218	cell adhesion molecule [Culex quinquefas	0.903	0.552	0.463	1e-166

>gi|328788305|ref|XP_395296.3| PREDICTED: neuroglian [Apis mellifera]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/757 (49%), Positives = 463/757 (61%), Gaps = 80/757 (10%)

Query: 6   RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
           R+EYK+GNR+LLNVI++GISASQN+H P +QYV+RK EVALR KK+EL+CI+GGTPLPQ 
Sbjct: 213 RNEYKLGNRVLLNVISSGISASQNKHDPVKQYVSRKNEVALRGKKIELYCIYGGTPLPQI 272

Query: 66  IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           +WSK+G  I  +DRI QGNYGKSLIIKHV F D+G+YTCE SNGVG+AKSYSI L V+A 
Sbjct: 273 VWSKNGEVIRTNDRIMQGNYGKSLIIKHVNFKDKGTYTCEASNGVGDAKSYSIHLQVMAV 332

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           PYFT+EPE INAAE+ET+ F+C+A G+P PEI W+HNGKPIS+APPNPRRKV  N I IE
Sbjct: 333 PYFTIEPEIINAAEDETIEFKCEADGVPVPEIKWIHNGKPISEAPPNPRRKVTSNSIIIE 392

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
            L K DTGNYGCNATNSLGYVYKDVYVNVLA  PEIT+ P D  TVDGKTV +TCRVFGA
Sbjct: 393 KLTKKDTGNYGCNATNSLGYVYKDVYVNVLALEPEITQPPTDIATVDGKTVRITCRVFGA 452

Query: 246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           PKP V WI N +ELTGGRY  L++GDL+I +V F D+G YTC A NK G  +GSG+L VK
Sbjct: 453 PKPAVKWIRNGQELTGGRYKTLDSGDLEIENVIFLDAGIYTCHASNKFGEVEGSGNLVVK 512

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           EHT ITD+PEDYEV AG +ATFRCNAV+D SL L+I WL   EPIDFE EPRF++S DYS
Sbjct: 513 EHTRITDEPEDYEVAAGSTATFRCNAVTDSSLTLTIDWLSNGEPIDFEMEPRFIRSTDYS 572

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNP 425
           L +TK++ELDSG YTC A TELD  +AQATL VQ    AP   ++  +  A +A + W P
Sbjct: 573 LMITKTTELDSGTYTCIAHTELDEAKAQATLIVQDVPNAPKLISITCM--ATEASIHWTP 630

Query: 426 VSPQSLRGHFRGYKVQ---TWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS--KNFA-R 479
           +     R     Y +Q   T+T    E       ++K +    E    VP S   N+  R
Sbjct: 631 MGDN--RAPILRYTIQHNTTFTPDTWE-------ISKDDVPAIEQTYVVPMSPWTNYTFR 681

Query: 480 VLAFNGAYNGPPSEIISFVT-----PEGVPGTVQSLEAIPLGSSAFYLKW-VKPE-QPNG 532
           VLA+N      PS      T     P   P  V      P       + W V P+ + N 
Sbjct: 682 VLAWNKIGTSLPSPHSDVCTTLQDVPYKNPDNVMGKGTTP---QNLVISWTVMPQIEHNA 738

Query: 533 VLMGYKIKY-QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
               Y+I Y + + G K       +  I+D    +  +       +Y+I +    + G+ 
Sbjct: 739 PKFMYRIYYRRDIPGEKW-----TIEDITDWKKNNLVVDNQPTYQRYKIKVVAINEKGEC 793

Query: 592 --AESKYLFY----VPFKNPDNVE-GRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRH 644
             A  + + Y    VP + P N    +  +  +   SW  +PE         Y+I     
Sbjct: 794 RVAPEEVIGYSGEDVPLQAPSNFTLNQVKSSTSAQFSWNPVPEESVRGELKGYKI----- 848

Query: 645 NTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTT 704
                                              QTWTEKDGE  +RE+ +  G  T  
Sbjct: 849 -----------------------------------QTWTEKDGEKGMREIDIRGGNRTHA 873

Query: 705 EVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
            V KF+P SKN+ R+LA+NG Y+GPPSE +SF TPEG
Sbjct: 874 LVTKFIPFSKNYVRILAYNGRYSGPPSETLSFDTPEG 910

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025831|ref|XP_003696667.1| PREDICTED: LOW QUALITY PROTEIN: neuroglian-like [Apis florea]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/758 (49%), Positives = 464/758 (61%), Gaps = 82/758 (10%)

Query: 6   RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
           R+EYK+GNR+LLNVI++GISASQN+H P +QYV+RK EVALR KK+EL+CI+GGTPLPQ 
Sbjct: 213 RNEYKLGNRVLLNVISSGISASQNKHDPVKQYVSRKNEVALRGKKIELYCIYGGTPLPQI 272

Query: 66  IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           +WSK+G  I  +DRI QGNYGKSLIIKHV F D+G+YTCE SNGVG+AKSYSI L V+A 
Sbjct: 273 VWSKNGEVIRTNDRIMQGNYGKSLIIKHVNFKDEGTYTCEASNGVGDAKSYSIHLQVMAV 332

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           PYFT+EPE INAAE+ET+ F+C+A G+P PEI W+HNGKPIS+APPNPRRKV  N I IE
Sbjct: 333 PYFTIEPEIINAAEDETIEFKCEADGVPVPEIKWIHNGKPISEAPPNPRRKVTSNSIIIE 392

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
            L K DT NYGCNATNSLGYVYKDVYVNVLA  PEIT+ P D  TVDGKTV +TCRVFGA
Sbjct: 393 KLTKKDTXNYGCNATNSLGYVYKDVYVNVLALEPEITQPPTDIATVDGKTVRITCRVFGA 452

Query: 246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           PKP V WI N +ELTGGRY  L++GDL+I +V F D+G YTC A NK G  +GSG+L VK
Sbjct: 453 PKPAVKWIRNGQELTGGRYKTLDSGDLEIENVIFLDAGIYTCHASNKFGEVEGSGNLVVK 512

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           EHT ITD+PEDYEV AG +ATFRCNAV+D SL L+I WL   EPIDFE EPRF++S DYS
Sbjct: 513 EHTKITDEPEDYEVAAGSTATFRCNAVTDSSLTLTIDWLSNGEPIDFEMEPRFIRSTDYS 572

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV-IDAKKAVVSWN 424
           L +TK++ELDSG YTC A TELD  +AQATL VQ   + P+   LI V     +A + W 
Sbjct: 573 LMITKTTELDSGTYTCVAHTELDEAKAQATLIVQ---DVPNAPKLISVTCMTTEASIHWT 629

Query: 425 PVSPQSLRGHFRGYKVQ---TWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS--KNFA- 478
           P+     R     Y +Q   T+T    E       ++K +   TE    VP S   N+  
Sbjct: 630 PMGDN--RAPILRYTIQHNTTFTPDTWE-------ISKDDVPATEQTYIVPMSPWTNYTF 680

Query: 479 RVLAFNGAYNGPPSEIISFVT-----PEGVPGTVQSLEAIPLGSSAFYLKW-VKPE-QPN 531
           RVLA+N      PS      T     P   P  V      P       + W V P+ + N
Sbjct: 681 RVLAWNKIGTSLPSPHSDVCTTLQDVPYKNPDNVMGKGTTP---QNLVISWTVMPQIEHN 737

Query: 532 GVLMGYKIKY-QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGD 590
                Y++ Y + + G K       +  I+D    S  +       +Y+I +    + G+
Sbjct: 738 APKFMYRVYYRRDIPGEKW-----TIEDITDWKKNSLVVDNQPTYQRYKIKVVAINEKGE 792

Query: 591 G--AESKYLFY----VPFKNPDNVE-GRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRR 643
              A  + + Y    VP + P N    +  +  +   SW ++PE         Y+I    
Sbjct: 793 CRVAPEEVIGYSGEDVPLQAPSNFTLNQVKSSTSAQFSWNSVPEESVRGELKGYKI---- 848

Query: 644 HNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTT 703
                                               QTWTEKDGE  +RE+ +  G  T 
Sbjct: 849 ------------------------------------QTWTEKDGEKGMREIDIRGGNRTH 872

Query: 704 TEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
             V KF+P SKN+ R+LA+NG Y+GPPSE +SF TPEG
Sbjct: 873 ALVTKFIPFSKNYVRILAYNGRYSGPPSETLSFDTPEG 910

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498258|ref|XP_003428190.1| PREDICTED: neuroglian-like isoform 2 [Nasonia vitripennis]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 367/756 (48%), Positives = 466/756 (61%), Gaps = 77/756 (10%)

Query: 6   RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
           R+EYK+GNR+LLNVI+TG +AS N+  P +QYV+RK EVALR KK+ELFCIFGGTPLP T
Sbjct: 213 RNEYKLGNRVLLNVISTGSTASSNKREPVKQYVSRKNEVALRGKKIELFCIFGGTPLPLT 272

Query: 66  IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           +WSK+G  I P+DR+++GNYGKSLIIKHV F D+G+YTC+VSNGVG A+SYSI+L VL+ 
Sbjct: 273 VWSKNGQRIRPNDRVTEGNYGKSLIIKHVNFDDEGTYTCDVSNGVGSAQSYSINLEVLSV 332

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           PYFTVEPE +NAAE+ETV F+C+A+G+P+PEI W+HNGKPIS+AP NPRRKV PN I IE
Sbjct: 333 PYFTVEPEIVNAAEDETVEFKCEATGVPKPEIKWIHNGKPISEAPFNPRRKVTPNSIIIE 392

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
            L K+DTGNYGCNATNSLGYVYKDVYVNVLA  PEI + P DE TVDGKT+ LTCRVFGA
Sbjct: 393 KLLKNDTGNYGCNATNSLGYVYKDVYVNVLALEPEILQPPMDESTVDGKTIRLTCRVFGA 452

Query: 246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           PKPEV W+ N +ELTGGRY ILE+GDL+I +V F+D+GEY C A NK G    +G L VK
Sbjct: 453 PKPEVKWVRNGQELTGGRYKILESGDLEIENVIFSDAGEYNCHASNKFGKVNATGFLAVK 512

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           EHT ITD PEDYEV AG +ATFRCNAV+D +L+L I WL   EPIDFE+EPRF++S DYS
Sbjct: 513 EHTRITDVPEDYEVAAGATATFRCNAVTDSTLELHIDWLSKGEPIDFEAEPRFIRSTDYS 572

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV-IDAKKAVVSWN 424
           L +TK++ELDSG YTC A+T+LD   AQATL VQ   + P++ TL+ V   + +A VSW 
Sbjct: 573 LMITKTTELDSGTYTCVARTDLDEARAQATLIVQ---DVPNSPTLLGVSCTSNQAFVSWT 629

Query: 425 PVSPQSLRGHFRGYKVQ---TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL 481
           P+     R     Y +Q   ++T    E +   +   +         +  P +    RV+
Sbjct: 630 PMGDN--RSPILRYAIQYNTSFTPDTWEYAKDHVPATEQRYAV----QMSPWANYTFRVI 683

Query: 482 AFNGAYNGPPSEIISFVT-----PEGVPGTVQSLEAIPLGSSAFYLKW-VKPEQPNGVLM 535
           A+N      PS+     T     P   P  V      P       + W V P+  +    
Sbjct: 684 AYNKIGPSQPSQHSHVCTTLPDVPYNNPDNVMGRGDDP---QNLVISWTVMPQIEHNAP- 739

Query: 536 GYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE-- 593
             K KYQ      +     R+  I++    +  +       KY+I +    + G+  E  
Sbjct: 740 --KFKYQVYYKRDIPGEDWRIEEITNWKQNTLVINNQPTYQKYKIKVGALNEKGECREPP 797

Query: 594 SKYLFY----VPFKNPDN---VEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNT 646
            + + Y    VP  +P N   VE R ST    ++SWT + E         Y+I       
Sbjct: 798 QEVIGYSGEDVPTASPGNFTLVEVRSST--TALLSWTPVAEETVKGELRGYKI------- 848

Query: 647 GEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGE-GSIRELIVNKGESTTTE 705
            E W                                T+KDGE  + RE  V  G  T   
Sbjct: 849 -ETW--------------------------------TDKDGEPNNPREHNVKGGNKTYAL 875

Query: 706 VDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
           V KF+P SKNF R+ A+NG +NGPPSE++SF TPEG
Sbjct: 876 VTKFIPFSKNFVRIRAYNGRFNGPPSEVLSFETPEG 911

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546343|ref|XP_001606583.1| PREDICTED: neuroglian-like isoform 1 [Nasonia vitripennis]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 367/756 (48%), Positives = 466/756 (61%), Gaps = 77/756 (10%)

Query: 6   RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
           R+EYK+GNR+LLNVI+TG +AS N+  P +QYV+RK EVALR KK+ELFCIFGGTPLP T
Sbjct: 213 RNEYKLGNRVLLNVISTGSTASSNKREPVKQYVSRKNEVALRGKKIELFCIFGGTPLPLT 272

Query: 66  IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           +WSK+G  I P+DR+++GNYGKSLIIKHV F D+G+YTC+VSNGVG A+SYSI+L VL+ 
Sbjct: 273 VWSKNGQRIRPNDRVTEGNYGKSLIIKHVNFDDEGTYTCDVSNGVGSAQSYSINLEVLSV 332

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           PYFTVEPE +NAAE+ETV F+C+A+G+P+PEI W+HNGKPIS+AP NPRRKV PN I IE
Sbjct: 333 PYFTVEPEIVNAAEDETVEFKCEATGVPKPEIKWIHNGKPISEAPFNPRRKVTPNSIIIE 392

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
            L K+DTGNYGCNATNSLGYVYKDVYVNVLA  PEI + P DE TVDGKT+ LTCRVFGA
Sbjct: 393 KLLKNDTGNYGCNATNSLGYVYKDVYVNVLALEPEILQPPMDESTVDGKTIRLTCRVFGA 452

Query: 246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           PKPEV W+ N +ELTGGRY ILE+GDL+I +V F+D+GEY C A NK G    +G L VK
Sbjct: 453 PKPEVKWVRNGQELTGGRYKILESGDLEIENVIFSDAGEYNCHASNKFGKVNATGFLAVK 512

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           EHT ITD PEDYEV AG +ATFRCNAV+D +L+L I WL   EPIDFE+EPRF++S DYS
Sbjct: 513 EHTRITDVPEDYEVAAGATATFRCNAVTDSTLELHIDWLSKGEPIDFEAEPRFIRSTDYS 572

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV-IDAKKAVVSWN 424
           L +TK++ELDSG YTC A+T+LD   AQATL VQ   + P++ TL+ V   + +A VSW 
Sbjct: 573 LMITKTTELDSGTYTCVARTDLDEARAQATLIVQ---DVPNSPTLLGVSCTSNQAFVSWT 629

Query: 425 PVSPQSLRGHFRGYKVQ---TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL 481
           P+     R     Y +Q   ++T    E +   +   +         +  P +    RV+
Sbjct: 630 PMGDN--RSPILRYAIQYNTSFTPDTWEYAKDHVPATEQRYAV----QMSPWANYTFRVI 683

Query: 482 AFNGAYNGPPSEIISFVT-----PEGVPGTVQSLEAIPLGSSAFYLKW-VKPEQPNGVLM 535
           A+N      PS+     T     P   P  V      P       + W V P+  +    
Sbjct: 684 AYNKIGPSQPSQHSHVCTTLPDVPYNNPDNVMGRGDDP---QNLVISWTVMPQIEHNAP- 739

Query: 536 GYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE-- 593
             K KYQ      +     R+  I++    +  +       KY+I +    + G+  E  
Sbjct: 740 --KFKYQVYYKRDIPGEDWRIEEITNWKQNTLVINNQPTYQKYKIKVGALNEKGECREPP 797

Query: 594 SKYLFY----VPFKNPDN---VEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNT 646
            + + Y    VP  +P N   VE R ST    ++SWT + E         Y+I       
Sbjct: 798 QEVIGYSGEDVPTASPGNFTLVEVRSST--TALLSWTPVAEETVKGELRGYKI------- 848

Query: 647 GEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGE-GSIRELIVNKGESTTTE 705
            E W                                T+KDGE  + RE  V  G  T   
Sbjct: 849 -ETW--------------------------------TDKDGEPNNPREHNVKGGNKTYAL 875

Query: 706 VDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
           V KF+P SKNF R+ A+NG +NGPPSE++SF TPEG
Sbjct: 876 VTKFIPFSKNFVRIRAYNGRFNGPPSEVLSFETPEG 911

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399166|ref|XP_003485439.1| PREDICTED: neuroglian-like isoform 2 [Bombus impatiens]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 366/765 (47%), Positives = 460/765 (60%), Gaps = 96/765 (12%)

Query: 6   RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
           R+EYK+GNR+LLNVI++GISASQN++ P +QYV+RK EVALR KK+EL+CI GGTPLPQ 
Sbjct: 213 RNEYKLGNRVLLNVISSGISASQNKYEPVKQYVSRKNEVALRGKKIELYCIHGGTPLPQI 272

Query: 66  IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           +WSK+G  I  +DRI QGNYGKSLIIKHV   D+G+YTCE SNGVG+AKSYSI L V+A 
Sbjct: 273 VWSKNGEVIKTNDRIMQGNYGKSLIIKHVNSKDEGTYTCEASNGVGDAKSYSIHLQVMAV 332

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           PYFT+EPE INAAE+ETV F+C A+G+P PEI W+HNGKPIS+APPNPRRKV PN I IE
Sbjct: 333 PYFTIEPEIINAAEDETVEFKCAANGVPVPEIKWIHNGKPISEAPPNPRRKVTPNSIIIE 392

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
            L K DTGNYGCNATNSLGYVYKDVYVNVLA  PEIT+ P D  TVDGK V +TCRVFGA
Sbjct: 393 KLTKKDTGNYGCNATNSLGYVYKDVYVNVLALEPEITQPPADIATVDGKIVRITCRVFGA 452

Query: 246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           PKP V WI N +ELTGGRY  L++GDL+I +V F D+G YTC A NK G  + SG+L VK
Sbjct: 453 PKPAVKWIRNGQELTGGRYKTLDSGDLEIENVIFLDAGTYTCHASNKFGEIEASGNLAVK 512

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           EHT ITD+PEDYEV AG +ATFRCNAV+D SL L+I WL   EPIDFE EPRF++S DYS
Sbjct: 513 EHTRITDEPEDYEVAAGSTATFRCNAVTDSSLTLTIDWLSNGEPIDFEMEPRFIRSTDYS 572

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV-IDAKKAVVSWN 424
           L +TK++ELD+G YTC A TELD  +AQATL VQ   + P+   L+ V      A + W 
Sbjct: 573 LMITKTTELDTGTYTCVAHTELDEAKAQATLVVQ---DVPNPPKLVSVNCAGTTATIHWT 629

Query: 425 PVSPQSLRGHFRGYKVQ---TWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS--KNFA- 478
           P+     R     Y +Q   ++T    E       ++K    +TE    VP S   N+  
Sbjct: 630 PMGDN--RAPILRYTIQHNTSFTPDTWE-------ISKDPVPSTEQTYDVPMSPWANYTF 680

Query: 479 RVLAFNGAYNGPPS---------EIISFVTPEGVPG---TVQSLEAIPLGSSAFYLKW-V 525
           RVLA+N      PS         + + F  P+ V G   T Q+L           + W V
Sbjct: 681 RVLAWNKIGPSLPSPHSDVCTTLQDVPFTNPDNVMGKGTTPQNL----------VISWTV 730

Query: 526 KPE-QPNGVLMGYKIKY-QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA 583
            P+ + N     Y++ Y + + G K       +  I D    S  +       +Y+I + 
Sbjct: 731 MPQIEHNAPKFMYRVYYRRDIPGEKW-----TIEDIHDWKKNSLVVDNQPTYQRYKIKVV 785

Query: 584 GYTKAGDG--AESKYLFY----VPFKNPDNVE-GRGSTPNNLVISWTAMPEIEHNAPHFK 636
              + G+   A  +   Y    VP + P N    +  +  +   SW  +PE         
Sbjct: 786 AINERGECRVAPEEVTGYSGEDVPLQAPSNFTLNQVKSSTSAQFSWNPVPEESVRGELQG 845

Query: 637 YRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIV 696
           Y+I        + W + D                                GE  +RE+ +
Sbjct: 846 YKI--------QTWTEKD--------------------------------GEKGMREIDI 865

Query: 697 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
             G  T   V KFVP +KN+ R+LA+NG Y GPPSE +SF TPEG
Sbjct: 866 RGGNRTHALVTKFVPFNKNYVRILAYNGRYAGPPSETLSFDTPEG 910

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399162|ref|XP_003485438.1| PREDICTED: neuroglian-like isoform 1 [Bombus impatiens]

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 366/765 (47%), Positives = 460/765 (60%), Gaps = 96/765 (12%)

Query: 6   RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
           R+EYK+GNR+LLNVI++GISASQN++ P +QYV+RK EVALR KK+EL+CI GGTPLPQ 
Sbjct: 213 RNEYKLGNRVLLNVISSGISASQNKYEPVKQYVSRKNEVALRGKKIELYCIHGGTPLPQI 272

Query: 66  IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           +WSK+G  I  +DRI QGNYGKSLIIKHV   D+G+YTCE SNGVG+AKSYSI L V+A 
Sbjct: 273 VWSKNGEVIKTNDRIMQGNYGKSLIIKHVNSKDEGTYTCEASNGVGDAKSYSIHLQVMAV 332

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           PYFT+EPE INAAE+ETV F+C A+G+P PEI W+HNGKPIS+APPNPRRKV PN I IE
Sbjct: 333 PYFTIEPEIINAAEDETVEFKCAANGVPVPEIKWIHNGKPISEAPPNPRRKVTPNSIIIE 392

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
            L K DTGNYGCNATNSLGYVYKDVYVNVLA  PEIT+ P D  TVDGK V +TCRVFGA
Sbjct: 393 KLTKKDTGNYGCNATNSLGYVYKDVYVNVLALEPEITQPPADIATVDGKIVRITCRVFGA 452

Query: 246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           PKP V WI N +ELTGGRY  L++GDL+I +V F D+G YTC A NK G  + SG+L VK
Sbjct: 453 PKPAVKWIRNGQELTGGRYKTLDSGDLEIENVIFLDAGTYTCHASNKFGEIEASGNLAVK 512

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           EHT ITD+PEDYEV AG +ATFRCNAV+D SL L+I WL   EPIDFE EPRF++S DYS
Sbjct: 513 EHTRITDEPEDYEVAAGSTATFRCNAVTDSSLTLTIDWLSNGEPIDFEMEPRFIRSTDYS 572

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV-IDAKKAVVSWN 424
           L +TK++ELD+G YTC A TELD  +AQATL VQ   + P+   L+ V      A + W 
Sbjct: 573 LMITKTTELDTGTYTCVAHTELDEAKAQATLVVQ---DVPNPPKLVSVNCAGTTATIHWT 629

Query: 425 PVSPQSLRGHFRGYKVQ---TWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS--KNFA- 478
           P+     R     Y +Q   ++T    E       ++K    +TE    VP S   N+  
Sbjct: 630 PMGDN--RAPILRYTIQHNTSFTPDTWE-------ISKDPVPSTEQTYDVPMSPWANYTF 680

Query: 479 RVLAFNGAYNGPPS---------EIISFVTPEGVPG---TVQSLEAIPLGSSAFYLKW-V 525
           RVLA+N      PS         + + F  P+ V G   T Q+L           + W V
Sbjct: 681 RVLAWNKIGPSLPSPHSDVCTTLQDVPFTNPDNVMGKGTTPQNL----------VISWTV 730

Query: 526 KPE-QPNGVLMGYKIKY-QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA 583
            P+ + N     Y++ Y + + G K       +  I D    S  +       +Y+I + 
Sbjct: 731 MPQIEHNAPKFMYRVYYRRDIPGEKW-----TIEDIHDWKKNSLVVDNQPTYQRYKIKVV 785

Query: 584 GYTKAGDG--AESKYLFY----VPFKNPDNVE-GRGSTPNNLVISWTAMPEIEHNAPHFK 636
              + G+   A  +   Y    VP + P N    +  +  +   SW  +PE         
Sbjct: 786 AINERGECRVAPEEVTGYSGEDVPLQAPSNFTLNQVKSSTSAQFSWNPVPEESVRGELQG 845

Query: 637 YRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIV 696
           Y+I        + W + D                                GE  +RE+ +
Sbjct: 846 YKI--------QTWTEKD--------------------------------GEKGMREIDI 865

Query: 697 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
             G  T   V KFVP +KN+ R+LA+NG Y GPPSE +SF TPEG
Sbjct: 866 RGGNRTHALVTKFVPFNKNYVRILAYNGRYAGPPSETLSFDTPEG 910

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714433|ref|XP_003395733.1| PREDICTED: LOW QUALITY PROTEIN: neuroglian-like [Bombus terrestris]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 364/765 (47%), Positives = 458/765 (59%), Gaps = 96/765 (12%)

Query: 6   RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
           R+EYK+GNR+LLNVI++GISASQN++ P +QYV+ K EVALR KK EL+CI GGTPLPQ 
Sbjct: 213 RNEYKLGNRVLLNVISSGISASQNKYEPVKQYVSXKNEVALRGKKXELYCIHGGTPLPQI 272

Query: 66  IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           +WSK+G  I  +DRI QGNYGKSLIIKHV   D+G+YTCE SNGVG+AKSYSI L V+A 
Sbjct: 273 VWSKNGEVIRTNDRIMQGNYGKSLIIKHVNSKDEGTYTCEASNGVGDAKSYSIHLQVMAV 332

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           PYFT+EPE INAAE+ETV F+C A+G+P PEI W+HNGKPIS+APPNPRRKV PN I IE
Sbjct: 333 PYFTIEPEIINAAEDETVEFKCAANGVPVPEIKWIHNGKPISEAPPNPRRKVTPNSIIIE 392

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
            L K DTGNYGCNATNSLGYVYKDVYVNVLA  PEIT+ P D  TVDGK V +TCRVFGA
Sbjct: 393 KLTKKDTGNYGCNATNSLGYVYKDVYVNVLALEPEITQPPADIATVDGKIVRITCRVFGA 452

Query: 246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           PKP V WI N +ELTGGRY  L++GDL+I +V F D+G YTC A NK G  + SG+L VK
Sbjct: 453 PKPAVKWIRNGQELTGGRYKTLDSGDLEIENVIFLDAGTYTCHASNKFGEIEASGNLAVK 512

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           EHT ITD+PEDYEV AG +ATFRCNAV+D SL L+I WL   EPIDFE EPRF++S DYS
Sbjct: 513 EHTRITDEPEDYEVAAGSTATFRCNAVTDSSLTLTIDWLSNGEPIDFEMEPRFIRSTDYS 572

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV-IDAKKAVVSWN 424
           L +TK++ELD+G YTC A TELD  +AQATL VQ   + P+   L+ V      A + W 
Sbjct: 573 LMITKTTELDTGTYTCVAHTELDEAKAQATLVVQ---DVPNPPKLVSVNCAGSTATIHWT 629

Query: 425 PVSPQSLRGHFRGYKVQ---TWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS--KNFA- 478
           P+     R     Y +Q   ++T    E       ++K    +TE    VP S   N+  
Sbjct: 630 PMGDN--RAPILRYTIQHNTSFTPDTWE-------ISKDPVPSTEQTYDVPMSPWANYTF 680

Query: 479 RVLAFNGAYNGPPS---------EIISFVTPEGVPG---TVQSLEAIPLGSSAFYLKW-V 525
           RVLA+N      PS         + + F  P+ V G   T Q+L           + W V
Sbjct: 681 RVLAWNKIGPSLPSPHSDVCTTLQDVPFTNPDNVMGKGTTPQNL----------VISWTV 730

Query: 526 KPE-QPNGVLMGYKIKY-QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA 583
            P+ + N     Y++ Y + + G K       +  I D    +  +       +Y+I + 
Sbjct: 731 MPQIEHNAPKFMYRVYYRRDIPGEKW-----TIEDIHDWKKNNLVVDNQPTYQRYKIKVV 785

Query: 584 GYTKAGDG--AESKYLFY----VPFKNPDNVE-GRGSTPNNLVISWTAMPEIEHNAPHFK 636
              + G+   A  +   Y    VP + P N    +  +  +   SW  +PE         
Sbjct: 786 AINERGECRIAPEEVTGYSGEDVPLQAPSNFTLNQVKSSTSAQFSWNPVPEESVRGELQG 845

Query: 637 YRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIV 696
           Y+I        + W + D                                GE  +RE+ +
Sbjct: 846 YKI--------QTWTEKD--------------------------------GEKGMREIDI 865

Query: 697 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
             G  T   V KFVP +KN+ R+LA+NG Y GPPSE +SF TPEG
Sbjct: 866 RGGNRTHALVTKFVPFNKNYVRILAYNGRYAGPPSETLSFDTPEG 910

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019922|ref|XP_002430407.1| Neuroglian precursor, putative [Pediculus humanus corporis] gi|212515537|gb|EEB17669.1| Neuroglian precursor, putative [Pediculus humanus corporis]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/437 (66%), Positives = 343/437 (78%), Gaps = 6/437 (1%)

Query: 6   RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
           R+EYKIGN + L VIATGI+ASQNR  P QQYV+RK E+ALR K+VELFCIFGGTPLPQ 
Sbjct: 214 RNEYKIGNTVALKVIATGIAASQNRQEPVQQYVSRKNEIALRGKRVELFCIFGGTPLPQI 273

Query: 66  IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           +WSKDG PI  +DR++QG+YGKSLIIKHV F D GSY CE SNGVG+AKSYSI L+VLA 
Sbjct: 274 VWSKDGQPIRLNDRMTQGHYGKSLIIKHVTFEDAGSYVCEASNGVGQAKSYSIGLTVLAV 333

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           PYFTV+PE INAAE ETV F C+A+G+PEP+I W+HNG PI+ APPNPRRKV PN I IE
Sbjct: 334 PYFTVQPEIINAAEGETVEFRCEANGVPEPQIKWIHNGLPIALAPPNPRRKVTPNSIVIE 393

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
            L K DTGNYGCNATNSLGYVYKDVYVNVLA  PEI  +P D+ TVDG+TV+LTCRVFGA
Sbjct: 394 KLDKLDTGNYGCNATNSLGYVYKDVYVNVLALPPEILTSPTDKETVDGRTVILTCRVFGA 453

Query: 246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           PKPEV WI N  ELTGGRY  L +GDL+I DV F D+G+YTC+A+NK G  + SGSL+VK
Sbjct: 454 PKPEVKWIRNSMELTGGRYNTLSSGDLEIKDVNFLDAGQYTCYAQNKFGHIEASGSLSVK 513

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           EHT ITD PEDYE+  G +ATFRCNAV+D +L L+I WL+  E IDF+SEPRFV+S DYS
Sbjct: 514 EHTKITDAPEDYEIPIGTTATFRCNAVTDSTLALTIDWLKDGEVIDFDSEPRFVKSADYS 573

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV-IDAKKAVVSWN 424
           LT+TK++ELDSG YTC A+T+LD  EAQATLTVQ   + P+   LI+V  +   A + W 
Sbjct: 574 LTITKTTELDSGVYTCLAKTDLDKAEAQATLTVQ---DVPNAPRLIKVQCNRMDASIRWE 630

Query: 425 PVSPQSLRGHFRGYKVQ 441
           P+     R     Y +Q
Sbjct: 631 PLGDN--RAPILSYTIQ 645

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118545|ref|XP_001659157.1| cell adhesion molecule [Aedes aegypti] gi|108875668|gb|EAT39893.1| AAEL008340-PA, partial [Aedes aegypti]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 352/760 (46%), Positives = 449/760 (59%), Gaps = 87/760 (11%)

Query: 6   RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
           R+EYKIGNR+LL V  TGISA+QN+H P++QYV+RK EVALR KK+E+FCI+GGTPLPQ 
Sbjct: 150 RNEYKIGNRVLLQVKPTGISAAQNKHRPERQYVSRKNEVALRGKKIEIFCIYGGTPLPQV 209

Query: 66  IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           +W+KDG PI  SD+I Q NYGKSL+IKH  F DQG+YTCE SNGVG A+SYSI L V A 
Sbjct: 210 VWTKDGRPIQWSDKIQQNNYGKSLVIKHASFEDQGTYTCESSNGVGSAESYSIRLEVQAV 269

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           PYFT EPE  NAAE+ET  F C+ASG+P+P I W+HNGKP+ Q+ PNPRR+V  NRI   
Sbjct: 270 PYFTKEPEIYNAAEDETAEFTCEASGVPKPNIIWIHNGKPLDQSKPNPRRQVSSNRIYFT 329

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
            L K DTGNYGCNATNSLGYVYKDVY+NVLA APEITE PK EYTVD + V +TCRVFGA
Sbjct: 330 KLEKGDTGNYGCNATNSLGYVYKDVYLNVLALAPEITEPPKLEYTVDRRNVTMTCRVFGA 389

Query: 246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           PKPEV WI N +ELTGG++ +   GDL I  V F+D+GEYTC A NKLG    SG L VK
Sbjct: 390 PKPEVKWIRNGRELTGGKFKVEANGDLFIRGVEFSDAGEYTCNAVNKLGEKSASGELVVK 449

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           EHT I D+P+DYEV AG  ATFRCNAV+D SL+L+I WL   E IDFES+PRFV +NDYS
Sbjct: 450 EHTKIIDEPQDYEVVAGTPATFRCNAVADSSLELTIEWLTNGETIDFESQPRFVMTNDYS 509

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKK--AVVSW 423
           LT++K+ ELD+G YTC A+T+LD + A ATLTV     APS    ++ I+  +  A +SW
Sbjct: 510 LTISKTIELDTGVYTCFARTDLDEVMANATLTVYDRPNAPS----LESIECHQTVATLSW 565

Query: 424 NPVSPQSLRGHFRGYKVQ---TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 480
            P      R     Y ++   ++T    E S +++        T  VD   P S    RV
Sbjct: 566 KPNGDN--RSPILHYTIEFNTSFTPDTWEISSKDV---PATDFTYSVD-MSPWSNYTFRV 619

Query: 481 LAFNGAYNGPPS---------EIISFVTPEGVPGTVQSLEAIPLGSSAFYLKW--VKPEQ 529
           +A N      PS           + F  P+ V G  Q  E      +   ++W  +   +
Sbjct: 620 IAINKVGPSLPSGHSDVCTTQPSVPFKNPDNVEG--QGTEP-----NNLVIRWTPMSEIE 672

Query: 530 PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAG 589
            N     Y++ +Q   G       +    I D   +   +   E   +YRI +    + G
Sbjct: 673 HNAPRFQYRVYWQLDTGVDHWNTED----IFDWRQSELVVRDQETFRRYRIKVVAINELG 728

Query: 590 DG--AESKYLFYV----PFKNPDNVEG-RGSTPNNLVISWTAMPEIEHNAPHFK-YRIFW 641
           +   A  + + Y     P   P N    + + P + ++SW  + E E    HFK Y+I  
Sbjct: 729 EANVAPKEVIGYSGEDKPLDAPTNFTLIQVTAPTSAILSWNPVSE-ESIRGHFKGYKI-- 785

Query: 642 RRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGES 701
                 + W   D                                GE ++RE++V   +S
Sbjct: 786 ------QTWTDAD--------------------------------GEENLREILVT-ADS 806

Query: 702 TTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
               V  FVP S N+AR+LA+NG +NGPPS  +SF TPEG
Sbjct: 807 KQALVTDFVPDSTNYARILAYNGRFNGPPSTTLSFDTPEG 846

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170044415|ref|XP_001849844.1| cell adhesion molecule [Culex quinquefasciatus] gi|167867576|gb|EDS30959.1| cell adhesion molecule [Culex quinquefasciatus]

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 352/760 (46%), Positives = 451/760 (59%), Gaps = 87/760 (11%)

Query: 6   RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
           R+EYKIGNR++L V  TGISA+QNRH P++QYV+RK EVALR KK+ELFCI+GGTPLPQ 
Sbjct: 163 RNEYKIGNRVVLQVKQTGISAAQNRHRPERQYVSRKNEVALRGKKIELFCIYGGTPLPQV 222

Query: 66  IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           +W+KDG  I  +D+I Q NYGKSL+IKH  F DQG+YTCE SNGVG A+SYSI L V A 
Sbjct: 223 VWTKDGRAIQWNDKIQQNNYGKSLVIKHATFEDQGTYTCESSNGVGSAESYSIRLEVQAI 282

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           PYFT +PE +  AEEET  F C+A+G+P+P I W+HNGKPI Q PPNPRR V  NRI   
Sbjct: 283 PYFTTQPESVIKAEEETAEFRCEATGVPKPNIIWIHNGKPIEQTPPNPRRFVSGNRIFFN 342

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
            L KSDTGNYGCNATNSLGYVYKDVY+NVLA  PEI+E P+ E+TVD + V LTCRVFGA
Sbjct: 343 KLEKSDTGNYGCNATNSLGYVYKDVYLNVLALPPEISEPPRREHTVDRRNVTLTCRVFGA 402

Query: 246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           PKPEV WI N +ELTGGRY +L TGDL I  V F+D+G+YTC A NKLG     G L VK
Sbjct: 403 PKPEVKWIRNGRELTGGRYQVLPTGDLFIRGVEFSDAGQYTCNAVNKLGEKSADGELIVK 462

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           EHT I D+P+DYEV AG  ATFRCNAV+D SL L+I WL   EPIDF+++PRFV +NDYS
Sbjct: 463 EHTKIIDEPQDYEVVAGTPATFRCNAVADSSLALTIEWLTNGEPIDFDTQPRFVMTNDYS 522

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAV--VSW 423
           LT+TK+ ELD+G Y+C A+T+LD + A ATLTV     APS    ++ I+  +AV  +SW
Sbjct: 523 LTITKTIELDTGVYSCVAKTDLDEVIANATLTVYDRPNAPS----LEGIECHQAVATLSW 578

Query: 424 NPVSPQSLRGHFRGYKVQ---TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 480
            P      R     Y ++   ++T    E S +++        T  VD   P S    RV
Sbjct: 579 TPNGDN--RSPILHYTIEYNTSFTPDTWEISSKDV---PATDFTYSVD-MSPWSNYTFRV 632

Query: 481 LAFNGAYNGPP---SEI------ISFVTPEGVPGTVQSLEAIPLGSSAFYLKW--VKPEQ 529
           +A N      P   SE+      + F  P+ V G  Q  E      +   +KW  +   +
Sbjct: 633 IAINKVGPSSPSGHSEVCTTQPSVPFKNPDNVEG--QGTEP-----NNLVIKWTPMSEIE 685

Query: 530 PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAG 589
            N     Y++ +Q   G       +    I D   T   +       +YRI +    + G
Sbjct: 686 HNAPRFQYRVYWQLDTGVDNWNTED----IFDWQQTELVIRDQPTFQRYRIKVVAINEMG 741

Query: 590 DG--AESKYLFYV----PFKNPDNVEG-RGSTPNNLVISWTAMPEIEHNAPHFK-YRIFW 641
           +   A  + + Y     P + P N    + + P + ++SW  + E +    HFK Y+I  
Sbjct: 742 EANVAPKEVIGYSGEDKPLEAPQNFTLIQVTAPTSAILSWNPVSE-DSVRGHFKGYKI-- 798

Query: 642 RRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGES 701
                 + W                                TE DGE ++RE++V   +S
Sbjct: 799 ------QTW--------------------------------TEADGEENLREVLVT-ADS 819

Query: 702 TTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
               V  F+P S NFAR+LA+NG +NGP S  +SF TPEG
Sbjct: 820 KQALVTDFIPDSTNFARILAYNGRFNGPASTTLSFDTPEG 859

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	745
FB|FBgn0264975	1302	Nrg "Neuroglian" [Drosophila m	0.842	0.482	0.468	2.3e-157
UNIPROTKB|E2RM16	1343	NFASC "Uncharacterized protein	0.516	0.286	0.350	1.9e-79
UNIPROTKB|I3LRR9	1120	NFASC "Uncharacterized protein	0.487	0.324	0.361	5.8e-79
UNIPROTKB|G3MYY6	1345	Bt.110252 "Uncharacterized pro	0.516	0.286	0.353	1e-78
UNIPROTKB|F8W8X7	1224	NFASC "Neurofascin" [Homo sapi	0.516	0.314	0.350	5.5e-78
UNIPROTKB|F1NY17	1168	NFASC "Neurofascin" [Gallus ga	0.510	0.325	0.349	5.6e-78
UNIPROTKB|F8W9B6	1257	NFASC "Neurofascin" [Homo sapi	0.516	0.306	0.350	6.4e-78
UNIPROTKB|F8W792	1268	NFASC "Neurofascin" [Homo sapi	0.516	0.303	0.350	6.8e-78
UNIPROTKB|O94856	1347	NFASC "Neurofascin" [Homo sapi	0.516	0.285	0.350	9.2e-78
UNIPROTKB|J3QSX2	1347	NFASC "Neurofascin" [Homo sapi	0.516	0.285	0.350	9.2e-78

FB|FBgn0264975 Nrg "Neuroglian" [Drosophila melanogaster (taxid:7227)]

 Score = 1364 (485.2 bits), Expect = 2.3e-157, Sum P(2) = 2.3e-157
 Identities = 309/660 (46%), Positives = 397/660 (60%)

Query:     6 RSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQT 65
             RSEYKIGN++LL+V   G+SASQN+H P +QYV+R++ +ALR K++ELFCI+GGTPLPQT
Sbjct:   219 RSEYKIGNKVLLDVKQMGVSASQNKHPPVRQYVSRRQSLALRGKRMELFCIYGGTPLPQT 278

Query:    66 IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
             +WSKDG  I  SDRI+QG+YGKSL+I+   F D G+YTC+VSNGVG A+S+SI L+V + 
Sbjct:   279 VWSKDGQRIQWSDRITQGHYGKSLVIRQTNFDDAGTYTCDVSNGVGNAQSFSIILNVNSV 338

Query:   126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
             PYFT EPE   AAE+E V FEC+A+G+PEP+I W+HNGKPI Q+ PNPRR V  N I I 
Sbjct:   339 PYFTKEPEIATAAEDEEVVFECRAAGVPEPKISWIHNGKPIEQSTPNPRRTVTDNTIRII 398

Query:   186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
             NL K DTGNYGCNATNSLGYVYKDVY+NV A  P I+EAP    TVDG+ V + CRV G+
Sbjct:   399 NLVKGDTGNYGCNATNSLGYVYKDVYLNVQAEPPTISEAPAAVSTVDGRNVTIKCRVNGS 458

Query:   246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             PKP V W+     LTGGRY +   GDL+I DV F+D+G+YTC+A+NK G  Q  GSL VK
Sbjct:   459 PKPLVKWLRASNWLTGGRYNVQANGDLEIQDVTFSDAGKYTCYAQNKFGEIQADGSLVVK 518

Query:   306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
             EHT IT +P++YEV AGQSATFRCN   D +L++ I W +  + IDFE++PRFV++ND S
Sbjct:   519 EHTRITQEPQNYEVAAGQSATFRCNEAHDDTLEIEIDWWKDGQSIDFEAQPRFVKTNDNS 578

Query:   366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ-VPLEAPSNFTLIQVIDAKKAVVSWN 424
             LT+ K+ ELDSG+YTC A+T LD   A+A L VQ VP  AP   T I    A KA + W 
Sbjct:   579 LTIAKTMELDSGEYTCVARTRLDEATARANLIVQDVP-NAPK-LTGI-TCQADKAEIHWE 635

Query:   425 PVSPQSLRGHFRGYKVQ---TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL 481
                    R     Y +Q   ++T    + +  E + N   S   ++  +  A+  F RV+
Sbjct:   636 QQGDN--RSPILHYTIQFNTSFTPASWDAAY-EKVPNTDSSFVVQMSPW--ANYTF-RVI 689

Query:   482 AFNGAYNGPPS-EIISFVTPEGVPGTVQSLEAIPLGSSA--FYLKWVK-PE-QPNGVLMG 536
             AFN     PPS    S  T   VP        +  G+      + W   PE + N     
Sbjct:   690 AFNKIGASPPSAHSDSCTTQPDVPFKNPD-NVVGQGTEPNNLVISWTPMPEIEHNAPNFH 748

Query:   537 YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG--AES 594
             Y   Y S K        E    I D    +  +A      KY I +      G+   A  
Sbjct:   749 Y---YVSWKRDIPAAAWEN-NNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAE 804

Query:   595 KYLFYV----PFKNPDNVEGRGSTPNNL-VISWTAMPEIEHNAPHFK-YRIFWRRHNTGE 648
             + + Y     P   P N   R  T +    ++WT + E E    HFK Y+I     N GE
Sbjct:   805 EVVGYSGEDRPLDAPTNFTMRQITSSTSGYMAWTPVSE-ESVRGHFKGYKIQTWTENEGE 863

GO:0005886 "plasma membrane" evidence=NAS;IDA

GO:0007560 "imaginal disc morphogenesis" evidence=IMP

GO:0007158 "neuron cell-cell adhesion" evidence=ISS;NAS;IMP

GO:0005509 "calcium ion binding" evidence=IDA

GO:0016319 "mushroom body development" evidence=NAS;IMP

GO:0008050 "female courtship behavior" evidence=IMP;TAS

GO:0048036 "central complex development" evidence=IMP;NAS

GO:0045924 "regulation of female receptivity" evidence=IMP;NAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0016328 "lateral plasma membrane" evidence=TAS

GO:0005918 "septate junction" evidence=IDA

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0005919 "pleated septate junction" evidence=IDA

GO:0060857 "establishment of glial blood-brain barrier" evidence=IMP

GO:0050808 "synapse organization" evidence=IMP

GO:0008049 "male courtship behavior" evidence=IMP

GO:0021682 "nerve maturation" evidence=IMP

GO:0008366 "axon ensheathment" evidence=IMP

GO:0048675 "axon extension" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

GO:0030175 "filopodium" evidence=IDA

UNIPROTKB|E2RM16 NFASC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 595 (214.5 bits), Expect = 1.9e-79, Sum P(2) = 1.9e-79
 Identities = 141/402 (35%), Positives = 203/402 (50%)

Query:    13 NRILLNVIAT-GISASQNRHAPKQQYV--TRKKEVALRNKKVELFCIFGGTPLPQTIWSK 69
             N   L V+ T G++       P   Y   T   ++ LR   + L CI  G P P   W K
Sbjct:   227 NAFTLKVLTTRGVA----ERTPSFMYPQGTASSQMVLRGTDLLLECIASGVPTPDIAWYK 282

Query:    70 DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT 129
              G  + PSD+    N+ K+L I +V   D G Y C  SN +G  + ++I + V AAPY+ 
Sbjct:   283 KGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR-HTISVRVKAAPYWL 340

Query:   130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
              EP+ +  A  E     C+A+G P+P + W+ NG+P+  APPNP R+V  + I   + + 
Sbjct:   341 DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI 400

Query:   190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEY--TVDGKTVVLTCRVFGAPK 247
             S    Y CN +N  GY+  + +V+VL   P +  +P+++    +      L C  FG+P 
Sbjct:   401 SSRAVYQCNTSNEHGYLLANAFVSVLDVPPRML-SPRNQLIRVILYNRTRLDCPFFGSPI 459

Query:   248 PEVNWIHNQK--ELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             P + W  N +   L GG Y + E G L+I  +   D G YTC A N LG A+    L VK
Sbjct:   460 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 519

Query:   306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
             + T I   PED   + G +    C    DPSLKL++ WL+  EP+   +    ++  D S
Sbjct:   520 DPTRIYRMPEDQVAKRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNR---MKKEDDS 576

Query:   366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
             LT+   +E D G YTC A TELD   A+A LTV      P+N
Sbjct:   577 LTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTN 618

GO:0071205 "protein localization to juxtaparanode region of axon" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0033270 "paranode region of axon" evidence=IEA

GO:0033010 "paranodal junction" evidence=IEA

GO:0030913 "paranodal junction assembly" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0002175 "protein localization to paranode region of axon" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEA

UNIPROTKB|I3LRR9 NFASC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 592 (213.5 bits), Expect = 5.8e-79, Sum P(2) = 5.8e-79
 Identities = 135/373 (36%), Positives = 193/373 (51%)

Query:    39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSD 98
             T   ++ LR   + L CI  G P P   W K G  + PSD+    N+ K+L I +V   D
Sbjct:    20 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAKLENFNKALRITNVSEED 78

Query:    99 QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIH 158
              G Y C  SN +G  + ++I + V AAPY+  EP+ +  A  E     C+A+G P+P + 
Sbjct:    79 SGEYFCLASNKMGSIR-HTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ 137

Query:   159 WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA 218
             W+ NG+P+  APPNP R+V  + I   + + S    Y CN +N  GY+  + +V+VL   
Sbjct:   138 WMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVP 197

Query:   219 PEITEAPKDEY--TVDGKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYTILETGDLKI 274
             P +  +P+++    +      L C  FG+P P + W  N +   L GG Y + E G L+I
Sbjct:   198 PRML-SPRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEI 256

Query:   275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
               +   D G YTC A N LG A+    L VK+ T I   PED   + G +    C    D
Sbjct:   257 KMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAQRGTTVQLECRVKHD 316

Query:   335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
             PSLKL++ WL+  EP+   +  R  +  D SLT+   +E D G YTC A TELD   A+A
Sbjct:   317 PSLKLTVSWLKDDEPLYIGN--RMKKEED-SLTIFGVAERDQGSYTCVASTELDQDLAKA 373

Query:   395 TLTVQVPLEAPSN 407
              LTV      P+N
Sbjct:   374 YLTVLADQATPTN 386

GO:0071205 "protein localization to juxtaparanode region of axon" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0033270 "paranode region of axon" evidence=IEA

GO:0033010 "paranodal junction" evidence=IEA

GO:0030913 "paranodal junction assembly" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0002175 "protein localization to paranode region of axon" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEA

UNIPROTKB|G3MYY6 Bt.110252 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 594 (214.2 bits), Expect = 1.0e-78, Sum P(2) = 1.0e-78
 Identities = 142/402 (35%), Positives = 203/402 (50%)

Query:    13 NRILLNVIAT-GISASQNRHAPKQQYV--TRKKEVALRNKKVELFCIFGGTPLPQTIWSK 69
             N   L V+ T G++       P   Y   T   ++ LR   + L CI  G P P   W K
Sbjct:   226 NPFTLKVLTTRGVA----ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYK 281

Query:    70 DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT 129
              G  + PSD+    N+ K+L I +V   D G Y C  SN +G  + ++I + V AAPY+ 
Sbjct:   282 KGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR-HTISVRVKAAPYWL 339

Query:   130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
              EP+ +  A  E     C+A+G P+P + W+ NG+P+  APPNP R+V  + I   + + 
Sbjct:   340 DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI 399

Query:   190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEY--TVDGKTVVLTCRVFGAPK 247
             S    Y CN +N  GY+  + +V+VL   P +  +P+++    +      L C  FG+P 
Sbjct:   400 SSRAVYQCNTSNEHGYLLANAFVSVLDVPPRML-SPRNQLIRVILYNRTRLDCPFFGSPI 458

Query:   248 PEVNWIHNQK--ELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             P + W  N +   L GG Y + E G L+I  +   D G YTC A N LG A+    L VK
Sbjct:   459 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 518

Query:   306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
             + T I   PED   + G +    C    DPSLKL++ WL+  EP+   +  R  +  D S
Sbjct:   519 DPTRIYRMPEDQVAKRGTTVQLECRVKHDPSLKLAVSWLKDDEPLYISN--RMKKEED-S 575

Query:   366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
             LT+   +E D G YTC A TELD   A+A LTV      P+N
Sbjct:   576 LTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTN 617

GO:0071205 "protein localization to juxtaparanode region of axon" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0033270 "paranode region of axon" evidence=IEA

GO:0033010 "paranodal junction" evidence=IEA

GO:0030913 "paranodal junction assembly" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0002175 "protein localization to paranode region of axon" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEA

UNIPROTKB|F8W8X7 NFASC "Neurofascin" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 5.5e-78, Sum P(2) = 5.5e-78
 Identities = 141/402 (35%), Positives = 202/402 (50%)

Query:    13 NRILLNVIAT-GISASQNRHAPKQQYV--TRKKEVALRNKKVELFCIFGGTPLPQTIWSK 69
             N   L V+ T G++       P   Y   T   ++ LR   + L CI  G P P   W K
Sbjct:   227 NPFTLKVLTTRGVA----ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYK 282

Query:    70 DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT 129
              G  + PSD+    N+ K+L I +V   D G Y C  SN +G  + ++I + V AAPY+ 
Sbjct:   283 KGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR-HTISVRVKAAPYWL 340

Query:   130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
              EP+ +  A  E     C+A+G P+P + W+ NG+P+  APPNP R+V  + I   + + 
Sbjct:   341 DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI 400

Query:   190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEY--TVDGKTVVLTCRVFGAPK 247
             S    Y CN +N  GY+  + +V+VL   P +  +P+++    +      L C  FG+P 
Sbjct:   401 SSRAVYQCNTSNEHGYLLANAFVSVLDVPPRML-SPRNQLIRVILYNRTRLDCPFFGSPI 459

Query:   248 PEVNWIHNQK--ELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             P + W  N +   L GG Y + E G L+I  +   D G YTC A N LG A+    L VK
Sbjct:   460 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 519

Query:   306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
             + T I   PED     G +    C    DPSLKL++ WL+  EP+   +    ++  D S
Sbjct:   520 DPTRIYRMPEDQVARRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNR---MKKEDDS 576

Query:   366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
             LT+   +E D G YTC A TELD   A+A LTV      P+N
Sbjct:   577 LTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTN 618

GO:0007411 "axon guidance" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

UNIPROTKB|F1NY17 NFASC "Neurofascin" [Gallus gallus (taxid:9031)]

 Score = 585 (211.0 bits), Expect = 5.6e-78, Sum P(2) = 5.6e-78
 Identities = 138/395 (34%), Positives = 204/395 (51%)

Query:    37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEF 96
             Y T   ++ LR   + L CI  G P P  +W K G  + P+ +    N+ K+L I +V  
Sbjct:   260 YGTSSSQMVLRGVDLLLECIASGVPAPDIMWYKKGGEL-PAGKTKLENFNKALRISNVSE 318

Query:    97 SDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPE 156
              D G Y C  SN +G  + ++I + V AAPY+  EP+ +  A  E     C+A+G P+P 
Sbjct:   319 EDSGEYFCLASNKMGSIR-HTISVRVKAAPYWLDEPQNLILAPGEDGRLVCRANGNPKPS 377

Query:   157 IHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
             I W+ NG+PI  +PPNP R+V  + I   + +   +  Y CNA+N  GY+  + +V+VL 
Sbjct:   378 IQWLVNGEPIEGSPPNPSREVAGDTIVFRDTQIGSSAVYQCNASNEHGYLLANAFVSVLD 437

Query:   217 HAPEITEAPKDEY--TVDGKTVVLTCRVFGAPKPEVNWIHNQKE--LTGGRYTILETGDL 272
               P I  AP+++    +      L C  FG+P P + W  N +   L GG Y   E G L
Sbjct:   438 VPPRIL-APRNQLIKVIQYNRTRLDCPFFGSPIPTLRWFKNGQGNMLDGGNYKAHENGSL 496

Query:   273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAV 332
             +++     D G YTC A N LG  +    L VK+ T I   PED  V+ G      C   
Sbjct:   497 EMSMARKEDQGIYTCVATNILGKVEAQVRLEVKDPTRIVRGPEDQVVKRGSMPRLHCRVK 556

Query:   333 SDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA 392
              DP+LKL++ WL+   P+   +    ++  D  LT+   +E D G YTC A TELD   A
Sbjct:   557 HDPTLKLTVTWLKDDAPLYIGNR---MKKEDDGLTIYGVAEKDQGDYTCVASTELDKDSA 613

Query:   393 QATLTVQVPLEAPSNFTLIQVID-AKKAV-VSWNP 425
             +A LTV   LE P     +++ D A+++V ++W P
Sbjct:   614 KAYLTV---LERPDRPRDLELSDLAERSVKLTWIP 645

GO:0007411 "axon guidance" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

UNIPROTKB|F8W9B6 NFASC "Neurofascin" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 6.4e-78, Sum P(2) = 6.4e-78
 Identities = 141/402 (35%), Positives = 202/402 (50%)

Query:    13 NRILLNVIAT-GISASQNRHAPKQQYV--TRKKEVALRNKKVELFCIFGGTPLPQTIWSK 69
             N   L V+ T G++       P   Y   T   ++ LR   + L CI  G P P   W K
Sbjct:   227 NPFTLKVLTTRGVA----ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYK 282

Query:    70 DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT 129
              G  + PSD+    N+ K+L I +V   D G Y C  SN +G  + ++I + V AAPY+ 
Sbjct:   283 KGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR-HTISVRVKAAPYWL 340

Query:   130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
              EP+ +  A  E     C+A+G P+P + W+ NG+P+  APPNP R+V  + I   + + 
Sbjct:   341 DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI 400

Query:   190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEY--TVDGKTVVLTCRVFGAPK 247
             S    Y CN +N  GY+  + +V+VL   P +  +P+++    +      L C  FG+P 
Sbjct:   401 SSRAVYQCNTSNEHGYLLANAFVSVLDVPPRML-SPRNQLIRVILYNRTRLDCPFFGSPI 459

Query:   248 PEVNWIHNQK--ELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             P + W  N +   L GG Y + E G L+I  +   D G YTC A N LG A+    L VK
Sbjct:   460 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 519

Query:   306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
             + T I   PED     G +    C    DPSLKL++ WL+  EP+   +    ++  D S
Sbjct:   520 DPTRIYRMPEDQVARRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNR---MKKEDDS 576

Query:   366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
             LT+   +E D G YTC A TELD   A+A LTV      P+N
Sbjct:   577 LTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTN 618

GO:0007411 "axon guidance" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

UNIPROTKB|F8W792 NFASC "Neurofascin" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 6.8e-78, Sum P(2) = 6.8e-78
 Identities = 141/402 (35%), Positives = 202/402 (50%)

Query:    13 NRILLNVIAT-GISASQNRHAPKQQYV--TRKKEVALRNKKVELFCIFGGTPLPQTIWSK 69
             N   L V+ T G++       P   Y   T   ++ LR   + L CI  G P P   W K
Sbjct:   227 NPFTLKVLTTRGVA----ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYK 282

Query:    70 DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT 129
              G  + PSD+    N+ K+L I +V   D G Y C  SN +G  + ++I + V AAPY+ 
Sbjct:   283 KGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR-HTISVRVKAAPYWL 340

Query:   130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
              EP+ +  A  E     C+A+G P+P + W+ NG+P+  APPNP R+V  + I   + + 
Sbjct:   341 DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI 400

Query:   190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEY--TVDGKTVVLTCRVFGAPK 247
             S    Y CN +N  GY+  + +V+VL   P +  +P+++    +      L C  FG+P 
Sbjct:   401 SSRAVYQCNTSNEHGYLLANAFVSVLDVPPRML-SPRNQLIRVILYNRTRLDCPFFGSPI 459

Query:   248 PEVNWIHNQK--ELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             P + W  N +   L GG Y + E G L+I  +   D G YTC A N LG A+    L VK
Sbjct:   460 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 519

Query:   306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
             + T I   PED     G +    C    DPSLKL++ WL+  EP+   +    ++  D S
Sbjct:   520 DPTRIYRMPEDQVARRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNR---MKKEDDS 576

Query:   366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
             LT+   +E D G YTC A TELD   A+A LTV      P+N
Sbjct:   577 LTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTN 618

GO:0007411 "axon guidance" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

UNIPROTKB|O94856 NFASC "Neurofascin" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 9.2e-78, Sum P(2) = 9.2e-78
 Identities = 141/402 (35%), Positives = 202/402 (50%)

Query:    13 NRILLNVIAT-GISASQNRHAPKQQYV--TRKKEVALRNKKVELFCIFGGTPLPQTIWSK 69
             N   L V+ T G++       P   Y   T   ++ LR   + L CI  G P P   W K
Sbjct:   227 NPFTLKVLTTRGVA----ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYK 282

Query:    70 DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT 129
              G  + PSD+    N+ K+L I +V   D G Y C  SN +G  + ++I + V AAPY+ 
Sbjct:   283 KGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR-HTISVRVKAAPYWL 340

Query:   130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
              EP+ +  A  E     C+A+G P+P + W+ NG+P+  APPNP R+V  + I   + + 
Sbjct:   341 DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI 400

Query:   190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEY--TVDGKTVVLTCRVFGAPK 247
             S    Y CN +N  GY+  + +V+VL   P +  +P+++    +      L C  FG+P 
Sbjct:   401 SSRAVYQCNTSNEHGYLLANAFVSVLDVPPRML-SPRNQLIRVILYNRTRLDCPFFGSPI 459

Query:   248 PEVNWIHNQK--ELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             P + W  N +   L GG Y + E G L+I  +   D G YTC A N LG A+    L VK
Sbjct:   460 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 519

Query:   306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
             + T I   PED     G +    C    DPSLKL++ WL+  EP+   +    ++  D S
Sbjct:   520 DPTRIYRMPEDQVARRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNR---MKKEDDS 576

Query:   366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
             LT+   +E D G YTC A TELD   A+A LTV      P+N
Sbjct:   577 LTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTN 618

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0002175 "protein localization to paranode region of axon" evidence=IEA

GO:0030913 "paranodal junction assembly" evidence=IEA

GO:0033010 "paranodal junction" evidence=IEA

GO:0033270 "paranode region of axon" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0071205 "protein localization to juxtaparanode region of axon" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005622 "intracellular" evidence=ISS

GO:0043194 "axon initial segment" evidence=ISS

GO:0033268 "node of Ranvier" evidence=ISS;TAS

GO:0042552 "myelination" evidence=ISS

GO:0007422 "peripheral nervous system development" evidence=ISS

UNIPROTKB|J3QSX2 NFASC "Neurofascin" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 9.2e-78, Sum P(2) = 9.2e-78
 Identities = 141/402 (35%), Positives = 202/402 (50%)

Query:    13 NRILLNVIAT-GISASQNRHAPKQQYV--TRKKEVALRNKKVELFCIFGGTPLPQTIWSK 69
             N   L V+ T G++       P   Y   T   ++ LR   + L CI  G P P   W K
Sbjct:   227 NPFTLKVLTTRGVA----ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYK 282

Query:    70 DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT 129
              G  + PSD+    N+ K+L I +V   D G Y C  SN +G  + ++I + V AAPY+ 
Sbjct:   283 KGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR-HTISVRVKAAPYWL 340

Query:   130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
              EP+ +  A  E     C+A+G P+P + W+ NG+P+  APPNP R+V  + I   + + 
Sbjct:   341 DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI 400

Query:   190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEY--TVDGKTVVLTCRVFGAPK 247
             S    Y CN +N  GY+  + +V+VL   P +  +P+++    +      L C  FG+P 
Sbjct:   401 SSRAVYQCNTSNEHGYLLANAFVSVLDVPPRML-SPRNQLIRVILYNRTRLDCPFFGSPI 459

Query:   248 PEVNWIHNQK--ELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             P + W  N +   L GG Y + E G L+I  +   D G YTC A N LG A+    L VK
Sbjct:   460 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 519

Query:   306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
             + T I   PED     G +    C    DPSLKL++ WL+  EP+   +    ++  D S
Sbjct:   520 DPTRIYRMPEDQVARRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNR---MKKEDDS 576

Query:   366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
             LT+   +E D G YTC A TELD   A+A LTV      P+N
Sbjct:   577 LTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTN 618

GO:0007411 "axon guidance" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P20241	NRG_DROME	No assigned EC number	0.5428	0.6429	0.3678	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	745
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	4e-21
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	7e-19
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-17
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-17
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-15
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-15
smart00409	85	smart00409, IG, Immunoglobulin	2e-15
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	9e-15
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	1e-14
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	4e-14
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-13
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-13
smart00409	85	smart00409, IG, Immunoglobulin	2e-13
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	4e-13
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-12
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	8e-12
cd00096	74	cd00096, Ig, Immunoglobulin domain	9e-12
cd00096	74	cd00096, Ig, Immunoglobulin domain	9e-12
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-11
cd04970	85	cd04970, Ig6_Contactin_like, Sixth Ig domain of co	5e-11
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	7e-11
smart00410	85	smart00410, IG_like, Immunoglobulin like	9e-11
smart00409	85	smart00409, IG, Immunoglobulin	9e-11
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	1e-10
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	1e-10
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	2e-10
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-10
smart00409	85	smart00409, IG, Immunoglobulin	4e-10
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	5e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	8e-10
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-09
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	1e-09
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	1e-09
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	1e-09
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	1e-09
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-09
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	3e-09
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	3e-09
cd05858	90	cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik	3e-09
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	8e-09
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	8e-09
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	1e-08
pfam00047	62	pfam00047, ig, Immunoglobulin domain	1e-08
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-08
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-08
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-08
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-08
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	3e-08
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-08
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	3e-08
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	5e-08
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	6e-08
cd05854	85	cd05854, Ig6_Contactin-2, Sixth Ig domain of conta	6e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	8e-08
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	9e-08
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	1e-07
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	1e-07
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	2e-07
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-07
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-07
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	2e-07
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	2e-07
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-07
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	3e-07
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	3e-07
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	3e-07
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	4e-07
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	4e-07
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	6e-07
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	6e-07
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	9e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-06
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	1e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	1e-06
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	1e-06
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	1e-06
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	1e-06
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	1e-06
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	2e-06
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-06
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	2e-06
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	2e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	3e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	4e-06
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	5e-06
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	6e-06
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	8e-06
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	1e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	1e-05
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	1e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	1e-05
cd04974	90	cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like	1e-05
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	1e-05
cd05740	91	cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-	1e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	2e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	2e-05
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	2e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-05
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	2e-05
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	2e-05
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	3e-05
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	3e-05
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-05
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	3e-05
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	3e-05
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	4e-05
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	4e-05
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	4e-05
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	4e-05
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	4e-05
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	5e-05
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	6e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	6e-05
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	7e-05
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	8e-05
PHA02785	326	PHA02785, PHA02785, IL-beta-binding protein; Provi	8e-05
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	8e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	8e-05
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	9e-05
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	9e-05
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	9e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	1e-04
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	1e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-04
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	1e-04
cd05749	81	cd05749, Ig2_Tyro3_like, Second immunoglobulin (Ig	1e-04
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	1e-04
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	2e-04
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	2e-04
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	2e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	3e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	3e-04
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	3e-04
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	3e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	4e-04
cd05858	90	cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik	4e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	4e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	4e-04
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	4e-04
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	4e-04
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	5e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	5e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	5e-04
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	5e-04
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	5e-04
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	6e-04
cd05758	98	cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I	6e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	7e-04
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	7e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	7e-04
cd05757	92	cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)	8e-04
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	8e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.001
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	0.001
cd05740	91	cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-	0.001
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	0.001
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	0.001
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	0.001
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	0.001
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	0.001
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	0.001
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	0.001
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.002
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	0.002
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	0.002
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	0.003
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	0.003
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	0.003
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	0.003
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	0.003
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.004
cd04974	90	cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like	0.004
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	0.004
pfam07686	114	pfam07686, V-set, Immunoglobulin V-set domain	0.004
pfam07686	114	pfam07686, V-set, Immunoglobulin V-set domain	0.004
cd05853	85	cd05853, Ig6_Contactin-4, Sixth Ig domain of conta	0.004

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 87.5 bits (217), Expect = 4e-21
 Identities = 31/76 (40%), Positives = 49/76 (64%)

Query: 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNA 199
            ET   +C+A G+P+P I W  NG PI + PP+PRR+V    + + N++ +DT  Y CNA
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 200 TNSLGYVYKDVYVNVL 215
           +N  GY+  + +V+V+
Sbjct: 61  SNVHGYLLANAFVHVV 76

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 81.5 bits (202), Expect = 7e-19
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKI 274
           P+ T+ PKD    +G++   TC V G P P V+W  + + L    R+ +   G    L I
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
           ++V   D G+YTC A N  G A+ S  LTV
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GPNR 181
           P FT +P+ +   E E+  F C  +G P+P + W  +G+P+     + R KV    G   
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPL---RSSDRFKVTYEGGTYT 57

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           +TI N++  D G Y C ATNS G       + V
Sbjct: 58  LTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 75.9 bits (187), Expect = 3e-17
 Identities = 23/62 (37%), Positives = 30/62 (48%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
           G++V LTC   G P P + W+ + K L      +     L I  V+  DSG YTC A N 
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAENS 61

Query: 293 LG 294
            G
Sbjct: 62  AG 63

Length = 63

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCN 198
           E ++VT  C A G P P I W+ +GKP+   P + R     + +TI+++   D+G Y C 
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPL---PESNRFVASGSTLTIKSVSLEDSGLYTCV 57

Query: 199 ATNSLG 204
           A NS G
Sbjct: 58  AENSAG 63

Length = 63

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGD---LKITDVAF 279
           P      +G++V L+C   G+P PEV W     +L    GR+++  +G    L I++V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 280 ADSGEYTCFARNKLGTAQGSGSLTV 304
            DSG YTC A N  G+A    +LTV
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGD---LKITDVAF 279
           P      +G++V L+C   G+P PEV W     +L    GR+++  +G    L I++V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 280 ADSGEYTCFARNKLGTAQGSGSLTV 304
            DSG YTC A N  G+A    +LTV
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 69.0 bits (169), Expect = 9e-15
 Identities = 31/69 (44%), Positives = 35/69 (50%)

Query: 236 VVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGT 295
           V   C V G P P V W     EL  GR  IL+   LKI +V   D G YTC A N +G 
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60

Query: 296 AQGSGSLTV 304
            + S SLTV
Sbjct: 61  IEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 68.9 bits (168), Expect = 1e-14
 Identities = 31/75 (41%), Positives = 45/75 (60%)

Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
           E  T  C+A+G P+P I W+ NG PI  AP +P RKV  + I    +++  +  Y CNA+
Sbjct: 2   EDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNAS 61

Query: 201 NSLGYVYKDVYVNVL 215
           N  GY+  + +VNVL
Sbjct: 62  NEYGYLLANAFVNVL 76

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGDLKITDVAFADSGEYTCFARN 291
           G  V++ C+   APKP ++W    + LT   R  I   G L+I +V  +D G+YTCFA N
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60

Query: 292 KLGTAQGSGSLTV 304
             G A  +GSL+V
Sbjct: 61  FFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRI----SQGNYGKSLIIKHVEFSDQGSYTCEV 106
               C   G P P   W KDG P+  SDR       G Y  +L I +V+  D+G YTC  
Sbjct: 18  ARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTY--TLTISNVQPDDEGKYTCVA 75

Query: 107 SNGVGEAKSYSIDLSV 122
           +N  GEA++ S +L+V
Sbjct: 76  TNSAGEAEA-SAELTV 90

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--ITIENLRK 189
           P  +   E E+VT  C+ASG P PE+ W   G  +             +   +TI N+  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 190 SDTGNYGCNATNSLGYVYKDVYVNV 214
            D+G Y C ATNS G       + V
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--ITIENLRK 189
           P  +   E E+VT  C+ASG P PE+ W   G  +             +   +TI N+  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 190 SDTGNYGCNATNSLGYVYKDVYVNV 214
            D+G Y C ATNS G       + V
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 64.5 bits (157), Expect = 4e-13
 Identities = 27/75 (36%), Positives = 41/75 (54%)

Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
           ET   +C+  G+P P I W  NG PI    P+PRR V    + + +++ SDT  Y C A 
Sbjct: 2   ETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEAR 61

Query: 201 NSLGYVYKDVYVNVL 215
           N  G +  + +V+V+
Sbjct: 62  NRHGNLLANAHVHVV 76

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
             T +P+D EV+ G+SA F C    DP    ++ W +  +P+   S  RF  + +   Y+
Sbjct: 2   KFTQKPKDVEVQEGESARFTCTVTGDP--DPTVSWFKDGQPL--RSSDRFKVTYEGGTYT 57

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
           LT++     D G+YTC A       EA A LTV
Sbjct: 58  LTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 61.3 bits (149), Expect = 8e-12
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 130 VEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
           VEP     A  E    EC    G PEP + W  +G+P++       R V    + I   R
Sbjct: 1   VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNE-RVRIVDDGNLLIAEAR 59

Query: 189 KSDTGNYGCNATNSLG 204
           KSD G Y C ATN +G
Sbjct: 60  KSDEGTYKCVATNMVG 75

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 61.0 bits (147), Expect = 9e-12
 Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-----RITIENLRKSDTGNYGC 197
           VT  C ASG P P I W+ NGKP+  +     R           +TI N+   D+G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 198 NATNSLGYVYKDVY 211
            A+NS G V   V 
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 61.0 bits (147), Expect = 9e-12
 Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 236 VVLTCRVFGAPKPEVNWIHNQKELT--------GGRYTILETGDLKITDVAFADSGEYTC 287
           V LTC   G P P + W+ N K L           R T   +  L I++V   DSG YTC
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 288 FARNKLGTAQGS 299
            A N  GT   S
Sbjct: 61  VASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
           V L C   G P+P   W KDG P+  S+R        +L IK V   D G YTC   N  
Sbjct: 5   VTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG--STLTIKSVSLEDSGLYTCVAENSA 62

Query: 111 G 111
           G
Sbjct: 63  G 63

Length = 63

>gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 323 QSATFRCNAVSDPSLKLSIVWLRGSEPIDFES-----EPRFVQSNDYSLTVTKSSELDSG 377
           +S T +C+A  DP+L L+  W     PIDF+           + ++  L +  +    +G
Sbjct: 1   ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAG 60

Query: 378 QYTCRAQTELDFIEAQATLTVQVP 401
           +YTC AQT +D + A A L V+ P
Sbjct: 61  KYTCTAQTVVDSLSASADLIVRGP 84

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neur onal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 85

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 58.1 bits (141), Expect = 7e-11
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 236 VVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-LKITDVAFADSGEYTCFARNKLG 294
           ++L C   G P PE++WI    EL   R         LKI +V+  D GEY C A N LG
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60

Query: 295 TAQGSGSLTVK 305
           +A+ + S+TV+
Sbjct: 61  SARHTISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 58.3 bits (141), Expect = 9e-11
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDG-VPINPSDR--ISQGNYGKSLIIKHVEFSDQG 100
                + V L C   G+P P+  W K G   +  S R  +S+     +L I +V   D G
Sbjct: 5   TVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSG 64

Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
           +YTC  +N  G A S    L+V
Sbjct: 65  TYTCAATNSSGSASS-GTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 58.3 bits (141), Expect = 9e-11
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDG-VPINPSDR--ISQGNYGKSLIIKHVEFSDQG 100
                + V L C   G+P P+  W K G   +  S R  +S+     +L I +V   D G
Sbjct: 5   TVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSG 64

Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
           +YTC  +N  G A S    L+V
Sbjct: 65  TYTCAATNSSGSASS-GTTLTV 85

Length = 85

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
           P    +L    + S++  L W  PE   G + GY ++Y+         +          +
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVT-----PGS 55

Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
            TS  L GL+P T+Y   +      G+   S
Sbjct: 56  ETSYTLTGLKPGTEYEFRVRAVNGGGESPPS 86

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 48  NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG---NYGKSLIIKHVEFSDQGSYTC 104
              V L C   G P P   W KDG P     RI          +LI++ V  SD G YTC
Sbjct: 9   GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTC 68

Query: 105 EVSNGVGE 112
            V N  G 
Sbjct: 69  IVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTI-LETGD---LKITDVAFADSGEYT 286
           +GKT+ LTC VFG P PEV+W+ N + L     Y + +E G    L I  V+  DSG+Y 
Sbjct: 15  EGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYG 74

Query: 287 CFARNKLGTAQGSGSLTV 304
              +NK G      +++V
Sbjct: 75  IVVKNKYGGETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 56.4 bits (136), Expect = 4e-10
 Identities = 22/85 (25%), Positives = 34/85 (40%)

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSE 373
           P    V+ G+S T  C A   P  +++     G    +          +  +LT++  + 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 374 LDSGQYTCRAQTELDFIEAQATLTV 398
            DSG YTC A        +  TLTV
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 56.4 bits (136), Expect = 4e-10
 Identities = 22/85 (25%), Positives = 34/85 (40%)

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSE 373
           P    V+ G+S T  C A   P  +++     G    +          +  +LT++  + 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 374 LDSGQYTCRAQTELDFIEAQATLTV 398
            DSG YTC A        +  TLTV
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 56.5 bits (136), Expect = 5e-10
 Identities = 28/80 (35%), Positives = 39/80 (48%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
             D     G ++   C+  G P+P   W+ N + L       +E GDL+IT ++ +DSG 
Sbjct: 6   ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGM 65

Query: 285 YTCFARNKLGTAQGSGSLTV 304
           Y C A NK GT   S  L V
Sbjct: 66  YQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 55.6 bits (133), Expect = 8e-10
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGN------YGKSLIIKHVEFSDQGSYTC 104
           V L C+  G P P   W K+G P+  S      +         +L I +V   D G+YTC
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 105 EVSNGVGEAKS 115
             SN  G   +
Sbjct: 61  VASNSAGTVSA 71

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT--IENLRKSDTGNYGCNAT 200
           +  EC A GLP PEI W+     I    P  R K      T  I+N+ + D G Y C A+
Sbjct: 1   LLLECIAEGLPTPEISWI----KIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTAS 56

Query: 201 NSLGYVYKDVYVNV 214
           NSLG     + V V
Sbjct: 57  NSLGSARHTISVTV 70

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAFADSGEYTCFARN 291
           G  V++ C+   APKP+ +W    + L    R +I + G L+I ++   D G YTCFA N
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60

Query: 292 KLGTAQGSGSLTV 304
             G A  +G L+V
Sbjct: 61  NRGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GPNRITIENLRKSDTGNYG 196
           ETV F C A+G+P P I+W  N   +   P + R  +    G   +TI ++++SD G Y 
Sbjct: 2   ETVEFTCVATGVPTPIINWRLNWGHV---PDSARVSITSEGGYGTLTIRDVKESDQGAYT 58

Query: 197 CNATNSLGYVY 207
           C A N+ G V+
Sbjct: 59  CEAINTRGMVF 69

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 231 VDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTI-LETG---DLKITDVAFADSGEY 285
           ++GKT+ LTC VFG P PEV W  N +++     Y++ LE G    L I  V   DSG+Y
Sbjct: 14  MEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKY 73

Query: 286 TCFARNKLG 294
           +   +NK G
Sbjct: 74  SINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 507 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS 566
             +L    + S++  L W  P   NG + GY+++Y+ V G +     E        TTTS
Sbjct: 3   PTNLTVTDVTSTSLTLSWSPPP-GNGPITGYEVEYRPVNGGE-----EWKEITVPGTTTS 56

Query: 567 AKLAGLEPSTKYRIHLAGYTKAGDGAES 594
             L GL+P T+Y + +     AG+G  S
Sbjct: 57  YTLTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
           V L C   G P P   W KDGVP++ S               +V   D G+YTC  SNG 
Sbjct: 17  VTLTCSAPGNPPPNYTWYKDGVPLSSSQNGF--------FTPNVSAEDSGTYTCVASNGG 68

Query: 111 GEAKSYSIDLSV 122
           G   S  + L+V
Sbjct: 69  GGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
           + L CI  G P P+  W K G  + P+DR    N+ K+L I +V   D G Y C  SN +
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGEL-PADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSL 59

Query: 111 GEAK 114
           G A+
Sbjct: 60  GSAR 63

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-----ITIENLRKSDTGNYG 196
           TV  +C ASG P P I W+ +GKP  +     R      R     + +E++  SD+G Y 
Sbjct: 11  TVRLKCPASGNPRPTITWLKDGKPFKK---EHRIGGYKVRKKKWTLILESVVPSDSGKYT 67

Query: 197 CNATNSLG 204
           C   N  G
Sbjct: 68  CIVENKYG 75

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

 Score = 54.2 bits (130), Expect = 3e-09
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 21/91 (23%)

Query: 233 GKTVVLTCRVFGAPKPEVNWI-HNQKELTGGRY--------TILETGDLKITD------- 276
           G TV   C+V+   +P + W+ H   E  G +Y        T+L+T  +  TD       
Sbjct: 1   GSTVEFVCKVYSDAQPHIQWLKHV--EKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLY 58

Query: 277 ---VAFADSGEYTCFARNKLGTAQGSGSLTV 304
              V F D+GEYTC A N +G +  S  LTV
Sbjct: 59  LRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 52.6 bits (126), Expect = 8e-09
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGDLKITDVAFADSGEYTCFAR 290
           +G+TV   C   G P+P + W     +L+   R+ +L +G L+I+ VA  D G+Y C A 
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAV 60

Query: 291 NKLGTAQGSGSLTV 304
           N +G+ +    LTV
Sbjct: 61  NIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 52.6 bits (126), Expect = 8e-09
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 238 LTCRVFGAPKPEVNWIHNQKELT---GGRYTILETG-DLKITDVAFADSGEYTCFARNKL 293
           L C   G P P + W+ N  ++T     + T++  G +L I++V + D+G YTC A+N+ 
Sbjct: 3   LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEA 62

Query: 294 GTAQGSGSLTVKE 306
           G  +   SL V++
Sbjct: 63  GVDEDISSLFVED 75

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 236 VVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
           V + C   G P+P + W  +  ++T  G++ I   G L I DV  AD G Y C ARN +G
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60

Query: 295 TAQGSGSLT 303
            A  S  L+
Sbjct: 61  YASVSMVLS 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG-----DLKITDVAFADSGEYTC 287
           G +V LTC V G P+ +V W    K L        +        L I++V   DSG YTC
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 288 FA 289
             
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 225 PKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKEL--TGGRYTILETGDLKITDVAFAD 281
           P D     G+  VL C    G P+P V+W  + + L     R  I++ G+L I +   +D
Sbjct: 3   PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSD 62

Query: 282 SGEYTCFARNKLGT 295
            G Y C A N +G 
Sbjct: 63  EGTYKCVATNMVGE 76

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
            + P      E E VT  C A G P P   W  +G P+S            N     N+ 
Sbjct: 3   VLTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSS---------SQNGFFTPNVS 53

Query: 189 KSDTGNYGCNATNS-LGYVYKDVYVNV 214
             D+G Y C A+N   G     V + V
Sbjct: 54  AEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 53  LFCIFGGTPLPQTIWSKDGVPINP--SDRIS-QGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
           L C   G PLP+  W K+G+ I P  S +++   N G  L I +V + D G+YTC   N 
Sbjct: 3   LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIAN-GSELHISNVRYEDTGAYTCIAKNE 61

Query: 110 VG 111
            G
Sbjct: 62  AG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 50  KVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCEVS 107
            V L     G P P   WSKDG P+  S R  I       SL+IK+ E SD G YT  + 
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK 60

Query: 108 NGVGEAKS 115
           N  GE  +
Sbjct: 61  NPAGEKSA 68

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 59  GTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYS 117
           G P P   W KDG P+N  + R+   + G  L+I     SD+G+Y C  +N VGE +S +
Sbjct: 23  GHPEPTVSWRKDGQPLNLDNERVRIVDDGN-LLIAEARKSDEGTYKCVATNMVGERESAA 81

Query: 118 IDLSV 122
             LSV
Sbjct: 82  ARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATN 201
           +  EC A GLP PE+HW    +      PN  +K+  N+ + ++N+ +SD G Y C A N
Sbjct: 1   LVLECIAEGLPTPEVHWD---RIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAEN 57

Query: 202 SLGYVYKDVYVNV 214
           S G       V V
Sbjct: 58  SEGSARHHYTVTV 70

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
           P    +L    + S++  L W  P        GY + Y+     +     E       P+
Sbjct: 1   PSPPSNLRVTDVTSTSVTLSWEPPPDDGIT--GYIVGYRVEYREEGSEWKE---VNVTPS 55

Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
           +TS  L GL+P T+Y   +     AG+G
Sbjct: 56  STSYTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGES 462
             P+N   +  + +    +SW P  P+   G   GY V+    + G G  +E+ V  G  
Sbjct: 2   SPPTNLR-VTDVTSTSVTLSWTP--PEDDGGPITGYVVEYR--EKGSGDWKEVEVTPGSE 56

Query: 463 TTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
           T+  +    P ++   RV A NG    PPSE ++  T
Sbjct: 57  TSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP--ISQAPPNPRRKVGPN-- 180
            P     P  +  ++ +  T  CKA G P P I W+ NG+P    +  P   R V P+  
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 181 ----RITIENLRKSDTGNYGCNATNSLG 204
               R+      +SD G Y C A NSLG
Sbjct: 61  LFFLRVVHGRKGRSDEGVYVCVAHNSLG 88

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143262 cd05854, Ig6_Contactin-2, Sixth Ig domain of contactin-2

 Score = 50.4 bits (120), Expect = 6e-08
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 323 QSATFRCNAVSDPSLKLSIVWLRGSEPIDFE-SEPRFVQSNDYS----LTVTKSSELDSG 377
           ++ T +C+A  DP++ L+  W     PID +     + +         L +  +    +G
Sbjct: 1   ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAG 60

Query: 378 QYTCRAQTELDFIEAQATLTVQVP 401
            YTC AQT +D   A ATL V+ P
Sbjct: 61  TYTCTAQTVVDSASASATLVVRGP 84

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC proce sses. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 49.8 bits (118), Expect = 8e-08
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ-----SNDYSLTVTKSSELDSGQY 379
            T  C A   P    +I WL+  +P+      R        S   +LT++  +  DSG Y
Sbjct: 1   VTLTCLASGPPPP--TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58

Query: 380 TCRAQTELDFIEAQAT 395
           TC A      + A  T
Sbjct: 59  TCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
           VE  C  GG P+P  +W K+   + P  R    +  KSL I++V   D+GSYTCE  N V
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGEL-PKGRAEILD-DKSLKIRNVTAGDEGSYTCEAENMV 58

Query: 111 GEA 113
           G+ 
Sbjct: 59  GKI 61

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
           ++VT  C A G PEP + W  +G+PI             + +TI ++ K D   Y C A 
Sbjct: 19  QSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAE 78

Query: 201 NSLGYVYKDVYVNVLA 216
           N  G    ++++ V A
Sbjct: 79  NKAGEQEAEIHLKVFA 94

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGG--RYTILETGDLKITDVAFADSGEYTCFAR 290
           G+   L C+  G P+P ++WI    +L     R  + + G L I      D+G +TC A 
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60

Query: 291 NKLGTAQGSGSLTV 304
           N  G A  +  L +
Sbjct: 61  NAAGEATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGEST 463
           AP+N T+   + +    +SW+P       G   GY+V+     +G    +E+ V  G +T
Sbjct: 2   APTNLTVT-DVTSTSLTLSWSPPPGN---GPITGYEVEYR-PVNGGEEWKEITV-PGTTT 55

Query: 464 TTEVDKFVPASKNFARVLAFNGAYNGPPS 492
           +  +    P ++   RV A NGA  GPPS
Sbjct: 56  SYTLTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL------TGGRYTILETGD 271
            P I E P D     G    L C+  G P P + W+ N + L            +L +G 
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 272 LKITDVAF-----ADSGEYTCFARNKLGTA 296
           L    V       +D G Y C A N LG A
Sbjct: 61  LFFLRVVHGRKGRSDEGVYVCVAHNSLGEA 90

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 48  NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEV 106
              V L C+  G P P   W KD  P+ P   I +    K +L +K+++  D G YTC V
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTP-TEIGESRKKKWTLSLKNLKPEDSGKYTCHV 67

Query: 107 SNGVGEAK-SYSIDL 120
           SN  GE   +Y +D+
Sbjct: 68  SNRAGEINATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL 203
           T  C ASG P+PEI W  +  P+        +++    + IEN  +SD G Y C ATNS 
Sbjct: 2   TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSA 61

Query: 204 GYVYK---DVYV 212
           G  Y    ++YV
Sbjct: 62  GTRYSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 236 VVLTCRVFGAPKPEVNWIHNQKELTGGRY-TILETGDLKITDVAFADSGEYTCFARNKLG 294
           +V  C V G P P V W+ N   +    Y  I++  +L++  +  +D G Y C A N +G
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Query: 295 TAQGSGSLTV 304
             Q    L +
Sbjct: 62  NVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 236 VVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-LKITDVAFADSGEYTCFARNKLG 294
           +VL C   G P PEV+W      L+  R   L     L++ +V  +D GEY C A N  G
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60

Query: 295 TAQGSGSLTVK 305
           +A+   ++TV+
Sbjct: 61  SARHHYTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 9/68 (13%)

Query: 141 ETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPN---RITIENLRKSDTGNYG 196
           +  T  CKA G PEP IHW+  +GK IS    + R  V  N    I I  ++  DTG++ 
Sbjct: 2   QRATLRCKARGDPEPAIHWISPDGKLISN---SSRTLVYDNGTLDILITTVK--DTGSFT 56

Query: 197 CNATNSLG 204
           C A+N+ G
Sbjct: 57  CIASNAAG 64

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 48.1 bits (114), Expect = 3e-07
 Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAP-KPEVNWIHNQKELTGGRYTILETGDLKITD 276
            P IT          G  V LTC   G P  P ++W  N     G          L ++ 
Sbjct: 1   KPVIT-VSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSS 59

Query: 277 VAFADSGEYTCFARN 291
           V   DSG YTC A N
Sbjct: 60  VTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 25/80 (31%), Positives = 34/80 (42%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
           PKD Y + G+ V L C   G P P++ W      +       +    LKI ++ F D G 
Sbjct: 8   PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGT 67

Query: 285 YTCFARNKLGTAQGSGSLTV 304
           Y C A N  G     G + V
Sbjct: 68  YECEAENIKGKDTHQGRIYV 87

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGG--RYTILETG-DLKITDVAFADSGEYTCFA 289
           G++V L C   G P+P + W  + + +  G  +Y+  E G ++ I DV   D  EYTC A
Sbjct: 18  GQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIA 77

Query: 290 RNKLGTAQGSGSLTV 304
            NK G  +    L V
Sbjct: 78  ENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 53  LFCIFGGTPLPQTIWSKDGVPI--NPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
           + C   G P P+  W KD +P+    + RI Q   G +L I++ E SDQG Y C  +N  
Sbjct: 3   MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG-ALQIENSEESDQGKYECVATNSA 61

Query: 111 GEAKSYSIDLSV 122
           G   S   +L V
Sbjct: 62  GTRYSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 137 AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP------RRKVGPNRITIENLRKS 190
           A E E +T  C+A G P PEI W    +  S+   +       R     + +T+++++ +
Sbjct: 13  AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLT 72

Query: 191 DTGNYGCNATNSLGYVYKDVYVNV 214
           D G Y C A+N +G   + +Y+ V
Sbjct: 73  DAGRYDCEASNRIGGDQQSMYLEV 96

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 35  QQYVTR-KKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPI-----NPSDRIS-QGNY 85
           Q ++ + K E  + N    L C   G P+P+  W +  DG        +P  RI  +G +
Sbjct: 2   QPHIIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH 61

Query: 86  GKS-LIIKHVEFSDQGSYTCEVSNGV-GEAKSYSIDL 120
           G+S L IK V+ SD G Y CE ++ + G  KS  +D+
Sbjct: 62  GESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204
           +ECKASG P P   W+ NG+P+       R +V    + I  L  SD+G Y C A N  G
Sbjct: 19  WECKASGNPRPAYRWLKNGQPL---ASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHG 75

Query: 205 YVY 207
            +Y
Sbjct: 76  TIY 78

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTC 381
           GQS T  C A  +P    +I WL+  +P+   +  RFV S    LT+   S  DSG YTC
Sbjct: 2   GQSVTLTCPAEGNPVP--NITWLKDGKPLPESN--RFVASGST-LTIKSVSLEDSGLYTC 56

Query: 382 RAQ 384
            A+
Sbjct: 57  VAE 59

Length = 63

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSYTCEVSN 108
           VE  C+  G P P   W  +   +  S R+S  + G   +L I+ V+ SDQG+YTCE  N
Sbjct: 4   VEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAIN 63

Query: 109 GVG 111
             G
Sbjct: 64  TRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKS-LIIKHVEFSDQGSYTCEVSNG 109
           V L C   G P P   W+KDG PI   +     N   S + I  V+  D+  YTC   N 
Sbjct: 21  VTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK 80

Query: 110 VGEAKSYSIDLSVLA 124
            GE ++  I L V A
Sbjct: 81  AGEQEA-EIHLKVFA 94

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYT----ILETGD--- 271
           P+IT   +++  V+ + + LTC   G P PE+ W    +  + G  +    I+  G    
Sbjct: 3   PKITYL-ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARV 61

Query: 272 --LKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
             L + DV   D+G Y C A N++G  Q S  L V
Sbjct: 62  SSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 142 TVTFECKASGLPEPEIHWVHNGKPI----SQAP-PNPRRKVGPN-RITIENLRKSDTGNY 195
           TVTF+C+A+G P+P I W   G        Q P  + R  V     +TI N+++SD G Y
Sbjct: 3   TVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYY 62

Query: 196 GCNATNSLGYVYKDVYVNV 214
            C   N  G +    Y+ V
Sbjct: 63  ICQTLNVAGSILTKAYLEV 81

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 15/93 (16%)

Query: 233 GKTVVLTCRVFGAPKPEVNW---------IHNQKELTGGRYTILETGDLKITDVAFADSG 283
           G+TV   C   G P+P + W            Q   +  R+++ +TGDL IT+V  +D G
Sbjct: 1   GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60

Query: 284 EYTCFARNKLGTAQGSGSLTVKEHTHITDQPED 316
            Y C   N       +GS+  K +  +TD   D
Sbjct: 61  YYICQTLNV------AGSILTKAYLEVTDVIAD 87

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 49  KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY-----GKSLIIKHVEFSDQGSYT 103
             V+  C   G P P   W K+G       RI  G Y       SLI++ V  SD+G+YT
Sbjct: 10  NTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRI--GGYKVRNQHWSLIMESVVPSDKGNYT 67

Query: 104 CEVSNGVGEAK-SYSIDL 120
           C V N  G    +Y +D+
Sbjct: 68  CVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTILETGDLKITDVAFADSGEYTC 287
           G TV L C   G P+P + W+ + K        GG     +   L +  V  +DSG+YTC
Sbjct: 9   GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTC 68

Query: 288 FARNKLGT 295
              NK G+
Sbjct: 69  IVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GPNRITIENLRKSDTGN 194
           E +TV F C+A G P+P I W   G  +S      RR +    G  RI+   L   D G 
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLSV----DRRHLVLSSGTLRISRVALH--DQGQ 54

Query: 195 YGCNATNSLGYVYKDVYVNV 214
           Y C A N +G       + V
Sbjct: 55  YECQAVNIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 142 TVTFECKASGLPEPEIHWVHNGKPI-SQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
           +V  +C ASG P P+I W+ + KP+        R+K     ++++NL+  D+G Y C+ +
Sbjct: 11  SVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWT--LSLKNLKPEDSGKYTCHVS 68

Query: 201 NSLGYVYKDVYVNV 214
           N  G +     V+V
Sbjct: 69  NRAGEINATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGN------YG 86
           PK  Y+  + + A+  +++ L C   G P+P+  W +     +  D+   G         
Sbjct: 3   PKITYL--ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHAR 60

Query: 87  KS-LIIKHVEFSDQGSYTCEVSNGVG 111
            S L +K V+ +D G Y CE SN +G
Sbjct: 61  VSSLTLKDVQLTDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 15/84 (17%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE------------TGDLKITDVAFA 280
           G+T    C V G P PE+ W   +K++ G    I+              G L I +    
Sbjct: 1   GETASFHCDVTGRPPPEITW---EKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQ 57

Query: 281 DSGEYTCFARNKLGTAQGSGSLTV 304
           D+G YTC ARN  G  + +  L+V
Sbjct: 58  DAGLYTCTARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 325 ATFRCNAVSDPSLKLSIVWLR--GSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCR 382
             F+C    DP     ++W +  G  P       R    +D SL +   +  D G YTC 
Sbjct: 1   VEFQCEVGGDPVPT--VLWRKEDGELPKG-----RAEILDDKSLKIRNVTAGDEGSYTCE 53

Query: 383 AQTELDFIEAQATLTV 398
           A+  +  IEA A+LTV
Sbjct: 54  AENMVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 130 VEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPNRITIENLR 188
           V P+   A + + VT EC A G P P+I W   +G   S A        G   + I N++
Sbjct: 6   VFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSA---EISMSGA-VLKIPNIQ 61

Query: 189 KSDTGNYGCNATNSLG 204
             D G Y C A N  G
Sbjct: 62  FEDEGTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS 202
           + FEC+ +G P P + WV NG  +   P +  + V  + + +  L KSD G Y C A N 
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMV--IPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAEND 59

Query: 203 LGYV 206
           +G V
Sbjct: 60  VGNV 63

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--ITIENLRKSDTGNYGCNA 199
           TV F C A+G P P + W+ NGK   Q       KV      + +E++  SD GNY C  
Sbjct: 11  TVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 70

Query: 200 TNSLG 204
            N  G
Sbjct: 71  ENEYG 75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 44.2 bits (104), Expect = 8e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 146 ECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP--NRITIENLRKSDTGNYGCNATNSL 203
           EC A+G P P+I W  +G     A    R  V P  +   I +++  DTG Y C A N+ 
Sbjct: 4   ECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTA 63

Query: 204 GYVYKDVYVNVL 215
           G +  +  + VL
Sbjct: 64  GSISANATLTVL 75

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 46  LRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGNYGKSLIIKHVEFSDQGS 101
           +  K + L C   G P P+ IW K+   I  S+    ++ QG Y  SL IK V   D G 
Sbjct: 14  MEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYA-SLTIKGVTSEDSGK 72

Query: 102 YTCEVSNGVGEAKSYSIDLSV 122
           Y+  V N  G      +D++V
Sbjct: 73  YSINVKNKYGGET---VDVTV 90

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN--DYSLTVTKSSELDSGQY 379
           G S T  C+    P +   + W +  + ++  +     ++     +LT++  +  DSG Y
Sbjct: 1   GSSVTLTCSVSGPPQV--DVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTY 58

Query: 380 TCRA 383
           TC  
Sbjct: 59  TCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 13/98 (13%)

Query: 130 VEPEFINAAEEETV-----TFECKASGLPEPEIHW--VHNGKPISQAPPNPRRKV----- 177
           V+P  I    E TV     T  CKA G P PEI W    +G   S+   +P  ++     
Sbjct: 1   VQPHIIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQ 60

Query: 178 -GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
            G + + I++++ SD+G Y C A + +G   K +Y+++
Sbjct: 61  HGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTILETGDLKITDVAFADSGEYTC 287
             TV   C   G P P + W+ N KE       GG     +   L +  V  +D G YTC
Sbjct: 9   ANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 68

Query: 288 FARNKLGTAQGSGSLTV 304
              N+ G+   +  L V
Sbjct: 69  VVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 21/91 (23%)

Query: 233 GKTVVLTCRVFGAPKPEVNWI-HNQKELTGGRY------------------TILETGDLK 273
           G  V   C+V+   +P + W+ H   E+ G +Y                  T  E+  L 
Sbjct: 1   GSDVEFHCKVYSDAQPHIQWLKHV--EVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLY 58

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
           + +V+F D+GEYTC A N +G +  S  LTV
Sbjct: 59  LRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. Length = 90

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 126 PYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
           P F  +P    F   + EE VT  C+A   P     W  NG  I  AP +    V  N +
Sbjct: 2   PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLV 61

Query: 183 TIENLRKSDTGNYGCNATNSLGYV 206
                +  D G+Y C A N  G V
Sbjct: 62  INNPQKARDAGSYQCLAINRCGTV 85

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 8/80 (10%)

Query: 139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNR-ITIENLRKSDTGNYG 196
           + + VT  C+A G     I WV+NG         PR ++   NR +T  N+ +SDTG+Y 
Sbjct: 17  DNQPVTLTCEAEGQAT-YIWWVNNGSL----LVPPRLQLSNDNRTLTFNNVTRSDTGHYQ 71

Query: 197 CNATNSLGYVYKDVYV-NVL 215
           C A+N +  +  D Y+ NV 
Sbjct: 72  CEASNEVSNMTSDPYILNVN 91

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D4 Ig-like domain. Length = 91

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 9/66 (13%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPI-----NPSDRISQGNYGKSLIIKHVEFSDQGSYTCE 105
             L C   G P P   W  +GVPI     +P  R+     G +LI+ +V+ +D   Y C 
Sbjct: 4   GRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD----GGTLILSNVQPNDTAVYQCN 59

Query: 106 VSNGVG 111
            SN  G
Sbjct: 60  ASNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 59  GTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI 118
             P P   WSK    +  S RI     G SL I +V  SD+G YTC   N  G+A S   
Sbjct: 12  AAPKPTISWSKGTELLTNSSRICIWPDG-SLEILNVTKSDEGKYTCFAENFFGKANSTGS 70

Query: 119 DLSV 122
            LSV
Sbjct: 71  -LSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATN 201
           V  ECK    P+P I W    + ++    + R  + P+  + I N+ KSD G Y C A N
Sbjct: 4   VIIECKPKAAPKPTISWSKGTELLTN---SSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60

Query: 202 SLG 204
             G
Sbjct: 61  FFG 63

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
           V++ C   G P P   W+KDGV +  S +  IS   Y   L I+ V  +DQG Y C   N
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGY---LAIRDVGVADQGRYECVARN 57

Query: 109 GVGEAKSYSIDLS 121
            +G A S S+ LS
Sbjct: 58  TIGYA-SVSMVLS 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 50  KVELFCIFGGTPLPQTIWSKDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGSYTCEV 106
            V L C   G P     W K+G  +  S  +          +L I +V   D G+YTC V
Sbjct: 3   SVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD----LKI 274
           P+I + P+D     G++V L C+V G       W+  +K++  G    +E  +    L I
Sbjct: 1   PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTI 60

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
           T+      G YT    NKLG+ Q   +LTV
Sbjct: 61  TEGQQEHCGCYTLEVENKLGSRQAQVNLTV 90

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 126 PYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
           P F  +P+   F   ++E  V+  C+A G P P   W+ NG  I   P +    VG N +
Sbjct: 2   PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLV 61

Query: 183 TIENLRKS-DTGNYGCNATNSLGYV 206
            I N  K+ D G Y C A+N +G V
Sbjct: 62  -ISNPSKAKDAGRYQCLASNIVGTV 85

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 49  KKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKSLIIKHVEFSDQGSYTC 104
           K + L C   G P P+  W K+   +  SD     + QG Y  SL IK V   D G Y  
Sbjct: 17  KTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYA-SLTIKGVSSEDSGKYGI 75

Query: 105 EVSNGVGEAKSYSIDLSV 122
            V N  G     ++D++V
Sbjct: 76  VVKNKYG---GETVDVTV 90

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP-NRITIENLRKSDTGNYGCNATNS 202
           +  C A G+P P + W+ NG  I+         +   + + I N+R  DTG Y C A N 
Sbjct: 2   SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61

Query: 203 LG 204
            G
Sbjct: 62  AG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
           + L CI  G P P+  W +   P++P +R  + N  K+L + +V  SD G Y C   N  
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSP-NRTKKLNNNKTLQLDNVLESDDGEYVCTAENSE 59

Query: 111 GEAK 114
           G A+
Sbjct: 60  GSAR 63

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 18/100 (18%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW---------IHNQKELTG-----GRY 264
           P I +  K+E TV+     L+C+  G P PE+ W             K   G     G++
Sbjct: 3   PHIIQL-KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH 61

Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
                  L I DV  +DSG Y C A +++G  Q S  L +
Sbjct: 62  G---ESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
           G +V LTC   GAP P V W+   +ELT      +    L++T++   +S  YTC A + 
Sbjct: 1   GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISS 58

Query: 293 LGTAQGSGSLT 303
           LG  + +  +T
Sbjct: 59  LGMIEATAQVT 69

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR---ITIENLR 188
           P+ +   E +T+   C   G P+PE+ W+ N + ++ +  +   KV   +   +TI+ + 
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS-DHYNVKVEQGKYASLTIKGVS 66

Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNV 214
             D+G YG    N  G    DV V+V
Sbjct: 67  SEDSGKYGIVVKNKYGGETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 312 DQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKS 371
               D E + G S  + C A  +P  + +  WL+  +P+  E+    ++     L +TK 
Sbjct: 4   KVISDTEADIGSSLRWECKASGNP--RPAYRWLKNGQPLASENR---IEVEAGDLRITKL 58

Query: 372 SELDSGQYTCRAQTELDFIEAQATLTV 398
           S  DSG Y C A+ +   I A A L V
Sbjct: 59  SLSDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE----TGDLKITDVAFADSGEYTCF 288
           G+TV  TC   G P P +NW  N   +       +      G L I DV  +D G YTC 
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 289 ARNKLGT--AQGSGSLTV 304
           A N  G       G LTV
Sbjct: 61  AINTRGMVFGIPDGILTV 78

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 141 ETVTFECKASGLPEPEIHW---VHNGKPISQAPPNPRRKVGPNRI---TIENLRKSDTGN 194
           ET +F C  +G P PEI W   VH  + +   P + R  V    I    I N +  D G 
Sbjct: 2   ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGL 61

Query: 195 YGCNATNSLGYVYKDVYVNV 214
           Y C A NS G +  +  ++V
Sbjct: 62  YTCTARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 51  VELFCIFGGTPLPQTIWSKDG--VPINPSDRIS--QGNYGK-SLIIKHVEFSDQGSYTCE 105
           V L C     P PQ  W K+   +  N  DRIS  Q N G+  L+I++    D G YT  
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNT-DRISLYQDNCGRICLLIQNANKEDAGWYTVS 59

Query: 106 VSNGVG 111
             N  G
Sbjct: 60  AVNEAG 65

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 38  VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFS 97
           V  K   AL+ + V L C   G P+P   W K   P+  +  IS    G  L I +++  
Sbjct: 6   VKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMS--GAVLKIFNIQPE 63

Query: 98  DQGSYTCEVSNGVGEAK 114
           D+G+Y CE  N  G+ K
Sbjct: 64  DEGTYECEAENIKGKDK 80

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTG----GRYTILETGDLKITDVAFADSGEYTCF 288
           G+T  L C+V G P P + W  N   + G     R  +  +G L +TDV  +D+  Y C 
Sbjct: 1   GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-SSGALILTDVQPSDTAVYQCE 59

Query: 289 ARNKLG 294
           ARN+ G
Sbjct: 60  ARNRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPP--NPRRKVGPNRITIENLRKSDTGNYGC 197
             +VT  C  SG P+ ++ W   GK + ++        +V    +TI N+   D+G Y C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 198 NA 199
             
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIE 185
           +F  EP  I A     V   C A G P P+I W  +G  ++    + RR+  PN  + I 
Sbjct: 1   WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLV-SDERRQQLPNGSLLIT 59

Query: 186 NLR-----KSDTGNYGCNATN-SLGYV 206
           ++      K D G Y C A N SLG +
Sbjct: 60  SVVHSKHNKPDEGFYQCVAQNDSLGSI 86

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 41.1 bits (96), Expect = 8e-05
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 15/77 (19%)

Query: 238 LTCRVFGAPKPEVNWIHNQKELTGG---------RYTILETGD-LKITDVAFADSGEYTC 287
           L C   G P P++ W   QK+  GG         R  ++   D   I DV   D+G Y+C
Sbjct: 3   LECAATGHPTPQIAW---QKD--GGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSC 57

Query: 288 FARNKLGTAQGSGSLTV 304
            A+N  G+   + +LTV
Sbjct: 58  TAQNTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|165149 PHA02785, PHA02785, IL-beta-binding protein; Provisional

 Score = 45.0 bits (106), Expect = 8e-05
 Identities = 78/301 (25%), Positives = 117/301 (38%), Gaps = 63/301 (20%)

Query: 34  KQQYVTRKKEVALRNKKVELFC-----IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKS 88
           K QY     E  L N+ V L C     +  G  +   +W K G     +DRI   + G +
Sbjct: 29  KGQYFASFME--LENEPVILPCPQINTLSSGYNILDILWEKRGAD---NDRIIPIDNGSN 83

Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVE----PEFINAAEEETVT 144
           ++I +   SD G Y C   N        S++L++++     ++    P+ +N  E  T  
Sbjct: 84  MLILNPTQSDSGIYICITKNET-YCDMMSLNLTIVSVSESNIDLISYPQIVN--ERSTGE 140

Query: 145 FECK------ASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGC 197
             C       AS +   +I W  +G    +   N R ++  P  ITIE++RK+D G Y C
Sbjct: 141 MVCPNINAFIASNV-NADIIW--SGHRRLR---NKRLKQRTPGIITIEDVRKNDAGYYTC 194

Query: 198 NATNSLGYVYKDVYVNVLAHA---------PEITEAPKDEYTVDGKTVVLTCRVFGAP-- 246
                L Y+Y D   NV             P   + P+   T  G  + + CRV   P  
Sbjct: 195 ----VLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPT 250

Query: 247 -KPEVNWIHN------QKELTGGRYTILE-----------TGDLKITDVAFADSGEYTCF 288
              +V WI N        E   GR ++             T  L I  V   D+  +TC 
Sbjct: 251 TDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCM 310

Query: 289 A 289
           A
Sbjct: 311 A 311

Length = 326

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKEL---TGGRYTILETGDLKITDVAFA-DSGEYTC 287
           D K V+L C   G P P   W+ N  E+   +  RY++++ G+L I++ +   DSG Y C
Sbjct: 18  DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID-GNLIISNPSEVKDSGRYQC 76

Query: 288 FARNKLGT 295
            A N +G+
Sbjct: 77  LATNSIGS 84

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 237 VLTCRVFGA-PKPEVNWIHNQKELTGG---RYTILETG----DLKITDVAFADSGEYTCF 288
           VL C      P     W  + KEL      R   +       +L+I     ADSGEYTC 
Sbjct: 2   VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCV 61

Query: 289 ARNKLGTAQGSGSL 302
             N LG    + ++
Sbjct: 62  VENILGNDTVTANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 41.2 bits (96), Expect = 9e-05
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 51  VELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
           V L C   G P P TI W ++G     S     G+ G +L +  V   D G+YTC  SN
Sbjct: 18  VTLTCSAEGGPPPPTISWYRNGSISGGSGG--LGSSGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 41.5 bits (97), Expect = 9e-05
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 126 PYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
           P F  EP+   F   ++E+ V   C+A G P P   W+ NG  I     + R  +    +
Sbjct: 2   PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEID-TESDYRYSLIDGNL 60

Query: 183 TIENLRKS-DTGNYGCNATNSLGYV 206
            I N  +  D+G Y C ATNS+G +
Sbjct: 61  IISNPSEVKDSGRYQCLATNSIGSI 85

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 131 EPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
           EP          V+F C+A S  P   + W   G  +   P       G   +TI N++ 
Sbjct: 7   EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL---PSRAMDFNG--ILTIRNVQL 61

Query: 190 SDTGNYGCNATNSL 203
           SD G Y C  +N L
Sbjct: 62  SDAGTYVCTGSNML 75

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQK---ELTGGRYTILETGDLKITDVAFADSGEYTCFA 289
           G+T  L C   G P+P + W  N     EL       ++ G L +++V   D+  Y C A
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 290 RNKLGTA 296
            N  G  
Sbjct: 61  SNVHGYL 67

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPI-----NPSDRISQGNYGKSLIIKHVEFSDQGSYTCE 105
             L C   G P P   WS +G PI     +P   +S G    +LI+  V+ SD   Y CE
Sbjct: 4   ARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSG----ALILTDVQPSDTAVYQCE 59

Query: 106 VSN 108
             N
Sbjct: 60  ARN 62

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTG-GRYTILETGD----LKITDVAFADSGEYTCFA 289
           +V L   + G P P V W  + K L   GR  I ET      L I +   +DSG+YT   
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQI-ETTASSTSLVIKNAERSDSGKYTLTL 59

Query: 290 RNKLGTAQGSGSLTVK 305
           +N  G    S ++ VK
Sbjct: 60  KNPAGEK--SATINVK 73

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 31/79 (39%), Positives = 36/79 (45%), Gaps = 7/79 (8%)

Query: 51  VELFCIFGGTPLPQTIW--SK-DGVP----INPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
           V L C   G P P  +W  SK  G P            Q     SL+IKHV   D G Y 
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 104 CEVSNGVGEAKSYSIDLSV 122
           C+VSN VG   S S+ L+V
Sbjct: 61  CKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143226 cd05749, Ig2_Tyro3_like, Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
           FTVEPE ++          C+A G PEP EI W   G P+   P        P+ + +  
Sbjct: 1   FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPS-----PSVLNVPG 55

Query: 187 LRKSDTGNYGCNATNSLG 204
           L ++    + C A N+ G
Sbjct: 56  LNETSK--FSCEAHNAKG 71

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and cell proliferation. Length = 81

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY------- 85
           PK  YV  +  + L  + + L C   G P+P   W      I+  ++   G+        
Sbjct: 3   PKITYVENQTAMELEEQ-ITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHAR 61

Query: 86  GKSLIIKHVEFSDQGSYTCEVSNGVGE 112
             SL +K+++++D G Y C  SN +G+
Sbjct: 62  VSSLTLKYIQYTDAGEYLCTASNTIGQ 88

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 236 VVLTCRVFGAPKPEVNWIHNQKE---------LTGGRYTILETGDLKITDVAFADSGEYT 286
           V L C   G P P + W H++              GR  +L  G L I  V   DSG Y 
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 287 CFARNKLGT-AQGSGSLTV 304
           C   N +G  A  S  LTV
Sbjct: 61  CKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPN------PRRKVGPNRITIENLRKSDTG 193
           EE +T  C+ASG P P I W  + + IS            R     + +T++ ++ +D G
Sbjct: 17  EEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAG 76

Query: 194 NYGCNATNSLGYVYKDVYVNV 214
            Y C A+N++G   + +Y+ V
Sbjct: 77  EYLCTASNTIGQDSQSMYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 148 KASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL 203
           K    P PEI W  NGK IS+     R K   + +TI+++ + D GNY    TN  
Sbjct: 6   KVKAYPPPEIQWYKNGKLISE---KNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQ 58

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 219 PEITEAPKD----EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE---LTGGRYTILETGD 271
           P   E P D    E + +GK V L CR  G+P P   W+ N  E       RY+++  G+
Sbjct: 2   PVFEEQPDDTIFPEESDEGK-VSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG-GN 59

Query: 272 LKITD-VAFADSGEYTCFARNKLGT 295
           L I++     D+G Y C A N +GT
Sbjct: 60  LVISNPSKAKDAGRYQCLASNIVGT 84

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 22/76 (28%), Positives = 31/76 (40%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVA 278
            +I    KD Y + G+ V L C   G P P + W    + +       +    LKI ++ 
Sbjct: 2   ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQ 61

Query: 279 FADSGEYTCFARNKLG 294
             D G Y C A N  G
Sbjct: 62  PEDEGTYECEAENIKG 77

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 143 VTFECKASGLPEPEIHWVHNGKP--ISQAPP-NPRRKVGPNRITIENLRKSDT--GNYGC 197
           +  +C+A G P P   W  NG      + P    +   G   I   N  +++   G Y C
Sbjct: 1   IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQC 60

Query: 198 NATNSLG 204
            A+N LG
Sbjct: 61  YASNELG 67

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 16/73 (21%)

Query: 236 VVLTCRVFGAPKPEVNWIHNQKELT------------GGRYTILETGDLKITDVAFADSG 283
           +V+ C   G P P  +W  N                  G   I      +  D      G
Sbjct: 1   IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDY----EG 56

Query: 284 EYTCFARNKLGTA 296
           EY C+A N+LGTA
Sbjct: 57  EYQCYASNELGTA 69

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 11/72 (15%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
            P    V  G+  T  C+A  +P    +  W +   P+          S +   T   S+
Sbjct: 5   TPSPTVVFEGEDVTLTCSAPGNP--PPNYTWYKDGVPLS--------SSQNGFFTPNVSA 54

Query: 373 ELDSGQYTCRAQ 384
           E DSG YTC A 
Sbjct: 55  E-DSGTYTCVAS 65

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 142 TVTFECKASGLPEPEIHWV-HNGKPISQAPPN--PRRKV----GPN-------RITIENL 187
           TV F CK     +P I W+ H  K  S+  P+  P   V    G N        + + N+
Sbjct: 3   TVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNV 62

Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVL 215
              D G Y C A NS+G  +   ++ VL
Sbjct: 63  TFEDAGEYTCLAGNSIGISHHSAWLTVL 90

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATN 201
           V   C A G PEP I W  +G  ++++    +  + P   + I ++  +D G Y C A N
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTES---GKFHISPEGYLAIRDVGVADQGRYECVARN 57

Query: 202 SLGY 205
           ++GY
Sbjct: 58  TIGY 61

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEFS---- 97
           VA+R   V L C   G P P+  W KDGV +N    +R  Q   G SL+I  V  S    
Sbjct: 10  VAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG-SLLITSVVHSKHNK 68

Query: 98  -DQGSYTCEVSNG 109
            D+G Y C   N 
Sbjct: 69  PDEGFYQCVAQND 81

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 58  GGTPLPQTIWSKDGVPINPSDRISQGNYGKS-----LIIKHVEFSDQGSYTCEVSNGVGE 112
              P  +  W KDG  +N  ++              L I   + +D G YTC V N +G 
Sbjct: 9   SEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGN 68

Query: 113 AKS 115
              
Sbjct: 69  DTV 71

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG----DLKITD 276
             + P      +G T  + C   G+P P+V WI     +   R   LET     +L++++
Sbjct: 3   PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSN 62

Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
           +        TC A N +G A  S  +TV
Sbjct: 63  ITSETQTTVTCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
           V+  C   G P P   W+K G  +   DR        +L I  V   DQG Y C+  N V
Sbjct: 5   VDFLCEAQGYPQPVIAWTKGGSQL-SVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIV 63

Query: 111 GEAK 114
           G  +
Sbjct: 64  GSQR 67

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 240 CRVFGAPKPEVNWIHN--QKELTG-GRYTILETGDLKITDVAFADSGEYTCFARNKLGT 295
           C   G P PE+ W  +    + T  GR   L +G L+I +   +D G+Y C A N  GT
Sbjct: 5   CAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGT 63

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGDLKITDVAFA- 280
           P D   V G  VVL C   G P P++ W  +   L      R   L  G L IT V  + 
Sbjct: 6   PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSK 65

Query: 281 ----DSGEYTCFARNK-LGT 295
               D G Y C A+N  LG+
Sbjct: 66  HNKPDEGFYQCVAQNDSLGS 85

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 236 VVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILE---TGDLKITDVAFADSGEYT 286
           + LTC   G P P + W      I ++++   G   +        L +  + + D+GEY 
Sbjct: 20  ITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79

Query: 287 CFARNKLG 294
           C A N +G
Sbjct: 80  CTASNTIG 87

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 20/58 (34%), Positives = 25/58 (43%)

Query: 236 VVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKL 293
           V L  +V   P PE+ W  N K ++    T      L I DV   D+G YT    NK 
Sbjct: 1   VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQ 58

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 44/135 (32%)

Query: 604 NPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSEL 663
            P N+     T  ++ +SWT   +     P   Y + +R                     
Sbjct: 3   PPTNLRVTDVTSTSVTLSWTPPEDD--GGPITGYVVEYR--------------------- 39

Query: 664 VLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN 723
                                + G G  +E+ V  G  T+  +    P ++   RV A N
Sbjct: 40  ---------------------EKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVN 78

Query: 724 GAYNGPPSEIISFVT 738
           G    PPSE ++  T
Sbjct: 79  GGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 12/90 (13%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKEL---TGGRYTILET---- 269
            P I  +   +Y + G    + C +F  P P+ + W   + EL   + GRYT+       
Sbjct: 1   GPPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPG 60

Query: 270 ---GDLKITDVAFAD-SGEYTCFARNKLGT 295
                L I++   +D    Y C A N  G+
Sbjct: 61  GVLSTLTISNTQESDFQTSYNCTAWNSFGS 90

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTC 381
           GQS T  C+A   P   ++  W +  EPI+   E      +   +T+    +LD  +YTC
Sbjct: 18  GQSVTLACDADGFPEPTMT--WTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTC 75

Query: 382 RAQTELDFIEAQATLTVQV 400
            A+ +    E +A + ++V
Sbjct: 76  IAENKAG--EQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIK 92
           P    V  K   AL+ + V L C   G P+PQ  W K    +  S  IS    G  L I 
Sbjct: 1   PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMS--GAVLKIP 58

Query: 93  HVEFSDQGSYTCEVSNGVG 111
           +++F D+G+Y CE  N  G
Sbjct: 59  NIQFEDEGTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRR------KVGPNRITIENLRKSDTGNYG 196
           V  EC+ S +P P+I W  N + ++    N  R        G   + I+N  K D G Y 
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTY---NTDRISLYQDNCGRICLLIQNANKEDAGWYT 57

Query: 197 CNATNSLGYV 206
            +A N  G V
Sbjct: 58  VSAVNEAGVV 67

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 248 PEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
           P V W  + K L G R   ++   L I +V   D+G YTC
Sbjct: 30  PPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTC 69

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 20/64 (31%), Positives = 27/64 (42%)

Query: 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS 202
           VT  C   G P P   W  +G P+S    N         +T+ +    D+G Y C A N+
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 203 LGYV 206
            G V
Sbjct: 61  FGSV 64

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277
            P +T  P      +G+ V LTC   G P P   W  +   L+  +            +V
Sbjct: 1   KPVLT--PSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF------TPNV 52

Query: 278 AFADSGEYTCFARN 291
           +  DSG YTC A N
Sbjct: 53  SAEDSGTYTCVASN 66

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-------LKITDVAFADSGEY 285
           G +V L C   G P+P++ W+ + K L     T  E G+       L + ++   DSG+Y
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPL-----TPTEIGESRKKKWTLSLKNLKPEDSGKY 63

Query: 286 TCFARNKLG 294
           TC   N+ G
Sbjct: 64  TCHVSNRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 64  QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
              W  +G  +    R+   N  ++L   +V  SD G Y CE SN V    S    L+V 
Sbjct: 33  YIWWVNNGSLL-VPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNVN 91

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D4 Ig-like domain. Length = 91

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS--L 366
            I   PED +V AG+S    C      +  ++  W++  + I  E E   +++ + S  L
Sbjct: 2   QIIQFPEDMKVRAGESVELFCKVTG--TQPITCTWMKFRKQIQ-EGEGIKIENTENSSKL 58

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
           T+T+  +   G YT   + +L   +AQ  LTV
Sbjct: 59  TITEGQQEHCGCYTLEVENKLGSRQAQVNLTV 90

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI---TIENLRKSDTGNY 195
           E  T T  C A G P P++ W+  G  + Q             I    + N+        
Sbjct: 14  EGGTATIRCTAEGSPLPKVEWIIAGLIVIQ--TRTDTLETTVDIYNLQLSNITSETQTTV 71

Query: 196 GCNATNSLGYVYKDVYVNV 214
            C A N +G     V V V
Sbjct: 72  TCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 55  CIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112
           C   G P P   W ++G  I  S R  I+   Y  +  I  V+ SD+G+YT  V N  G+
Sbjct: 25  CDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGK 84

Query: 113 AKS 115
            ++
Sbjct: 85  QEA 87

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR- 181
           L A   T +P  +  +E E+  F C   G P P + W+  G+ I  +    R ++     
Sbjct: 2   LPATILT-KPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS---QRHQITSTEY 57

Query: 182 ---ITIENLRKSDTGNYGCNATNSLG 204
                I  ++ SD GNY     NS G
Sbjct: 58  KSTFEISKVQMSDEGNYTVVVENSEG 83

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN-QKELTGGRYTILET---GDLK 273
              I   P+     +G++   +C V G P P V W+   Q  ++  R+ I  T      +
Sbjct: 3   PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLT 303
           I+ V  +D G YT    N  G  +   +LT
Sbjct: 63  ISKVQMSDEGNYTVVVENSEGKQEAQFTLT 92

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 50  KVELFCIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGKSLIIKHVEFSDQGSYTCEV 106
           K+ L     G P P   WS+       ++   R+       S +I+  E  D+G YT  V
Sbjct: 12  KLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITV 71

Query: 107 SNGVGEAKS 115
           +N VGE  +
Sbjct: 72  TNPVGEDHA 80

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 224 APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN-----QKELTGGRYTILETGDLKITDVA 278
             K    V+G +V L C    +    V W+       +KE    R  + E G L I  V+
Sbjct: 2   EEKVVTVVEGNSVFLECSP-KSNLASVVWLFQGGPLQRKEEPEERLLVTEDGLL-IRSVS 59

Query: 279 FADSGEYTCFA 289
            AD+G YTC +
Sbjct: 60  PADAGVYTCQS 70

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
            P  TV P   +      VT  C A G  P P I W  NG   S +  +       + +T
Sbjct: 1   KPVITVSPS-PSVTSGGGVTLTCSAEGGPPPPTISWYRNG---SISGGSGGLGSSGSTLT 56

Query: 184 IENLRKSDTGNYGCNATN 201
           + ++   D+G Y C A+N
Sbjct: 57  LSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 322 GQSATFRCNAVSDPSLKLSIVWLR-GSEPIDFESEP-----RFVQSNDYSLTVTKSSELD 375
           G++ TF+C A  +P  + +I W + GS+ + F  +P     RF  S    LT+T     D
Sbjct: 1   GRTVTFQCEATGNP--QPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSD 58

Query: 376 SGQYTCRAQTELDFIEAQATLTV 398
            G Y C+       I  +A L V
Sbjct: 59  VGYYICQTLNVAGSILTKAYLEV 81

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 143 VTFECKASGLPEPEIHWVHN---GKPISQ--APPNPRRKVGPN-RITIENLRKSDTGNYG 196
           VT  C A G P P I W H+   G P          R ++  N  + I+++ + D+G Y 
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 197 CNATNSLG 204
           C  +N +G
Sbjct: 61  CKVSNDVG 68

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATN 201
           V F+C+  G P P + W      +    P  R ++  ++ + I N+   D G+Y C A N
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGEL----PKGRAEILDDKSLKIRNVTAGDEGSYTCEAEN 56

Query: 202 SLG 204
            +G
Sbjct: 57  MVG 59

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 147 CKASGL-PEPEIHWVHNGKPI--SQAPPN--PRRKVGPNRITIENLRKSDTGNYGCNATN 201
           C+A+   P     W  +GK +     P N   R K   + + I   + +D+G Y C   N
Sbjct: 5   CEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN 64

Query: 202 SLG 204
            LG
Sbjct: 65  ILG 67

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 61  PLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG-VGEAKSYSID 119
           P P+  W K+G  I+  +R  +  +  SL IK V   D G+YT  ++N      K  +  
Sbjct: 11  PPPEIQWYKNGKLISEKNRTKKSGH--SLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT 68

Query: 120 LSV 122
           L V
Sbjct: 69  LVV 71

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 51  VELFCIFGGTPLPQTIWSKDG--VPINPSDRIS--QGNYGK-SLIIKHVEFSDQGSYTCE 105
           V+L C     P P+  W ++   V  N +DRIS  Q N G+ +L+IK+V   D G YT  
Sbjct: 1   VKLECQISAIPPPKIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVS 59

Query: 106 VSNGVGEA 113
             N  G A
Sbjct: 60  AVNEAGVA 67

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 219 PEITEAPKD----EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE--LTGGRYTILETGDL 272
           P   E P D    E + +GK V + CR    P P   W  N  +  LT  RY+++  G+L
Sbjct: 2   PVFEEQPIDTIYPEESTEGK-VSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV-GGNL 59

Query: 273 KITDV-AFADSGEYTCFARNKLGTAQGS 299
            I +   + D+G Y C   N  G  +  
Sbjct: 60  VINNPDKYKDAGRYVCIVSNIYGKVRSR 87

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI-----DFESEPRFVQSND- 363
           I + P D  V  G  AT  C A   P+   +I WL+  +P+     D  S    + S   
Sbjct: 4   IVEHPSDLIVSKGDPATLNCKAEGRPT--PTIQWLKNGQPLETDKDDPRSHRIVLPSGSL 61

Query: 364 --YSLTVTKSSELDSGQYTCRAQTEL 387
               +   +    D G Y C A   L
Sbjct: 62  FFLRVVHGRKGRSDEGVYVCVAHNSL 87

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 18/92 (19%)

Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSE----PIDFESEPRFVQ------SNDYS-----L 366
           G    F C   SD   +  I WL+  E        +  P +V        N        L
Sbjct: 1   GSDVEFHCKVYSDA--QPHIQWLKHVEVNGSKYGPDGLP-YVTVLKVAGINTTDNESEVL 57

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
            +   S  D+G+YTC A   +      A LTV
Sbjct: 58  YLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. Length = 90

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSE 373
           P   EV  G   +F C A S  S   ++VW R    +     P      +  LT+     
Sbjct: 8   PRSQEVRPGADVSFICRAKSK-SPAYTLVWTRVGGGL-----PSRAMDFNGILTIRNVQL 61

Query: 374 LDSGQYTCRAQTELDFIEAQATL 396
            D+G Y C     LD  EA ATL
Sbjct: 62  SDAGTYVCTGSNMLDTDEATATL 84

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 23/102 (22%)

Query: 129 TVEPEFINAAEEETVTFECKASGL-PEPEIHWV---HNGKP---ISQAPPNPRRKVGPN- 180
           T  P  +  AE  +VT  C  S       ++W        P   I      P  KVGP  
Sbjct: 5   TQPPRPVTVAEGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRF 64

Query: 181 ---------------RITIENLRKSDTGNYGCNATNSLGYVY 207
                           +TI NLR SD+G Y C  +N    V+
Sbjct: 65  KGRVTLSGNGSKNDFSLTISNLRLSDSGTYTCAVSNPNELVF 106

This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114

>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 24/112 (21%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGS-------------EPIDFESEP 356
           +T  P    V  G S T  C + S  S   S+ W +                  + +  P
Sbjct: 4   VTQPPRPVTVAEGGSVTLPC-SFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGP 62

Query: 357 RF---------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFI-EAQATLTV 398
           RF            ND+SLT++     DSG YTC      + +  A   LTV
Sbjct: 63  RFKGRVTLSGNGSKNDFSLTISNLRLSDSGTYTCAVSNPNELVFGAGTRLTV 114

This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114

>gnl|CDD|143261 cd05853, Ig6_Contactin-4, Sixth Ig domain of contactin-4

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 323 QSATFRCNAVSDPSLKLSIVWLRGSEPIDFESE----PRFVQSNDYSLTVTKSSELD-SG 377
           +S    C    D SL +   W      IDF+ +     R    +     + +S +L  +G
Sbjct: 1   ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAG 60

Query: 378 QYTCRAQTELDFIEAQATLTVQVP 401
           +Y C  QT +D + A A L V+ P
Sbjct: 61  KYVCMVQTSVDKLSAAADLIVRGP 84

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	745
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
KOG3513|consensus	1051		100.0
KOG4222|consensus	1281		100.0
KOG4222|consensus	1281		100.0
KOG4194|consensus	873		99.97
PHA02785	326	IL-beta-binding protein; Provisional	99.96
KOG4194|consensus	873		99.96
PHA02785	326	IL-beta-binding protein; Provisional	99.95
PHA02826	227	IL-1 receptor-like protein; Provisional	99.84
KOG3515|consensus	741		99.81
PHA02826	227	IL-1 receptor-like protein; Provisional	99.79
KOG0196|consensus	996		99.72
KOG0196|consensus	996		99.71
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.64
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.63
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.6
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.57
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.57
KOG3515|consensus	741		99.55
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.55
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.54
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.54
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.54
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.53
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.53
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.53
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.52
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.52
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.52
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.52
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.51
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.51
KOG4258|consensus	1025		99.51
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.5
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.5
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.5
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.5
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.5
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.49
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.49
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.48
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.48
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.47
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.47
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.47
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.46
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.46
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.46
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.46
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.46
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.46
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.46
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.46
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.45
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.45
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.45
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.44
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.44
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.44
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.44
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.44
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.44
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.44
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.43
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.43
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.43
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.43
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.43
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.43
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.42
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.42
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.42
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.42
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.42
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.41
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.41
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.41
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.41
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.4
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.4
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.4
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.4
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.4
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.4
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.39
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.39
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.39
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.39
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.39
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.39
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.39
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.39
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.38
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.38
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.38
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.37
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.37
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.37
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.37
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.37
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.36
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.36
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.36
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.36
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.36
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.36
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.36
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.36
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.35
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.35
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.35
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.35
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.34
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.34
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.34
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.34
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.34
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.34
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.34
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.33
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.33
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.33
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.33
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.32
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.32
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.32
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.32
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.31
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.31
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.31
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.31
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.3
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.3
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.3
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.3
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.3
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.28
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.28
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.28
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.28
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.28
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.27
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.27
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.27
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.27
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.27
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.26
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.26
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.25
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.25
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.25
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.25
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.24
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.23
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.23
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.23
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.23
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.23
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.23
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.23
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.22
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.22
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.21
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.21
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.2
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.18
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.18
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.18
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.18
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.17
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.17
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.17
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.16
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.15
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.13
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.13
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.12
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.12
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.11
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.11
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.11
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.1
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.09
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.09
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.07
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.07
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.07
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.07
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.05
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.05
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.04
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.03
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.01
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.01
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.0
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.0
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.0
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	98.98
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.98
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.96
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.96
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.96
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.95
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.94
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.91
smart00409	86	IG Immunoglobulin.	98.91
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.91
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.9
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.89
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.88
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.88
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.87
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.84
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.84
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.83
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.81
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.8
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.79
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.79
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.79
PHA03376	221	BARF1; Provisional	98.77
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.77
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.76
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.76
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.75
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.75
KOG4802|consensus	516		98.72
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.71
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.7
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.7
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.68
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.68
PHA03376	221	BARF1; Provisional	98.67
smart00409	86	IG Immunoglobulin.	98.67
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.67
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.65
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.61
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.59
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.56
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.56
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.54
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.5
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.5
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.48
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.46
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.46
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.45
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.43
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.43
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.42
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.41
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.4
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.4
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.36
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.35
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.35
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.34
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.33
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.33
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.33
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.33
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.32
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.32
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.31
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.31
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	98.3
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.29
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.28
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.27
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.26
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.23
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.23
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.22
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.22
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	98.2
PHA03273	486	envelope glycoprotein C; Provisional	98.2
KOG4802|consensus	516		98.19
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.17
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.17
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.16
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.16
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.16
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.15
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.15
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.15
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.13
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.12
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.11
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.11
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.11
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.09
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.08
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.08
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.07
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.06
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.05
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.05
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.05
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.05
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.04
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.04
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.04
PHA03269	566	envelope glycoprotein C; Provisional	98.03
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.01
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.0
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.0
PHA03270	466	envelope glycoprotein C; Provisional	98.0
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.99
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.99
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.98
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.97
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.97
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.96
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.96
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.95
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.94
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.93
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.9
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.9
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.89
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.86
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.84
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.84
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.79
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.76
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.76
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.75
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.75
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.72
PHA03270	466	envelope glycoprotein C; Provisional	97.71
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.71
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.69
KOG1480|consensus	909		97.68
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.68
PHA03273	486	envelope glycoprotein C; Provisional	97.68
PHA03271	490	envelope glycoprotein C; Provisional	97.67
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.67
smart00407	75	IGc1 Immunoglobulin C-Type.	97.66
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.64
smart00407	75	IGc1 Immunoglobulin C-Type.	97.64
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.64
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.63
KOG4258|consensus	1025		97.63
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.61
PHA03269	566	envelope glycoprotein C; Provisional	97.61
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.6
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.58
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.57
KOG0613|consensus	1205		97.56
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.56
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.56
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.55
PHA03271	490	envelope glycoprotein C; Provisional	97.53
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.51
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.49
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.47
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.47
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.46
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.43
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.41
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.41
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.38
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.36
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	97.3
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.29
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.29
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.28
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.26
KOG4152|consensus	830		97.25
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.22
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.22
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.22
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.21
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.16
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.15
smart00406	81	IGv Immunoglobulin V-Type.	97.12
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.06
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.03
KOG4367|consensus	699		97.03
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.0
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.0
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.98
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.93
KOG1480|consensus	909		96.9
KOG4228|consensus	1087		96.83
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.8
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	96.77
PRK14081	667	triple tyrosine motif-containing protein; Provisio	96.74
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.74
KOG0613|consensus	1205		96.71
smart00406	81	IGv Immunoglobulin V-Type.	96.65
KOG3632|consensus	1335		96.61
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.59
PHA02982	251	hypothetical protein; Provisional	96.47
PHA02633	63	hypothetical protein; Provisional	96.45
PHA02633	63	hypothetical protein; Provisional	96.43
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.42
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.4
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.39
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.35
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.34
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.16
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	96.13
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	96.11
KOG4367|consensus	699		96.05
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.03
KOG4152|consensus	830		95.98
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	95.95
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	95.69
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	95.64
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.35
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.12
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	94.78
KOG3632|consensus	1335		94.68
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	94.66
KOG4228|consensus	1087		94.22
PHA03042	286	CD47-like protein; Provisional	94.08
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	93.85
PHA03042	286	CD47-like protein; Provisional	93.71
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	93.64
COG4733	952	Phage-related protein, tail component [Function un	93.57
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	93.39
PHA02914	500	Immunoglobulin-like domain protein; Provisional	92.69
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	92.64
PHA02865	338	MHC-like TNF binding protein; Provisional	92.53
KOG4597|consensus	560		92.28
KOG4597|consensus	560		92.18
PHA03286	492	envelope glycoprotein E; Provisional	91.94
PHA03283	542	envelope glycoprotein E; Provisional	91.48
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	91.33
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	91.21
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	91.11
PHA02982	251	hypothetical protein; Provisional	90.85
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	90.03
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	89.59
KOG4806|consensus	454		89.55
PHA03282	540	envelope glycoprotein E; Provisional	89.35
PHA02865	338	MHC-like TNF binding protein; Provisional	88.99
PHA03283	542	envelope glycoprotein E; Provisional	88.84
PHA03282	540	envelope glycoprotein E; Provisional	88.79
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	88.73
KOG1026|consensus	774		87.97
KOG1225|consensus	525		87.45
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	87.43
PHA03052	69	Hypothetical protein; Provisional	87.24
PF09240	99	IL6Ra-bind: Interleukin-6 receptor alpha chain, bi	87.06
PHA03281	642	envelope glycoprotein E; Provisional	86.03
PHA03286	492	envelope glycoprotein E; Provisional	85.97
PHA03052	69	Hypothetical protein; Provisional	85.94
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	85.29
COG4733	952	Phage-related protein, tail component [Function un	84.52
PF09240	99	IL6Ra-bind: Interleukin-6 receptor alpha chain, bi	83.98
PRK14081	667	triple tyrosine motif-containing protein; Provisio	81.8
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	81.3
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	80.57

>KOG3513|consensus

Probab=100.00  E-value=1.5e-86  Score=694.91  Aligned_cols=681  Identities=31%  Similarity=0.519  Sum_probs=585.0

Q ss_pred             ecceeEeeeceEEEEEEecccCCcccCCCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCE-ecCCCCCeEe
Q psy11701          4 QSRSEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGV-PINPSDRISQ   82 (745)
Q Consensus         4 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~-~i~~~~~~~~   82 (745)
                      .+.....+++++.|.++...   ...+++|.+.+..|.......|+.+.|.|.+.|+|.|+|.|+|.+. ++  ..+...
T Consensus       215 ~~~~~~v~~~~~~L~~~~~~---~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~--~~r~~~  289 (1051)
T KOG3513|consen  215 PSTQTIVQGPPFPLIVRSNN---VMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPP--PRRATY  289 (1051)
T ss_pred             hhhcccccCCceeEEEcccc---cccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCC--Ccceee
Confidence            35667889999999998777   7888999999999999999999999999999999999999999766 44  456666


Q ss_pred             ccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC
Q psy11701         83 GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN  162 (745)
Q Consensus        83 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~  162 (745)
                      ...+++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..+|.++..+.+..+..|++++|.|.+.|.|.|.++|++|
T Consensus       290 ~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~-~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkN  368 (1051)
T KOG3513|consen  290 SNYGKVLKIPNVQYEDAGEYECIAENSRGSAT-HSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKN  368 (1051)
T ss_pred             eccccEEEecccCcCCCeEEEEEEecccccce-eeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeC
Confidence            68889999999999999999999999999555 88999999999999999999999999999999999999999999999


Q ss_pred             CEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCce--EEecCceEEEEE
Q psy11701        163 GKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDE--YTVDGKTVVLTC  240 (745)
Q Consensus       163 g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~--~v~~g~~~~l~C  240 (745)
                      |.++.......+.....+.|+|.++...|+|+|+|.|+|..|....++.|.|+..+|.+...+-..  .+..|..+.|.|
T Consensus       369 g~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C  448 (1051)
T KOG3513|consen  369 GEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDC  448 (1051)
T ss_pred             CeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEee
Confidence            999998888888999999999999999999999999999999999999999999889988877655  577899999999


Q ss_pred             EEeecCCCeEEEeeCCE-EccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEE
Q psy11701        241 RVFGAPKPEVNWIHNQK-ELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV  319 (745)
Q Consensus       241 ~~~~~p~~~i~W~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~  319 (745)
                      ...+.|.+.+.|.+++. .+.++++.+..+|+|.|.+++.+|+|.|+|.|.|..|.......|.|+.++.+...|....+
T Consensus       449 ~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v  528 (1051)
T KOG3513|consen  449 KPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDV  528 (1051)
T ss_pred             ccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhh
Confidence            99999999999999887 55788999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCC----eEEEEecCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND----YSLTVTKSSELDSGQYTCRAQTELDFIEAQAT  395 (745)
Q Consensus       320 ~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  395 (745)
                      ..|+.+.|.|.+..++.+++.+.|.++|..+.+..........+    +.|.|.+++..|.|.|.|.|+..+.+.++.+.
T Consensus       529 ~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~  608 (1051)
T KOG3513|consen  529 KVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARAD  608 (1051)
T ss_pred             ccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccc
Confidence            99999999999999999999999999999988764443333333    34999999999999999999998888888999


Q ss_pred             EEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCce---eEEEeccccc
Q psy11701        396 LTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGES---TTTEVDKFVP  472 (745)
Q Consensus       396 l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~L~~  472 (745)
                      +.|+.||.||.++.+.. .+.+++.|+|++++..  +.+|..|.|+++....+  .|..+..-....   .+.++-+|.|
T Consensus       609 l~V~gpPgpP~~v~~~~-i~~t~~~lsW~~g~dn--~SpI~~Y~iq~rt~~~~--~W~~v~~vp~~~~~~~sa~vv~L~P  683 (1051)
T KOG3513|consen  609 LLVRGPPGPPPDVHVDD-ISDTTARLSWSPGSDN--NSPIEKYTIQFRTPFPG--KWKAVTTVPGNITGDESATVVNLSP  683 (1051)
T ss_pred             eEEecCCCCCCceeEee-eccceEEEEeecCCCC--CCCceEEeEEecCCCCC--cceEeeECCCcccCccceeEEccCC
Confidence            99999999999999988 8999999999996644  47799999999877443  333332202222   3577889999


Q ss_pred             CcceeEEEEEecCCCCCCCCcce-EEeCCCCCCC-CCCceeEEEcCCceEEEEeeCCC--CCCCceeeEEEEEEEcCCc-
Q psy11701        473 ASKNFARVLAFNGAYNGPPSEII-SFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPE--QPNGVLMGYKIKYQSVKGT-  547 (745)
Q Consensus       473 ~~~Y~~~V~a~n~~G~g~~S~~~-~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~--~~~g~i~~Y~v~~~~~~~~-  547 (745)
                      ..+|+|||.|.|..|.|++|.+. .++|.+++|. .|.++.......+.+.|.|+|-.  ..||+-.+|+|.|+..+.. 
T Consensus       684 wv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~  763 (1051)
T KOG3513|consen  684 WVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADK  763 (1051)
T ss_pred             CcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCc
Confidence            99999999999999999999865 4889999996 79999999989999999999865  4789999999999998877 


Q ss_pred             ccCCcccccccccCCCcceeeecC--CCCCccEEEEEEEEecCCCCCCcceee-ecc----cCCCCCCCCCCCCCcceeE
Q psy11701        548 KVGPLLERLPYISDPTTTSAKLAG--LEPSTKYRIHLAGYTKAGDGAESKYLF-YVP----FKNPDNVEGRGSTPNNLVI  620 (745)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~l~~--L~p~t~Y~~~V~a~n~~G~g~~S~~~~-~~~----~~~~~~~~~~~~~p~~~~v  620 (745)
                      .|....     +.+.+...+.+.+  ..|++.|++.|.|+|..|.|+.|..+. +..    ...++.+.+.+.+.+.+.|
T Consensus       764 ~W~~~~-----v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v  838 (1051)
T KOG3513|consen  764 EWKEVI-----VSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNL  838 (1051)
T ss_pred             ccceeE-----ecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEE
Confidence            555443     3344455566554  567999999999999999999987652 121    1222344455667789999


Q ss_pred             EEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCC
Q psy11701        621 SWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGE  700 (745)
Q Consensus       621 ~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~  700 (745)
                      +|+++..  .||.+++|.|+|...++..                                        ++...+.+ .++
T Consensus       839 ~W~~~~~--~nG~l~gY~v~Y~~~~~~~----------------------------------------~~~~~~~i-~~~  875 (1051)
T KOG3513|consen  839 SWKPPLW--DNGKLTGYEVKYWKINEKE----------------------------------------GSLSRVQI-AGN  875 (1051)
T ss_pred             EecCcCc--cCCccceeEEEEEEcCCCc----------------------------------------ccccceee-cCC
Confidence            9988765  4499999999998764432                                        11122222 478


Q ss_pred             CcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCCCCc
Q psy11701        701 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGGT  743 (745)
Q Consensus       701 ~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~~~~  743 (745)
                      .++..|+||+|+|.|.|.|+|+|.+|.||+|.....+|..+++
T Consensus       876 ~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~pP  918 (1051)
T KOG3513|consen  876 RTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAPP  918 (1051)
T ss_pred             cceEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCCCC
Confidence            9999999999999999999999999999999999998887764

>KOG4221|consensus

Probab=100.00  E-value=2.5e-71  Score=575.40  Aligned_cols=684  Identities=24%  Similarity=0.374  Sum_probs=554.6

Q ss_pred             cccCCCCCeeEeeccceeEecCCcEEEEEEEeec--CCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCCC-----C
Q psy11701         27 SQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEF-----S   97 (745)
Q Consensus        27 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~~-----~   97 (745)
                      .....-|..|+++|++.  .+|..+.|.|.+...  +.+.|.|.|||..+...  ++...-. +++|.|.++..     -
T Consensus        35 ~~~~~~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~Ls-NgSl~i~~v~~~kh~~~  111 (1381)
T KOG4221|consen   35 SIQANTPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLS-NGSLYISSVLASKHNKV  111 (1381)
T ss_pred             hhhccCcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhcc-CCceeEeeecccccccc
Confidence            44556688899999976  899999999998433  46799999999877643  3333222 45688888866     7


Q ss_pred             CCEEEEEEEEeC-CeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee
Q psy11701         98 DQGSYTCEVSNG-VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK  176 (745)
Q Consensus        98 d~G~Y~C~~~~~-~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~  176 (745)
                      |.|.|+|.|.-. .|...+..+.|.+...+.|..++.+.++..|+++.|.|.+.+.|.+.+.|.||..++....  ....
T Consensus       112 ~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~--r~i~  189 (1381)
T KOG4221|consen  112 DEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDS--RVIV  189 (1381)
T ss_pred             cCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCC--cEEE
Confidence            899999999865 7888889999999999999999999999999999999999998888999999999877443  4456


Q ss_pred             ecCceEEEccCCCCCCEEEEEEEEeCCceE-EEEEEEEEeecC-----CeeeeCCCceEEecCceEEEEEEEeecCCCeE
Q psy11701        177 VGPNRITIENLRKSDTGNYGCNATNSLGYV-YKDVYVNVLAHA-----PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEV  250 (745)
Q Consensus       177 ~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~-~~~~~l~v~~~~-----p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i  250 (745)
                      ..++.|.|.++..+|.|.|+|.|++..... +..+.++|...+     ..|...|....+..|+++.|.|.+.+.|.+.|
T Consensus       190 lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v  269 (1381)
T KOG4221|consen  190 LPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSV  269 (1381)
T ss_pred             cCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCce
Confidence            678999999999999999999999875433 344677776322     23677888999999999999999999999999


Q ss_pred             EEeeCCEEccCc--eEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEE
Q psy11701        251 NWIHNQKELTGG--RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFR  328 (745)
Q Consensus       251 ~W~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~  328 (745)
                      .|.+|+..+.-.  ++.....+.|.|.+++..|+|.|+|.|.|......+.+.|.|..+|.++..|..+...++..+.|.
T Consensus       270 ~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~e  349 (1381)
T KOG4221|consen  270 KWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFE  349 (1381)
T ss_pred             EEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEe
Confidence            999999887544  566666789999999999999999999997777788899999999999999999999899999999


Q ss_pred             EEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEecc-------
Q psy11701        329 CNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP-------  401 (745)
Q Consensus       329 C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~p-------  401 (745)
                      |.+.+.|.  +.+.|++++..+..  ...+.+..+..+.|..+-..|.|.|.|.+.|..|.....+.+.+...       
T Consensus       350 c~~~g~p~--p~v~w~kNgd~~ip--sdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~  425 (1381)
T KOG4221|consen  350 CPVSGKPI--PTVRWYKNGDRIIP--SDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSD  425 (1381)
T ss_pred             CCCCCCCc--ceEEEEecCcccCc--ccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccC
Confidence            99999864  88999999988775  33344444444899999999999999999999999988888865433       


Q ss_pred             --CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        402 --LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       402 --p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                        +.+|..+.+.. .+.+.+.++|.++ . ..++.+..|.+.|....+.....  +.....+ ...++.+|++.+.|.|+
T Consensus       426 ~~~sap~~lv~~~-~~srfi~~tw~~p-~-~~~g~i~~~~v~~~~~~~~rer~--~~tss~g-~~~tv~nl~p~t~Y~~r  499 (1381)
T KOG4221|consen  426 LLPSAPRDLVANL-VSSRFIQLTWRPP-A-QISGNISTYTVFYKVEGDVRERL--QNTSSPG-IQVTVQNLSPLTMYFFR  499 (1381)
T ss_pred             ccccCCcceeccc-ccceeEEEeecCc-c-ccCCCcceEEEEEecCCchhhhh--eeccCCc-eEEEeeecccceeEEEE
Confidence              34566676665 7888999999953 3 77888999999776554432222  2221233 78899999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccc
Q psy11701        480 VLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI  559 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~  559 (745)
                      |.|.|..|.|..|.++.+.+...  +++. +.+...+..+|.+.|.+|.-+||+|++|++.|...+...+..       +
T Consensus       500 v~A~n~~g~g~sS~pLkV~t~pE--gp~~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~-------~  569 (1381)
T KOG4221|consen  500 VRAKNEAGSGESSAPLKVTTQPE--GPVQ-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELR-------V  569 (1381)
T ss_pred             EeccCcccCCccCCceEEecCCC--CCcc-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEE-------E
Confidence            99999999999999999998665  3344 999999999999999999988999999999999874332221       2


Q ss_pred             cCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCC-----CCCCCCCCCcceeEEEeecCccccCCCc
Q psy11701        560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPD-----NVEGRGSTPNNLVISWTAMPEIEHNAPH  634 (745)
Q Consensus       560 ~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~-----~~~~~~~~p~~~~v~W~~~~~~~~~g~i  634 (745)
                       ..+..+++|.+|.++|+|.|+|.|+|.+|.|..|..+.+.+....+     ++.+...++++|+|+|.+|+....||.|
T Consensus       570 -~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~i  648 (1381)
T KOG4221|consen  570 -ENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQI  648 (1381)
T ss_pred             -ecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceE
Confidence             4567899999999999999999999999999999888776544322     2344456779999999999999999999


Q ss_pred             ceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEE--------------------
Q psy11701        635 FKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIREL--------------------  694 (745)
Q Consensus       635 ~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~--------------------  694 (745)
                      ++|.|+|+......+.... +...+...+.+.+|++.+.|.|++.|.+..|.|+.+....                    
T Consensus       649 tgYkIRy~~~~~~~~~~~t-~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~  727 (1381)
T KOG4221|consen  649 TGYKIRYRKLSREDEVNET-VVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELH  727 (1381)
T ss_pred             EEEEEEecccCccccccee-ecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceee
Confidence            9999999865444433232 2333568889999999999999999977666665443221                    


Q ss_pred             ----------------------------------------EEecCCCcEEEecccccCCcceeEEEEecCcccCCCC-cc
Q psy11701        695 ----------------------------------------IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPS-EI  733 (745)
Q Consensus       695 ----------------------------------------~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s-~~  733 (745)
                                                              +.+++..+.|.|+.|.|+..|.+++.|+|..|.|.+. ++
T Consensus       728 ~~~g~~si~vsW~Pp~~~~~~vrgY~ig~r~g~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~  807 (1381)
T KOG4221|consen  728 VHPGSNSIVVSWTPPPHPNIVVRGYKIGYRPGSGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYES  807 (1381)
T ss_pred             eccCceeEEEEeCCCCChhhhhcceEEeeecccCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeee
Confidence                                                    5557889999999999999999999999999999886 33


Q ss_pred             eEEe
Q psy11701        734 ISFV  737 (745)
Q Consensus       734 ~~~~  737 (745)
                      +.++
T Consensus       808 ~~tR  811 (1381)
T KOG4221|consen  808 VKTR  811 (1381)
T ss_pred             eeec
Confidence            4444

>KOG4221|consensus

Probab=100.00  E-value=1.4e-70  Score=569.75  Aligned_cols=688  Identities=25%  Similarity=0.352  Sum_probs=536.5

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      +..|...+.+..+..|+++.|.|.+.+.|.+.+.|.||+.+|..+.++.... ++.|.|..++..|.|.|+|.|++....
T Consensus       140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lp-sG~L~I~~~qp~d~g~yrc~vt~g~~~  218 (1381)
T KOG4221|consen  140 LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLP-SGALEISGLQPSDTGEYRCVVTGGASQ  218 (1381)
T ss_pred             cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcC-CCcEEecccccCCCceEEEEEecCCcC
Confidence            3446678889999999999999999999999999999999998777766544 457999999999999999999987666


Q ss_pred             eEEEEEEEEEEecC------eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce-eecCceEEEc
Q psy11701        113 AKSYSIDLSVLAAP------YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-KVGPNRITIE  185 (745)
Q Consensus       113 ~~~~~~~l~V~~~p------~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~L~i~  185 (745)
                      ..+..++|+|...|      .|...|....+.+|+++.|.|.+.+.|.|+|.|.+||+.+....  .++ ..+.+.|.|.
T Consensus       219 r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds--~rivl~g~~slliS  296 (1381)
T KOG4221|consen  219 RTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS--YRIVLVGGSSLLIS  296 (1381)
T ss_pred             CccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc--eEEEEecccceEEe
Confidence            66777888888544      36778899999999999999999999999999999999987433  333 3457899999


Q ss_pred             cCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEcc-CceE
Q psy11701        186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRY  264 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~-~~~~  264 (745)
                      +++..|+|.|+|+|.|........+.|.|+. +|.|...|......++.++.|.|.+.+.|.+.+.|+++|..+. ...+
T Consensus       297 ~a~~~dSg~YtC~Atn~~D~idasaev~V~a-~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~  375 (1381)
T KOG4221|consen  297 NATDDDSGKYTCRATNTNDSIDASAEVTVLA-PPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYF  375 (1381)
T ss_pred             ccccccCceEEEEecCCCcccccceEEEEEc-CCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccce
Confidence            9999999999999999777777888889986 7999999999999999999999999999999999999988764 4445


Q ss_pred             EEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc------eeecCCCcEEEecCCeEEEEEEEE-----e
Q psy11701        265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT------HITDQPEDYEVEAGQSATFRCNAV-----S  333 (745)
Q Consensus       265 ~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p------~~~~~p~~~~~~~g~~~~l~C~~~-----~  333 (745)
                      .+..++.|.|..+-..|.|.|+|.+.|..|.....+.+.+-..|      .+...|..+.+..-...-+.|.+.     +
T Consensus       376 ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~  455 (1381)
T KOG4221|consen  376 KIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQIS  455 (1381)
T ss_pred             EecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccC
Confidence            55555669999999999999999999999998888777554332      123334444444334444444443     1


Q ss_pred             cCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCCCCCCceeEEe
Q psy11701        334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV  413 (745)
Q Consensus       334 ~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P~~~~~~~~  413 (745)
                      .+.  ..+.|+........ ....-.....-.+.+.++.....+.++|.|.|..|....+..|.|..+|.+|..+.+.. 
T Consensus       456 g~i--~~~~v~~~~~~~~r-er~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~a-  531 (1381)
T KOG4221|consen  456 GNI--STYTVFYKVEGDVR-ERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYA-  531 (1381)
T ss_pred             CCc--ceEEEEEecCCchh-hhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccc-
Confidence            121  45666643322211 11111112224677888888888888999999999999999999999998887788877 


Q ss_pred             ecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCc
Q psy11701        414 IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE  493 (745)
Q Consensus       414 ~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~  493 (745)
                      .+..++.+.|++|  ...|++|++|++.|...+.    ..++.+ ..+..+++|.+|++.++|.|+|.|+|.+|.|..|.
T Consensus       532 ts~~ti~v~WepP--~~~n~~I~~yk~~ys~~~~----~~~~~~-~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~  604 (1381)
T KOG4221|consen  532 TSPTTILVTWEPP--PFGNGPITGYKLFYSEDDT----GKELRV-ENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSA  604 (1381)
T ss_pred             cCcceEEEEecCC--CCCCCCceEEEEEEEcCCC----CceEEE-ecCccEEEeecCCCccceEEEEEEecCCCCCCCCC
Confidence            8899999999984  4678999999998866622    233445 66889999999999999999999999999999999


Q ss_pred             ceEEeCCCCCCCCCCc-eeEEEcCCceEEEEeeCCC--CCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeec
Q psy11701        494 IISFVTPEGVPGTVQS-LEAIPLGSSAFYLKWVKPE--QPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLA  570 (745)
Q Consensus       494 ~~~~~t~~~~P~~p~~-~~~~~~~~~~i~l~W~~p~--~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  570 (745)
                      .+.+.|..+.|++|++ +++...++++|.|+|.+|.  ..+|.|++|.|+|+.........+.     +..++.+.+.+.
T Consensus       605 ~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t-----~v~~n~~~~l~~  679 (1381)
T KOG4221|consen  605 DITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNET-----VVKGNTTQYLFN  679 (1381)
T ss_pred             ceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCccccccee-----ecccchhhhHhh
Confidence            9999999999986555 9999999999999999986  4688999999999976654333222     224577899999


Q ss_pred             CCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCC--C------CCCcceeEEEeecCccccCCCcceEEEEEe
Q psy11701        571 GLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGR--G------STPNNLVISWTAMPEIEHNAPHFKYRIFWR  642 (745)
Q Consensus       571 ~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~--~------~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~  642 (745)
                      +|+|+|.|.|+|.|.|..|.|++|+++...+...-.+..++  +      ...++|.++|+|++..  +-.+.+|.|.|+
T Consensus       680 ~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~~g~~si~vsW~Pp~~~--~~~vrgY~ig~r  757 (1381)
T KOG4221|consen  680 GLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHVHPGSNSIVVSWTPPPHP--NIVVRGYKIGYR  757 (1381)
T ss_pred             cCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeeeccCceeEEEEeCCCCCh--hhhhcceEEeee
Confidence            99999999999999999999999998855443322222111  1      1237889999987754  335689999998


Q ss_pred             ccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEE----------------------------
Q psy11701        643 RHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIREL----------------------------  694 (745)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~----------------------------  694 (745)
                      +- .+.+.......+...+.|.+..|.+...|.|++.|+.+.|+|.......                            
T Consensus       758 ~g-~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S  836 (1381)
T KOG4221|consen  758 PG-SGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALS  836 (1381)
T ss_pred             cc-cCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccccccc
Confidence            43 3333333344555678999999999999999999966655553322111                            


Q ss_pred             ------------------------------------EEecCCCcEEEecccccCCcceeEEEEec-CcccCCCCcceEEe
Q psy11701        695 ------------------------------------IVNKGESTTTEVDKFVPASKNFARVLAFN-GAYNGPPSEIISFV  737 (745)
Q Consensus       695 ------------------------------------~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~-~~G~g~~s~~~~~~  737 (745)
                                                          ......+.++.+.+|+|++.|+|-|.+.- ..-.|.||..+..+
T Consensus       837 ~tsI~v~w~~~~~~t~~~~~yTVr~~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~  916 (1381)
T KOG4221|consen  837 STSIRVTWADNKDQTTDNRIYTVRWSLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENR  916 (1381)
T ss_pred             cceEEEEEecCCCccccceEEEEEEeecccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeee
Confidence                                                11234566677799999999999999877 44458899999999


Q ss_pred             CCCCCc
Q psy11701        738 TPEGGT  743 (745)
Q Consensus       738 t~~~~~  743 (745)
                      |.+..+
T Consensus       917 tle~~P  922 (1381)
T KOG4221|consen  917 TLELVP  922 (1381)
T ss_pred             ecccCC
Confidence            987553

>KOG3513|consensus

Probab=100.00  E-value=1.2e-69  Score=568.02  Aligned_cols=648  Identities=26%  Similarity=0.400  Sum_probs=491.0

Q ss_pred             CCeeEeeccceeEecCCc--EEEEEEEeecCCCeeEEEECCEecCCCC--CeEeccCCcEEEEccCC-CCCCEEEEEEEE
Q psy11701         33 PKQQYVTRKKEVALRNKK--VELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVE-FSDQGSYTCEVS  107 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~--~~l~C~~~g~p~~~v~W~~~~~~i~~~~--~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~  107 (745)
                      |.+...........+-+.  ++|.|.+.|+|.|++.|+|||..+....  ++.+.  +++|.|.+.. ..|.|.|+|.|+
T Consensus        40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~--~G~lvI~~p~~~~d~G~YqC~As  117 (1051)
T KOG3513|consen   40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVL--GGTLVITNPDAALDQGIYQCFAS  117 (1051)
T ss_pred             ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceeee--cCceEecCCcchhhcceeEEEee
Confidence            555444444445555444  9999999999999999999999887543  34433  6789998887 889999999999


Q ss_pred             eCCeeeEEEEEEEEEEecC-------------------------------------------------------------
Q psy11701        108 NGVGEAKSYSIDLSVLAAP-------------------------------------------------------------  126 (745)
Q Consensus       108 ~~~g~~~~~~~~l~V~~~p-------------------------------------------------------------  126 (745)
                      |..|...+..+.|.....+                                                             
T Consensus       118 N~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyf  197 (1051)
T KOG3513|consen  118 NKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYF  197 (1051)
T ss_pred             cccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEE
Confidence            9999988877776554311                                                             


Q ss_pred             --------------------------------------------eEEe-cCceeEeeCCCeEEEEEEEeecCCCeEEEEe
Q psy11701        127 --------------------------------------------YFTV-EPEFINAAEEETVTFECKASGLPEPEIHWVH  161 (745)
Q Consensus       127 --------------------------------------------~~~~-~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~  161 (745)
                                                                  .+.. .|.......|+.+.|.|-+.|+|.|++.|+|
T Consensus       198 s~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k  277 (1051)
T KOG3513|consen  198 SNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRK  277 (1051)
T ss_pred             eecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEe
Confidence                                                        1111 2334556789999999999999999999999


Q ss_pred             CCEe-ccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEE
Q psy11701        162 NGKP-ISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC  240 (745)
Q Consensus       162 ~g~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C  240 (745)
                      .+.. +.   ...........|.|.++..+|+|.|+|.|.|..|.......|.|.. +|.++..+.+..+..|++++|.|
T Consensus       278 ~~g~~~~---~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a-~P~w~~~~~d~~~~~gs~v~~eC  353 (1051)
T KOG3513|consen  278 VDGKPPP---RRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYA-PPYWLQKPQDTEADTGSNVTLEC  353 (1051)
T ss_pred             CCCCCCC---cceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEec-CchhhcccceeEecCCCCeEEEE
Confidence            7763 33   2223344567999999999999999999999999989999999985 88999999999999999999999


Q ss_pred             EEeecCCCeEEEeeCCEEccCceE---EEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeec-ceeecCCCc
Q psy11701        241 RVFGAPKPEVNWIHNQKELTGGRY---TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH-THITDQPED  316 (745)
Q Consensus       241 ~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~-p~~~~~p~~  316 (745)
                      .+.|.|.+.|+|++|+.++.....   .....+.|.|.+++..|+|.|+|.|.|..|...+.+.|.|... |.+...|..
T Consensus       354 ~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~  433 (1051)
T KOG3513|consen  354 KASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVE  433 (1051)
T ss_pred             EecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccc
Confidence            999999999999999999874433   5567889999999999999999999999999999999999876 666666644


Q ss_pred             E--EEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        317 Y--EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA  394 (745)
Q Consensus       317 ~--~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  394 (745)
                      .  .+..|..+.|.|...+.|.  +.++|.+++..+.  ...++.+..+++|.|.+++.+|.|.|+|.|.|..|......
T Consensus       434 ~~~~a~~g~~v~i~C~~~asP~--p~~~W~k~~~~~~--~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~  509 (1051)
T KOG3513|consen  434 RKVMAVVGGTVTIDCKPFASPK--PKVSWLKGGEKLL--QSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTG  509 (1051)
T ss_pred             eEEEEEeCCeEEEeeccCCCCc--ceEEEEcCCcccc--cCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEE
Confidence            3  5678999999999999885  8899999988444  67788888999999999999999999999999999999999


Q ss_pred             EEEEeccCC---CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCC---CceeE-EEEccCceeEEEe
Q psy11701        395 TLTVQVPLE---APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGE---GSIRE-LIVNKGESTTTEV  467 (745)
Q Consensus       395 ~l~v~~pp~---~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~---~~~~~-~~~~~~~~~~~~i  467 (745)
                      .|.|+.++.   +|.+..+   ....+++|.|+...+....     -.+.|+.++...   ..... ......+...++|
T Consensus       510 ~L~Vkd~tri~~~P~~~~v---~~g~~v~l~Ce~shD~~ld-----~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i  581 (1051)
T KOG3513|consen  510 NLIVKDATRITLAPSNTDV---KVGESVTLTCEASHDPSLD-----ITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTI  581 (1051)
T ss_pred             EEEEecCceEEeccchhhh---ccCceEEEEeecccCCCcc-----eEEEEEECCEEhhccCCCCceEEeCCcCccceEE
Confidence            999986643   5555444   5578899999986544433     222233322210   01111 1111122245667


Q ss_pred             cccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCc
Q psy11701        468 DKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT  547 (745)
Q Consensus       468 ~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~  547 (745)
                      .+..-.....|.|.|......-.....+.++   ++|+||.++++..++.+++.|+|.++++++++|..|.|+++..-..
T Consensus       582 ~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~---gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~  658 (1051)
T KOG3513|consen  582 ANVSLEDSGKYTCVAQTALDSASARADLLVR---GPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPG  658 (1051)
T ss_pred             EeeccccCceEEEEEEEeecchhcccceEEe---cCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCC
Confidence            6644444444444444433332233334554   7888899999999999999999999999999999999999987555


Q ss_pred             ccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeec------ccCCCCCCCCCCCCCcceeEE
Q psy11701        548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV------PFKNPDNVEGRGSTPNNLVIS  621 (745)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~------~~~~~~~~~~~~~~p~~~~v~  621 (745)
                      .|....+....+ .++ .+..+.+|.|..+|+|||.|.|..|.|.||.++...      +...|.++.+-...+++|.|+
T Consensus       659 ~W~~v~~vp~~~-~~~-~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvIt  736 (1051)
T KOG3513|consen  659 KWKAVTTVPGNI-TGD-ESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVIT  736 (1051)
T ss_pred             cceEeeECCCcc-cCc-cceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEE
Confidence            454443211111 222 357788999999999999999999999999877322      223445556667889999999


Q ss_pred             EeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCC
Q psy11701        622 WTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGES  701 (745)
Q Consensus       622 W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~  701 (745)
                      |++.+....||...+|+|.|++.+....|....+.+.+...+++.+.                                 
T Consensus       737 W~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~---------------------------------  783 (1051)
T KOG3513|consen  737 WEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNE---------------------------------  783 (1051)
T ss_pred             eccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCC---------------------------------
Confidence            99999999999999999999998777677776665444333322222                                 


Q ss_pred             cEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCCCC
Q psy11701        702 TTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGG  742 (745)
Q Consensus       702 ~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~~~  742 (745)
                            .-.|.+.|++.|+|+|..|+|+.|+.+.+-+.|+.
T Consensus       784 ------st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~  818 (1051)
T KOG3513|consen  784 ------STEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDE  818 (1051)
T ss_pred             ------CCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCC
Confidence                  23456778888888888888888887777765543

>KOG4222|consensus

Probab=100.00  E-value=1.1e-54  Score=449.25  Aligned_cols=656  Identities=26%  Similarity=0.383  Sum_probs=490.7

Q ss_pred             cccCCCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC----CCCeEeccCCcEEEEccC----CCCC
Q psy11701         27 SQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP----SDRISQGNYGKSLIIKHV----EFSD   98 (745)
Q Consensus        27 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~----~~~~~~~~~~~~L~i~~~----~~~d   98 (745)
                      .+...+|.+ +.-|.++.+.-|+.++|.|.+.|.|.|+++|+|+|+....    .+|+.+. .+..+.+.-+    ...|
T Consensus        26 r~qd~~p~i-iehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp-~gsLf~l~~ahg~~a~~d  103 (1281)
T KOG4222|consen   26 RAQDQPPRI-IEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLP-DGSLFLLRLAHGKKAGHD  103 (1281)
T ss_pred             ccccCCCce-EecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecC-CccEEEEecccCCcccCC
Confidence            455555555 5778999999999999999999999999999999975443    3445432 2332222211    2339


Q ss_pred             CEEEEEEEEeCCeeeEEEEEEEEEEe-cCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCcee
Q psy11701         99 QGSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRK  176 (745)
Q Consensus        99 ~G~Y~C~~~~~~g~~~~~~~~l~V~~-~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~  176 (745)
                      .|.|.|.+.|..|...+....|.|.. .-.|.+.|.+..+..|+.+.|.|.- .|+|.+.+.|.|+|+.+..........
T Consensus       104 ~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~l  183 (1281)
T KOG4222|consen  104 HGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIAL  183 (1281)
T ss_pred             CceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEE
Confidence            99999999999999998877777754 4568889999999999999999987 679999999999999998444344455


Q ss_pred             ecCceEEEccCCCCCCEEEEEEEEeCCceEEEE-EEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeC
Q psy11701        177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN  255 (745)
Q Consensus       177 ~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~  255 (745)
                      +..+.|.|.+++.+|.|.|.|++.|..|..... +.+.|.+ +|.+...+....+..|..+.+.|.+.|.|.+.+.|.++
T Consensus       184 isgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e-~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~  262 (1281)
T KOG4222|consen  184 ISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE-KPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKD  262 (1281)
T ss_pred             ecCCcEEEeccccCCCceeeeeecccccccccccceeeecc-CCccccccccceeecccccccccccCCCCCCceeeecc
Confidence            678899999999999999999999999987766 7888885 89999999999999999999999999999999999999


Q ss_pred             CEEccCceEEEeec-CcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEec
Q psy11701        256 QKELTGGRYTILET-GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD  334 (745)
Q Consensus       256 ~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~  334 (745)
                      +..++-.++.+..+ .+|.|.+++..|.|.|.|.+.|..|...+...+.|+.+|.+...|....+..|..++|.|.+.+.
T Consensus       263 ~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gn  342 (1281)
T KOG4222|consen  263 DPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGN  342 (1281)
T ss_pred             CCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCC
Confidence            99999899988777 79999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeeCCee-ccC-----CCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe---------
Q psy11701        335 PSLKLSIVWLRGSEP-IDF-----ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ---------  399 (745)
Q Consensus       335 ~~~~~~i~W~~~~~~-~~~-----~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~---------  399 (745)
                      |.  +.+.|.+.+.. +-+     ....+..+...+.|.|+++...|.|.|.|...+..|.......+.+.         
T Consensus       343 P~--PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPp  420 (1281)
T KOG4222|consen  343 PP--PAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPP  420 (1281)
T ss_pred             CC--cceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCC
Confidence            97  78999987643 211     12233333444567777777777777777766666654433333322         


Q ss_pred             --------------------------------------------------------------------------------
Q psy11701        400 --------------------------------------------------------------------------------  399 (745)
Q Consensus       400 --------------------------------------------------------------------------------  399 (745)
                                                                                                      
T Consensus       421 p~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges  500 (1281)
T KOG4222|consen  421 PIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGES  500 (1281)
T ss_pred             ceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCccccc
Confidence                                                                                            


Q ss_pred             ------------------------ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEE
Q psy11701        400 ------------------------VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL  455 (745)
Q Consensus       400 ------------------------~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~  455 (745)
                                              ..|.+|....+.. +..++++|+|.+..+ .+.+++.+|.+++.....+.. |...
T Consensus       501 ~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~-v~~~~v~LsW~~~s~-sg~vP~s~yiieafs~~~~et-w~~t  577 (1281)
T KOG4222|consen  501 TWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVN-VSRTSVTLSWQPTSP-SGAVPASGYIIEAFSPDLGET-WQTT  577 (1281)
T ss_pred             ccceeeEhhhcCcccccccCCChhhCCCCCCCCcccc-CCCceEEecccCCCC-CCccccchhHHHHhhhhhccc-cccc
Confidence                                    2233444444445 778999999998543 567889999998876655432 2222


Q ss_pred             EEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceE-EeCCCCCCC---------------CCCce-eEEEcCCc
Q psy11701        456 IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIIS-FVTPEGVPG---------------TVQSL-EAIPLGSS  518 (745)
Q Consensus       456 ~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~-~~t~~~~P~---------------~p~~~-~~~~~~~~  518 (745)
                      -- ......+.|.+|+|...|.|.|+|.|..|.+.++.... ++|.+..+.               +...+ ....+..+
T Consensus       578 a~-~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~as  656 (1281)
T KOG4222|consen  578 AG-RVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNAS  656 (1281)
T ss_pred             cc-ccccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchh
Confidence            11 34677899999999999999999999999988876332 445433221               11111 12344688


Q ss_pred             eEEEEeeCCCCC-CCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCccee
Q psy11701        519 AFYLKWVKPEQP-NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       519 ~i~l~W~~p~~~-~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~  597 (745)
                      ++.+.|..+..+ ..-|.+|+|.|+.... ...++....  +......++.+.+|+|++.|+|.+..+...|..--+...
T Consensus       657 slr~~w~~~kq~~~~~i~g~~I~~r~~~~-~~a~~s~~~--v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS  733 (1281)
T KOG4222|consen  657 SLRLGWTKDKQHGSQYIQGYRISYRSLGS-QLAQWSNAG--VTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPS  733 (1281)
T ss_pred             heeeeeeeecccCcccccceEEEeccCcc-ccccccccc--eeccCCcceeccccCCCccceeeccCccCCCcceecCCc
Confidence            999999988753 3579999999998876 333333222  335667889999999999999999999886543332222


Q ss_pred             eecccCCCCCCC-CCCC----------CCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEec
Q psy11701        598 FYVPFKNPDNVE-GRGS----------TPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLA  666 (745)
Q Consensus       598 ~~~~~~~~~~~~-~~~~----------~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (745)
                      ..++..+....+ +++.          .-+...|+|.+++.+..||++.+|.|...-- +  .                 
T Consensus       734 ~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~-e--~-----------------  793 (1281)
T KOG4222|consen  734 NSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGG-E--K-----------------  793 (1281)
T ss_pred             ccccccccccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecC-c--c-----------------
Confidence            222333332211 1111          1266789999999888899999998854311 0  0                 


Q ss_pred             cCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEE
Q psy11701        667 NQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF  736 (745)
Q Consensus       667 ~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~  736 (745)
                           +.|.+                 ....+....+..|.+|.++..|.|+|.|.|.+|.|+.++++..
T Consensus       794 -----tr~h~-----------------n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~  841 (1281)
T KOG4222|consen  794 -----TRIHI-----------------NKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPI  841 (1281)
T ss_pred             -----ccccc-----------------cccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeee
Confidence                 01111                 1111356677889999999999999999999999998877544

>KOG4222|consensus

Probab=100.00  E-value=1.9e-44  Score=373.66  Aligned_cols=555  Identities=25%  Similarity=0.402  Sum_probs=435.4

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      +.-|-+.|.+..+..|+.++|.|.- .|.|.+.+.|.|||+++.-.  .++.+ ..++.|.|.++...|.|.|.|.+.|.
T Consensus       131 rddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~l-isgG~LlIsnvrksD~GtY~CVatNm  209 (1281)
T KOG4222|consen  131 RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIAL-ISGGNLLISNVRKSDEGTYACVATNM  209 (1281)
T ss_pred             chhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEE-ecCCcEEEeccccCCCceeeeeeccc
Confidence            4556778888889999999999988 78899999999999998722  22332 44668999999999999999999999


Q ss_pred             CeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCC
Q psy11701        110 VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK  189 (745)
Q Consensus       110 ~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~  189 (745)
                      .|+..+...+|.|..+|.|...|.+..+..|..+.+.|++.|.|.+.+.|.+++..+...  ...+...+.+|.|.+++.
T Consensus       210 vG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~--ry~i~~d~qtl~i~r~tp  287 (1281)
T KOG4222|consen  210 VGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRS--RYSILDDTQTLRIDRVTP  287 (1281)
T ss_pred             ccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCcc--ceeeeeccccccccccCC
Confidence            999999999999999999999999999999999999999999999999999988777632  223344558999999999


Q ss_pred             CCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEc---------c
Q psy11701        190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL---------T  260 (745)
Q Consensus       190 ~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~---------~  260 (745)
                      .|.|.|.|.+.|..|....++.+.|+. +|.+...+....+..|..++|.|.+.++|.+.+.|.+.+...         .
T Consensus       288 ~deg~y~C~a~n~vG~l~asa~ltV~a-pP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~  366 (1281)
T KOG4222|consen  288 TDEGTYVCPAENLVGGLEASATLTVQA-PPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSS  366 (1281)
T ss_pred             CcccceeeeccccccccccccceEEec-CcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCc
Confidence            999999999999999999999999986 999999999999999999999999999999999999987542         2


Q ss_pred             CceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe-------ecceeecCCCcEEEecCCeEEEEEEEEe
Q psy11701        261 GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK-------EHTHITDQPEDYEVEAGQSATFRCNAVS  333 (745)
Q Consensus       261 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~-------~~p~~~~~p~~~~~~~g~~~~l~C~~~~  333 (745)
                      +.+..+...++|+|.+++..|.|.|.|...+..+.......+.+.       .+|.+...+.+.....+..+.|.|.+.+
T Consensus       367 ~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg  446 (1281)
T KOG4222|consen  367 NGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATG  446 (1281)
T ss_pred             CccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhC
Confidence            456666777899999999999999999988777765443333332       2344556666667777899999999999


Q ss_pred             cCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEE-------------------
Q psy11701        334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA-------------------  394 (745)
Q Consensus       334 ~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~-------------------  394 (745)
                      .|.  +.+.|.+++..+.... .+..+...+.+.|..+...|.|.|+|.+.+..|....++                   
T Consensus       447 ~P~--p~i~wl~dg~~v~~~d-~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~  523 (1281)
T KOG4222|consen  447 APT--PNISWLKDGCNVMNPD-SRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDP  523 (1281)
T ss_pred             CCC--CCchhhhcccccccCC-cccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCCh
Confidence            987  7899999987765433 444445557899999999999999999987655432111                   


Q ss_pred             -----------EEEEe----------------------------------------------------------------
Q psy11701        395 -----------TLTVQ----------------------------------------------------------------  399 (745)
Q Consensus       395 -----------~l~v~----------------------------------------------------------------  399 (745)
                                 .+.+.                                                                
T Consensus       524 S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa  603 (1281)
T KOG4222|consen  524 SALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRA  603 (1281)
T ss_pred             hhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeec
Confidence                       00110                                                                


Q ss_pred             ------------------ccCCCC---------------CCcee--EEeecCceeEEEEEeCCCCCcceeeeeEEEEEEe
Q psy11701        400 ------------------VPLEAP---------------SNFTL--IQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWT  444 (745)
Q Consensus       400 ------------------~pp~~P---------------~~~~~--~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~  444 (745)
                                        .+..+.               ..++.  .....++++.+.|... ..+....|.+|+|.|+.
T Consensus       604 ~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~-kq~~~~~i~g~~I~~r~  682 (1281)
T KOG4222|consen  604 ENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKD-KQHGSQYIQGYRISYRS  682 (1281)
T ss_pred             cccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeee-cccCcccccceEEEecc
Confidence                              000000               00111  1136778999999984 45556679999999988


Q ss_pred             ccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCC---CCCCCcceEEeCCCCCCC-CCCce---eEEEcCC
Q psy11701        445 EKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAY---NGPPSEIISFVTPEGVPG-TVQSL---EAIPLGS  517 (745)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G---~g~~S~~~~~~t~~~~P~-~p~~~---~~~~~~~  517 (745)
                      .......+....+.......+.+.+|.+++.|+|.+.-+-..|   .|.+|....+.|.+.+|+ +|.++   +...-..
T Consensus       683 ~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~  762 (1281)
T KOG4222|consen  683 LGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNG  762 (1281)
T ss_pred             CccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCC
Confidence            7775556665555456777889999999999999999887644   367777888889899887 45553   4444467


Q ss_pred             ceEEEEeeCCCC--CCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcc
Q psy11701        518 SAFYLKWVKPEQ--PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK  595 (745)
Q Consensus       518 ~~i~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~  595 (745)
                      +++.|+|.+|..  .+|++.+|.|+.............+    . +....+.+|.+|.++..|+|+|.|.+.+|.|+.++
T Consensus       763 Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~tr~h~n~t----~-~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~  837 (1281)
T KOG4222|consen  763 TAGSVSWAPPPADVQNGILQGYKIECSGGEKTRIHINKT----T-NARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSP  837 (1281)
T ss_pred             ceeeEEecCCcccccCCcccceeEEeecCcccccccccc----c-cCCCCceEeccccccceEEEEEeeecCCccCCCCC
Confidence            889999998853  6899999999987654322222221    1 45668899999999999999999999999999887


Q ss_pred             eeeec
Q psy11701        596 YLFYV  600 (745)
Q Consensus       596 ~~~~~  600 (745)
                      .....
T Consensus       838 p~~~~  842 (1281)
T KOG4222|consen  838 PQPIV  842 (1281)
T ss_pred             Ceeee
Confidence            65433

>KOG4194|consensus

Probab=99.97  E-value=2.7e-30  Score=251.35  Aligned_cols=277  Identities=27%  Similarity=0.430  Sum_probs=224.4

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeec--CCCeeEEEECCEecCCC-----CCeEe----------ccCCcEEEEccC
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDGVPINPS-----DRISQ----------GNYGKSLIIKHV   94 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~~~i~~~-----~~~~~----------~~~~~~L~i~~~   94 (745)
                      +.+.+..+|.+.....|+.++|+|.+.+.  .+.++.|.+|++....-     .++..          ....+.|.+.||
T Consensus       502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV  581 (873)
T KOG4194|consen  502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV  581 (873)
T ss_pred             CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence            34445688999999999999999999663  34499999988744321     11111          111246999999


Q ss_pred             CCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEe-ccCCCCCC
Q psy11701         95 EFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP-ISQAPPNP  173 (745)
Q Consensus        95 ~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~-~~~~~~~~  173 (745)
                      +..|+|.|+|.++|..|+..+..+.|+|...|.|+..|.+.++..|+.+.|.|.++|.|.|+|.|.|+|.. .+......
T Consensus       582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRR  661 (873)
T KOG4194|consen  582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERR  661 (873)
T ss_pred             ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhhe
Confidence            99999999999999999999999999999999999999999999999999999999999999999998865 33222111


Q ss_pred             c-eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCC-CeEE
Q psy11701        174 R-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVN  251 (745)
Q Consensus       174 ~-~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~-~~i~  251 (745)
                      . ..-.+..+.|.||+.+|+|.|+|.|.|..|..+..+.+.|.+ .|.+..+.....+..|+.+.|.|.+.+.|. +.+.
T Consensus       662 l~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e-~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~  740 (873)
T KOG4194|consen  662 LHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE-TPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLE  740 (873)
T ss_pred             eeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec-CCcccccccceEEEecceEEEEEecCCCCCCcccc
Confidence            1 222567899999999999999999999999999999999986 677777888889999999999999999877 8999


Q ss_pred             EeeCCEEccCce-EEEee-cCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecce
Q psy11701        252 WIHNQKELTGGR-YTILE-TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH  309 (745)
Q Consensus       252 W~~~~~~~~~~~-~~~~~-~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~  309 (745)
                      |+|+++++.-.. ..... +.-|.+.+...+|+|.|+|...+..|.......+.+...+.
T Consensus       741 W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~  800 (873)
T KOG4194|consen  741 WFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKK  800 (873)
T ss_pred             ccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCC
Confidence            999988875332 22222 22478888889999999999999999877776666655443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.96  E-value=9.7e-27  Score=229.75  Aligned_cols=245  Identities=27%  Similarity=0.385  Sum_probs=179.5

Q ss_pred             ceeEecCCcEEEEEEE-----eecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701         42 KEVALRNKKVELFCIF-----GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY  116 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~-----~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~  116 (745)
                      ...+.+|+.+.|.|.+     .|.|.++++|+|+|...   .+......+..|.|.++..+|+|.|+|.+.|..|... .
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~-~  110 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDM-M  110 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceE-E
Confidence            3456789999999997     68888999999998532   2333233455688999999999999999999877655 5


Q ss_pred             EEEEEEEe--cCeEEecCceeEeeCCCeEEEEEE-----EeecCCCeEEEEeCCEeccCCCCCCcee-ecCceEEEccCC
Q psy11701        117 SIDLSVLA--APYFTVEPEFINAAEEETVTFECK-----ASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRITIENLR  188 (745)
Q Consensus       117 ~~~l~V~~--~p~~~~~~~~~~v~~G~~~~l~C~-----~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~i~~v~  188 (745)
                      ++.|.|..  +|.+...+....+.+|+.+.|.|.     ..+.|.+.++|++++. +.    ..+.. ..++.|.|.+++
T Consensus       111 s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~----~~r~~~~~~~~L~i~~v~  185 (326)
T PHA02785        111 SLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR----NKRLKQRTPGIITIEDVR  185 (326)
T ss_pred             EEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC----CcceEecCCCeEEEeecC
Confidence            56777754  333433344455779999999997     2456888999998653 22    22332 235789999999


Q ss_pred             CCCCEEEEEEEEeCCceEEE----EEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCC---CeEEEeeCCEEc
Q psy11701        189 KSDTGNYGCNATNSLGYVYK----DVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPK---PEVNWIHNQKEL  259 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~~~~----~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~  259 (745)
                      .+|+|.|+|.+.|..|....    .+.|.|..  .+|.+ ..|....+..|+.++|.|.+.+.|.   +.+.|++||..+
T Consensus       186 ~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i  264 (326)
T PHA02785        186 KNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYY  264 (326)
T ss_pred             hhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEEC
Confidence            99999999999998776543    23444432  24443 4556777888999999999998876   379999999877


Q ss_pred             cCc------eEEEe-----------ecCcEEEcccCCCCCEEEEEEEEeCCceE
Q psy11701        260 TGG------RYTIL-----------ETGDLKITDVAFADSGEYTCFARNKLGTA  296 (745)
Q Consensus       260 ~~~------~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~  296 (745)
                      ...      ++...           ..+.|.|.+++.+|.|.|+|.|.|..+..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        265 EEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             CCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence            421      22211           13469999999999999999999987443

>KOG4194|consensus

Probab=99.96  E-value=2.1e-27  Score=231.37  Aligned_cols=272  Identities=26%  Similarity=0.447  Sum_probs=221.4

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEee--cCCCeEEEEeCCEeccCCCCC--Cce------------eecCceEEEccCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASG--LPEPEIHWVHNGKPISQAPPN--PRR------------KVGPNRITIENLR  188 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~g~~~~~~~~~--~~~------------~~~~~~L~i~~v~  188 (745)
                      .|.+..+|.......|+.++|+|.+.+  ..+.++.|.++.+........  .++            ....+.|.+.+|+
T Consensus       503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt  582 (873)
T KOG4194|consen  503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT  582 (873)
T ss_pred             CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence            567788888888899999999999966  344599999988744321111  000            0112479999999


Q ss_pred             CCCCEEEEEEEEeCCceEEEE-EEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEE-cc---Cce
Q psy11701        189 KSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE-LT---GGR  263 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~-~~---~~~  263 (745)
                      ..|.|.|+|+++|..|...+. +.+.|. ..|.|...|.+.++..|+.+.|.|.+.|.|.|.|.|.++|.. .+   ..|
T Consensus       583 ~td~grYQCVvtN~FGStysqk~KltV~-~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRR  661 (873)
T KOG4194|consen  583 FTDEGRYQCVVTNHFGSTYSQKAKLTVN-QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERR  661 (873)
T ss_pred             cccCceEEEEEecccCcchhheeEEEee-ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhhe
Confidence            999999999999999987654 778876 489999999999999999999999999999999999998876 32   234


Q ss_pred             EEE-eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEE
Q psy11701        264 YTI-LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV  342 (745)
Q Consensus       264 ~~~-~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~  342 (745)
                      .++ ..+..+.|.++..+|.|.|+|.|.|..|..++.+.+.|.+.|.+..+..+..+..|+.+.|.|.+.+.|. ++.+.
T Consensus       662 l~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a-~pr~~  740 (873)
T KOG4194|consen  662 LHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPA-DPRLE  740 (873)
T ss_pred             eeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCC-Ccccc
Confidence            444 3455799999999999999999999999999999999999998888888889999999999999998876 47899


Q ss_pred             EeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        343 WLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ  399 (745)
Q Consensus       343 W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~  399 (745)
                      |++++.++..... +.....+.-+.+......|.|.|+|...|..|.......+.+.
T Consensus       741 W~k~d~pil~t~r-h~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~  796 (873)
T KOG4194|consen  741 WFKEDKPILITER-HTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY  796 (873)
T ss_pred             ccCCCCceEEeec-ccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence            9999988875432 2233455578888888999999999999999977666655543

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.95  E-value=4.3e-25  Score=218.06  Aligned_cols=249  Identities=20%  Similarity=0.315  Sum_probs=183.8

Q ss_pred             EeeCCCeEEEEEEE-----eecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        136 NAAEEETVTFECKA-----SGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       136 ~v~~G~~~~l~C~~-----~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      ...+|+.+.|.|.+     .|.|.++++|+|+|....     ..... ....|.|.++..+|+|.|+|.++|..|....+
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~-----~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s  111 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND-----RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMS  111 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc-----eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEE
Confidence            45689999999987     678888999999985322     11122 23358899999999999999999999888888


Q ss_pred             EEEEEeecC-CeeeeCCCceEEecCceEEEEEE-----EeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCCCE
Q psy11701        210 VYVNVLAHA-PEITEAPKDEYTVDGKTVVLTCR-----VFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSG  283 (745)
Q Consensus       210 ~~l~v~~~~-p~~~~~~~~~~v~~g~~~~l~C~-----~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  283 (745)
                      +.|.|.... +.+...+....+.+|..+.|.|.     ..+.+.+.+.|+++. .+...++....++.|.|.+++.+|.|
T Consensus       112 ~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~~~r~~~~~~~~L~i~~v~~~d~G  190 (326)
T PHA02785        112 LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLRNKRLKQRTPGIITIEDVRKNDAG  190 (326)
T ss_pred             EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccCCcceEecCCCeEEEeecChhhCe
Confidence            888886533 33333344456778999999997     235678899998864 35556666666678999999999999


Q ss_pred             EEEEEEEeCCceEE----EEEEEEEeec--ceeecCCCcEEEecCCeEEEEEEEEecCCC-CcEEEEeeCCeeccCCC--
Q psy11701        284 EYTCFARNKLGTAQ----GSGSLTVKEH--THITDQPEDYEVEAGQSATFRCNAVSDPSL-KLSIVWLRGSEPIDFES--  354 (745)
Q Consensus       284 ~Y~C~~~n~~g~~~----~~~~l~v~~~--p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~-~~~i~W~~~~~~~~~~~--  354 (745)
                      .|+|.+.|..|...    ..+.|.|..+  |.....|....+..|+.+.|.|.+.+.|.+ .+.+.|++++..+....  
T Consensus       191 ~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~  270 (326)
T PHA02785        191 YYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDED  270 (326)
T ss_pred             EEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCC
Confidence            99999999877643    2344555432  222345667777889999999999988753 25899999998775321  


Q ss_pred             -CCeEEEc-----------CCeEEEEecCCCCCCEEEEEEEEeCCceE
Q psy11701        355 -EPRFVQS-----------NDYSLTVTKSSELDSGQYTCRAQTELDFI  390 (745)
Q Consensus       355 -~~~~~~~-----------~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  390 (745)
                       ..++...           ....|.|.++..+|.|.|+|.|.|..|..
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        271 GDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             CceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence             1122111           13579999999999999999999988543

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.84  E-value=1.5e-19  Score=166.50  Aligned_cols=153  Identities=20%  Similarity=0.287  Sum_probs=115.2

Q ss_pred             cceeEecCCcEEEEEEEeecC-----------CCeeEEEECCEec--C-CCCC--------eEeccCCcEEEEccCCCCC
Q psy11701         41 KKEVALRNKKVELFCIFGGTP-----------LPQTIWSKDGVPI--N-PSDR--------ISQGNYGKSLIIKHVEFSD   98 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p-----------~~~v~W~~~~~~i--~-~~~~--------~~~~~~~~~L~i~~~~~~d   98 (745)
                      ....+.+|+++.|.|.+.+.|           .+.|+|+|++...  . .+.+        ......+.+|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            456789999999999987644           3489999987642  1 1111        1112235689999999999


Q ss_pred             CEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEee-----cCCCeEEEEeCCEeccCCCCCC
Q psy11701         99 QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG-----LPEPEIHWVHNGKPISQAPPNP  173 (745)
Q Consensus        99 ~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~g~~~~~~~~~~  173 (745)
                      +|.|+|.|.|..+... ..+.|.|..++      ....+.+|+++.|.|.+.+     .|.++++|+|+|+.+....   
T Consensus       110 sG~Y~C~a~N~~~~~~-~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~---  179 (227)
T PHA02826        110 EGIYICTISSGNICEE-STIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD---  179 (227)
T ss_pred             CEEEEEEEEECCcceE-EEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC---
Confidence            9999999999776544 66777774332      3446788999999999853     3578999999999987332   


Q ss_pred             cee--ecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        174 RRK--VGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       174 ~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      +..  ...+.|.|.+++.+|+|.|+|.|+...
T Consensus       180 r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        180 RIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             CEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            332  245689999999999999999999764

>KOG3515|consensus

Probab=99.81  E-value=4e-18  Score=176.56  Aligned_cols=299  Identities=20%  Similarity=0.278  Sum_probs=196.2

Q ss_pred             eEecCCcEEEEEEEeecC-CCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         44 VALRNKKVELFCIFGGTP-LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        44 ~v~~G~~~~l~C~~~g~p-~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      -+..|++|.|.|.+.++| ...+.|++.++.+.  .+... ....+|.......+.-+.|.|++.+..+........+.|
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v   94 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYAT-IADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDV   94 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCcccc--ccccc-ccCCceeeecchhhhhhhhhhhhcccccCceecceeecc
Confidence            789999999999997775 55999999988776  22221 223467777777777889999999998887778888999


Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEe--ecCCCeEEEEeCCEeccCCCCC---------CceeecCceEEEccCCCCC
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKAS--GLPEPEIHWVHNGKPISQAPPN---------PRRKVGPNRITIENLRKSD  191 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~--~~p~~~v~W~~~g~~~~~~~~~---------~~~~~~~~~L~i~~v~~~d  191 (745)
                      ..+|.-...........+..+.+.|.+.  +.|.+.+.|..++.........         .........|.+...+.++
T Consensus        95 ~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~  174 (741)
T KOG3515|consen   95 DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKAD  174 (741)
T ss_pred             ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecC
Confidence            9888765555566677899999999664  4677899999988765432211         1111234578888899999


Q ss_pred             CEEEEEEEEeC---CceEEEEEEEEEeecCCeeeeC--CCceEEecCceEEEEEEEe-ecCCCeEEEeeCCEEccCc-eE
Q psy11701        192 TGNYGCNATNS---LGYVYKDVYVNVLAHAPEITEA--PKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKELTGG-RY  264 (745)
Q Consensus       192 ~G~Y~C~~~~~---~g~~~~~~~l~v~~~~p~~~~~--~~~~~v~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~-~~  264 (745)
                      .|.|+|.+.+.   .+.......+.+......+...  .......+|+.+.|.|.+. ++|.+.++|+++....... ..
T Consensus       175 ~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~  254 (741)
T KOG3515|consen  175 NGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLL  254 (741)
T ss_pred             CceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcc
Confidence            99999999984   3333344455554333333322  2224677899999999865 4588899999987655332 11


Q ss_pred             EEeecC-----cEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecce-eecCCCcEEEecCCeEEEEEEEEecCCCC
Q psy11701        265 TILETG-----DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH-ITDQPEDYEVEAGQSATFRCNAVSDPSLK  338 (745)
Q Consensus       265 ~~~~~~-----~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~-~~~~p~~~~~~~g~~~~l~C~~~~~~~~~  338 (745)
                      ....++     ++.+..-..++.-...|.+.|.   ..+...+.+..++. .+..+....+..|+...+.|...+..+ .
T Consensus       255 ~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~---~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p-~  330 (741)
T KOG3515|consen  255 SQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNL---LAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKP-P  330 (741)
T ss_pred             cCCCCCCcccccccccccccchhhhhhccccCc---cccceeeecccccccccccCcccccccccccccceeccCCCC-c
Confidence            111111     2333222333344667999882   12222233333221 223333344778889999997776544 4


Q ss_pred             cEEEEeeCCee
Q psy11701        339 LSIVWLRGSEP  349 (745)
Q Consensus       339 ~~i~W~~~~~~  349 (745)
                      ..+.|+++...
T Consensus       331 ~~i~w~~~~~~  341 (741)
T KOG3515|consen  331 AHIAWYKDTKM  341 (741)
T ss_pred             cceeeeccCcc
Confidence            78999985443

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.79  E-value=6.6e-18  Score=155.59  Aligned_cols=154  Identities=16%  Similarity=0.205  Sum_probs=115.7

Q ss_pred             ceeEeeCCCeEEEEEEEeecC-----------CCeEEEEeCCEec--cCC-CC-------CCceeecCceEEEccCCCCC
Q psy11701        133 EFINAAEEETVTFECKASGLP-----------EPEIHWVHNGKPI--SQA-PP-------NPRRKVGPNRITIENLRKSD  191 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~~p-----------~~~v~W~~~g~~~--~~~-~~-------~~~~~~~~~~L~i~~v~~~d  191 (745)
                      ....+.+|+++.|.|.+.+.+           .+.+.|+|++...  ... ..       ..+.....+.|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            455678999999999986643           3489999988652  110 00       01112235689999999999


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEee-----cCCCeEEEeeCCEEccC-ceEE
Q psy11701        192 TGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG-----APKPEVNWIHNQKELTG-GRYT  265 (745)
Q Consensus       192 ~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~-----~p~~~i~W~~~~~~~~~-~~~~  265 (745)
                      +|.|+|.|+|..+.....+.|.|.. +      +....+.+|++++|.|.+.+     .|.+.++|++++..+.. .++.
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~-~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~  182 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDS-G------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ  182 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEec-C------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence            9999999999888877778887742 1      22446678999999999763     35689999999998853 3444


Q ss_pred             Eee-cCcEEEcccCCCCCEEEEEEEEeCC
Q psy11701        266 ILE-TGDLKITDVAFADSGEYTCFARNKL  293 (745)
Q Consensus       266 ~~~-~~~l~i~~~~~~d~G~Y~C~~~n~~  293 (745)
                      ... .+.|.|.+++.+|+|.|+|.|....
T Consensus       183 ~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        183 LRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            433 3479999999999999999998754

>KOG0196|consensus

Probab=99.72  E-value=3.6e-16  Score=159.00  Aligned_cols=201  Identities=22%  Similarity=0.355  Sum_probs=152.9

Q ss_pred             EEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCcee----EEEE----ccCceeEE
Q psy11701        394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIR----ELIV----NKGESTTT  465 (745)
Q Consensus       394 ~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~----~~~~----~~~~~~~~  465 (745)
                      .......||.+|.++...  ++.+++.|.|.+|.. .++-.-..|.+.++.-......-.    .+..    ....+...
T Consensus       324 ~~mpCT~PPSaP~nlis~--vn~Ts~~L~W~~P~d-~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V  400 (996)
T KOG0196|consen  324 PSMPCTRPPSAPRNLISN--VNGTSLILEWSPPAD-TGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSV  400 (996)
T ss_pred             CCCCCCCCCCccceeeee--cccceEEEEecCCcc-cCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceE
Confidence            445567899999998775  789999999999643 333345668887765442211100    1111    13366788


Q ss_pred             EecccccCcceeEEEEEecCCCCC----CCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEE
Q psy11701        466 EVDKFVPASKNFARVLAFNGAYNG----PPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKY  541 (745)
Q Consensus       466 ~i~~L~~~~~Y~~~V~a~n~~G~g----~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~  541 (745)
                      ++.+|.+.+.|.|.|.|+|....-    .....+.++|....|+++..++....+.++|+|+|..|..++|.|..|.|+|
T Consensus       401 ~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky  480 (996)
T KOG0196|consen  401 TVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKY  480 (996)
T ss_pred             EEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeEEEEE
Confidence            999999999999999999975442    2234678999999999999999999999999999999999999999999999


Q ss_pred             EEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccC
Q psy11701        542 QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFK  603 (745)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~  603 (745)
                      .+...+... ..     ......+..+|.+|+|++.|-|+|+|.+.+|.|+.|....+.+..
T Consensus       481 ~ek~~~e~~-~~-----~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~  536 (996)
T KOG0196|consen  481 YEKDEDERS-YS-----TLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLP  536 (996)
T ss_pred             eeccccccc-ee-----EEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecC
Confidence            987643211 11     114456889999999999999999999999999999877555433

>KOG0196|consensus

Probab=99.71  E-value=4.8e-16  Score=158.09  Aligned_cols=193  Identities=20%  Similarity=0.304  Sum_probs=136.1

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCC-ceeeEEEEEEEcCCcc-----cCCcccccccccCCCcceeeecCCCCC
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTK-----VGPLLERLPYISDPTTTSAKLAGLEPS  575 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~L~p~  575 (745)
                      .+|++|.++... ++.+++.|.|.+|.+.|| .-..|.|.++.-....     .+..+...+....-+.++..+.+|.|.
T Consensus       330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah  408 (996)
T KOG0196|consen  330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH  408 (996)
T ss_pred             CCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence            678999999877 799999999999998776 4567888876543221     111121111111335678999999999


Q ss_pred             ccEEEEEEEEecCCC-CCCcceeeec---ccC-CC---CCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCC
Q psy11701        576 TKYRIHLAGYTKAGD-GAESKYLFYV---PFK-NP---DNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTG  647 (745)
Q Consensus       576 t~Y~~~V~a~n~~G~-g~~S~~~~~~---~~~-~~---~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~  647 (745)
                      +.|+|.|.|.|.... ++.......+   +.. .+   ..+......++++.|+|..|  +..||.|.-|.|+|.+...+
T Consensus       409 ~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p--~~png~ildYEvky~ek~~~  486 (996)
T KOG0196|consen  409 TNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEP--DQPNGVILDYEVKYYEKDED  486 (996)
T ss_pred             cccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCC--CCCCCcceeEEEEEeecccc
Confidence            999999999998643 3332221111   111 11   11233446789999999654  45788899999999876321


Q ss_pred             CCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCccc
Q psy11701        648 EAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYN  727 (745)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~  727 (745)
                      .                       ..|.                    ++....+...|.+|+|++.|.|+|+|.+.+|.
T Consensus       487 e-----------------------~~~~--------------------~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~  523 (996)
T KOG0196|consen  487 E-----------------------RSYS--------------------TLKTKTTTATITGLKPGTVYVFQVRARTAAGY  523 (996)
T ss_pred             c-----------------------ccee--------------------EEecccceEEeeccCCCcEEEEEEEEecccCC
Confidence            1                       1122                    22457788999999999999999999999999


Q ss_pred             CCCCcceEEeCCC
Q psy11701        728 GPPSEIISFVTPE  740 (745)
Q Consensus       728 g~~s~~~~~~t~~  740 (745)
                      |+.|.+.+|+|..
T Consensus       524 G~~S~~~~fqT~~  536 (996)
T KOG0196|consen  524 GPYSGKHEFQTLP  536 (996)
T ss_pred             CCCCCceeeeecC
Confidence            9999999999954

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.64  E-value=3.2e-15  Score=118.86  Aligned_cols=92  Identities=26%  Similarity=0.339  Sum_probs=80.7

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      .|...+++..+.+|+.+.|.|.+.|.|.+++.|+|||++|..+.++...  ...+.|+|.+++.+|+|.|+|.|.|..|.
T Consensus         2 ~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~   81 (98)
T cd05762           2 QIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGS   81 (98)
T ss_pred             ceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCc
Confidence            3557788999999999999999999999999999999999877666554  34568999999999999999999999999


Q ss_pred             eEEEEEEEEEEecCe
Q psy11701        113 AKSYSIDLSVLAAPY  127 (745)
Q Consensus       113 ~~~~~~~l~V~~~p~  127 (745)
                      .. .++.|.|...|.
T Consensus        82 ~~-~~~~l~V~~~P~   95 (98)
T cd05762          82 RQ-AQVNLTVVDKPD   95 (98)
T ss_pred             ee-EEEEEEEecCCC
Confidence            88 679999988763

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.63  E-value=3.7e-15  Score=116.18  Aligned_cols=87  Identities=32%  Similarity=0.479  Sum_probs=74.4

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      |+.+...+.+..+.+|++++|.|.+.|.|.|.++|+|++.++....++.  ..+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   78 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--MSGAVLKIFNIQPEDEGTYECEAENIKGK   78 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--cCCCEEEECcCChhhCEEEEEEEEcCCCc
Confidence            4456678889999999999999999999999999999998887654444  34568999999999999999999999998


Q ss_pred             eEEEEEEEEE
Q psy11701        113 AKSYSIDLSV  122 (745)
Q Consensus       113 ~~~~~~~l~V  122 (745)
                      .. ..+.|.|
T Consensus        79 ~~-~~~~l~V   87 (88)
T cd05851          79 DK-HQARVYV   87 (88)
T ss_pred             eE-EEEEEEE
Confidence            76 5677766

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.60  E-value=1e-14  Score=113.67  Aligned_cols=88  Identities=27%  Similarity=0.378  Sum_probs=77.1

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+...   .+....++.|.|.++..+|+|.|+|.|.|..|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   77 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT---AEISMSGAVLKIFNIQPEDEGTYECEAENIKG   77 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC---CEEecCCCEEEECcCChhhCEEEEEEEEcCCC
Confidence            578889999999999999999999999999999999999877532   23444567899999999999999999999999


Q ss_pred             eEEEEEEEEEe
Q psy11701        205 YVYKDVYVNVL  215 (745)
Q Consensus       205 ~~~~~~~l~v~  215 (745)
                      .....+.|.|.
T Consensus        78 ~~~~~~~l~V~   88 (88)
T cd05851          78 KDKHQARVYVQ   88 (88)
T ss_pred             ceEEEEEEEEC
Confidence            99988888763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.57  E-value=2.7e-14  Score=113.60  Aligned_cols=91  Identities=22%  Similarity=0.341  Sum_probs=78.4

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee--ecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK--VGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      |.|...|.+..+..|+.+.|.|.+.|.|.+.+.|+|+|+.+...... ...  ...+.|.|.++..+|+|.|+|.|.|..
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~-~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~   79 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGI-KIENTENSSKLTITEGQQEHCGCYTLEVENKL   79 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcE-EEEecCCeeEEEECCCChhhCEEEEEEEEcCC
Confidence            56788899999999999999999999999999999999999743321 111  235789999999999999999999999


Q ss_pred             ceEEEEEEEEEeec
Q psy11701        204 GYVYKDVYVNVLAH  217 (745)
Q Consensus       204 g~~~~~~~l~v~~~  217 (745)
                      |.....+.|.|...
T Consensus        80 G~~~~~~~l~V~~~   93 (98)
T cd05762          80 GSRQAQVNLTVVDK   93 (98)
T ss_pred             CceeEEEEEEEecC
Confidence            99999999999864

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.57  E-value=3e-14  Score=111.35  Aligned_cols=84  Identities=29%  Similarity=0.415  Sum_probs=73.8

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY  116 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~  116 (745)
                      ...+.+..+.+|++++|.|.+.|. .|.+.|+|++..+.. .++.+...+++|+|.+++.+|+|.|+|.|.|..|...+.
T Consensus         7 ~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~   84 (91)
T cd05740           7 NNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSD   84 (91)
T ss_pred             ccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEee
Confidence            445567789999999999999999 899999999998864 456666667799999999999999999999999998888


Q ss_pred             EEEEEE
Q psy11701        117 SIDLSV  122 (745)
Q Consensus       117 ~~~l~V  122 (745)
                      .+.|.|
T Consensus        85 ~~~L~V   90 (91)
T cd05740          85 PYILNV   90 (91)
T ss_pred             eEEEEe
Confidence            888877

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>KOG3515|consensus

Probab=99.55  E-value=1.4e-13  Score=143.14  Aligned_cols=412  Identities=17%  Similarity=0.142  Sum_probs=264.1

Q ss_pred             cccCCCCCeeEeeccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCCCCCeE-ec-----cCCcEEEEccCCCCCC
Q psy11701         27 SQNRHAPKQQYVTRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRIS-QG-----NYGKSLIIKHVEFSDQ   99 (745)
Q Consensus        27 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~-~~-----~~~~~L~i~~~~~~d~   99 (745)
                      .+.+.+|....+.+....+..|+...+.|.. .++|...+.|+++.+......... -+     .....+........|.
T Consensus       294 tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~  373 (741)
T KOG3515|consen  294 TAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDG  373 (741)
T ss_pred             eecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcC
Confidence            3445677777788888889999999999998 445777999999766554322211 11     1112466677788999


Q ss_pred             EEEEEEEEeCCeee-EEEEEEEEEEecCeEEec-CceeEeeCCCeEEEEEEEeec-CCCeEEEEeCCEeccCCCCCCcee
Q psy11701        100 GSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTVE-PEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRK  176 (745)
Q Consensus       100 G~Y~C~~~~~~g~~-~~~~~~l~V~~~p~~~~~-~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~~~~~~~~~~  176 (745)
                      |.|+|.+.+..... .+..+.+.+..+|.+... .......+++.....-.+.+. +.+.+.|.+.+..+..........
T Consensus       374 g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v  453 (741)
T KOG3515|consen  374 GQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRV  453 (741)
T ss_pred             ceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEe
Confidence            99999998765322 234566777777766544 333444555554444333354 445999999988887544333333


Q ss_pred             ecCc-eEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC--eEEEe
Q psy11701        177 VGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP--EVNWI  253 (745)
Q Consensus       177 ~~~~-~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~--~i~W~  253 (745)
                      .... .+.+-++.+.|.|.|.|.+.|..|.......+.+.. .|.+...........|.++.+.|.....+.-  .+.|.
T Consensus       454 ~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~-sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~  532 (741)
T KOG3515|consen  454 GAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHT-SPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEP  532 (741)
T ss_pred             eccccccccceeeeccCCcceeeeccCCCceeeEEeecccc-CCcccccccccccCCCCcccceeeccccccchhhhccc
Confidence            3333 334677999999999999999999888777766665 3444333334445567779999998776543  58899


Q ss_pred             eCCEEccCc------eEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEE-ec-CCeE
Q psy11701        254 HNQKELTGG------RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV-EA-GQSA  325 (745)
Q Consensus       254 ~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~-~~-g~~~  325 (745)
                      +.+....+.      .......+.+.+......-++.|.|.+.+..-.......+.+..++.....+..... .. ...+
T Consensus       533 r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~a  612 (741)
T KOG3515|consen  533 RSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNA  612 (741)
T ss_pred             ccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccCCceeeeccCcccc
Confidence            887655321      222334456777777767789999999882222334444555444444333333332 22 2378


Q ss_pred             EEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEE-----cCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEec
Q psy11701        326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ-----SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV  400 (745)
Q Consensus       326 ~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~  400 (745)
                      +..|.+.+.+.  ..+.|.+...........+...     .+..+..+.+....+.|...|.+.|.+|....+..+.-..
T Consensus       613 s~~~~a~~~~~--~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t  690 (741)
T KOG3515|consen  613 SDDCVASGVPS--TSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGT  690 (741)
T ss_pred             cccceeccccc--ceeecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhcceeeecccCCCccccceecCCc
Confidence            99997777775  7899998876633211111110     1112233333333444559999999999988887777777


Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEec
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTE  445 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~  445 (745)
                      .+..|.|+.+.. .....+.|.|.+.-   -.|-...|.+.|...
T Consensus       691 ~~~~~~n~~~~~-~~~~~i~l~~~p~f---dgg~~q~f~~~~~~~  731 (741)
T KOG3515|consen  691 ASVGPINLTYDN-LTYSTISLEWMPGF---DGGLQQRFFLKYYDL  731 (741)
T ss_pred             CCCCccceEeee-eeeeeeceeeeecc---ccccccceeeehhhc
Confidence            788999999877 88889999999853   233445566666443

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.55  E-value=8e-14  Score=108.52  Aligned_cols=86  Identities=21%  Similarity=0.356  Sum_probs=74.0

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE-CCEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~-~~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      ..+.+++..+.+|+++.|.|.+.|.|. .++|++ ++.++....++.+...+  ..|.|.++..+|+|.|+|.|.|..|.
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   81 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ   81 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence            356788889999999999999999998 999998 57788777777765444  48999999999999999999999998


Q ss_pred             eEEEEEEEEE
Q psy11701        113 AKSYSIDLSV  122 (745)
Q Consensus       113 ~~~~~~~l~V  122 (745)
                      ...+++.|.|
T Consensus        82 ~~~~~i~l~~   91 (92)
T cd05866          82 TQEATVVLEI   91 (92)
T ss_pred             EEEEEEEEEE
Confidence            8778888776

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.54  E-value=9.2e-14  Score=109.93  Aligned_cols=87  Identities=25%  Similarity=0.460  Sum_probs=74.0

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEecc--CCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      |..++..|++..+.+|+++.|.|.+.|.|.|.+.|+|+|..+....++.+..  ..++|.|.+++.+|+|.|+|.|.|..
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   82 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE   82 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence            5566688899999999999999999999999999999999998766665543  34689999999999999999999999


Q ss_pred             eeeEEEEEEE
Q psy11701        111 GEAKSYSIDL  120 (745)
Q Consensus       111 g~~~~~~~~l  120 (745)
                      |... ..+.|
T Consensus        83 G~~~-~~~~l   91 (92)
T cd05747          83 GKQE-AQFTL   91 (92)
T ss_pred             CCEe-EEEEe
Confidence            8766 44444

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.54  E-value=6.6e-14  Score=111.19  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=68.1

Q ss_pred             cceeEecCCcEEEEEEEee-cCCCeeEEEECCEecCCCCCeE-ecc------CCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         41 KKEVALRNKKVELFCIFGG-TPLPQTIWSKDGVPINPSDRIS-QGN------YGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~-~~~------~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      ..+.+.+|+++.|.|.+.| .|+|.+.|+|||.+|....... ...      .++.|.|..+..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            5678999999999999999 8999999999999998544422 211      2468999999999999999999999997


Q ss_pred             eEEEEEEEEEE
Q psy11701        113 AKSYSIDLSVL  123 (745)
Q Consensus       113 ~~~~~~~l~V~  123 (745)
                      .. ..+.|.|.
T Consensus        91 ~~-~t~~L~V~  100 (101)
T cd04975          91 KS-LTFELYVN  100 (101)
T ss_pred             EE-EEEEEEEE
Confidence            66 66777764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.54  E-value=1.1e-13  Score=108.55  Aligned_cols=87  Identities=33%  Similarity=0.509  Sum_probs=73.3

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      |..+...|.+..+.+|++++|.|.+.|.|.|.++|+|++..+.......  ..+..|.|.+++.+|+|.|+|.+.|..|.
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   78 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MSGAVLKIPNIQFEDEGTYECEAENIKGK   78 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--EeCCEEEECCCCcccCEEEEEEEEECCCc
Confidence            5667788899999999999999999999999999999887765444333  34568999999999999999999999998


Q ss_pred             eEEEEEEEEE
Q psy11701        113 AKSYSIDLSV  122 (745)
Q Consensus       113 ~~~~~~~l~V  122 (745)
                      .. ..+.|.|
T Consensus        79 ~~-~~~~l~V   87 (88)
T cd04968          79 DT-HQGRIYV   87 (88)
T ss_pred             EE-EEEEEEE
Confidence            66 5566665

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.53  E-value=9.2e-14  Score=109.81  Aligned_cols=82  Identities=28%  Similarity=0.372  Sum_probs=68.5

Q ss_pred             ccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccC---CcEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701         40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY---GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY  116 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~  116 (745)
                      |+...+.+|+++.|.|.+.|.|.|++.|+|++.++....++.+...   ..+|.|.+++.+|+|.|+|.|.|..|... .
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~   86 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET-V   86 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce-E
Confidence            4567899999999999999999999999999999987776654322   34799999999999999999999998876 4


Q ss_pred             EEEEEE
Q psy11701        117 SIDLSV  122 (745)
Q Consensus       117 ~~~l~V  122 (745)
                      .+.|.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            455543

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.53  E-value=1.1e-13  Score=104.90  Aligned_cols=76  Identities=36%  Similarity=0.757  Sum_probs=66.8

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      |+++.|.|.+.|.|.|+++|+|+|..+.......+.....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   76 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV   76 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence            7899999999999999999999999887554444555667899999999999999999999999999988888773

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.53  E-value=7.1e-14  Score=105.31  Aligned_cols=74  Identities=30%  Similarity=0.528  Sum_probs=63.2

Q ss_pred             cCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         47 RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        47 ~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      ||+++.|.|.+.|.|.|.+.|+|++..+....+.... .+++|.|.+++.+|.|.|+|.|.|..|... ..+.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL-SSGTLRISRVALHDQGQYECQAVNIVGSQR-TVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc-cCCeEEEeeCCHHhCEEEEEEEEeCCCcee-EEEEEeC
Confidence            6999999999999999999999999998866555443 345899999999999999999999998877 5566654

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.52  E-value=1.6e-13  Score=109.62  Aligned_cols=84  Identities=33%  Similarity=0.541  Sum_probs=72.0

Q ss_pred             ccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEE
Q psy11701         40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI  118 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~  118 (745)
                      +.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+... .++.....++.|.|.+++.+|.|.|+|.|.|..|... ..+
T Consensus        10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~   88 (95)
T cd05730          10 EVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQE-AEI   88 (95)
T ss_pred             ccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEE-EEE
Confidence            34567899999999999999999999999999999765 4566556667899999999999999999999999866 667


Q ss_pred             EEEEEe
Q psy11701        119 DLSVLA  124 (745)
Q Consensus       119 ~l~V~~  124 (745)
                      .|.|..
T Consensus        89 ~L~V~~   94 (95)
T cd05730          89 HLKVFA   94 (95)
T ss_pred             EEEEEe
Confidence            777753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.52  E-value=9.1e-14  Score=107.85  Aligned_cols=84  Identities=27%  Similarity=0.415  Sum_probs=72.1

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS  115 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~  115 (745)
                      |+..|.+..+.+|+++.|.|.+.|.|.|.+.|+|++.++....++..  .++.|.|.+++.+|+|.|+|.|.|..|... 
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~-   78 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EAGDLRITKLSLSDSGMYQCVAENKHGTIY-   78 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eCCEEEEeeCCHHHCEEEEEEEECCCCeEE-
Confidence            35678889999999999999999999999999999999987666654  345899999999999999999999998866 


Q ss_pred             EEEEEEE
Q psy11701        116 YSIDLSV  122 (745)
Q Consensus       116 ~~~~l~V  122 (745)
                      .++.|.|
T Consensus        79 ~~~~l~V   85 (85)
T cd05728          79 ASAELAV   85 (85)
T ss_pred             EEEEEEC
Confidence            5566553

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.52  E-value=8.9e-14  Score=103.47  Aligned_cols=73  Identities=34%  Similarity=0.422  Sum_probs=63.5

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      |+++.|.|.+.|.|.|+|.|+|++..+..+.++.+.. +++|.|.+++.+|.|.|+|.|.|..|... .++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD-DGSLEILNITKLDEGSYTCFAENNRGKAN-STGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC-CCEEEECcCChhHCEEEEEEEECCCCcee-EEEEEEC
Confidence            7899999999999999999999999888777877644 34799999999999999999999998887 4566553

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.52  E-value=1.4e-13  Score=108.36  Aligned_cols=87  Identities=21%  Similarity=0.387  Sum_probs=69.6

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC-CeeEEEE-CCEecCC-CCCeEecc---CCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL-PQTIWSK-DGVPINP-SDRISQGN---YGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~-~~v~W~~-~~~~i~~-~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      +.+.|++..+.+|++++|.|.+.|.|. |++.|++ +++.+.. ..++....   ..++|.|.+++.+|+|.|+|.|.|.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   82 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE   82 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence            346778888999999999999999995 6999998 8877765 34544322   2368999999999999999999999


Q ss_pred             CeeeEEEEEEEEE
Q psy11701        110 VGEAKSYSIDLSV  122 (745)
Q Consensus       110 ~g~~~~~~~~l~V  122 (745)
                      .|...+.++.|.|
T Consensus        83 ~~g~~~~s~~l~v   95 (96)
T cd05865          83 DEGESEATVNVKI   95 (96)
T ss_pred             CCCcEEEEEEEEE
Confidence            7555547777776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.51  E-value=1.2e-13  Score=103.07  Aligned_cols=71  Identities=34%  Similarity=0.528  Sum_probs=58.8

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCC-CCCeEeccC--C-cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINP-SDRISQGNY--G-KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~-~~~~~~~~~--~-~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      |.|.|.+.|.|.|.|.|+|++.+|.. ..++.+...  + .+|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~-~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVAT-CHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEE-EEEEEeC
Confidence            57999999999999999999999974 356665322  2 2799999999999999999999999887 4566654

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.51  E-value=1.9e-13  Score=107.93  Aligned_cols=86  Identities=26%  Similarity=0.396  Sum_probs=67.6

Q ss_pred             eeEeeccceeEe---cCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCC-CCCCEEEEEEEEeCC
Q psy11701         35 QQYVTRKKEVAL---RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVE-FSDQGSYTCEVSNGV  110 (745)
Q Consensus        35 ~~~~~~~~~~v~---~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~  110 (745)
                      .|+..|.++.+.   +|++++|.|.+.|.|.|+|+|+|||.+|...........++.|.|.++. .+|.|.|+|.|.|..
T Consensus         3 ~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~   82 (94)
T cd05848           3 VFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSI   82 (94)
T ss_pred             eeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCC
Confidence            345667776654   4789999999999999999999999999754333322334579999885 699999999999999


Q ss_pred             eeeEEEEEEE
Q psy11701        111 GEAKSYSIDL  120 (745)
Q Consensus       111 g~~~~~~~~l  120 (745)
                      |...++.+.|
T Consensus        83 G~~~S~~~~l   92 (94)
T cd05848          83 GSILSREALL   92 (94)
T ss_pred             CeEEeccEEE
Confidence            9988766654

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>KOG4258|consensus

Probab=99.51  E-value=7.5e-13  Score=135.70  Aligned_cols=279  Identities=21%  Similarity=0.265  Sum_probs=180.4

Q ss_pred             ecCceeEEEEEeCCCCCcceeeeeEEEEEEeccC------------CCCceeEEEEcc-------CceeEEEecccccCc
Q psy11701        414 IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKD------------GEGSIRELIVNK-------GESTTTEVDKFVPAS  474 (745)
Q Consensus       414 ~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~------------~~~~~~~~~~~~-------~~~~~~~i~~L~~~~  474 (745)
                      .+..++.++|..-.+.+ --..++|.++|+....            +..+|....+..       ....-+.+.+|+|+|
T Consensus       499 ~~~dsi~lrW~~~~~~d-~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~T  577 (1025)
T KOG4258|consen  499 TSADSILLRWERYQPPD-MRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPWT  577 (1025)
T ss_pred             eecceeEEEecccCCcc-hhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCccc
Confidence            67889999998754332 2246789988866432            122333333311       122357889999999


Q ss_pred             ceeEEEEEecC--CCCC--CCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCc---
Q psy11701        475 KNFARVLAFNG--AYNG--PPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT---  547 (745)
Q Consensus       475 ~Y~~~V~a~n~--~G~g--~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~---  547 (745)
                      .|.+-|++...  .+..  ..|...-++|..+.|++|..+-..+.+++.|.|.|.||..++|.|+.|.|.|+....+   
T Consensus       578 qYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer~~~~~yl  657 (1025)
T KOG4258|consen  578 QYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWERQAEDGYL  657 (1025)
T ss_pred             eeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEeccCCchH
Confidence            99999998832  2222  3456677899999999999988888888899999999999999999999999764221   


Q ss_pred             ---------------------ccCCcc-----------------c-----------------------------------
Q psy11701        548 ---------------------KVGPLL-----------------E-----------------------------------  554 (745)
Q Consensus       548 ---------------------~~~~~~-----------------~-----------------------------------  554 (745)
                                           .+.+..                 +                                   
T Consensus       658 ~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i~vpr~~~~kr  737 (1025)
T KOG4258|consen  658 EQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAIFVPRRPDRKR  737 (1025)
T ss_pred             HHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccceeeecccCcccc
Confidence                                 000000                 0                                   


Q ss_pred             ----------------------------------ccccccCCCcceeeecCCCCCccEEEEEEEEecCCC----CCCcce
Q psy11701        555 ----------------------------------RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGD----GAESKY  596 (745)
Q Consensus       555 ----------------------------------~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~----g~~S~~  596 (745)
                                                        ......+.+..++.|.+|+.++.|.+.+.|.|.++.    |..+-.
T Consensus       738 k~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~v  817 (1025)
T KOG4258|consen  738 KSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHATPKCGCSHAAFV  817 (1025)
T ss_pred             cccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhcccccccccchhhhh
Confidence                                              000000122346778899999999999999999876    332111


Q ss_pred             eeecccC--CCCCCCC-----CCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCC
Q psy11701        597 LFYVPFK--NPDNVEG-----RGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQP  669 (745)
Q Consensus       597 ~~~~~~~--~~~~~~~-----~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  669 (745)
                       +..+..  ...+++.     .....+.+.++|.+|  .+.||.|..|.|+|+...+...  ...+.             
T Consensus       818 -~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP--~~pNGli~~Y~Vk~r~~~~et~--v~cvs-------------  879 (1025)
T KOG4258|consen  818 -FARTMPTMGADDIPGPVTWECHIEMNSVILRWLEP--KEPNGLILNYEVKYRRNGDETH--VECVS-------------  879 (1025)
T ss_pred             -hhccccccccccCCCceeEecccCcceEEEecCCC--CCCCccEEEEEEEEeeccCcch--hhhhh-------------
Confidence             111110  0111111     112558889999654  4689999999999986533211  11010             


Q ss_pred             CcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEe
Q psy11701        670 TFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFV  737 (745)
Q Consensus       670 ~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~  737 (745)
                        .+|                       -.......+.+|.|| .|.++|+|..-+|+|+|.+++-|-
T Consensus       880 --R~~-----------------------~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~  921 (1025)
T KOG4258|consen  880 --RMD-----------------------YAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFY  921 (1025)
T ss_pred             --hhh-----------------------hhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceE
Confidence              000                       012334567789888 799999999999999999887654

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.50  E-value=3.1e-13  Score=104.61  Aligned_cols=81  Identities=28%  Similarity=0.432  Sum_probs=67.7

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEecc--CCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEE
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYS  117 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~  117 (745)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|+|++.+|... .++.+..  ..+.|.|.+++.+|+|.|+|.|.|..|+.. ..
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~-~~   81 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDH-AS   81 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEE-EE
Confidence            3567899999999999999999999999999999753 4555433  346899999999999999999999999866 55


Q ss_pred             EEEEE
Q psy11701        118 IDLSV  122 (745)
Q Consensus       118 ~~l~V  122 (745)
                      +.|.|
T Consensus        82 ~~l~V   86 (86)
T cd05894          82 LFVKV   86 (86)
T ss_pred             EEEEC
Confidence            66554

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.50  E-value=2.5e-13  Score=106.90  Aligned_cols=86  Identities=21%  Similarity=0.326  Sum_probs=70.1

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe--ccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ--GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      ++..|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+........  ......|.|.+++.+|.|.|+|.|.|..|..
T Consensus         3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~   82 (90)
T cd04972           3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA   82 (90)
T ss_pred             cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence            34566777899999999999999999999999999998875544322  2334589999999999999999999999986


Q ss_pred             EEEEEEEEE
Q psy11701        114 KSYSIDLSV  122 (745)
Q Consensus       114 ~~~~~~l~V  122 (745)
                      . ..+.|.|
T Consensus        83 ~-~~~~L~v   90 (90)
T cd04972          83 N-VSVQVTV   90 (90)
T ss_pred             e-EEEEEeC
Confidence            6 5566543

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.50  E-value=3.8e-13  Score=106.39  Aligned_cols=85  Identities=24%  Similarity=0.317  Sum_probs=68.6

Q ss_pred             eeEeeccceeEecC---CcEEEEEEEeecCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCC-CCCCEEEEEEEEe
Q psy11701         35 QQYVTRKKEVALRN---KKVELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVE-FSDQGSYTCEVSN  108 (745)
Q Consensus        35 ~~~~~~~~~~v~~G---~~~~l~C~~~g~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~  108 (745)
                      .|...|+++.+.+|   ++++|.|.+.|.|.|+++|++||.+|...  .++.+  .++.|.|.++. .+|.|.|+|.|.|
T Consensus         3 ~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~--~~g~L~I~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05850           3 VFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL--VAGNLVINNPQKARDAGSYQCLAIN   80 (94)
T ss_pred             eeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE--ECCeEEEccCCccCcCEEEEEEEEc
Confidence            45567888877776   57999999999999999999999998643  33443  34579998865 6999999999999


Q ss_pred             CCeeeEEEEEEEE
Q psy11701        109 GVGEAKSYSIDLS  121 (745)
Q Consensus       109 ~~g~~~~~~~~l~  121 (745)
                      ..|...+..+.|.
T Consensus        81 ~~G~~~s~~a~l~   93 (94)
T cd05850          81 RCGTVVSREANLR   93 (94)
T ss_pred             CcCcEEEEEEEEe
Confidence            9999887776664

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.50  E-value=2.6e-13  Score=102.43  Aligned_cols=76  Identities=41%  Similarity=0.817  Sum_probs=64.8

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      |+++.|.|.+.|.|.|+|+|+|+|+.+.............+.|.|.+++..|+|.|+|.|.|..|....++.|.|+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            7889999999999999999999999986433222334455689999999999999999999999999999988873

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.50  E-value=2.1e-13  Score=103.27  Aligned_cols=78  Identities=21%  Similarity=0.387  Sum_probs=65.1

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS  115 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~  115 (745)
                      ...|+++.+.+|+++.|.|.+.|.|.| +|+|+|||.+|...    ....++.|.|..+  .|.|.|.|.|.|..|...+
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            457888999999999999999999999 79999999998641    1233468999887  4789999999999998887


Q ss_pred             EEEEE
Q psy11701        116 YSIDL  120 (745)
Q Consensus       116 ~~~~l  120 (745)
                      ..+.|
T Consensus        76 ~~a~~   80 (81)
T cd05749          76 RTGTV   80 (81)
T ss_pred             eeEEe
Confidence            66655

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.49  E-value=5.4e-13  Score=104.66  Aligned_cols=87  Identities=26%  Similarity=0.409  Sum_probs=73.9

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      |+.+...|....+.+|+.+.|.|.+.|.|.+.++|+|++..+...   .......+.|.|.+++.+|+|.|+|.+.|..|
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS---AEISMSGAVLKIPNIQFEDEGTYECEAENIKG   77 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc---cEEEEeCCEEEECCCCcccCEEEEEEEEECCC
Confidence            455677788888999999999999999999999999988765432   22335678999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy11701        205 YVYKDVYVNV  214 (745)
Q Consensus       205 ~~~~~~~l~v  214 (745)
                      .....+.|.|
T Consensus        78 ~~~~~~~l~V   87 (88)
T cd04968          78 KDTHQGRIYV   87 (88)
T ss_pred             cEEEEEEEEE
Confidence            9888888876

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.49  E-value=2.9e-13  Score=105.00  Aligned_cols=84  Identities=32%  Similarity=0.582  Sum_probs=73.0

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      |...|.+..+.+|+++.|.|.+.|.|.+.+.|+|+|..+..   ..+....++.|.|.++..+|+|.|+|.|.|..|...
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~---~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS---ENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIY   78 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC---CCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence            44567888999999999999999999999999999998863   234555678999999999999999999999999988


Q ss_pred             EEEEEEE
Q psy11701        208 KDVYVNV  214 (745)
Q Consensus       208 ~~~~l~v  214 (745)
                      .++.|.|
T Consensus        79 ~~~~l~V   85 (85)
T cd05728          79 ASAELAV   85 (85)
T ss_pred             EEEEEEC
Confidence            8887764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.48  E-value=4.6e-13  Score=106.37  Aligned_cols=83  Identities=17%  Similarity=0.224  Sum_probs=68.0

Q ss_pred             ceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceee------cCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        133 EFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKV------GPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      ....+.+|+++.|.|.+.| .|+|.+.|+|||.++...........      ..+.|.|..+..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4667899999999999999 89999999999999974322111111      1368999999999999999999999999


Q ss_pred             EEEEEEEEEe
Q psy11701        206 VYKDVYVNVL  215 (745)
Q Consensus       206 ~~~~~~l~v~  215 (745)
                      ....+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            8888888774

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.48  E-value=6e-13  Score=105.53  Aligned_cols=87  Identities=36%  Similarity=0.536  Sum_probs=74.9

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      .|...+.+..+.+|++++|.|.+.|.|.+++.|++++..|....++.+.  ....+|.|.+++.+|+|.|+|.|.+..|.
T Consensus         2 ~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~   81 (90)
T PF07679_consen    2 VFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGE   81 (90)
T ss_dssp             EEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEE
T ss_pred             EEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCE
Confidence            3567779999999999999999999999999999999999987776554  34568999999999999999999999887


Q ss_pred             eEEEEEEEEE
Q psy11701        113 AKSYSIDLSV  122 (745)
Q Consensus       113 ~~~~~~~l~V  122 (745)
                      .. ..+.|.|
T Consensus        82 ~~-~~~~l~V   90 (90)
T PF07679_consen   82 AT-ASVNLTV   90 (90)
T ss_dssp             EE-EEEEEEE
T ss_pred             EE-EEEEEEC
Confidence            77 5576665

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.47  E-value=4e-13  Score=105.34  Aligned_cols=83  Identities=33%  Similarity=0.523  Sum_probs=70.3

Q ss_pred             eccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCC-CCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701         39 TRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINP-SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY  116 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~  116 (745)
                      .|.+..+.+|+++.|.|.+ .|.|.|.+.|+|++..+.. ..++.... +++|.|.+++.+|+|.|+|.+.|..|...+.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   80 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD-DGNLLIAEARKSDEGTYKCVATNMVGERESA   80 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc-CCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence            5678889999999999998 7899999999999999876 34454433 5689999999999999999999999988777


Q ss_pred             EEEEEE
Q psy11701        117 SIDLSV  122 (745)
Q Consensus       117 ~~~l~V  122 (745)
                      .+.|.|
T Consensus        81 ~~~l~V   86 (86)
T cd05724          81 AARLSV   86 (86)
T ss_pred             eEEEEC
Confidence            776654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.47  E-value=5e-13  Score=101.27  Aligned_cols=72  Identities=32%  Similarity=0.551  Sum_probs=60.7

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCEecCCCC---CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      |++++|.|.+.|.|.|+++|+|+|.++....   ++.  ...++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH--VSSGALILTDVQPSDTAVYQCEARNRHGNLL-ANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE--eeCCEEEECCCChhhCEEEEEEEECCCCeEE-EEEEEEE
Confidence            7899999999999999999999999987532   333  2346899999999999999999999999876 5566665

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.47  E-value=3.5e-13  Score=100.77  Aligned_cols=71  Identities=31%  Similarity=0.513  Sum_probs=59.0

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCC-CCCeEeccCC---cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINP-SDRISQGNYG---KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~-~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      |+|.|.+.|.|.|++.|+|++.+|.. ..++.+...+   .+|.|.+++.+|+|.|+|.|.|..|... .++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVS-CTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE-EEEEEeC
Confidence            57999999999999999999999875 3566664432   2699999999999999999999999887 5566654

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.46  E-value=4.5e-13  Score=96.76  Aligned_cols=65  Identities=31%  Similarity=0.390  Sum_probs=54.5

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      +.|.|.+.|.|.|.++|+|||++|...      ..++.|.|.++..+|+|.|+|.|.|..|... +++.+.|
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLE-KRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccEE-EEEEEEE
Confidence            479999999999999999999999632      2356899999999999999999999988655 4455544

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.46  E-value=6.8e-13  Score=104.22  Aligned_cols=86  Identities=29%  Similarity=0.465  Sum_probs=68.4

Q ss_pred             CeeEeeccceeEecCC---cEEEEEEEeecCCCeeEEEECCEecCC-CCCeEeccCCcEEEEccCC-CCCCEEEEEEEEe
Q psy11701         34 KQQYVTRKKEVALRNK---KVELFCIFGGTPLPQTIWSKDGVPINP-SDRISQGNYGKSLIIKHVE-FSDQGSYTCEVSN  108 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~---~~~l~C~~~g~p~~~v~W~~~~~~i~~-~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~  108 (745)
                      +.|..+|.+..+.++.   .+.|.|.+.|.|.|+++|+|++.++.. ..++.+  .++.|.|.++. .+|+|.|+|.|.|
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~--~~g~L~I~~~~~~~D~G~Y~C~A~N   79 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM--VGGNLVINNPDKYKDAGRYVCIVSN   79 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE--ECCEEEECcCCcCCCCEEEEEEEEe
Confidence            3455667777666544   899999999999999999999998864 345543  34689999985 6999999999999


Q ss_pred             CCeeeEEEEEEEE
Q psy11701        109 GVGEAKSYSIDLS  121 (745)
Q Consensus       109 ~~g~~~~~~~~l~  121 (745)
                      ..|...+..+.|.
T Consensus        80 ~~G~~~s~~a~l~   92 (93)
T cd05849          80 IYGKVRSREATLS   92 (93)
T ss_pred             CcceEEEccEEEe
Confidence            9999887776663

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.46  E-value=5e-13  Score=99.43  Aligned_cols=72  Identities=26%  Similarity=0.494  Sum_probs=62.4

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      |+++.|.|.+.|.|.+.++|+|++..+...   .++.. .++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~---~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN---SRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccC---CCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            789999999999999999999999877532   34433 5689999999999999999999999999998888764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.46  E-value=4.4e-13  Score=100.95  Aligned_cols=74  Identities=30%  Similarity=0.557  Sum_probs=63.3

Q ss_pred             CCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       139 ~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      +|+++.|.|.+.|.|.|.++|+|+|..+....  ......++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDR--RHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCC--CeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            69999999999999999999999999886421  122335679999999999999999999999999888887764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.46  E-value=7.2e-13  Score=105.82  Aligned_cols=91  Identities=27%  Similarity=0.496  Sum_probs=72.0

Q ss_pred             CeEEec--CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        126 PYFTVE--PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       126 p~~~~~--~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      |.+...  +....+..|+++.|.|.+.|.|.+.+.|+++|..+.............+.|.|.+++.+|+|.|+|.|.|..
T Consensus         2 p~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   81 (95)
T cd05730           2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKA   81 (95)
T ss_pred             CccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCC
Confidence            444443  344578899999999999999999999999999887542111122234579999999999999999999999


Q ss_pred             ceEEEEEEEEEee
Q psy11701        204 GYVYKDVYVNVLA  216 (745)
Q Consensus       204 g~~~~~~~l~v~~  216 (745)
                      |.....+.|.|..
T Consensus        82 G~~~~~~~L~V~~   94 (95)
T cd05730          82 GEQEAEIHLKVFA   94 (95)
T ss_pred             CeEEEEEEEEEEe
Confidence            9999888888863

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.46  E-value=6.2e-13  Score=102.64  Aligned_cols=77  Identities=27%  Similarity=0.419  Sum_probs=62.8

Q ss_pred             CcEEEEEEEeecCCC--eeEEEECCEecCCC---CCeE---eccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         49 KKVELFCIFGGTPLP--QTIWSKDGVPINPS---DRIS---QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        49 ~~~~l~C~~~g~p~~--~v~W~~~~~~i~~~---~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      +.++|.|.+.|.|.|  ++.|+|||.+|...   .++.   .....++|.|.+++.+|+|.|+|.|.|..|... .++.|
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~-~~~~L   79 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS-ASATL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE-EEEEE
Confidence            478999999999987  68999999998642   2332   222346899999999999999999999998777 77899


Q ss_pred             EEEecC
Q psy11701        121 SVLAAP  126 (745)
Q Consensus       121 ~V~~~p  126 (745)
                      .|..+|
T Consensus        80 ~V~~~P   85 (85)
T cd05854          80 VVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            998766

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.46  E-value=6.8e-13  Score=104.93  Aligned_cols=88  Identities=23%  Similarity=0.427  Sum_probs=73.3

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee--cCceEEEccCCCCCCEEEEEEEEe
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV--GPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      .+|.|...|.+..+.+|+++.|.|.+.|.|.+.+.|+|+|..+...... ....  ..+.|.|.++..+|+|.|+|.|.|
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   80 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRH-QITSTEYKSTFEISKVQMSDEGNYTVVVEN   80 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcE-EEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence            3688888899999999999999999999999999999999987643211 1111  246899999999999999999999


Q ss_pred             CCceEEEEEEE
Q psy11701        202 SLGYVYKDVYV  212 (745)
Q Consensus       202 ~~g~~~~~~~l  212 (745)
                      ..|.....+.|
T Consensus        81 ~~G~~~~~~~l   91 (92)
T cd05747          81 SEGKQEAQFTL   91 (92)
T ss_pred             CCCCEeEEEEe
Confidence            99988777655

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.46  E-value=9.1e-13  Score=104.96  Aligned_cols=81  Identities=22%  Similarity=0.240  Sum_probs=67.4

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--------cCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--------NYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      ...+..|+.+.|.|.+.|.|.|.+.|+|||.+|..+.+....        ...++|.|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            567889999999999999999999999999999865543221        124689999999999999999999998886


Q ss_pred             EEEEEEEEEE
Q psy11701        114 KSYSIDLSVL  123 (745)
Q Consensus       114 ~~~~~~l~V~  123 (745)
                      . .++.|.|.
T Consensus        92 ~-~t~~l~V~  100 (101)
T cd05859          92 S-YTFALQIQ  100 (101)
T ss_pred             E-EEEEEEEE
Confidence            6 66777664

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.45  E-value=9.3e-13  Score=103.66  Aligned_cols=82  Identities=29%  Similarity=0.405  Sum_probs=67.5

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cC-CcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NY-GKSLIIKHVEFSDQGSYTCEVSNGVGEAKS  115 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~-~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~  115 (745)
                      .|..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+....++...  .. ..+|.|.+++.+|+|.|+|.|.|..|... 
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-   85 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET-   85 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee-
Confidence            456778999999999999999999999999999998776665432  21 23799999999999999999999998877 


Q ss_pred             EEEEEE
Q psy11701        116 YSIDLS  121 (745)
Q Consensus       116 ~~~~l~  121 (745)
                      ..+.|.
T Consensus        86 ~~~~v~   91 (92)
T cd05891          86 VDVTVS   91 (92)
T ss_pred             eEEEEE
Confidence            445544

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.45  E-value=8.4e-13  Score=99.66  Aligned_cols=74  Identities=27%  Similarity=0.457  Sum_probs=60.9

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCEecCCCCC-eEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDR-ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      |++++|.|.+.|.|.|+|+|+|+|++|..... ......++.|.|.+++.+|.|.|+|.|.|..|... .++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLL-ANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEE-EEEEEEe
Confidence            78999999999999999999999999864321 11123455899999999999999999999999888 5567665

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.45  E-value=1.3e-12  Score=101.06  Aligned_cols=81  Identities=22%  Similarity=0.402  Sum_probs=66.6

Q ss_pred             eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee--cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV--GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      ...+.+|+++.|.|.+.|.|.|.+.|+|+++.+...........  ..+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            45678999999999999999999999999999875422111221  2468999999999999999999999999888877


Q ss_pred             EEE
Q psy11701        212 VNV  214 (745)
Q Consensus       212 l~v  214 (745)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            754

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.44  E-value=1e-12  Score=100.12  Aligned_cols=76  Identities=41%  Similarity=0.878  Sum_probs=65.7

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      |+++.|.|.+.|.|.|.+.|+++|..+.............+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|+
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   76 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV   76 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence            7899999999999999999999999887544332344566899999999999999999999999999988888773

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.44  E-value=1.2e-12  Score=102.00  Aligned_cols=79  Identities=28%  Similarity=0.372  Sum_probs=66.3

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEecc---C---CcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGN---Y---GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~---~---~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      |+.++|.|.+.|.|.+.+.|+|++..|... .++.+..   .   .+.|.|.++..+|+|.|+|.|.|..|... ..+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR-GIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce-EEEEE
Confidence            789999999999999999999999988653 3554321   1   25799999999999999999999999877 77899


Q ss_pred             EEEecCe
Q psy11701        121 SVLAAPY  127 (745)
Q Consensus       121 ~V~~~p~  127 (745)
                      .|..+|.
T Consensus        80 ~V~~~P~   86 (88)
T cd05735          80 TVQEPPD   86 (88)
T ss_pred             EEeCCCC
Confidence            9987763

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.44  E-value=1.2e-12  Score=103.50  Aligned_cols=83  Identities=29%  Similarity=0.530  Sum_probs=68.1

Q ss_pred             cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec---CceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG---PNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      .|....+.+|+++.|.|.+.|.|.|.+.|+|+|..+...... .....   ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHY-NVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET   85 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCE-EEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence            466778999999999999999999999999999988643321 12211   24799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy11701        208 KDVYVNV  214 (745)
Q Consensus       208 ~~~~l~v  214 (745)
                      ..+.|.|
T Consensus        86 ~~~~v~v   92 (92)
T cd05737          86 VDVTVSV   92 (92)
T ss_pred             EEEEEeC
Confidence            8777654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.44  E-value=1.1e-12  Score=106.75  Aligned_cols=90  Identities=27%  Similarity=0.414  Sum_probs=68.7

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-----CCeEeccCCc--EEEE--ccCCCCCCEEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-----DRISQGNYGK--SLII--KHVEFSDQGSYT  103 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-----~~~~~~~~~~--~L~i--~~~~~~d~G~Y~  103 (745)
                      |+.+...|.+..+.+|++++|.|.+.|.|.|.+.|+|+|..+...     .+......+.  .+.+  ..++.+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            345567788999999999999999999999999999999998751     1222222222  2222  234789999999


Q ss_pred             EEEEeCCeeeEEEEEEEEE
Q psy11701        104 CEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus       104 C~~~~~~g~~~~~~~~l~V  122 (745)
                      |.|.|..|...+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            9999999997777787776

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.44  E-value=1.4e-12  Score=97.15  Aligned_cols=71  Identities=31%  Similarity=0.486  Sum_probs=59.8

Q ss_pred             cEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        50 ~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      +++|.|.+.|.|.|.++|+|+|..+....++..... ..|.|.+++.+|+|.|+|.|.|..|... .++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~-~~l~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKE-HNLQVLGLVKSDEGFYQCIAENDVGNVQ-ASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEec-CCEEEEcCCcccCEEEEEEEEcCCCEEE-EEEEEEC
Confidence            589999999999999999999999887666665443 4588999999999999999999999877 5566653

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.44  E-value=8.1e-13  Score=100.73  Aligned_cols=78  Identities=23%  Similarity=0.393  Sum_probs=64.5

Q ss_pred             ccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701         40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID  119 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~  119 (745)
                      |....+.+|+.++|.|.+.+. .+.+.|+|||.+|....++.+.  +..|.|.+++.+|+|.|+|.+.|..|... ..+.
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~-~~~~   76 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GEEVQIKDAVPRDSGLYACVTSSPSGSDT-TYFS   76 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CCEEEECCCChhhCEEEEEEEeCCCCccc-EEEE
Confidence            466789999999999999886 5689999999999877776653  45899999999999999999999877755 3344


Q ss_pred             EE
Q psy11701        120 LS  121 (745)
Q Consensus       120 l~  121 (745)
                      |.
T Consensus        77 v~   78 (79)
T cd04973          77 VN   78 (79)
T ss_pred             Ee
Confidence            44

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.44  E-value=8.5e-13  Score=98.45  Aligned_cols=70  Identities=29%  Similarity=0.525  Sum_probs=58.0

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee---cC--ceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV---GP--NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~---~~--~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      +.|.|.+.|.|.|.+.|+|+|..+....  .++..   ..  .+|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~--~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNT--DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCC--CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            4799999999999999999999887422  23222   22  27999999999999999999999999998888764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.43  E-value=1.4e-12  Score=102.71  Aligned_cols=86  Identities=17%  Similarity=0.338  Sum_probs=68.2

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE-CCEecCCCCCeEeccC---CcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNY---GKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~-~~~~i~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      +.+.|.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+....++.....   .++|+|.+++.+|+|.|+|.|.|..|
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            346778889999999999999999975 999998 6777765455443222   25899999999999999999999877


Q ss_pred             eeEEEEEEEEE
Q psy11701        112 EAKSYSIDLSV  122 (745)
Q Consensus       112 ~~~~~~~~l~V  122 (745)
                      .....++.|.|
T Consensus        82 ~~~~~sv~l~~   92 (92)
T cd04977          82 TESEATVNLKI   92 (92)
T ss_pred             CcceeEEEEEC
Confidence            66667777654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.43  E-value=1.5e-12  Score=103.30  Aligned_cols=89  Identities=36%  Similarity=0.686  Sum_probs=75.7

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-ecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      |.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+++|..+.......... .....|.|.++..+|+|.|+|.+.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            678888999999999999999999999999999999999998633222111 2456899999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy11701        205 YVYKDVYVNV  214 (745)
Q Consensus       205 ~~~~~~~l~v  214 (745)
                      .....+.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9988888765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.43  E-value=9.5e-13  Score=95.06  Aligned_cols=66  Identities=24%  Similarity=0.457  Sum_probs=56.7

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      +.|.|.+.|.|.|.++|+|||+.+...       ...+.|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc-------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            479999999999999999999998621       235699999999999999999999999987777666653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.43  E-value=1.4e-12  Score=101.81  Aligned_cols=79  Identities=33%  Similarity=0.511  Sum_probs=65.8

Q ss_pred             eeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCe---EeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701         43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID  119 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~  119 (745)
                      ..+.+|+++.|.|.+.|.|.|.+.|+|+|..+....+.   .......+|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~-~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN-HTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEE-EEEE
Confidence            35788999999999999999999999999999765442   3334456899999999999999999999999866 5666


Q ss_pred             EEE
Q psy11701        120 LSV  122 (745)
Q Consensus       120 l~V  122 (745)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05857          83 LDV   85 (85)
T ss_pred             EEC
Confidence            654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.43  E-value=2.4e-12  Score=102.89  Aligned_cols=88  Identities=26%  Similarity=0.495  Sum_probs=67.7

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-----CCeEeccC--CcEEEEccCCCCCCEEEEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-----DRISQGNY--GKSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-----~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~  105 (745)
                      |.+. ..+....+..|++++|.|.+.|.|.|.++|++++..+...     .++.....  .+.|.|.+++.+|+|.|+|.
T Consensus         3 p~i~-~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           3 PKIT-YVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             ceEE-EccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            4544 3455666667899999999999999999999998877532     23333222  25899999999999999999


Q ss_pred             EEeCCeeeEEEEEEEEE
Q psy11701        106 VSNGVGEAKSYSIDLSV  122 (745)
Q Consensus       106 ~~~~~g~~~~~~~~l~V  122 (745)
                      |.|..|... .++.|.|
T Consensus        82 A~N~~G~~~-~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDS-QSMYLEV   97 (97)
T ss_pred             EecCCCCee-EEEEEEC
Confidence            999999876 5566654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.43  E-value=1.3e-12  Score=98.24  Aligned_cols=73  Identities=36%  Similarity=0.404  Sum_probs=63.0

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      |+++.|.|.+.|.|.|+++|+|++..+....++..... .+|.|.+++.+|+|.|+|.|.|..|... .++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD-GSLEILNVTKSDEGKYTCFAENFFGKAN-STGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC-CeEEEccCChhHCEEEEEEEECCCCceE-EEEEEEC
Confidence            78999999999999999999999999987777776443 4799999999999999999999998877 5566554

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.42  E-value=1.5e-12  Score=103.83  Aligned_cols=86  Identities=34%  Similarity=0.469  Sum_probs=70.7

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC--eEeccCCcEEEEccC-----CCCCCEEEEEEEEe
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHV-----EFSDQGSYTCEVSN  108 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~--~~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~  108 (745)
                      |...|.+..+.+|++++|.|.+.|.|.|.++|+|||..|.....  ..... +++|.|.++     +.+|.|.|+|.|.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~~~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP-NGSLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc-CCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            45678889999999999999999999999999999999975432  33323 345777776     68999999999999


Q ss_pred             C-CeeeEEEEEEEEE
Q psy11701        109 G-VGEAKSYSIDLSV  122 (745)
Q Consensus       109 ~-~g~~~~~~~~l~V  122 (745)
                      . .|...+..+.|.|
T Consensus        81 ~~~G~~~s~~~~l~v   95 (95)
T cd05722          81 DSLGSIVSRTARLTV   95 (95)
T ss_pred             CccCcEEEeeeEEeC
Confidence            9 9998878777765

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.42  E-value=1.7e-12  Score=102.32  Aligned_cols=84  Identities=26%  Similarity=0.423  Sum_probs=66.7

Q ss_pred             EecCceeEeeCCCeEEEEEEEeecCC-CeEEEEe-CCEeccCCCCCCceee-----cCceEEEccCCCCCCEEEEEEEEe
Q psy11701        129 TVEPEFINAAEEETVTFECKASGLPE-PEIHWVH-NGKPISQAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~-~g~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      ...|....+.+|+++.|.|.+.|.|. +.++|++ +|+.+.....  +...     ..++|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~--r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N   81 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQ--RISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN   81 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCC--eEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence            34567778999999999999999985 6999998 7776653211  2221     136899999999999999999999


Q ss_pred             CC-ceEEEEEEEEE
Q psy11701        202 SL-GYVYKDVYVNV  214 (745)
Q Consensus       202 ~~-g~~~~~~~l~v  214 (745)
                      .. |....++.|.|
T Consensus        82 ~~~g~~~~s~~l~v   95 (96)
T cd05865          82 EDEGESEATVNVKI   95 (96)
T ss_pred             CCCCcEEEEEEEEE
Confidence            96 88888888776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.42  E-value=1.3e-12  Score=98.27  Aligned_cols=72  Identities=35%  Similarity=0.584  Sum_probs=61.6

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecC--CCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPIN--PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL  123 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~  123 (745)
                      ++|.|.+.|.|.|.|+|+|++.++.  ...++.... ++.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~   74 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLR-SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR   74 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcC-CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence            4799999999999999999999987  345666543 45799999999999999999999999988788888773

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.42  E-value=1.7e-12  Score=97.66  Aligned_cols=71  Identities=32%  Similarity=0.486  Sum_probs=58.1

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCC-CCCeEeccC--C-cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINP-SDRISQGNY--G-KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~-~~~~~~~~~--~-~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      ++|.|.+.|.|.|.+.|+|++..|.. ..++.+...  + .+|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVS-CNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEE-EEEEEeC
Confidence            57999999999999999999999974 356554322  2 2799999999999999999999999877 4566654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.42  E-value=1.9e-12  Score=98.67  Aligned_cols=74  Identities=28%  Similarity=0.415  Sum_probs=62.2

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCEecCCCCCe-EeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI-SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      |++++|.|.+.|.|.|.+.|+++|..+...... .....+..|.|.+++.+|.|.|+|.|.|..|... ..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLL-ANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEE-EeEEEEE
Confidence            789999999999999999999999998754432 3334457899999999999999999999988876 5577765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.41  E-value=2.2e-12  Score=97.73  Aligned_cols=73  Identities=29%  Similarity=0.556  Sum_probs=60.4

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCCCC-CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE-EEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSVL  123 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~l~V~  123 (745)
                      ++|.|.+.|.|.|.+.|+|+|.+|.... ++.+....+.|.|.+++.+|+|.|+|.|.|..|... +..+.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            5899999999999999999999987543 455555567899999999999999999999999865 345666653

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.41  E-value=2e-12  Score=103.58  Aligned_cols=84  Identities=32%  Similarity=0.593  Sum_probs=66.7

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecCC-----CCCeEecc--CCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPINP-----SDRISQGN--YGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~~-----~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      ..+.+..+.+|++++|.|.+.|.|.|.+.|+|  ++..+..     ..++....  ...+|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   85 (98)
T cd05870           6 IQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAAS   85 (98)
T ss_pred             EeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEec
Confidence            34778999999999999999999999999999  4444432     23555432  235899999999999999999999


Q ss_pred             CCeeeEEEEEEEEE
Q psy11701        109 GVGEAKSYSIDLSV  122 (745)
Q Consensus       109 ~~g~~~~~~~~l~V  122 (745)
                      ..|... .++.|.|
T Consensus        86 ~~G~~~-~~~~l~~   98 (98)
T cd05870          86 RIGGHQ-KSMYLDI   98 (98)
T ss_pred             cCCcce-eEEEEeC
Confidence            999766 5566654

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.41  E-value=2.8e-12  Score=102.19  Aligned_cols=82  Identities=15%  Similarity=0.246  Sum_probs=67.6

Q ss_pred             eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce-------eecCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701        134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-------KVGPNRITIENLRKSDTGNYGCNATNSLGYV  206 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~  206 (745)
                      ...+..|+.+.|.|.+.|.|.|.+.|+|||.++.........       ....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            567789999999999999999999999999998744321111       1123689999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy11701        207 YKDVYVNVL  215 (745)
Q Consensus       207 ~~~~~l~v~  215 (745)
                      ..++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.41  E-value=2.8e-12  Score=104.29  Aligned_cols=96  Identities=30%  Similarity=0.473  Sum_probs=72.0

Q ss_pred             CCCCCeeEeeccceeEe---cCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEec--c----CCcEEEEccCC-CCC
Q psy11701         30 RHAPKQQYVTRKKEVAL---RNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQG--N----YGKSLIIKHVE-FSD   98 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~v~---~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~--~----~~~~L~i~~~~-~~d   98 (745)
                      +++|.+...+....++.   .|.+++|.|.+.|.|.+.+.|+|||..|... .++...  .    .++.|+|.++. .+|
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            34566644433233333   4689999999999999999999999998743 344321  1    13579999997 699


Q ss_pred             CEEEEEEEEeCCeeeEEEEEEEEEEecC
Q psy11701         99 QGSYTCEVSNGVGEAKSYSIDLSVLAAP  126 (745)
Q Consensus        99 ~G~Y~C~~~~~~g~~~~~~~~l~V~~~p  126 (745)
                      .|.|+|.|.|..|... ..+.|.|..+|
T Consensus        82 ~G~Y~C~A~N~~G~~~-~~i~L~~~~~p  108 (109)
T cd05773          82 YALFTCTAHNSLGEDS-LDIQLVSTSRP  108 (109)
T ss_pred             CEEEEEEEEeCCccCc-EEEEEEecCCC
Confidence            9999999999999976 77888888766

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.40  E-value=2.1e-12  Score=95.84  Aligned_cols=69  Identities=29%  Similarity=0.456  Sum_probs=57.1

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      +.|.|.+.|.|.|.+.|+|||.+|....++.  ..+..|.|.+++.+|+|.|+|.|.|..|... ..+.+.|
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK--KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLE-KRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEE--cCCCEEEECcCCHHHCEEEEEEEEcCCccEE-EEEEEEE
Confidence            4799999999999999999999998665444  4456899999999999999999999887755 4444443

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.40  E-value=1.6e-12  Score=97.16  Aligned_cols=70  Identities=29%  Similarity=0.564  Sum_probs=57.9

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee--cC-c--eEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV--GP-N--RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~--~~-~--~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      +.|.|.+.|.|.|.+.|+|++..+....  .++..  .. +  .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNT--DRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCC--CeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            4799999999999999999999886432  23322  21 2  6999999999999999999999999998888764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.40  E-value=4.6e-12  Score=109.09  Aligned_cols=115  Identities=24%  Similarity=0.400  Sum_probs=85.5

Q ss_pred             EEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCEe
Q psy11701         88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PE-PEIHWVHNGKP  165 (745)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~  165 (745)
                      +|+|.+++.+|+|.|.|.+.+..+... ..+.|.|..+|.+...+......+|+.+.|.|.+.|. |. +.|+|+++|..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQ-QIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCccee-eEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            699999999999999999988766644 7789999999999888776666689999999999984 54 48999999864


Q ss_pred             ccC-----CCC--CCceeec------CceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        166 ISQ-----APP--NPRRKVG------PNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       166 ~~~-----~~~--~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ...     ...  .......      .+.|.|..-..++.+.|+|.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            221     000  0011111      2456676666666779999998764

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.40  E-value=1.7e-12  Score=95.19  Aligned_cols=68  Identities=26%  Similarity=0.415  Sum_probs=55.4

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE-EEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLS  121 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~l~  121 (745)
                      +.|.|.+.|.|.|.+.|+|||++|....++.   .+..|.|.++..+|+|.|+|.|.|..|... +..+.|.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEc---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            4789999999999999999999997654332   345899999999999999999999988655 3444443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.40  E-value=2.1e-12  Score=101.66  Aligned_cols=85  Identities=25%  Similarity=0.410  Sum_probs=68.2

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce-eecCceEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy11701        130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-KVGPNRITIENLRKSDTGNYGCNATNSLGYVYK  208 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~  208 (745)
                      ..|....+.+|+.+.|.|.+.|.|.|.+.|+++|..+......... ......|.|.++..+|.|.|+|.|.|..|....
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~   84 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV   84 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence            3456666899999999999999999999999999987633221111 122358999999999999999999999999888


Q ss_pred             EEEEEE
Q psy11701        209 DVYVNV  214 (745)
Q Consensus       209 ~~~l~v  214 (745)
                      .+.|.|
T Consensus        85 ~~~L~v   90 (90)
T cd04972          85 SVQVTV   90 (90)
T ss_pred             EEEEeC
Confidence            877754

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.40  E-value=2e-12  Score=96.32  Aligned_cols=70  Identities=33%  Similarity=0.597  Sum_probs=58.5

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      +.|.|.+.|.|.|.+.|+|++..+... +......+++|.|.+++.+|.|.|+|.|.|..|... ..+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPN-RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSAR-HHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCC-ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEE-EEEEEEE
Confidence            479999999999999999999887643 333334567999999999999999999999999866 6677766

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.39  E-value=3.3e-12  Score=102.10  Aligned_cols=90  Identities=29%  Similarity=0.507  Sum_probs=71.3

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCC--CCceee----cCceEEEccCCCCCCEEEEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP--NPRRKV----GPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~--~~~~~~----~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      .|.|...+....+..|+.+.|.|.+.|.|.|.++|++++..+.....  ..+...    ..+.|.|.++..+|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            46677677776677799999999999999999999999887653221  112221    125899999999999999999


Q ss_pred             EEeCCceEEEEEEEEE
Q psy11701        199 ATNSLGYVYKDVYVNV  214 (745)
Q Consensus       199 ~~~~~g~~~~~~~l~v  214 (745)
                      |.|..|....++.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999988887764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.39  E-value=4e-12  Score=93.45  Aligned_cols=68  Identities=22%  Similarity=0.481  Sum_probs=55.7

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      |++++|.|.+.|.|.|.|.|+|++.++....++..  ....|.|.+++  |+|.|+|.|.|..|... .++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~--~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~-~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV--GRNVLELTNIY--ESANYTCVAISSLGMIE-ATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec--CccEEEEeccc--cCeeEEEEEEeCCCEEE-EEEEE
Confidence            78999999999999999999999999876555442  33479999874  89999999999999866 44443

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.39  E-value=3.6e-12  Score=99.21  Aligned_cols=75  Identities=23%  Similarity=0.356  Sum_probs=63.6

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-----c---CceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-----G---PNRITIENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-----~---~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      |+.+.|.|.+.|.|.+.++|+|++..+....  .++..     +   .+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~--~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~   78 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEM--SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ   78 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCC--CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence            7899999999999999999999999886432  12221     1   257999999999999999999999999999999


Q ss_pred             EEEee
Q psy11701        212 VNVLA  216 (745)
Q Consensus       212 l~v~~  216 (745)
                      |.|..
T Consensus        79 L~V~~   83 (88)
T cd05735          79 LTVQE   83 (88)
T ss_pred             EEEeC
Confidence            99985

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.39  E-value=2.8e-12  Score=97.70  Aligned_cols=67  Identities=34%  Similarity=0.498  Sum_probs=58.4

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccC--CcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY--GKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      |+++.|.|.+.|.|.|.+.|++++..+....++.....  ...|.|.+++.+|.|.|+|.|.|..|...
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   69 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVF   69 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEE
Confidence            78999999999999999999999998877666654332  35899999999999999999999988776

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.39  E-value=6.5e-12  Score=99.22  Aligned_cols=82  Identities=33%  Similarity=0.601  Sum_probs=66.8

Q ss_pred             CeEEecCceeEee---CCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC-CCCCEEEEEEEEe
Q psy11701        126 PYFTVEPEFINAA---EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR-KSDTGNYGCNATN  201 (745)
Q Consensus       126 p~~~~~~~~~~v~---~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~  201 (745)
                      |.|...|.+..+.   +|+++.|.|.+.|.|.|.++|+|+|..+.... ..+....++.|.|.++. .+|+|.|+|.|.|
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~-~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTES-DYRYSLIDGNLIISNPSEVKDSGRYQCLATN   80 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCC-CceEEeeCCeEEEccCCccCcCEEEEEEEEc
Confidence            6677778776654   47899999999999999999999999886432 23445567899999985 6999999999999


Q ss_pred             CCceEEE
Q psy11701        202 SLGYVYK  208 (745)
Q Consensus       202 ~~g~~~~  208 (745)
                      ..|...+
T Consensus        81 ~~G~~~S   87 (94)
T cd05848          81 SIGSILS   87 (94)
T ss_pred             CCCeEEe
Confidence            9998754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.39  E-value=4.2e-12  Score=95.87  Aligned_cols=72  Identities=39%  Similarity=0.612  Sum_probs=60.6

Q ss_pred             cEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        50 ~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      ++.|.|.+.|.|.|.+.|+|+|..+....++.+.  .....|.|.+++.+|+|.|+|.|.|..|... .++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKS-ATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEE-EEEEEEC
Confidence            4789999999999999999999999766666553  3456899999999999999999999998866 5566654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.39  E-value=3.6e-12  Score=102.23  Aligned_cols=83  Identities=29%  Similarity=0.530  Sum_probs=67.0

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-----CCeEecc--CCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-----DRISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-----~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      .+.+..+.+|++++|.|.+.|.|.|.+.|++++..+...     .++....  ..+.|.|.+++.+|.|.|+|.|.|..|
T Consensus         7 ~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   86 (96)
T cd05732           7 YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIG   86 (96)
T ss_pred             ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCC
Confidence            456788999999999999999999999999998776542     2333322  235899999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy11701        112 EAKSYSIDLSV  122 (745)
Q Consensus       112 ~~~~~~~~l~V  122 (745)
                      ... .++.|.|
T Consensus        87 ~~~-~s~~l~v   96 (96)
T cd05732          87 GDQ-QSMYLEV   96 (96)
T ss_pred             CcE-EEEEEeC
Confidence            875 6666654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.39  E-value=6.4e-12  Score=98.70  Aligned_cols=82  Identities=29%  Similarity=0.436  Sum_probs=66.6

Q ss_pred             cCeEEecCceeEeeCC---CeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC-CCCCEEEEEEEE
Q psy11701        125 APYFTVEPEFINAAEE---ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR-KSDTGNYGCNAT  200 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G---~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~  200 (745)
                      .|.|...|.+..+.++   +.+.|.|.+.|.|.|.++|+|++..+...  ..+....++.|.|.++. ..|+|.|+|.|.
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~--~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~   78 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT--NDRYSMVGGNLVINNPDKYKDAGRYVCIVS   78 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC--CCeEEEECCEEEECcCCcCCCCEEEEEEEE
Confidence            3677788887766554   48999999999999999999999987532  23455567899999985 699999999999


Q ss_pred             eCCceEEE
Q psy11701        201 NSLGYVYK  208 (745)
Q Consensus       201 ~~~g~~~~  208 (745)
                      |..|....
T Consensus        79 N~~G~~~s   86 (93)
T cd05849          79 NIYGKVRS   86 (93)
T ss_pred             eCcceEEE
Confidence            99998655

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.38  E-value=9.4e-12  Score=98.40  Aligned_cols=82  Identities=33%  Similarity=0.559  Sum_probs=67.2

Q ss_pred             CeEEecCceeEeeCC---CeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC-CCCCEEEEEEEEe
Q psy11701        126 PYFTVEPEFINAAEE---ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR-KSDTGNYGCNATN  201 (745)
Q Consensus       126 p~~~~~~~~~~v~~G---~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~  201 (745)
                      |.|...|.+..+.+|   +++.|.|.+.|.|.+.++|+++|..+.... ..+....++.|.|.++. ..|+|.|+|.|+|
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAP-ESRYTLVAGNLVINNPQKARDAGSYQCLAIN   80 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCC-CceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence            677788888877665   689999999999999999999999986432 23455567889998865 5999999999999


Q ss_pred             CCceEEE
Q psy11701        202 SLGYVYK  208 (745)
Q Consensus       202 ~~g~~~~  208 (745)
                      ..|...+
T Consensus        81 ~~G~~~s   87 (94)
T cd05850          81 RCGTVVS   87 (94)
T ss_pred             CcCcEEE
Confidence            9998765

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.38  E-value=5.2e-12  Score=102.64  Aligned_cols=90  Identities=30%  Similarity=0.555  Sum_probs=68.9

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCC---CCceeecCceEEEc-----cCCCCCCEEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP---NPRRKVGPNRITIE-----NLRKSDTGNYG  196 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~---~~~~~~~~~~L~i~-----~v~~~d~G~Y~  196 (745)
                      +|.|...|....+.+|+++.|.|.+.|.|.+.+.|+|+|..+.....   .......++.+.+.     .++.+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            57888899999999999999999999999999999999998875221   11222333433222     23789999999


Q ss_pred             EEEEeCCce-EEEEEEEEE
Q psy11701        197 CNATNSLGY-VYKDVYVNV  214 (745)
Q Consensus       197 C~~~~~~g~-~~~~~~l~v  214 (745)
                      |.|.|..|. .+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 555566665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.38  E-value=3.3e-12  Score=99.32  Aligned_cols=77  Identities=27%  Similarity=0.478  Sum_probs=62.2

Q ss_pred             CcEEEEEEEeecCCC--eeEEEECCEecCCCC---Ce---EeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         49 KKVELFCIFGGTPLP--QTIWSKDGVPINPSD---RI---SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        49 ~~~~l~C~~~g~p~~--~v~W~~~~~~i~~~~---~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      ++++|.|.+.|.|.|  ++.|+|||.+|....   ++   ......+.|.|.+++.+|+|.|+|.|.|..|... .++.|
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-~~~~l   79 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS-ASADL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE-EEEEE
Confidence            478999999999987  679999999886332   22   1223456899999999999999999999888765 77899


Q ss_pred             EEEecC
Q psy11701        121 SVLAAP  126 (745)
Q Consensus       121 ~V~~~p  126 (745)
                      .|..+|
T Consensus        80 ~V~~pP   85 (85)
T cd04970          80 IVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            998776

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.37  E-value=3.2e-12  Score=99.31  Aligned_cols=79  Identities=30%  Similarity=0.531  Sum_probs=64.0

Q ss_pred             eeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      +.+..|++++|.|.+.|.|.|.+.|+|++..+.............+|.|.+++.+|+|.|+|.+.|..|... ..+.|.|
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~v~v   82 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN-ATYKVDV   82 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEE-EEEEEeC
Confidence            456789999999999999999999999999886554443334446899999999999999999999988755 5555543

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.37  E-value=4.2e-12  Score=94.25  Aligned_cols=70  Identities=33%  Similarity=0.541  Sum_probs=60.1

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      +.|.|.+.|.|.|.+.|+|+|..+...   .+.....+.|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~---~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEK---NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC---CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            469999999999999999999998754   3455567899999999999999999999999988777766653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.37  E-value=3.1e-12  Score=94.68  Aligned_cols=68  Identities=35%  Similarity=0.617  Sum_probs=58.4

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      |.|.|.+.|.|.|.+.|+|+|.++....++.+.. ++.|.|.+++.+|+|.|+|.|.|..|... .++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP-EGYLAIRDVGVADQGRYECVARNTIGYAS-VSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECC-CCEEEECcCChhhCEEEEEEEECCCCcEE-EEEEe
Confidence            5799999999999999999999998777776644 45899999999999999999999998876 44443

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.37  E-value=6.1e-12  Score=97.08  Aligned_cols=76  Identities=25%  Similarity=0.391  Sum_probs=62.5

Q ss_pred             CeEEEEEEEeecCCC--eEEEEeCCEeccCCCCCCce---e--ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        141 ETVTFECKASGLPEP--EIHWVHNGKPISQAPPNPRR---K--VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN  213 (745)
Q Consensus       141 ~~~~l~C~~~~~p~~--~v~W~~~g~~~~~~~~~~~~---~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~  213 (745)
                      ++++|.|.+.|.|.+  .++|+|+|..+.......+.   .  ...+.|.|.+++..|+|.|+|.|.|..|....++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            478999999998877  68999999988643322222   1  1346899999999999999999999999999999999


Q ss_pred             Eee
Q psy11701        214 VLA  216 (745)
Q Consensus       214 v~~  216 (745)
                      |..
T Consensus        81 V~~   83 (85)
T cd05854          81 VRG   83 (85)
T ss_pred             EEC
Confidence            875

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.37  E-value=6.1e-12  Score=98.21  Aligned_cols=80  Identities=29%  Similarity=0.517  Sum_probs=66.1

Q ss_pred             eEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCc--eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        135 INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR--RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       135 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l  212 (745)
                      ..+.+|+.+.|.|.+.|.|.+.+.|+|+|..+........  .......|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            3578899999999999999999999999999875432221  12235579999999999999999999999998888877


Q ss_pred             EE
Q psy11701        213 NV  214 (745)
Q Consensus       213 ~v  214 (745)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            64

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.36  E-value=4.8e-12  Score=96.49  Aligned_cols=79  Identities=20%  Similarity=0.393  Sum_probs=64.5

Q ss_pred             CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      |....+.+|+.+.|.|.+.+. .+.+.|+|+|.++...   .+.......|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~---~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~   76 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN---NRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS   76 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC---ceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence            456678999999999999985 5689999999988643   234445678999999999999999999999888776665


Q ss_pred             EEE
Q psy11701        212 VNV  214 (745)
Q Consensus       212 l~v  214 (745)
                      |.|
T Consensus        77 v~V   79 (79)
T cd04973          77 VNV   79 (79)
T ss_pred             EeC
Confidence            543

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.36  E-value=6.8e-12  Score=100.01  Aligned_cols=86  Identities=29%  Similarity=0.556  Sum_probs=67.8

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccC-----CCCCCEEEEEEEEeC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL-----RKSDTGNYGCNATNS  202 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C~~~~~  202 (745)
                      |...|.+..+.+|+++.|.|.+.|.|.+.++|+|+|..+............++.|.|.++     ..+|.|.|+|.|.|.
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~   81 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND   81 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence            456788888999999999999999999999999999988754322233344567878776     689999999999999


Q ss_pred             -CceEE-EEEEEE
Q psy11701        203 -LGYVY-KDVYVN  213 (745)
Q Consensus       203 -~g~~~-~~~~l~  213 (745)
                       .|... ..+.|.
T Consensus        82 ~~G~~~s~~~~l~   94 (95)
T cd05722          82 SLGSIVSRTARLT   94 (95)
T ss_pred             ccCcEEEeeeEEe
Confidence             88764 345554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.36  E-value=7.2e-12  Score=93.28  Aligned_cols=71  Identities=32%  Similarity=0.597  Sum_probs=59.3

Q ss_pred             eEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       142 ~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      ++.|.|.+.|.|.|.++|+|+|..+.....  ......+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~--~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDY--FKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCC--EEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            478999999999999999999998764321  22234567999999999999999999999999988887764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.36  E-value=6.2e-12  Score=95.21  Aligned_cols=74  Identities=32%  Similarity=0.689  Sum_probs=61.2

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV  206 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~  206 (745)
                      |...|.+..+.+|+++.|.|.+.|.|.| +|+|+|+|.++..     ......+.|.|.++  .|+|.|+|.|+|..|..
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~-----~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~   73 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD-----PPAPSPSVLNVPGL--NETSKFSCEAHNAKGVT   73 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC-----CCCCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence            3456888899999999999999999999 7999999998863     11223468999887  47899999999999976


Q ss_pred             EE
Q psy11701        207 YK  208 (745)
Q Consensus       207 ~~  208 (745)
                      .+
T Consensus        74 ~s   75 (81)
T cd05749          74 TS   75 (81)
T ss_pred             Ee
Confidence            54

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.36  E-value=7.5e-12  Score=100.25  Aligned_cols=89  Identities=31%  Similarity=0.632  Sum_probs=68.5

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEeccCCC--CCCceee----cCceEEEccCCCCCCEEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPISQAP--PNPRRKV----GPNRITIENLRKSDTGNYG  196 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~~~~--~~~~~~~----~~~~L~i~~v~~~d~G~Y~  196 (745)
                      +|.+.. +.+..+.+|++++|.|.+.|.|.|.+.|+|+  +..+....  ...++..    ....|.|.+++.+|+|.|+
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            455543 6678899999999999999999999999994  44443211  1123322    2358999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEE
Q psy11701        197 CNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       197 C~~~~~~g~~~~~~~l~v  214 (745)
                      |.|.|..|....++.|.|
T Consensus        81 C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          81 CEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeccCCcceeEEEEeC
Confidence            999999999888877754

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.36  E-value=6e-12  Score=95.52  Aligned_cols=76  Identities=17%  Similarity=0.305  Sum_probs=62.5

Q ss_pred             CeEEEEEEEee--cCCCeEEEEeCCEeccCCCCCCceee-----cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        141 ETVTFECKASG--LPEPEIHWVHNGKPISQAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN  213 (745)
Q Consensus       141 ~~~~l~C~~~~--~p~~~v~W~~~g~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~  213 (745)
                      +++.|.|.+.+  .+.+.+.|+|||+.+.......++..     ..+.|.|.+++..|+|.|+|.|+|..+....++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            47899999976  44679999999999974322333333     356899999999999999999999999999999999


Q ss_pred             Eee
Q psy11701        214 VLA  216 (745)
Q Consensus       214 v~~  216 (745)
                      |..
T Consensus        81 V~~   83 (85)
T cd05853          81 VRG   83 (85)
T ss_pred             Eec
Confidence            985

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.36  E-value=5.5e-12  Score=95.58  Aligned_cols=73  Identities=27%  Similarity=0.582  Sum_probs=57.4

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEE--EEEEEe
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD--VYVNVL  215 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~--~~l~v~  215 (745)
                      ++|.|.+.|.|.|.++|+|+|..+.............+.|.|.++..+|+|.|+|.|.|..|....+  +.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            5799999999999999999999886443222233345689999999999999999999999987544  455443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.36  E-value=6.6e-12  Score=94.41  Aligned_cols=72  Identities=28%  Similarity=0.451  Sum_probs=57.5

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec-C--ceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG-P--NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~-~--~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      +.|.|.+.|.|.|.+.|+|+|..+............ .  ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            479999999999999999999988743211111111 1  26999999999999999999999999988887764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.35  E-value=8.3e-12  Score=98.25  Aligned_cols=83  Identities=29%  Similarity=0.508  Sum_probs=67.0

Q ss_pred             cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec---CceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG---PNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      .|....+.+|+++.|.|.+.|.|.+.+.|++++..+...... .....   ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHY-SVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET   85 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCE-EEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence            366778999999999999999999999999999987643211 11111   13799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy11701        208 KDVYVNV  214 (745)
Q Consensus       208 ~~~~l~v  214 (745)
                      ..+.|.|
T Consensus        86 ~~~~v~~   92 (92)
T cd05891          86 VDVTVSV   92 (92)
T ss_pred             eEEEEEC
Confidence            8777654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.35  E-value=1e-11  Score=91.29  Aligned_cols=68  Identities=29%  Similarity=0.621  Sum_probs=56.6

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l  212 (745)
                      |+++.|.|.+.|.|.|.|+|+|+|..+....   +.......|.|.++.  |+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~---~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKED---EMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCcc---ceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            7899999999999999999999999875322   333455689999874  7999999999999988877665

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.35  E-value=5.8e-12  Score=94.63  Aligned_cols=72  Identities=29%  Similarity=0.487  Sum_probs=61.5

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      |+++.|.|.+.|.|.+.++|+|++..+....   +.. ..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSS---RICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCC---CEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            7899999999999999999999999876322   222 34578999999999999999999999999988887764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.35  E-value=2.5e-12  Score=96.75  Aligned_cols=74  Identities=22%  Similarity=0.338  Sum_probs=59.5

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      +.+.|+...+.+|++++|+|.+.+.|.+ .+.|+|||..|.        ..+..|.|.++ .+|+|.|+|.|.+.   ..
T Consensus         3 v~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~--------~~~~~l~i~~~-~~dsG~Y~C~a~~~---~~   70 (78)
T cd05752           3 VSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE--------TTTNSYRIRAA-NNDSGEYRCQTQGS---SL   70 (78)
T ss_pred             EEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee--------ccCCeEEEeec-ccCCEEeEEECCCC---cC
Confidence            4567888899999999999999988764 799999999884        23568999999 99999999999764   33


Q ss_pred             EEEEEEE
Q psy11701        115 SYSIDLS  121 (745)
Q Consensus       115 ~~~~~l~  121 (745)
                      +..+.|.
T Consensus        71 S~~v~l~   77 (78)
T cd05752          71 SDPVHLE   77 (78)
T ss_pred             CCCEEEe
Confidence            3444444

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.34  E-value=1.1e-11  Score=93.63  Aligned_cols=70  Identities=29%  Similarity=0.490  Sum_probs=57.4

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecC--CCCCeEeccCCcEEEEccCC----CCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPIN--PSDRISQGNYGKSLIIKHVE----FSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~--~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      +.|.|.+.|.|.|.|+|+|++..+.  ...++.+...+++|.|.++.    .+|+|.|+|.|.|..|...+..+.|
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            4799999999999999999999764  34556665556789998864    2469999999999999988877665

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.34  E-value=7.6e-12  Score=93.44  Aligned_cols=67  Identities=24%  Similarity=0.419  Sum_probs=54.5

Q ss_pred             EEEEEeecCCCeeEEEECCEecCCCCCeEe-----c--cCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         53 LFCIFGGTPLPQTIWSKDGVPINPSDRISQ-----G--NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        53 l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~-----~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      |.|.+.|.|.|+++|+|||++|..+.++..     .  ...+.|.|.+++.+|+|.|+|.|.|..|+.. +++.+
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~-~~~~~   76 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDE-KNVSA   76 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccc-eEEEe
Confidence            679999999999999999999986655321     1  1235799999999999999999999999866 44444

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.34  E-value=1.1e-11  Score=100.80  Aligned_cols=92  Identities=27%  Similarity=0.471  Sum_probs=71.3

Q ss_pred             EecCeEEecCceeEe----eCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee--------ecCceEEEccCC-C
Q psy11701        123 LAAPYFTVEPEFINA----AEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK--------VGPNRITIENLR-K  189 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v----~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~--------~~~~~L~i~~v~-~  189 (745)
                      ..+|.|...|....+    ..|.++.|.|.+.|.|.+.+.|+|+|..+.....  ++.        ...+.|.|.++. .
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~--r~~~~~~~~~~~~~s~L~I~~v~~~   79 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNP--RYEETTEHTGTVHTSILTIINVSAA   79 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCC--eEEEEeeccCccceeEEEECcCCcc
Confidence            446777666653333    2568999999999999999999999998864322  221        113579999997 5


Q ss_pred             CCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        190 SDTGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       190 ~d~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      +|.|.|+|.|.|..|.....+.|.+..
T Consensus        80 ~D~G~Y~C~A~N~~G~~~~~i~L~~~~  106 (109)
T cd05773          80 LDYALFTCTAHNSLGEDSLDIQLVSTS  106 (109)
T ss_pred             CCCEEEEEEEEeCCccCcEEEEEEecC
Confidence            999999999999999999999988875

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.34  E-value=6.7e-12  Score=94.96  Aligned_cols=71  Identities=30%  Similarity=0.488  Sum_probs=57.4

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecC---CCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPIN---PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      ++|.|.+.|.|.|+++|+|++..+.   ...++.....++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~-~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSIS-ANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEE-eeEEEEE
Confidence            4799999999999999999986432   233455555566899999999999999999999988865 6677766

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.34  E-value=7.1e-12  Score=94.02  Aligned_cols=70  Identities=36%  Similarity=0.628  Sum_probs=58.3

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      ++|.|.+.|.|.|.+.|+|++..+... +......+..|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSAR-HTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEE-EEEEEEE
Confidence            579999999999999999999887643 444445567899999999999999999999998766 6666665

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.34  E-value=9.1e-12  Score=91.34  Aligned_cols=68  Identities=26%  Similarity=0.377  Sum_probs=56.3

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      +.|.|.+.|.|.|.++|+|||+++....   . ......|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~---~-~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH---T-FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCC---E-EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            4689999999999999999999987431   2 223468999999999999999999999998776655554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.34  E-value=1.3e-11  Score=98.92  Aligned_cols=89  Identities=31%  Similarity=0.552  Sum_probs=69.6

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCC--CCceee----cCceEEEccCCCCCCEEEEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP--NPRRKV----GPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~--~~~~~~----~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      +|.+. .+.+..+.+|+++.|.|.+.|.|.+.+.|++++..+.....  ..+...    ..+.|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            45554 45567889999999999999999999999999866653221  112221    235899999999999999999


Q ss_pred             EEeCCceEEEEEEEEE
Q psy11701        199 ATNSLGYVYKDVYVNV  214 (745)
Q Consensus       199 ~~~~~g~~~~~~~l~v  214 (745)
                      |.|..|....++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999999888877754

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.33  E-value=6.3e-12  Score=95.25  Aligned_cols=70  Identities=29%  Similarity=0.567  Sum_probs=58.1

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCCC----CCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEF----SDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      ++|.|.+.|.|.|+|+|+||+.+|...  .++.....++.|.|.+++.    +|+|.|+|.|.|..|...+..+.|
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            579999999999999999999998643  4555555567899998864    789999999999999888776655

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.33  E-value=1.1e-11  Score=93.51  Aligned_cols=70  Identities=23%  Similarity=0.462  Sum_probs=57.1

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCC--CCCeEeccCCcEEEEccCCC----CCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINP--SDRISQGNYGKSLIIKHVEF----SDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~--~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      +.|.|.+.|.|.|+|+|+|||.++..  ..++.+...+++|.|..+..    .|.|.|+|.|.|..|...++.+.|
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            57999999999999999999998743  33455555567899988865    378999999999999988776665

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.33  E-value=7.7e-12  Score=91.71  Aligned_cols=68  Identities=34%  Similarity=0.416  Sum_probs=53.5

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCCC-CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe-eeEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG-EAKSYSIDL  120 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g-~~~~~~~~l  120 (745)
                      +.|.|.+.|.|.|.+.|+|||.+|... .++.  ..+.+|.|.+++.+|+|.|+|.|.+... ......+.|
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--VDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEE--eCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            479999999999999999999998764 3343  3355899999999999999999998743 333344444

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.33  E-value=1.5e-11  Score=96.22  Aligned_cols=80  Identities=28%  Similarity=0.479  Sum_probs=64.0

Q ss_pred             CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEE-EE
Q psy11701        132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK-DV  210 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~-~~  210 (745)
                      +..+.+.+|++++|.|.+.|. .+.+.|+|++..+....  .......+.|.|.+++.+|+|.|+|.|.|..|.... .+
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~   86 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR--LQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY   86 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC--EEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence            446688999999999999999 89999999999876321  112234568999999999999999999999997554 45


Q ss_pred             EEEE
Q psy11701        211 YVNV  214 (745)
Q Consensus       211 ~l~v  214 (745)
                      .|.|
T Consensus        87 ~L~V   90 (91)
T cd05740          87 ILNV   90 (91)
T ss_pred             EEEe
Confidence            5554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.32  E-value=1.1e-11  Score=97.43  Aligned_cols=76  Identities=30%  Similarity=0.479  Sum_probs=62.5

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCEec--------CCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGVPI--------NPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID  119 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~~i--------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~  119 (745)
                      |++++|.|.+.|.|.|.+.|+|++..+        ....++.... ++.|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~   78 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-TGDLTITNVQRSDVGYYICQTLNVAGSIL-TKAY   78 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC-CCeEEEeeCChhhCEEEEEEEEcCCCceE-EEEE
Confidence            789999999999999999999988653        1234555533 34799999999999999999999999876 6688


Q ss_pred             EEEEec
Q psy11701        120 LSVLAA  125 (745)
Q Consensus       120 l~V~~~  125 (745)
                      |.|...
T Consensus        79 l~V~~~   84 (90)
T cd05726          79 LEVTDV   84 (90)
T ss_pred             EEEeec
Confidence            888764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.32  E-value=7.2e-12  Score=98.39  Aligned_cols=81  Identities=27%  Similarity=0.297  Sum_probs=63.2

Q ss_pred             cceeEecCCcEEEEEEEee-----cCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         41 KKEVALRNKKVELFCIFGG-----TPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g-----~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      +...+.+|+++.|.|.+.|     .|.++|.|+|++..+...  ....+...+..|.|.+++.+|+|.|+|.+.|..|..
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~   86 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM   86 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence            5667889999999999988     688899999998765421  122222345689999999999999999999988876


Q ss_pred             EEEEEEEEE
Q psy11701        114 KSYSIDLSV  122 (745)
Q Consensus       114 ~~~~~~l~V  122 (745)
                      . ..+.|.|
T Consensus        87 ~-~~~~L~v   94 (94)
T cd05756          87 K-VSISLTV   94 (94)
T ss_pred             E-EEEEEEC
Confidence            6 4566654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.32  E-value=1.5e-11  Score=96.28  Aligned_cols=81  Identities=33%  Similarity=0.578  Sum_probs=65.1

Q ss_pred             cCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEE-
Q psy11701        131 EPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK-  208 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~-  208 (745)
                      .|....+.+|+++.|.|.+ .|.|.+.+.|+|+|..+...... .....++.|.|.+++.+|+|.|+|.+.|..|.... 
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   80 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNER-VRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA   80 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCC-EEEccCCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence            4677788999999999998 78899999999999988753221 12233578999999999999999999999987654 


Q ss_pred             EEEE
Q psy11701        209 DVYV  212 (745)
Q Consensus       209 ~~~l  212 (745)
                      .+.|
T Consensus        81 ~~~l   84 (86)
T cd05724          81 AARL   84 (86)
T ss_pred             eEEE
Confidence            3444

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.32  E-value=1.5e-11  Score=97.05  Aligned_cols=81  Identities=30%  Similarity=0.413  Sum_probs=63.1

Q ss_pred             eeEeeccceeEecC---CcEEEEEEEeecCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCC-CCCCEEEEEEEEe
Q psy11701         35 QQYVTRKKEVALRN---KKVELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVE-FSDQGSYTCEVSN  108 (745)
Q Consensus        35 ~~~~~~~~~~v~~G---~~~~l~C~~~g~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~  108 (745)
                      .|+..|.+..+.+|   +.++|.|.+.|.|.|.++|+|++..|...  .++.  ..++.|.|.++. .+|+|.|+|.|.|
T Consensus         3 ~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C~a~N   80 (91)
T cd04967           3 VFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS--LVGGNLVISNPSKAKDAGRYQCLASN   80 (91)
T ss_pred             eeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEE--EECCEEEEecCCccCCCEEEEEEEEc
Confidence            45566677666554   57999999999999999999999998532  3343  334579998887 4999999999999


Q ss_pred             CCeeeEEEE
Q psy11701        109 GVGEAKSYS  117 (745)
Q Consensus       109 ~~g~~~~~~  117 (745)
                      ..|...++.
T Consensus        81 ~~G~~~S~~   89 (91)
T cd04967          81 IVGTVLSRE   89 (91)
T ss_pred             CCCEEEecc
Confidence            999877653

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.31  E-value=1.9e-11  Score=95.25  Aligned_cols=82  Identities=30%  Similarity=0.517  Sum_probs=63.4

Q ss_pred             EecCceeEeeCCCeEEEEEEEeecCCCeEEEEe-CCEeccCCCCCCceee-cC---ceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKV-GP---NRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~g~~~~~~~~~~~~~~-~~---~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ...|.+..+.+|+++.|.|.+.|.|. .++|++ ++..+...   .+... .+   ..|.|.++..+|+|.|+|.|+|..
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~---~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~   79 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS---QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAK   79 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC---CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCC
Confidence            45567788999999999999999898 999998 56666533   22322 22   389999999999999999999999


Q ss_pred             ceE-EEEEEEEE
Q psy11701        204 GYV-YKDVYVNV  214 (745)
Q Consensus       204 g~~-~~~~~l~v  214 (745)
                      |.. ..++.|.+
T Consensus        80 G~~~~~~i~l~~   91 (92)
T cd05866          80 GQTQEATVVLEI   91 (92)
T ss_pred             CcEEEEEEEEEE
Confidence            875 34455543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.31  E-value=1.4e-11  Score=91.74  Aligned_cols=70  Identities=34%  Similarity=0.648  Sum_probs=58.7

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      +.|.|.+.|.|.|.+.|+|++..+....  .......+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR--TKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc--eeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4699999999999999999998765321  223345679999999999999999999999999888888776

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.31  E-value=7.1e-12  Score=98.29  Aligned_cols=85  Identities=25%  Similarity=0.508  Sum_probs=70.4

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEE
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG  584 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a  584 (745)
                      ++|.++++..++.+++.|+|++|...++.+.+|.|+|+............    + ......++|.+|.|++.|+|+|+|
T Consensus         1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~----~-~~~~~~~~i~~L~p~t~Y~~~v~a   75 (85)
T PF00041_consen    1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVT----V-PGNETSYTITGLQPGTTYEFRVRA   75 (85)
T ss_dssp             SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEE----E-ETTSSEEEEESCCTTSEEEEEEEE
T ss_pred             CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeee----e-eeeeeeeeeccCCCCCEEEEEEEE
Confidence            36789999999999999999999877889999999999877654111111    2 445569999999999999999999


Q ss_pred             EecCCCCCCc
Q psy11701        585 YTKAGDGAES  594 (745)
Q Consensus       585 ~n~~G~g~~S  594 (745)
                      .|..|.|++|
T Consensus        76 ~~~~g~g~~S   85 (85)
T PF00041_consen   76 VNSDGEGPPS   85 (85)
T ss_dssp             EETTEEEEEE
T ss_pred             EeCCcCcCCC
Confidence            9999998875

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.31  E-value=1.7e-11  Score=92.20  Aligned_cols=72  Identities=35%  Similarity=0.582  Sum_probs=57.2

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceE-EEEEEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV-YKDVYVNV  214 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~-~~~~~l~v  214 (745)
                      ++|.|.+.|.|.|.++|+|++..+............++.|.|.++..+|+|.|+|.|.|..|.. ...+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4799999999999999999999876432222223356789999999999999999999999975 45566655

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.30  E-value=1.8e-11  Score=92.98  Aligned_cols=68  Identities=28%  Similarity=0.440  Sum_probs=54.9

Q ss_pred             EEEEEeecCCCeeEEEECCEecCCCCCeEe--c-------cCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEE
Q psy11701         53 LFCIFGGTPLPQTIWSKDGVPINPSDRISQ--G-------NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS  121 (745)
Q Consensus        53 l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~--~-------~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~  121 (745)
                      |.|.+.|.|.|+|+|+|||++|....+...  .       ...+.|.|.+++.+|+|.|+|.|.|..|+.. ..+.|.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDS-KSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCee-eEEEee
Confidence            689999999999999999999986654321  1       1234799999999999999999999999877 444443

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.30  E-value=2.9e-11  Score=96.81  Aligned_cols=82  Identities=24%  Similarity=0.384  Sum_probs=65.0

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCC--CCeEeccC------CcEEEEccCCCCC-CEEEEEEEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPS--DRISQGNY------GKSLIIKHVEFSD-QGSYTCEVS  107 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~--~~~~~~~~------~~~L~i~~~~~~d-~G~Y~C~~~  107 (745)
                      ..+....+.+|+++.|.|.+.|.|.| .|.|++++..|...  .++.+...      .++|.|.+++.+| .|.|+|.|.
T Consensus         6 ~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~   85 (98)
T cd05758           6 TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAW   85 (98)
T ss_pred             cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEE
Confidence            34567778999999999999999999 69999999988753  45554322      1479999999955 899999999


Q ss_pred             eCCeeeEEEEEEE
Q psy11701        108 NGVGEAKSYSIDL  120 (745)
Q Consensus       108 ~~~g~~~~~~~~l  120 (745)
                      |..|... ..+.|
T Consensus        86 N~~G~~~-~~~~L   97 (98)
T cd05758          86 NSFGSGT-AIISL   97 (98)
T ss_pred             cCCCccc-EEEEe
Confidence            9999866 33443

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.30  E-value=1.8e-11  Score=92.59  Aligned_cols=73  Identities=30%  Similarity=0.555  Sum_probs=58.0

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee--ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK--VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      +.|.|.+.|.|.|.++|+|+|..........+..  ...+.|.|.++..+|+|.|+|.|.|..|.....+.|.|+
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   75 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL   75 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence            4799999999999999999986432222222222  245689999999999999999999999998888888773

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.30  E-value=1.6e-11  Score=95.46  Aligned_cols=76  Identities=25%  Similarity=0.415  Sum_probs=62.3

Q ss_pred             CeEEEEEEEeecCCC--eEEEEeCCEeccCCCCCCce-----eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        141 ETVTFECKASGLPEP--EIHWVHNGKPISQAPPNPRR-----KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN  213 (745)
Q Consensus       141 ~~~~l~C~~~~~p~~--~v~W~~~g~~~~~~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~  213 (745)
                      +++.|.|.+.|.|.+  .+.|+|+|..+........+     ....+.|.|.+++..|+|.|+|.|.|..|....++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            578999999998877  67999999988643322211     12457899999999999999999999999999999999


Q ss_pred             Eee
Q psy11701        214 VLA  216 (745)
Q Consensus       214 v~~  216 (745)
                      |..
T Consensus        81 V~~   83 (85)
T cd04970          81 VRG   83 (85)
T ss_pred             EEC
Confidence            875

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.30  E-value=1.4e-11  Score=91.94  Aligned_cols=70  Identities=20%  Similarity=0.333  Sum_probs=56.2

Q ss_pred             EEEEEEeecCCCeEEEEeCCEeccCCCCCCce------eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRR------KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN  213 (745)
Q Consensus       144 ~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~  213 (745)
                      .|.|.+.|+|.|+++|+|||+.|.........      ....+.|.|.++..+|+|.|+|.|+|..|....++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            37899999999999999999999754322111      11245899999999999999999999999888776654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.28  E-value=1.7e-11  Score=96.33  Aligned_cols=81  Identities=17%  Similarity=0.202  Sum_probs=65.1

Q ss_pred             eeEeeCCCeEEEEEEEee-----cCCCeEEEEeCCEeccCC-CCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        134 FINAAEEETVTFECKASG-----LPEPEIHWVHNGKPISQA-PPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      ...+.+|+++.|.|.+.+     .|.+.+.|||++..+... ....+.....+.|.|.++..+|+|.|+|.++|..|...
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~   87 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMK   87 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence            445779999999999988     688899999999765421 12234444567999999999999999999999999988


Q ss_pred             EEEEEEE
Q psy11701        208 KDVYVNV  214 (745)
Q Consensus       208 ~~~~l~v  214 (745)
                      ..+.|.|
T Consensus        88 ~~~~L~v   94 (94)
T cd05756          88 VSISLTV   94 (94)
T ss_pred             EEEEEEC
Confidence            8877754

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.28  E-value=1e-11  Score=97.50  Aligned_cols=74  Identities=28%  Similarity=0.501  Sum_probs=56.6

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECC----EecCCCC-Ce-E---------eccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDG----VPINPSD-RI-S---------QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~----~~i~~~~-~~-~---------~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      |++++|.|.+.|.|.|.|+|+|++    ..+.... .. .         .......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999999999999964    3332211 11 1         1122347999999999999999999999998


Q ss_pred             eEEEEEEEEE
Q psy11701        113 AKSYSIDLSV  122 (745)
Q Consensus       113 ~~~~~~~l~V  122 (745)
                      .. .++.|.|
T Consensus        81 ~~-~sa~L~V   89 (90)
T cd04974          81 SH-HSAWLTV   89 (90)
T ss_pred             cc-CCEEEEe
Confidence            76 5677776

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.28  E-value=1.7e-11  Score=92.56  Aligned_cols=72  Identities=28%  Similarity=0.520  Sum_probs=58.4

Q ss_pred             eEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee--ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK--VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       142 ~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      .+.|.|.+.|.|.|.+.|+|+|..+...... ...  ...+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRV-QIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeE-EEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            3689999999999999999999998533211 111  13468999999999999999999999999888877754

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.28  E-value=1.4e-11  Score=94.39  Aligned_cols=79  Identities=22%  Similarity=0.322  Sum_probs=63.9

Q ss_pred             eeccceeEecCCcEEEEEEEe-ecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY  116 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~  116 (745)
                      +.++...|.+|++++|.|.+. +.+.+++.|+|+|..+..      ...+..|.|.+++.+|+|.|+|.+.+..++..+.
T Consensus         4 l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~   77 (83)
T cd05753           4 LQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSE   77 (83)
T ss_pred             EECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc------cCCCceEEECccCHHHCEEEEEEEEeCCceecCC
Confidence            445555799999999999985 456678999999987742      1234579999999999999999999999888777


Q ss_pred             EEEEEE
Q psy11701        117 SIDLSV  122 (745)
Q Consensus       117 ~~~l~V  122 (745)
                      .+.|+|
T Consensus        78 ~~~i~~   83 (83)
T cd05753          78 PVSITV   83 (83)
T ss_pred             CEEEEC
Confidence            777765

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.28  E-value=2e-11  Score=90.58  Aligned_cols=69  Identities=25%  Similarity=0.568  Sum_probs=57.2

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      +.|.|.+.|.|.|.+.|+|++..+...   .......+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG---RAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC---cEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            479999999999999999998766432   122235678999999999999999999999999888877754

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.27  E-value=1.4e-11  Score=92.76  Aligned_cols=67  Identities=28%  Similarity=0.599  Sum_probs=57.5

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCC-CeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPE-PEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      |.+...|....+.+|++++|+|.+.+.|. ..+.|+|||..+..         ..+.|.|.++ .+|+|.|+|.|.+.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~---------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET---------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec---------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            45677889899999999999999998776 47999999998731         3468999999 99999999999874

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.27  E-value=2.4e-11  Score=89.97  Aligned_cols=67  Identities=28%  Similarity=0.648  Sum_probs=56.6

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l  212 (745)
                      +.|.|.+.|.|.|.++|+|+|..+...   .+... .++.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~---~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTES---GKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCC---CCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            479999999999999999999988632   23322 46799999999999999999999999998877665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.27  E-value=3.2e-11  Score=91.05  Aligned_cols=73  Identities=33%  Similarity=0.525  Sum_probs=59.7

Q ss_pred             CCcEEEEEEEeecCCCeeEEEE-CCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~-~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+..... .++|.|.+++.+|.|.|+|.|.|..|... ..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD-NGTLDILITTVKDTGSFTCIASNAAGEAT-ATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec-CCEEEEEECChhhCEEEEEEEECCCCeEE-EEEEEEC
Confidence            7899999999999999999997 677776555554433 45899999999999999999999998765 5566654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.27  E-value=2.9e-11  Score=94.94  Aligned_cols=83  Identities=24%  Similarity=0.367  Sum_probs=66.7

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC----CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS----DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      +|+...+.+|+++.|.|.+.+ |.+.+.|+|++..+...    .++...  ...|.|.+++.+|+|.|+|.+.+..+...
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~   78 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQT   78 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCcccee
Confidence            456678999999999999986 77899999999887654    234432  34599999999999999999998776666


Q ss_pred             EEEEEEEEEe
Q psy11701        115 SYSIDLSVLA  124 (745)
Q Consensus       115 ~~~~~l~V~~  124 (745)
                      ..++.|.|..
T Consensus        79 ~~~~~l~V~~   88 (89)
T cd04979          79 LATYSLNVLE   88 (89)
T ss_pred             EeEEEEEEec
Confidence            6778887753

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.27  E-value=4.9e-11  Score=90.55  Aligned_cols=80  Identities=28%  Similarity=0.464  Sum_probs=68.0

Q ss_pred             CeEEEEEEEEecCCCCcEEEEeeCCeeccCC-CCCeEEE----cCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        323 QSATFRCNAVSDPSLKLSIVWLRGSEPIDFE-SEPRFVQ----SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLT  397 (745)
Q Consensus       323 ~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~----~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~  397 (745)
                      +++.|.|.+.+++.+++.+.|++++.++.+. ...++..    ...+.|.|.+++..|.|.|+|.|.|..+...+++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            4689999999988778999999999999753 2334444    2456899999999999999999999999999999999


Q ss_pred             EeccC
Q psy11701        398 VQVPL  402 (745)
Q Consensus       398 v~~pp  402 (745)
                      |..||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.26  E-value=5.2e-11  Score=90.39  Aligned_cols=72  Identities=33%  Similarity=0.569  Sum_probs=60.7

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCCCC--CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL  123 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~  123 (745)
                      +.|.|.+.|.|.|.+.|+|++..|....  ++.....+..|.|.+++.+|.|.|+|.+.|..|... ..+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDE-DISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcc-eEEEEEEE
Confidence            4699999999999999999999987543  455555566899999999999999999999988877 66777775

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.26  E-value=4.5e-11  Score=90.87  Aligned_cols=70  Identities=21%  Similarity=0.371  Sum_probs=56.3

Q ss_pred             EEEEEEeecCCCeEEEEeCCEeccCCCCCCce-e-------ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRR-K-------VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN  213 (745)
Q Consensus       144 ~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-~-------~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~  213 (745)
                      .|.|.+.|.|.|.++|+|||+.+......... .       ...+.|.|.++..+|+|.|+|.|.|..|.....+.+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            37899999999999999999999754321111 1       1234799999999999999999999999988877664

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.25  E-value=3.2e-11  Score=89.46  Aligned_cols=69  Identities=45%  Similarity=0.712  Sum_probs=61.9

Q ss_pred             EEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        236 VVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV  304 (745)
Q Consensus       236 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v  304 (745)
                      ++|.|.+.|.|.+.+.|++++..+...++.....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            479999999999999999998888777777777789999999999999999999999999888777754

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.25  E-value=6.9e-11  Score=90.09  Aligned_cols=68  Identities=21%  Similarity=0.354  Sum_probs=57.5

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .|.+..+.+|+++.|.|.+.+ +.+++.|++||.+|... .++.+.  .+.|.|.+++.+|+|.|+|.+.+.
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~--~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY--RDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE--CCcEEEeCCCHHHCEEEEEEEEec
Confidence            578889999999999999864 67799999999999865 455443  346999999999999999999865

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.25  E-value=4.7e-11  Score=87.57  Aligned_cols=68  Identities=21%  Similarity=0.417  Sum_probs=54.4

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l  212 (745)
                      +.|.|.+.|.|.|++.|+|+|.++....  .+......+|.|.++..+|+|.|+|.|+|..........+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKC--SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCC--cEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            3689999999999999999999886432  2344456689999999999999999999986555544443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.25  E-value=1.3e-10  Score=100.12  Aligned_cols=112  Identities=17%  Similarity=0.296  Sum_probs=83.6

Q ss_pred             eEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeec-CC-CeEEEeeCCEE
Q psy11701        181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA-PK-PEVNWIHNQKE  258 (745)
Q Consensus       181 ~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~  258 (745)
                      +|.|.+++..|+|.|.|.+.+..+.....+.|.|.. +|.+...+.......|+.++|.|.+.+. |. +.|.|++++..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~-~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE-PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec-CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            689999999999999999999888888888898874 7888777766665689999999999986 43 48999998753


Q ss_pred             cc------Cc----eEEEeecC------cEEEcccCCCCCEEEEEEEEeCC
Q psy11701        259 LT------GG----RYTILETG------DLKITDVAFADSGEYTCFARNKL  293 (745)
Q Consensus       259 ~~------~~----~~~~~~~~------~l~i~~~~~~d~G~Y~C~~~n~~  293 (745)
                      ..      ..    ......++      .|.+.....++...|+|.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            11      11    11122233      35555555556779999998753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.24  E-value=5.2e-11  Score=90.64  Aligned_cols=73  Identities=33%  Similarity=0.553  Sum_probs=57.8

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l  212 (745)
                      |+++.|.|.+.|.|.|.++|++++..+.......... ...+.|.|.++..+|+|.|+|.|.|..|.....+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            7899999999999999999999998876432111111 123689999999999999999999999987766444

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.23  E-value=5.1e-11  Score=92.47  Aligned_cols=78  Identities=27%  Similarity=0.594  Sum_probs=62.8

Q ss_pred             EeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        136 NAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       136 ~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      ....|+++.|.|.+.|.|.+.+.|+|++..+...... ........|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG-ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc-eecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            4567999999999999999999999999887533211 11223468999999999999999999999998877776653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.23  E-value=1.4e-10  Score=91.40  Aligned_cols=82  Identities=34%  Similarity=0.647  Sum_probs=65.3

Q ss_pred             CeEEecCceeEeeC---CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCC-CCCEEEEEEEEe
Q psy11701        126 PYFTVEPEFINAAE---EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK-SDTGNYGCNATN  201 (745)
Q Consensus       126 p~~~~~~~~~~v~~---G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~~  201 (745)
                      |.|...|.+..+.+   |+++.|.|.+.|.|.+.++|+|++..+.... .......++.|.|.++.. +|+|.|+|.|+|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~-~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N   80 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEP-DSRYSLVGGNLVISNPSKAKDAGRYQCLASN   80 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCC-CCCEEEECCEEEEecCCccCCCEEEEEEEEc
Confidence            56777777766544   4679999999999999999999999885332 234555678899998874 999999999999


Q ss_pred             CCceEEE
Q psy11701        202 SLGYVYK  208 (745)
Q Consensus       202 ~~g~~~~  208 (745)
                      ..|...+
T Consensus        81 ~~G~~~S   87 (91)
T cd04967          81 IVGTVLS   87 (91)
T ss_pred             CCCEEEe
Confidence            9997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.23  E-value=4.4e-11  Score=91.48  Aligned_cols=71  Identities=39%  Similarity=0.551  Sum_probs=56.3

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecC--------CCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPIN--------PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~--------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      |+|.|.+.|.|.|.+.|+|++....        ...++.... +++|.|.+++.+|+|.|+|.|.|..|...++.+.|.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS-NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEec-CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            5799999999999999999643211        234454433 4589999999999999999999999988778777764

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.23  E-value=5.4e-11  Score=93.53  Aligned_cols=74  Identities=28%  Similarity=0.506  Sum_probs=57.0

Q ss_pred             CCcEEEEEEEeecCCCeeEEEEC----CEecCCCCC--eEe---------ccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKD----GVPINPSDR--ISQ---------GNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~----~~~i~~~~~--~~~---------~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      |++++|.|.+.|.|.|.|.|+|+    +..+.....  ...         ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999984    444443221  111         111257999999999999999999999998


Q ss_pred             eEEEEEEEEE
Q psy11701        113 AKSYSIDLSV  122 (745)
Q Consensus       113 ~~~~~~~l~V  122 (745)
                      .. .++.|.|
T Consensus        81 ~~-~~a~L~V   89 (90)
T cd05858          81 SH-HSAWLTV   89 (90)
T ss_pred             cc-ceEEEEE
Confidence            66 6677766

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.23  E-value=9.5e-11  Score=92.23  Aligned_cols=84  Identities=25%  Similarity=0.378  Sum_probs=61.8

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe-CCEeccCCCCCCceee---cCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKV---GPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~g~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      +.+.|....+..|+++.|.|.+.|.|. .+.|++ ++..+...... ....   ..+.|+|.+++.+|+|.|+|.|.|..
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   80 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQI-SVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK   80 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCE-EEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence            345677788999999999999999874 999998 66655432111 1111   12489999999999999999999986


Q ss_pred             ce-EEEEEEEE
Q psy11701        204 GY-VYKDVYVN  213 (745)
Q Consensus       204 g~-~~~~~~l~  213 (745)
                      |. ...++.|.
T Consensus        81 g~~~~~sv~l~   91 (92)
T cd04977          81 GTESEATVNLK   91 (92)
T ss_pred             CCcceeEEEEE
Confidence            54 45555554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.23  E-value=6.3e-11  Score=88.82  Aligned_cols=70  Identities=34%  Similarity=0.665  Sum_probs=57.8

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      +.|.|.+.|.|.|.+.|+|++..+....  .........|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR--TKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc--eeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4799999999999999999998775321  122234568999999999999999999999999888887766

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.23  E-value=1.2e-10  Score=88.76  Aligned_cols=70  Identities=16%  Similarity=0.349  Sum_probs=59.5

Q ss_pred             cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .|.+..+..|+++.|.|.+.+ +.+++.|++||..+....  .+....++.|.|.+++.+|+|.|+|.+.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~--~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES--AKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC--ceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            477888999999999999865 678999999999987542  3556667889999999999999999998764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.22  E-value=6.3e-11  Score=93.15  Aligned_cols=75  Identities=25%  Similarity=0.436  Sum_probs=57.8

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeC----CEeccCCCCCC-ceee---------cCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        140 EETVTFECKASGLPEPEIHWVHN----GKPISQAPPNP-RRKV---------GPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~----g~~~~~~~~~~-~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      |+++.|.|.+.|.|.|.++|+|+    |..+....... ....         ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999984    44333111100 0000         1257999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy11701        206 VYKDVYVNV  214 (745)
Q Consensus       206 ~~~~~~l~v  214 (745)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            998888877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.22  E-value=1.4e-10  Score=92.89  Aligned_cols=86  Identities=23%  Similarity=0.324  Sum_probs=66.5

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeec--------CceEEEccCCC-CCCEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVG--------PNRITIENLRK-SDTGN  194 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~--------~~~L~i~~v~~-~d~G~  194 (745)
                      ||.+. .+....+.+|+++.|.|.+.|.|.| .+.|++++..+..... .++...        .+.|.|.++.. +|.|.
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~-~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSS-GRYTVETDPSPGGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCC-CCEEEEEecCCCceEEEEEECCcccccccee
Confidence            45553 4556678999999999999999998 6999999998864321 122221        14799999999 55899


Q ss_pred             EEEEEEeCCceEEEEEEE
Q psy11701        195 YGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       195 Y~C~~~~~~g~~~~~~~l  212 (745)
                      |+|.|.|..|.....+.|
T Consensus        80 Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          80 YNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEEcCCCcccEEEEe
Confidence            999999999987776654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.21  E-value=6e-11  Score=93.08  Aligned_cols=75  Identities=23%  Similarity=0.412  Sum_probs=57.5

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCC----EeccCCCCCC-c---------eeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNG----KPISQAPPNP-R---------RKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g----~~~~~~~~~~-~---------~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      |+.+.|.|.+.|.|.|.|+|+|++    ..+....... .         .......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            788999999999999999999964    2221111100 0         0112357999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy11701        206 VYKDVYVNV  214 (745)
Q Consensus       206 ~~~~~~l~v  214 (745)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            988888877

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.21  E-value=1.1e-10  Score=88.15  Aligned_cols=73  Identities=33%  Similarity=0.567  Sum_probs=59.3

Q ss_pred             CCeEEEEEEEeecCCCeEEEEe-CCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        140 EETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....  .......+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSS--RTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCC--eEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7899999999999999999997 566654221  122335678999999999999999999999999887777654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.20  E-value=1.2e-10  Score=91.57  Aligned_cols=75  Identities=32%  Similarity=0.623  Sum_probs=65.1

Q ss_pred             CceEEEEEEEeecCCCeEEEeeCCEEc---------cCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        233 GKTVVLTCRVFGAPKPEVNWIHNQKEL---------TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLT  303 (745)
Q Consensus       233 g~~~~l~C~~~~~p~~~i~W~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~  303 (745)
                      |+.++|.|.+.+.|.+.+.|++++..+         ...++.+...+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            688999999999999999999987642         24466666677899999999999999999999999999999999


Q ss_pred             Eeec
Q psy11701        304 VKEH  307 (745)
Q Consensus       304 v~~~  307 (745)
                      |...
T Consensus        81 V~~~   84 (90)
T cd05726          81 VTDV   84 (90)
T ss_pred             Eeec
Confidence            9764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.18  E-value=1.8e-10  Score=87.39  Aligned_cols=73  Identities=29%  Similarity=0.516  Sum_probs=59.5

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      +.|.|.+.|.|.+.+.|+|++..+........... ....|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            46999999999999999999998864432211222 33579999999999999999999999999988888775

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.18  E-value=1.7e-10  Score=91.02  Aligned_cols=82  Identities=21%  Similarity=0.250  Sum_probs=60.8

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEEC--------CEecCCCCCeEec---cCCcEEEEccCCCCCCEEEEEEEE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--------GVPINPSDRISQG---NYGKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--------~~~i~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      .++++.+.+|++++|.|.+.+.|.+.+.|++.        +.......|+...   ....+|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            46788999999999999999999999999862        3223334566542   233589999999999999999998


Q ss_pred             eCCeeeEEEEEEEEE
Q psy11701        108 NGVGEAKSYSIDLSV  122 (745)
Q Consensus       108 ~~~g~~~~~~~~l~V  122 (745)
                      ...+.  +....|.|
T Consensus        83 t~~~~--~~~~~l~v   95 (95)
T cd07701          83 TMPVK--TSKAYLTV   95 (95)
T ss_pred             eecCc--cEEEEEEC
Confidence            74332  34455543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.18  E-value=2.6e-10  Score=89.46  Aligned_cols=70  Identities=23%  Similarity=0.327  Sum_probs=56.1

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCEec--------CCCCCeEecc---CCcEEEEccCCCCCCEEEEEEEE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPI--------NPSDRISQGN---YGKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i--------~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      ..+++.+.+|+++.|.|.+.|.|.+.|.|+|++..+        ....|+.+..   ...+|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~   82 (95)
T cd05882           3 VTQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF   82 (95)
T ss_pred             ccccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence            457889999999999999999999999999876532        1234544322   23589999999999999999998


Q ss_pred             e
Q psy11701        108 N  108 (745)
Q Consensus       108 ~  108 (745)
                      .
T Consensus        83 t   83 (95)
T cd05882          83 T   83 (95)
T ss_pred             e
Confidence            6

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.18  E-value=1.2e-10  Score=88.42  Aligned_cols=64  Identities=28%  Similarity=0.461  Sum_probs=52.9

Q ss_pred             EEEEEEEee-cCCCeeEEEECCEecCCCCCeE---e--ccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         51 VELFCIFGG-TPLPQTIWSKDGVPINPSDRIS---Q--GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        51 ~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~---~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      ++|.|.+.| .|.|++.|+|++++|....+..   +  ......|.|.+++.+|.|.|+|.|.|..|...
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   70 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDT   70 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCcee
Confidence            479999999 8999999999999987654321   2  22345899999999999999999999998766

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.17  E-value=1.9e-10  Score=89.62  Aligned_cols=71  Identities=24%  Similarity=0.402  Sum_probs=57.7

Q ss_pred             ceeEecCCcEEEEEEEee-----cCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         42 KEVALRNKKVELFCIFGG-----TPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g-----~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      .+.+.+|+++.|.|...+     +|.|.+.|+||+++|....+...  .++.|.|.+++.+|+|.|+|.+.+..+...
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~   79 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence            356889999999998743     25779999999999986554432  567899999999999999999998766544

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.17  E-value=2.8e-10  Score=87.69  Aligned_cols=76  Identities=17%  Similarity=0.394  Sum_probs=57.2

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCEecCCCC----CeEecc--CCcEEEEccCCCCCCEEEEEEEEeCCe-eeEEEEEEE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGVG-EAKSYSIDL  120 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~----~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~g-~~~~~~~~l  120 (745)
                      |++++|.|.+.|.|.+.+.|+++++.+....    +..+..  ....|.|.+++.+|+|.|+|.|.+..+ ...++++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            8899999999999999999998776543211    111111  235899999999999999999998654 344577888


Q ss_pred             EEE
Q psy11701        121 SVL  123 (745)
Q Consensus       121 ~V~  123 (745)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            775

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.17  E-value=2.1e-10  Score=88.63  Aligned_cols=75  Identities=28%  Similarity=0.486  Sum_probs=57.4

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCE---ec--cCCCCCCce-eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGK---PI--SQAPPNPRR-KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN  213 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~---~~--~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~  213 (745)
                      |+++.|.|.+.|.|.|.++|+|++.   .+  ......... ....+.|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            7899999999999999999999742   11  111111111 22346899999999999999999999999988888776


Q ss_pred             E
Q psy11701        214 V  214 (745)
Q Consensus       214 v  214 (745)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.16  E-value=1.8e-10  Score=88.94  Aligned_cols=73  Identities=26%  Similarity=0.470  Sum_probs=55.7

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCE---e--cCCCC---CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGV---P--INPSD---RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID  119 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~---~--i~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~  119 (745)
                      |++++|.|.+.|.|.|.++|+|++.   .  +....   ++.. .....|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~   78 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLR-ANFP   78 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEE-EEEE
Confidence            7899999999999999999999732   1  11111   1222 2345899999999999999999999999866 5666


Q ss_pred             EEE
Q psy11701        120 LSV  122 (745)
Q Consensus       120 l~V  122 (745)
                      |.|
T Consensus        79 l~v   81 (81)
T cd05765          79 LSV   81 (81)
T ss_pred             EeC
Confidence            654

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.15  E-value=2.5e-10  Score=88.80  Aligned_cols=76  Identities=20%  Similarity=0.387  Sum_probs=61.8

Q ss_pred             eeEeeccceeEecCCcEEEEEEEee-cCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGG-TPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      ..+..|....+.+|++++|.|.+.+ .|.+.+.|++++..+...  .  ...++.|.|.+++.+|+|.|+|.+.|..|..
T Consensus         3 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~--~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~   78 (85)
T cd05754           3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--A--MDFNGILTIRNVQLSDAGTYVCTGSNMLDTD   78 (85)
T ss_pred             EEecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--c--cccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence            3455677788999999999999964 688899999998776432  1  1235689999999999999999999988876


Q ss_pred             E
Q psy11701        114 K  114 (745)
Q Consensus       114 ~  114 (745)
                      .
T Consensus        79 ~   79 (85)
T cd05754          79 E   79 (85)
T ss_pred             e
Confidence            6

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.13  E-value=2.1e-10  Score=88.96  Aligned_cols=74  Identities=22%  Similarity=0.349  Sum_probs=56.1

Q ss_pred             CCcEEEEEEEeec--CCCeeEEEECCEecCCCCC----eEec---cCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEE
Q psy11701         48 NKKVELFCIFGGT--PLPQTIWSKDGVPINPSDR----ISQG---NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI  118 (745)
Q Consensus        48 G~~~~l~C~~~g~--p~~~v~W~~~~~~i~~~~~----~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~  118 (745)
                      |++++|.|.+.|.  |.+.+.|++++..+.....    ....   ...+.|.|.+++.+|+|.|+|.|.|..|... .+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~-~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK-EST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE-EEE
Confidence            7899999999999  7889999998876543211    1111   1235899999999999999999999887755 556


Q ss_pred             EEEE
Q psy11701        119 DLSV  122 (745)
Q Consensus       119 ~l~V  122 (745)
                      .|.|
T Consensus        80 ~v~v   83 (84)
T cd05742          80 KVNI   83 (84)
T ss_pred             EEEE
Confidence            6655

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.13  E-value=2.5e-10  Score=88.45  Aligned_cols=75  Identities=21%  Similarity=0.324  Sum_probs=58.6

Q ss_pred             CCeEEEEEEEeec--CCCeEEEEeCCEeccCCCCCC------ceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        140 EETVTFECKASGL--PEPEIHWVHNGKPISQAPPNP------RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       140 G~~~~l~C~~~~~--p~~~v~W~~~g~~~~~~~~~~------~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      |+++.|.|.+.+.  |.+.++|+++++.+.......      ......+.|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999998  788999999887654221111      11123468999999999999999999999998888877


Q ss_pred             EEE
Q psy11701        212 VNV  214 (745)
Q Consensus       212 l~v  214 (745)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.12  E-value=5.7e-10  Score=84.18  Aligned_cols=67  Identities=28%  Similarity=0.523  Sum_probs=51.2

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCc-eeecCceEEEccCC----CCCCEEEEEEEEeCCceEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLR----KSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~-~~~~~~~L~i~~v~----~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      +.|.|.+.|.|.|.++|+|+|..+........ ....++.|.|..+.    .+|+|.|+|.|+|..|.....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            46999999999999999999997753322222 22356789998764    257999999999999976654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.12  E-value=3.2e-10  Score=86.01  Aligned_cols=69  Identities=20%  Similarity=0.473  Sum_probs=55.3

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCEeccCCCCCCc--ee--ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        143 VTFECKASG-LPEPEIHWVHNGKPISQAPPNPR--RK--VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~--~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      +.|.|.+.| .|.+.+.|+|+|+.+........  ..  ...+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            369999999 89999999999998875433221  11  13468999999999999999999999998776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.11  E-value=6.4e-10  Score=83.93  Aligned_cols=67  Identities=24%  Similarity=0.490  Sum_probs=51.4

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCc-eeecCceEEEccCCC----CCCEEEEEEEEeCCceEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRK----SDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~-~~~~~~~L~i~~v~~----~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      +.|.|.+.|.|.|+++|+|+|..+........ ....++.|.|..+..    .|.|.|+|.|+|..|...+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            47999999999999999999998853322211 222467888887764    37899999999999986654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.11  E-value=3.6e-10  Score=85.58  Aligned_cols=66  Identities=27%  Similarity=0.575  Sum_probs=52.0

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCCCCc-eeecCceEEEccCCC----CCCEEEEEEEEeCCceEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRK----SDTGNYGCNATNSLGYVYK  208 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~-~~~~~~~L~i~~v~~----~d~G~Y~C~~~~~~g~~~~  208 (745)
                      +.|.|.+.|.|.|+++|+|+|..+........ ....++.|.|.++..    +|+|.|+|.|+|..|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            47999999999999999999998864332211 223468999998854    7899999999999997654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.11  E-value=2.2e-10  Score=88.51  Aligned_cols=72  Identities=28%  Similarity=0.316  Sum_probs=58.3

Q ss_pred             ccceeEecCCcEEEEEEE-eecCCCeeEEEECCEec--CCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         40 RKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPI--NPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      .+...+.+|+.+.|.|.. .|.|.+.+.|++++.++  ....+..+...++.|.|.+++.+|+|.|+|.|.+...
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence            344568999999999987 78899999999998764  3334444445567899999999999999999998653

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.10  E-value=1e-09  Score=85.80  Aligned_cols=79  Identities=33%  Similarity=0.528  Sum_probs=62.6

Q ss_pred             eeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe---ccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701         43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID  119 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~  119 (745)
                      ..+.+|++++|.|.+.+.|.+.+.|+|++..+........   ......|.|.+++.+|.|.|+|.+.+..|... .++.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~-~~~~   82 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSIN-HTYK   82 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEE-EEEE
Confidence            3567899999999999999999999999998875543332   12234799999999999999999999888754 5566


Q ss_pred             EEE
Q psy11701        120 LSV  122 (745)
Q Consensus       120 l~V  122 (745)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05729          83 VDV   85 (85)
T ss_pred             EeC
Confidence            543

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.09  E-value=1.5e-09  Score=84.88  Aligned_cols=82  Identities=23%  Similarity=0.441  Sum_probs=64.6

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCC--CCeEecc------CCcEEEEccCCCCC-CEEEEEEEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPS--DRISQGN------YGKSLIIKHVEFSD-QGSYTCEVS  107 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~--~~~~~~~------~~~~L~i~~~~~~d-~G~Y~C~~~  107 (745)
                      .....+.+.+|+++.|.|.+.+.|.| .|.|..++..|..+  .++.+..      ..+.|+|.++..+| .|.|.|.|.
T Consensus         6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~   85 (98)
T cd05898           6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAW   85 (98)
T ss_pred             ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEE
Confidence            66777889999999999999888877 67898888777653  5665433      23589999998877 799999999


Q ss_pred             eCCeeeEEEEEEE
Q psy11701        108 NGVGEAKSYSIDL  120 (745)
Q Consensus       108 ~~~g~~~~~~~~l  120 (745)
                      |..|... ..+.|
T Consensus        86 N~~G~d~-~~i~L   97 (98)
T cd05898          86 NSFGSGT-AIIQL   97 (98)
T ss_pred             eCCccce-EEEEe
Confidence            9999877 33443

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.09  E-value=8e-10  Score=85.95  Aligned_cols=78  Identities=26%  Similarity=0.392  Sum_probs=63.8

Q ss_pred             ecCceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy11701        130 VEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK  208 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~  208 (745)
                      ..|....+.+|++++|.|.+.+ .|.+.+.|++++..+..     ......+.|.|.+++.+|+|.|+|.+.|..|....
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-----~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS-----RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC-----cccccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            3466778899999999999965 67889999999876542     12234578999999999999999999999998887


Q ss_pred             EEEE
Q psy11701        209 DVYV  212 (745)
Q Consensus       209 ~~~l  212 (745)
                      .+.|
T Consensus        81 ~~~l   84 (85)
T cd05754          81 TATL   84 (85)
T ss_pred             EEEE
Confidence            7654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.07  E-value=6.6e-10  Score=84.94  Aligned_cols=71  Identities=27%  Similarity=0.495  Sum_probs=52.4

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCC-----CCCCcee-ecCceEEEccCCCCCCEEEEEEEEeCCceE-EEEEEEE
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQA-----PPNPRRK-VGPNRITIENLRKSDTGNYGCNATNSLGYV-YKDVYVN  213 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~-----~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~-~~~~~l~  213 (745)
                      ++|.|.+.|.|.|.+.|++++......     ....+.. ..+++|.|.++..+|+|.|+|.|.|..|.. ...+.|.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            579999999999999999974322111     0122332 356899999999999999999999999876 3445544

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.07  E-value=1.2e-09  Score=84.43  Aligned_cols=74  Identities=39%  Similarity=0.692  Sum_probs=61.7

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      +...+.+|++++|.|.+.+.|..++.|++++..+...        ...|.|.+++.+|.|.|+|.+.+..+...+..+.|
T Consensus         7 ~~~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v   78 (80)
T PF13895_consen    7 SPQSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV   78 (80)
T ss_dssp             ESSEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred             cceEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence            3367999999999999999888999999999887621        11278889999999999999999777777777777


Q ss_pred             EE
Q psy11701        121 SV  122 (745)
Q Consensus       121 ~V  122 (745)
                      .|
T Consensus        79 ~V   80 (80)
T PF13895_consen   79 TV   80 (80)
T ss_dssp             EE
T ss_pred             eC
Confidence            76

...

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.07  E-value=1.3e-09  Score=85.66  Aligned_cols=83  Identities=20%  Similarity=0.424  Sum_probs=63.9

Q ss_pred             CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCC-CCceeecCceEEEccCCCCCCEEEEEEEEeCC-ceEEEE
Q psy11701        132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP-NPRRKVGPNRITIENLRKSDTGNYGCNATNSL-GYVYKD  209 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-g~~~~~  209 (745)
                      |....+.+|+++.|.|.+.+ |.+.+.|+|++..+..... ..+.....+.|.|.+++.+|+|.|+|.+.+.. +.....
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~   81 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT   81 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence            55667899999999999987 7789999999987754321 12344455679999999999999999998654 445555


Q ss_pred             EEEEEe
Q psy11701        210 VYVNVL  215 (745)
Q Consensus       210 ~~l~v~  215 (745)
                      ..|.|.
T Consensus        82 ~~l~V~   87 (89)
T cd04979          82 YSLNVL   87 (89)
T ss_pred             EEEEEe
Confidence            777765

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.07  E-value=9.9e-10  Score=84.61  Aligned_cols=76  Identities=26%  Similarity=0.452  Sum_probs=56.9

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCC-c----eeecCceEEEccCCCCCCEEEEEEEEeCCc--eEEEEEEE
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNP-R----RKVGPNRITIENLRKSDTGNYGCNATNSLG--YVYKDVYV  212 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~-~----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g--~~~~~~~l  212 (745)
                      |++++|.|.+.+.|.+.+.|++.++......... .    .....+.|.|.+++.+|+|.|+|.|+|..+  ....++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7899999999999999999999876433211100 1    111246899999999999999999998766  56666777


Q ss_pred             EEe
Q psy11701        213 NVL  215 (745)
Q Consensus       213 ~v~  215 (745)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.05  E-value=8.1e-10  Score=83.74  Aligned_cols=64  Identities=27%  Similarity=0.463  Sum_probs=50.3

Q ss_pred             EEEEEEEee-cCCCeeEEEECCEecCCC----CCeEec--cCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         51 VELFCIFGG-TPLPQTIWSKDGVPINPS----DRISQG--NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        51 ~~l~C~~~g-~p~~~v~W~~~~~~i~~~----~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      +.|.|.+.+ .|.+.++|+|+|+.|...    .++...  ...+.|.|.+++.+|+|.|+|.+.|..|...
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~   71 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS   71 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCcee
Confidence            479999864 688899999999998642    222222  2346899999999999999999999988765

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.05  E-value=1.1e-09  Score=86.02  Aligned_cols=70  Identities=21%  Similarity=0.360  Sum_probs=53.5

Q ss_pred             CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccC-CC----CCCceee-----cCceEEEccCCCCCCEEEEEEEEe
Q psy11701        132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ-AP----PNPRRKV-----GPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~-~~----~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      ..+..+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..    .+.++..     ....|.|.++..+|+|.|+|.+..
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            3567889999999999999999999999998764310 00    1122221     246899999999999999999986

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.04  E-value=1e-09  Score=84.16  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             cCceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        131 EPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      ++....+.+|++++|.|.+.+ .+...+.|+|+|..+..       ......|.|.+++.+|+|.|+|.+.+..+...
T Consensus         5 ~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753           5 QVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             ECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-------cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence            344457899999999999854 55668999999987642       12346899999999999999999999887543

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.03  E-value=7e-10  Score=85.79  Aligned_cols=73  Identities=21%  Similarity=0.327  Sum_probs=57.4

Q ss_pred             ceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        133 EFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      ....+.+|+.+.|.|.. .|.|.+.+.|++++..+.......++.. .++.|.|.+|+.+|+|.|+|.|+|....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            34568899999999987 6789999999999876532222223333 4799999999999999999999987643

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.01  E-value=3.3e-09  Score=82.94  Aligned_cols=80  Identities=29%  Similarity=0.527  Sum_probs=62.5

Q ss_pred             eEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce--eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        135 INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR--KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       135 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l  212 (745)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+.........  ......|.|.++..+|+|.|+|.+.|..|....++.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            34668999999999999999999999999887633211111  1123479999999999999999999999988777766


Q ss_pred             EE
Q psy11701        213 NV  214 (745)
Q Consensus       213 ~v  214 (745)
                      .|
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            53

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.01  E-value=1.9e-09  Score=81.75  Aligned_cols=69  Identities=23%  Similarity=0.530  Sum_probs=52.7

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCEeccCCC-CCCceee----cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        143 VTFECKASG-LPEPEIHWVHNGKPISQAP-PNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~-~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      +.|+|.+.+ .|.+.++|+++|+.+.... ...+...    ..+.|.|.++..+|+|.|+|.+.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            469999864 6778999999999886432 1122211    2367999999999999999999999998776654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.00  E-value=2.1e-09  Score=78.42  Aligned_cols=63  Identities=37%  Similarity=0.710  Sum_probs=52.9

Q ss_pred             cCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         47 RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        47 ~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      +|++++|.|.+.+.|.+.+.|++++..+.  ...........|.|.+++.+|+|.|+|.+.+..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            58999999999888888999999999887  3333345566899999999999999999987643

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.00  E-value=5.3e-09  Score=81.79  Aligned_cols=86  Identities=23%  Similarity=0.388  Sum_probs=66.0

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceee--------cCceEEEccCCCCC-CEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKV--------GPNRITIENLRKSD-TGN  194 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d-~G~  194 (745)
                      ||.+ .......+.+|+++.|.|.+.+.|.| .|.|.+++..+..... .++..        ..+.|.|.++...| .|.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~-~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTS-ERYTVERTSTGSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCC-CCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence            4544 55667788999999999999777776 7899998887764321 23322        23589999998866 799


Q ss_pred             EEEEEEeCCceEEEEEEE
Q psy11701        195 YGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       195 Y~C~~~~~~g~~~~~~~l  212 (745)
                      |.|.|.|..|.....+.|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999998877655

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.00  E-value=2.7e-09  Score=83.16  Aligned_cols=75  Identities=20%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             eEeeCCCeEEEEEEEee-----cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        135 INAAEEETVTFECKASG-----LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       135 ~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      +.+.+|.++.|.|...+     +|.+.+.|+|+++++....   ......+.|.|.++..+|+|.|+|.+.|..+.....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~---~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~   81 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDR---KRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYN   81 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCc---cEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence            45788999999998743     2577999999999987432   222367899999999999999999999988776554


Q ss_pred             EEE
Q psy11701        210 VYV  212 (745)
Q Consensus       210 ~~l  212 (745)
                      +..
T Consensus        82 ~t~   84 (92)
T cd05757          82 VTR   84 (92)
T ss_pred             EEE
Confidence            433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=98.98  E-value=1.8e-09  Score=84.48  Aligned_cols=84  Identities=32%  Similarity=0.518  Sum_probs=69.6

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEe
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAF  483 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~  483 (745)
                      +|.++.+.. .+.+++.|.|+++.  ..++.+.+|.|+|+...... ......+ ......++|.+|.|++.|.|+|+|.
T Consensus         2 ~P~~l~v~~-~~~~sv~v~W~~~~--~~~~~~~~y~v~~~~~~~~~-~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~v~a~   76 (85)
T PF00041_consen    2 APENLSVSN-ISPTSVTVSWKPPS--SGNGPITGYRVEYRSVNSTS-DWQEVTV-PGNETSYTITGLQPGTTYEFRVRAV   76 (85)
T ss_dssp             SSEEEEEEE-ECSSEEEEEEEESS--STSSSESEEEEEEEETTSSS-EEEEEEE-ETTSSEEEEESCCTTSEEEEEEEEE
T ss_pred             cCcCeEEEE-CCCCEEEEEEECCC--CCCCCeeEEEEEEEecccce-eeeeeee-eeeeeeeeeccCCCCCEEEEEEEEE
Confidence            678999988 89999999999965  66788999999998776643 3445555 5556699999999999999999999


Q ss_pred             cCCCCCCCC
Q psy11701        484 NGAYNGPPS  492 (745)
Q Consensus       484 n~~G~g~~S  492 (745)
                      |..|.|++|
T Consensus        77 ~~~g~g~~S   85 (85)
T PF00041_consen   77 NSDGEGPPS   85 (85)
T ss_dssp             ETTEEEEEE
T ss_pred             eCCcCcCCC
Confidence            999988664

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.98  E-value=1.3e-09  Score=84.09  Aligned_cols=76  Identities=20%  Similarity=0.224  Sum_probs=61.7

Q ss_pred             CeeEeeccceeEecCCcEEEEEE-EeecCCCeeEEEECCEe-cCCCCCeEeccCCcEEEEccCCCCCCE-EEEEEEEeCC
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCI-FGGTPLPQTIWSKDGVP-INPSDRISQGNYGKSLIIKHVEFSDQG-SYTCEVSNGV  110 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~-~~g~p~~~v~W~~~~~~-i~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~  110 (745)
                      .......+.+.|.+|+.+.|.|. ..|.|.|.|.|++++.. +....|+..+.. +.|.|.+++.+|.| .|.|.|.+..
T Consensus         4 ~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~-GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845           4 KWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN-GNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             cCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC-ceEEEEEEehhhCCCCeEEEEEccc
Confidence            33334567789999999999998 59999999999987644 455667776554 68999999999999 7999998764

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.96  E-value=3.5e-09  Score=82.09  Aligned_cols=80  Identities=21%  Similarity=0.323  Sum_probs=59.0

Q ss_pred             eeEecCCcEEEEEEE-ee----cCCCeeEEEECCEecCCCC-CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE--
Q psy11701         43 EVALRNKKVELFCIF-GG----TPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK--  114 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~-~g----~p~~~v~W~~~~~~i~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~--  114 (745)
                      +.+..|.+..|.|.- .+    .+.+.++||||+++|.... ++.....+..|.|.++..+|+|.|+|.+.+..|...  
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~   84 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN   84 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence            457789999999974 33    3567999999999987543 344323456899999999999999999998755433  


Q ss_pred             -EEEEEEEE
Q psy11701        115 -SYSIDLSV  122 (745)
Q Consensus       115 -~~~~~l~V  122 (745)
                       ++.+.|.|
T Consensus        85 vtr~~~l~v   93 (95)
T cd05897          85 ITRIIKLRI   93 (95)
T ss_pred             EEEEEEEEE
Confidence             34445544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.96  E-value=6.5e-09  Score=81.09  Aligned_cols=78  Identities=21%  Similarity=0.413  Sum_probs=57.3

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEEC--CEe----cCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe-CCeeeE
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKD--GVP----INPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN-GVGEAK  114 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~----i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~g~~~  114 (745)
                      .+.+.+|++++|.|.. +.|.+.+.|+|+  +..    +....++..  .++.|.|.+++.+|+|.|+|.+.+ ..+...
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~   81 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH--TERGLLLRSLQRSDAGVYTCTAVEHSFSQTL   81 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE--ecCeEEEeeCChhHCEEEEEEEEccCCeEEE
Confidence            4568899999999997 478889999983  222    112344443  335699999999999999999984 555455


Q ss_pred             EEEEEEEEE
Q psy11701        115 SYSIDLSVL  123 (745)
Q Consensus       115 ~~~~~l~V~  123 (745)
                       ..+.|.|.
T Consensus        82 -~~~~l~v~   89 (91)
T cd05871          82 -AKYTLHVI   89 (91)
T ss_pred             -EEEEEEEe
Confidence             46777775

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.96  E-value=2.8e-09  Score=82.89  Aligned_cols=70  Identities=24%  Similarity=0.340  Sum_probs=52.1

Q ss_pred             eeEecCCcEEEEEEEeecCCCeeEEEECCEec-C-------------CCCCeEe-----ccCCcEEEEccCCCCCCEEEE
Q psy11701         43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPI-N-------------PSDRISQ-----GNYGKSLIIKHVEFSDQGSYT  103 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i-~-------------~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~  103 (745)
                      +.+.+|++|+|.|.+.+.+.+.+.|+++++.. .             ...|+..     +.....|+|.+++.+|+|.|+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            45789999999999998898999999876332 1             1122221     122247999999999999999


Q ss_pred             EEEEeCCee
Q psy11701        104 CEVSNGVGE  112 (745)
Q Consensus       104 C~~~~~~g~  112 (745)
                      |.+.+..++
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999876654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.95  E-value=6.7e-09  Score=82.69  Aligned_cols=82  Identities=20%  Similarity=0.291  Sum_probs=58.2

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCEe-c-------CCCCCeEec---cCCcEEEEccCCCCCCEEEEEEEE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVP-I-------NPSDRISQG---NYGKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~-i-------~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      .+++..+.+|++++|.|.+.+.+.+.+.|++.+.. +       ....|+...   .....|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~   82 (95)
T cd05717           3 VTQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY   82 (95)
T ss_pred             cCCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence            45778899999999999998888889999852211 1       113455442   223479999999999999999998


Q ss_pred             eCCeeeEEEEEEEEE
Q psy11701        108 NGVGEAKSYSIDLSV  122 (745)
Q Consensus       108 ~~~g~~~~~~~~l~V  122 (745)
                      .....  +..+.|+|
T Consensus        83 ~~~~~--~~~~~~~v   95 (95)
T cd05717          83 TMPVQ--TAKATVTV   95 (95)
T ss_pred             cCCCc--eEEEEEEC
Confidence            75432  34445543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.94  E-value=5e-09  Score=82.67  Aligned_cols=82  Identities=17%  Similarity=0.319  Sum_probs=57.7

Q ss_pred             cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEecc---C--CCCCCceee-----cCceEEEccCCCCCCEEEEEEEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS---Q--APPNPRRKV-----GPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~---~--~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      .+.+..+.+|+++.|.|.+.+.|.+.+.|++.+..+.   .  .....++..     ...+|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            3567789999999999999999999999986432210   0  001223321     33689999999999999999998


Q ss_pred             eCCceEEEEEEEE
Q psy11701        201 NSLGYVYKDVYVN  213 (745)
Q Consensus       201 ~~~g~~~~~~~l~  213 (745)
                      +..+ ....+.|.
T Consensus        83 t~~~-~~~~~~l~   94 (95)
T cd07701          83 TMPV-KTSKAYLT   94 (95)
T ss_pred             eecC-ccEEEEEE
Confidence            7433 34445554

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.91  E-value=7.7e-09  Score=75.43  Aligned_cols=63  Identities=38%  Similarity=0.759  Sum_probs=52.6

Q ss_pred             CCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       139 ~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +|+++.|.|.+.+.+.+.+.|++++..+.   ...........|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC---CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            58999999998888888999999998877   1223344567899999999999999999988654

>smart00409 IG Immunoglobulin

Probab=98.91  E-value=2.4e-08  Score=78.28  Aligned_cols=82  Identities=33%  Similarity=0.551  Sum_probs=66.1

Q ss_pred             ccceeEecCCcEEEEEEEeecCCCeeEEEEC-CEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701         40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKD-GVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGEAKSY  116 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~-~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~  116 (745)
                      |....+.+|+++.|.|.+.+.+.+.+.|+++ ++.+....++......  .+|.|.+++.+|.|.|+|.+.+..+.....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00409        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            3456788999999999998887889999998 8888756666554443  689999999999999999999776665533


Q ss_pred             EEEEEE
Q psy11701        117 SIDLSV  122 (745)
Q Consensus       117 ~~~l~V  122 (745)
                       +.|.|
T Consensus        81 -~~l~V   85 (86)
T smart00409       81 -TTLTV   85 (86)
T ss_pred             -EEEEE
Confidence             66655

>smart00410 IG_like Immunoglobulin like

Probab=98.91  E-value=2.4e-08  Score=78.28  Aligned_cols=82  Identities=33%  Similarity=0.551  Sum_probs=66.1

Q ss_pred             ccceeEecCCcEEEEEEEeecCCCeeEEEEC-CEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701         40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKD-GVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGEAKSY  116 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~-~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~  116 (745)
                      |....+.+|+++.|.|.+.+.+.+.+.|+++ ++.+....++......  .+|.|.+++.+|.|.|+|.+.+..+.....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00410        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            3456788999999999998887889999998 8888756666554443  689999999999999999999776665533


Q ss_pred             EEEEEE
Q psy11701        117 SIDLSV  122 (745)
Q Consensus       117 ~~~l~V  122 (745)
                       +.|.|
T Consensus        81 -~~l~V   85 (86)
T smart00410       81 -TTLTV   85 (86)
T ss_pred             -EEEEE
Confidence             66655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.90  E-value=1e-08  Score=79.05  Aligned_cols=78  Identities=37%  Similarity=0.739  Sum_probs=59.4

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc-
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG-  204 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g-  204 (745)
                      |.+...+  ..+.+|++++|.|.+.+.|...+.|++++..+...         ...|.+.++..+|+|.|+|.+.+..+ 
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~g~y~C~~~~~~~~   70 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS---------QNGLFIPNVSPEDSGNYTCRASNGSGS   70 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE---------SSEEEESSEEGGGTEEEEEEEEETTEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee---------eeeeeeeeeccccCEEEEEEEEeCCCC
Confidence            4444444  56899999999999999888999999999877622         22278899999999999999999654 


Q ss_pred             eEEEEEEEEE
Q psy11701        205 YVYKDVYVNV  214 (745)
Q Consensus       205 ~~~~~~~l~v  214 (745)
                      ..+..+.|.|
T Consensus        71 ~~s~~~~v~V   80 (80)
T PF13895_consen   71 NTSTSVNVTV   80 (80)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEeeeEEeeC
Confidence            3344455544

...

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.89  E-value=1.1e-08  Score=79.00  Aligned_cols=75  Identities=29%  Similarity=0.333  Sum_probs=53.7

Q ss_pred             CCcEEEEEEEeecCC--CeeEEEECCEecCCC---C--CeEe---ccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEE
Q psy11701         48 NKKVELFCIFGGTPL--PQTIWSKDGVPINPS---D--RISQ---GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYS  117 (745)
Q Consensus        48 G~~~~l~C~~~g~p~--~~v~W~~~~~~i~~~---~--~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~  117 (745)
                      |++++|.|.+.+.+.  ..+.|.+.+..+...   .  +...   ....+.|.|.+++.+|+|.|+|.|.|..|... ..
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~-~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK-NS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec-cc
Confidence            789999999987654  478999877643211   1  1111   11235899999999999999999999877555 55


Q ss_pred             EEEEEE
Q psy11701        118 IDLSVL  123 (745)
Q Consensus       118 ~~l~V~  123 (745)
                      ..|.|.
T Consensus        80 t~~~V~   85 (86)
T cd05862          80 TIVIVH   85 (86)
T ss_pred             EEEEEe
Confidence            666664

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.88  E-value=1.5e-08  Score=76.60  Aligned_cols=65  Identities=25%  Similarity=0.454  Sum_probs=55.5

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      +...+.+|+++.|.|...+. .+++.|++++.+|..+.++.....|  |.|.+++.+|+|.|.|.+.-
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G--LlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG--LLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC--CEEEECCHhhCEEEEEEEec
Confidence            56789999999999999855 5599999999999877777655554  88999999999999999974

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.88  E-value=2.1e-08  Score=78.29  Aligned_cols=80  Identities=19%  Similarity=0.427  Sum_probs=58.6

Q ss_pred             eEeeCCCeEEEEEEEeecCCCeEEEEeCC--EeccCC-CCCCceeecCceEEEccCCCCCCEEEEEEEE-eCCceEEEEE
Q psy11701        135 INAAEEETVTFECKASGLPEPEIHWVHNG--KPISQA-PPNPRRKVGPNRITIENLRKSDTGNYGCNAT-NSLGYVYKDV  210 (745)
Q Consensus       135 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~g--~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~-~~~g~~~~~~  210 (745)
                      +...+|+++.|.|... .|.+.+.|++.+  ...... ....+.....+.|.|.++..+|+|.|+|.+. +..+.....+
T Consensus         6 ~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~   84 (91)
T cd05871           6 VYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY   84 (91)
T ss_pred             EEEecCCcEEEEEECC-CCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence            4578999999999964 688899999843  222111 1123444556789999999999999999998 5666566667


Q ss_pred             EEEEe
Q psy11701        211 YVNVL  215 (745)
Q Consensus       211 ~l~v~  215 (745)
                      .|.|.
T Consensus        85 ~l~v~   89 (91)
T cd05871          85 TLHVI   89 (91)
T ss_pred             EEEEe
Confidence            77775

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.87  E-value=3.7e-09  Score=77.18  Aligned_cols=59  Identities=32%  Similarity=0.586  Sum_probs=46.8

Q ss_pred             CCcEEEEEEE-eecCCCeeEEEECCEecCCCCCeEeccCCcE----EEEccCCCCCCEEEEEEE
Q psy11701         48 NKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKS----LIIKHVEFSDQGSYTCEV  106 (745)
Q Consensus        48 G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~~  106 (745)
                      |++++|.|.+ .+.+...+.|+|++..+...........+..    |.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            8999999999 6677789999999887664444333333332    999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.84  E-value=3.1e-08  Score=76.95  Aligned_cols=71  Identities=13%  Similarity=0.173  Sum_probs=53.6

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCEec--------CCCCCeEecc---CCcEEEEccCCCCCCEEEEEEEE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPI--------NPSDRISQGN---YGKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i--------~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      ..+++.+.+|++++|.|.+.+.....+.|++-+..+        ....|+....   ...+|+|++++.+|+|.|+|.+.
T Consensus         3 ~~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~   82 (95)
T cd05881           3 VTEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY   82 (95)
T ss_pred             ccCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence            346788999999999999987766667777644221        3456776443   22379999999999999999997


Q ss_pred             eC
Q psy11701        108 NG  109 (745)
Q Consensus       108 ~~  109 (745)
                      ..
T Consensus        83 t~   84 (95)
T cd05881          83 TD   84 (95)
T ss_pred             cc
Confidence            53

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.84  E-value=2.3e-08  Score=77.46  Aligned_cols=81  Identities=16%  Similarity=0.166  Sum_probs=60.7

Q ss_pred             eeEeeCCCeEEEEEEE-e----------ecCCCeEEEEeCCEeccCCCC----CCceeecCceEEEccCCCCCCEEEEEE
Q psy11701        134 FINAAEEETVTFECKA-S----------GLPEPEIHWVHNGKPISQAPP----NPRRKVGPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~-~----------~~p~~~v~W~~~g~~~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      ...+.+|+.+.|+|.. .          ......+.|+|++..+.....    ..+.......|.|.++..+|+|.|+|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            3467899999999986 1          112348999999755543221    136666788999999999999999999


Q ss_pred             EEeCCceEEEEEEEEE
Q psy11701        199 ATNSLGYVYKDVYVNV  214 (745)
Q Consensus       199 ~~~~~g~~~~~~~l~v  214 (745)
                      ++|........+.|+|
T Consensus        89 ~rN~t~C~~~~i~l~V  104 (104)
T cd05896          89 LRNSTYCMKVSMSLTV  104 (104)
T ss_pred             ECCCCcceEEEEEEEC
Confidence            9998877766665543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.83  E-value=2.8e-08  Score=76.82  Aligned_cols=76  Identities=26%  Similarity=0.357  Sum_probs=56.7

Q ss_pred             CCeEEEEEEEeecC--CCeEEEEeCCEeccCCCCCC--c-----eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        140 EETVTFECKASGLP--EPEIHWVHNGKPISQAPPNP--R-----RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV  210 (745)
Q Consensus       140 G~~~~l~C~~~~~p--~~~v~W~~~g~~~~~~~~~~--~-----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~  210 (745)
                      |+++.|.|.+.+.+  ...+.|.+.++.+.......  +     .....+.|.|.+++.+|+|.|+|.|.|..|......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            78999999998754  45889998776542211000  1     112346899999999999999999999988888888


Q ss_pred             EEEEe
Q psy11701        211 YVNVL  215 (745)
Q Consensus       211 ~l~v~  215 (745)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            87775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>TIGR00864 PCC polycystin cation channel protein

Probab=98.81  E-value=0.0013  Score=79.69  Aligned_cols=320  Identities=18%  Similarity=0.184  Sum_probs=180.9

Q ss_pred             EecCCcEEEEEEE-eecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEE--EeCCeeeEEEEEEEE
Q psy11701         45 ALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEV--SNGVGEAKSYSIDLS  121 (745)
Q Consensus        45 v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~--~~~~g~~~~~~~~l~  121 (745)
                      +..|..+.|.=.. +|.+ ..+.|..++..-.         .++..   ..+..+.|.|.-.+  .|..+... .+..+.
T Consensus      1797 ~~ag~~v~F~a~vstGsn-Vsw~W~f~~g~s~---------~gk~v---~~Tf~~aG~ytV~L~AsN~vs~~~-~s~~~~ 1862 (2740)
T TIGR00864      1797 FAADSSVCFQGELATGTN-VSWCWAIDGGSSK---------MGKHA---CMTFPDAGTFAIRLNASNAVSGKS-ASREFF 1862 (2740)
T ss_pred             eecCcEEEEEEEccCCCe-eEEEEEeCCCCcc---------cccee---EEecCCCeEEEEEEEEEcccCcce-eeeeEE
Confidence            4455666555543 3332 2666766543211         11111   14558899997655  56655444 566788


Q ss_pred             EEecC-eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEE--E
Q psy11701        122 VLAAP-YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGC--N  198 (745)
Q Consensus       122 V~~~p-~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~  198 (745)
                      |..++ .+........+..|+.++|.+.....+...+.|..++..-....       .+..+ ..  ....-|.|..  .
T Consensus      1863 VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t-------~~~t~-~H--sY~~~G~Y~VtV~ 1932 (2740)
T TIGR00864      1863 AEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ-------PGPRF-SH--SFPRVDDHMVNLR 1932 (2740)
T ss_pred             EEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec-------CCCeE-Ee--ecCCCCcEEEEEE
Confidence            88777 34555666678899999999999877888999998753221100       01111 11  2233455554  4


Q ss_pred             EEeCCceEEEEEEEEEeecCCeeeeCCCce-EEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEccc
Q psy11701        199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDE-YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV  277 (745)
Q Consensus       199 ~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~-~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~  277 (745)
                      +.|..+.......+.|+..-..+.+...-. .+..|+..+|.-.+....+..+.|+.+-..+.++.........++... 
T Consensus      1933 A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~- 2011 (2740)
T TIGR00864      1933 AKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTA- 2011 (2740)
T ss_pred             EEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEcc-
Confidence            557777777777777765222222222212 257799999999987666678999876443333222222222222222 


Q ss_pred             CCCCCEEEEE--EEEeCCceEEEEEEEEEeecceee-cCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCC
Q psy11701        278 AFADSGEYTC--FARNKLGTAQGSGSLTVKEHTHIT-DQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES  354 (745)
Q Consensus       278 ~~~d~G~Y~C--~~~n~~g~~~~~~~l~v~~~p~~~-~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~  354 (745)
                        ...|.|..  .|.|..+.......+.|+.+.... ..........+..+.+.|.+...+. ++.+.|..++.......
T Consensus      2012 --~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~-~v~~~WDFGDGt~~~~T 2088 (2740)
T TIGR00864      2012 --EAAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPN-FMACHWDFGDGSAGQDT 2088 (2740)
T ss_pred             --CCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCC-cEEEEEEecCCCCcccc
Confidence              36788866  566877777666677776654211 1111123445778999998865433 48899998754332110


Q ss_pred             CCeEEEcCCeEEEEecCCCCCCEEEE--EEEEeCCceEEEEEEEEEeccC
Q psy11701        355 EPRFVQSNDYSLTVTKSSELDSGQYT--CRAQTELDFIEAQATLTVQVPL  402 (745)
Q Consensus       355 ~~~~~~~~~~~l~i~~~~~~~~g~y~--c~a~n~~g~~~~~~~l~v~~pp  402 (745)
                      .       ...  +... -...|.|.  ..|.|......+...+.|...+
T Consensus      2089 ~-------~~~--~sHt-Y~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl~ 2128 (2740)
T TIGR00864      2089 D-------EPR--AEHE-YLHPGDYRVQVNASNLVSFFSAHAEINVQVLA 2128 (2740)
T ss_pred             C-------Cce--eEEE-ecCCccEEEEEEEEcceeeeeeEEEEEEEEec
Confidence            0       001  1111 11235555  5677888777777777776554

Note: this model has been restricted to the amino half because for technical reasons.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.80  E-value=2.7e-08  Score=73.99  Aligned_cols=64  Identities=20%  Similarity=0.340  Sum_probs=49.4

Q ss_pred             eEEEEEEEe-ecCCCeEEEEeCCEeccCCCC---CCceeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        142 TVTFECKAS-GLPEPEIHWVHNGKPISQAPP---NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       142 ~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      .+.|+|... +.|+++|+||||+++|.....   ........+.|.|.....+|++.|+|+|.|..+.
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            378999995 589999999999999975321   1111123457999999999999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.79  E-value=7.8e-08  Score=74.34  Aligned_cols=83  Identities=16%  Similarity=0.241  Sum_probs=66.3

Q ss_pred             ceeEeeCCCeEEEEEEEeecCCCe-EEEEeCCEeccCCCCCCceee------cCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        133 EFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKV------GPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~~p~~~-v~W~~~g~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      ..+.+.+|+.+.|.|.++++|+|+ +.|.+++..+...........      -.+.|.+..+..+|+|.|+|.|.|....
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            456789999999999999999996 999999887654332111111      1257999999999999999999999998


Q ss_pred             EEEEEEEEEe
Q psy11701        206 VYKDVYVNVL  215 (745)
Q Consensus       206 ~~~~~~l~v~  215 (745)
                      ....+.|.|.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            8888877764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.79  E-value=1.6e-08  Score=79.40  Aligned_cols=67  Identities=16%  Similarity=0.204  Sum_probs=51.5

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      ....|.+|++|+|+|... .+...+.|+|+|...... +.........|.|.+++.+|+|.|+|.+.+.
T Consensus         9 p~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           9 PSSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            356789999999999986 566689999998864421 1111233457999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.79  E-value=2.2e-08  Score=77.97  Aligned_cols=70  Identities=21%  Similarity=0.355  Sum_probs=51.2

Q ss_pred             EeeCCCeEEEEEEEeecCCCeEEEEeCCEec-cC----------CCCCCcee-------ecCceEEEccCCCCCCEEEEE
Q psy11701        136 NAAEEETVTFECKASGLPEPEIHWVHNGKPI-SQ----------APPNPRRK-------VGPNRITIENLRKSDTGNYGC  197 (745)
Q Consensus       136 ~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~-~~----------~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C  197 (745)
                      .+.+|++++|.|.+.+.+.+.+.|+++++.. ..          .....++.       .+...|+|.+++.+|+|.|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            4678999999999998888999999876332 11          11111111       123469999999999999999


Q ss_pred             EEEeCCce
Q psy11701        198 NATNSLGY  205 (745)
Q Consensus       198 ~~~~~~g~  205 (745)
                      .+.|..+.
T Consensus        83 ~v~~~~~~   90 (94)
T cd07690          83 EVEDKKEE   90 (94)
T ss_pred             EECCccce
Confidence            99887653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA03376 BARF1; Provisional

Probab=98.77  E-value=1.6e-07  Score=79.27  Aligned_cols=122  Identities=20%  Similarity=0.323  Sum_probs=78.0

Q ss_pred             ceeEecCCcEEEEEEEeec---CCCeeEEEECC----Eec-------------CCCCCeEe--ccCCcEEEEccCCCCCC
Q psy11701         42 KEVALRNKKVELFCIFGGT---PLPQTIWSKDG----VPI-------------NPSDRISQ--GNYGKSLIIKHVEFSDQ   99 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~---p~~~v~W~~~~----~~i-------------~~~~~~~~--~~~~~~L~i~~~~~~d~   99 (745)
                      .+.+..|++++|.|.....   +...|.|+|++    +.+             ....++.+  +.++-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            3457889999999998522   33379999953    111             01122333  12334899999999999


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCE
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK  164 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~  164 (745)
                      |.|+|.+.....+.. +.-.|.+..|-.+.+.........-+...+.|.+.|+|.|.+.|.-+..
T Consensus       100 GtY~C~fQkge~~~~-k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        100 GNYLCRMKLGETEVT-KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             ceEEEEEEcCCCcee-eeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            999999987543333 3334444444333333322222235677899998889999999997643

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.77  E-value=2.5e-08  Score=74.14  Aligned_cols=63  Identities=17%  Similarity=0.259  Sum_probs=47.5

Q ss_pred             cEEEEEEE-eecCCCeeEEEECCEecCCCCCeEec----cCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         50 KVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQG----NYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        50 ~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      .+.|+|.. .|+|+++++||||+++|.........    ...++|.|.....+|.+.|+|+|.|..+.
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            37899999 66799999999999999743211110    11236999888889999999999997654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.76  E-value=5.4e-08  Score=77.46  Aligned_cols=81  Identities=19%  Similarity=0.316  Sum_probs=55.8

Q ss_pred             CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEecc---CC--CCCCceee-----cCceEEEccCCCCCCEEEEEEEEe
Q psy11701        132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS---QA--PPNPRRKV-----GPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~---~~--~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      +....+.+|++++|.|.+.+.+.+.+.|++.+..+.   ..  ....++..     ....|.|.+++.+|+|.|+|.+..
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            455678999999999999887888999986332210   00  01123322     235799999999999999999987


Q ss_pred             CCceEEEEEEEE
Q psy11701        202 SLGYVYKDVYVN  213 (745)
Q Consensus       202 ~~g~~~~~~~l~  213 (745)
                      ... ....+.|.
T Consensus        84 ~~~-~~~~~~~~   94 (95)
T cd05717          84 MPV-QTAKATVT   94 (95)
T ss_pred             CCC-ceEEEEEE
Confidence            643 34444444

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.76  E-value=4.1e-08  Score=76.22  Aligned_cols=73  Identities=14%  Similarity=0.209  Sum_probs=54.1

Q ss_pred             eEeeCCCeEEEEEEE-ee----cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        135 INAAEEETVTFECKA-SG----LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       135 ~~v~~G~~~~l~C~~-~~----~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      +.+.+|.+..|.|.- .+    .+.+.++||||+.++...........+.+.|.|.++..+|+|.|+|.+.+..+...
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            346789999999973 32    36679999999999874322211112456899999999999999999999866543

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.75  E-value=2.2e-08  Score=77.33  Aligned_cols=71  Identities=15%  Similarity=0.268  Sum_probs=57.7

Q ss_pred             CceeEeeCCCeEEEEEE-EeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCE-EEEEEEEeCCc
Q psy11701        132 PEFINAAEEETVTFECK-ASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTG-NYGCNATNSLG  204 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~-~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G-~Y~C~~~~~~g  204 (745)
                      .....+.+|+.+.|.|. ..|.|.+.|.|++++.....  ...+... .++.|.|.+|+.+|+| .|.|.|.|...
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~--~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT--QDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc--ccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            46678999999999998 58999999999987655332  2344444 5699999999999999 79999998753

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.75  E-value=6.6e-08  Score=73.13  Aligned_cols=64  Identities=20%  Similarity=0.409  Sum_probs=53.7

Q ss_pred             ceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEE
Q psy11701        133 EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      ...++.+|+++.|.|...+ +.+.+.|+++|..+..   +.+.......|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~---~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNA---QFSYRVGTDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCC---CcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence            3467889999999999987 4669999999999863   24556666778899999999999999987

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>KOG4802|consensus

Probab=98.72  E-value=2.1e-07  Score=88.10  Aligned_cols=187  Identities=15%  Similarity=0.146  Sum_probs=113.0

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEE----EEEeccCCCCceeEEEEccCceeEEEecccccCcceeE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKV----QTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA  478 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~  478 (745)
                      .+|++.........+++.+.|..........-...+..    .......+...|..+.. ......+..+++.|+.-|+|
T Consensus       146 l~Pr~k~~y~r~~~g~~av~w~~~~~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~-t~~e~~~~~t~~rPgRwyef  224 (516)
T KOG4802|consen  146 LPPRPKILYFRRSRGSHAVDWKIESSLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEK-TMEENTYIFTDMRPGRWYEF  224 (516)
T ss_pred             CCCcchhhhhhhccCceeeeeeeccccceeeeehhhhhhhcccccccccccccceeeee-cCCCceeeeeecCcceeEEE
Confidence            34444333222556678888987422110000000000    01122334455555555 55666888999999999999


Q ss_pred             EEEEecCCCC---CCCCcceEEeCCCCCCCCCCceeEEEcCCc---eEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCc
Q psy11701        479 RVLAFNGAYN---GPPSEIISFVTPEGVPGTVQSLEAIPLGSS---AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPL  552 (745)
Q Consensus       479 ~V~a~n~~G~---g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~---~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~  552 (745)
                      +|.|+|..|.   +.+|.+....-.+.+|.+|.+++...+..+   ...|.|.|+. .+-+|..|.|.|..........+
T Consensus       225 rvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~-sdlPv~~Yki~Ws~~v~s~k~~m  303 (516)
T KOG4802|consen  225 RVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSK-SDLPVEKYKITWSLYVNSAKASM  303 (516)
T ss_pred             EEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCC-CCCcceeeEEEeehhhhhhhhhc
Confidence            9999998765   566666666666677888888886655322   2446666554 46689999999975442211111


Q ss_pred             ccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701        553 LERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE  593 (745)
Q Consensus       553 ~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~  593 (745)
                      .+..-..-...  .+.|.+|.|+..|-|.|.|....|.+..
T Consensus       304 ~tks~~~k~th--q~si~~L~Pns~Y~VevqAi~y~g~~rL  342 (516)
T KOG4802|consen  304 ITKSSYVKDTH--QFSIKELLPNSSYYVEVQAISYLGSRRL  342 (516)
T ss_pred             ccccceeeccc--hhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence            11100011222  3449999999999999999998887665

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.71  E-value=1.5e-08  Score=73.85  Aligned_cols=59  Identities=31%  Similarity=0.680  Sum_probs=44.1

Q ss_pred             CCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceeecCc----eEEEccCCCCCCEEEEEEE
Q psy11701        140 EETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPN----RITIENLRKSDTGNYGCNA  199 (745)
Q Consensus       140 G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~----~L~i~~v~~~d~G~Y~C~~  199 (745)
                      |++++|.|.+ .+.+...+.|++++..+....... ......    .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTN-RSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEE-EEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeE-eecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            8999999999 667778999999987665221111 111112    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.70  E-value=2.4e-07  Score=71.65  Aligned_cols=83  Identities=18%  Similarity=0.304  Sum_probs=64.8

Q ss_pred             ccceeEecCCcEEEEEEEeecCCCe-eEEEECCEecCCCCC--eEecc-----CCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         40 RKKEVALRNKKVELFCIFGGTPLPQ-TIWSKDGVPINPSDR--ISQGN-----YGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~p~~~-v~W~~~~~~i~~~~~--~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      ...+.|.+|+++.|.|.+..+|+|+ +.|.+++..+.....  +....     ..+.|.+..+..+|.|.|+|.|.|...
T Consensus        10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            3567799999999999999999997 999999887654322  32222     225799999999999999999999876


Q ss_pred             eeEEEEEEEEEE
Q psy11701        112 EAKSYSIDLSVL  123 (745)
Q Consensus       112 ~~~~~~~~l~V~  123 (745)
                      ... .++.|.|.
T Consensus        90 ~~s-~tF~l~v~  100 (101)
T cd05860          90 SAS-VTFNVYVN  100 (101)
T ss_pred             eEE-EEEEEEEe
Confidence            655 55666653

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>TIGR00864 PCC polycystin cation channel protein

Probab=98.70  E-value=0.0027  Score=77.06  Aligned_cols=324  Identities=14%  Similarity=0.116  Sum_probs=192.7

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCE-ecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEE--EeCCeeeEE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGV-PINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEV--SNGVGEAKS  115 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~-~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~--~~~~g~~~~  115 (745)
                      ..+...+..|++|+|.-...+....+++|...+. ......        .++.   -+-...|.|...+  .|..|... 
T Consensus      1703 ~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~--------p~~t---Htf~~~G~y~VtVta~N~vss~~- 1770 (2740)
T TIGR00864      1703 QASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSE--------PFMS---HSFPSAGLHLVTMKAFNELGSAN- 1770 (2740)
T ss_pred             eccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCC--------CceE---EEccCCceEEEEEEEEccccccc-
Confidence            3345556779999998777666777999987542 111011        1111   1235579997765  46677665 


Q ss_pred             EEEEEEEEecCe-EEec---Ccee-EeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCC
Q psy11701        116 YSIDLSVLAAPY-FTVE---PEFI-NAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS  190 (745)
Q Consensus       116 ~~~~l~V~~~p~-~~~~---~~~~-~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~  190 (745)
                      .++.|.|..+.. +...   +... .+..|..+.|.-.+.......+.|.+++..-..         + ...   ..+..
T Consensus      1771 ~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~---------g-k~v---~~Tf~ 1837 (2740)
T TIGR00864      1771 ASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM---------G-KHA---CMTFP 1837 (2740)
T ss_pred             eeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc---------c-cee---EEecC
Confidence            567777776553 2221   1121 466788888888765445558889887542110         0 111   14667


Q ss_pred             CCEEEEEEE--EeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEee
Q psy11701        191 DTGNYGCNA--TNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE  268 (745)
Q Consensus       191 d~G~Y~C~~--~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~  268 (745)
                      ++|.|+..+  .|..+....+..+.|+...-.+.+......+..|+.++|.+.....+...+.|..++.....     ..
T Consensus      1838 ~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~-----~t 1912 (2740)
T TIGR00864      1838 DAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEV-----LQ 1912 (2740)
T ss_pred             CCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCcee-----ec
Confidence            899998875  47777777777777876444555666666778899999999987777788999886532110     00


Q ss_pred             cCcEEEcccCCCCCEEEE--EEEEeCCceEEEEEEEEEeecceeecCCC--cEEEecCCeEEEEEEEEecCCCCcEEEEe
Q psy11701        269 TGDLKITDVAFADSGEYT--CFARNKLGTAQGSGSLTVKEHTHITDQPE--DYEVEAGQSATFRCNAVSDPSLKLSIVWL  344 (745)
Q Consensus       269 ~~~l~i~~~~~~d~G~Y~--C~~~n~~g~~~~~~~l~v~~~p~~~~~p~--~~~~~~g~~~~l~C~~~~~~~~~~~i~W~  344 (745)
                      .+....  -.....|.|.  ..+.|..+.......+.|.++..-...+.  ...+..|+..++.-.+....+  +.+.|+
T Consensus      1913 ~~~t~~--HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~--V~f~W~ 1988 (2740)
T TIGR00864      1913 PGPRFS--HSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKP--VAFAWT 1988 (2740)
T ss_pred             CCCeEE--eecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCc--eEEEEE
Confidence            111111  1223455564  56678888887777788876632221111  112567888999888876554  789998


Q ss_pred             eCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEE--EEEEEEeCCceEEEEEEEEEeccC
Q psy11701        345 RGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQ--YTCRAQTELDFIEAQATLTVQVPL  402 (745)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~--y~c~a~n~~g~~~~~~~l~v~~pp  402 (745)
                      .....+..  ...+ ......++...   ...|.  .+..|.|.+|.......+.|+.+.
T Consensus      1989 f~~~~~~g--~~~~-~~~G~~vty~~---~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i 2042 (2740)
T TIGR00864      1989 FDLHHLHG--DSLV-IHMGKDVSYTA---EAAGLLEIQLGAFNALGAENITLQLEAQDAL 2042 (2740)
T ss_pred             eeecccCC--Ccce-eecCCceEEcc---CCCcEEEEEEEEEcccCcccccEEEEEEehe
Confidence            65333321  1111 11111222221   23454  456788998887777777776553

Note: this model has been restricted to the amino half because for technical reasons.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.68  E-value=1.5e-07  Score=74.98  Aligned_cols=83  Identities=20%  Similarity=0.156  Sum_probs=56.4

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEECCE-----ecC--------------CCCCeEeccCCcEEEEccCCCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGV-----PIN--------------PSDRISQGNYGKSLIIKHVEFSD   98 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~-----~i~--------------~~~~~~~~~~~~~L~i~~~~~~d   98 (745)
                      +++....+.+|++++|.|.........+.|+|...     .|.              -.+|..+.. +++|.|.+++.+|
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-ngSL~I~~v~~~D   81 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-NGSLLIQNVTQKD   81 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-CCcEEEecCCccc
Confidence            44555668899999999976533444899999522     110              023333333 4589999999999


Q ss_pred             CEEEEEEEEeCCeeeEEEEEEEE
Q psy11701         99 QGSYTCEVSNGVGEAKSYSIDLS  121 (745)
Q Consensus        99 ~G~Y~C~~~~~~g~~~~~~~~l~  121 (745)
                      +|.|+|.+.+.........+.|.
T Consensus        82 ~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          82 TGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             CEEEEEEEEeCCccEEEEEEEEE
Confidence            99999999987644443445544

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.68  E-value=1.1e-07  Score=73.73  Aligned_cols=70  Identities=20%  Similarity=0.292  Sum_probs=52.1

Q ss_pred             ceeEecCCcEEEEEEEe-----------ecCCCeeEEEECCEecCCCCC-----eEeccCCcEEEEccCCCCCCEEEEEE
Q psy11701         42 KEVALRNKKVELFCIFG-----------GTPLPQTIWSKDGVPINPSDR-----ISQGNYGKSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~-----------g~p~~~v~W~~~~~~i~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (745)
                      ...+.+|+++.|.|..-           ..+...++|+|++..+.....     ..+...+..|.|.++..+|+|.|+|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            45688999999999961           112337999999765554331     23335567899999999999999999


Q ss_pred             EEeCCe
Q psy11701        106 VSNGVG  111 (745)
Q Consensus       106 ~~~~~g  111 (745)
                      +.|...
T Consensus        89 ~rN~t~   94 (104)
T cd05896          89 LRNSTY   94 (104)
T ss_pred             ECCCCc
Confidence            988654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PHA03376 BARF1; Provisional

Probab=98.67  E-value=3.6e-07  Score=77.29  Aligned_cols=123  Identities=21%  Similarity=0.268  Sum_probs=75.9

Q ss_pred             eeEeeCCCeEEEEEEEee---cCCCeEEEEeCCE----ec--------c--CCCCCCceee----cCceEEEccCCCCCC
Q psy11701        134 FINAAEEETVTFECKASG---LPEPEIHWVHNGK----PI--------S--QAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~---~p~~~v~W~~~g~----~~--------~--~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      .+....|+++.|+|....   .+...|.|+|.+.    .+        .  .-.+..+...    ++-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            445678999999998762   2445899999421    11        0  0111222222    445899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCE
Q psy11701        193 GNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQK  257 (745)
Q Consensus       193 G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~  257 (745)
                      |.|+|.+..........-.+.++. |-.+...........-+..++.|.+.++|.|.++|..+..
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~-~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeee-cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            999999997655444433333332 1111111111111124567899998889999999998654

>smart00409 IG Immunoglobulin

Probab=98.67  E-value=2.3e-07  Score=72.55  Aligned_cols=81  Identities=32%  Similarity=0.564  Sum_probs=61.5

Q ss_pred             ceeEeeCCCeEEEEEEEeecCCCeEEEEeC-CEeccCCCCCCceeec--CceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        133 EFINAAEEETVTFECKASGLPEPEIHWVHN-GKPISQAPPNPRRKVG--PNRITIENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~-g~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      ....+..|+++.|.|.+.+.+.+.+.|+++ +..+...... .....  ...|.|.++...|+|.|.|.+.+..+.....
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRF-SVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcE-EEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            445678999999999998877889999998 7777521111 11112  3689999999999999999999887776666


Q ss_pred             EEEEE
Q psy11701        210 VYVNV  214 (745)
Q Consensus       210 ~~l~v  214 (745)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00409       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            66554

>smart00410 IG_like Immunoglobulin like

Probab=98.67  E-value=2.3e-07  Score=72.55  Aligned_cols=81  Identities=32%  Similarity=0.564  Sum_probs=61.5

Q ss_pred             ceeEeeCCCeEEEEEEEeecCCCeEEEEeC-CEeccCCCCCCceeec--CceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        133 EFINAAEEETVTFECKASGLPEPEIHWVHN-GKPISQAPPNPRRKVG--PNRITIENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~-g~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      ....+..|+++.|.|.+.+.+.+.+.|+++ +..+...... .....  ...|.|.++...|+|.|.|.+.+..+.....
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRF-SVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcE-EEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            445678999999999998877889999998 7777521111 11112  3689999999999999999999887776666


Q ss_pred             EEEEE
Q psy11701        210 VYVNV  214 (745)
Q Consensus       210 ~~l~v  214 (745)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00410       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            66554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.65  E-value=1.4e-07  Score=74.87  Aligned_cols=74  Identities=23%  Similarity=0.210  Sum_probs=54.9

Q ss_pred             CCcEEEEEEEeecCCCeeEEEECCEecCC------------------CCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSKDGVPINP------------------SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~~~~~i~~------------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      |++|+|.|.........|.|+++......                  ..|+.+... .+|.|.+++.+|+|.|+|.+...
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEcC
Confidence            89999999987655558999996533210                  133444443 68999999999999999999987


Q ss_pred             CeeeEEEEEEEEE
Q psy11701        110 VGEAKSYSIDLSV  122 (745)
Q Consensus       110 ~g~~~~~~~~l~V  122 (745)
                      .+......+.|.|
T Consensus        80 ~~~~~~~~~~l~v   92 (92)
T cd05741          80 NGVTENAKFFLRV   92 (92)
T ss_pred             CCcEEEEEEEEEC
Confidence            7766666666653

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.61  E-value=2.3e-07  Score=71.43  Aligned_cols=73  Identities=25%  Similarity=0.413  Sum_probs=50.3

Q ss_pred             cEEEEEEEee-cCCCeeEEEECCEecCCCCCe-EeccCC------cEEEEccCCCCCCEEEEEEEEeCC-eeeEEEEEEE
Q psy11701         50 KVELFCIFGG-TPLPQTIWSKDGVPINPSDRI-SQGNYG------KSLIIKHVEFSDQGSYTCEVSNGV-GEAKSYSIDL  120 (745)
Q Consensus        50 ~~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~-~~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~-g~~~~~~~~l  120 (745)
                      .+.|+|.+.| .|.+.|+|+|+|++|...... .....+      +.|.|.....+|.|.|+|.|.+.. ......++.|
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            3689999987 588899999999998643221 111111      368888888888899999998753 2333455555


Q ss_pred             EE
Q psy11701        121 SV  122 (745)
Q Consensus       121 ~V  122 (745)
                      .|
T Consensus        81 ~v   82 (82)
T cd05759          81 DV   82 (82)
T ss_pred             cC
Confidence            43

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.59  E-value=5e-07  Score=73.70  Aligned_cols=74  Identities=24%  Similarity=0.445  Sum_probs=53.4

Q ss_pred             eeccceeEecCCcEEEEEEEeec----CCCeeEEE---------------ECCEecCC-----CCCeEec----cCCcEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT----PLPQTIWS---------------KDGVPINP-----SDRISQG----NYGKSL   89 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~----p~~~v~W~---------------~~~~~i~~-----~~~~~~~----~~~~~L   89 (745)
                      ..+..+.+..|++++|.|.....    +..+|+|.               ++|.....     .+|+.+.    ..+.+|
T Consensus         3 ~~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI   82 (116)
T cd05879           3 YTDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSI   82 (116)
T ss_pred             EccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEE
Confidence            45677889999999999999653    34589993               23443321     1355442    234589


Q ss_pred             EEccCCCCCCEEEEEEEEeCCe
Q psy11701         90 IIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      .|.+++.+|.|.|+|.+.+..+
T Consensus        83 ~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          83 VIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             EEccCCcccCEEEEEEEEcCCC
Confidence            9999999999999999997543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.56  E-value=1.7e-07  Score=74.46  Aligned_cols=78  Identities=22%  Similarity=0.321  Sum_probs=58.5

Q ss_pred             ecCCcEEEEEEEee-cCCCeeEEEECCEecC--C---------------CCCeEeccCCcEEEEccCCCCCCEEEEEEEE
Q psy11701         46 LRNKKVELFCIFGG-TPLPQTIWSKDGVPIN--P---------------SDRISQGNYGKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        46 ~~G~~~~l~C~~~g-~p~~~v~W~~~~~~i~--~---------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      ..|++|+|.|.... .....+.|+|....+-  .               .+|+.++..+.+|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999998753 3344799998542211  0               1245555556789999999999999999999


Q ss_pred             eCCeeeEEEEEEEEEE
Q psy11701        108 NGVGEAKSYSIDLSVL  123 (745)
Q Consensus       108 ~~~g~~~~~~~~l~V~  123 (745)
                      ...|......+.|.|+
T Consensus        82 ~~~~~~~~~~f~L~vy   97 (97)
T cd05775          82 TKNGVTITKEFTLHIY   97 (97)
T ss_pred             cCCCCeEEEEEEEEeC
Confidence            8878887788888773

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.56  E-value=6.1e-07  Score=71.30  Aligned_cols=87  Identities=24%  Similarity=0.486  Sum_probs=65.8

Q ss_pred             CCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      |.+|.++.+......++.|.|.++....+.+.+|.|.|.......+....     ........+.+.+|.|++.|.|+|.
T Consensus         1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~p~~~Y~~~v~   75 (93)
T cd00063           1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVE-----VTPGSETSYTLTGLKPGTEYEFRVR   75 (93)
T ss_pred             CcCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEee-----ccCCcccEEEEccccCCCEEEEEEE
Confidence            34566788877788999999999876546788999999876522222211     1013668899999999999999999


Q ss_pred             EEecCCCCCCcc
Q psy11701        584 GYTKAGDGAESK  595 (745)
Q Consensus       584 a~n~~G~g~~S~  595 (745)
                      |.+..|.|.++.
T Consensus        76 a~~~~~~~~~s~   87 (93)
T cd00063          76 AVNGGGESPPSE   87 (93)
T ss_pred             EECCCccCCCcc
Confidence            999988887754

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.54  E-value=6.1e-07  Score=71.60  Aligned_cols=75  Identities=19%  Similarity=0.155  Sum_probs=52.7

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCE-----ec----cC-------CCCCCceee-cCceEEEccCCCCCC
Q psy11701        130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK-----PI----SQ-------APPNPRRKV-GPNRITIENLRKSDT  192 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~-----~~----~~-------~~~~~~~~~-~~~~L~i~~v~~~d~  192 (745)
                      +.+.+..+.+|+++.|.|.........+.|+|+..     .+    ..       .....+... .+++|.|.+++.+|+
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~   82 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT   82 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence            44555678899999999976544445999999632     11    10       011223222 468999999999999


Q ss_pred             EEEEEEEEeCCc
Q psy11701        193 GNYGCNATNSLG  204 (745)
Q Consensus       193 G~Y~C~~~~~~g  204 (745)
                      |.|+|.+.+...
T Consensus        83 G~Y~~~v~~~~~   94 (105)
T cd05774          83 GFYTLQTITTNF   94 (105)
T ss_pred             EEEEEEEEeCCc
Confidence            999999998763

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.50  E-value=5.9e-07  Score=73.85  Aligned_cols=73  Identities=21%  Similarity=0.317  Sum_probs=54.5

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEECCE---ec-----------CCCCCeEecc----CCcEEEEccCCCCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGV---PI-----------NPSDRISQGN----YGKSLIIKHVEFSDQ   99 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~---~i-----------~~~~~~~~~~----~~~~L~i~~~~~~d~   99 (745)
                      ..|..+.+.+|++|+|.|.+.+.+...+.|+|...   +.           ....|+.+..    ...+|.|.+++.+|+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS   82 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence            45667889999999999999877777999998431   10           1234554422    334899999999999


Q ss_pred             EEEEEEEEeCC
Q psy11701        100 GSYTCEVSNGV  110 (745)
Q Consensus       100 G~Y~C~~~~~~  110 (745)
                      |.|.|.+.+..
T Consensus        83 G~Y~C~~~~~~   93 (109)
T cd04983          83 AVYFCALSESG   93 (109)
T ss_pred             EEEEEEEecCC
Confidence            99999998643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.50  E-value=3.7e-07  Score=71.63  Aligned_cols=74  Identities=18%  Similarity=0.363  Sum_probs=55.7

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .|.+...|. ..|.+|++++|+|... .+...+.|+|+|.......  .........|.|.+++.+|+|.|+|...+.
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            356666665 3678999999999886 4677899999988654211  111223457999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.48  E-value=1.3e-07  Score=71.66  Aligned_cols=69  Identities=33%  Similarity=0.481  Sum_probs=45.8

Q ss_pred             eeccceeEecCCcEEEEEEEeecC-CCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTP-LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p-~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      ..+.......+. ++|.|.+.+.+ .+++.|+ +................+.|.|.++..+|.|.|+|.|.|
T Consensus         6 ~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    6 VPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            334444343344 99999998776 7799999 111111111122223456899999999999999999975

...

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.46  E-value=1.7e-06  Score=70.03  Aligned_cols=76  Identities=25%  Similarity=0.422  Sum_probs=52.7

Q ss_pred             cCCcEEEEEEEeecC------------CCeeEEEEC--CEe---cC----------C-CCCeEecc-----CCcEEEEcc
Q psy11701         47 RNKKVELFCIFGGTP------------LPQTIWSKD--GVP---IN----------P-SDRISQGN-----YGKSLIIKH   93 (745)
Q Consensus        47 ~G~~~~l~C~~~g~p------------~~~v~W~~~--~~~---i~----------~-~~~~~~~~-----~~~~L~i~~   93 (745)
                      .|++|+|.|......            .+.|.|+|-  ++.   +.          . .+|+++..     .+.+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999996432            358999983  211   10          0 13555532     456999999


Q ss_pred             CCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701         94 VEFSDQGSYTCEVSNGVGEAKSYSIDLSVL  123 (745)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~  123 (745)
                      ++.+|+|.|+|.+.+...... ..+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~-~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNY-DTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCce-eEEEEEEE
Confidence            999999999999986544433 55666665

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.46  E-value=8.1e-07  Score=68.36  Aligned_cols=62  Identities=21%  Similarity=0.416  Sum_probs=45.7

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCEeccCCCCCCce------eecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        143 VTFECKASG-LPEPEIHWVHNGKPISQAPPNPRR------KVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +.|.|.+.| .|.+.++|+++|+.+.........      ....+.|.|.....+|.|.|+|.|.|...
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l   70 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL   70 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence            689999987 688899999999988643221111      11124688888888899999999998753

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.45  E-value=1e-06  Score=71.74  Aligned_cols=72  Identities=15%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             EeeccceeEecCCcEEEEEEEeecC-CCeeEEEECC--Ee---cC---------CCCCeEeccC--CcEEEEccCCCCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTP-LPQTIWSKDG--VP---IN---------PSDRISQGNY--GKSLIIKHVEFSDQ   99 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p-~~~v~W~~~~--~~---i~---------~~~~~~~~~~--~~~L~i~~~~~~d~   99 (745)
                      ...|..+.+.+|++|+|.|.+.+.. ...+.|+|..  +.   |.         ...++.....  ...|.|.+++.+|+
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            4556778899999999999997654 5579999832  11   10         0134443222  23699999999999


Q ss_pred             EEEEEEEEe
Q psy11701        100 GSYTCEVSN  108 (745)
Q Consensus       100 G~Y~C~~~~  108 (745)
                      |.|.|.+.+
T Consensus        84 g~Y~Ca~~~   92 (106)
T cd04980          84 AVYYCQQYG   92 (106)
T ss_pred             EEEEEEEeC
Confidence            999999964

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.43  E-value=1.7e-06  Score=67.31  Aligned_cols=69  Identities=19%  Similarity=0.359  Sum_probs=50.3

Q ss_pred             ceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEecc-----CCCCCCceee-----cCceEEEccCCCCCCEEEEEEEEe
Q psy11701        133 EFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS-----QAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~-----~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      .+.++.+|++++|+|.+.+.....+.|++-+..+.     ....+.++..     ...+|.|.+++.+|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            45678999999999999887677788987664331     0002223331     223699999999999999999975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.43  E-value=2.2e-06  Score=69.84  Aligned_cols=77  Identities=25%  Similarity=0.448  Sum_probs=53.7

Q ss_pred             cCCcEEEEEEEeecC------CCeeEEEECCE---e-----cC----------CCCCeEecc---CCcEEEEccCCCCCC
Q psy11701         47 RNKKVELFCIFGGTP------LPQTIWSKDGV---P-----IN----------PSDRISQGN---YGKSLIIKHVEFSDQ   99 (745)
Q Consensus        47 ~G~~~~l~C~~~g~p------~~~v~W~~~~~---~-----i~----------~~~~~~~~~---~~~~L~i~~~~~~d~   99 (745)
                      .|++|+|.|.....|      ...|.|+|...   +     +.          -..|+.+..   ...+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999986553      34799998531   0     10          013444421   234899999999999


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEEEe
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSVLA  124 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V~~  124 (745)
                      |.|+|.+.+..+... ..+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~-~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDES-VVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceE-EEEEEEEEE
Confidence            999999988766554 667777753

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.42  E-value=1.7e-06  Score=71.12  Aligned_cols=74  Identities=27%  Similarity=0.488  Sum_probs=51.0

Q ss_pred             eeccceeEecCCcEEEEEEEeecC----CCeeEEEEC----CEe--c---C------CC----CCeEec----cCCcEEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTP----LPQTIWSKD----GVP--I---N------PS----DRISQG----NYGKSLI   90 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p----~~~v~W~~~----~~~--i---~------~~----~~~~~~----~~~~~L~   90 (745)
                      ..|+.+.+.+|++++|.|.....+    ...|.|++.    +.+  +   .      ..    +|+.+.    ....+|+
T Consensus         3 ~~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~   82 (115)
T cd05880           3 YTSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASIL   82 (115)
T ss_pred             ecCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEE
Confidence            457788999999999999986433    236999751    111  1   0      01    223222    2345799


Q ss_pred             EccCCCCCCEEEEEEEEeCCe
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      |.+++.+|+|.|+|.+.+..+
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          83 IWQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             EeeCChhhCEEEEEEEEeCCC
Confidence            999999999999999987543

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.41  E-value=1.2e-06  Score=71.95  Aligned_cols=71  Identities=27%  Similarity=0.385  Sum_probs=52.6

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEECC--EecC----------------CCCCeEecc---CCcEEEEccCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VPIN----------------PSDRISQGN---YGKSLIIKHVEF   96 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~i~----------------~~~~~~~~~---~~~~L~i~~~~~   96 (745)
                      ..|....+.+|++++|.|...+ +...+.|||..  +.+.                ...++....   ....|.|.+++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            4567788999999999999987 66789999843  1110                023444322   235899999999


Q ss_pred             CCCEEEEEEEEeC
Q psy11701         97 SDQGSYTCEVSNG  109 (745)
Q Consensus        97 ~d~G~Y~C~~~~~  109 (745)
                      +|+|.|.|.+.+.
T Consensus        82 ~Dsg~Y~Ca~~~~   94 (110)
T cd05899          82 EDSAVYLCASSLG   94 (110)
T ss_pred             hhCEEEEEEeeCC
Confidence            9999999999764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.40  E-value=3.4e-06  Score=68.26  Aligned_cols=77  Identities=22%  Similarity=0.384  Sum_probs=52.8

Q ss_pred             CCCeEEEEEEEeecC------------CCeEEEEeC--CEe---cc--------CCCCCCceee-------cCceEEEcc
Q psy11701        139 EEETVTFECKASGLP------------EPEIHWVHN--GKP---IS--------QAPPNPRRKV-------GPNRITIEN  186 (745)
Q Consensus       139 ~G~~~~l~C~~~~~p------------~~~v~W~~~--g~~---~~--------~~~~~~~~~~-------~~~~L~i~~  186 (745)
                      .|++++|.|......            .+.|.|+|.  |+.   +.        ......|...       ++.+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999986422            358999984  211   10        1112123332       467899999


Q ss_pred             CCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        187 LRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      ++.+|+|.|+|.+.+........+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999776666666666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.40  E-value=2.9e-07  Score=69.78  Aligned_cols=74  Identities=31%  Similarity=0.592  Sum_probs=50.0

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecC-CCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEe
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLP-EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      +|.+...+.......+. +.|.|.+.+.+ .+.+.|+ +...... ..........+.|.|.++..+|.|.|+|.|+|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~-~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN-SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE-EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee-eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            36666666655444444 99999998866 7799999 1111110 00111223457899999999999999999986

...

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.36  E-value=4.2e-06  Score=68.18  Aligned_cols=78  Identities=23%  Similarity=0.402  Sum_probs=54.5

Q ss_pred             CCCeEEEEEEEeecC------CCeEEEEeCC-----E-ecc---C------CCCCCcee-----ecCceEEEccCCCCCC
Q psy11701        139 EEETVTFECKASGLP------EPEIHWVHNG-----K-PIS---Q------APPNPRRK-----VGPNRITIENLRKSDT  192 (745)
Q Consensus       139 ~G~~~~l~C~~~~~p------~~~v~W~~~g-----~-~~~---~------~~~~~~~~-----~~~~~L~i~~v~~~d~  192 (745)
                      .|++++|.|.....+      ...+.|+|..     . .+.   .      .....+..     .++.+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987643      4599999962     1 110   0      00111111     1456899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEee
Q psy11701        193 GNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       193 G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998877777777777753

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.35  E-value=4.4e-06  Score=68.01  Aligned_cols=77  Identities=27%  Similarity=0.483  Sum_probs=53.0

Q ss_pred             cCCcEEEEEEEeecC------CCeeEEEECC-----E-ec--CCC----------CCeEe---ccCCcEEEEccCCCCCC
Q psy11701         47 RNKKVELFCIFGGTP------LPQTIWSKDG-----V-PI--NPS----------DRISQ---GNYGKSLIIKHVEFSDQ   99 (745)
Q Consensus        47 ~G~~~~l~C~~~g~p------~~~v~W~~~~-----~-~i--~~~----------~~~~~---~~~~~~L~i~~~~~~d~   99 (745)
                      .|++|+|.|.....+      ...|.|+|..     . .+  ..+          .++.+   .....+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999986543      4589999862     1 11  011          11222   12345899999999999


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEEEe
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSVLA  124 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V~~  124 (745)
                      |.|+|.+.+..+... ..+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~-~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQ-DTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceE-EEEEEEEEE
Confidence            999999998755433 667787754

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.35  E-value=1.3e-06  Score=68.79  Aligned_cols=70  Identities=20%  Similarity=0.239  Sum_probs=49.3

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCC--CeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      ..+....|.+|++|+|.|.... ....+.|+|+|.......  ..........+.|.+++.+|+|.|+|....
T Consensus         5 ~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           5 SAHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             EecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            3445667899999999998864 445899999886533110  000011233789999999999999999853

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.34  E-value=5.1e-06  Score=67.82  Aligned_cols=74  Identities=22%  Similarity=0.373  Sum_probs=51.4

Q ss_pred             CceeEeeCCCeEEEEEEEeec----CCCeEEEEe---------------CCEecc--CCCCCCcee------ecCceEEE
Q psy11701        132 PEFINAAEEETVTFECKASGL----PEPEIHWVH---------------NGKPIS--QAPPNPRRK------VGPNRITI  184 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~----p~~~v~W~~---------------~g~~~~--~~~~~~~~~------~~~~~L~i  184 (745)
                      +....+..|+++.|.|.....    +...+.|.+               +|....  ......|..      .++.+|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            556678899999999999653    235899933               333322  111122332      24568999


Q ss_pred             ccCCCCCCEEEEEEEEeCCce
Q psy11701        185 ENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      .+++.+|.|.|+|.+.|..+.
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCc
Confidence            999999999999999987653

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.33  E-value=6.1e-06  Score=67.19  Aligned_cols=78  Identities=24%  Similarity=0.410  Sum_probs=54.1

Q ss_pred             CCCeEEEEEEEeecC----------CCeEEEEeC--CEec-----------cCCCCCCceee-------cCceEEEccCC
Q psy11701        139 EEETVTFECKASGLP----------EPEIHWVHN--GKPI-----------SQAPPNPRRKV-------GPNRITIENLR  188 (745)
Q Consensus       139 ~G~~~~l~C~~~~~p----------~~~v~W~~~--g~~~-----------~~~~~~~~~~~-------~~~~L~i~~v~  188 (745)
                      .|++++|+|.....+          ...+.|+|.  ++..           .......+...       +...|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            489999999996533          257999984  2111           11112223332       34679999999


Q ss_pred             CCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        189 KSDTGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      .+|+|.|.|.+.......+..+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999998766667777777753

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.33  E-value=3.8e-06  Score=67.42  Aligned_cols=73  Identities=29%  Similarity=0.465  Sum_probs=49.1

Q ss_pred             CcEEEEEEEeecC---CCeeEEEECCEe----c-----------CC--CCCeEecc---CCcEEEEccCCCCCCEEEEEE
Q psy11701         49 KKVELFCIFGGTP---LPQTIWSKDGVP----I-----------NP--SDRISQGN---YGKSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        49 ~~~~l~C~~~g~p---~~~v~W~~~~~~----i-----------~~--~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~  105 (745)
                      ++|+|.|.....+   ...|.|+|....    +           ..  ..|+.+..   ...+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5799999996554   337999995421    1           11  12333332   345899999999999999999


Q ss_pred             EEe-CCeeeEEEEEEEEE
Q psy11701        106 VSN-GVGEAKSYSIDLSV  122 (745)
Q Consensus       106 ~~~-~~g~~~~~~~~l~V  122 (745)
                      +.. ..|... ..+.|.|
T Consensus        81 v~~~~~g~~~-~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQ-KVTTLTV   97 (98)
T ss_pred             EEeCCCCcEE-EEEEEEe
Confidence            975 344444 6666666

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.33  E-value=4.8e-06  Score=67.00  Aligned_cols=74  Identities=22%  Similarity=0.280  Sum_probs=49.0

Q ss_pred             CCcEEEEEEEeecC---CCeeEEEECCE--ec---------CC------CCCeEec-----cCCcEEEEccCCCCCCEEE
Q psy11701         48 NKKVELFCIFGGTP---LPQTIWSKDGV--PI---------NP------SDRISQG-----NYGKSLIIKHVEFSDQGSY  102 (745)
Q Consensus        48 G~~~~l~C~~~g~p---~~~v~W~~~~~--~i---------~~------~~~~~~~-----~~~~~L~i~~~~~~d~G~Y  102 (745)
                      |++|+|.|......   ...+.|+|...  .+         ..      ..|+.+.     ....+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            78999999985332   22688887431  11         10      1344432     1235899999999999999


Q ss_pred             EEEEEeCCeeeEEEEEEEEE
Q psy11701        103 TCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus       103 ~C~~~~~~g~~~~~~~~l~V  122 (745)
                      +|.+.+..+. ....+.|.|
T Consensus        81 ~C~v~~~~~~-~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFY-EEATVELKV   99 (100)
T ss_pred             EEEEecCCcE-EEEEEEEEE
Confidence            9999976554 446566665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.33  E-value=2.7e-06  Score=66.45  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=55.3

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEee-cCCCe--eEEEECCEecCCCCCeE----eccCCcEEEEccCCCCCCE-EEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGG-TPLPQ--TIWSKDGVPINPSDRIS----QGNYGKSLIIKHVEFSDQG-SYTC  104 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g-~p~~~--v~W~~~~~~i~~~~~~~----~~~~~~~L~i~~~~~~d~G-~Y~C  104 (745)
                      |..+.+.+....+.+|+.++|+|.+.| .|.++  |.|||+++.|.......    ......+|++ .+..+|.| .|+|
T Consensus         1 p~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~-~~~r~D~g~~~sC   79 (100)
T cd05755           1 PDSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITI-TVDREDHGANFSC   79 (100)
T ss_pred             CceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEE-ecchhhCCcEEEE
Confidence            456677778888999999999999955 57775  79999999996432111    0111235666 46677777 8999


Q ss_pred             EEEeCCe
Q psy11701        105 EVSNGVG  111 (745)
Q Consensus       105 ~~~~~~g  111 (745)
                      +|....+
T Consensus        80 ~A~l~l~   86 (100)
T cd05755          80 ETELDLR   86 (100)
T ss_pred             EEEeccC
Confidence            9987643

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.32  E-value=2e-06  Score=70.19  Aligned_cols=68  Identities=22%  Similarity=0.360  Sum_probs=49.3

Q ss_pred             eEecCCcEEEEEEEeec-CCCeeEEEECCE--e---c------------CCCCCeEecc----CCcEEEEccCCCCCCEE
Q psy11701         44 VALRNKKVELFCIFGGT-PLPQTIWSKDGV--P---I------------NPSDRISQGN----YGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        44 ~v~~G~~~~l~C~~~g~-p~~~v~W~~~~~--~---i------------~~~~~~~~~~----~~~~L~i~~~~~~d~G~  101 (745)
                      .+.+|++++|.|.+.+. +...+.|+|...  .   +            ....|+....    ...+|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            57899999999999866 566899998432  1   1            0123443322    23489999999999999


Q ss_pred             EEEEEEeCCe
Q psy11701        102 YTCEVSNGVG  111 (745)
Q Consensus       102 Y~C~~~~~~g  111 (745)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987553

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.32  E-value=4.3e-06  Score=62.52  Aligned_cols=73  Identities=15%  Similarity=0.294  Sum_probs=50.2

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCEeccCCCCC----CceeecCceEEEccCCCCCCEEEEEEEEeCCce-EEEEEEEEEe
Q psy11701        143 VTFECKASG-LPEPEIHWVHNGKPISQAPPN----PRRKVGPNRITIENLRKSDTGNYGCNATNSLGY-VYKDVYVNVL  215 (745)
Q Consensus       143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~-~~~~~~l~v~  215 (745)
                      +.|.|.+.| .|.+.|+|+++++++......    .......+.|.|..-..+|+..|+|+|.|+.-. ......|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            689999976 788899999999999754221    111223457888777777777899999986532 3333455544

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.31  E-value=4e-06  Score=69.40  Aligned_cols=74  Identities=28%  Similarity=0.499  Sum_probs=50.3

Q ss_pred             eeccceeEecCCcEEEEEEEeecC----CCeeEEEECCE------ec---------C-CC----CCeEecc----CCcEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTP----LPQTIWSKDGV------PI---------N-PS----DRISQGN----YGKSL   89 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p----~~~v~W~~~~~------~i---------~-~~----~~~~~~~----~~~~L   89 (745)
                      ..|..+.+.+|++++|.|......    ...+.|++...      .+         . ..    .|+.+..    ...+|
T Consensus         3 ~~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   82 (116)
T cd05715           3 YTPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASI   82 (116)
T ss_pred             ecCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEE
Confidence            456778899999999999985432    24699986211      11         0 01    2233221    23579


Q ss_pred             EEccCCCCCCEEEEEEEEeCCe
Q psy11701         90 IIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      +|.+++.+|+|.|.|.+.+...
T Consensus        83 ~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          83 VIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             EEeeCCcccCEEEEEEEEeCCC
Confidence            9999999999999999987533

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.31  E-value=7.5e-06  Score=61.23  Aligned_cols=73  Identities=19%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             EEEEEEEee-cCCCeeEEEECCEecCCCCCeEecc-C----CcEEEEccCCCCCCE-EEEEEEEeCCeeeEEEEEEEEEE
Q psy11701         51 VELFCIFGG-TPLPQTIWSKDGVPINPSDRISQGN-Y----GKSLIIKHVEFSDQG-SYTCEVSNGVGEAKSYSIDLSVL  123 (745)
Q Consensus        51 ~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~~~~-~----~~~L~i~~~~~~d~G-~Y~C~~~~~~g~~~~~~~~l~V~  123 (745)
                      +.|.|.+.| .|.+.|+|+|+++++.......... .    .++|.| .++.+|.| .|+|+|.+..-......+.|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~-~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLML-KVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEE-ECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            689999955 5888999999999997543221111 1    136777 55555555 89999988643334566677765


Q ss_pred             e
Q psy11701        124 A  124 (745)
Q Consensus       124 ~  124 (745)
                      .
T Consensus        81 y   81 (82)
T cd05883          81 Y   81 (82)
T ss_pred             E
Confidence            3

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=98.30  E-value=0.00012  Score=69.39  Aligned_cols=161  Identities=14%  Similarity=0.191  Sum_probs=81.7

Q ss_pred             cCceeEEEecccccCcceeEEEEEecCC-CCCCCCcceEEeCCCCCCCCCCcee-----EEEcCC-ce-EEEEeeCCC--
Q psy11701        459 KGESTTTEVDKFVPASKNFARVLAFNGA-YNGPPSEIISFVTPEGVPGTVQSLE-----AIPLGS-SA-FYLKWVKPE--  528 (745)
Q Consensus       459 ~~~~~~~~i~~L~~~~~Y~~~V~a~n~~-G~g~~S~~~~~~t~~~~P~~p~~~~-----~~~~~~-~~-i~l~W~~p~--  528 (745)
                      .+..+.++|.+|.|++.|.|.|.++|.. |.+..-....+.|.+....+|..|+     ...... .. -..+...|.  
T Consensus        11 vg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~   90 (300)
T PF10179_consen   11 VGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRS   90 (300)
T ss_pred             cCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCC
Confidence            4567889999999999999999999873 3332222233444333333343332     222221 12 334566441  


Q ss_pred             CCCCceeeE--------EEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceee-e
Q psy11701        529 QPNGVLMGY--------KIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF-Y  599 (745)
Q Consensus       529 ~~~g~i~~Y--------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~-~  599 (745)
                      .....+.-+        .|+....+.--...       ........+.+.++.|+..|.+++.+.|... +..+..+. .
T Consensus        91 ~~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~-------~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aa  162 (300)
T PF10179_consen   91 STHQSLWLFVQSCSGSVRVEISRNGKILLSQ-------KNVEGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAA  162 (300)
T ss_pred             CCCccEEEEEEeCCCeEEEEEEECCeEEeee-------ecccceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEe
Confidence            111111111        12221111110000       0123456899999999999999998876433 33333333 1


Q ss_pred             cccCCCCCCCCCCC-----------CCcceeEEEeecCc
Q psy11701        600 VPFKNPDNVEGRGS-----------TPNNLVISWTAMPE  627 (745)
Q Consensus       600 ~~~~~~~~~~~~~~-----------~p~~~~v~W~~~~~  627 (745)
                      .+.......+..|.           .-++++|.|.+.+.
T Consensus       163 st~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d  201 (300)
T PF10179_consen  163 STNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPD  201 (300)
T ss_pred             cCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCC
Confidence            11111122222222           22788999975544

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.29  E-value=1.1e-05  Score=59.91  Aligned_cols=76  Identities=18%  Similarity=0.252  Sum_probs=53.3

Q ss_pred             ceeEecCCcEEEEEEEeecC--CCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701         42 KEVALRNKKVELFCIFGGTP--LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID  119 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~  119 (745)
                      +..+..|++++|+|.....+  .+.|+|...+...-    ......+.+|.+..+...|+|.++|.+.....+. ...+.
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~----~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~-~~~~~   82 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK----QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEK-TLKLD   82 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc----eeccCCccEEEeceeCcccCCEEEEEEEECceEE-EEEee
Confidence            44688999999999995544  45999986544322    1112456789999999999999999998653222 24445


Q ss_pred             EEE
Q psy11701        120 LSV  122 (745)
Q Consensus       120 l~V  122 (745)
                      |.|
T Consensus        83 V~V   85 (88)
T cd07694          83 IKV   85 (88)
T ss_pred             EEE
Confidence            544

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.28  E-value=5.9e-06  Score=67.26  Aligned_cols=76  Identities=30%  Similarity=0.490  Sum_probs=52.1

Q ss_pred             CCcEEEEEEEeecC----------CCeeEEEEC--CEec------------CC--CCCeEec-----cCCcEEEEccCCC
Q psy11701         48 NKKVELFCIFGGTP----------LPQTIWSKD--GVPI------------NP--SDRISQG-----NYGKSLIIKHVEF   96 (745)
Q Consensus        48 G~~~~l~C~~~g~p----------~~~v~W~~~--~~~i------------~~--~~~~~~~-----~~~~~L~i~~~~~   96 (745)
                      |++|+|.|.....+          ...|.|+|.  +..+            ..  .+|+.+.     ....+|+|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            89999999996543          247999984  2211            00  1344442     2345899999999


Q ss_pred             CCCEEEEEEEEeCCeeeEEEEEEEEEEe
Q psy11701         97 SDQGSYTCEVSNGVGEAKSYSIDLSVLA  124 (745)
Q Consensus        97 ~d~G~Y~C~~~~~~g~~~~~~~~l~V~~  124 (745)
                      +|+|.|.|.+........ ..+.|.|..
T Consensus        82 sD~G~Y~C~v~~~~~~~~-~~v~l~V~g  108 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQ-DTVPLEVTG  108 (110)
T ss_pred             hhCEEEEEEEEeCCCcce-EEEEEEEEE
Confidence            999999999987543333 567777754

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.27  E-value=5.5e-06  Score=71.11  Aligned_cols=85  Identities=20%  Similarity=0.284  Sum_probs=60.4

Q ss_pred             cceeEecCCcEEEEEEEe-ecCCCeeEEEECCEecC----------C--CCCeEe---ccCCcEEEEccCCCCCCEEEEE
Q psy11701         41 KKEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPIN----------P--SDRISQ---GNYGKSLIIKHVEFSDQGSYTC  104 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~i~----------~--~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C  104 (745)
                      ..++|.+|++|+|.|... +...+.++|+|..+.+.          +  .+|+.+   .....+|+|.+++.+|+|.|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            456789999999999984 55677999999643221          1  134442   2234689999999999999999


Q ss_pred             EEEe-CCeeeEEEEEEEEEEec
Q psy11701        105 EVSN-GVGEAKSYSIDLSVLAA  125 (745)
Q Consensus       105 ~~~~-~~g~~~~~~~~l~V~~~  125 (745)
                      .... ..|...+...-|.|...
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEch
Confidence            9975 34534446667777654

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.26  E-value=1.1e-05  Score=67.07  Aligned_cols=85  Identities=24%  Similarity=0.354  Sum_probs=59.2

Q ss_pred             eeccceeEecCCcEEEEEEEe-ecCCCeeEEEECCE-----ecC----C----------CCCeEecc----CCcEEEEcc
Q psy11701         38 VTRKKEVALRNKKVELFCIFG-GTPLPQTIWSKDGV-----PIN----P----------SDRISQGN----YGKSLIIKH   93 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~-----~i~----~----------~~~~~~~~----~~~~L~i~~   93 (745)
                      ..|..+.+.+|++++|.|... ......+.|++...     .|.    .          ..++.+..    ...+|.|.+
T Consensus         6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~   85 (114)
T PF07686_consen    6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN   85 (114)
T ss_dssp             EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred             EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence            357888999999999999998 44556899998321     111    0          12233222    124799999


Q ss_pred             CCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         94 VEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      ++.+|+|.|.|.+...........+.|.|
T Consensus        86 l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   86 LQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             ESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            99999999999998874444445566654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.23  E-value=3.8e-06  Score=68.92  Aligned_cols=73  Identities=16%  Similarity=0.391  Sum_probs=52.3

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCE--ecc------------C-CCCCCceee-----cCceEEEccCCC
Q psy11701        130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK--PIS------------Q-APPNPRRKV-----GPNRITIENLRK  189 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~--~~~------------~-~~~~~~~~~-----~~~~L~i~~v~~  189 (745)
                      ..|....+.+|++++|.|.+.+ +...+.|||...  .+.            . .....++..     ....|.|.+++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            4567788999999999999987 667899999532  110            0 111122221     245899999999


Q ss_pred             CCCEEEEEEEEeCC
Q psy11701        190 SDTGNYGCNATNSL  203 (745)
Q Consensus       190 ~d~G~Y~C~~~~~~  203 (745)
                      +|+|.|.|.+.+..
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          82 EDSAVYLCASSLGG   95 (110)
T ss_pred             hhCEEEEEEeeCCC
Confidence            99999999998653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.23  E-value=5.6e-06  Score=66.23  Aligned_cols=65  Identities=20%  Similarity=0.270  Sum_probs=46.2

Q ss_pred             eEecCCcEEEEEEEeec--CCCeeEEEECC--EecC------------CCCCeEeccC--CcEEEEccCCCCCCEEEEEE
Q psy11701         44 VALRNKKVELFCIFGGT--PLPQTIWSKDG--VPIN------------PSDRISQGNY--GKSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        44 ~v~~G~~~~l~C~~~g~--p~~~v~W~~~~--~~i~------------~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~  105 (745)
                      .+.+|++|+|.|...+.  ....+.|||..  ....            ...++.....  ...|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            57899999999998754  44579999832  1111            0234443322  24799999999999999999


Q ss_pred             EEe
Q psy11701        106 VSN  108 (745)
Q Consensus       106 ~~~  108 (745)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.22  E-value=1e-05  Score=65.97  Aligned_cols=77  Identities=19%  Similarity=0.300  Sum_probs=54.2

Q ss_pred             CCCeEEEEEEEeecC------CCeEEEEeCCE----e----ccC-------CCCCCceee-----cCceEEEccCCCCCC
Q psy11701        139 EEETVTFECKASGLP------EPEIHWVHNGK----P----ISQ-------APPNPRRKV-----GPNRITIENLRKSDT  192 (745)
Q Consensus       139 ~G~~~~l~C~~~~~p------~~~v~W~~~g~----~----~~~-------~~~~~~~~~-----~~~~L~i~~v~~~d~  192 (745)
                      .|++++|.|.....|      ...+.|+|...    .    +..       .....+...     ...+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999986542      34799999531    0    000       111123332     134799999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEe
Q psy11701        193 GNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       193 G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      |.|+|.+.+..+.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999988877777777775

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.22  E-value=7e-06  Score=64.19  Aligned_cols=76  Identities=20%  Similarity=0.347  Sum_probs=51.6

Q ss_pred             EecCceeEeeCCCeEEEEEEEee-cCCCe--EEEEeCCEeccCCCCCC---ceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        129 TVEPEFINAAEEETVTFECKASG-LPEPE--IHWVHNGKPISQAPPNP---RRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~-~p~~~--v~W~~~g~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .+.+....+.+|+.++|+|.+.| .|.+.  |.||++++.+.......   .......+|.+..-..+|.-.|+|+|.+.
T Consensus         5 ~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~   84 (100)
T cd05755           5 ELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELD   84 (100)
T ss_pred             EEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEec
Confidence            34445556789999999999976 67775  79999999997533221   11112356777655555555899999876


Q ss_pred             Cc
Q psy11701        203 LG  204 (745)
Q Consensus       203 ~g  204 (745)
                      .+
T Consensus        85 l~   86 (100)
T cd05755          85 LR   86 (100)
T ss_pred             cC
Confidence            53

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>smart00060 FN3 Fibronectin type 3 domain

Probab=98.20  E-value=9.2e-06  Score=62.59  Aligned_cols=80  Identities=25%  Similarity=0.429  Sum_probs=55.0

Q ss_pred             CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEE
Q psy11701        506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY  585 (745)
Q Consensus       506 ~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~  585 (745)
                      +|.++.+.....+++.|+|++|...++  .+|.++|..........+....  . ......+.+.+|.|++.|.|+|.|.
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~i~~L~~~~~Y~v~v~a~   77 (83)
T smart00060        3 PPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVN--V-TPSSTSYTLTGLKPGTEYEFRVRAV   77 (83)
T ss_pred             CCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEE--e-cCCccEEEEeCcCCCCEEEEEEEEE
Confidence            445677777777799999997765443  7888888765433211111111  1 1225789999999999999999999


Q ss_pred             ecCCC
Q psy11701        586 TKAGD  590 (745)
Q Consensus       586 n~~G~  590 (745)
                      +..|.
T Consensus        78 ~~~g~   82 (83)
T smart00060       78 NGAGE   82 (83)
T ss_pred             cccCC
Confidence            97654

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.20  E-value=0.0012  Score=64.94  Aligned_cols=220  Identities=19%  Similarity=0.202  Sum_probs=128.3

Q ss_pred             CcccCCCCCeeEeeccceeEecCCcEEEEEEEeecCC---CeeE-EEE-----------CCEec-C-----CCCC-----
Q psy11701         26 ASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPL---PQTI-WSK-----------DGVPI-N-----PSDR-----   79 (745)
Q Consensus        26 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~---~~v~-W~~-----------~~~~i-~-----~~~~-----   79 (745)
                      ++++.++|-.+.-...+..+.-|+.+.+.|.+.-...   ..++ |++           |.+.+ .     .+..     
T Consensus        81 ~~~p~s~~~~~~C~~~~vsa~Y~~~v~i~C~v~~~~~~~~~RLeiWf~~r~rf~~~~~gd~e~~vn~~~p~~~g~Llf~s  160 (486)
T PHA03273         81 ASQPHSHETTITCTKSLISVPYYKSVDMNCTTSVGVNYSEYRLEIYLNQRTPFSGTPPGDEENYVNHNATKDQTLLLFST  160 (486)
T ss_pred             CCCCCCCCcceEecCcccccccccceEEeecccCCCCCcceEEEEEEccccccccCCCCCcccccCCCCCCCCCEEEEec
Confidence            3666677777888888889999999999999632211   2233 853           11111 0     0000     


Q ss_pred             ----e-----------------------Eecc-CC--cEEEEccCCCCCCEEEEEEEEeCCeeeE-EEEEEEEEEecCeE
Q psy11701         80 ----I-----------------------SQGN-YG--KSLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSVLAAPYF  128 (745)
Q Consensus        80 ----~-----------------------~~~~-~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~l~V~~~p~~  128 (745)
                          +                       ..+. .+  -.|+|..++..++|.|+=...+..+... ...+.|....+|.+
T Consensus       161 a~~s~~~r~~~~~gi~p~~~p~y~l~~~p~~p~~~~~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psv  240 (486)
T PHA03273        161 AERSVKSRRGGQLGVIPDRLPKRQLFNLPLHTEGGTKFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLV  240 (486)
T ss_pred             CCCccccccccccccccccccchhhccCCCCCCCCCccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcc
Confidence                1                       0010 11  2499999999999999877766544333 34456666889988


Q ss_pred             EecCceeEeeCCCeEEEEEEEee-cCC--CeEEEEeCCEeccC-CCCCCcee-ec------CceEEEccCCC-CCCEEEE
Q psy11701        129 TVEPEFINAAEEETVTFECKASG-LPE--PEIHWVHNGKPISQ-APPNPRRK-VG------PNRITIENLRK-SDTGNYG  196 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~-~p~--~~v~W~~~g~~~~~-~~~~~~~~-~~------~~~L~i~~v~~-~d~G~Y~  196 (745)
                      .+.+..  +.+|+...-.|.+.. +|.  ..+.|+.||.++.. ........ ..      .++|.+..... +..=..+
T Consensus       241 sv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lr  318 (486)
T PHA03273        241 DLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLR  318 (486)
T ss_pred             cccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCce
Confidence            777664  789999999999977 444  38999999999872 22122222 11      22344443222 2233699


Q ss_pred             EEEEe-CCceEEEE----EEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCC--CeEEEeeCC
Q psy11701        197 CNATN-SLGYVYKD----VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPK--PEVNWIHNQ  256 (745)
Q Consensus       197 C~~~~-~~g~~~~~----~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~--~~i~W~~~~  256 (745)
                      |.+.- ..+.....    +.-.|. .+|.+.+     ....|.   ..|.+.-.|.  ..+.|..++
T Consensus       319 C~v~W~rd~vS~~RfsAt~~P~Vy-~~P~Is~-----~F~~G~---AVCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        319 CSIEWYRDEVSFARIAKAGTPSVF-VAPTVSV-----TVEDGD---AVCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             EEEEEccCCcceeeccccccCccc-cCCeEEE-----EEeCCE---EEEecccccCCCeeEEEEccC
Confidence            99873 33322222    112222 3444432     233333   3355544443  689998876

>KOG4802|consensus

Probab=98.19  E-value=6.3e-06  Score=78.43  Aligned_cols=122  Identities=19%  Similarity=0.266  Sum_probs=70.4

Q ss_pred             cceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCc-------------ceeEEEeecCcccc
Q psy11701        564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPN-------------NLVISWTAMPEIEH  630 (745)
Q Consensus       564 ~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~-------------~~~v~W~~~~~~~~  630 (745)
                      ...+++.+++||..|+|+|+|+|..|.--+|+++.  ......+..++| +|+             ++.|-|-|+++   
T Consensus       208 e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSk--pf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~P~~s---  281 (516)
T KOG4802|consen  208 ENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSK--PFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWCPSKS---  281 (516)
T ss_pred             CceeeeeecCcceeEEEEEeeeecccccccCCCCC--CCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeCCCCC---
Confidence            34788999999999999999999876544443321  112222222222 222             24556655443   


Q ss_pred             CCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccc
Q psy11701        631 NAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFV  710 (745)
Q Consensus       631 ~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~  710 (745)
                      +-+|..|.|.|.-.......  .              ......|..                       +...+.|.+|.
T Consensus       282 dlPv~~Yki~Ws~~v~s~k~--~--------------m~tks~~~k-----------------------~thq~si~~L~  322 (516)
T KOG4802|consen  282 DLPVEKYKITWSLYVNSAKA--S--------------MITKSSYVK-----------------------DTHQFSIKELL  322 (516)
T ss_pred             CCcceeeEEEeehhhhhhhh--h--------------cccccceee-----------------------ccchhhhhhcC
Confidence            34678888888743211100  0              001111211                       22234488999


Q ss_pred             cCCcceeEEEEecCcccCCC
Q psy11701        711 PASKNFARVLAFNGAYNGPP  730 (745)
Q Consensus       711 p~~~Y~~~v~A~~~~G~g~~  730 (745)
                      |+..|.+.|.|...-|.+..
T Consensus       323 Pns~Y~VevqAi~y~g~~rL  342 (516)
T KOG4802|consen  323 PNSSYYVEVQAISYLGSRRL  342 (516)
T ss_pred             CCCeEEEEEEEEEeccCccc
Confidence            99999999999887776543

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.17  E-value=1.7e-05  Score=63.85  Aligned_cols=75  Identities=24%  Similarity=0.344  Sum_probs=49.2

Q ss_pred             CCeEEEEEEEeecC---CCeEEEEeCCE--ec---------cC---CCCCCceee-------cCceEEEccCCCCCCEEE
Q psy11701        140 EETVTFECKASGLP---EPEIHWVHNGK--PI---------SQ---APPNPRRKV-------GPNRITIENLRKSDTGNY  195 (745)
Q Consensus       140 G~~~~l~C~~~~~p---~~~v~W~~~g~--~~---------~~---~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y  195 (745)
                      |++++|.|......   ...+.|+|...  .+         ..   .....+...       +..+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            78999999986322   23788988541  11         00   001122221       235799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy11701        196 GCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       196 ~C~~~~~~g~~~~~~~l~v  214 (745)
                      +|.+.+..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776666566654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.17  E-value=2.4e-05  Score=61.04  Aligned_cols=73  Identities=29%  Similarity=0.518  Sum_probs=49.2

Q ss_pred             CcEEEEEEEeec-CCCeeEEEECC----EecC-----------C--CCCeEec---cCCcEEEEccCCCCCCEEEEEEEE
Q psy11701         49 KKVELFCIFGGT-PLPQTIWSKDG----VPIN-----------P--SDRISQG---NYGKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        49 ~~~~l~C~~~g~-p~~~v~W~~~~----~~i~-----------~--~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      ++++|.|..... ...+|+|.|..    ..+.           .  .+|+.+.   ..+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            468999998643 23389998832    1221           0  1344442   235689999999999999999987


Q ss_pred             eC-CeeeEEEEEEEEE
Q psy11701        108 NG-VGEAKSYSIDLSV  122 (745)
Q Consensus       108 ~~-~g~~~~~~~~l~V  122 (745)
                      .- .|... .+..|.|
T Consensus        81 tfP~G~~~-~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQ-SSTTVTV   95 (96)
T ss_pred             eCCCCCee-EEEEEEE
Confidence            54 55544 6677766

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.16  E-value=1.2e-05  Score=63.71  Aligned_cols=66  Identities=23%  Similarity=0.324  Sum_probs=47.8

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCEeccC---------------CCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGKPISQ---------------APPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~---------------~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      |++|+|.|.........+.|+|+......               .....+... .+++|.|.+++.+|+|.|+|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            88999999887655669999997543211               111122222 45789999999999999999998776


Q ss_pred             ce
Q psy11701        204 GY  205 (745)
Q Consensus       204 g~  205 (745)
                      +.
T Consensus        81 ~~   82 (92)
T cd05741          81 GV   82 (92)
T ss_pred             Cc
Confidence            43

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.16  E-value=2.3e-05  Score=58.26  Aligned_cols=77  Identities=17%  Similarity=0.270  Sum_probs=55.7

Q ss_pred             eeEeeCCCeEEEEEEEee--cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        134 FINAAEEETVTFECKASG--LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      +..+..|++++|+|....  .|.+.++|...+...-.     ....+..+|.+..+...|+|.++|.+............
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~   82 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD   82 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence            446889999999999955  34559999975543221     11234568999999999999999999866555555555


Q ss_pred             EEEe
Q psy11701        212 VNVL  215 (745)
Q Consensus       212 l~v~  215 (745)
                      |.|.
T Consensus        83 V~Vl   86 (88)
T cd07694          83 IKVL   86 (88)
T ss_pred             EEEE
Confidence            5554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.16  E-value=2.2e-05  Score=62.09  Aligned_cols=88  Identities=27%  Similarity=0.508  Sum_probs=64.2

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      .+|.++.+.. ....++.+.|+++....  +.+.+|.|.++...  ...+..+.........+.+.+|.+++.|.|+|+|
T Consensus         2 ~~p~~~~~~~-~~~~~~~v~W~~~~~~~--~~~~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a   76 (93)
T cd00063           2 SPPTNLRVTD-VTSTSVTLSWTPPEDDG--GPITGYVVEYREKG--SGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRA   76 (93)
T ss_pred             cCCCCcEEEE-ecCCEEEEEECCCCCCC--CcceeEEEEEeeCC--CCCCEEeeccCCcccEEEEccccCCCEEEEEEEE
Confidence            4677777766 66799999999864332  55778999887654  2233333331136788999999999999999999


Q ss_pred             ecCCCCCCCCcce
Q psy11701        483 FNGAYNGPPSEII  495 (745)
Q Consensus       483 ~n~~G~g~~S~~~  495 (745)
                      .+..|.|.++...
T Consensus        77 ~~~~~~~~~s~~~   89 (93)
T cd00063          77 VNGGGESPPSESV   89 (93)
T ss_pred             ECCCccCCCcccc
Confidence            9988888776533

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.15  E-value=1.4e-05  Score=61.21  Aligned_cols=61  Identities=25%  Similarity=0.346  Sum_probs=40.7

Q ss_pred             EEEEEEEeec-CCCeeEEEECCEecCCCCCeEeccCCc------EEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         51 VELFCIFGGT-PLPQTIWSKDGVPINPSDRISQGNYGK------SLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        51 ~~l~C~~~g~-p~~~v~W~~~~~~i~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      +.|.|.+.|. |.+.|.|+|++++|...........++      .|.+.....++.+.|+|+|.+...
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l   69 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL   69 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence            6899999665 888999999999987433222212222      355544444555699999987643

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.15  E-value=5.5e-06  Score=65.80  Aligned_cols=77  Identities=19%  Similarity=0.295  Sum_probs=52.5

Q ss_pred             eCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCC--------------CCceee--cCceEEEccCCCCCCEEEEEEEE
Q psy11701        138 AEEETVTFECKASG-LPEPEIHWVHNGKPISQAPP--------------NPRRKV--GPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       138 ~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~--------------~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      ..|++|+|.|.... .....+.|+|....+.....              ..+...  .+.+|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            46999999998754 44458999987543221110              112222  24689999999999999999999


Q ss_pred             eCCceE-EEEEEEEE
Q psy11701        201 NSLGYV-YKDVYVNV  214 (745)
Q Consensus       201 ~~~g~~-~~~~~l~v  214 (745)
                      ...|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            876654 34455554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.15  E-value=6e-06  Score=65.82  Aligned_cols=66  Identities=23%  Similarity=0.409  Sum_probs=48.8

Q ss_pred             ecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         46 LRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        46 ~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      ..|+.++|.|.+.|+ |. ..|+|++||..+.....   .....++     +.|.|.....+|.|.|+|+|.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            579999999999988 64 58999999999875542   1111222     2466766667799999999987643

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.13  E-value=7.4e-06  Score=68.05  Aligned_cols=70  Identities=17%  Similarity=0.349  Sum_probs=51.3

Q ss_pred             eccceeEecCCcEEEEEEEee--cCCCeeEEEEC--CEec------C-----------CCCCeEecc----CCcEEEEcc
Q psy11701         39 TRKKEVALRNKKVELFCIFGG--TPLPQTIWSKD--GVPI------N-----------PSDRISQGN----YGKSLIIKH   93 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g--~p~~~v~W~~~--~~~i------~-----------~~~~~~~~~----~~~~L~i~~   93 (745)
                      .|..+.+.+|++|+|.|.+.+  .+.+.+.|+|.  +..+      .           ...|+.+..    ....|+|.+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            456677899999999999977  56778999983  2211      0           123454432    234799999


Q ss_pred             CCCCCCEEEEEEEEe
Q psy11701         94 VEFSDQGSYTCEVSN  108 (745)
Q Consensus        94 ~~~~d~G~Y~C~~~~  108 (745)
                      ++.+|+|.|.|.+..
T Consensus        84 ~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          84 LEKEDSATYYCAYWE   98 (116)
T ss_pred             CCHHHCEEEEEEEec
Confidence            999999999999964

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.12  E-value=2e-05  Score=60.24  Aligned_cols=60  Identities=22%  Similarity=0.405  Sum_probs=40.9

Q ss_pred             EEEEEEEeec-CCCeeEEEECCEecCCCCC-eEeccCCc------EEEEccCCCCCCEEEEEEEEeCC
Q psy11701         51 VELFCIFGGT-PLPQTIWSKDGVPINPSDR-ISQGNYGK------SLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        51 ~~l~C~~~g~-p~~~v~W~~~~~~i~~~~~-~~~~~~~~------~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      ++|+|.+.|. |.+.|+|++||++|..... ......++      .|.|.....+|...|+|+|.+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~   69 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES   69 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence            6899999775 8889999999999875432 22222322      34443344455569999998764

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.11  E-value=2.4e-05  Score=62.29  Aligned_cols=75  Identities=28%  Similarity=0.291  Sum_probs=48.2

Q ss_pred             CCcEEEEEEEeecCC-CeeEEEECCE----ecC-----C--------CCCeEe---ccCCcEEEEccCCCCCCEEEEEEE
Q psy11701         48 NKKVELFCIFGGTPL-PQTIWSKDGV----PIN-----P--------SDRISQ---GNYGKSLIIKHVEFSDQGSYTCEV  106 (745)
Q Consensus        48 G~~~~l~C~~~g~p~-~~v~W~~~~~----~i~-----~--------~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~  106 (745)
                      |++|+|.|....... ..|.|+|...    .|.     .        .+|+.+   .....+|+|.+++.+|+|.|+|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998754332 2699998421    110     0        112222   123458999999999999999999


Q ss_pred             EeCCeeeEEEEEEEEE
Q psy11701        107 SNGVGEAKSYSIDLSV  122 (745)
Q Consensus       107 ~~~~g~~~~~~~~l~V  122 (745)
                      ........+..+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7543333435566665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.11  E-value=1.4e-05  Score=65.64  Aligned_cols=71  Identities=20%  Similarity=0.352  Sum_probs=53.1

Q ss_pred             eCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEE---------------ccCceEEEee-----cCcEEEcccCCCCC
Q psy11701        223 EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE---------------LTGGRYTILE-----TGDLKITDVAFADS  282 (745)
Q Consensus       223 ~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~---------------~~~~~~~~~~-----~~~l~i~~~~~~d~  282 (745)
                      ..|..+.+.+|++++|.|.+.+.+...+.|++....               ...+++....     ...|.|.+++.+|+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS   82 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence            345677889999999999998776778999984311               1234444432     23699999999999


Q ss_pred             EEEEEEEEeCC
Q psy11701        283 GEYTCFARNKL  293 (745)
Q Consensus       283 G~Y~C~~~n~~  293 (745)
                      |.|.|.+.+..
T Consensus        83 G~Y~C~~~~~~   93 (109)
T cd04983          83 AVYFCALSESG   93 (109)
T ss_pred             EEEEEEEecCC
Confidence            99999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.11  E-value=4e-05  Score=60.52  Aligned_cols=74  Identities=27%  Similarity=0.548  Sum_probs=49.2

Q ss_pred             CcEEEEEEEeec-CCC---eeEEEECC--E--ec-----------CC--CCCeEecc---CCcEEEEccCCCCCCEEEEE
Q psy11701         49 KKVELFCIFGGT-PLP---QTIWSKDG--V--PI-----------NP--SDRISQGN---YGKSLIIKHVEFSDQGSYTC  104 (745)
Q Consensus        49 ~~~~l~C~~~g~-p~~---~v~W~~~~--~--~i-----------~~--~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C  104 (745)
                      .+|+|.|..... |..   +|.|.+..  .  .+           ..  .+|+.+..   .+.+|.|.+++.+|+|.|+|
T Consensus         1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C   80 (99)
T cd05886           1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC   80 (99)
T ss_pred             CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence            368999999632 211   69998731  1  11           00  23444432   24689999999999999999


Q ss_pred             EEEe-CCeeeEEEEEEEEEE
Q psy11701        105 EVSN-GVGEAKSYSIDLSVL  123 (745)
Q Consensus       105 ~~~~-~~g~~~~~~~~l~V~  123 (745)
                      .+.+ ..|. .+..+.|.|.
T Consensus        81 ~v~t~P~g~-~~~~~~L~V~   99 (99)
T cd05886          81 EFATFPTGN-RESQLNLTVY   99 (99)
T ss_pred             EEEeCCCCC-eEEEEEEEEC
Confidence            9998 4554 4466777763

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.09  E-value=2.5e-05  Score=62.92  Aligned_cols=75  Identities=31%  Similarity=0.575  Sum_probs=50.8

Q ss_pred             CCcEEEEEEEeecC-------CCeeEEEECC-----Eec----CC----------CCCeEecc-----CCcEEEEccCCC
Q psy11701         48 NKKVELFCIFGGTP-------LPQTIWSKDG-----VPI----NP----------SDRISQGN-----YGKSLIIKHVEF   96 (745)
Q Consensus        48 G~~~~l~C~~~g~p-------~~~v~W~~~~-----~~i----~~----------~~~~~~~~-----~~~~L~i~~~~~   96 (745)
                      |++|+|.|...-.|       .+.|.|.|..     +.+    ..          .+|+.+..     ...+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78999999975332       3589998741     111    00          13444422     345899999999


Q ss_pred             CCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701         97 SDQGSYTCEVSNGVGEAKSYSIDLSVL  123 (745)
Q Consensus        97 ~d~G~Y~C~~~~~~g~~~~~~~~l~V~  123 (745)
                      +|+|.|+|.+....... ...+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~-~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDE-QDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCccc-EEEEEEEEE
Confidence            99999999999854333 366777775

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.08  E-value=2.8e-05  Score=62.31  Aligned_cols=74  Identities=28%  Similarity=0.390  Sum_probs=50.1

Q ss_pred             CeEEEEEEEeecC---CCeEEEEeCCEe----c---c-------CCCCCCceee-----cCceEEEccCCCCCCEEEEEE
Q psy11701        141 ETVTFECKASGLP---EPEIHWVHNGKP----I---S-------QAPPNPRRKV-----GPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       141 ~~~~l~C~~~~~p---~~~v~W~~~g~~----~---~-------~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      ++++|.|.....+   ...+.|+|....    +   .       ......+...     .+..|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5789999987643   347999995421    0   0       0111112211     346899999999999999999


Q ss_pred             EEe-CCceEEEEEEEEE
Q psy11701        199 ATN-SLGYVYKDVYVNV  214 (745)
Q Consensus       199 ~~~-~~g~~~~~~~l~v  214 (745)
                      +.. +.|.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            974 6677777777766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.08  E-value=2.7e-05  Score=64.05  Aligned_cols=74  Identities=22%  Similarity=0.348  Sum_probs=49.3

Q ss_pred             cCceeEeeCCCeEEEEEEEeecC----CCeEEEEeC----CEe--cc----------CCCCCCcee------ecCceEEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLP----EPEIHWVHN----GKP--IS----------QAPPNPRRK------VGPNRITI  184 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~----g~~--~~----------~~~~~~~~~------~~~~~L~i  184 (745)
                      .|....+.+|++++|.|.....+    ...+.|++.    +..  +-          ......+..      ..+.+|.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            35667889999999999986432    236999851    111  10          001111221      12457999


Q ss_pred             ccCCCCCCEEEEEEEEeCCc
Q psy11701        185 ENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      .+++.+|+|.|.|.+.|..+
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCC
Confidence            99999999999999998654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.07  E-value=6.8e-05  Score=60.43  Aligned_cols=76  Identities=30%  Similarity=0.475  Sum_probs=52.7

Q ss_pred             CCeEEEEEEEeecC-----------CCeEEEEeC-----CEe-----c---------cCCCCCCceee-------cCceE
Q psy11701        140 EETVTFECKASGLP-----------EPEIHWVHN-----GKP-----I---------SQAPPNPRRKV-------GPNRI  182 (745)
Q Consensus       140 G~~~~l~C~~~~~p-----------~~~v~W~~~-----g~~-----~---------~~~~~~~~~~~-------~~~~L  182 (745)
                      |++++|.|...-.|           ...|.|++-     |+.     +         .......+...       ++.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            78899999986322           238999874     111     1         01122223332       35689


Q ss_pred             EEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       183 ~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      .|.+++.+|+|.|.|.+.+........+.|.|.
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999999999887777777777775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.06  E-value=3.4e-05  Score=62.19  Aligned_cols=77  Identities=22%  Similarity=0.332  Sum_probs=51.7

Q ss_pred             CCCeEEEEEEEeecC-------CCeEEEEeCC-----Eec-----------cCCCCCCceee-------cCceEEEccCC
Q psy11701        139 EEETVTFECKASGLP-------EPEIHWVHNG-----KPI-----------SQAPPNPRRKV-------GPNRITIENLR  188 (745)
Q Consensus       139 ~G~~~~l~C~~~~~p-------~~~v~W~~~g-----~~~-----------~~~~~~~~~~~-------~~~~L~i~~v~  188 (745)
                      .|++++|+|...-.|       .+.+.|.|..     +.+           .......+...       ++.+|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            378999999965322       3589999741     111           01112223332       24589999999


Q ss_pred             CCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        189 KSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      .+|+|.|.|.+.......+..+.|.|.
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999866556666777665

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.05  E-value=2.9e-05  Score=62.92  Aligned_cols=80  Identities=18%  Similarity=0.305  Sum_probs=54.9

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCC---eEeccC-C-----cEEEEccCCCCC-C
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDR---ISQGNY-G-----KSLIIKHVEFSD-Q   99 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~---~~~~~~-~-----~~L~i~~~~~~d-~   99 (745)
                      +|...+..|....+.+++.++|.|.+.|+ |.. +|.|+|||+.+..+..   ...... +     +.|.|......+ .
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~   81 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR   81 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence            47777777777777788899999999887 543 8999999998875422   122222 2     246665444444 3


Q ss_pred             EEEEEEEEeCCe
Q psy11701        100 GSYTCEVSNGVG  111 (745)
Q Consensus       100 G~Y~C~~~~~~g  111 (745)
                      -.|+|.+.....
T Consensus        82 ~~ytC~V~H~g~   93 (115)
T cd05769          82 NTFTCIVQFYGG   93 (115)
T ss_pred             CeEEEEEEEeCC
Confidence            489999987543

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.05  E-value=4.1e-05  Score=61.20  Aligned_cols=73  Identities=23%  Similarity=0.449  Sum_probs=48.5

Q ss_pred             CcEEEEEEEeecC---CCeeEEEEC--CE---ecC---C----------CCCeEecc----CCcEEEEccCCCCCCEEEE
Q psy11701         49 KKVELFCIFGGTP---LPQTIWSKD--GV---PIN---P----------SDRISQGN----YGKSLIIKHVEFSDQGSYT  103 (745)
Q Consensus        49 ~~~~l~C~~~g~p---~~~v~W~~~--~~---~i~---~----------~~~~~~~~----~~~~L~i~~~~~~d~G~Y~  103 (745)
                      .+|+|.|.....+   ..+|.|+|.  +.   .+.   .          .+|..+..    .+.+|+|.+++.+|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~   80 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK   80 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence            3689999996443   338999983  21   110   0          13444432    2458999999999999999


Q ss_pred             EEEEe-CCeeeEEEEEEEEE
Q psy11701        104 CEVSN-GVGEAKSYSIDLSV  122 (745)
Q Consensus       104 C~~~~-~~g~~~~~~~~l~V  122 (745)
                      |.+.+ ..|.. +..+.|.|
T Consensus        81 C~v~~~p~g~~-~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNF-EAELVLTV   99 (100)
T ss_pred             EEEEeCCCCCe-eeEEEEEe
Confidence            99987 44543 46666766

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.05  E-value=3.7e-05  Score=60.03  Aligned_cols=75  Identities=25%  Similarity=0.323  Sum_probs=51.4

Q ss_pred             CeEEEEEEEeec-CCCeEEEEeCC----EeccC----------CCCCCceee-----cCceEEEccCCCCCCEEEEEEEE
Q psy11701        141 ETVTFECKASGL-PEPEIHWVHNG----KPISQ----------APPNPRRKV-----GPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       141 ~~~~l~C~~~~~-p~~~v~W~~~g----~~~~~----------~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      ++++|+|..... ...+++|.|..    ..+..          .....+...     .+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            468999998642 33489998842    12210          111123222     35799999999999999999985


Q ss_pred             -eCCceEEEEEEEEEe
Q psy11701        201 -NSLGYVYKDVYVNVL  215 (745)
Q Consensus       201 -~~~g~~~~~~~l~v~  215 (745)
                       .+.|....+..|.|.
T Consensus        81 tfP~G~~~~~~~l~~~   96 (96)
T cd05887          81 TFPLGNTQSSTTVTVL   96 (96)
T ss_pred             eCCCCCeeEEEEEEEC
Confidence             677888888887763

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.05  E-value=3.2e-05  Score=66.51  Aligned_cols=83  Identities=23%  Similarity=0.292  Sum_probs=58.6

Q ss_pred             eeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccC---------CCCCCceee-----cCceEEEccCCCCCCEEEEEE
Q psy11701        134 FINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQ---------APPNPRRKV-----GPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~---------~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      ...+.+|++++|.|... +...+.++|+|..+.+..         .....+...     ....|+|.+++.+|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            45678999999999984 556679999996433210         111123332     457899999999999999999


Q ss_pred             EE-eCCc-eEEEEEEEEEee
Q psy11701        199 AT-NSLG-YVYKDVYVNVLA  216 (745)
Q Consensus       199 ~~-~~~g-~~~~~~~l~v~~  216 (745)
                      .. .+.| ..+...-|.|..
T Consensus       104 F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEecCCCCCceeEEEEEEEc
Confidence            86 4456 556666777764

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.04  E-value=2.1e-05  Score=61.89  Aligned_cols=74  Identities=14%  Similarity=0.243  Sum_probs=50.5

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCC-ceeecCceEEEccCCCCCCEEEEEEEEe
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP-RRKVGPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      |.+...| ...|.+|++|+|.|.... +...+.|+|+|.......... ........|.|.+++.+|+|.|.|....
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            4444444 345789999999998865 556899999887643211000 0111234789999999999999999763

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.04  E-value=2.1e-05  Score=65.28  Aligned_cols=72  Identities=19%  Similarity=0.303  Sum_probs=51.9

Q ss_pred             EeeccceeEecCCcEEEEEEEeec-CCCeeEEEEC--CEe---c---------CCCCCeEec----cCCcEEEEccCCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKD--GVP---I---------NPSDRISQG----NYGKSLIIKHVEFS   97 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~--~~~---i---------~~~~~~~~~----~~~~~L~i~~~~~~   97 (745)
                      ...|..+.+.+|++|+|.|..... ....+.|+|.  +..   |         ...+|+.+.    ....+|+|.+++.+
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   82 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE   82 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence            345677889999999999998653 4457999982  211   1         113455543    22347999999999


Q ss_pred             CCEEEEEEEEe
Q psy11701         98 DQGSYTCEVSN  108 (745)
Q Consensus        98 d~G~Y~C~~~~  108 (745)
                      |+|.|.|.+..
T Consensus        83 Dsg~Y~C~~~~   93 (116)
T cd07706          83 DSAKYFCALST   93 (116)
T ss_pred             HCEEEEEEEEC
Confidence            99999999974

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.04  E-value=7.5e-05  Score=60.20  Aligned_cols=75  Identities=31%  Similarity=0.499  Sum_probs=51.7

Q ss_pred             CCcEEEEEEEeecC-----------CCeeEEEEC-----CE-----ec--C----------CCCCeEec-----cCCcEE
Q psy11701         48 NKKVELFCIFGGTP-----------LPQTIWSKD-----GV-----PI--N----------PSDRISQG-----NYGKSL   89 (745)
Q Consensus        48 G~~~~l~C~~~g~p-----------~~~v~W~~~-----~~-----~i--~----------~~~~~~~~-----~~~~~L   89 (745)
                      |.+++|.|...-.|           ...|.|++-     ++     .+  .          -.+|..+.     ..+.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            78999999997443           227999873     11     11  0          01344442     234689


Q ss_pred             EEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701         90 IIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL  123 (745)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~  123 (745)
                      .|.+++.+|+|.|+|.+.+...... ..+.|.|.
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~-~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQ-DTVSLDVS  114 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccE-EEEEEEEE
Confidence            9999999999999999998765554 66777775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.03  E-value=0.0005  Score=67.63  Aligned_cols=193  Identities=20%  Similarity=0.259  Sum_probs=111.2

Q ss_pred             EEEEccCCCCCCEEEEEEEEeCC-e-eeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEee-cCC--CeEEEEeC
Q psy11701         88 SLIIKHVEFSDQGSYTCEVSNGV-G-EAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG-LPE--PEIHWVHN  162 (745)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~-g-~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~--~~v~W~~~  162 (745)
                      .|.|.+++..++|.|.=++.+.. + ....+.+.|.+..+|.+.+.+..  +.+|+...-.|.+.. +|.  ..+.|+.|
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~SvrlrWf~n  367 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVKWTSN  367 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            59999999999999987765432 2 22346688888899987777664  789999999999977 444  38999999


Q ss_pred             CEeccCCCCCCcee-ecCc------eEEEccCCCCC--CEEEEEEEEe-CCceEEEE----EEEEEeecCCeeeeCCCce
Q psy11701        163 GKPISQAPPNPRRK-VGPN------RITIENLRKSD--TGNYGCNATN-SLGYVYKD----VYVNVLAHAPEITEAPKDE  228 (745)
Q Consensus       163 g~~~~~~~~~~~~~-~~~~------~L~i~~v~~~d--~G~Y~C~~~~-~~g~~~~~----~~l~v~~~~p~~~~~~~~~  228 (745)
                      |.++.......... ..++      +|.+......|  -=..+|.+.- ..+.....    +.-.|. .+|.+.+     
T Consensus       368 g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY-~~PtISm-----  441 (566)
T PHA03269        368 FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVY-PFPNVSI-----  441 (566)
T ss_pred             CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccc-cCCeEEE-----
Confidence            99887432222222 1222      33332221112  2246999873 33322222    122222 3444432     


Q ss_pred             EEecCceEEEEEEEeecCC--CeEEEeeCCEEccCceEEEe-----ecCcEEEccc---CCCC-CEEEEEEEEe
Q psy11701        229 YTVDGKTVVLTCRVFGAPK--PEVNWIHNQKELTGGRYTIL-----ETGDLKITDV---AFAD-SGEYTCFARN  291 (745)
Q Consensus       229 ~v~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~-----~~~~l~i~~~---~~~d-~G~Y~C~~~n  291 (745)
                      .+..|.   ..|.+.-.|.  ..+.|..++.........+.     ..+-..+...   ...| .-.|+|++..
T Consensus       442 ~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~G  512 (566)
T PHA03269        442 EIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDG  512 (566)
T ss_pred             EEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEee
Confidence            233343   2355444433  47999987765443332221     1223444442   2232 2489999863

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.01  E-value=8.3e-05  Score=58.73  Aligned_cols=73  Identities=21%  Similarity=0.395  Sum_probs=48.9

Q ss_pred             eEEEEEEEee-cCCC---eEEEEeCC--E--ecc----------CCCCCCceee-----cCceEEEccCCCCCCEEEEEE
Q psy11701        142 TVTFECKASG-LPEP---EIHWVHNG--K--PIS----------QAPPNPRRKV-----GPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       142 ~~~l~C~~~~-~p~~---~v~W~~~g--~--~~~----------~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      +++|.|.... .|..   +|+|.+..  .  .+.          ......+...     .+.+|.|.+++.+|.|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            6899999864 2222   79998841  1  110          0011122221     347899999999999999999


Q ss_pred             EEe-CCceEEEEEEEEE
Q psy11701        199 ATN-SLGYVYKDVYVNV  214 (745)
Q Consensus       199 ~~~-~~g~~~~~~~l~v  214 (745)
                      +.+ +.|..+..+.|.|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            998 6787777777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.00  E-value=1.3e-05  Score=65.22  Aligned_cols=75  Identities=20%  Similarity=0.326  Sum_probs=51.2

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecC-CCeEEEEeCC--Ee---cc-C-----CCCCCceee----cCceEEEccCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLP-EPEIHWVHNG--KP---IS-Q-----APPNPRRKV----GPNRITIENLRKSD  191 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~g--~~---~~-~-----~~~~~~~~~----~~~~L~i~~v~~~d  191 (745)
                      +...|....+.+|++++|.|.+.+.. ...+.|||..  +.   +. .     .....++..    ....|.|.+++.+|
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   82 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED   82 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence            34557778899999999999997654 5689999842  11   11 0     001122222    22469999999999


Q ss_pred             CEEEEEEEEeC
Q psy11701        192 TGNYGCNATNS  202 (745)
Q Consensus       192 ~G~Y~C~~~~~  202 (745)
                      +|.|.|.+.+.
T Consensus        83 sg~Y~Ca~~~~   93 (106)
T cd04980          83 AAVYYCQQYGT   93 (106)
T ss_pred             CEEEEEEEeCC
Confidence            99999998643

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.00  E-value=2.8e-05  Score=61.86  Aligned_cols=78  Identities=22%  Similarity=0.451  Sum_probs=53.4

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeec-C-CCeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGT-P-LPQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGS  101 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p-~~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~  101 (745)
                      +|...+..|......+++.++|.|.+.|+ | ...|.|+|||+++..+..   .....++     +.|.+..-...+...
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~   80 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV   80 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence            36666777777777788999999999886 5 448999999999864311   1112122     245565444445669


Q ss_pred             EEEEEEeC
Q psy11701        102 YTCEVSNG  109 (745)
Q Consensus       102 Y~C~~~~~  109 (745)
                      |+|.|...
T Consensus        81 ~sC~V~H~   88 (100)
T cd07699          81 YTCEVTHE   88 (100)
T ss_pred             EEEEEEec
Confidence            99999875

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.00  E-value=0.00062  Score=66.15  Aligned_cols=192  Identities=16%  Similarity=0.259  Sum_probs=109.4

Q ss_pred             EEEEccCCCCCCEEEEEEEEeCCee-eEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEee-cCC--CeEEEEeCC
Q psy11701         88 SLIIKHVEFSDQGSYTCEVSNGVGE-AKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG-LPE--PEIHWVHNG  163 (745)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~g~-~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~--~~v~W~~~g  163 (745)
                      .|.|..++.+.+|.|+=...+..+. ...+.+.|..+.+|.+.+.+..  +.+|+...-.|.+.. +|.  ..+.|++||
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng  260 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGG  260 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            4999999999999999998765443 3346677888889988777664  679999999999977 444  389999999


Q ss_pred             EeccCCCCC-Cceee-cCceEEEccCCCCCCE------EEEEEEEe-CCceEEEE----EEEEEeecCCeeeeCCCceEE
Q psy11701        164 KPISQAPPN-PRRKV-GPNRITIENLRKSDTG------NYGCNATN-SLGYVYKD----VYVNVLAHAPEITEAPKDEYT  230 (745)
Q Consensus       164 ~~~~~~~~~-~~~~~-~~~~L~i~~v~~~d~G------~Y~C~~~~-~~g~~~~~----~~l~v~~~~p~~~~~~~~~~v  230 (745)
                      .++..-... ..... .++--.++-++..+.+      ..+|.+.- ......+.    +.-.|+ .+|.+.+     .+
T Consensus       261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY-~~P~Isv-----~F  334 (466)
T PHA03270        261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVL-PRPTIEM-----EF  334 (466)
T ss_pred             ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccc-cCCeEEE-----EE
Confidence            988632211 11111 1121122223333322      68999873 33322222    222222 3444432     23


Q ss_pred             ecCceEEEEEEEeecC-CCeEEEeeCCEEccCceEEEe------ecCcEEEcccCC--CCCEEEEEEEE
Q psy11701        231 VDGKTVVLTCRVFGAP-KPEVNWIHNQKELTGGRYTIL------ETGDLKITDVAF--ADSGEYTCFAR  290 (745)
Q Consensus       231 ~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~~~~~~------~~~~l~i~~~~~--~d~G~Y~C~~~  290 (745)
                      ..|.   ..|.+.-.| ...+.|..++.........+.      ..+-..|.....  ++...|+|++.
T Consensus       335 ~dG~---AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plSd~~~eYTCrl~  400 (466)
T PHA03270        335 GGDE---AVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLSREHSEYTCRLV  400 (466)
T ss_pred             eCCE---EEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccccccCCceEEEEEe
Confidence            3333   234443333 358999987765543322221      112222222211  23469999986

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.99  E-value=7e-05  Score=61.97  Aligned_cols=74  Identities=23%  Similarity=0.402  Sum_probs=49.1

Q ss_pred             cCceeEeeCCCeEEEEEEEeecC----CCeEEEEeCCE------ecc-----------CCCCCCceee------cCceEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLP----EPEIHWVHNGK------PIS-----------QAPPNPRRKV------GPNRIT  183 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~g~------~~~-----------~~~~~~~~~~------~~~~L~  183 (745)
                      .|....+.+|++++|.|......    ...+.|++...      .+-           ......+...      .+.+|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            36677888999999999986422    24699986321      110           0001111111      235799


Q ss_pred             EccCCCCCCEEEEEEEEeCCc
Q psy11701        184 IENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       184 i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      |.+++.+|+|.|.|.+.+...
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCC
Confidence            999999999999999997654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.99  E-value=4.8e-05  Score=60.57  Aligned_cols=75  Identities=24%  Similarity=0.312  Sum_probs=49.5

Q ss_pred             CCeEEEEEEEeecCC-CeEEEEeCCE----ecc------C----CCCCCceee-----cCceEEEccCCCCCCEEEEEEE
Q psy11701        140 EETVTFECKASGLPE-PEIHWVHNGK----PIS------Q----APPNPRRKV-----GPNRITIENLRKSDTGNYGCNA  199 (745)
Q Consensus       140 G~~~~l~C~~~~~p~-~~v~W~~~g~----~~~------~----~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~  199 (745)
                      |++++|.|....... ..+.|+|...    .+.      .    .....+...     .+.+|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998754332 3799998432    110      0    011111111     3468999999999999999998


Q ss_pred             E-eCCceEEEEEEEEE
Q psy11701        200 T-NSLGYVYKDVYVNV  214 (745)
Q Consensus       200 ~-~~~g~~~~~~~l~v  214 (745)
                      . .+.|.....+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7 56676666666665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.98  E-value=3.3e-05  Score=58.85  Aligned_cols=62  Identities=21%  Similarity=0.334  Sum_probs=43.3

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCEeccCCCCCC------ceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        143 VTFECKASG-LPEPEIHWVHNGKPISQAPPNP------RRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~------~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      ++|.|.+.| +|.+.++|+|||+.+.......      ......+.|.+..-..++...|+|+|.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            689999977 7778999999999986432111      1111224567766666777889999987653

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.97  E-value=0.00011  Score=59.47  Aligned_cols=79  Identities=22%  Similarity=0.324  Sum_probs=52.7

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC-eEeccCC------cEEEEccCCCCCCE-
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR-ISQGNYG------KSLIIKHVEFSDQG-  100 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~-~~~~~~~------~~L~i~~~~~~d~G-  100 (745)
                      .+|..-++.+....+..|+.++|.|.+.|+ |. .+++|+|||+.+..... .....++      +.|.+. ....|.| 
T Consensus         4 ~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~   82 (111)
T cd05772           4 AKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHS   82 (111)
T ss_pred             cCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccC
Confidence            455665666666667789999999999886 54 48999999999864322 2111222      235554 3455555 


Q ss_pred             EEEEEEEeCC
Q psy11701        101 SYTCEVSNGV  110 (745)
Q Consensus       101 ~Y~C~~~~~~  110 (745)
                      .|+|.+.+..
T Consensus        83 ~ytC~V~H~~   92 (111)
T cd05772          83 QVTCEVQHRT   92 (111)
T ss_pred             ceEEEEEeCC
Confidence            5999998753

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.97  E-value=2.2e-05  Score=62.54  Aligned_cols=67  Identities=22%  Similarity=0.431  Sum_probs=48.9

Q ss_pred             eCCCeEEEEEEEeec-CC-CeEEEEeCCEeccCCCC-CCceeecC------ceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        138 AEEETVTFECKASGL-PE-PEIHWVHNGKPISQAPP-NPRRKVGP------NRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       138 ~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~~~~~-~~~~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      ..|+.+.|.|.+.|. |. +.++|+++|..+..... .......+      +.|.|.....+|.|.|+|+|.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            468999999999996 64 68999999999875442 11111222      3466666666799999999998754

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.96  E-value=3.3e-05  Score=61.79  Aligned_cols=68  Identities=19%  Similarity=0.246  Sum_probs=47.7

Q ss_pred             eeEecCCcEEEEEEEee-cCCCeeEEEECCE-----ec--------CCCCCeEecc----CCcEEEEccCCCCCCEEEEE
Q psy11701         43 EVALRNKKVELFCIFGG-TPLPQTIWSKDGV-----PI--------NPSDRISQGN----YGKSLIIKHVEFSDQGSYTC  104 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~-----~i--------~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C  104 (745)
                      +.+.+|++|+|.|.... .....+.|+|...     .|        ....|+.+..    ...+|+|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            35889999999999864 3455789998431     11        0123444421    22479999999999999999


Q ss_pred             EEEeCC
Q psy11701        105 EVSNGV  110 (745)
Q Consensus       105 ~~~~~~  110 (745)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            997643

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.96  E-value=8.1e-05  Score=59.49  Aligned_cols=73  Identities=15%  Similarity=0.367  Sum_probs=47.4

Q ss_pred             eEEEEEEEeecC---CCeEEEEeCCE-----ecc------C----CCCCCceee------cCceEEEccCCCCCCEEEEE
Q psy11701        142 TVTFECKASGLP---EPEIHWVHNGK-----PIS------Q----APPNPRRKV------GPNRITIENLRKSDTGNYGC  197 (745)
Q Consensus       142 ~~~l~C~~~~~p---~~~v~W~~~g~-----~~~------~----~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C  197 (745)
                      +++|+|......   ...+.|+|...     .+.      .    .....+...      .+.+|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999986433   34899998321     111      0    001112111      24689999999999999999


Q ss_pred             EEEe-CCceEEEEEEEEE
Q psy11701        198 NATN-SLGYVYKDVYVNV  214 (745)
Q Consensus       198 ~~~~-~~g~~~~~~~l~v  214 (745)
                      .+.+ +.|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9996 6676655566655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.95  E-value=2.9e-05  Score=63.09  Aligned_cols=65  Identities=23%  Similarity=0.378  Sum_probs=44.5

Q ss_pred             eEecCCcEEEEEEEeecC-CCeeEEEEC--C---Eec------CC-----------CCCeEe--ccC--CcEEEEccCCC
Q psy11701         44 VALRNKKVELFCIFGGTP-LPQTIWSKD--G---VPI------NP-----------SDRISQ--GNY--GKSLIIKHVEF   96 (745)
Q Consensus        44 ~v~~G~~~~l~C~~~g~p-~~~v~W~~~--~---~~i------~~-----------~~~~~~--~~~--~~~L~i~~~~~   96 (745)
                      .+.+|++|+|.|...+.. ...+.|||.  |   ..+      ..           ..++..  ...  ...|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            578999999999986533 447999983  2   110      00           123432  111  23699999999


Q ss_pred             CCCEEEEEEEEe
Q psy11701         97 SDQGSYTCEVSN  108 (745)
Q Consensus        97 ~d~G~Y~C~~~~  108 (745)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.94  E-value=3.3e-05  Score=59.01  Aligned_cols=61  Identities=20%  Similarity=0.443  Sum_probs=42.8

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeecC-------ceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        143 VTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGP-------NRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~~-------~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +.|.|.+.| +|.+.|+|+++|+.+..... ......+       +.|.|.....++...|+|+|.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            689999977 68899999999998875332 1111112       3455555556777899999998753

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.93  E-value=7.2e-05  Score=62.17  Aligned_cols=72  Identities=26%  Similarity=0.326  Sum_probs=49.4

Q ss_pred             eeccceeEecCCcEEEEEEEeecC------CCeeEEEECCE-----e-c---CC--------CCCeEe----ccCCcEEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTP------LPQTIWSKDGV-----P-I---NP--------SDRISQ----GNYGKSLI   90 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p------~~~v~W~~~~~-----~-i---~~--------~~~~~~----~~~~~~L~   90 (745)
                      ..|+.+.+.+|++|+|.|......      ...+.|+|...     . +   ..        .+|+.+    .....+|+
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~   83 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL   83 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence            346677899999999999875221      23689998421     1 1   00        134444    12234799


Q ss_pred             EccCCCCCCEEEEEEEEeC
Q psy11701         91 IKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~  109 (745)
                      |.+++.+|+|.|.|++...
T Consensus        84 I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          84 ISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EccCChhhCeEEEEEEEcC
Confidence            9999999999999999764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.90  E-value=7e-05  Score=57.28  Aligned_cols=61  Identities=18%  Similarity=0.356  Sum_probs=42.0

Q ss_pred             EEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeec------CceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        143 VTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVG------PNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       143 ~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +.|.|.+.+ .|.+.++|+++|+.+.... .......      .+.|.+.....++.+.|+|+|.|...
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l   69 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL   69 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence            689999976 5888999999999886432 1111111      23455555556667799999998754

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.90  E-value=0.0001  Score=57.70  Aligned_cols=66  Identities=27%  Similarity=0.386  Sum_probs=44.1

Q ss_pred             CcEEEEEEEeec-CCCeeEEEECCE----ec-----------CC--CCCeEecc---CCcEEEEccCCCCCCEEEEEEEE
Q psy11701         49 KKVELFCIFGGT-PLPQTIWSKDGV----PI-----------NP--SDRISQGN---YGKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        49 ~~~~l~C~~~g~-p~~~v~W~~~~~----~i-----------~~--~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      +.++|.|..... ...+|+|.|...    .|           ..  .+|+.+..   .+.+|+|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            468999998432 344889988321    11           11  13444432   34689999999999999999997


Q ss_pred             eC-CeeeE
Q psy11701        108 NG-VGEAK  114 (745)
Q Consensus       108 ~~-~g~~~  114 (745)
                      .- .|...
T Consensus        81 t~P~g~~~   88 (96)
T cd05889          81 TYPQGSWE   88 (96)
T ss_pred             eCCCCCeE
Confidence            54 55544

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.89  E-value=7.2e-05  Score=57.02  Aligned_cols=60  Identities=18%  Similarity=0.316  Sum_probs=40.3

Q ss_pred             EEEEEEEee-cCCCeeEEEECCEecCCCCCeEe-ccCC------cEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         51 VELFCIFGG-TPLPQTIWSKDGVPINPSDRISQ-GNYG------KSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        51 ~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~~-~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      ++|+|.+.| +|...|+|+|||+.+........ ...+      +.|.+.....+|...|+|+|.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            689999976 47789999999999875332211 1122      256665444455559999998753

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.86  E-value=7.3e-05  Score=62.03  Aligned_cols=73  Identities=27%  Similarity=0.423  Sum_probs=50.7

Q ss_pred             ecCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCE-----ecc-----------CCCCCCcee--e----cCceEEEcc
Q psy11701        130 VEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGK-----PIS-----------QAPPNPRRK--V----GPNRITIEN  186 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~-----~~~-----------~~~~~~~~~--~----~~~~L~i~~  186 (745)
                      ..|....+.+|+++.|.|... ......+.|++...     .+.           ......+..  .    ...+|.|.+
T Consensus         6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~   85 (114)
T PF07686_consen    6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN   85 (114)
T ss_dssp             EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred             EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence            346777889999999999998 44556999998322     111           000111111  1    124799999


Q ss_pred             CCCCCCEEEEEEEEeC
Q psy11701        187 LRKSDTGNYGCNATNS  202 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~  202 (745)
                      ++.+|+|.|.|.+...
T Consensus        86 l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   86 LQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             ESGGGEEEEEEEEEES
T ss_pred             CCcCcCEEEEEEEEEC
Confidence            9999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.84  E-value=5.7e-05  Score=62.72  Aligned_cols=72  Identities=29%  Similarity=0.519  Sum_probs=50.6

Q ss_pred             ecCceeEeeCCCeEEEEEEEee--cCCCeEEEEeC--CEec------cC--------CCCCCceee------cCceEEEc
Q psy11701        130 VEPEFINAAEEETVTFECKASG--LPEPEIHWVHN--GKPI------SQ--------APPNPRRKV------GPNRITIE  185 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~--g~~~------~~--------~~~~~~~~~------~~~~L~i~  185 (745)
                      ..|....+.+|++++|.|.+.+  .+...+.|+|.  |...      ..        .....++..      ....|+|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            3466778889999999999977  56779999994  2211      00        001123321      23579999


Q ss_pred             cCCCCCCEEEEEEEEe
Q psy11701        186 NLRKSDTGNYGCNATN  201 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~  201 (745)
                      +++.+|+|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.84  E-value=9.9e-05  Score=60.93  Aligned_cols=71  Identities=18%  Similarity=0.251  Sum_probs=48.9

Q ss_pred             eeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CE-e--c---C-----------CCCCeEec--cCC--cEEEEc
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GV-P--I---N-----------PSDRISQG--NYG--KSLIIK   92 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~-~--i---~-----------~~~~~~~~--~~~--~~L~i~   92 (745)
                      .+|....+.+|++|+|.|...+..  ...+.|||-  |+ +  |   .           -.+|+...  ...  ..|+|.
T Consensus         2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (117)
T cd04981           2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN   81 (117)
T ss_pred             ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence            356677899999999999885432  346999982  22 1  1   0           01344432  212  269999


Q ss_pred             cCCCCCCEEEEEEEEe
Q psy11701         93 HVEFSDQGSYTCEVSN  108 (745)
Q Consensus        93 ~~~~~d~G~Y~C~~~~  108 (745)
                      +++.+|+|.|.|.+..
T Consensus        82 ~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          82 SLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCHHHCEEEEEEEEc
Confidence            9999999999999864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.79  E-value=7.4e-05  Score=59.55  Aligned_cols=77  Identities=18%  Similarity=0.337  Sum_probs=48.7

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCC----eEecc--CC-----cEEEEccCCCCCC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDR----ISQGN--YG-----KSLIIKHVEFSDQ   99 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~----~~~~~--~~-----~~L~i~~~~~~d~   99 (745)
                      |...+..|....+..|..++|.|.+.|+ |.. .+.|+|||+++.....    ...+.  ++     +.|.|..-...+.
T Consensus         1 P~v~l~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~   80 (102)
T cd05768           1 PSVYVLPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAG   80 (102)
T ss_pred             CeEEEeCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCC
Confidence            3445566666666678999999999997 433 7899999998864321    11111  12     2355533333345


Q ss_pred             EEEEEEEEeC
Q psy11701        100 GSYTCEVSNG  109 (745)
Q Consensus       100 G~Y~C~~~~~  109 (745)
                      ..|+|.|...
T Consensus        81 ~~ytC~V~H~   90 (102)
T cd05768          81 DVFTCVVGHE   90 (102)
T ss_pred             CcEEEEeEeC
Confidence            5899999865

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.76  E-value=0.0003  Score=55.36  Aligned_cols=74  Identities=20%  Similarity=0.372  Sum_probs=44.2

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCC---CeEeccCCc--EEEEccCCCCCCEEEEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSD---RISQGNYGK--SLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~---~~~~~~~~~--~L~i~~~~~~d~G~Y~C~  105 (745)
                      |...+..+...    |+.++|.|.+.|+ |.. .++|+|+|+.+..+.   ......++.  ....-.+...+.+.|+|+
T Consensus         3 P~v~v~~~~~~----~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~   78 (93)
T cd07698           3 PEVRVTRKRAP----DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR   78 (93)
T ss_pred             CEEEEEecCCC----CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence            44444444332    7889999999997 544 899999997443221   222222221  111223344577899999


Q ss_pred             EEeCC
Q psy11701        106 VSNGV  110 (745)
Q Consensus       106 ~~~~~  110 (745)
                      +.+..
T Consensus        79 V~H~~   83 (93)
T cd07698          79 VEHSG   83 (93)
T ss_pred             EEeCC
Confidence            98753

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.76  E-value=9.5e-05  Score=60.19  Aligned_cols=66  Identities=24%  Similarity=0.416  Sum_probs=48.1

Q ss_pred             EEecCceEEEEEEEeec-CCCeEEEeeCCEE-----c-------------cCceEEEee-----cCcEEEcccCCCCCEE
Q psy11701        229 YTVDGKTVVLTCRVFGA-PKPEVNWIHNQKE-----L-------------TGGRYTILE-----TGDLKITDVAFADSGE  284 (745)
Q Consensus       229 ~v~~g~~~~l~C~~~~~-p~~~i~W~~~~~~-----~-------------~~~~~~~~~-----~~~l~i~~~~~~d~G~  284 (745)
                      .+.+|++++|.|.+... +...+.|++....     +             ...++....     ..+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999876 5568999984321     1             122333322     2269999999999999


Q ss_pred             EEEEEEeCCc
Q psy11701        285 YTCFARNKLG  294 (745)
Q Consensus       285 Y~C~~~n~~g  294 (745)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.75  E-value=0.00019  Score=56.08  Aligned_cols=74  Identities=15%  Similarity=0.277  Sum_probs=47.0

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCCe--EeccCC-----cEEEEccCCCCCCE-EE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDRI--SQGNYG-----KSLIIKHVEFSDQG-SY  102 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~~--~~~~~~-----~~L~i~~~~~~d~G-~Y  102 (745)
                      |...+..|+...+.-+..++|.|.+.|+ |.. +++|.|||+.+..+...  ...+.+     +.|.|.   .++.| .|
T Consensus         1 p~~~v~~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt---~~~~~~~y   77 (96)
T cd07697           1 PKPTIFSPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT---KDSLGKKF   77 (96)
T ss_pred             CCCeEECCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC---chhCCCeE
Confidence            4455566676667677889999999987 433 78999999987643211  111222     134443   33234 69


Q ss_pred             EEEEEeC
Q psy11701        103 TCEVSNG  109 (745)
Q Consensus       103 ~C~~~~~  109 (745)
                      +|.+...
T Consensus        78 sC~V~H~   84 (96)
T cd07697          78 RCIYKHE   84 (96)
T ss_pred             EEEEEEC
Confidence            9999874

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.75  E-value=0.00024  Score=55.21  Aligned_cols=66  Identities=15%  Similarity=0.301  Sum_probs=43.5

Q ss_pred             eCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCceeecCceEEE---ccCCCCCCEEEEEEEEeCC
Q psy11701        138 AEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRRKVGPNRITI---ENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       138 ~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i---~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ..|+..+|.|.+.| +|. ..++|+|||+.+............++++.+   ..+...+...|+|++.+..
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            35777899999999 454 489999999998722222222233444332   2345667778999998754

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.72  E-value=0.00025  Score=55.46  Aligned_cols=69  Identities=19%  Similarity=0.376  Sum_probs=44.7

Q ss_pred             eeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCC-CCCceeec------CceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        137 AAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAP-PNPRRKVG------PNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       137 v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~-~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      ...++.++|.|.+.| .|. ..++|++||+.+.... ........      .+.|.+......+...|+|+|.+....
T Consensus        11 ~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          11 TGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             cCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            335677999999999 555 5999999999874321 11111112      234555544445667899999987644

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.71  E-value=0.0065  Score=59.35  Aligned_cols=160  Identities=18%  Similarity=0.271  Sum_probs=95.0

Q ss_pred             ceEEEccCCCCCCEEEEEEEEeCCceEEE--EEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC---eEEEee
Q psy11701        180 NRITIENLRKSDTGNYGCNATNSLGYVYK--DVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP---EVNWIH  254 (745)
Q Consensus       180 ~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~--~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~---~i~W~~  254 (745)
                      ..|.|..++....|.|+=..-+..+....  .+.|... .+|.+.+.+  ..+..|+...-.|.+..+.++   .+.|++
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y-r~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~  258 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF-RRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFE  258 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe-cCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            47999999999999999998766554333  3444444 366665543  446789999999998776433   699999


Q ss_pred             CCEEccCceE-----EEeecCcEEEcccCCCCC------EEEEEEEEeCCceE-----EEEEEEEEeecceeecCCCcEE
Q psy11701        255 NQKELTGGRY-----TILETGDLKITDVAFADS------GEYTCFARNKLGTA-----QGSGSLTVKEHTHITDQPEDYE  318 (745)
Q Consensus       255 ~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~------G~Y~C~~~n~~g~~-----~~~~~l~v~~~p~~~~~p~~~~  318 (745)
                      |+..+...++     ....++-..+.-++..+.      =..+|.+.-.....     ++...-.|..+|.+     .+.
T Consensus       259 ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~I-----sv~  333 (466)
T PHA03270        259 GGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTI-----EME  333 (466)
T ss_pred             CCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeE-----EEE
Confidence            9988753221     111222122222222222      27789886332221     12222233333322     133


Q ss_pred             EecCCeEEEEEEEEecCCCCcEEEEeeCCeecc
Q psy11701        319 VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID  351 (745)
Q Consensus       319 ~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~  351 (745)
                      +..|.   ..|.+...|. .+.+.|..++....
T Consensus       334 F~dG~---AVCtA~CVPe-gV~l~W~V~D~~~p  362 (466)
T PHA03270        334 FGGDE---AVCTAACVPE-GVTLAWLLGADPAP  362 (466)
T ss_pred             EeCCE---EEEeccccCC-CCEEEEEecCCCCC
Confidence            34443   3488887775 68999998775553

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.71  E-value=0.00026  Score=55.32  Aligned_cols=73  Identities=16%  Similarity=0.304  Sum_probs=46.0

Q ss_pred             eeccceeEecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEEEEEEEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      .+|.......++.++|.|.+.|+ |. .+|+|+|||+.+..+..   .....++     +.|.|..-...+...|+|.|.
T Consensus         4 ~~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~   83 (94)
T cd05847           4 LHSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVT   83 (94)
T ss_pred             ECcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEE
Confidence            34444444456779999999886 54 48899999998743211   1122222     245555444445669999998


Q ss_pred             eCC
Q psy11701        108 NGV  110 (745)
Q Consensus       108 ~~~  110 (745)
                      +..
T Consensus        84 H~~   86 (94)
T cd05847          84 HQG   86 (94)
T ss_pred             ECC
Confidence            754

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.69  E-value=0.00032  Score=56.75  Aligned_cols=69  Identities=22%  Similarity=0.452  Sum_probs=44.1

Q ss_pred             eeEeeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCceeec------CceEEEccCCCCCCE-EEEEEEEeCC
Q psy11701        134 FINAAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRRKVG------PNRITIENLRKSDTG-NYGCNATNSL  203 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~~~~------~~~L~i~~v~~~d~G-~Y~C~~~~~~  203 (745)
                      ...+..|+.++|.|.+.| +|. ..++|+|||+.+............      .+.|.+.. ...|.| .|+|.+.+..
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            334567889999999988 564 599999999998643211111111      22344543 344444 5999999865

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>KOG1480|consensus

Probab=97.68  E-value=1.1e-05  Score=83.30  Aligned_cols=170  Identities=22%  Similarity=0.330  Sum_probs=106.3

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe---ccCC------cEEEEccCCCCCCE---E
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYG------KSLIIKHVEFSDQG---S  101 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~---~~~~------~~L~i~~~~~~d~G---~  101 (745)
                      +.++..|++..+..|.++.|.|.+...+  ++...-+.+-|........   +...      -++.|.--+.++.|   -
T Consensus        25 ~~~~~~p~~~yii~~~p~~l~c~a~~a~--~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d  102 (909)
T KOG1480|consen   25 PHFTTEPKSAYIIKNKPLRLQCKANPAT--QIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPED  102 (909)
T ss_pred             ceeeecCCccceecCCCccceecCCccc--ccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccc
Confidence            4478999999999999999999986433  3332222222222111110   1111      12334433444443   4


Q ss_pred             EEEE--EEeCCeeeEEEEEEEEEEe-cCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceee
Q psy11701        102 YTCE--VSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKV  177 (745)
Q Consensus       102 Y~C~--~~~~~g~~~~~~~~l~V~~-~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~  177 (745)
                      |.|+  +....|...+....+.+.. .-.|...|.-..|..+....+.|+. .+.|...++|+|++..+..  .......
T Consensus       103 ~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~  180 (909)
T KOG1480|consen  103 YWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRA  180 (909)
T ss_pred             eeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhh
Confidence            6555  4445553332222222211 2234556777788889999999987 6788899999999988875  2222334


Q ss_pred             cCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        178 GPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       178 ~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      ..+.|++..+...|.|+|+|+|.|..+...
T Consensus       181 ~d~~li~~~arlsd~~nytc~a~ni~~~r~  210 (909)
T KOG1480|consen  181 SDHNLIISQARLSDSGNYTCEATNIVAKRK  210 (909)
T ss_pred             hcCCccccchhhhhcccceeeeehhhcccc
Confidence            567899999999999999999998776543

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.68  E-value=0.00012  Score=59.01  Aligned_cols=65  Identities=26%  Similarity=0.339  Sum_probs=44.4

Q ss_pred             eEecCCcEEEEEEEeecCCCeeEEEEC--C--Eec------CC------------CCCeEe--ccCCcEEEEccCCCCCC
Q psy11701         44 VALRNKKVELFCIFGGTPLPQTIWSKD--G--VPI------NP------------SDRISQ--GNYGKSLIIKHVEFSDQ   99 (745)
Q Consensus        44 ~v~~G~~~~l~C~~~g~p~~~v~W~~~--~--~~i------~~------------~~~~~~--~~~~~~L~i~~~~~~d~   99 (745)
                      .+.+|++|+|.|.........+.|+|.  |  ..+      ..            ..++..  ......|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            478999999999986544457999983  2  111      00            112322  12233799999999999


Q ss_pred             EEEEEEEEe
Q psy11701        100 GSYTCEVSN  108 (745)
Q Consensus       100 G~Y~C~~~~  108 (745)
                      |.|.|.+..
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999999853

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.68  E-value=0.0044  Score=61.17  Aligned_cols=158  Identities=20%  Similarity=0.250  Sum_probs=94.3

Q ss_pred             ceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe-ecCCeeeeCCCceEEecCceEEEEEEEeecCCC---eEEEeeC
Q psy11701        180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL-AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP---EVNWIHN  255 (745)
Q Consensus       180 ~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~-~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~---~i~W~~~  255 (745)
                      ..|.|..++..+.|.|+=.+.+..+.......+.|. ..+|.+.+.+  ..+.+|+...-.|.+..+.++   .+.|++|
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            359999999999999986665655554444455552 2366655443  456789999999998776333   6999999


Q ss_pred             CEEccCceE-----EEeecC------cEEEcccCC-CCCEEEEEEEEeCCceE-E----EEEEEEEeecceeecCCCcEE
Q psy11701        256 QKELTGGRY-----TILETG------DLKITDVAF-ADSGEYTCFARNKLGTA-Q----GSGSLTVKEHTHITDQPEDYE  318 (745)
Q Consensus       256 ~~~~~~~~~-----~~~~~~------~l~i~~~~~-~d~G~Y~C~~~n~~g~~-~----~~~~l~v~~~p~~~~~p~~~~  318 (745)
                      +.++...++     ....++      +|++..... +..=..+|.+.-..+.. .    +...-.|..+|.+     .+.
T Consensus       276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~I-----s~~  350 (486)
T PHA03273        276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTV-----SVT  350 (486)
T ss_pred             CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeE-----EEE
Confidence            998862222     111122      344444322 23347899886332221 1    1222233333322     233


Q ss_pred             EecCCeEEEEEEEEecCCCCcEEEEeeCC
Q psy11701        319 VEAGQSATFRCNAVSDPSLKLSIVWLRGS  347 (745)
Q Consensus       319 ~~~g~~~~l~C~~~~~~~~~~~i~W~~~~  347 (745)
                      +..|+.   .|.+...|...+.+.|..++
T Consensus       351 F~~G~A---VCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        351 VEDGDA---VCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             EeCCEE---EEecccccCCCeeEEEEccC
Confidence            344433   48887776545899998776

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.67  E-value=0.011  Score=57.42  Aligned_cols=163  Identities=17%  Similarity=0.300  Sum_probs=96.3

Q ss_pred             ceEEEccCCCCCCEEEEEEEEeCCce--EEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC---eEEEee
Q psy11701        180 NRITIENLRKSDTGNYGCNATNSLGY--VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP---EVNWIH  254 (745)
Q Consensus       180 ~~L~i~~v~~~d~G~Y~C~~~~~~g~--~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~---~i~W~~  254 (745)
                      -.|.|.++...++|.|+....+....  ..+...+.+...||.+...+.  .+..|+...-.|.+..+.++   .+.|++
T Consensus       207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~  284 (490)
T PHA03271        207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQ  284 (490)
T ss_pred             eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            36899999999999886666654433  234466666667777766543  45689999999998876433   699999


Q ss_pred             CCEEccCceE---EE---------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCC-cEEEec
Q psy11701        255 NQKELTGGRY---TI---------LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE-DYEVEA  321 (745)
Q Consensus       255 ~~~~~~~~~~---~~---------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~-~~~~~~  321 (745)
                      ||..+.....   ..         ..-++|.+.+...+..=..+|.+.-..+......  .-...|.+...|. .+.+..
T Consensus       285 nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaatP~VY~~P~ISv~Fed  362 (490)
T PHA03271        285 NGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATAIPTVYHHPRISLAFKD  362 (490)
T ss_pred             CCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecccCCccccCCeEEEEEeC
Confidence            9887643211   10         0111344433322333478999864333221111  2222222222332 233444


Q ss_pred             CCeEEEEEEEEecCCCCcEEEEeeCCeec
Q psy11701        322 GQSATFRCNAVSDPSLKLSIVWLRGSEPI  350 (745)
Q Consensus       322 g~~~~l~C~~~~~~~~~~~i~W~~~~~~~  350 (745)
                      |+.   .|.+...|. ...+.|.-++...
T Consensus       363 G~A---VCtA~CVP~-gV~lrWlVgD~p~  387 (490)
T PHA03271        363 GYA---ICTIECVPS-GITVRWLVHDEPQ  387 (490)
T ss_pred             CEE---EEeccccCC-CcEEEEEecCCCC
Confidence            443   488877775 6899999877553

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.67  E-value=0.00016  Score=57.55  Aligned_cols=68  Identities=15%  Similarity=0.311  Sum_probs=45.6

Q ss_pred             EeeCCCeEEEEEEEee-cC-CCeEEEEeCCEeccCCCCCCc-eeecC------ceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        136 NAAEEETVTFECKASG-LP-EPEIHWVHNGKPISQAPPNPR-RKVGP------NRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       136 ~v~~G~~~~l~C~~~~-~p-~~~v~W~~~g~~~~~~~~~~~-~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ....++.++|.|.+.| +| ...++|++||+.+........ ....+      +.|.+.....++...|+|.+.+..
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            4456788999999998 55 459999999999853322111 11222      345555555556778999998764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.66  E-value=0.00051  Score=51.42  Aligned_cols=60  Identities=22%  Similarity=0.501  Sum_probs=40.0

Q ss_pred             cEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEEEEEEEEeC
Q psy11701         50 KVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        50 ~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .++|.|.+.|+ |. ..++|+|||+++..+..   .....++     +.|.|.....++...|+|.|.+.
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            37899999887 54 48999999997553311   1122222     24666555666667999999764

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.64  E-value=8.8e-05  Score=59.27  Aligned_cols=66  Identities=20%  Similarity=0.310  Sum_probs=44.9

Q ss_pred             EeeCCCeEEEEEEEeec--CCCeEEEEeCCE--ecc---------CCCCCCceee----cCceEEEccCCCCCCEEEEEE
Q psy11701        136 NAAEEETVTFECKASGL--PEPEIHWVHNGK--PIS---------QAPPNPRRKV----GPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       136 ~v~~G~~~~l~C~~~~~--p~~~v~W~~~g~--~~~---------~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      .+.+|++++|.|...+.  ....+.||+...  ...         ......++..    ....|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998764  455799998321  110         0011122222    234699999999999999999


Q ss_pred             EEe
Q psy11701        199 ATN  201 (745)
Q Consensus       199 ~~~  201 (745)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.64  E-value=0.00036  Score=52.23  Aligned_cols=62  Identities=21%  Similarity=0.427  Sum_probs=41.1

Q ss_pred             eEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCc-eeecC------ceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        142 TVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPR-RKVGP------NRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       142 ~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~-~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .++|.|.+.| +|. ..++|+|||+.+........ ....+      +.|.|.....++...|+|+|.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            3689999998 455 59999999997543221111 11122      356666666677789999998754

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.64  E-value=0.00044  Score=54.21  Aligned_cols=67  Identities=18%  Similarity=0.268  Sum_probs=43.4

Q ss_pred             eCCCeEEEEEEEee-cCCC-eEEEEeCCEeccCCCC-CCceeecCceEEE---ccCCCCCCEEEEEEEEeCCc
Q psy11701        138 AEEETVTFECKASG-LPEP-EIHWVHNGKPISQAPP-NPRRKVGPNRITI---ENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       138 ~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~~-~~~~~~~~~~L~i---~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      ..|+.++|.|.+.| +|.. .++|++||+.+..... ......+++++.+   ..+..++...|+|++.+...
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l   84 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL   84 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence            46899999999999 5554 8999999998775311 1112222222221   13344566689999998653

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.63  E-value=0.00047  Score=54.23  Aligned_cols=64  Identities=20%  Similarity=0.462  Sum_probs=41.0

Q ss_pred             CCeEEEEEEEee-cCCC-eEEEEeCCEeccCCCCC-CceeecCceEE---EccCCCCCCEEEEEEEEeCC
Q psy11701        140 EETVTFECKASG-LPEP-EIHWVHNGKPISQAPPN-PRRKVGPNRIT---IENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       140 G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~~~-~~~~~~~~~L~---i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      |+.++|.|.+.| .|.. .++|+++|+.+...... ......++++.   ...+...+.+.|+|++.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            788999999999 4554 99999999644322221 11222233222   23344458889999998764

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>KOG4258|consensus

Probab=97.63  E-value=9e-05  Score=77.86  Aligned_cols=132  Identities=17%  Similarity=0.315  Sum_probs=88.5

Q ss_pred             eeEEEecccccCcceeEEEEEecCCCC----CCCCcceEEeCC-----CCCCCCCCceeEEEcCCceEEEEeeCCCCCCC
Q psy11701        462 STTTEVDKFVPASKNFARVLAFNGAYN----GPPSEIISFVTP-----EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG  532 (745)
Q Consensus       462 ~~~~~i~~L~~~~~Y~~~V~a~n~~G~----g~~S~~~~~~t~-----~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g  532 (745)
                      ..++.|.+|...+.|.+.+.|.|..+.    |..+. +..+|.     ++.|+ |. ........+++.|.|.+|.+++|
T Consensus       781 ~~~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~-v~~RT~~~~~aD~i~g-~v-~we~~~~~~~v~l~w~EP~~pNG  857 (1025)
T KOG4258|consen  781 KESYVISGLRHFTLYRIDLQACNHATPKCGCSHAAF-VFARTMPTMGADDIPG-PV-TWECHIEMNSVILRWLEPKEPNG  857 (1025)
T ss_pred             chhhhhhccccchhhhhhHhhhcccccccccchhhh-hhhccccccccccCCC-ce-eEecccCcceEEEecCCCCCCCc
Confidence            346778899999999999999998776    33322 222221     22333 11 11222378899999999999999


Q ss_pred             ceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        533 VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       533 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      -|.+|.|.|+.......-..+....   ........+.+|.| ..|.++|+|.+-+|.|++.+.+.+.
T Consensus       858 li~~Y~Vk~r~~~~et~v~cvsR~~---~~k~~gv~l~~l~~-G~y~~~vratSlaGng~~t~~~~~~  921 (1025)
T KOG4258|consen  858 LILNYEVKYRRNGDETHVECVSRMD---YAKAGGVYLKRLNP-GNYSVRVRATSLAGNGSWTESVIFY  921 (1025)
T ss_pred             cEEEEEEEEeeccCcchhhhhhhhh---hhhcCceEEEecCC-CcEEEEEEEEeeccCCCCcCCcceE
Confidence            9999999999765443222111100   12334566777776 4799999999999999997665433

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.61  E-value=0.00074  Score=52.93  Aligned_cols=62  Identities=21%  Similarity=0.205  Sum_probs=41.2

Q ss_pred             ecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         46 LRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        46 ~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      .+|+.++|.|.+.|+ |.. .++|+|||+++.....   .....++     +.|.+   ...+...|+|++....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence            468999999999886 544 8899999999875311   1112222     13433   3345568999998753

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.61  E-value=0.0071  Score=59.87  Aligned_cols=160  Identities=19%  Similarity=0.209  Sum_probs=93.2

Q ss_pred             ceEEEccCCCCCCEEEEEEEEeC-Cce--EEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC---eEEEe
Q psy11701        180 NRITIENLRKSDTGNYGCNATNS-LGY--VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP---EVNWI  253 (745)
Q Consensus       180 ~~L~i~~v~~~d~G~Y~C~~~~~-~g~--~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~---~i~W~  253 (745)
                      -.|.|.++...+.|.|+=++.+. .+.  ....+.|.+.. +|.+.+.  ..-+.+|+...-.|.+..+.++   .+.|+
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr-~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf  365 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYK-RPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWT  365 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEec-CCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEE
Confidence            46999999999999998665432 222  23445555553 5655444  3456789999999998776433   69999


Q ss_pred             eCCEEccC----ceEEEeecC------cEEEcccCCCC--CEEEEEEEEeCCceE-----EEEEEEEEeecceeecCCCc
Q psy11701        254 HNQKELTG----GRYTILETG------DLKITDVAFAD--SGEYTCFARNKLGTA-----QGSGSLTVKEHTHITDQPED  316 (745)
Q Consensus       254 ~~~~~~~~----~~~~~~~~~------~l~i~~~~~~d--~G~Y~C~~~n~~g~~-----~~~~~l~v~~~p~~~~~p~~  316 (745)
                      +|+..+..    ..+....+|      +|++......|  .=..+|.+.-..+..     ++...-.|..+|.+     .
T Consensus       366 ~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtI-----S  440 (566)
T PHA03269        366 SNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNV-----S  440 (566)
T ss_pred             eCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeE-----E
Confidence            99888763    122222333      24332211111  235699886332221     12222233333322     2


Q ss_pred             EEEecCCeEEEEEEEEecCCCCcEEEEeeCCeec
Q psy11701        317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI  350 (745)
Q Consensus       317 ~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~  350 (745)
                      +.+..|..   .|.+...|.-...+.|..++...
T Consensus       441 m~FedG~A---VCtA~CVP~~~V~l~WlVgD~p~  471 (566)
T PHA03269        441 IEIIDGHI---VCLAKCVPRGVVHFNWWINDIPI  471 (566)
T ss_pred             EEEeCCEE---EEecccccCCCceEEEEecCCCC
Confidence            33444433   48887776644689999877653

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.60  E-value=0.00022  Score=59.08  Aligned_cols=73  Identities=21%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             EecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeC--CEe---cc------CCCCCCceee------cCceEEEccCCCC
Q psy11701        129 TVEPEFINAAEEETVTFECKASGL-PEPEIHWVHN--GKP---IS------QAPPNPRRKV------GPNRITIENLRKS  190 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~--g~~---~~------~~~~~~~~~~------~~~~L~i~~v~~~  190 (745)
                      ...|....+.+|++++|.|..... ....+.|+|.  +..   +.      ......++..      ....|.|.+++.+
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   82 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE   82 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence            345667788999999999998753 4568999983  211   10      0111233322      2347999999999


Q ss_pred             CCEEEEEEEEe
Q psy11701        191 DTGNYGCNATN  201 (745)
Q Consensus       191 d~G~Y~C~~~~  201 (745)
                      |+|.|.|.+..
T Consensus        83 Dsg~Y~C~~~~   93 (116)
T cd07706          83 DSAKYFCALST   93 (116)
T ss_pred             HCEEEEEEEEC
Confidence            99999999984

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00096 Ig Immunoglobulin domain

Probab=97.58  E-value=0.00036  Score=51.75  Aligned_cols=61  Identities=41%  Similarity=0.761  Sum_probs=46.4

Q ss_pred             EEEEEEEeecCCCeEEEEeCCEeccCCCC-----CCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        143 VTFECKASGLPEPEIHWVHNGKPISQAPP-----NPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       143 ~~l~C~~~~~p~~~v~W~~~g~~~~~~~~-----~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      +.|.|.+.+.+...+.|++++........     ..........|.|.++..+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            46899998877779999998877654321     11223345689999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.57  E-value=0.00056  Score=53.51  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=45.9

Q ss_pred             CeEEEEEEEee-cCCCeEEEEeCCE----ecc----------CCCCCCceee-----cCceEEEccCCCCCCEEEEEEEE
Q psy11701        141 ETVTFECKASG-LPEPEIHWVHNGK----PIS----------QAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       141 ~~~~l~C~~~~-~p~~~v~W~~~g~----~~~----------~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      +.++|.|.... ....+++|.|...    .+.          ......+...     .+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            46899999853 2345889998422    111          0111122221     34789999999999999999997


Q ss_pred             -eCCceEEEEEE
Q psy11701        201 -NSLGYVYKDVY  211 (745)
Q Consensus       201 -~~~g~~~~~~~  211 (745)
                       .+.|.....+.
T Consensus        81 t~P~g~~~~~i~   92 (96)
T cd05889          81 TYPQGSWEKVIE   92 (96)
T ss_pred             eCCCCCeEEEEE
Confidence             45666655544

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>KOG0613|consensus

Probab=97.56  E-value=0.00049  Score=76.52  Aligned_cols=443  Identities=14%  Similarity=0.034  Sum_probs=234.1

Q ss_pred             cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV  210 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~  210 (745)
                      .+.......++...|.|...+...+.+.|+.+.......      ..+.....|.+-...+.+.|+|...+..+.....+
T Consensus       235 ~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v  308 (1205)
T KOG0613|consen  235 APSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKV  308 (1205)
T ss_pred             ccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc------cCCCccccccccCCccccceeeecccCCcccceee
Confidence            345555667788888888888777777887765433321      22334566777777778888888877665544332


Q ss_pred             EEEEee---------------cCCee---eeCCCceEEecCceEEEEEEEeecCCCe-EEEeeCCEEccCce---EE---
Q psy11701        211 YVNVLA---------------HAPEI---TEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKELTGGR---YT---  265 (745)
Q Consensus       211 ~l~v~~---------------~~p~~---~~~~~~~~v~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~---~~---  265 (745)
                      ...+..               .++..   ...........+..+++.|...+...+. +.|+++......+.   ..   
T Consensus       309 ~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  388 (1205)
T KOG0613|consen  309 TEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVG  388 (1205)
T ss_pred             eEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccc
Confidence            222211               11111   1111223344577789999988877664 89998765432211   00   


Q ss_pred             EeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecC-----CCcEEE--ecCCeEEEEEEEEecCCCC
Q psy11701        266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ-----PEDYEV--EAGQSATFRCNAVSDPSLK  338 (745)
Q Consensus       266 ~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~-----p~~~~~--~~g~~~~l~C~~~~~~~~~  338 (745)
                      ......+.+..+...+.+.|.|.|.|..|.........+.........     ......  ..-+.+.+.|...+.+.+-
T Consensus       389 ~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~  468 (1205)
T KOG0613|consen  389 TVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPM  468 (1205)
T ss_pred             cccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccc
Confidence            011235788888889999999999999887644433444332211111     111111  2337788888888777543


Q ss_pred             cEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe-ccCCCCCCceeEEeecCc
Q psy11701        339 LSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ-VPLEAPSNFTLIQVIDAK  417 (745)
Q Consensus       339 ~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~-~pp~~P~~~~~~~~~~~~  417 (745)
                      ..++|.+.+.+... ...........+|.+.-....+.+.|........+........... .-+.+|..+.-.. .-.+
T Consensus       469 ~~~tt~~~~~~~s~-~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~~~s~a~~~~~~~~-~~~g  546 (1205)
T KOG0613|consen  469 TTVTTIKDGLPLSD-RSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLPAAKSSAPKPIHTQE-NQPG  546 (1205)
T ss_pred             eeEeeccCCccccc-ccccccccchhhheeeccCCCccchhhhhhhccCCCCCCcccccccccccCCcccccccc-cCCC
Confidence            45666666544321 1112222222355566666677777755444333332222111110 1111221111111 2334


Q ss_pred             eeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEE
Q psy11701        418 KAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF  497 (745)
Q Consensus       418 ~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~  497 (745)
                      ...+.|.+-+...... -.+|-+...    ....+..... ..+ ...++.++.++..|.+.+.+.+..|.+.++..-..
T Consensus       547 ~p~l~~~~~~~E~~~v-s~~~~~a~~----qlg~~~~~~~-r~g-tt~t~~~~~p~~~~~~t~~~k~~~gE~~ps~~~~t  619 (1205)
T KOG0613|consen  547 TPTLEWEPKPAEASKV-SLHYASATR----QLGVWRVPES-RPG-TTETIGSILPGHEYHVTIKAKNELGESRPSSKSTT  619 (1205)
T ss_pred             CcccccCCCccccccc-chhhhhhhh----hccCCccccc-CCC-cccccccccccccceeehhhhhcccccCCCCCCcc
Confidence            4556665532221110 111221111    1111111111 223 77888899999999999999999999988841111


Q ss_pred             eCCCCC---CCCCCceeEEEcCCceEEEEeeCCCCC-CCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCC
Q psy11701        498 VTPEGV---PGTVQSLEAIPLGSSAFYLKWVKPEQP-NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE  573 (745)
Q Consensus       498 ~t~~~~---P~~p~~~~~~~~~~~~i~l~W~~p~~~-~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  573 (745)
                      .-..++   +..|..-........+..++|..+... -.++..|...........-.....     ........++...-
T Consensus       620 ~k~~D~~q~~~~~~~~~~~ks~~~~~k~s~l~~l~k~~~~a~~~~~~~~~vd~~~K~kv~~-----~~~e~d~~i~~~~~  694 (1205)
T KOG0613|consen  620 LKWQDPSQLKRRPVSEPSYKSPDSSQKPSKLVGLSKMDLPANLESQVKPTVVSSPKKKVKK-----KKQEKDLEILAKKG  694 (1205)
T ss_pred             ccccccccccccccCCccccccccccchhcccchhhccccccceeeeeccccCCccccccc-----cccccchhhhccCC
Confidence            111111   111222222333456677889887532 234555666555444332111111     02233456777888


Q ss_pred             CCccEEEEEEEEecCCCCCC
Q psy11701        574 PSTKYRIHLAGYTKAGDGAE  593 (745)
Q Consensus       574 p~t~Y~~~V~a~n~~G~g~~  593 (745)
                      +.+.|.+.+.+.+..+....
T Consensus       695 t~si~~p~k~~e~~~~~~~~  714 (1205)
T KOG0613|consen  695 TTSIVEPEKPPESEAATPAE  714 (1205)
T ss_pred             CCcccccccCCccccCCccc
Confidence            88899999999888877554

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.56  E-value=0.0005  Score=53.78  Aligned_cols=66  Identities=26%  Similarity=0.508  Sum_probs=43.7

Q ss_pred             CCeEEEEEEEe-ecCCCeEEEEeCCEeccCCC------CCCceeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        140 EETVTFECKAS-GLPEPEIHWVHNGKPISQAP------PNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       140 G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      |+.+.|.|.+. ++|++.++|+.++..+....      .........+.|.+..-..++...++|.|.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            78999999885 58999999999998772100      01111112246777655556677899999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.56  E-value=0.00034  Score=55.94  Aligned_cols=69  Identities=26%  Similarity=0.379  Sum_probs=46.9

Q ss_pred             eEeeCCCeEEEEEEEee-cCCCeEEEEeCCEe-----cc-----CCCCCCceee------cCceEEEccCCCCCCEEEEE
Q psy11701        135 INAAEEETVTFECKASG-LPEPEIHWVHNGKP-----IS-----QAPPNPRRKV------GPNRITIENLRKSDTGNYGC  197 (745)
Q Consensus       135 ~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~-----~~-----~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C  197 (745)
                      ..+.+|++++|.|.... .....+.|+|....     +.     ......+...      ....|.|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            35789999999999865 34568899985321     10     0111222222      22479999999999999999


Q ss_pred             EEEeCC
Q psy11701        198 NATNSL  203 (745)
Q Consensus       198 ~~~~~~  203 (745)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            987653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.55  E-value=0.00078  Score=52.59  Aligned_cols=61  Identities=20%  Similarity=0.294  Sum_probs=40.3

Q ss_pred             ecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEEEEEEEEeC
Q psy11701         46 LRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        46 ~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      ..|+..+|.|.+.|+ |. ..++|.|||+++..+..   .....++     +.|.+.   .++...|+|.+...
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence            346778999999997 53 38899999999864321   1112222     245554   34555999999875

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.53  E-value=0.014  Score=56.75  Aligned_cols=193  Identities=17%  Similarity=0.256  Sum_probs=105.8

Q ss_pred             EEEEccCCCCCCEEEEEEEEeCCeeeE-EEEEEEEE-EecCeEEecCceeEeeCCCeEEEEEEEee-cCCC--eEEEEeC
Q psy11701         88 SLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSV-LAAPYFTVEPEFINAAEEETVTFECKASG-LPEP--EIHWVHN  162 (745)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~l~V-~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~--~v~W~~~  162 (745)
                      .|.|.++...|+|.|+....+...... .+.+.+.+ +.+|.+.+.+..  +..|+...-.|.+.. +|+-  .+.|+.|
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~SvrlrWf~n  285 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP--VLSGENYKASCIVRHFYPPGSVYVSWRQN  285 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            589999999999977666655443333 34444444 456667776654  679999999999977 4443  8999999


Q ss_pred             CEeccCCCCCCcee---ec------CceEEEccCCCCCCEEEEEEEEeCCc-eEEE-E--EEEEEeecCCeeeeCCCceE
Q psy11701        163 GKPISQAPPNPRRK---VG------PNRITIENLRKSDTGNYGCNATNSLG-YVYK-D--VYVNVLAHAPEITEAPKDEY  229 (745)
Q Consensus       163 g~~~~~~~~~~~~~---~~------~~~L~i~~v~~~d~G~Y~C~~~~~~g-~~~~-~--~~l~v~~~~p~~~~~~~~~~  229 (745)
                      |..+..........   .+      .++|.+.+...+..=..+|.+.-..+ .... +  +.-.|. .+|.+.     +.
T Consensus       286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY-~~P~IS-----v~  359 (490)
T PHA03271        286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVY-HHPRIS-----LA  359 (490)
T ss_pred             CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccc-cCCeEE-----EE
Confidence            99886443222221   11      12344433322233379999874333 2221 1  111122 234432     23


Q ss_pred             EecCce-EEEEEEEeecCCCeEEEeeCCEEccCceEE--E-----eecCcEEEcc-cCCCC---CEEEEEEEEe
Q psy11701        230 TVDGKT-VVLTCRVFGAPKPEVNWIHNQKELTGGRYT--I-----LETGDLKITD-VAFAD---SGEYTCFARN  291 (745)
Q Consensus       230 v~~g~~-~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~-----~~~~~l~i~~-~~~~d---~G~Y~C~~~n  291 (745)
                      ...|.- .+..|...   ...+.|..++...++....  +     ...+-..|.. ....|   .-.|+|++..
T Consensus       360 FedG~AVCtA~CVP~---gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~G  430 (490)
T PHA03271        360 FKDGYAICTIECVPS---GITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIG  430 (490)
T ss_pred             EeCCEEEEeccccCC---CcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEee
Confidence            334432 23445432   3589999877654332111  0     1123344444 23333   3589999863

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.51  E-value=0.00075  Score=52.89  Aligned_cols=77  Identities=19%  Similarity=0.321  Sum_probs=48.7

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGS  101 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~  101 (745)
                      +|..+.+.+..... .++.++|.|.+.|+ |.. +|+|+|||+. ..+..   .....++     +.|.+........-.
T Consensus         1 ~P~v~~l~~~~~~~-~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~   78 (95)
T cd04985           1 APTVFPLVPCCSSS-SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKES   78 (95)
T ss_pred             CCeEEEeCCCcccc-CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCc
Confidence            47777777777765 46679999999987 433 8899999998 32211   1111122     134444333223458


Q ss_pred             EEEEEEeCC
Q psy11701        102 YTCEVSNGV  110 (745)
Q Consensus       102 Y~C~~~~~~  110 (745)
                      |+|++....
T Consensus        79 ytC~V~H~~   87 (95)
T cd04985          79 FYCKVEHPS   87 (95)
T ss_pred             EEEEEEeCC
Confidence            999998753

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.49  E-value=0.00084  Score=52.39  Aligned_cols=63  Identities=17%  Similarity=0.365  Sum_probs=40.8

Q ss_pred             eCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCc-eeecC------ceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        138 AEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPR-RKVGP------NRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       138 ~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~-~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ..|+.++|.|.+.| +|. ..++|.+||+.+........ ....+      ..|.+.   .++...|+|++.+..
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~   84 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG   84 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence            34677899999999 554 48999999998764321111 11122      234443   345668999998764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd00096 Ig Immunoglobulin domain

Probab=97.47  E-value=0.00036  Score=51.76  Aligned_cols=60  Identities=35%  Similarity=0.656  Sum_probs=45.1

Q ss_pred             EEEEEEEeecCCCeeEEEECCEecCCCCCe------EeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         51 VELFCIFGGTPLPQTIWSKDGVPINPSDRI------SQGNYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        51 ~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~------~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      +.|.|.+.+.+...+.|++++.........      ........|.|.+++.+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            478999988777799999988776543321      111223479999999999999999998754

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.47  E-value=0.00021  Score=49.75  Aligned_cols=52  Identities=19%  Similarity=0.397  Sum_probs=37.4

Q ss_pred             EecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        45 v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      -.-|.+|+|+|...+.   .+.|.+|++.+..        .+..+.+.+.. +++|.|.|.+.+
T Consensus         4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g--------~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQG--------SDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EEeccEEEEECCCCCC---CceEEeCCccCCC--------CCceEEeeccC-CCCceEEEEeCC
Confidence            3469999999976522   3999999966652        22345555666 899999999953

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.46  E-value=0.0012  Score=50.30  Aligned_cols=79  Identities=30%  Similarity=0.452  Sum_probs=51.0

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCC-ceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG-SIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      +|.++.+.. ....++.+.|+++.....    .+|.+.|........ .+..... ......+.+.+|.+++.|.|+|.|
T Consensus         3 ~p~~~~~~~-~~~~~~~v~W~~~~~~~~----~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~Y~v~v~a   76 (83)
T smart00060        3 PPSNLRVTD-VTSTSVTLSWEPPPDDGI----TGYIVGYRVEYREEGSSWKEVNV-TPSSTSYTLTGLKPGTEYEFRVRA   76 (83)
T ss_pred             CCCcEEEEE-EeCCEEEEEECCCCCCCC----CccEEEEEEEEecCCCccEEEEe-cCCccEEEEeCcCCCCEEEEEEEE
Confidence            444566665 556699999996533221    567776654433221 2222333 223578999999999999999999


Q ss_pred             ecCCCC
Q psy11701        483 FNGAYN  488 (745)
Q Consensus       483 ~n~~G~  488 (745)
                      .+..|.
T Consensus        77 ~~~~g~   82 (83)
T smart00060       77 VNGAGE   82 (83)
T ss_pred             EcccCC
Confidence            987554

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.43  E-value=0.0017  Score=50.52  Aligned_cols=63  Identities=22%  Similarity=0.290  Sum_probs=41.1

Q ss_pred             EecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCCcEEEE---ccCCCCCCEEEEEEEEeC
Q psy11701         45 ALRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYGKSLII---KHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        45 v~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~~~L~i---~~~~~~d~G~Y~C~~~~~  109 (745)
                      +..|...+|.|.+.|+ |. ..++|+|||+++. +..   ... +.+.+..+   -.+...+...|.|.+...
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p-~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSF-SKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEE-CCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            4467888999999997 43 3889999999987 322   122 22222221   123456667899999874

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.41  E-value=0.00092  Score=55.53  Aligned_cols=72  Identities=15%  Similarity=0.199  Sum_probs=48.2

Q ss_pred             cCceeEeeCCCeEEEEEEEeecC------CCeEEEEeCCEe------cc--C------CCCCCceee------cCceEEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLP------EPEIHWVHNGKP------IS--Q------APPNPRRKV------GPNRITI  184 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p------~~~v~W~~~g~~------~~--~------~~~~~~~~~------~~~~L~i  184 (745)
                      .|....+.+|+.++|.|......      ...+.|++....      +.  .      .....++..      .+..|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            46677889999999999875321      246999985321      10  0      011123222      2347999


Q ss_pred             ccCCCCCCEEEEEEEEeC
Q psy11701        185 ENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~  202 (745)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.41  E-value=0.00031  Score=55.15  Aligned_cols=73  Identities=15%  Similarity=0.349  Sum_probs=43.7

Q ss_pred             EeeccceeEecCCcEEEEEEEeec--CCC-eeEEEECCEe-cCCCCCeEeccCCc------EEEEccCCCCCCEEEEEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT--PLP-QTIWSKDGVP-INPSDRISQGNYGK------SLIIKHVEFSDQGSYTCEV  106 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~--p~~-~v~W~~~~~~-i~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~~  106 (745)
                      +.+|....+..|+.++|.|.+.|+  |.. .|+|.||+.. +.........+.++      .|.+..-...+.-.|+|.|
T Consensus         3 ~~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V   82 (96)
T cd07696           3 LLPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKV   82 (96)
T ss_pred             ecCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEE
Confidence            345566667789999999999998  433 7899998743 32111111112222      3444332333334899999


Q ss_pred             EeC
Q psy11701        107 SNG  109 (745)
Q Consensus       107 ~~~  109 (745)
                      ...
T Consensus        83 ~H~   85 (96)
T cd07696          83 THP   85 (96)
T ss_pred             ECC
Confidence            865

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.38  E-value=0.00049  Score=54.05  Aligned_cols=73  Identities=15%  Similarity=0.296  Sum_probs=44.4

Q ss_pred             cCceeEeeCCCeEEEEEEEeec--CC-CeEEEEeCCEeccCCCCCCceeecCc------eEEEccCCCCCCEEEEEEEEe
Q psy11701        131 EPEFINAAEEETVTFECKASGL--PE-PEIHWVHNGKPISQAPPNPRRKVGPN------RITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~--p~-~~v~W~~~g~~~~~~~~~~~~~~~~~------~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      .|....+..|+.++|.|.+.|.  |. ..++|.|||...............++      .|.+.....++.-.|+|.|.+
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            3455556779999999999987  44 38999998743321111111222233      344444333445579999987


Q ss_pred             CC
Q psy11701        202 SL  203 (745)
Q Consensus       202 ~~  203 (745)
                      ..
T Consensus        85 ~~   86 (96)
T cd07696          85 PD   86 (96)
T ss_pred             CC
Confidence            64

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.36  E-value=0.00067  Score=54.12  Aligned_cols=68  Identities=21%  Similarity=0.426  Sum_probs=43.0

Q ss_pred             EeeCCCeEEEEEEEee-cCCC-eEEEEeCCEeccCCCCC--Cceee--cCc------eEEEccCCCCCCEEEEEEEEeCC
Q psy11701        136 NAAEEETVTFECKASG-LPEP-EIHWVHNGKPISQAPPN--PRRKV--GPN------RITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       136 ~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~~~--~~~~~--~~~------~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .+..|..++|.|.+.| +|.. .++|++||+.+......  .....  +++      .|.|..-...+...|+|.|.+..
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            3456789999999999 4443 78999999987643211  01111  122      45554433345667999998764

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=97.30  E-value=0.013  Score=55.53  Aligned_cols=162  Identities=12%  Similarity=0.041  Sum_probs=92.0

Q ss_pred             cCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEE-ccCceeEEEecccccCcceeEEEEEecCCCCCCCCc
Q psy11701        415 DAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV-NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE  493 (745)
Q Consensus       415 ~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~  493 (745)
                      -+..+.+.|.+.+    +-+...|.|+....+. .  ..+..+ ...-.-.+.-.+|.++..|.+.|.|.+..+.-..+.
T Consensus        82 ~~~~~~~~w~~~~----d~~~~~Y~i~~~~gD~-~--f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf  154 (343)
T COG3401          82 RPKSVKVFWSPHP----DVSVGKYIIQRQNGDG-K--FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSF  154 (343)
T ss_pred             CcceeeecccccC----CCCCCeEEEEEecCch-h--hhhhhHHHhccchhheecccccccceeeeEEeecccccceeee
Confidence            3456889999843    3345578886544333 2  211111 011122333447889999999999988766544443


Q ss_pred             ceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCC
Q psy11701        494 IISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE  573 (745)
Q Consensus       494 ~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  573 (745)
                      ...-.+....|..-.++++.....+.+.|+|+.+...+    .|+|+-...+....+-...     ...+.......+| 
T Consensus       155 ~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~~----yy~IY~~~~g~e~~~~ia~-----t~~n~y~d~~egl-  224 (343)
T COG3401         155 TGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAED----YYRIYASDSGNEEYGFIAQ-----TTENSYYDVKEGL-  224 (343)
T ss_pred             eeeecccccCCceeeeeeeecCCCCcceeeccCccccc----eEEEeccCCccccccceee-----ccccchhhhhhcc-
Confidence            22222344555555666677777889999999876432    6777655544433332221     1223233334444 


Q ss_pred             CCccEEEEEEEEecCCC-CCCc
Q psy11701        574 PSTKYRIHLAGYTKAGD-GAES  594 (745)
Q Consensus       574 p~t~Y~~~V~a~n~~G~-g~~S  594 (745)
                       |..|...|.+....|. +..+
T Consensus       225 -ga~~~y~VTtVd~~~~es~lp  245 (343)
T COG3401         225 -GAVEYYKVTTVDNTGFESDLP  245 (343)
T ss_pred             -CceeEEEEEEEcCCcceeccC
Confidence             6677777888775543 4443

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.29  E-value=0.00063  Score=54.82  Aligned_cols=66  Identities=18%  Similarity=0.373  Sum_probs=44.2

Q ss_pred             EeeCCCeEEEEEEEeecCCCeEEEEeCCE----e---c---cCC-C--------CCCceee----cCceEEEccCCCCCC
Q psy11701        136 NAAEEETVTFECKASGLPEPEIHWVHNGK----P---I---SQA-P--------PNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       136 ~v~~G~~~~l~C~~~~~p~~~v~W~~~g~----~---~---~~~-~--------~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      .+.+|++++|.|.........+.|+|...    .   +   ... .        ...++..    ....|.|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            36789999999998654445799998432    1   1   010 0        0112221    234699999999999


Q ss_pred             EEEEEEEEe
Q psy11701        193 GNYGCNATN  201 (745)
Q Consensus       193 G~Y~C~~~~  201 (745)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.29  E-value=0.0011  Score=51.80  Aligned_cols=70  Identities=11%  Similarity=0.281  Sum_probs=41.9

Q ss_pred             CceeEeeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCceeec------CceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        132 PEFINAAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRRKVG------PNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      |....+..+..++|.|.+.| +|. ..++|.+||+.+............      .+.|.|..-.  ....|+|.+.+..
T Consensus         8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697           8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            33334445678999999999 554 389999999987543221111111      1234443321  2345999998853

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.28  E-value=0.0015  Score=51.96  Aligned_cols=69  Identities=16%  Similarity=0.274  Sum_probs=47.4

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCC---CeeEEEE--CCEecC--------------CCCCeEec----cCCcEEEEcc
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPL---PQTIWSK--DGVPIN--------------PSDRISQG----NYGKSLIIKH   93 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~---~~v~W~~--~~~~i~--------------~~~~~~~~----~~~~~L~i~~   93 (745)
                      +.++....+..|..++|.|.+.|+-.   -.+.|.|  ++ .+.              ...++...    .+.-.|.|.+
T Consensus         2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~   80 (115)
T cd05721           2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQN   80 (115)
T ss_pred             eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcC
Confidence            34566677889999999999977643   3688988  33 210              12222221    1123799999


Q ss_pred             CCCCCCEEEEEEE
Q psy11701         94 VEFSDQGSYTCEV  106 (745)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (745)
                      ++.+|.+.|.|..
T Consensus        81 L~a~DTa~Y~Ca~   93 (115)
T cd05721          81 LRANQTDIYFCKI   93 (115)
T ss_pred             CCHHHCeEEEEEe
Confidence            9999999999987

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.26  E-value=0.0016  Score=52.82  Aligned_cols=76  Identities=17%  Similarity=0.332  Sum_probs=48.1

Q ss_pred             CceeEeeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCce--e------ecCceEEEccCCCCC-CEEEEEEEE
Q psy11701        132 PEFINAAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRR--K------VGPNRITIENLRKSD-TGNYGCNAT  200 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~--~------~~~~~L~i~~v~~~d-~G~Y~C~~~  200 (745)
                      |....+.+++.++|.|.+.| +|. ..++|++||+.+.........  .      ...+.|.|......+ ...|+|.+.
T Consensus        10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~   89 (115)
T cd05769          10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQ   89 (115)
T ss_pred             cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEE
Confidence            33344556788999999998 555 499999999987643221111  1      112345555544434 557999999


Q ss_pred             eCCceEE
Q psy11701        201 NSLGYVY  207 (745)
Q Consensus       201 ~~~g~~~  207 (745)
                      +......
T Consensus        90 H~g~~~~   96 (115)
T cd05769          90 FYGGTDT   96 (115)
T ss_pred             EeCCccc
Confidence            8755443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>KOG4152|consensus

Probab=97.25  E-value=0.0016  Score=64.50  Aligned_cols=124  Identities=19%  Similarity=0.277  Sum_probs=79.1

Q ss_pred             cccccCcceeEEEEEecCCCCCCCCcceEEeCC-CCCCCCCCceeEEEcCCceEEEEeeCCCCC-CCceeeEEEEEEEcC
Q psy11701        468 DKFVPASKNFARVLAFNGAYNGPPSEIISFVTP-EGVPGTVQSLEAIPLGSSAFYLKWVKPEQP-NGVLMGYKIKYQSVK  545 (745)
Q Consensus       468 ~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~-~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~-~g~i~~Y~v~~~~~~  545 (745)
                      ..|.++..|.|+|.|.|..|.|++|....+.|. ++.|++|..++... +...|.|.|.+|..+ .|.|..|..+.--..
T Consensus       652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k-~~eGi~l~weppt~p~sg~Iieys~ylAi~t  730 (830)
T KOG4152|consen  652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKK-TIEGISLVWEPPTKPGSGTIIEYSPYLAIIT  730 (830)
T ss_pred             cccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccc-cccceeecccCCCCCCCcceEEeehhhHhhh
Confidence            468899999999999999999999998888774 45666666665444 556799999999875 457777766543211


Q ss_pred             C---cccCCcccccc--------cccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701        546 G---TKVGPLLERLP--------YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE  593 (745)
Q Consensus       546 ~---~~~~~~~~~~~--------~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~  593 (745)
                      .   ....+..-...        .+..+. .-.-+.+...+-.--|||.|.|..|.|+.
T Consensus       731 q~~~~~~sql~fmr~ycg~~t~c~vt~g~-l~tA~~d~t~~paivfri~aknekGyGpa  788 (830)
T KOG4152|consen  731 QAGATGVSQLPFMRSYCGIITTCVVTSGK-LITAVPDITTGPAIVFRIVAKNEKGYGPA  788 (830)
T ss_pred             hhhccCccccceeeeecccceeeEEeccc-ceeeccccccCcceEEEEEecCCCCCCcc
Confidence            1   11111000000        000110 11112233445567899999999999987

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.22  E-value=0.00099  Score=54.13  Aligned_cols=65  Identities=22%  Similarity=0.468  Sum_probs=43.4

Q ss_pred             EeeCCCeEEEEEEEeec-CCCeEEEEeCCEe---------c--cC--------CCCCCceee---c---CceEEEccCCC
Q psy11701        136 NAAEEETVTFECKASGL-PEPEIHWVHNGKP---------I--SQ--------APPNPRRKV---G---PNRITIENLRK  189 (745)
Q Consensus       136 ~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~---------~--~~--------~~~~~~~~~---~---~~~L~i~~v~~  189 (745)
                      .+.+|++++|.|...+. ....+.||+....         +  ..        .....++..   .   ...|+|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            57899999999998763 3348999984221         0  00        000122221   1   23699999999


Q ss_pred             CCCEEEEEEEE
Q psy11701        190 SDTGNYGCNAT  200 (745)
Q Consensus       190 ~d~G~Y~C~~~  200 (745)
                      +|+|.|.|...
T Consensus        82 ~Dsg~YyCa~~   92 (107)
T cd07700          82 EDSGTYFCMTV   92 (107)
T ss_pred             HHCEEEEEeEc
Confidence            99999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.22  E-value=0.00082  Score=52.53  Aligned_cols=78  Identities=17%  Similarity=0.246  Sum_probs=49.0

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecC---CCeeEEEECCEecCCCC-CeEeccCC-----cEEEEccCCCCCCEEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTP---LPQTIWSKDGVPINPSD-RISQGNYG-----KSLIIKHVEFSDQGSY  102 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p---~~~v~W~~~~~~i~~~~-~~~~~~~~-----~~L~i~~~~~~d~G~Y  102 (745)
                      +|...+.+|....+..+..++|+|.+.|+-   ...|.|.+||.. .... ....+.++     +.|.|..-.......|
T Consensus         3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~y   81 (99)
T cd04986           3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPF   81 (99)
T ss_pred             CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence            477777777777777899999999998864   238999999875 2111 11111122     2455542222333479


Q ss_pred             EEEEEeCC
Q psy11701        103 TCEVSNGV  110 (745)
Q Consensus       103 ~C~~~~~~  110 (745)
                      +|+|.+..
T Consensus        82 tC~V~H~~   89 (99)
T cd04986          82 ACTVTHPE   89 (99)
T ss_pred             EEEEECCC
Confidence            99998653

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.22  E-value=0.0011  Score=51.77  Aligned_cols=63  Identities=30%  Similarity=0.519  Sum_probs=40.5

Q ss_pred             CCcEEEEEEE-eecCCCeeEEEECCEecCCCCC-eE-eccCC-----cEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         48 NKKVELFCIF-GGTPLPQTIWSKDGVPINPSDR-IS-QGNYG-----KSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        48 G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~-~~-~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      |+.+.|+|.+ .|+|++.++|+.++..+..... .. ....+     +.|.+..-..++...++|.|.+..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~   84 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA   84 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence            7899999988 6779999999999988721111 11 11111     256665433344558999998864

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.21  E-value=0.0015  Score=53.96  Aligned_cols=71  Identities=24%  Similarity=0.379  Sum_probs=47.5

Q ss_pred             cCceeEeeCCCeEEEEEEEeecC--CCeEEEEeC--CE-e--c---c--------CCCCCCceee---c-C--ceEEEcc
Q psy11701        131 EPEFINAAEEETVTFECKASGLP--EPEIHWVHN--GK-P--I---S--------QAPPNPRRKV---G-P--NRITIEN  186 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--g~-~--~---~--------~~~~~~~~~~---~-~--~~L~i~~  186 (745)
                      +|....+.+|++++|.|...+..  ...+.|||-  |+ +  +   .        ......++..   . .  ..|.|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            46667889999999999886532  457999983  21 1  1   0        0011123322   1 1  2699999


Q ss_pred             CCCCCCEEEEEEEEe
Q psy11701        187 LRKSDTGNYGCNATN  201 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~  201 (745)
                      +..+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.16  E-value=0.0018  Score=49.81  Aligned_cols=64  Identities=13%  Similarity=0.134  Sum_probs=43.5

Q ss_pred             EecCCcEEEEEEEee-cCC--CeeEEEECCEecCCCCCeE------eccCCcEEEEccCCCCCCE-EEEEEEEeC
Q psy11701         45 ALRNKKVELFCIFGG-TPL--PQTIWSKDGVPINPSDRIS------QGNYGKSLIIKHVEFSDQG-SYTCEVSNG  109 (745)
Q Consensus        45 v~~G~~~~l~C~~~g-~p~--~~v~W~~~~~~i~~~~~~~------~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~  109 (745)
                      +.+|..++|.|.+.+ .|.  .++.|+|.+..+....-..      .......++|.. +.+|.| .|+|+|.-.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence            579999999999954 454  5899999777766432111      112234566644 588888 899999743

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.15  E-value=0.0034  Score=49.21  Aligned_cols=64  Identities=19%  Similarity=0.401  Sum_probs=39.8

Q ss_pred             CCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCC-CCCceeecC------ceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        139 EEETVTFECKASG-LPE-PEIHWVHNGKPISQAP-PNPRRKVGP------NRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       139 ~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~-~~~~~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .++.++|.|.+.| +|. ..++|+|||+. .... ........+      +.|.+..........|+|++.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            5677999999999 454 48999999997 3221 111111112      244544433333567999999864

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.12  E-value=0.0014  Score=50.19  Aligned_cols=57  Identities=25%  Similarity=0.470  Sum_probs=37.9

Q ss_pred             cEEEEEEEeecCCC--eeEEEECCE--e---cC-------------CCCCeEecc----CCcEEEEccCCCCCCEEEEEE
Q psy11701         50 KVELFCIFGGTPLP--QTIWSKDGV--P---IN-------------PSDRISQGN----YGKSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        50 ~~~l~C~~~g~p~~--~v~W~~~~~--~---i~-------------~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~  105 (745)
                      +++|.|.......+  .+.|++...  .   |.             ...|+.+..    ...+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899998655443  789988431  1   10             123444322    224799999999999999997


Q ss_pred             E
Q psy11701        106 V  106 (745)
Q Consensus       106 ~  106 (745)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            4

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.06  E-value=0.0019  Score=45.34  Aligned_cols=50  Identities=26%  Similarity=0.346  Sum_probs=37.4

Q ss_pred             cCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         47 RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        47 ~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      ..+.|.|+|..    ..+|.|++ |..+....       ..+|.+-+...+-.|.|.|.+.+
T Consensus         5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~-------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKK-GKEILEVS-------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC----CCcEEEec-Cccccccc-------ccEEeccCcccCCCcceEecCcc
Confidence            35689999965    24699999 55554221       45688888888999999999865

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.03  E-value=0.0025  Score=48.92  Aligned_cols=63  Identities=22%  Similarity=0.465  Sum_probs=43.4

Q ss_pred             CCCeEEEEEEEee-cCCC-eEEEEeCCEeccCCCCCCcee-ecCc------eEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        139 EEETVTFECKASG-LPEP-EIHWVHNGKPISQAPPNPRRK-VGPN------RITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       139 ~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~~~~~~~-~~~~------~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      .++.++|.|.+.+ +|.. .|+|+++|+.+.......... ..++      .|.+.   ..+...|+|.+.+...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            4899999999998 5544 899999999886443222222 2233      34444   5666689999987653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>KOG4367|consensus

Probab=97.03  E-value=0.00053  Score=65.86  Aligned_cols=77  Identities=19%  Similarity=0.294  Sum_probs=62.9

Q ss_pred             EcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701        514 PLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE  593 (745)
Q Consensus       514 ~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~  593 (745)
                      ....++++|+|..|...+.++.||.++.-..++.+..+..       .+..+-.++++|--++.|.-||.|+|..|.++.
T Consensus       449 ~t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy-------~g~etmctvdglhfns~y~arvka~n~tg~s~y  521 (699)
T KOG4367|consen  449 CTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVY-------VGKETMCTVDGLHFNSTYNARVKAFNKTGVSPY  521 (699)
T ss_pred             hccCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEE-------ecCceeEEecceecchhHHHHHHHhhccCCCcc
Confidence            3467899999997776677999999998766544433322       456688999999999999999999999999999


Q ss_pred             ccee
Q psy11701        594 SKYL  597 (745)
Q Consensus       594 S~~~  597 (745)
                      |+.+
T Consensus       522 s~tl  525 (699)
T KOG4367|consen  522 SKTL  525 (699)
T ss_pred             ccee
Confidence            9776

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.00  E-value=0.0022  Score=49.15  Aligned_cols=61  Identities=23%  Similarity=0.510  Sum_probs=42.1

Q ss_pred             cCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCCeE---eccCC-----cEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         47 RNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDRIS---QGNYG-----KSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        47 ~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~~~---~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      .++.++|.|.+.|+ |.. +|.|+++|+.+.......   ...++     +.|.+.   ..+...|+|.|.+..
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence            38999999999887 544 799999999987543321   11222     245555   555558999998753

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.00  E-value=0.0035  Score=48.71  Aligned_cols=71  Identities=15%  Similarity=0.218  Sum_probs=44.2

Q ss_pred             eeccceeEecCCcEEE-EEEE-eecCCCeeEEEECCEecCCCCCeEeccCC-----cEEEEccCCCCCCEEEEEEEEeC
Q psy11701         38 VTRKKEVALRNKKVEL-FCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYG-----KSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l-~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .......+.+|+.+.| .|.+ .|.|+++|.|+.+..... ........++     +.|.+.....+|.-.++|.+.+.
T Consensus         6 ~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~   83 (97)
T cd07704           6 SPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP   83 (97)
T ss_pred             CCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence            3445566889999999 9998 778999999998633322 1111112222     13455333334444899999875

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.98  E-value=0.002  Score=50.43  Aligned_cols=70  Identities=16%  Similarity=0.259  Sum_probs=43.6

Q ss_pred             CceeEeeCCCeEEEEEEEee-c-CC-CeEEEEeCCEeccCCCCCCceeecCc------eEEEccCCCCCCEEEEEEEEeC
Q psy11701        132 PEFINAAEEETVTFECKASG-L-PE-PEIHWVHNGKPISQAPPNPRRKVGPN------RITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~-~-p~-~~v~W~~~g~~~~~~~~~~~~~~~~~------~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      |....+..+..++|.|.+.+ . |. ..|+|.++|.. . ..........++      .|.+..-.......|+|.|.+.
T Consensus        11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~   88 (99)
T cd04986          11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-AVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP   88 (99)
T ss_pred             cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C-cEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence            44445667899999999998 3 43 48999999875 2 111111222233      4444433334455799999876


Q ss_pred             C
Q psy11701        203 L  203 (745)
Q Consensus       203 ~  203 (745)
                      .
T Consensus        89 ~   89 (99)
T cd04986          89 E   89 (99)
T ss_pred             C
Confidence            4

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.93  E-value=0.45  Score=46.38  Aligned_cols=298  Identities=16%  Similarity=0.214  Sum_probs=151.3

Q ss_pred             ceeEecCCcE-EEEEEEeecC-CCeeEEEECCEe---------cCCCCC--eE-eccCC--cEEEEccCCCCCCEEEEEE
Q psy11701         42 KEVALRNKKV-ELFCIFGGTP-LPQTIWSKDGVP---------INPSDR--IS-QGNYG--KSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        42 ~~~v~~G~~~-~l~C~~~g~p-~~~v~W~~~~~~---------i~~~~~--~~-~~~~~--~~L~i~~~~~~d~G~Y~C~  105 (745)
                      ...++.|+.+ .|+|...... +-++...|.+..         |.+...  .. -++..  -++.+.+++.+|.|.|+|.
T Consensus        20 nIi~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYrCI   99 (500)
T PHA02914         20 NIFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFKCI   99 (500)
T ss_pred             eEEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEEEE
Confidence            5567788777 9999984433 336777763221         111100  00 00001  2578889999999999999


Q ss_pred             EEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCe-EEEEEEEee---cCCCeEEEEeCCEeccCCCCCCceeecCce
Q psy11701        106 VSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEET-VTFECKASG---LPEPEIHWVHNGKPISQAPPNPRRKVGPNR  181 (745)
Q Consensus       106 ~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~-~~l~C~~~~---~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~  181 (745)
                      ......+.....+.|.|  .|.+...-    ...|+. ..+-|..+.   ...+.+.-.-+|..+..............+
T Consensus       100 FYLn~~EtyrH~I~vrV--mPKId~t~----~~~~dk~~~y~CNrtrtm~dd~vKv~~iaGGV~v~~~~~g~~~fnsd~s  173 (500)
T PHA02914        100 FYLGDNESHKHEILVRK--APKIDTTF----LEFNDKHTCICCKIDKPMNQDALKVFFVAGGVNVDGNFLGKKDFNNDPS  173 (500)
T ss_pred             EEeCCceeEEEEEEEEE--ccceeeee----eecCCCcEEEEEecCcccccCceeEEEEeccEEEcCeeeccccccCCCc
Confidence            98765555555555554  55543221    223333 334466543   122344444455555532211111111111


Q ss_pred             E-E---EccCCCC-CCEEEEEEEEeCCceEEEE--------EE----------EEEee--------------------cC
Q psy11701        182 I-T---IENLRKS-DTGNYGCNATNSLGYVYKD--------VY----------VNVLA--------------------HA  218 (745)
Q Consensus       182 L-~---i~~v~~~-d~G~Y~C~~~~~~g~~~~~--------~~----------l~v~~--------------------~~  218 (745)
                      . .   ..+-... -+-.-.|-++......+..        +.          ..|..                    ..
T Consensus       174 ~~~v~~~Adksy~D~Trev~C~VSY~G~~~e~~iSy~~~~~vn~s~i~~~~~p~n~~~~~~~~~~~~~~s~~~~~~ee~~  253 (500)
T PHA02914        174 NRTVKLCADKSHDDTAREALCGVEYFGALKELNISYDGTNAVNISEILSKVCPENVINSKVCGDNGSKDSELLEDEEEED  253 (500)
T ss_pred             eeEEEEecCCCCccchhheEEEEEEccceeEEEeeecCccceeHHHhhhhcCCcccccccccccCCcccchhhcchhhcC
Confidence            1 1   1121112 2334666665332111110        00          00000                    00


Q ss_pred             --------Cee--eeCC-CceEEecCceEEEEEEEee--c-CCCeEEEeeCCEEcc------------------CceEEE
Q psy11701        219 --------PEI--TEAP-KDEYTVDGKTVVLTCRVFG--A-PKPEVNWIHNQKELT------------------GGRYTI  266 (745)
Q Consensus       219 --------p~~--~~~~-~~~~v~~g~~~~l~C~~~~--~-p~~~i~W~~~~~~~~------------------~~~~~~  266 (745)
                              ..+  ...+ ....+..|..+.|.|...-  + .-..+.|+.-+-++.                  ...+.+
T Consensus       254 ~y~~~~~~~~v~y~kk~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i  333 (500)
T PHA02914        254 DYEESGDYSEVTYDKKKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMI  333 (500)
T ss_pred             ChhhcCCcceEEecccccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEE
Confidence                    011  1122 2234566999999999753  2 234688986543221                  112222


Q ss_pred             ---------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecCCC
Q psy11701        267 ---------LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSL  337 (745)
Q Consensus       267 ---------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~  337 (745)
                               +..++|+|.++....+|-|.|+|....-......-|.|.....+.     ..........+.|.+......
T Consensus       334 ~~~~~~s~dlk~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~-----W~~e~~n~T~V~Cyv~sy~~k  408 (500)
T PHA02914        334 SAHANYSDDLKNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFK-----WNTEGDNETKVACYAAQYDMQ  408 (500)
T ss_pred             EEecccccchhhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEEEEE-----EEeccCceEEEEEEEEecccC
Confidence                     223479999999999999999998764444444445554322111     001113345678988776554


Q ss_pred             CcEEEEeeCCeec
Q psy11701        338 KLSIVWLRGSEPI  350 (745)
Q Consensus       338 ~~~i~W~~~~~~~  350 (745)
                      .+.+.|.-+|...
T Consensus       409 p~si~wkvnGV~~  421 (500)
T PHA02914        409 PFSILWKSNGVSF  421 (500)
T ss_pred             CceeEEEEccEEe
Confidence            5889999887654

>KOG1480|consensus

Probab=96.90  E-value=0.00051  Score=71.54  Aligned_cols=90  Identities=28%  Similarity=0.440  Sum_probs=70.1

Q ss_pred             CeeEeeccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      +.+...|....|.+++.+.|.|.. .+.|...+.|+|++..+.+...+.. .....|.+..+...|.|+|+|+|.+-.+.
T Consensus       130 k~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~-~~d~~li~~~arlsd~~nytc~a~ni~~~  208 (909)
T KOG1480|consen  130 KHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR-ASDHNLIISQARLSDSGNYTCEATNIVAK  208 (909)
T ss_pred             HhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchh-hhcCCccccchhhhhcccceeeeehhhcc
Confidence            346677888899999999999998 7778889999999988887433332 33456999999999999999999987766


Q ss_pred             eEEEEEEEEEEe
Q psy11701        113 AKSYSIDLSVLA  124 (745)
Q Consensus       113 ~~~~~~~l~V~~  124 (745)
                      ..+-.+.+.|..
T Consensus       209 r~~~~~~v~vyv  220 (909)
T KOG1480|consen  209 RKSDPATVQVYV  220 (909)
T ss_pred             ccccceEEEEEE
Confidence            665555555543

>KOG4228|consensus

Probab=96.83  E-value=0.0058  Score=67.36  Aligned_cols=252  Identities=17%  Similarity=0.094  Sum_probs=149.7

Q ss_pred             EEEEEEEeCCceEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEE
Q psy11701        378 QYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV  457 (745)
Q Consensus       378 ~y~c~a~n~~g~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~  457 (745)
                      .|+|.+....|-......+.+..-|..|..+.+.. ....++.+.|..++. .    ...|.+.++....+   ...+. 
T Consensus         1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~-~~~~~~~~~~~~~~t-~----~~~y~v~~~~~~s~---~~~~~-   70 (1087)
T KOG4228|consen    1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTG-STATSWVQAELLGST-W----PNYYQVIFKALSSG---YGYID-   70 (1087)
T ss_pred             CeeeeecccCCCccceEEEEecCCCCCCCCccccc-ccccceeehhhccCC-C----hhhhheeeeEeccC---cceee-
Confidence            38999998888888888888876666665666655 677888888988654 2    33466655554443   11111 


Q ss_pred             ccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCC-CCCceeEEEcCCceEEEEeeCCCCCCCceee
Q psy11701        458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMG  536 (745)
Q Consensus       458 ~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~  536 (745)
                       ......+....+.+...+.+  .+.|..|.+..+.+..-++.+..+. .+....+.........++|..+....+    
T Consensus        71 -~~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----  143 (1087)
T KOG4228|consen   71 -VDLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATVG----  143 (1087)
T ss_pred             -ccceeecccCCCCCcchhhh--hhcccccccccccccCCccccccccccccchhhhhhhhhhhccCccccccccc----
Confidence             22333466677778888877  8889999998888777766655443 344444444455556666665432111    


Q ss_pred             EEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCc
Q psy11701        537 YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPN  616 (745)
Q Consensus       537 Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~  616 (745)
                                                                   +.+.+..|.++++..+...+....+..+.....-.
T Consensus       144 ---------------------------------------------~~~~~~~~~~~~~t~i~i~~~~~~p~~~~~~~~~~  178 (1087)
T KOG4228|consen  144 ---------------------------------------------PLAIASPGLGPPSTYIQITTNANSPIQPGEEEEYT  178 (1087)
T ss_pred             ---------------------------------------------ccccCCcccCCCCceEEEeccCCCCCCCCcceEEE
Confidence                                                         45555556666543333332222222222334456


Q ss_pred             ceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEE
Q psy11701        617 NLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIV  696 (745)
Q Consensus       617 ~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~  696 (745)
                      +++++|.++....    +..|.+-...+                          .+.|.+++.                 
T Consensus       179 ~it~~w~~~~~~~----~~~ykl~~~~~--------------------------d~~~~~~v~-----------------  211 (1087)
T KOG4228|consen  179 TITGSWSPPHAVS----LDTYKLLHLDP--------------------------DTGYEISVT-----------------  211 (1087)
T ss_pred             EEEecCCCCCccc----chhhhhhhcCC--------------------------cccceeeee-----------------
Confidence            7788887655432    35666543322                          233444332                 


Q ss_pred             ecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCC
Q psy11701        697 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP  739 (745)
Q Consensus       697 ~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~  739 (745)
                       ..........+|.|...|.++..+....+.+.....+.+++-
T Consensus       212 -~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~  253 (1087)
T KOG4228|consen  212 -LTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQL  253 (1087)
T ss_pred             -ccCCCCCcccCCCCcccccccccCccccccCCCCcceEEEeh
Confidence             122333444578888888888888888877777666666653

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.80  E-value=0.0023  Score=44.70  Aligned_cols=52  Identities=31%  Similarity=0.496  Sum_probs=36.0

Q ss_pred             eCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        138 AEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       138 ~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      ..|.+|+|+|....   ..+.|++|+..+...         ...+.+.+-. ++.|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~---~~i~W~~n~~~~~g~---------~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQGS---------DEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCC---CCceEEeCCccCCCC---------CceEEeeccC-CCCceEEEEeCCC
Confidence            46999999995442   239999999666531         2244444545 8899999999643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=96.77  E-value=0.56  Score=45.06  Aligned_cols=130  Identities=12%  Similarity=0.160  Sum_probs=81.1

Q ss_pred             CceeEEEecccccCcceeEEEEEecCCCCCCCCcceE-EeCCC---CCCCCCCceeEEE----cCCceEEEEeeCCCCCC
Q psy11701        460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIIS-FVTPE---GVPGTVQSLEAIP----LGSSAFYLKWVKPEQPN  531 (745)
Q Consensus       460 ~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~-~~t~~---~~P~~p~~~~~~~----~~~~~i~l~W~~p~~~~  531 (745)
                      .+-..+.+.++.++..|.+++.+.|... +..+.-+. .+|.+   .-|.-|.+..+..    .+-++++|.|.+..+..
T Consensus       125 ~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~  203 (300)
T PF10179_consen  125 EGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS  203 (300)
T ss_pred             cceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCCC
Confidence            3556788999999999999998877543 33333333 33332   2345566666643    35689999999765532


Q ss_pred             CceeeEEEEEEEcCCc--------ccCCc--------c----cccccc------cCCCcceeeecCCCCCccEEEEEEEE
Q psy11701        532 GVLMGYKIKYQSVKGT--------KVGPL--------L----ERLPYI------SDPTTTSAKLAGLEPSTKYRIHLAGY  585 (745)
Q Consensus       532 g~i~~Y~v~~~~~~~~--------~~~~~--------~----~~~~~~------~~~~~~~~~l~~L~p~t~Y~~~V~a~  585 (745)
                         ..|-|..+.....        .....        .    ...++-      ........+|.+|+||+.|-|.|++.
T Consensus       204 ---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~  280 (300)
T PF10179_consen  204 ---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVN  280 (300)
T ss_pred             ---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEe
Confidence               5688877755443        00000        0    000010      01223456899999999999999998


Q ss_pred             ecCCCCCC
Q psy11701        586 TKAGDGAE  593 (745)
Q Consensus       586 n~~G~g~~  593 (745)
                      -..|.+-+
T Consensus       281 ~~~G~sl~  288 (300)
T PF10179_consen  281 GPSGQSLP  288 (300)
T ss_pred             cCCCceee
Confidence            77776655

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=96.74  E-value=1.1  Score=48.18  Aligned_cols=275  Identities=17%  Similarity=0.172  Sum_probs=160.0

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEE--eCCee---eEEE
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS--NGVGE---AKSY  116 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~--~~~g~---~~~~  116 (745)
                      +..+..|+.+.|.+.+.|.-...+.+.-+|..+...+. .  . ...+   +.+++.+|.|.-.+.  +....   ....
T Consensus       299 ~s~ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~Y-~--~-~n~~---~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~  371 (667)
T PRK14081        299 SSPQLTDTDIELKAVAEGGKELLYRFIIKGKESEDSGY-I--R-NNIY---TWKPKIAGKYSITLWVKDISSKGEYEDKS  371 (667)
T ss_pred             CCCeecCceEEEEEEecCCCceEEEEEECCcEEeeccc-c--c-cceE---EEeeCCCceEEEEEEEEcCcCcccccceE
Confidence            44567899999999998876555665445544431111 1  0 1123   334567899988775  22111   1125


Q ss_pred             EEEEEEEec---Ce-E--EecCceeEeeCCCeEEEEEEEeecCCC--eEEEEeCCEeccCCCCCCceeecCceEEEccCC
Q psy11701        117 SIDLSVLAA---PY-F--TVEPEFINAAEEETVTFECKASGLPEP--EIHWVHNGKPISQAPPNPRRKVGPNRITIENLR  188 (745)
Q Consensus       117 ~~~l~V~~~---p~-~--~~~~~~~~v~~G~~~~l~C~~~~~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~  188 (745)
                      .+...+...   |. +  ...+....+..|+++.|.|.+.|.-..  .+.-.++|..+.....     ..+..+.+   .
T Consensus       372 ~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y-----~~~~~~~f---~  443 (667)
T PRK14081        372 SIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDY-----GKNNWVNF---I  443 (667)
T ss_pred             EEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeec-----ccccEEEE---E
Confidence            566666653   42 2  122334567789999999999875444  3444558877653211     12334444   4


Q ss_pred             CCCCEEEEEEEEeCCce------EEEEEEEEEeecCCe-ee--eCCCceEEecCceEEEEEEEeecCCCeEE--EeeCCE
Q psy11701        189 KSDTGNYGCNATNSLGY------VYKDVYVNVLAHAPE-IT--EAPKDEYTVDGKTVVLTCRVFGAPKPEVN--WIHNQK  257 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~------~~~~~~l~v~~~~p~-~~--~~~~~~~v~~g~~~~l~C~~~~~p~~~i~--W~~~~~  257 (745)
                      +.-+|.|+..+.-...-      ....+.+.|....|. +.  +.+.......|+.+++.|.+++.....+.  -..+|.
T Consensus       444 P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~  523 (667)
T PRK14081        444 PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGH  523 (667)
T ss_pred             ECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCE
Confidence            47899999988743322      234577888765564 43  33555567789999999999886544333  334555


Q ss_pred             EccCceEEEeecCcEEEcccCCCCCEEEEEEEEeC--Cce----EEEEEEEEEeecceeecC---CCcEEEecCCeEEEE
Q psy11701        258 ELTGGRYTILETGDLKITDVAFADSGEYTCFARNK--LGT----AQGSGSLTVKEHTHITDQ---PEDYEVEAGQSATFR  328 (745)
Q Consensus       258 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~--~g~----~~~~~~l~v~~~p~~~~~---p~~~~~~~g~~~~l~  328 (745)
                      ......+.  ....+.+.   +..+|.|+..+...  ...    ....+.+.|..+..+...   ........++.+++.
T Consensus       524 ~v~~t~Ys--~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~  598 (667)
T PRK14081        524 KVEETDYI--KNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFS  598 (667)
T ss_pred             EEEEeecc--ccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEE
Confidence            44322221  12234443   45689998876532  221    245667777765433322   234456678888888


Q ss_pred             EEEEecCC
Q psy11701        329 CNAVSDPS  336 (745)
Q Consensus       329 C~~~~~~~  336 (745)
                      ....|...
T Consensus       599 ~~~~gg~~  606 (667)
T PRK14081        599 VKSEGGKD  606 (667)
T ss_pred             EEccCCCc
Confidence            87776654

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.74  E-value=0.0043  Score=43.61  Aligned_cols=50  Identities=22%  Similarity=0.537  Sum_probs=37.7

Q ss_pred             CCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEe
Q psy11701        139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       139 ~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      ..+.+.|.|..    ..+|.|++ |..+...        .+.+|.+-+...+-.|.|+|.+++
T Consensus         5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~--------~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKK-GKEILEV--------SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC----CCcEEEec-Ccccccc--------cccEEeccCcccCCCcceEecCcc
Confidence            35689999965    24699999 5544311        156888889999999999998876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>KOG0613|consensus

Probab=96.71  E-value=0.0052  Score=68.77  Aligned_cols=202  Identities=15%  Similarity=0.093  Sum_probs=122.4

Q ss_pred             cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEe----------------cCeE---EecCceeEeeCCCeEEEEE
Q psy11701         87 KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA----------------APYF---TVEPEFINAAEEETVTFEC  147 (745)
Q Consensus        87 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~----------------~p~~---~~~~~~~~v~~G~~~~l~C  147 (745)
                      .++.|.+....+.+.|+|...+..+..... +...+..                +|..   ...........+..+++.|
T Consensus       278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~-v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~  356 (1205)
T KOG0613|consen  278 NTKTIQNDGPEPELSWTVADKRQGCQDRFK-VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPT  356 (1205)
T ss_pred             ccccccccCCccccceeeecccCCccccee-eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecc
Confidence            367777778888889999887766554422 2211111                1111   1112334456778899999


Q ss_pred             EEeecCCC-eEEEEeCCEeccCCCC---CCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecC----C
Q psy11701        148 KASGLPEP-EIHWVHNGKPISQAPP---NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA----P  219 (745)
Q Consensus       148 ~~~~~p~~-~v~W~~~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~----p  219 (745)
                      ...+...+ .+.|++++.....+..   ..........+.|..+...+.+.|.|.|.|..|.........+....    +
T Consensus       357 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~  436 (1205)
T KOG0613|consen  357 ALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQP  436 (1205)
T ss_pred             cccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCC
Confidence            99988777 4999998766553331   12233345688899999999999999999998876554433333211    2


Q ss_pred             eeeeCCCceEEecC--ceEEEEEEEeecCCC--eEEEeeCCEEccCceEEEeec--CcEEEcccCCCCCEEEEEEE
Q psy11701        220 EITEAPKDEYTVDG--KTVVLTCRVFGAPKP--EVNWIHNQKELTGGRYTILET--GDLKITDVAFADSGEYTCFA  289 (745)
Q Consensus       220 ~~~~~~~~~~v~~g--~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~  289 (745)
                      .............+  +.+.+.|...+.+.+  .++|++++.........+..+  .+|.+.-....+.+.|.-..
T Consensus       437 ~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~  512 (1205)
T KOG0613|consen  437 PKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRAL  512 (1205)
T ss_pred             ccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhhh
Confidence            22222333333444  788999998777644  456666655444332222222  24666666677787774433

>smart00406 IGv Immunoglobulin V-Type

Probab=96.65  E-value=0.004  Score=47.57  Aligned_cols=58  Identities=36%  Similarity=0.563  Sum_probs=36.8

Q ss_pred             eEEEEEEEeecCC--CeEEEEeCCE-----ecc----------CCCCCCceee------cCceEEEccCCCCCCEEEEEE
Q psy11701        142 TVTFECKASGLPE--PEIHWVHNGK-----PIS----------QAPPNPRRKV------GPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       142 ~~~l~C~~~~~p~--~~v~W~~~g~-----~~~----------~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      +++|.|.......  ..+.|++...     .+.          ......++..      ....|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4789999876443  3789998431     111          0011222221      224799999999999999996


Q ss_pred             E
Q psy11701        199 A  199 (745)
Q Consensus       199 ~  199 (745)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            4

>KOG3632|consensus

Probab=96.61  E-value=0.023  Score=61.25  Aligned_cols=158  Identities=15%  Similarity=0.166  Sum_probs=102.7

Q ss_pred             CCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccc-cCcceeEEEEEec
Q psy11701        406 SNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFV-PASKNFARVLAFN  484 (745)
Q Consensus       406 ~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~-~~~~Y~~~V~a~n  484 (745)
                      ....+.. ....++.|.|+++.....-++...|.+..-..-.     ..+.  .+......+..|. ....|.+.|.+..
T Consensus       582 r~~~~vk-qla~sv~vawepps~pP~~~~~~~~~~~v~~elr-----q~l~--~gs~tka~~E~ld~~a~s~~isvq~lt  653 (1335)
T KOG3632|consen  582 RTGAAVK-QLAGSVHVAWEPPSSPPFTAPARMIGATVLMELR-----QTLY--AGSLTKAMQESLDNSAHSGYISVQRLT  653 (1335)
T ss_pred             cchhhhh-hhccceeeeccCCCCCCccccceeeeeecchhhh-----hhcc--cccchHHHHhhccccCCceeeehhhhh
Confidence            3444444 6778999999997766666677777663211100     0011  2333344445554 3446888888999


Q ss_pred             CCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCc
Q psy11701        485 GAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT  564 (745)
Q Consensus       485 ~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~  564 (745)
                      ..|..+....+.. +.-++|..|.++++..++.++..++|-+-.. +    --.+.|.......          +.....
T Consensus       654 SrGsqd~lrc~Ll-vgg~a~vvpsqlrv~n~tqtSa~itwvp~ns-n----~~Hviyln~eE~~----------ps~a~~  717 (1335)
T KOG3632|consen  654 SRGSQDQLRCILL-VGGAAPVVPSQLRVWNATQTSAMITWVPFNS-N----FLHVIYLNAEEPR----------PSVAEM  717 (1335)
T ss_pred             ccCCCCcceeeEe-ccccccccchhhhhhhhhchhhheeeeecCC-C----cceeeecCCccCC----------Cchhhh
Confidence            9998887765443 3446778899999999999999999986432 1    1133443322221          114456


Q ss_pred             ceeeecCCCCCccEEEEEEEEec
Q psy11701        565 TSAKLAGLEPSTKYRIHLAGYTK  587 (745)
Q Consensus       565 ~~~~l~~L~p~t~Y~~~V~a~n~  587 (745)
                      ..+++.+|.|++.|.++|-|.-.
T Consensus       718 y~ytf~~lrpgt~y~a~vea~~p  740 (1335)
T KOG3632|consen  718 YNYTFMRLRPGTDYWASVEAALP  740 (1335)
T ss_pred             hHHHHhccCCCCccceecccccC
Confidence            77899999999999999988754

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.59  E-value=0.0097  Score=46.63  Aligned_cols=65  Identities=12%  Similarity=0.193  Sum_probs=39.7

Q ss_pred             CCeEEEEEEE-eecCCCeEEEEeCCEeccC--C-CCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        140 EETVTFECKA-SGLPEPEIHWVHNGKPISQ--A-PPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       140 G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~--~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      .....+.|.+ .|.|.+.|+|+++......  . ..........+.|.+.....+|.-.|+|++.+..-
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l   83 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL   83 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence            3456789999 5699999999997111100  0 00001111224677766666666789999998753

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA02982 hypothetical protein; Provisional

Probab=96.47  E-value=0.036  Score=48.44  Aligned_cols=117  Identities=17%  Similarity=0.367  Sum_probs=69.1

Q ss_pred             ceeEecCCcEEEEEEE-eecCCCeeEEEEC-CEecCC---------------C---C--CeEeccCCcEEEEccCCCCCC
Q psy11701         42 KEVALRNKKVELFCIF-GGTPLPQTIWSKD-GVPINP---------------S---D--RISQGNYGKSLIIKHVEFSDQ   99 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~-~~~i~~---------------~---~--~~~~~~~~~~L~i~~~~~~d~   99 (745)
                      ++....|++|.|.|.. .+.......|+++ +..|..               +   +  +.+.+...++|+|+++..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            4456679999999996 2233447889984 333331               0   0  133445567999999999999


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEEEe-cCeEEecCceeEeeCC-CeEEEEEEEeecCCCeEEEEeCCEe
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEE-ETVTFECKASGLPEPEIHWVHNGKP  165 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V~~-~p~~~~~~~~~~v~~G-~~~~l~C~~~~~p~~~v~W~~~g~~  165 (745)
                      |-|+|++....+....-.-=|.|.. ...+       .+.++ ..-.+.|-+-.....-..|.-+|..
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            9999999876543332111222211 1111       11223 3345789885433332389988764

>PHA02633 hypothetical protein; Provisional

Probab=96.45  E-value=0.011  Score=40.40  Aligned_cols=39  Identities=23%  Similarity=0.198  Sum_probs=33.7

Q ss_pred             cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       178 ~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      ....|.|.++..+|+|.|.|..+|..-....++.+.|..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            345799999999999999999999888888888888864

>PHA02633 hypothetical protein; Provisional

Probab=96.43  E-value=0.016  Score=39.63  Aligned_cols=41  Identities=22%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             cCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEec
Q psy11701         84 NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA  125 (745)
Q Consensus        84 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~  125 (745)
                      ..+..|.|-++..+|+|.|.|.+.+..--.. .++.|+|...
T Consensus        15 ~~~~nLwilpa~~sDSGiYiC~~rn~t~c~~-~si~l~V~~~   55 (63)
T PHA02633         15 DNCNNMLILNPTQSDSGIYMCITKNETYSDM-MKFDLCICLR   55 (63)
T ss_pred             cccccEEEeccccccCcEEEEEEcCCCeeEE-EEEEEEEeec
Confidence            3566899999999999999999987644433 4467777653

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.42  E-value=0.0055  Score=50.10  Aligned_cols=76  Identities=17%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             eCCCeEEEEEEEee-----cCCCeEEEEeCCEeccCCCCCCce--------------eecCceEEEccCCCCCCEEEEEE
Q psy11701        138 AEEETVTFECKASG-----LPEPEIHWVHNGKPISQAPPNPRR--------------KVGPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       138 ~~G~~~~l~C~~~~-----~p~~~v~W~~~g~~~~~~~~~~~~--------------~~~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      .=++++.|+|.+..     .+...+.|.++|+.+-..+.....              ..++.+|.+.....- .|.|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            34799999999965     223479999998876422111111              123446877764433 8999999


Q ss_pred             EEeCCceEEEEEEEEE
Q psy11701        199 ATNSLGYVYKDVYVNV  214 (745)
Q Consensus       199 ~~~~~g~~~~~~~l~v  214 (745)
                      +.......+..+.|..
T Consensus       104 Vt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  104 VTELSREGETTIELKY  119 (130)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEecCCCceEEEEEEE
Confidence            9987776666655554

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.40  E-value=0.015  Score=44.82  Aligned_cols=64  Identities=19%  Similarity=0.225  Sum_probs=42.3

Q ss_pred             eeCCCeEEEEEEEee-cCC--CeEEEEeCCEeccCCCCCCce-----eecCceEEEccCCCCCCE-EEEEEEEe
Q psy11701        137 AAEEETVTFECKASG-LPE--PEIHWVHNGKPISQAPPNPRR-----KVGPNRITIENLRKSDTG-NYGCNATN  201 (745)
Q Consensus       137 v~~G~~~~l~C~~~~-~p~--~~v~W~~~g~~~~~~~~~~~~-----~~~~~~L~i~~v~~~d~G-~Y~C~~~~  201 (745)
                      +.+|..+++.|.+.+ .|.  ..+.|+++...+.........     ......++|... ++|.| .|+|+|.-
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L   84 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL   84 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence            578999999999975 554  589999987776643322110     112245666654 66666 79999863

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.39  E-value=0.013  Score=45.79  Aligned_cols=60  Identities=17%  Similarity=0.231  Sum_probs=36.5

Q ss_pred             CcEEEEEEE-eecCCCeeEEEECCEecCCCCCeEeccCC-----cEEEEccCCCCCCE-EEEEEEEeCC
Q psy11701         49 KKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYG-----KSLIIKHVEFSDQG-SYTCEVSNGV  110 (745)
Q Consensus        49 ~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~-----~~L~i~~~~~~d~G-~Y~C~~~~~~  110 (745)
                      ..+.+.|.+ .|.|.+.|.|+++..... .........+     +.|.+ ..+.+|.| .|+|++.+..
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~-~P~~~d~Gk~ltC~v~h~a   82 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSL-VPTPEANGKEVTCKVEHET   82 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEE-ecCHHHCCCEEEEEEeCcc
Confidence            567899988 577999999999722111 0111111222     24555 34455555 8999998753

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.35  E-value=0.023  Score=44.51  Aligned_cols=72  Identities=18%  Similarity=0.289  Sum_probs=41.4

Q ss_pred             CCcEEEEEEE-eecCCCeeEEEECCEecCCCCCeEeccCC-----cEEEEccCCCCCCE-EEEEEEEeCC-eeeEEEEEE
Q psy11701         48 NKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYG-----KSLIIKHVEFSDQG-SYTCEVSNGV-GEAKSYSID  119 (745)
Q Consensus        48 G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~~~~~~~-----~~L~i~~~~~~d~G-~Y~C~~~~~~-g~~~~~~~~  119 (745)
                      .....+.|.+ .|+|.++|+|+++..... .........+     +.|.+ ..+.+|.| .|+|++.+.. .+.....+.
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~-~p~~~d~G~~~tC~v~h~~l~~~~~~~~~   92 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRL-VPSREANGKELTCVVSHPTLQEPQRFSVT   92 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEE-ecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            3567889999 788999999999711110 0011111222     24555 44555666 8999998753 233334444


Q ss_pred             EE
Q psy11701        120 LS  121 (745)
Q Consensus       120 l~  121 (745)
                      |.
T Consensus        93 L~   94 (95)
T cd05719          93 LN   94 (95)
T ss_pred             ee
Confidence            43

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.34  E-value=0.016  Score=45.05  Aligned_cols=70  Identities=14%  Similarity=0.203  Sum_probs=44.8

Q ss_pred             eeEeeCCCeEEE-EEEE-eecCCCeEEEEeCCEeccCC--C-CCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        134 FINAAEEETVTF-ECKA-SGLPEPEIHWVHNGKPISQA--P-PNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       134 ~~~v~~G~~~~l-~C~~-~~~p~~~v~W~~~g~~~~~~--~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ...+.+|+.+.+ .|.+ .|.|++.|.|+.+.......  . .......-.+.|.+.....+|.-.++|++.+..
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            345678899988 9998 56899999999863322210  0 000111122466676666667778999998764

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.16  E-value=0.014  Score=45.12  Aligned_cols=46  Identities=28%  Similarity=0.411  Sum_probs=39.0

Q ss_pred             CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701         78 DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL  123 (745)
Q Consensus        78 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~  123 (745)
                      +++.+...+-+|.|+.++..|+|.|..++++..|......+.|.|.
T Consensus        62 ~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   62 NRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             HHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             ceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            5677878888999999999999999999999999998888888774

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=96.13  E-value=0.021  Score=46.18  Aligned_cols=83  Identities=14%  Similarity=0.160  Sum_probs=55.2

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCC--CCccEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE--PSTKYR  579 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--p~t~Y~  579 (745)
                      +...+|.++++.+..- ...|.|+++... ..-..|.|+|+......|..... ..   +.......|++..  +...|.
T Consensus        20 ~~lp~P~nv~~~s~nf-~~iL~W~~~~~~-~~~~~ytVq~~~~~~~~W~~v~~-C~---~i~~~~Cdlt~~~~~~~~~Y~   93 (107)
T PF01108_consen   20 ASLPAPQNVTVDSVNF-KHILRWDPGPGS-PPNVTYTVQYKKYGSSSWKDVPG-CQ---NITETSCDLTDETSDPSESYY   93 (107)
T ss_dssp             SSGSSCEEEEEEEETT-EEEEEEEESTTS-SSTEEEEEEEEESSTSCEEEECC-EE---EESSSEEECTTCCTTTTSEEE
T ss_pred             ccCCCCCeeEEEEECC-ceEEEeCCCCCC-CCCeEEEEEEEecCCcceeeccc-ee---cccccceeCcchhhcCcCCEE
Confidence            3445788999988654 477999995532 25578999999555544443310 11   2344677777644  788999


Q ss_pred             EEEEEEecCCC
Q psy11701        580 IHLAGYTKAGD  590 (745)
Q Consensus       580 ~~V~a~n~~G~  590 (745)
                      +||+|......
T Consensus        94 ~rV~A~~~~~~  104 (107)
T PF01108_consen   94 ARVRAEVGNQT  104 (107)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEeCCcc
Confidence            99999875543

...

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=96.11  E-value=0.014  Score=47.35  Aligned_cols=80  Identities=16%  Similarity=0.280  Sum_probs=49.9

Q ss_pred             ceeEEEcCCceEEEEeeCCCC----CCCc--------eeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCc
Q psy11701        509 SLEAIPLGSSAFYLKWVKPEQ----PNGV--------LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST  576 (745)
Q Consensus       509 ~~~~~~~~~~~i~l~W~~p~~----~~g~--------i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t  576 (745)
                      .+.+ .....+|.|.+.+|..    .+..        -..|.|.|...++...  ...    . ......+.|.+|.|++
T Consensus         7 ~v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~--~~~----~-~~~~~~~~l~~L~p~t   78 (106)
T PF09294_consen    7 SVNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEK--KKE----I-ETKNSSVTLSDLKPGT   78 (106)
T ss_dssp             EEEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCE--EEE----E-ESSSEEEEEES--TTS
T ss_pred             EEEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccc--eEE----E-eecCCEEEEeCCCCCC
Confidence            4776 4578899999998861    1111        2469999888766511  110    1 3345677999999999


Q ss_pred             cEEEEEEEEec--CCCCCCcce
Q psy11701        577 KYRIHLAGYTK--AGDGAESKY  596 (745)
Q Consensus       577 ~Y~~~V~a~n~--~G~g~~S~~  596 (745)
                      .|.|+|.|...  ...|.+|.+
T Consensus        79 ~YCv~V~~~~~~~~~~s~~S~~  100 (106)
T PF09294_consen   79 NYCVSVQAFSPSQNKNSQPSEP  100 (106)
T ss_dssp             EEEEEEEEEECSSTEEEEEBSE
T ss_pred             CEEEEEEEEeccCCCcCCCCCC
Confidence            99999999332  234555544

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>KOG4367|consensus

Probab=96.05  E-value=0.0078  Score=58.14  Aligned_cols=82  Identities=28%  Similarity=0.302  Sum_probs=63.2

Q ss_pred             ecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCc
Q psy11701        414 IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE  493 (745)
Q Consensus       414 ~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~  493 (745)
                      ....++++.|+.|+.  ...+..||.++.-..+  ...++++.  .+..+-+++.+|..++.|..||.|+|..|.+++|.
T Consensus       450 t~nns~t~~wkqp~~--~~~~~dg~~leld~g~--~g~frevy--~g~etmctvdglhfns~y~arvka~n~tg~s~ys~  523 (699)
T KOG4367|consen  450 THNNSATLSWKQPPL--STVPADGYILELDDGN--GGQFREVY--VGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSK  523 (699)
T ss_pred             ccCCceEEEeecCCC--CCCCCcceEEEeecCC--CCceeEEE--ecCceeEEecceecchhHHHHHHHhhccCCCcccc
Confidence            456899999996443  3456889998774432  23444444  46788899999999999999999999999999999


Q ss_pred             ceEEeCCC
Q psy11701        494 IISFVTPE  501 (745)
Q Consensus       494 ~~~~~t~~  501 (745)
                      .+...|.+
T Consensus       524 tl~lqts~  531 (699)
T KOG4367|consen  524 TLVLQTSE  531 (699)
T ss_pred             eeEeeecc
Confidence            88776643

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.03  E-value=0.02  Score=44.66  Aligned_cols=64  Identities=9%  Similarity=0.170  Sum_probs=39.7

Q ss_pred             CeEEEEEEEe-ecCCCeEEEEeCCEeccCCC---CCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        141 ETVTFECKAS-GLPEPEIHWVHNGKPISQAP---PNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       141 ~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      ..+.++|.+. +.|.+.|+|+++........   .........+.|.+..-..+|...|+|++.+..-
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al   83 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL   83 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence            4578999985 68999999999722111000   0001111234677766666677789999998754

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>KOG4152|consensus

Probab=95.98  E-value=0.019  Score=57.28  Aligned_cols=66  Identities=17%  Similarity=0.326  Sum_probs=43.9

Q ss_pred             eecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCC---------cceeEEEeecCccccCCCcceEE
Q psy11701        568 KLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTP---------NNLVISWTAMPEIEHNAPHFKYR  638 (745)
Q Consensus       568 ~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p---------~~~~v~W~~~~~~~~~g~i~~y~  638 (745)
                      .-..|.+|..|+|+|.|.|..|.|++|.+...++...     ..|+.|         -.+.+.|+++..- +.|.|.-|.
T Consensus       650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~p-----G~P~apS~~ri~k~~eGi~l~weppt~p-~sg~Iieys  723 (830)
T KOG4152|consen  650 VKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAP-----GKPTAPSGARIKKTIEGISLVWEPPTKP-GSGTIIEYS  723 (830)
T ss_pred             cccccccccceeeeeeeeeccCCCchhhheeeeeccC-----CCCCCcccccccccccceeecccCCCCC-CCcceEEee
Confidence            3457999999999999999999999998876554332     223333         3457788755432 234444444


Q ss_pred             E
Q psy11701        639 I  639 (745)
Q Consensus       639 i  639 (745)
                      .
T Consensus       724 ~  724 (830)
T KOG4152|consen  724 P  724 (830)
T ss_pred             h
Confidence            3

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=95.95  E-value=0.055  Score=43.30  Aligned_cols=70  Identities=14%  Similarity=0.191  Sum_probs=44.8

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecC--C-CeEEEEeCCE-ec---c--------CCCCCCceee------cCceEEEccCC
Q psy11701        130 VEPEFINAAEEETVTFECKASGLP--E-PEIHWVHNGK-PI---S--------QAPPNPRRKV------GPNRITIENLR  188 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p--~-~~v~W~~~g~-~~---~--------~~~~~~~~~~------~~~~L~i~~v~  188 (745)
                      .++....+..|+.++|.|.++|..  . ..+.|+|... .+   .        ......+...      ..-.|.|.+++
T Consensus         3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~   82 (115)
T cd05721           3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR   82 (115)
T ss_pred             eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence            345556788999999999997743  3 4788988321 11   0        0001111111      11369999999


Q ss_pred             CCCCEEEEEEE
Q psy11701        189 KSDTGNYGCNA  199 (745)
Q Consensus       189 ~~d~G~Y~C~~  199 (745)
                      .+|++.|.|..
T Consensus        83 a~DTa~Y~Ca~   93 (115)
T cd05721          83 ANQTDIYFCKI   93 (115)
T ss_pred             HHHCeEEEEEe
Confidence            99999999965

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=95.69  E-value=0.065  Score=41.15  Aligned_cols=70  Identities=14%  Similarity=0.281  Sum_probs=48.3

Q ss_pred             eeccceeEecCCcEEEEEEEeec-----CCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT-----PLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~-----p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      +.|+...+..|++|+..|.....     ....+.|..|++.|+......+....+++++.+......-.|.|...
T Consensus         8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen    8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred             EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence            45666779999999999999422     45589999999988755555555555678887777666667777653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=95.64  E-value=0.048  Score=43.28  Aligned_cols=85  Identities=14%  Similarity=0.134  Sum_probs=58.4

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCc-----ceeeecCCCCCc
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT-----TSAKLAGLEPST  576 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~L~p~t  576 (745)
                      .+|+.|.++...+.....++-.|++....+.+- .|.+.|...+ ..+.......  ....+.     ..|.-.+..-.+
T Consensus         6 ~~p~~P~~~~C~S~~~etftC~W~~g~~~~l~~-~y~L~Y~~~~-~~~~eCp~~~--~~~~ns~~~~~C~F~~~~t~lf~   81 (104)
T PF09067_consen    6 LPPEKPENLKCFSREMETFTCFWEPGSEGNLPT-NYTLFYKKEG-EEWKECPDYS--TSGPNSTVRHICYFPKSDTSLFV   81 (104)
T ss_dssp             HHCCCCEEEEEEBSSSS-EEEEEEEESSSTSTC-EEEEEEEETT-SEEEEESESS--TTETTEEEEEEEEE-CCGCSSSS
T ss_pred             cCCCCCccCccCCCCCCcEEEEeeCCCCCCCCC-cEEEEEEeCC-CCCccCCCeE--ecCCCCceeEEEEcCCCCeEEEE
Confidence            357888999999999999999999988765443 3999999876 3222222111  112232     445555888999


Q ss_pred             cEEEEEEEEecCCC
Q psy11701        577 KYRIHLAGYTKAGD  590 (745)
Q Consensus       577 ~Y~~~V~a~n~~G~  590 (745)
                      .|.|+|.|.|..|.
T Consensus        82 ~y~i~V~a~~~~~~   95 (104)
T PF09067_consen   82 PYCIQVEATNALGS   95 (104)
T ss_dssp             EEEEEEEEEETTEE
T ss_pred             EEEEEEEeccCCCc
Confidence            99999999998774

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.35  E-value=0.025  Score=46.30  Aligned_cols=77  Identities=21%  Similarity=0.291  Sum_probs=43.5

Q ss_pred             eEecCCcEEEEEEEeec-----CCCeeEEEECCEecCC---C-CCeE-----------eccCCcEEEEccCCCCCCEEEE
Q psy11701         44 VALRNKKVELFCIFGGT-----PLPQTIWSKDGVPINP---S-DRIS-----------QGNYGKSLIIKHVEFSDQGSYT  103 (745)
Q Consensus        44 ~v~~G~~~~l~C~~~g~-----p~~~v~W~~~~~~i~~---~-~~~~-----------~~~~~~~L~i~~~~~~d~G~Y~  103 (745)
                      ...-.++|.|.|.+...     +..-|.|.++|+.|-.   . .+..           +..++.+|.+...+.- .|.|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            44457999999999642     2235899999887631   1 1110           1122346888775444 89999


Q ss_pred             EEEEeCCeeeEEEEEEEEE
Q psy11701        104 CEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus       104 C~~~~~~g~~~~~~~~l~V  122 (745)
                      |.+.....+.. ..+.|..
T Consensus       102 CeVt~~~~ege-~~i~Lk~  119 (130)
T PF08204_consen  102 CEVTELSREGE-TTIELKY  119 (130)
T ss_dssp             EEEEETTEEEE-EEEEEEE
T ss_pred             EEEEecCCCce-EEEEEEE
Confidence            99988766555 4466655

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.12  E-value=0.034  Score=50.96  Aligned_cols=48  Identities=29%  Similarity=0.562  Sum_probs=39.7

Q ss_pred             CCCeeEEEE-CCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         61 PLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        61 p~~~v~W~~-~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      ..|.+.|.. +|..|....++.+...| .|.+.+...+++|.|+|.....
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG-~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETG-KLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCc-eEEeeccccccCCceEEEEEEE
Confidence            467899997 56677766778877766 4999999999999999999764

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=94.78  E-value=0.2  Score=40.46  Aligned_cols=80  Identities=24%  Similarity=0.284  Sum_probs=52.0

Q ss_pred             eccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEE--EEccCceeEEEecccc--cCc
Q psy11701        399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL--IVNKGESTTTEVDKFV--PAS  474 (745)
Q Consensus       399 ~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~L~--~~~  474 (745)
                      .....+|.++++..  ......|.|++++...   .-..|.++|.....  ..+..+  .. ......+.++...  ...
T Consensus        19 ~~~lp~P~nv~~~s--~nf~~iL~W~~~~~~~---~~~~ytVq~~~~~~--~~W~~v~~C~-~i~~~~Cdlt~~~~~~~~   90 (107)
T PF01108_consen   19 SASLPAPQNVTVDS--VNFKHILRWDPGPGSP---PNVTYTVQYKKYGS--SSWKDVPGCQ-NITETSCDLTDETSDPSE   90 (107)
T ss_dssp             -SSGSSCEEEEEEE--ETTEEEEEEEESTTSS---STEEEEEEEEESST--SCEEEECCEE-EESSSEEECTTCCTTTTS
T ss_pred             cccCCCCCeeEEEE--ECCceEEEeCCCCCCC---CCeEEEEEEEecCC--cceeecccee-cccccceeCcchhhcCcC
Confidence            35567889999876  3556789999954332   34679999983333  344443  22 2344666666643  677


Q ss_pred             ceeEEEEEecCC
Q psy11701        475 KNFARVLAFNGA  486 (745)
Q Consensus       475 ~Y~~~V~a~n~~  486 (745)
                      .|.+||+|.-..
T Consensus        91 ~Y~~rV~A~~~~  102 (107)
T PF01108_consen   91 SYYARVRAEVGN  102 (107)
T ss_dssp             EEEEEEEEEETT
T ss_pred             CEEEEEEEEeCC
Confidence            899999998543

...

>KOG3632|consensus

Probab=94.68  E-value=0.21  Score=54.35  Aligned_cols=183  Identities=15%  Similarity=0.207  Sum_probs=114.7

Q ss_pred             EEEEEEEe-ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEeccc
Q psy11701        392 AQATLTVQ-VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKF  470 (745)
Q Consensus       392 ~~~~l~v~-~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  470 (745)
                      ....|.+. ..+..|.++++.+ .+..+..++|-+.+....      ..| |-.....  .     ........+++.+|
T Consensus       661 lrc~Llvgg~a~vvpsqlrv~n-~tqtSa~itwvp~nsn~~------Hvi-yln~eE~--~-----ps~a~~y~ytf~~l  725 (1335)
T KOG3632|consen  661 LRCILLVGGAAPVVPSQLRVWN-ATQTSAMITWVPFNSNFL------HVI-YLNAEEP--R-----PSVAEMYNYTFMRL  725 (1335)
T ss_pred             ceeeEeccccccccchhhhhhh-hhchhhheeeeecCCCcc------eee-ecCCccC--C-----CchhhhhHHHHhcc
Confidence            33444432 4467889999988 899999999998543321      122 3222111  1     11335566788999


Q ss_pred             ccCcceeEEEEEecC-CCC--------CCCCcceEEeCCC-CCCCCCCceeEEEc-CCceEEEEeeCCC-C-----CCCc
Q psy11701        471 VPASKNFARVLAFNG-AYN--------GPPSEIISFVTPE-GVPGTVQSLEAIPL-GSSAFYLKWVKPE-Q-----PNGV  533 (745)
Q Consensus       471 ~~~~~Y~~~V~a~n~-~G~--------g~~S~~~~~~t~~-~~P~~p~~~~~~~~-~~~~i~l~W~~p~-~-----~~g~  533 (745)
                      .|++.|.++|.+.-. .+.        +.....+.++|.. ++|.+|.++.+..- +...+.++|.||. +     ++-.
T Consensus       726 rpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~  805 (1335)
T KOG3632|consen  726 RPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVA  805 (1335)
T ss_pred             CCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCcee
Confidence            999999999998754 211        2223456677654 56678888887654 5677899999985 2     2337


Q ss_pred             eeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCC-CccEEEEEEEEecCCCCCCccee
Q psy11701        534 LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP-STKYRIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       534 i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p-~t~Y~~~V~a~n~~G~g~~S~~~  597 (745)
                      ++||.|+-...   ......     ......+...+..|.- ...=.|.|+....-|.+.-|...
T Consensus       806 vtgYavyadgq---kv~Eva-----fptagst~VelsQlq~~l~~~~V~vRtms~~gesvdsipA  862 (1335)
T KOG3632|consen  806 VTGYAVYADGQ---KVEEVA-----FPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESVDSIPA  862 (1335)
T ss_pred             eeeeeeeeCCc---eeeeee-----cccCCceEEEeeeehhhheecceeEEecccCccccccccc
Confidence            99999987522   222211     1122334555666655 56677888888888877765444

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=94.66  E-value=0.74  Score=44.20  Aligned_cols=189  Identities=16%  Similarity=-0.008  Sum_probs=105.6

Q ss_pred             eeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEE
Q psy11701        435 FRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIP  514 (745)
Q Consensus       435 i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~  514 (745)
                      +.+|.+ |+...+.... .--.+.......+....|.+...|.+..-..+..-.+..+......+.  .-.+.+.....-
T Consensus         5 ~~~~~~-~~t~~~~~~~-~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~i~~~~~~~~~~   80 (343)
T COG3401           5 IDGFVL-YRTKKDLKLK-RIGTIKNKYQTHYYDEGLEGEESYPYQEGTTKVDKISYDSERILVKTS--FIERVRSVFASL   80 (343)
T ss_pred             ceeEEE-EEEcccchhh-hhhccccchhhhhhhccccccCcceeeecccccceeeecCcceEEEee--eccccccccchh
Confidence            556766 4444332211 111123445667777888888888877666655434444555544443  222222333333


Q ss_pred             cCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCc
Q psy11701        515 LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES  594 (745)
Q Consensus       515 ~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S  594 (745)
                      .-+..+.+-|.+-.+  -+...|.|+....+.- ..+....   . +.-.-.+.-.+|.++..|...|.|.+..+.=+.|
T Consensus        81 ~~~~~~~~~w~~~~d--~~~~~Y~i~~~~gD~~-f~r~~~~---~-n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs  153 (343)
T COG3401          81 ERPKSVKVFWSPHPD--VSVGKYIIQRQNGDGK-FLRTGLV---K-NRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS  153 (343)
T ss_pred             cCcceeeecccccCC--CCCCeEEEEEecCchh-hhhhhHH---H-hccchhheecccccccceeeeEEeecccccceee
Confidence            355669999998654  2455799988765433 2221110   0 2223445666999999999999999887665554


Q ss_pred             -ceeeecccCCCCCC---CCCCCCCcceeEEEeecCccccCCCcceEEEE
Q psy11701        595 -KYLFYVPFKNPDNV---EGRGSTPNNLVISWTAMPEIEHNAPHFKYRIF  640 (745)
Q Consensus       595 -~~~~~~~~~~~~~~---~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~  640 (745)
                       ..+..++...|...   .+...-++++.++|+-++.+      .+|+|+
T Consensus       154 f~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~------~yy~IY  197 (343)
T COG3401         154 FTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE------DYYRIY  197 (343)
T ss_pred             eeeeecccccCCceeeeeeeecCCCCcceeeccCcccc------ceEEEe
Confidence             22222222222222   12224568889999866543      378886

>KOG4228|consensus

Probab=94.22  E-value=0.22  Score=55.66  Aligned_cols=104  Identities=19%  Similarity=0.137  Sum_probs=71.3

Q ss_pred             EEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccc
Q psy11701        480 VLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI  559 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~  559 (745)
                      +.+.+..|.++++..+.+.+....|..|.    ...+.+.++++|.++..  ..+..|.+.+...+........      
T Consensus       144 ~~~~~~~~~~~~~t~i~i~~~~~~p~~~~----~~~~~~~it~~w~~~~~--~~~~~ykl~~~~~d~~~~~~v~------  211 (1087)
T KOG4228|consen  144 PLAIASPGLGPPSTYIQITTNANSPIQPG----EEEEYTTITGSWSPPHA--VSLDTYKLLHLDPDTGYEISVT------  211 (1087)
T ss_pred             ccccCCcccCCCCceEEEeccCCCCCCCC----cceEEEEEEecCCCCCc--ccchhhhhhhcCCcccceeeee------
Confidence            77888888888877788888888887776    44577899999998743  4677788877665333222111      


Q ss_pred             cCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcce
Q psy11701        560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKY  596 (745)
Q Consensus       560 ~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~  596 (745)
                       .....+....+|.|-..|.++..+....+.+.+...
T Consensus       212 -~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~  247 (1087)
T KOG4228|consen  212 -LTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAE  247 (1087)
T ss_pred             -ccCCCCCcccCCCCcccccccccCccccccCCCCcc
Confidence             223344455677888888888888877766666443

>PHA03042 CD47-like protein; Provisional

Probab=94.08  E-value=0.18  Score=46.49  Aligned_cols=70  Identities=23%  Similarity=0.311  Sum_probs=45.1

Q ss_pred             ecCCcEEEEEEEeec-----CCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         46 LRNKKVELFCIFGGT-----PLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        46 ~~G~~~~l~C~~~g~-----p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      .-.+++.+.|..+..     ...-+.|..|++.+-..+..    ..++|.+ +...+-.|+|+|+|.+...+.. ..++|
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk-~~IeL  102 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----NTSSLKF-NFSKNLSGNYTCEAINKFNKIK-NTIEL  102 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC----cceEEEE-eccccCCCceeEEEeecccCcc-EEEEE
Confidence            347899999999643     12358999999887532222    2246777 4445568999999987554443 33444


Q ss_pred             E
Q psy11701        121 S  121 (745)
Q Consensus       121 ~  121 (745)
                      .
T Consensus       103 k  103 (286)
T PHA03042        103 Q  103 (286)
T ss_pred             E
Confidence            3

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=93.85  E-value=0.13  Score=41.60  Aligned_cols=63  Identities=17%  Similarity=0.295  Sum_probs=41.9

Q ss_pred             CcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEec--CcccCCCCcceEEeCC
Q psy11701        670 TFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN--GAYNGPPSEIISFVTP  739 (745)
Q Consensus       670 ~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~--~~G~g~~s~~~~~~t~  739 (745)
                      +...|.|.   +|..+..    ............+.|.+|.|++.|=|+|+|..  ....|.+|+++-.+|+
T Consensus        42 ~~~~Y~v~---~~~~~~~----~~~~~~~~~~~~~~l~~L~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~t~  106 (106)
T PF09294_consen   42 PSLSYNVS---YWKNGSN----EKKKEIETKNSSVTLSDLKPGTNYCVSVQAFSPSQNKNSQPSEPQCITTT  106 (106)
T ss_dssp             GG-EEEEE---EEETTTS----CEEEEEESSSEEEEEES--TTSEEEEEEEEEECSSTEEEEEBSEEEEE--
T ss_pred             CCeEEEEE---EEeCCCc----cceEEEeecCCEEEEeCCCCCCCEEEEEEEEeccCCCcCCCCCCEeEeCc
Confidence            34567775   3666665    22233356777889999999999999999933  4456999998888774

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>PHA03042 CD47-like protein; Provisional

Probab=93.71  E-value=0.28  Score=45.26  Aligned_cols=63  Identities=24%  Similarity=0.449  Sum_probs=42.6

Q ss_pred             CCCeEEEEEEEeec-----CCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        139 EEETVTFECKASGL-----PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       139 ~G~~~~l~C~~~~~-----p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      =.+++.+.|.++..     ....+.|.++++.+-..+..     ...+|.+. -..+-.|+|+|+|.+...+..
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk   97 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----NTSSLKFN-FSKNLSGNYTCEAINKFNKIK   97 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----cceEEEEe-ccccCCCceeEEEeecccCcc
Confidence            37899999998752     34579999999887633222     11456553 345568999999986554333

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=93.64  E-value=0.44  Score=37.90  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=54.0

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEE-ccCceeE-----EEec--ccc
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV-NKGESTT-----TEVD--KFV  471 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~-~~~~~~~-----~~i~--~L~  471 (745)
                      .||..|.++.+.. .....++..|+++......   ..|.+.|+..+   ..+..... ......+     +.+.  +..
T Consensus         6 ~~p~~P~~~~C~S-~~~etftC~W~~g~~~~l~---~~y~L~Y~~~~---~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~   78 (104)
T PF09067_consen    6 LPPEKPENLKCFS-REMETFTCFWEPGSEGNLP---TNYTLFYKKEG---EEWKECPDYSTSGPNSTVRHICYFPKSDTS   78 (104)
T ss_dssp             HHCCCCEEEEEEB-SSSS-EEEEEEEESSSTST---CEEEEEEEETT---SEEEEESESSTTETTEEEEEEEEE-CCGCS
T ss_pred             cCCCCCccCccCC-CCCCcEEEEeeCCCCCCCC---CcEEEEEEeCC---CCCccCCCeEecCCCCceeEEEEcCCCCeE
Confidence            4688899999887 7888999999997543322   33999888765   23333322 1112222     4444  667


Q ss_pred             cCcceeEEEEEecCCCC
Q psy11701        472 PASKNFARVLAFNGAYN  488 (745)
Q Consensus       472 ~~~~Y~~~V~a~n~~G~  488 (745)
                      -...|.++|.|.|..|.
T Consensus        79 lf~~y~i~V~a~~~~~~   95 (104)
T PF09067_consen   79 LFVPYCIQVEATNALGS   95 (104)
T ss_dssp             SSSEEEEEEEEEETTEE
T ss_pred             EEEEEEEEEEeccCCCc
Confidence            78899999999998764

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=93.57  E-value=2.7  Score=45.72  Aligned_cols=32  Identities=9%  Similarity=0.224  Sum_probs=26.5

Q ss_pred             CCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701        561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE  593 (745)
Q Consensus       561 ~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~  593 (745)
                      ......|.+.+|-+ -.|.++|+|.|..|....
T Consensus       656 rt~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~  687 (952)
T COG4733         656 RTSAAGFDVEGIPA-GQYAIRVRAINVFEPNSP  687 (952)
T ss_pred             cccccceeecCcCc-cceEEEEEEeeccCCCCC
Confidence            44567899999988 789999999999886544

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=93.39  E-value=0.53  Score=36.17  Aligned_cols=66  Identities=14%  Similarity=0.386  Sum_probs=45.3

Q ss_pred             CCCceEEecCceEEEEEEEeec-----CCCeEEEeeCCEEccCceEEEeecC--cEEEcccCCCCCEEEEEEE
Q psy11701        224 APKDEYTVDGKTVVLTCRVFGA-----PKPEVNWIHNQKELTGGRYTILETG--DLKITDVAFADSGEYTCFA  289 (745)
Q Consensus       224 ~~~~~~v~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~~  289 (745)
                      .|....+..|+++++.|.....     ....|.|..++..++.+++....++  .+++.+......-.|-|..
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            3456677899999999998643     2346999999999999999887776  4555565554444666653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=92.69  E-value=3.7  Score=40.38  Aligned_cols=154  Identities=19%  Similarity=0.320  Sum_probs=87.4

Q ss_pred             eeEecCCcEEEEEEEee--c-CCCeeEEEECCEecCC-----------------CCCeEe--------ccCCcEEEEccC
Q psy11701         43 EVALRNKKVELFCIFGG--T-PLPQTIWSKDGVPINP-----------------SDRISQ--------GNYGKSLIIKHV   94 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g--~-p~~~v~W~~~~~~i~~-----------------~~~~~~--------~~~~~~L~i~~~   94 (745)
                      ..+..|.+|.|.|...-  + ...+..|+.-|-++.+                 .+.+.+        +-..++|+|.++
T Consensus       274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            34555999999999842  2 3447889876655442                 111222        223468999999


Q ss_pred             CCCCCEEEEEEEEeCCeeeE-EEEEEEEEEecCeEEecCceeEeeCCCeE-EEEEEEeec--CCCeEEEEeCCEeccCCC
Q psy11701         95 EFSDQGSYTCEVSNGVGEAK-SYSIDLSVLAAPYFTVEPEFINAAEEETV-TFECKASGL--PEPEIHWVHNGKPISQAP  170 (745)
Q Consensus        95 ~~~d~G~Y~C~~~~~~g~~~-~~~~~l~V~~~p~~~~~~~~~~v~~G~~~-~l~C~~~~~--p~~~v~W~~~g~~~~~~~  170 (745)
                      ..+.+|-|.|+|........ .+-  |.|.....|      ....+|+.. .+.|-+-..  .++.+.|.-+|.......
T Consensus       354 ~I~N~GCY~~~a~~g~~~~ec~~C--l~V~d~V~f------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~  425 (500)
T PHA02914        354 HINNAGCYEAQAFMGKFKEECRHC--FKVADHVFF------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEI  425 (500)
T ss_pred             EEEcCCceEEEEecCcchhhhhhh--eEeccEEEE------EEEeccCceEEEEEEEEecccCCceeEEEEccEEecCee
Confidence            99999999999986532211 111  222111111      012244433 468987543  345799999887665433


Q ss_pred             CCCce------ee--cCceEEEccCCCCC-CEEEEEEEEeCCc
Q psy11701        171 PNPRR------KV--GPNRITIENLRKSD-TGNYGCNATNSLG  204 (745)
Q Consensus       171 ~~~~~------~~--~~~~L~i~~v~~~d-~G~Y~C~~~~~~g  204 (745)
                      .....      ..  ....+.|.+-...| --.-.|+.....+
T Consensus       426 ~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~  468 (500)
T PHA02914        426 ADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQG  468 (500)
T ss_pred             cCcccccccccccccceEEEEEecccCccccccceEEEecCCC
Confidence            22111      11  12357777766666 3456677655443

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.64  E-value=1.2  Score=33.51  Aligned_cols=53  Identities=17%  Similarity=0.243  Sum_probs=31.9

Q ss_pred             CCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         62 LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        62 ~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      .+++.|.-.+..+.        ...+.+.....+.+|+|.+.|.|.+..-......+.|.|
T Consensus        26 ~~~~~l~~~~~k~~--------~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   26 KPSLFLENPGKKSL--------ETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEECSSCEEE--------EESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             ChhheeeccCcccc--------ccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            44677776554432        333456677888999999999995332222224445544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=92.53  E-value=0.56  Score=45.63  Aligned_cols=21  Identities=29%  Similarity=0.755  Sum_probs=17.5

Q ss_pred             cEEEEEEEeec-CCC-eeEEEEC
Q psy11701         50 KVELFCIFGGT-PLP-QTIWSKD   70 (745)
Q Consensus        50 ~~~l~C~~~g~-p~~-~v~W~~~   70 (745)
                      .++|+|.|.|+ |.. .+.|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            68999999998 433 7889999

>KOG4597|consensus

Probab=92.28  E-value=0.23  Score=49.47  Aligned_cols=94  Identities=14%  Similarity=0.100  Sum_probs=66.0

Q ss_pred             cCCCC-CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEE---CCEecCC--CCCeE--eccCCcEEEEccCCCCCCE
Q psy11701         29 NRHAP-KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK---DGVPINP--SDRIS--QGNYGKSLIIKHVEFSDQG  100 (745)
Q Consensus        29 ~~~~p-~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~---~~~~i~~--~~~~~--~~~~~~~L~i~~~~~~d~G  100 (745)
                      ++.+| ..++.-|....+..|++..++|-+.|.+.+.|+|.+   |++.+-.  ...+.  .......|.|-+....|+|
T Consensus       191 pe~e~~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~  270 (560)
T KOG4597|consen  191 PEFEPSCALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAG  270 (560)
T ss_pred             CCCCCCcccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCC
Confidence            34455 345566777789999999999999999999999975   3333221  11110  0011236999999999999


Q ss_pred             EEEEEEEeCCeeeEEEEEEEEEE
Q psy11701        101 SYTCEVSNGVGEAKSYSIDLSVL  123 (745)
Q Consensus       101 ~Y~C~~~~~~g~~~~~~~~l~V~  123 (745)
                      .|+|.+.+..|... ..+.+.+.
T Consensus       271 w~tCs~rcg~g~~~-rdv~c~s~  292 (560)
T KOG4597|consen  271 WYTCSARCGAGFLR-RDVPCSSV  292 (560)
T ss_pred             ceeeccccccceee-ccceeeee
Confidence            99999999887766 55666554

>KOG4597|consensus

Probab=92.18  E-value=0.22  Score=49.68  Aligned_cols=88  Identities=19%  Similarity=0.253  Sum_probs=64.6

Q ss_pred             EecCceeEeeCCCeEEEEEEEeecCCCeEEEEe---CCEeccCCCCC---CceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVH---NGKPISQAPPN---PRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~---~g~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      ...|....+-+|++..++|-+.|.+.+.|+|.+   |++.+......   .........|.|-+....|+|.|+|.+.+.
T Consensus       200 ~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg  279 (560)
T KOG4597|consen  200 VDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCG  279 (560)
T ss_pred             ccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence            334455567789999999999999999999986   44443322111   011223457999999999999999999999


Q ss_pred             CceEEEEEEEEEee
Q psy11701        203 LGYVYKDVYVNVLA  216 (745)
Q Consensus       203 ~g~~~~~~~l~v~~  216 (745)
                      .|.....+.+.+..
T Consensus       280 ~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  280 AGFLRRDVPCSSVK  293 (560)
T ss_pred             cceeeccceeeeec
Confidence            99888887777654

>PHA03286 envelope glycoprotein E; Provisional

Probab=91.94  E-value=4.1  Score=40.87  Aligned_cols=76  Identities=20%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             CcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEe-----cCeEE--e------------cCceeEeeCCCeEEEE
Q psy11701         86 GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA-----APYFT--V------------EPEFINAAEEETVTFE  146 (745)
Q Consensus        86 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~-----~p~~~--~------------~~~~~~v~~G~~~~l~  146 (745)
                      ++.|.|.+++..++|.|+-...++.|......+.|.|..     +|...  +            .+......+||++.|.
T Consensus       126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS  205 (492)
T PHA03286        126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS  205 (492)
T ss_pred             CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence            467999999999999999999988777776667788842     22111  1            1233345689999887


Q ss_pred             EEEe-e-cC---CCeEEEEe
Q psy11701        147 CKAS-G-LP---EPEIHWVH  161 (745)
Q Consensus       147 C~~~-~-~p---~~~v~W~~  161 (745)
                      -... . ..   ...+.|++
T Consensus       206 v~l~~~~~d~~Fsl~i~W~y  225 (492)
T PHA03286        206 VTAHLTNWAGAFSLEFRVLF  225 (492)
T ss_pred             EEEeecccCCCceEEEEEEE
Confidence            6664 2 12   23899986

>PHA03283 envelope glycoprotein E; Provisional

Probab=91.48  E-value=5.2  Score=41.14  Aligned_cols=76  Identities=17%  Similarity=0.132  Sum_probs=50.9

Q ss_pred             CCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCe---------EEecC------------ceeEeeCCCeE
Q psy11701         85 YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY---------FTVEP------------EFINAAEEETV  143 (745)
Q Consensus        85 ~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~---------~~~~~------------~~~~v~~G~~~  143 (745)
                      ..+.|.|.+++.+++|.|+-...++.+ .....+.|+|..++.         ..+.|            ......+|+++
T Consensus       132 ~~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf  210 (542)
T PHA03283        132 ERSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSF  210 (542)
T ss_pred             CCCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCce
Confidence            346799999999999999999998766 343557778876221         11111            12234689999


Q ss_pred             EEEEEEeec--C---CCeEEEEe
Q psy11701        144 TFECKASGL--P---EPEIHWVH  161 (745)
Q Consensus       144 ~l~C~~~~~--p---~~~v~W~~  161 (745)
                      .+.-.....  .   ...+.|++
T Consensus       211 ~lsi~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        211 DLSVHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             eEeEEEeeccCCCCceEEEEEEE
Confidence            987766431  1   23899986

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=91.33  E-value=11  Score=34.20  Aligned_cols=127  Identities=20%  Similarity=0.348  Sum_probs=66.6

Q ss_pred             eeEEEECCEecCCCC---CeEeccCC-----cEEEE-ccCCCCCCEEEEEEEEeCCeeeE----EEEEEEEEEecCeEEe
Q psy11701         64 QTIWSKDGVPINPSD---RISQGNYG-----KSLII-KHVEFSDQGSYTCEVSNGVGEAK----SYSIDLSVLAAPYFTV  130 (745)
Q Consensus        64 ~v~W~~~~~~i~~~~---~~~~~~~~-----~~L~i-~~~~~~d~G~Y~C~~~~~~g~~~----~~~~~l~V~~~p~~~~  130 (745)
                      .+.|+.||.++..+.   .......|     ++|.+ .+...+..=..+|++.-......    +....-.|+.+|.+.+
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv   87 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV   87 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence            688999999888432   12222233     24555 22233333478999974332222    3444456666666544


Q ss_pred             cCceeEeeCCCeEEEEEEEeecC--CCeEEEEeCCEeccCCCCCCceee-----cCceEEEccCCC--CCCE--EEEEEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLP--EPEIHWVHNGKPISQAPPNPRRKV-----GPNRITIENLRK--SDTG--NYGCNA  199 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g~~~~~~~~~~~~~~-----~~~~L~i~~v~~--~d~G--~Y~C~~  199 (745)
                      .     +..|.   .-|.+.-.|  ...+.|..++......  ......     ..+...|++...  ...|  .|+|.+
T Consensus        88 ~-----F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~~~~--~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l  157 (211)
T PF02124_consen   88 R-----FEDGY---AVCTARCVPRGNVTLRWSVGDDPSPAP--AATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRL  157 (211)
T ss_pred             E-----ecCCE---EEEEcceeeCCCeEEEEEECCccCCCC--CceeecCcccCCcceeEeecccCCCccCCceeEEEEE
Confidence            3     32333   347665444  2689999888754211  111111     123444544332  2334  799998


Q ss_pred             E
Q psy11701        200 T  200 (745)
Q Consensus       200 ~  200 (745)
                      .
T Consensus       158 ~  158 (211)
T PF02124_consen  158 I  158 (211)
T ss_pred             e
Confidence            6

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=91.21  E-value=0.55  Score=36.69  Aligned_cols=59  Identities=25%  Similarity=0.375  Sum_probs=37.5

Q ss_pred             EEEEeCCEeccCCCCCCc--eeecCceEEEccCCCCCCEEEEEEEEeCCceEE-EEEEEEEe
Q psy11701        157 IHWVHNGKPISQAPPNPR--RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVL  215 (745)
Q Consensus       157 v~W~~~g~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~-~~~~l~v~  215 (745)
                      ++|..+...........+  +...+..|.|..++..|+|.|.-++++..|... ..+.|.|.
T Consensus        46 ltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   46 LTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             EEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            566554444432222222  334677999999999999999999999988753 33555553

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.11  E-value=2.8  Score=31.50  Aligned_cols=52  Identities=17%  Similarity=0.222  Sum_probs=33.1

Q ss_pred             CCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEE-EeCCceEEEEEEEEE
Q psy11701        154 EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNV  214 (745)
Q Consensus       154 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~-~~~~g~~~~~~~l~v  214 (745)
                      .+.+.|+-.+....         .....+.....+..|+|.++|.| .+..-.......|.|
T Consensus        26 ~~~~~l~~~~~k~~---------~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   26 KPSLFLENPGKKSL---------ETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEECSSCEEE---------EESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             ChhheeeccCcccc---------ccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            34777776554332         33456677888899999999999 454444444444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA02982 hypothetical protein; Provisional

Probab=90.85  E-value=1.8  Score=38.34  Aligned_cols=122  Identities=15%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             eeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEe-ccCCCC---------------CCc----eeecCceEEEccCCCCCC
Q psy11701        134 FINAAEEETVTFECKASG-LPEPEIHWVHNGKP-ISQAPP---------------NPR----RKVGPNRITIENLRKSDT  192 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~-~~~~~~---------------~~~----~~~~~~~L~i~~v~~~d~  192 (745)
                      +.....|+++.|.|.... ..-....|+++... +.....               ...    .....++|+|.++..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            344567999999999643 33347899985422 221000               011    112357899999999999


Q ss_pred             EEEEEEEEeCCceEEE-EEEEEEeecCCeeeeCCCceEEecCc-eEEEEEEEeecCCCeEEEeeCCEEccCc
Q psy11701        193 GNYGCNATNSLGYVYK-DVYVNVLAHAPEITEAPKDEYTVDGK-TVVLTCRVFGAPKPEVNWIHNQKELTGG  262 (745)
Q Consensus       193 G~Y~C~~~~~~g~~~~-~~~l~v~~~~p~~~~~~~~~~v~~g~-~~~l~C~~~~~p~~~i~W~~~~~~~~~~  262 (745)
                      |=|+|.+....+..+. .-=+.|+...-.+       ...++. .-.+.|-+-+....-..|..+|....++
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVvttGg  177 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGIVTTGG  177 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeEEecCC
Confidence            9999999876544332 2112221100000       122333 3457888755433323898887644443

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=90.03  E-value=3.9  Score=31.46  Aligned_cols=85  Identities=19%  Similarity=0.203  Sum_probs=51.6

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS  115 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~  115 (745)
                      +-+.|+...|..|+++.+.|...-.-+..+-|--   .+. .........-..+.+.+++. | ..-.|.+.=. |....
T Consensus         6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET---~L~-k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~-g~Q~~   78 (91)
T PF03921_consen    6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLET---SLS-KTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCS-GEQSS   78 (91)
T ss_dssp             EEEESSEEEEETTEEEEEEEEESSSS-SEEEEES---SSE-EEEEEEETTEEEEEEEEE-S-C-EEEEEEEEET-TEEEE
T ss_pred             EEEECCccEECCCCCEEEEEcCCCCCCCcceEEE---ecC-CcccCCCCcEEEEEEEcccc-C-CeEEEEEEcC-CeEEE
Confidence            4578899999999999999998533222444521   111 00011112223677888886 4 5778988753 55666


Q ss_pred             EEEEEEEEecCe
Q psy11701        116 YSIDLSVLAAPY  127 (745)
Q Consensus       116 ~~~~l~V~~~p~  127 (745)
                      .+..|+|+.+|.
T Consensus        79 ~~~~ItVY~~Pe   90 (91)
T PF03921_consen   79 ASANITVYKPPE   90 (91)
T ss_dssp             EEEEEEEEB--S
T ss_pred             eEEeeEEeCCCC
Confidence            889999998874

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=89.59  E-value=6.6  Score=30.31  Aligned_cols=56  Identities=23%  Similarity=0.353  Sum_probs=37.8

Q ss_pred             cEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701         50 KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS  115 (745)
Q Consensus        50 ~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~  115 (745)
                      ...|.+.+.+. ...+.|+.||+.+.....      ...+.+.   ....|.|+-.+.+..|...+
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~------~~~~~~~---~~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP------GHQLFWQ---PDRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCC------CCeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence            56666676655 448999999999943221      2234332   35679999999888877663

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>KOG4806|consensus

Probab=89.55  E-value=18  Score=35.10  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=23.6

Q ss_pred             cCceeEEEecccccCcceeEEEEEecC
Q psy11701        459 KGESTTTEVDKFVPASKNFARVLAFNG  485 (745)
Q Consensus       459 ~~~~~~~~i~~L~~~~~Y~~~V~a~n~  485 (745)
                      .+..+.++|.+|.|++.|.|.|-.+|.
T Consensus       166 ig~~n~~~v~~L~pdt~Y~~dvFvv~~  192 (454)
T KOG4806|consen  166 IGNKNIFTVSDLKPDTQYYFDVFVVNI  192 (454)
T ss_pred             cCCccEEEhhhcCCCceEEEEEEEEec
Confidence            456668999999999999999999875

>PHA03282 envelope glycoprotein E; Provisional

Probab=89.35  E-value=20  Score=36.42  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=26.5

Q ss_pred             CcEEEEccCCCCCCEEEEEEEEeCCeee-EEEEEEEEEE
Q psy11701         86 GKSLIIKHVEFSDQGSYTCEVSNGVGEA-KSYSIDLSVL  123 (745)
Q Consensus        86 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~-~~~~~~l~V~  123 (745)
                      +.+|.|.+++.+|+|.|+..+.....+. ....+.|.|.
T Consensus       123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence            4569999999999999999985432222 2344556654

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=88.99  E-value=1.8  Score=42.28  Aligned_cols=21  Identities=19%  Similarity=0.513  Sum_probs=17.6

Q ss_pred             eEEEEEEEee-cCC-CeEEEEeC
Q psy11701        142 TVTFECKASG-LPE-PEIHWVHN  162 (745)
Q Consensus       142 ~~~l~C~~~~-~p~-~~v~W~~~  162 (745)
                      .++|+|.+.| +|. ..+.|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            5799999999 454 48999999

>PHA03283 envelope glycoprotein E; Provisional

Probab=88.84  E-value=24  Score=36.61  Aligned_cols=76  Identities=12%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             CceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecC-------C-eeeeCC------------CceEEecCceEEE
Q psy11701        179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA-------P-EITEAP------------KDEYTVDGKTVVL  238 (745)
Q Consensus       179 ~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~-------p-~~~~~~------------~~~~v~~g~~~~l  238 (745)
                      .+.|.|.+++.+++|.|+-..++..+.....+.|.|...+       | .....|            ......+|+++.+
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l  212 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL  212 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence            4689999999999999999999876644445666665411       1 111111            2234557999998


Q ss_pred             EEEEeecC-----CCeEEEee
Q psy11701        239 TCRVFGAP-----KPEVNWIH  254 (745)
Q Consensus       239 ~C~~~~~p-----~~~i~W~~  254 (745)
                      .-......     ...+.|+.
T Consensus       213 si~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        213 SVHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             eEEEeeccCCCCceEEEEEEE
Confidence            77765432     13688975

>PHA03282 envelope glycoprotein E; Provisional

Probab=88.79  E-value=30  Score=35.30  Aligned_cols=29  Identities=21%  Similarity=0.373  Sum_probs=23.9

Q ss_pred             ceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        174 RRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       174 ~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      +....+.+|.|.+++.+|+|.|+-.+...
T Consensus       118 rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~  146 (540)
T PHA03282        118 RVAVVNGTLVLREARETDSGMYVLSVSRA  146 (540)
T ss_pred             ceeEecceEEEeeccccCCceEEEEecCC
Confidence            44555788999999999999999997543

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=88.73  E-value=0.68  Score=42.82  Aligned_cols=46  Identities=30%  Similarity=0.458  Sum_probs=36.9

Q ss_pred             CCeEEEeeCCE-Ecc-CceEEEeecCcEEEcccCCCCCEEEEEEEEeC
Q psy11701        247 KPEVNWIHNQK-ELT-GGRYTILETGDLKITDVAFADSGEYTCFARNK  292 (745)
Q Consensus       247 ~~~i~W~~~~~-~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~  292 (745)
                      .|.+.|...++ .+. +....+...|.|.+.+....++|.|+|.....
T Consensus        12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            56899998644 444 34667788899999999999999999998754

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG1026|consensus

Probab=87.97  E-value=0.86  Score=49.64  Aligned_cols=159  Identities=18%  Similarity=0.246  Sum_probs=91.9

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEE
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS  121 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~  121 (745)
                      ...+..|..+++.|.+.+.|.+.+.|+.++............-..-...+.+        +.|.+.+..+... ..+.+.
T Consensus       201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~-~~v~~~  271 (774)
T KOG1026|consen  201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSN-PSILLV  271 (774)
T ss_pred             hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcC-ceeeeE
Confidence            5568899999999999999999999998776655332221111111122211        8999988777655 345555


Q ss_pred             EEecCeEEecCceeEeeCCCeEEEEEEE---eecCCCeEEEEeCCEeccCCCCCCceeecC-ceEEEccCCCCCCEEEEE
Q psy11701        122 VLAAPYFTVEPEFINAAEEETVTFECKA---SGLPEPEIHWVHNGKPISQAPPNPRRKVGP-NRITIENLRKSDTGNYGC  197 (745)
Q Consensus       122 V~~~p~~~~~~~~~~v~~G~~~~l~C~~---~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C  197 (745)
                      +..++.........    ++  .=.|..   .+.|.+...|..++..+.-.........+. .-+....-...+.|.|+|
T Consensus       272 ~~~p~~~~~~~~~~----~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~  345 (774)
T KOG1026|consen  272 VDLPKAEVLLCSPL----SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTL  345 (774)
T ss_pred             EecccccccCCCCc----cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCccee
Confidence            55554322221110    01  122433   356677889998887654222211111121 223233335677899999


Q ss_pred             EEEeCCceEEEEEEEEEe
Q psy11701        198 NATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       198 ~~~~~~g~~~~~~~l~v~  215 (745)
                      .+.+..|.........+.
T Consensus       346 ~~e~~~g~~~~r~~g~~~  363 (774)
T KOG1026|consen  346 FPELPGGKNYCRNPGGFM  363 (774)
T ss_pred             eecccCccccccCcCccc
Confidence            999988877665544444

>KOG1225|consensus

Probab=87.45  E-value=2.5  Score=44.33  Aligned_cols=147  Identities=15%  Similarity=0.114  Sum_probs=90.4

Q ss_pred             ecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEe-cCCCCCCCC
Q psy11701        414 IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAF-NGAYNGPPS  492 (745)
Q Consensus       414 ~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~-n~~G~g~~S  492 (745)
                      -+...+.+.|...      .....|...|.......... ...+ ......+.+..|+++++|..++.++ +..|..+.+
T Consensus       377 cs~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~r~-~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~  448 (525)
T KOG1225|consen  377 CSPPSLCIAGVGR------RRVTHCAGTYCPLGESGGDL-QGRV-PGDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKD  448 (525)
T ss_pred             cCCCceeeccccc------cccccccccccccccCCCcc-ceee-ccceeeeeeeeecCCcceeeehhhhhhhhccCCcc
Confidence            4555566666521      11234444443333222222 4555 6788889999999999999999887 334444333


Q ss_pred             cceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCC
Q psy11701        493 EIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL  572 (745)
Q Consensus       493 ~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  572 (745)
                      ..  .++....   +..+.+.....+++.+.|..|..   ...++.+.| ......-.....    + ....+.+...+|
T Consensus       449 ~~--~~~~~~~---~g~~~v~~~~~~s~e~~g~~~s~---~~~~~~~~~-~~~~~~~~~~~~----~-~~~~~~~~~~~l  514 (525)
T KOG1225|consen  449 KS--ETTVLCW---NGGLCVDGETESSLEVGGPCPSS---GTCGWEVRC-GPCGNDGGVNAE----P-PPECTSYDRTGL  514 (525)
T ss_pred             cc--cceEeec---CCceeeeeeeeccccccCCCCCc---cccceEEEe-eecCcccccccC----C-CCCCCCCCccCc
Confidence            21  2222222   35778888899999999999875   345677777 222221111111    2 236788999999


Q ss_pred             CCCccEEEEE
Q psy11701        573 EPSTKYRIHL  582 (745)
Q Consensus       573 ~p~t~Y~~~V  582 (745)
                      .|++.|.+.+
T Consensus       515 ~~c~~~~~~~  524 (525)
T KOG1225|consen  515 GPCTEYEVSV  524 (525)
T ss_pred             ccccceeccc
Confidence            9999999876

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=87.43  E-value=2.7  Score=43.61  Aligned_cols=75  Identities=20%  Similarity=0.131  Sum_probs=13.7

Q ss_pred             cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeE--------------------EecCceeEeeCCCeEEEE
Q psy11701         87 KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYF--------------------TVEPEFINAAEEETVTFE  146 (745)
Q Consensus        87 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~--------------------~~~~~~~~v~~G~~~~l~  146 (745)
                      +.|.|.+++.+|+|.|+-.+.+..+......+.|.|..+..-                    ...+......+|+++.|.
T Consensus        89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~  168 (439)
T PF02480_consen   89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS  168 (439)
T ss_dssp             ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred             CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence            569999999999999999998776666656677777642111                    112233445689999888


Q ss_pred             EEEee--cC-C---CeEEEEe
Q psy11701        147 CKASG--LP-E---PEIHWVH  161 (745)
Q Consensus       147 C~~~~--~p-~---~~v~W~~  161 (745)
                      -....  .. .   ..|.|++
T Consensus       169 v~l~~~~~d~~~f~~~i~W~~  189 (439)
T PF02480_consen  169 VHLQSEAHDDPPFSLEIDWYY  189 (439)
T ss_dssp             -EEEEEESSS--EEEEEEEEE
T ss_pred             EEEEeccCCCCCeeEEEEEEE
Confidence            77632  22 2   3899986

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PHA03052 Hypothetical protein; Provisional

Probab=87.24  E-value=2.1  Score=30.13  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=27.4

Q ss_pred             ccceeEecCCcEEEEEEE-eecC--CCeeEEEECCEec
Q psy11701         40 RKKEVALRNKKVELFCIF-GGTP--LPQTIWSKDGVPI   74 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~-~g~p--~~~v~W~~~~~~i   74 (745)
                      |+...+..|+.++|.|.+ -|.+  .+.|.|.-|+..+
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            366778899999999999 3333  4478899898887

>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology

Probab=87.06  E-value=6.5  Score=31.13  Aligned_cols=82  Identities=13%  Similarity=0.080  Sum_probs=50.6

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCcee-EEEEccCceeEEEecccccC----cceeE
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIR-ELIVNKGESTTTEVDKFVPA----SKNFA  478 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~~~----~~Y~~  478 (745)
                      +|+++.+.- .+...+..+|+++.....   -+.|.+.||.........- ......+....+.+......    ..|.|
T Consensus         1 ~~~nlsC~~-~~~~~m~CtW~~g~~~~~---~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v   76 (99)
T PF09240_consen    1 KPQNLSCFI-YNLEYMNCTWEPGKEAPP---DTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNV   76 (99)
T ss_dssp             S-EEEEEEE-ETTTEEEEEEECCTTCST---TEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEE
T ss_pred             CCeeCEEEE-ECCEEEEEEECCCCCCCC---cccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEE
Confidence            356788776 778999999998654432   3579999988764322221 12221233555666665552    36888


Q ss_pred             EEEEecCCCCC
Q psy11701        479 RVLAFNGAYNG  489 (745)
Q Consensus       479 ~V~a~n~~G~g  489 (745)
                      .|.+.+..|.-
T Consensus        77 ~V~~ss~~~~i   87 (99)
T PF09240_consen   77 CVNGSSSAGSI   87 (99)
T ss_dssp             EEEEEETTEEE
T ss_pred             EEEeccCCCcc
Confidence            88888876654

They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....

>PHA03281 envelope glycoprotein E; Provisional

Probab=86.03  E-value=33  Score=35.67  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=50.4

Q ss_pred             CcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecC--eE---EecC------------ceeEeeCCCeEEEEEE
Q psy11701         86 GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP--YF---TVEP------------EFINAAEEETVTFECK  148 (745)
Q Consensus        86 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p--~~---~~~~------------~~~~v~~G~~~~l~C~  148 (745)
                      .+.|.|.+++..++|.|+-......|...-..+.|+|...+  .+   .+.|            ......+|+++.|...
T Consensus       297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~  376 (642)
T PHA03281        297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH  376 (642)
T ss_pred             CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence            35799999999999999998886656555345677776522  11   1111            1123468999988887


Q ss_pred             Eeec--CC---CeEEEEe
Q psy11701        149 ASGL--PE---PEIHWVH  161 (745)
Q Consensus       149 ~~~~--p~---~~v~W~~  161 (745)
                      ....  ..   ..+.|++
T Consensus       377 L~s~ihD~pFsleI~Wyy  394 (642)
T PHA03281        377 LQYKIHDAPFDLLLEWLY  394 (642)
T ss_pred             EeeeccCCCceeEEEEEE
Confidence            7532  22   3899986

>PHA03286 envelope glycoprotein E; Provisional

Probab=85.97  E-value=43  Score=34.10  Aligned_cols=76  Identities=21%  Similarity=0.122  Sum_probs=50.1

Q ss_pred             CceEEEccCCCCCCEEEEEEEEeCCceEEEE-EEEEEeec----CCeee--eC------------CCceEEecCceEEEE
Q psy11701        179 PNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAH----APEIT--EA------------PKDEYTVDGKTVVLT  239 (745)
Q Consensus       179 ~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~~----~p~~~--~~------------~~~~~v~~g~~~~l~  239 (745)
                      .+.|.|.+++.+.+|.|+-..+|..|....+ +.|.|...    +|.+.  ..            .......+|+++.|.
T Consensus       126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS  205 (492)
T PHA03286        126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS  205 (492)
T ss_pred             CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence            4689999999999999999999887766555 45555321    22222  12            233455679999887


Q ss_pred             EEEeec-----CCCeEEEee
Q psy11701        240 CRVFGA-----PKPEVNWIH  254 (745)
Q Consensus       240 C~~~~~-----p~~~i~W~~  254 (745)
                      -.....     -...+.|+.
T Consensus       206 v~l~~~~~d~~Fsl~i~W~y  225 (492)
T PHA03286        206 VTAHLTNWAGAFSLEFRVLF  225 (492)
T ss_pred             EEEeecccCCCceEEEEEEE
Confidence            765522     123688965

>PHA03052 Hypothetical protein; Provisional

Probab=85.94  E-value=4.7  Score=28.46  Aligned_cols=36  Identities=28%  Similarity=0.536  Sum_probs=27.9

Q ss_pred             CceeEeeCCCeEEEEEEEe-e--cCCCeEEEEeCCEecc
Q psy11701        132 PEFINAAEEETVTFECKAS-G--LPEPEIHWVHNGKPIS  167 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~-~--~p~~~v~W~~~g~~~~  167 (745)
                      |....+..|..++|.|.+. |  ...+.+.|.-|+..+.
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            4556678899999999994 3  2345899999998883

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=85.29  E-value=3.7  Score=42.58  Aligned_cols=78  Identities=22%  Similarity=0.353  Sum_probs=13.5

Q ss_pred             ecCceEEEccCCCCCCEEEEEEEEeCCceEEEE-EEEEEeecCCe-------------------eeeCCCceEEecCceE
Q psy11701        177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPE-------------------ITEAPKDEYTVDGKTV  236 (745)
Q Consensus       177 ~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~~~p~-------------------~~~~~~~~~v~~g~~~  236 (745)
                      ...+.|.|.+++.+|+|.|+-..++..+..... +.|.|....+.                   .......+...+|+++
T Consensus        86 ~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf  165 (439)
T PF02480_consen   86 FNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTF  165 (439)
T ss_dssp             ------------------------------------------------------------SEEEEEE--SEEE--TT--E
T ss_pred             ecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcE
Confidence            345789999999999999999998776654433 45555432111                   1112234456679999


Q ss_pred             EEEEEEeec--C-C---CeEEEee
Q psy11701        237 VLTCRVFGA--P-K---PEVNWIH  254 (745)
Q Consensus       237 ~l~C~~~~~--p-~---~~i~W~~  254 (745)
                      .|.-.....  . .   ..|.|+.
T Consensus       166 ~~~v~l~~~~~d~~~f~~~i~W~~  189 (439)
T PF02480_consen  166 HLSVHLQSEAHDDPPFSLEIDWYY  189 (439)
T ss_dssp             E---EEEEEESSS--EEEEEEEEE
T ss_pred             EEeEEEEeccCCCCCeeEEEEEEE
Confidence            888776443  2 1   2688975

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=84.52  E-value=6.2  Score=43.14  Aligned_cols=127  Identities=11%  Similarity=0.111  Sum_probs=68.3

Q ss_pred             cCceeEEEecccccCcceeEEEEEecCCCCC-CCCcceEEe--CCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCcee
Q psy11701        459 KGESTTTEVDKFVPASKNFARVLAFNGAYNG-PPSEIISFV--TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLM  535 (745)
Q Consensus       459 ~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g-~~S~~~~~~--t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~  535 (745)
                      ......+.+.++-+ -+|.++|+|.|..|.. ++.....+.  -...+|..+..+....+ .-.+.|.|--|.. .-.+.
T Consensus       656 rt~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~i-t~~~~l~v~dPt~-~~d~~  732 (952)
T COG4733         656 RTSAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVII-TLVIRLVVGDPTG-AVDIT  732 (952)
T ss_pred             cccccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEE-EeeeeEEEecCCc-ceEEe
Confidence            34566788889877 5699999999998864 333233333  22223323333333322 2346678876652 11222


Q ss_pred             eEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701        536 GYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE  593 (745)
Q Consensus       536 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~  593 (745)
                      .=.+++......... ..    .+....-....-.+|.|+..|.|+++++|..|...+
T Consensus       733 ~sei~~s~~~d~~~~-Ar----~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~  785 (952)
T COG4733         733 STEIRSAVIADGNFQ-AR----SLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDK  785 (952)
T ss_pred             eeeeeeeccccchhH-Hh----hhhccccccccccCcCCCceEEEEeeeccccccccc
Confidence            222222221111110 00    011111122222689999999999999999998776

>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology

Probab=83.98  E-value=11  Score=29.88  Aligned_cols=87  Identities=14%  Similarity=0.094  Sum_probs=55.5

Q ss_pred             CCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCC----CccEEEEE
Q psy11701        507 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP----STKYRIHL  582 (745)
Q Consensus       507 p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p----~t~Y~~~V  582 (745)
                      |++|.....+...+.-+|.+..... +-+.|.++|+........+.....  ...+......+.....    +..|.|.|
T Consensus         2 ~~nlsC~~~~~~~m~CtW~~g~~~~-~~t~y~L~~~~~~~~~~~eC~~y~--~~~~~~~gC~~~~~~~~~~~~~~~~v~V   78 (99)
T PF09240_consen    2 PQNLSCFIYNLEYMNCTWEPGKEAP-PDTQYTLYYWYSPLEEEKECPHYS--KDSGTRIGCQFPVSEIDSSEFSQYNVCV   78 (99)
T ss_dssp             -EEEEEEEETTTEEEEEEECCTTCS-TTEEEEEEEEETTSSSEEEESEEE--ESTSSEEEEEEESCTT-TTTTSEEEEEE
T ss_pred             CeeCEEEEECCEEEEEEECCCCCCC-CcccEEEEEEcCCCCccccCCCcc--ccCCceeEEEecCCCccccccceEEEEE
Confidence            5788888888999999999865422 346899999987643322222111  1122234455554444    45899999


Q ss_pred             EEEecCCCCCCcce
Q psy11701        583 AGYTKAGDGAESKY  596 (745)
Q Consensus       583 ~a~n~~G~g~~S~~  596 (745)
                      .+.+..|.-.+...
T Consensus        79 ~~ss~~~~i~~~~~   92 (99)
T PF09240_consen   79 NGSSSAGSIRSSDQ   92 (99)
T ss_dssp             EEEETTEEEECEEE
T ss_pred             EeccCCCccCCcce
Confidence            99998887666443

They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=81.80  E-value=87  Score=34.43  Aligned_cols=402  Identities=13%  Similarity=0.080  Sum_probs=197.1

Q ss_pred             EecCCcEEEEEEEeecCCCe--eEEEE---CCEecCCCCCeEeccCCcEEEEccCCCCCCEEE--EEEEEeCCe----ee
Q psy11701         45 ALRNKKVELFCIFGGTPLPQ--TIWSK---DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSY--TCEVSNGVG----EA  113 (745)
Q Consensus        45 v~~G~~~~l~C~~~g~p~~~--v~W~~---~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y--~C~~~~~~g----~~  113 (745)
                      +..|+.+.|...+.+...-.  +.+.+   +|...      .....+ +-.+-+..+..+|.|  .|.|.+...    +.
T Consensus       203 ~i~~~eI~f~~~a~~~~g~~~LYKF~~i~~~G~~~------~~qdYs-t~n~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD  275 (667)
T PRK14081        203 LICDEELVFEVESVYEEDRTILYKFVKIDSDGKQT------CIQDYS-TKNIVSYKEKKSGDYKLLCLVKDMYSNNEFDD  275 (667)
T ss_pred             eecCcEEEEEEEEEeCCCceEEEEEEEECCCCCEE------EecCcc-ccceEEEEeCCCccEEEEEEEeccCccccccc
Confidence            55688888886664433222  23222   33211      111111 112223446788988  566654321    11


Q ss_pred             EEEEEEEEE--EecCeE---EecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC
Q psy11701        114 KSYSIDLSV--LAAPYF---TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR  188 (745)
Q Consensus       114 ~~~~~~l~V--~~~p~~---~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~  188 (745)
                      . ..+...|  ..++.+   ...... ....|+.+.|.+.+.|.....+...-.|..+....     -..+..+..   .
T Consensus       276 ~-~~l~y~Vk~~~~vkI~~~~~d~~s-~ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~-----Y~~~n~~~w---~  345 (667)
T PRK14081        276 R-AVLVYTVKPYKDIKIRNFTTDLSS-PQLTDTDIELKAVAEGGKELLYRFIIKGKESEDSG-----YIRNNIYTW---K  345 (667)
T ss_pred             c-eEEEEEEecCCCcEEEEEEEcCCC-CeecCceEEEEEEecCCCceEEEEEECCcEEeecc-----ccccceEEE---e
Confidence            1 2233333  233333   222222 24689999999999986655555444555443211     112233433   4


Q ss_pred             CCCCEEEEEEEEeCCce------EEEEEEEEEeec--CC-eee--eCCCceEEecCceEEEEEEEeecCCCeEE-E-eeC
Q psy11701        189 KSDTGNYGCNATNSLGY------VYKDVYVNVLAH--AP-EIT--EAPKDEYTVDGKTVVLTCRVFGAPKPEVN-W-IHN  255 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~------~~~~~~l~v~~~--~p-~~~--~~~~~~~v~~g~~~~l~C~~~~~p~~~i~-W-~~~  255 (745)
                      +..+|.|...+.-....      +...+...+...  .| .+.  ..+.......|+.+.+.|.+.+.....+. | .++
T Consensus       346 P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~n  425 (667)
T PRK14081        346 PKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKD  425 (667)
T ss_pred             eCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEEC
Confidence            45799999988643321      223345555442  23 332  22334566779999999999876544443 3 336


Q ss_pred             CEEccCceEEEeecCcEEEcccCCCCCEEEEEEEE--eCCce----EEEEEEEEEee-cce-ee--cCCCcEEEecCCeE
Q psy11701        256 QKELTGGRYTILETGDLKITDVAFADSGEYTCFAR--NKLGT----AQGSGSLTVKE-HTH-IT--DQPEDYEVEAGQSA  325 (745)
Q Consensus       256 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--n~~g~----~~~~~~l~v~~-~p~-~~--~~p~~~~~~~g~~~  325 (745)
                      |..+....+.  ....+.+.   +..+|.|+..+.  +....    ....+.+.|.. .|. +.  ..|.......|+.+
T Consensus       426 g~~ve~~~Y~--~~~~~~f~---P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i  500 (667)
T PRK14081        426 GKEEEKIDYG--KNNWVNFI---PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDI  500 (667)
T ss_pred             CEEEEEeecc--cccEEEEE---ECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEE
Confidence            6655432221  12233333   367899987664  33222    24566777765 232 11  22433446789999


Q ss_pred             EEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEE--eCCce----EEEEEEEEEe
Q psy11701        326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ--TELDF----IEAQATLTVQ  399 (745)
Q Consensus       326 ~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~--n~~g~----~~~~~~l~v~  399 (745)
                      ++.|.+.+....-+.+.-..+|......   .+  .....+.+.   +..+|.|+..+.  |....    ....+.+.|.
T Consensus       501 ~~~~~~~~~k~v~y~y~~~~NG~~v~~t---~Y--s~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~  572 (667)
T PRK14081        501 EIEVIIQNTKDVLIKYILKINGHKVEET---DY--IKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVR  572 (667)
T ss_pred             EEEEEEeCCCeEEEEEEEEECCEEEEEe---ec--cccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEc
Confidence            9999999865422333333566554211   11  112234443   445677876554  43322    2234555565


Q ss_pred             ccCCCCCCceeEEeec--CceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCccee
Q psy11701        400 VPLEAPSNFTLIQVID--AKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNF  477 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~--~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~  477 (745)
                      .+ .|+.+..+.....  .-.-.++|....   .+|.-.-|+......+    .|..+.- -+...-+++.....+ .|.
T Consensus       573 e~-~pi~nt~~~~~~~~~~~n~~~t~~~~~---~gg~~v~Yef~v~~~g----~w~~vq~-ys~k~~ysf~p~~~g-~Y~  642 (667)
T PRK14081        573 EA-LPITNTKIKTSKKKFKCNEEVTFSVKS---EGGKDVCYEFYIMEKG----EWKLVQK-YSRKNYYSFMPFNKG-KYK  642 (667)
T ss_pred             CC-CCceeeEEEeecceEEcCCeEEEEEEc---cCCCcEEEEEEEEECC----cEEEEee-ccccCceEEEeccCC-cEE
Confidence            33 3444544322011  112345565531   2344446776444322    2322222 233444554443333 366


Q ss_pred             EEEEEecCC
Q psy11701        478 ARVLAFNGA  486 (745)
Q Consensus       478 ~~V~a~n~~  486 (745)
                      +.|.+..-.
T Consensus       643 ilvl~ks~~  651 (667)
T PRK14081        643 VLVLCKSYY  651 (667)
T ss_pred             EEEEEeccc
Confidence            666665443

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=81.30  E-value=1.5  Score=46.55  Aligned_cols=259  Identities=12%  Similarity=0.083  Sum_probs=25.3

Q ss_pred             eEEEEEEEeecCCCeEEEEeCCEeccCCC-CCCceeecCceEEEccCCCCC-CEEEEEEEE--eCC-ceEEEEEEEEEee
Q psy11701        142 TVTFECKASGLPEPEIHWVHNGKPISQAP-PNPRRKVGPNRITIENLRKSD-TGNYGCNAT--NSL-GYVYKDVYVNVLA  216 (745)
Q Consensus       142 ~~~l~C~~~~~p~~~v~W~~~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~--~~~-g~~~~~~~l~v~~  216 (745)
                      .+.|.|...  -...+.|..-........ .... ......|.|..-.... ...|...+.  ... ......+.|.|..
T Consensus         2 ~~~~~C~~~--~~~~y~W~~~~~~~~~~~~~~~~-~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~   78 (440)
T PF02010_consen    2 HVSLNCNDA--STVTYNWTVFSGPSNSIVQDMDN-SSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEP   78 (440)
T ss_dssp             ----------------BEEEEES-TT-EEESTTT---SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE-
T ss_pred             Ccccccccc--cceEEEEEEEecCCcCccccccc-cCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEee
Confidence            356788332  455889986321111000 0000 2334578888766632 235666666  222 2244556777765


Q ss_pred             cCCeeeeCC-CceEEecCceEEEEEEEeecCC-------CeEEEeeCCEEcc--C------ceEEEeecCcEEEcccCCC
Q psy11701        217 HAPEITEAP-KDEYTVDGKTVVLTCRVFGAPK-------PEVNWIHNQKELT--G------GRYTILETGDLKITDVAFA  280 (745)
Q Consensus       217 ~~p~~~~~~-~~~~v~~g~~~~l~C~~~~~p~-------~~i~W~~~~~~~~--~------~~~~~~~~~~l~i~~~~~~  280 (745)
                      .+......- ....+..++.+.|.....-.|.       ..+.|........  .      ..........+.|......
T Consensus        79 s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~  158 (440)
T PF02010_consen   79 SPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLS  158 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcC
Confidence            333322221 2223333456676654333331       3577876433222  0      0111122345666544433


Q ss_pred             CCEEEEEEEE--eCCc-eEEEEEEEEEee--cceeecCCC---cEEEecCCeEEEEEEEEecC--CCCcEEEEee-----
Q psy11701        281 DSGEYTCFAR--NKLG-TAQGSGSLTVKE--HTHITDQPE---DYEVEAGQSATFRCNAVSDP--SLKLSIVWLR-----  345 (745)
Q Consensus       281 d~G~Y~C~~~--n~~g-~~~~~~~l~v~~--~p~~~~~p~---~~~~~~g~~~~l~C~~~~~~--~~~~~i~W~~-----  345 (745)
                      ....|..++.  ...+ .......+.+..  +|.+.....   ...+..++.+.|.......+  .....+.|..     
T Consensus       159 ~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~  238 (440)
T PF02010_consen  159 PGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDG  238 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccc
Confidence            2222555443  3333 223334444432  222211111   12256666666665555432  3347788886     


Q ss_pred             ---CCeeccCCCCCeEEEcCCeEEEEec--CCCCCCEEEEEEEEeCCceE-EEEEEEEEeccCC
Q psy11701        346 ---GSEPIDFESEPRFVQSNDYSLTVTK--SSELDSGQYTCRAQTELDFI-EAQATLTVQVPLE  403 (745)
Q Consensus       346 ---~~~~~~~~~~~~~~~~~~~~l~i~~--~~~~~~g~y~c~a~n~~g~~-~~~~~l~v~~pp~  403 (745)
                         ....+...............|.|..  +.....+.+++.+.+..+.. .+...+.+..||.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~  302 (440)
T PF02010_consen  239 VSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPS  302 (440)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               0111100001111112223455553  34444556666776655543 4556666654443

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=80.57  E-value=46  Score=30.39  Aligned_cols=94  Identities=15%  Similarity=0.305  Sum_probs=48.4

Q ss_pred             eEEEeeCCEEccCce----EEEeecC------cEEEc-ccCCCCCEEEEEEEEeCCce-EEE----EEEEEEeecceeec
Q psy11701        249 EVNWIHNQKELTGGR----YTILETG------DLKIT-DVAFADSGEYTCFARNKLGT-AQG----SGSLTVKEHTHITD  312 (745)
Q Consensus       249 ~i~W~~~~~~~~~~~----~~~~~~~------~l~i~-~~~~~d~G~Y~C~~~n~~g~-~~~----~~~l~v~~~p~~~~  312 (745)
                      .+.|+.|+..+....    .....+|      +|++. +......=..+|.+.-.... ...    ...-.|..+|.+. 
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs-   86 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS-   86 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE-
Confidence            578999888765221    1112223      35552 22223345789988633222 212    2222233333222 


Q ss_pred             CCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeec
Q psy11701        313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI  350 (745)
Q Consensus       313 ~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~  350 (745)
                          +.+..|   ...|.+..-|.....+.|.-++...
T Consensus        87 ----v~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~  117 (211)
T PF02124_consen   87 ----VRFEDG---YAVCTARCVPRGNVTLRWSVGDDPS  117 (211)
T ss_pred             ----EEecCC---EEEEEcceeeCCCeEEEEEECCccC
Confidence                223333   4458888777655899999877653

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	745
1cfb_A	205	Crystal Structure Of Tandem Type Iii Fibronectin Do		5e-28
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		5e-27
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		1e-17
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		7e-09
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		2e-05
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		5e-26
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		5e-12
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		2e-07
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		2e-25
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		3e-23
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		5e-25
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		4e-18
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-24
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		5e-23
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		1e-11
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		5e-23
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-13
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-22
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-08
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		2e-21
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-09
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-20
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		4e-14
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		4e-08
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-19
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-13
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		8e-09
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		2e-19
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		6e-12
3kld_A	384	Ptprg Cntn4 Complex Length = 384		2e-19
3kld_A	384	Ptprg Cntn4 Complex Length = 384		7e-12
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		3e-19
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		1e-08
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-18
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-09
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		3e-18
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		2e-09
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		6e-18
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		3e-09
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		7e-18
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		3e-09
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		2e-16
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		7e-05
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		2e-16
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		7e-05
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		4e-16
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		6e-05
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		8e-16
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		8e-05
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		8e-16
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		8e-05
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		1e-15
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		3e-04
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-15
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-13
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-15
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-12
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		4e-15
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-15
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		8e-15
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-14
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		1e-06
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		6e-14
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		6e-14
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		6e-14
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		7e-14
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		1e-06
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		1e-13
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		6e-08
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		1e-13
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		5e-06
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		3e-13
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		2e-05
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		6e-13
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		2e-05
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		2e-12
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		1e-05
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		3e-12
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-12
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-11
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-12
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-11
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		1e-11
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		2e-05
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		1e-11
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-11
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-09
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-09
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		2e-11
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		7e-10
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		1e-08
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		5e-11
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		2e-09
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		2e-10
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		2e-10
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		5e-10
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		2e-09
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-09
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-09
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		2e-09
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		6e-04
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-09
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		1e-08
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-09
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		1e-08
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		3e-09
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		3e-09
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		4e-09
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		5e-04
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		5e-08
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		6e-08
1f97_A	212	Soluble Part Of The Junction Adhesion Molecule From		1e-07
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		2e-07
2y23_A	312	Crystal Structure Of The Myomesin Domains My9-My11		3e-07
2xy2_A	189	Crystal Structure Of Ncam2 Ig1-2 Length = 189		3e-07
2xy2_A	189	Crystal Structure Of Ncam2 Ig1-2 Length = 189		9e-04
1uen_A	125	Solution Structure Of The Third Fibronectin Iii Dom		5e-07
1qg3_A	195	Crystal Structure Of A Tandem Pair Of Fibronectin T		5e-07
3f7q_A	234	First Pair Of Fibronectin Type Iii Domains And Part		6e-07
3f7p_C	248	Crystal Structure Of A Complex Between Integrin Bet		6e-07
3f7r_A	249	First Pair Of Fibronectin Type Iii Domains And Part		7e-07
2c5d_C	195	Structure Of A Minimal Gas6-Axl Complex Length = 19		8e-07
2c5d_C	195	Structure Of A Minimal Gas6-Axl Complex Length = 19		7e-04
2fcb_A	173	Human Fc Gamma Receptor Iib Ectodomain (Cd32) Lengt		1e-06
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-06
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		2e-06
2wv3_A	190	Neuroplastin-55 Binds To And Signals Through The Fi		3e-06
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		3e-06
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		3e-05
3s97_C	201	Ptprz Cntn1 Complex Length = 201		3e-06
2r15_A	212	Crystal Structure Of The Myomesin Domains 12 And 13		3e-06
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		3e-06
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		5e-06
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		1e-05
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		4e-06
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		4e-06
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		2e-04
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		8e-06
3ry6_C	167	Complex Of Fcgammariia (Cd32) And The Fc Of Human I		8e-06
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		9e-06
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		1e-05
3d5o_F	177	Structural Recognition And Functional Activation Of		1e-05
3ry5_A	170	Three-Dimensional Structure Of Glycosylated Fcgamma		1e-05
1h9v_A	172	Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic L		1e-05
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		2e-05
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		2e-05
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		6e-05
1fcg_A	174	Ectodomain Of Human Fc Gamma Receptor, Fcgriia Leng		3e-05
3ry4_A	170	1.5 Angstrom Resolution Structure Of Glycosylated F		3e-05
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		4e-05
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		1e-04
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		4e-05
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		5e-05
1epf_A	191	Crystal Structure Of The Two N-Terminal Immunoglobu		4e-05
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		4e-05
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		5e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		7e-05
2edx_A	134	Solution Structures Of The Fn3 Domain Of Human Rece		1e-04
1x5l_A	111	Solution Structure Of The Second Fn3 Domain Of Eph		1e-04
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		2e-04
3caf_A	100	Crystal Structure Of Hfgfr2 D2 Domain Length = 100		2e-04
2djs_A	108	Solution Structures Of The Fn3 Domain Of Human Ephr		2e-04
1wvz_A	104	Solution Structure Of The D2 Domain Of The Fibrobla		2e-04
3dar_A	105	Crystal Structure Of D2 Domain From Human Fgfr2 Len		2e-04
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		4e-04
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		4e-04
2dl9_A	103	Solution Structure Of The Ig-Like Domain Of Human L		4e-04
4i0k_A	222	Crystal Structure Of Murine B7-H3 Extracellular Dom		4e-04
3rjd_A	262	Crystal Structure Of Fc Ri And Its Implication To H		4e-04
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		5e-04
3mtr_A	215	Crystal Structure Of The Ig5-Fn1 Tandem Of Human Nc		5e-04

>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains From Drosophila Neuroglian At 2.0 Angstroms Length = 205

Iteration: 1
 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 10/173 (5%)
Query: 534 LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593
           ++ Y I++     T   P      Y   P T S+ +  + P   Y   +  + K G    
Sbjct: 35  ILHYTIQF----NTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPP 90
Query: 594 SKYLFY------VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTG 647
           S +         VPFKNPDNV G+G+ PNNLVISWT MPEIEHNAP+F Y + W+R    
Sbjct: 91  SAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPA 150
Query: 648 EAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGE 700
            AW  +++ DWRQ+ +V+A+QPTF  Y IKVV      +   +  E++   GE
Sbjct: 151 AAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGE 203

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 2/177 (1%)
Query: 39  TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSD 98
           T   ++ LR   + L CI  G P P   W K G  + PSD+    N+ K+L I +V   D
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAKFENFNKALRITNVSEED 286
Query: 99  QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIH 158
            G Y C  SN +G  + ++I + V AAPY+  EP+ +  A  E     C+A+G P+P + 
Sbjct: 287 SGEYFCLASNKMGSIR-HTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ 345
Query: 159 WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
           W+ NG+P+  APPNP R+V  + I   + + S    Y CN +N  GY+  + +V+VL
Sbjct: 346 WMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 152/369 (41%), Gaps = 31/369 (8%)
Query: 55  CIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSD----QGSYTCEVSN 108
           C   G P P   W+++    N +   R+S      +L+I           +G Y C   N
Sbjct: 39  CEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARN 98
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKAS-GLPEPEIHWVHNG-KP 165
             G A S  I L V  +P +  E  + +   E   +T +C    GLP P I W+ +  +P
Sbjct: 99  KFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP 158
Query: 166 ISQAPPNPRRKVGPN-RITIENLRKSDTG-NYGCNATNSLGYVYKD---VYVNVLAHAPE 220
           I+Q   + R   G N  +   N+   D   +Y CNA     +  +      + VL     
Sbjct: 159 ITQ---DKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV 215
Query: 221 ITEAPKDEY---------TVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD 271
               P   Y          + G  ++L C   G P P++ W     +L   +        
Sbjct: 216 AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK 275
Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
            L+IT+V+  DSGEY C A NK+G+ + + S+ VK   +  D+P++  +  G+     C 
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR 335
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDS-GQYTCRAQTELDF 389
           A  +P  K ++ W+   EP+   + P   +       + + +++ S   Y C    E  +
Sbjct: 336 ANGNP--KPTVQWMVNGEPLQ-SAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGY 392
Query: 390 IEAQATLTV 398
           + A A ++V
Sbjct: 393 LLANAFVSV 401

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 117/297 (39%), Gaps = 30/297 (10%)
Query: 140 EETVTFECKASGLPEPEIHWVHNGK--PISQAPP-NPRRKVGPNRITIENLRKSD--TGN 194
            + +  EC+A G P P  HW  N +   I++ P  + RR+ G   I   +  + +   G 
Sbjct: 32  RDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGE 91
Query: 195 YGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCR-VFGAPKPEVNW 252
           Y C A N  G    +     ++ +P   +   D   V +G  + L C    G P P + W
Sbjct: 92  YQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFW 151
Query: 253 IHNQKE--LTGGRYTILETGDLKITDVAFAD-SGEYTCFARNKL-GTAQGSGSLTVK--- 305
           + +  E      R +    GDL  ++V   D   +Y+C AR     T Q     T+K   
Sbjct: 152 MSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLT 211
Query: 306 -----EHTHITDQPE----DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
                E T     P+       V  G      C A   P+    I W +     D  S+ 
Sbjct: 212 TRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT--PDIAWYKKGG--DLPSDK 267
Query: 357 RFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP---LEAPSNFTL 410
              ++ + +L +T  SE DSG+Y C A  ++  I    ++ V+     L+ P N  L
Sbjct: 268 AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLIL 324

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 29/208 (13%)
Query: 213 NVLAHAPEITEAPKDEYTVDGK-TVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILE 268
           N L   P IT+    ++ VD +  +++ C   G P P  +W  N +        R ++  
Sbjct: 11  NELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRR 70
Query: 269 TGDLKITDVAFAD-----SGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP-------ED 316
                + D           GEY CFARNK GTA     L+ +    ++  P       + 
Sbjct: 71  RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTA-----LSNRIRLQVSKSPLWPKENLDP 125
Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIV-WLRGS-EPIDFESEPRFVQSNDYSLTVTKSSEL 374
             V+ G   T +CN    P L   ++ W+  S EPI    + R  Q ++  L  +     
Sbjct: 126 VVVQEGAPLTLQCNP--PPGLPSPVIFWMSSSMEPI--TQDKRVSQGHNGDLYFSNVMLQ 181
Query: 375 D-SGQYTCRAQTELDF-IEAQATLTVQV 400
           D    Y+C A+      I+ +   T++V
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLKV 209

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 10/187 (5%)
Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPIN--PSDRISQGNY--GKS 88
           P  QYV+ K  +A       ++C++G  P+    + K+G  +N  P DRI++ N   GK 
Sbjct: 213 PVPQYVS-KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 271
Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE-FINAAEEETVTFEC 147
           L+ K     D+G YTCEV NGVG+ + +S+ L+V++AP +  +PE  I   + + VT  C
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPC 331
Query: 148 KASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
           K +GLP P + W HN KP+S      R  V  + + I+ ++  D G YGC ATN  G  Y
Sbjct: 332 KVTGLPAPNVVWSHNAKPLSGG----RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKY 387
Query: 208 KDVYVNV 214
            +  V V
Sbjct: 388 FETLVQV 394

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 108/275 (39%), Gaps = 29/275 (10%)
Query: 46  LRNKKVELFCIF-GGTPLPQTIWSKDGVPINPS-------DRISQGNYGKSL--IIKHVE 95
           +  +  +L C+     P P   W K     +P+        RI+ G  G     I+   +
Sbjct: 113 IEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKED 172
Query: 96  FSDQGSYTCEVSNGVGEAKSYSIDLSVLAA------------PYFTVEPEFINAAEEETV 143
            SD   Y C   N   + +   ++  +               P + V  + +  A + T+
Sbjct: 173 VSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY-VSKDMMAKAGDVTM 231
Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNP---RRKVGPNRITIENLRKSDTGNYGCNAT 200
            + C     P    ++  NGK ++  P +      +    R+  +     D G Y C   
Sbjct: 232 IY-CMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290
Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCRVFGAPKPEVNWIHNQKEL 259
           N +G   K      +  AP+  + P+    V  G+ V + C+V G P P V W HN K L
Sbjct: 291 NGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL 350
Query: 260 TGGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
           +GGR T+ ++G L I  V   D G Y C A N+ G
Sbjct: 351 SGGRATVTDSG-LVIKGVKNGDKGYYGCRATNEHG 384

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 140/386 (36%), Gaps = 60/386 (15%)
Query: 43  EVALR-NKKVELFCIFGGTPLP-QTIWSKDGVPIN-----PSDRISQGNYGKSLIIKHVE 95
           EV  R N    L CI  G     +  W KDG   N      + R  +G    SL+    +
Sbjct: 15  EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG----SLVFLRPQ 70
Query: 96  FSDQGSYTCEVSNGVGEAKSYSIDLS---VLAAPYFTVEPEFINAAEEETVTFECKA-SG 151
            SD+G Y C      G A S  I      ++A+P  T E   I   E      +C   + 
Sbjct: 71  ASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI---EGRPFQLDCVLPNA 127
Query: 152 LPEPEIHWVHNGKPISQAPPNP-------RRKVGPNR------ITIENLRKSDTGNYGCN 198
            P+P I W    K +S A PN        R   GP+       +T E++  SD   Y C 
Sbjct: 128 YPKPLITW---KKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV--SDIYKYVCT 182
Query: 199 ATNS--------LGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVLTCRVFGAPKP 248
           A N+        + Y  K V  +   +   P      KD     G   ++ C     P  
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMG 242
Query: 249 EVNWIHNQKELTGG------RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQG-SGS 301
             N+  N K++ G       R+       L        D G YTC   N +G  Q  S  
Sbjct: 243 YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLK 302
Query: 302 LTVKEHTHITDQPED-YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ 360
           LTV        +PE    V+ GQ  T  C     P+   ++VW   ++P+   S  R   
Sbjct: 303 LTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPA--PNVVWSHNAKPL---SGGRATV 357
Query: 361 SNDYSLTVTKSSELDSGQYTCRAQTE 386
           + D  L +      D G Y CRA  E
Sbjct: 358 T-DSGLVIKGVKNGDKGYYGCRATNE 382

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 162/374 (43%), Gaps = 35/374 (9%)
Query: 51  VELFCIFGGTPLPQTIWSKDGVPIN--PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
           + L C   GTP  +  W K+   +   P+ ++   N   SL+I  V+ SD G YTC+  N
Sbjct: 23  ITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN 82
Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEE--ET----VTFECKASGLPEPEIHWVHN 162
            VG   S     +VL      + P F    ++  ET    V FEC+ +G    ++ W  +
Sbjct: 83  SVGAVASS----AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKD 138
Query: 163 GKPISQAPPNPRRKVGPNRITIENLR--KSDTGNYGCNATNSLGYVYKDVYVNVLAHA-- 218
           G+ + +   N +     N  T++ L+  +S  G Y C+A+N LG       + +  H   
Sbjct: 139 GE-LLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVP 197
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRY--TILE-TGDLKI 274
           P     P       G++    C V G    ++ W  + +E+  GG Y  T++E T  L +
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 257
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYE-VEAGQSATFRCNAVS 333
             V   D+G+YTC+A N  G    S  L V+E      + E    V+  +   + C    
Sbjct: 258 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG 317
Query: 334 DPSLKLSIVWLRGSEPIDFESEPR--FVQS----NDYSLTVTKSSELDSGQYTCRAQTEL 387
            P +K  ++W +    I   S+ R  FV+S      Y+L+V      DSG YTC A    
Sbjct: 318 SPEIK--VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE-----DSGDYTCEAHNAA 370
Query: 388 DFIEAQATLTVQVP 401
               +  +L V+ P
Sbjct: 371 GSASSSTSLKVKEP 384

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 121/290 (41%), Gaps = 13/290 (4%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-KVGPNR 181
           +  PYF    E + AA  E +T +CK  G PE  I W      +  AP    + K     
Sbjct: 3   MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVLT 239
           + I  +  SD G Y C A NS+G V     + +      P      KD +   G  V   
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 240 CRVFGAPKPEVNWIHNQKELTGGRYT----ILETGDLKITDVAFADSGEYTCFARNKLGT 295
           CR+ G+   +V+W  + + L          I     L+I     +  G+Y C A N LGT
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182
Query: 296 AQGSGSLTVKEHT---HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF 352
           A  S  LT+ EH        +P   ++  G+S TF+C+      +K  I W + +  I  
Sbjct: 183 ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK--ITWAKDNREIRP 240
Query: 353 ESEPRF-VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
               +  +  N  +LTV K ++ D+GQYTC A          A L VQ P
Sbjct: 241 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 290

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 125/281 (44%), Gaps = 20/281 (7%)
Query: 41  KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEF 96
           K ++ +        C   G P P+  W+K G  +N S R     +    G  L I+ +  
Sbjct: 14  KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRT 72
Query: 97  -SDQGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECK 148
             D+  Y C   N VGE   ++  L+VL         P   + P+        T T  C 
Sbjct: 73  PRDENVYECVAQNSVGEITVHA-KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCA 131
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
           ASG P+PEI W  +  P+  +  N R +++    + IE+  ++D G Y C ATNS G  Y
Sbjct: 132 ASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRY 191
Query: 208 K---DVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY 264
               ++YV V   AP  +  P     + G  V +TC   G+P P V W+   ++LT    
Sbjct: 192 SSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD 251
Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             +    L++TDV   DS  YTC A + LG  +    +TVK
Sbjct: 252 MPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVK 290

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 121/296 (40%), Gaps = 34/296 (11%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-------KVG 178
           P F  EP+          +F C+A+G P+P + W   GK +     N +R       +  
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-----NSQRFETIEFDESA 61
Query: 179 PNRITIENLRK-SDTGNYGCNATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTV 231
              + I+ LR   D   Y C A NS+G +     + VL         P I   P+ +   
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHN----QKELTGGRYTILETGDLKITDVAFADSGEYTC 287
             +T  + C   G P PE+ W  +        + GR   L +G L+I      D G+Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 288 FARNKLGTAQGS-GSLTVKEHT---HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
            A N  G    S  +L V+        +  P  +E+  G +    C AV  P   +   W
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVK--W 239
Query: 344 LRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           ++G+E +  E +   V  N   LT  K    DS  YTC A + L  IEA A +TV+
Sbjct: 240 MQGAEDLTPEDD-MPVGRNVLELTDVK----DSANYTCVAMSSLGVIEAVAQITVK 290

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 159/377 (42%), Gaps = 25/377 (6%)
Query: 44  VALRNKKVELFCIF-GGTPLPQTIWSKDGV--PINPSDRISQGNYGKSLIIKHVEFS--- 97
           V +R   V L C       +P   W KDG+   +   DR  Q   G SL+I+++  S   
Sbjct: 32  VTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG-SLLIQNILHSRHH 90
Query: 98  --DQGSYTCEVSNG-VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPE 154
             D+G Y CE S G  G   S +  + V     F  + E I A   +TV  +C+  G P 
Sbjct: 91  KPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPM 150
Query: 155 PEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLG-YVYKDVYV 212
           P IHW  N + ++  P + R  V P+  + I  L+  D+G Y C+A N        +  V
Sbjct: 151 PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEV 210
Query: 213 NVLA-----HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQK--ELTGGRYT 265
            +L+           + P +   ++GK  VL C V G P P   W+  ++  +L   +Y+
Sbjct: 211 RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS 270
Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSA 325
           +L   +L I++V   DSG YTC    K      S  LTV       + P +         
Sbjct: 271 LLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDI 330
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV-QSNDYSLTVTKSSELDSGQYTCRAQ 384
            F C     P    ++ W++  + +      + V  SN   L V KS   D G Y C A+
Sbjct: 331 EFECAVSGKPV--PTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKS---DEGFYQCVAE 385
Query: 385 TELDFIEAQATLTVQVP 401
            E    ++ A L V  P
Sbjct: 386 NEAGNAQSSAQLIVPKP 402

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 152/371 (40%), Gaps = 30/371 (8%)
Query: 49  KKVELFCIFGGTPLPQTIWSKDG--VPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEV 106
           +KV L C     P     W  +G  + + P  R  +   G  +I   V+  D GSY C  
Sbjct: 23  EKVTLTCRARANPPATYRWKMNGTELKMGPDSRY-RLVAGDLVISNPVKAKDAGSYQCVA 81
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKAS-GLPEPEIHWVHNGK 164
           +N  G   S    L       F+ E  + +   E   V F C      P     W+ N  
Sbjct: 82  TNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEF 141
Query: 165 PISQAPPNPRRKVGPN--RITIENLRKSDTGNYGCNATNSLGYVYKDVYV---------- 212
           P +  P + RR V      + I     SD GNY C AT+ + ++ K V+           
Sbjct: 142 P-NFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200
Query: 213 NVLAHAPEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD 271
           +   +AP I  + P D Y + G+ V L C  FG P P++ W    ++L G + +   + +
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW----RKLDGSQTSKWLSSE 256
Query: 272 --LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
             L I +V F D G Y C A N  G     G + +       D   D E + G    + C
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSC 316
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
            A   P  + ++ WLR  +P+  ++    ++ +   L  +K    DSG Y C A+ +   
Sbjct: 317 VASGKP--RPAVRWLRDGQPLASQNR---IEVSGGELRFSKLVLEDSGMYQCVAENKHGT 371
Query: 390 IEAQATLTVQV 400
           + A A LTVQ 
Sbjct: 372 VYASAELTVQA 382

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 108/286 (37%), Gaps = 40/286 (13%)
Query: 126 PYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
           P F  +P    F   + EE VT  C+A   P     W  NG  +   P +  R V  + +
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCR 241
               ++  D G+Y C ATN+ G V             E +   +D   + +G  V+ TC 
Sbjct: 65  ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTC- 123
Query: 242 VFGAPKPE-----VNWIHNQ----KELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
              +P P        W+ N+        G R+    TG+L I     +D G Y+CFA + 
Sbjct: 124 ---SPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 180
Query: 293 LGTAQGSG-------SLTVKEHTHITDQ-----PEDYEVEAGQSATFRCNAVSDPSLKLS 340
           +     S        SL  ++            P D     GQ  T  C A  +P  ++ 
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240
Query: 341 IVWLRGSEPIDF-ESEPRF-VQSNDYSLTVTKSSELDSGQYTCRAQ 384
              L GS+   +  SEP   +Q+ D+          D G Y C A+
Sbjct: 241 WRKLDGSQTSKWLSSEPLLHIQNVDFE---------DEGTYECEAE 277

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 1/173 (0%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI 184
           AP  T   E ++A  EE  TF C     P+PEI W  N   I         +     +TI
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTI 66
Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG 244
            ++  SD G Y C A N +G   +      +   P+IT  P +   ++G   VL C   G
Sbjct: 67  LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMG 126
Query: 245 APKPEVNWIHNQKELT-GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTA 296
            PKP V+WI     L    R  +LE+G L+I +V   D+G+Y C A+N LGTA
Sbjct: 127 NPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 8/177 (4%)
Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQ--KELTGGRYTILETGD- 271
           L  AP IT   +    +  +     C V   P+PE++W  N+   +L   RY+I E G  
Sbjct: 4   LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63
Query: 272 LKITDVAFADSGEYTCFARNKLGTA-QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
           L I  V  +D G Y C A N +G A +  G+L VK    IT  P + ++  G  A   C 
Sbjct: 64  LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT 123
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL 387
            + +P  K S+ W++G   +   S    ++S   SL +    + D+GQY C A+  L
Sbjct: 124 TMGNP--KPSVSWIKGDSALRENSRIAVLESG--SLRIHNVQKEDAGQYRCVAKNSL 176

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 152/370 (41%), Gaps = 40/370 (10%)
Query: 51  VELFCIFGGTPLPQTIW--------SKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSY 102
           + L C   G P+P   W         K  V +N  DR+ Q     +LIIK     D G Y
Sbjct: 266 MALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLN--DRVKQ--VSGTLIIKDAVVEDSGKY 321
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN 162
            C V+N VG  +S    L+V A     ++P            F C+ +G P   + W+ +
Sbjct: 322 LCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD 380
Query: 163 GKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL--GYVYKDVYVNVLAHAPE 220
           GK I  +    R         IE+++K D G Y C   N         ++ +      P 
Sbjct: 381 GKAIGHSESVLR---------IESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPV 431
Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGD--- 271
           I +A ++E    G +V L C   G P PE++W      I N      G+Y  +  GD   
Sbjct: 432 IRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTV-NGDVVS 490
Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
            L IT V   D G Y C A++K+G A+ S  L V    +I  Q E   + AG++    C 
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCP 549
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
               P    SIVW R +  +    + + V  N   +        D   YTC A+ +  + 
Sbjct: 550 VAGYPI--DSIVWERDNRALPINRKQK-VFPNGTLIIENVERNSDQATYTCVAKNQEGY- 605
Query: 391 EAQATLTVQV 400
            A+ +L VQV
Sbjct: 606 SARGSLEVQV 615

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 122/317 (38%), Gaps = 45/317 (14%)
Query: 125 APYFTVEP----EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
            P F  EP    +F N+   E    ECKASG P PEI W+ +        P  R+     
Sbjct: 38  GPVFLKEPTNRIDFSNSTGAE---IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 94
Query: 181 RITIENLRKSDTGN------YGCNATNSLG-YVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
           ++     R  D         Y C A N  G  + +DV+V  +       +  K E+ + G
Sbjct: 95  KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK-EHVIRG 153
Query: 234 KTVVLTCRV--FGAPKPEVNWIHNQKELT-------GGRYTILETGDLKITDVAFADS-G 283
            + V+ C +  F A   EV   H  +E          G+Y +L +G+L I +V   D   
Sbjct: 154 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 213
Query: 284 EYTCFARNKLG----TAQGSGSLTVKEHTH------ITDQPEDYEVEAGQSATFRCNAVS 333
            Y C  +++L      +   G L + E         ++    D +  +G S      A+ 
Sbjct: 214 SYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTM----ALL 269
Query: 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQYTCRAQTEL 387
            P+    +   R  + I+  +  + V  ND       +L +  +   DSG+Y C     +
Sbjct: 270 CPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 329
Query: 388 DFIEAQATLTVQVPLEA 404
                +  LTV  PL A
Sbjct: 330 GGESVETVLTVTAPLSA 346

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 151/369 (40%), Gaps = 26/369 (7%)
Query: 49  KKVELFCIFGGTPLPQTIWSKDG--VPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEV 106
           ++V L C    +P     W  +G  + + P  R  Q   G  +I+   +  D G Y C  
Sbjct: 22  EQVLLACRARASPPATYRWKMNGTEMKLEPGSR-HQLVGGNLVIMNPTKAQDAGVYQCLA 80
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKA-SGLPEPEIHWVHNGK 164
           SN VG   S    L       F+ E  + + A E   V   C   +  P     W+ N  
Sbjct: 81  SNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGLSYRWLLNEF 140
Query: 165 PISQAPPNPRRKVGPN--RITIENLRKSDTGNYGCNATNSLGYVYKDVY-----VNVLAH 217
           P +  P + R  V      + I     SD GNY C AT+ + +  K V+     +N+ A 
Sbjct: 141 P-NFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAE 199
Query: 218 -----APEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD 271
                AP I    P + Y + G+ V L C  FG P P + W      L+  ++T  E   
Sbjct: 200 DTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSP-QWTTAEP-T 257
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNA 331
           L+I  V+F D G Y C A N  G     G + V+          D E + G +  + C A
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAA 317
Query: 332 VSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
              P  + ++ WLR  EP+  ++    +  +   L  +K S  DSG Y C A+ +   I 
Sbjct: 318 AGKP--RPTVRWLRNGEPLASQNRVEVLAGD---LRFSKLSLEDSGMYQCVAENKHGTIY 372
Query: 392 AQATLTVQV 400
           A A L VQ 
Sbjct: 373 ASAELAVQA 381

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 109/288 (37%), Gaps = 31/288 (10%)
Query: 134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTG 193
           F   + EE V   C+A   P     W  NG  +   P +  + VG N + +   +  D G
Sbjct: 15  FPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAG 74
Query: 194 NYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCRVFGA-PKPEVN 251
            Y C A+N +G V     +       E ++  +D     +G  V+L C      P     
Sbjct: 75  VYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGLSYR 134
Query: 252 WIHNQKE---LTGGRYTILE-TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
           W+ N+      T GR+ + + TG+L I     +D G Y+C A + +  +  S      + 
Sbjct: 135 WLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKS---VFSKF 191
Query: 308 THITDQPEDYEVEA---------------GQSATFRCNAVSDPSLKLSIVWLRGSEPIDF 352
             +    ED  + A               GQ  T  C A  +P  +  I W +    +D 
Sbjct: 192 AQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPR--IKWRK----VDG 245
Query: 353 ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
              P++  + + +L +   S  D G Y C A+        Q  + VQ 
Sbjct: 246 SLSPQWTTA-EPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQA 292

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 120/266 (45%), Gaps = 24/266 (9%)
Query: 55  CIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI-------IKHVEFSDQGSYTCEVS 107
           C   GT   +  W+KD   I P      GNY  +L+       +  V   D G YTC  S
Sbjct: 27  CHVTGTAPIKITWAKDNREIRPG-----GNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81
Query: 108 NGVGEAKSYSIDLSVLAAPYFT--VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
           N  G+  S S  L V A P F   +EP  I   +E T  +ECK  G PE ++ W  +   
Sbjct: 82  NVAGK-DSCSAQLGVQAPPRFIKKLEPSRIVKQDEHT-RYECKIGGSPEIKVLWYKDETE 139
Query: 166 ISQAPPNPRRKVGPNRITIE--NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE 223
           I Q     R     +   +E  NL   D+G+Y C A N+ G       + V    P   +
Sbjct: 140 I-QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-KEPPVFRK 197
Query: 224 APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETG---DLKITDVAF 279
            P    T+ G  V L C + G P  +V+W  +++EL +G +Y I+       + I +V  
Sbjct: 198 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 257
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVK 305
           AD GEY C A N +G+    GS+T+K
Sbjct: 258 ADIGEYQCKASNDVGSYTCVGSITLK 283

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 125/284 (44%), Gaps = 10/284 (3%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
           +A P+F ++P  ++ A  E+ TF+C  +G    +I W  + + I     N +  +  N  
Sbjct: 3   MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVENTA 61
Query: 183 TIENLR--KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
           T+  L+  K D G Y C A+N  G       + V A    I +          +     C
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 241 RVFGAPKPEVNWIHNQKEL---TGGRYTILET-GDLKITDVAFADSGEYTCFARNKLGTA 296
           ++ G+P+ +V W  ++ E+   +  R + +E+   L++ +++  DSG+YTC A N  G+A
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 297 QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
             S SL VKE      +P   E   G      C     P  ++S  W +    +    + 
Sbjct: 182 SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS--WHKDKRELRSGKKY 239
Query: 357 RFVQSNDY-SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           + +  N   S+ +      D G+Y C+A  ++       ++T++
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 18/180 (10%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRY--TILE-TGDLKITDVAFADSGEYTCF 288
           G++    C V G    ++ W  + +E+  GG Y  T++E T  L +  V   D+G+YTC+
Sbjct: 20  GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79
Query: 289 ARNKLGTAQGSGSLTVKEHTHITDQPEDYE-VEAGQSATFRCNAVSDPSLKLSIVWLRGS 347
           A N  G    S  L V+       + E    V+  +   + C     P +K  ++W +  
Sbjct: 80  ASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIK--VLWYKDE 137
Query: 348 EPIDFESEPR--FVQS----NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
             I   S+ R  FV+S      Y+L+V      DSG YTC A        +  +L V+ P
Sbjct: 138 TEIQESSKFRMSFVESVAVLEMYNLSVE-----DSGDYTCEAHNAAGSASSSTSLKVKEP 192

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 119/266 (44%), Gaps = 24/266 (9%)
Query: 55  CIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI-------IKHVEFSDQGSYTCEVS 107
           C   GT   +  W+KD   I P      GNY  +L+       +  V   D G YTC  S
Sbjct: 27  CHVTGTAPIKITWAKDNREIRPG-----GNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81
Query: 108 NGVGEAKSYSIDLSVLAAPYFT--VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
           N  G+  S S  L V   P F   +EP  I   +E T  +ECK  G PE ++ W  +   
Sbjct: 82  NVAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT-RYECKIGGSPEIKVLWYKDETE 139
Query: 166 ISQAPPNPRRKVGPNRITIE--NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE 223
           I Q     R     +   +E  NL   D+G+Y C A N+ G       + V    P   +
Sbjct: 140 I-QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-KEPPVFRK 197
Query: 224 APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETG---DLKITDVAF 279
            P    T+ G  V L C + G P  +V+W  +++EL +G +Y I+       + I +V  
Sbjct: 198 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 257
Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVK 305
           AD GEY C A N +G+    GS+T+K
Sbjct: 258 ADIGEYQCKASNDVGSYTCVGSITLK 283

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 124/284 (43%), Gaps = 10/284 (3%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
           +A P+F ++P  ++ A  E+ TF+C  +G    +I W  + + I     N +  +  N  
Sbjct: 3   MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG-NYKMTLVENTA 61
Query: 183 TIENLR--KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
           T+  L+  K D G Y C A+N  G       + V      I +          +     C
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 241 RVFGAPKPEVNWIHNQKEL---TGGRYTILET-GDLKITDVAFADSGEYTCFARNKLGTA 296
           ++ G+P+ +V W  ++ E+   +  R + +E+   L++ +++  DSG+YTC A N  G+A
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 297 QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
             S SL VKE      +P   E   G      C     P  ++S  W +    +    + 
Sbjct: 182 SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS--WHKDKRELRSGKKY 239
Query: 357 RFVQSNDY-SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           + +  N   S+ +      D G+Y C+A  ++       ++T++
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 18/180 (10%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRY--TILE-TGDLKITDVAFADSGEYTCF 288
           G++    C V G    ++ W  + +E+  GG Y  T++E T  L +  V   D+G+YTC+
Sbjct: 20  GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79
Query: 289 ARNKLGTAQGSGSLTVKEHTHITDQPEDYE-VEAGQSATFRCNAVSDPSLKLSIVWLRGS 347
           A N  G    S  L V+E      + E    V+  +   + C     P +K  ++W +  
Sbjct: 80  ASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIK--VLWYKDE 137
Query: 348 EPIDFESEPR--FVQS----NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
             I   S+ R  FV+S      Y+L+V      DSG YTC A        +  +L V+ P
Sbjct: 138 TEIQESSKFRMSFVESVAVLEMYNLSVE-----DSGDYTCEAHNAAGSASSSTSLKVKEP 192

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 141/369 (38%), Gaps = 30/369 (8%)
Query: 49  KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHV-EFSDQGSYTCEVS 107
           KKV+L C   G P P   W  +G  ++            SL+I +  +  D G+Y C  +
Sbjct: 23  KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIAT 82
Query: 108 NGVGEAKSYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASGLP----EPEIHWVHN 162
           N  G   S    L       F T     ++    + +   C   G P    E    W+ N
Sbjct: 83  NSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC---GPPPHSGELSYAWIFN 139
Query: 163 GKPISQAPPNPRRKVG--PNRITIENLRKSDTGNYGCNATNS------LGYVYKDVYVN- 213
             P  Q   + RR V      + I  + KSD GNY C  TN+      LG     +  N 
Sbjct: 140 EYPSYQ---DNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRND 196
Query: 214 --VLAHAPEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTILET 269
             +  + P+I  + P+      G TV L C   G P P + W   + K +          
Sbjct: 197 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN 256
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
           G L+I +    D+G Y C A N  G     G LT     +      D  V   +S  + C
Sbjct: 257 GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWEC 316
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
            A   P  K +  WL+  +P+        +Q    +L +T  +  D+G Y C A+ +   
Sbjct: 317 KANGRP--KPTYRWLKNGDPLLTRDR---IQIEQGTLNITIVNLSDAGMYQCVAENKHGV 371
Query: 390 IEAQATLTV 398
           I + A L+V
Sbjct: 372 IFSSAELSV 380

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 116/298 (38%), Gaps = 34/298 (11%)
Query: 124 AAPYFTVEPEFIN---AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           + P F  EP  +     +EE+ V   C+  G P+P I W  NG  +     + R  V   
Sbjct: 3   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG-MDFRYSVVDG 61
Query: 181 RITIENLRKS-DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVL 238
            + I N  K+ D G Y C ATNS G +         A+        +   +V  G+ +VL
Sbjct: 62  SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 121
Query: 239 TCRVFGAPKPEVN-----WIHNQ--KELTGGRYTILETGDLKITDVAFADSGEYTCFARN 291
            C     P P        WI N+        R+   ETG+L I  V  +D G YTC   N
Sbjct: 122 LC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTN 177
Query: 292 K------LG-----TAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS 340
                  LG       +  G +   E       PE    E G +    C A+ +P    +
Sbjct: 178 TVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV--PT 235
Query: 341 IVWLRGS-EPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLT 397
           I+W R   +PI    + R  +SN   L +    + D+G Y C A+       A+  LT
Sbjct: 236 ILWRRADGKPI--ARKARRHKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 290

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 141/369 (38%), Gaps = 30/369 (8%)
Query: 49  KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHV-EFSDQGSYTCEVS 107
           KKV+L C   G P P   W  +G  ++            SL+I +  +  D G+Y C  +
Sbjct: 24  KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIAT 83
Query: 108 NGVGEAKSYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASGLP----EPEIHWVHN 162
           N  G   S    L       F T     ++    + +   C   G P    E    W+ N
Sbjct: 84  NSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC---GPPPHSGELSYAWIFN 140
Query: 163 GKPISQAPPNPRRKVGP--NRITIENLRKSDTGNYGCNATNS------LGYVYKDVYVN- 213
             P  Q   + RR V      + I  + KSD GNY C  TN+      LG     +  N 
Sbjct: 141 EYPSYQ---DNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRND 197
Query: 214 --VLAHAPEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTILET 269
             +  + P+I  + P+      G TV L C   G P P + W   + K +          
Sbjct: 198 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN 257
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
           G L+I +    D+G Y C A N  G     G LT     +      D  V   +S  + C
Sbjct: 258 GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWEC 317
Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
            A   P  K +  WL+  +P+        +Q    +L +T  +  D+G Y C A+ +   
Sbjct: 318 KANGRP--KPTYRWLKNGDPLLTRDR---IQIEQGTLNITIVNLSDAGMYQCVAENKHGV 372
Query: 390 IEAQATLTV 398
           I + A L+V
Sbjct: 373 IFSSAELSV 381

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 115/298 (38%), Gaps = 34/298 (11%)
Query: 124 AAPYFTVEPEFIN---AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           + P F  EP  +     +EE+ V   C+  G P+P I W  NG  +     + R  V   
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG-MDFRYSVVDG 62
Query: 181 RITIENLRKS-DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVL 238
            + I N  K+ D G Y C ATNS G +         A+        +   +V  G+ +VL
Sbjct: 63  SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 239 TCRVFGAPKPEVN-----WIHNQ--KELTGGRYTILETGDLKITDVAFADSGEYTCFARN 291
            C     P P        WI N+        R+   ETG+L I  V  +D G YTC   N
Sbjct: 123 LC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTN 178
Query: 292 KLGT-----------AQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS 340
            +              +  G +   E       PE    E G +    C A+ +P    +
Sbjct: 179 TVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV--PT 236
Query: 341 IVWLRGS-EPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLT 397
           I+W R   +PI    + R  +SN   L +    + D+G Y C A+       A+  LT
Sbjct: 237 ILWRRADGKPI--ARKARRHKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 291

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 124/293 (42%), Gaps = 61/293 (20%)
Query: 65  TIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC----------EVSNGVGEAK 114
           T+W KDG  + PS+R+  G   + L + +    D G+Y+C            S  V +A 
Sbjct: 41  TVWVKDGTGLVPSERVLVGP--QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAP 98
Query: 115 SYSIDLSVL----------AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWV 160
           S   D               APY+T    ++ + +      TV F C A+G P P I W+
Sbjct: 99  SSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWL 158
Query: 161 HNGKPISQAPPNPRRKVGPNRI-------TIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
            NG+           ++G  ++        +E++  SD GNY C   N  G + +   ++
Sbjct: 159 KNGREF-----RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 213
Query: 214 VLAHAPE--ITEA--PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY----- 264
           VL  +P   I +A  P ++  V G  V   C+V+   +P + W+    E+ G +      
Sbjct: 214 VLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL-KHVEVNGSKVGPDGT 272
Query: 265 ---TILETGDLKITD----------VAFADSGEYTCFARNKLGTAQGSGSLTV 304
              T+L+T     TD          V F D+GEYTC A N +G +  S  L V
Sbjct: 273 PYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 104/297 (35%), Gaps = 71/297 (23%)
Query: 159 WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH- 217
           WV +G  +    P+ R  VGP R+ + N    D+G Y C          + +   VL H 
Sbjct: 43  WVKDGTGLV---PSERVLVGPQRLQVLNASHEDSGAYSCR---------QRLTQRVLCHF 90
Query: 218 APEITEAPKDEYT------------------------VDGK--------TVVLTCRVFGA 245
           +  +T+AP                             +D K        TV   C   G 
Sbjct: 91  SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGN 150
Query: 246 PKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG 300
           P P ++W+ N +E       GG     +   L +  V  +D G YTC   NK G+ + + 
Sbjct: 151 PTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTY 210
Query: 301 SLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSE------- 348
           +L V E   H  I     P +     G    F C   SD   +  I WL+  E       
Sbjct: 211 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA--QPHIQWLKHVEVNGSKVG 268
Query: 349 ----PIDFESEPRFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFIEAQATLTV 398
               P     +     + D  L V     +   D+G+YTC A   + F    A L V
Sbjct: 269 PDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 39/215 (18%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E +       +TV F+C +SG P+P + W+ NGK        P  ++G  
Sbjct: 13  APYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFK-----PDHRIGGY 67
Query: 181 R-------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEY 229
           +       I ++++  SD GNY C   N  G +     ++V+  +P   I +A  P ++ 
Sbjct: 68  KVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKT 127
Query: 230 TVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD----- 276
              G  V   C+V+  P+P + W+    E+ G +          IL+T  +  TD     
Sbjct: 128 VALGSNVEFMCKVYSDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEV 186
Query: 277 -----VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                V+F D+GEYTC A N +G +  S  LTV E
Sbjct: 187 LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 221

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 77/195 (39%), Gaps = 26/195 (13%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTC 287
            KTV   C   G P+P + W+ N KE       GG      T  + +  V  +D G YTC
Sbjct: 32  AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 91
Query: 288 FARNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
              N+ G+   +  L V E   H  I     P +  V  G +  F C   SDP  +  I 
Sbjct: 92  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDP--QPHIQ 149
Query: 343 WLRGSE----PIDFESEPRF-------VQSNDYSLTVTKSSEL---DSGQYTCRAQTELD 388
           WL+  E     I  ++ P         V + D  + V     +   D+G+YTC A   + 
Sbjct: 150 WLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 209
Query: 389 FIEAQATLTVQVPLE 403
                A LTV   LE
Sbjct: 210 LSHHSAWLTVLEALE 224

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 39/216 (18%)
Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
            APY+T    +E +       +TV F+C +SG P+P + W+ NGK        P  ++G 
Sbjct: 11  VAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFK-----PDHRIGG 65
Query: 180 NR-------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDE 228
            +       I ++++  SD GNY C   N  G +     ++V+  +P   I +A  P ++
Sbjct: 66  YKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANK 125
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---- 276
               G  V   C+V+  P+P + W+    E+ G +          IL+T  +  TD    
Sbjct: 126 TVALGSNVEFMCKVYSDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 277 ------VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                 V+F D+GEYTC A N +G +  S  LTV E
Sbjct: 185 VLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 77/195 (39%), Gaps = 26/195 (13%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTC 287
            KTV   C   G P+P + W+ N KE       GG      T  + +  V  +D G YTC
Sbjct: 31  AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 288 FARNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
              N+ G+   +  L V E   H  I     P +  V  G +  F C   SDP  +  I 
Sbjct: 91  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDP--QPHIQ 148
Query: 343 WLRGSE----PIDFESEPRF-------VQSNDYSLTVTKSSEL---DSGQYTCRAQTELD 388
           WL+  E     I  ++ P         V + D  + V     +   D+G+YTC A   + 
Sbjct: 149 WLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Query: 389 FIEAQATLTVQVPLE 403
                A LTV   LE
Sbjct: 209 LSHHSAWLTVLEALE 223

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 39/216 (18%)
Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
            APY+T    +E +       +TV F+C +SG P P + W+ NGK        P  ++G 
Sbjct: 11  VAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFK-----PDHRIGG 65
Query: 180 NR-------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDE 228
            +       I ++++  SD GNY C   N  G +     ++V+  +P   I +A  P ++
Sbjct: 66  YKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANK 125
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---- 276
               G  V   C+V+  P+P + W+    E+ G +          IL+T  +  TD    
Sbjct: 126 TVALGSNVEFMCKVYSDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 277 ------VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                 V+F D+GEYTC A N +G +  S  LTV E
Sbjct: 185 VLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 76/195 (38%), Gaps = 26/195 (13%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTC 287
            KTV   C   G P P + W+ N KE       GG      T  + +  V  +D G YTC
Sbjct: 31  AKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 288 FARNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
              N+ G+   +  L V E   H  I     P +  V  G +  F C   SDP  +  I 
Sbjct: 91  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDP--QPHIQ 148
Query: 343 WLRGSE----PIDFESEPRF-------VQSNDYSLTVTKSSEL---DSGQYTCRAQTELD 388
           WL+  E     I  ++ P         V + D  + V     +   D+G+YTC A   + 
Sbjct: 149 WLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Query: 389 FIEAQATLTVQVPLE 403
                A LTV   LE
Sbjct: 209 LSHHSAWLTVLEALE 223

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 90/196 (45%), Gaps = 18/196 (9%)
Query: 124 AAPYFTVEPEFINAAEE--ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN- 180
           + P  ++  +  NA  E  E +TF C+ASG PEP I W  NGK I +      +  G N 
Sbjct: 1   SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNT 58
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
            +T+ N+  SD G Y C ATN  G   K  ++ V    P I +  K+E T +   V L C
Sbjct: 59  ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ-PHIIQL-KNETTYENGQVTLVC 116
Query: 241 RVFGAPKPEVNW---------IHNQKELTGGRYTILETG--DLKITDVAFADSGEYTCFA 289
              G P PE+ W             K L G      + G   L I DV  +DSG Y C A
Sbjct: 117 DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 176
Query: 290 RNKLGTAQGSGSLTVK 305
            +++G  Q S  L ++
Sbjct: 177 ASRIGGHQKSMYLDIE 192

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKIT--DVAFADSGEYTCFAR 290
           G+ +  +CR  G+P+P ++W  N K +      IL+  + ++T  ++  +D G Y C A 
Sbjct: 19  GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 78
Query: 291 NKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI 350
           NK G  +    L V    HI     +   E GQ  T  C+A  +P  +  I W R  +  
Sbjct: 79  NKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQ-VTLVCDAEGEPIPE--ITWKRAVDGF 135
Query: 351 DFESEPRFV--------QSNDYSLTVTKSSELDSGQYTCRAQTEL 387
            F    + +        Q    SL +      DSG+Y C A + +
Sbjct: 136 TFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 91/208 (43%), Gaps = 29/208 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E          TV F C A G P P + W+ NGK   Q       KV   
Sbjct: 7   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 66
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDGK 234
              + +E++  SD GNY C   N  G +    +++V+  +P   I +A  P +  TV G 
Sbjct: 67  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 126
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---------- 276
            V   C+V+   +P + WI    E  G +Y         +L+   +  TD          
Sbjct: 127 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 185
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
           V F D+GEYTC A N +G +  S  LTV
Sbjct: 186 VTFEDAGEYTCLAGNSIGISFHSAWLTV 213

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 68/188 (36%), Gaps = 26/188 (13%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
           TV   C   G P P + W+ N KE       GG     +   L +  V  +D G YTC  
Sbjct: 28  TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 87
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
            N+ G+   +  L V E   H  I     P +     G    F C   SD   +  I W+
Sbjct: 88  ENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 145
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
           +  E    +  P             V + D  + V     +   D+G+YTC A   +   
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 391 EAQATLTV 398
              A LTV
Sbjct: 206 FHSAWLTV 213

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 91/208 (43%), Gaps = 29/208 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E          TV F C A G P P + W+ NGK   Q       KV   
Sbjct: 6   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 65
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDGK 234
              + +E++  SD GNY C   N  G +    +++V+  +P   I +A  P +  TV G 
Sbjct: 66  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 125
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---------- 276
            V   C+V+   +P + WI    E  G +Y         +L+   +  TD          
Sbjct: 126 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 184
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
           V F D+GEYTC A N +G +  S  LTV
Sbjct: 185 VTFEDAGEYTCLAGNSIGISFHSAWLTV 212

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 68/188 (36%), Gaps = 26/188 (13%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
           TV   C   G P P + W+ N KE       GG     +   L +  V  +D G YTC  
Sbjct: 27  TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 86
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
            N+ G+   +  L V E   H  I     P +     G    F C   SD   +  I W+
Sbjct: 87  ENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 144
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
           +  E    +  P             V + D  + V     +   D+G+YTC A   +   
Sbjct: 145 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 204
Query: 391 EAQATLTV 398
              A LTV
Sbjct: 205 FHSAWLTV 212

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 29/208 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E          TV F C A G P P + W+ NGK   Q       KV   
Sbjct: 7   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 66
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDGK 234
              + +E++  SD GNY C   N  G +    +++V+   P   I +A  P +  TV G 
Sbjct: 67  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGG 126
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---------- 276
            V   C+V+   +P + WI    E  G +Y         +L+   +  TD          
Sbjct: 127 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 185
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
           V F D+GEYTC A N +G +  S  LTV
Sbjct: 186 VTFEDAGEYTCLAGNSIGISFHSAWLTV 213

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 68/188 (36%), Gaps = 26/188 (13%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
           TV   C   G P P + W+ N KE       GG     +   L +  V  +D G YTC  
Sbjct: 28  TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 87
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
            N+ G+   +  L V E   H  I     P +     G    F C   SD   +  I W+
Sbjct: 88  ENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 145
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
           +  E    +  P             V + D  + V     +   D+G+YTC A   +   
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 391 EAQATLTV 398
              A LTV
Sbjct: 206 FHSAWLTV 213

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 89/208 (42%), Gaps = 29/208 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E          TV F C A G P P + W+ NGK   Q       KV   
Sbjct: 7   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 66
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HAPEITEA-PKDEYTVDGK 234
              + +E++  SD GNY C   N  G +    +++V+    H P +    P +  TV G 
Sbjct: 67  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 126
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---------- 276
            V   C+V+   +P + WI    E  G +Y         +L+   +  TD          
Sbjct: 127 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 185
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
           V F D+GEYTC A N +G +  S  LTV
Sbjct: 186 VTFEDAGEYTCLAGNSIGISFHSAWLTV 213

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 71/195 (36%), Gaps = 29/195 (14%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
           TV   C   G P P + W+ N KE       GG     +   L +  V  +D G YTC  
Sbjct: 28  TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 87
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
            N+ G+   +  L V E   H  I     P +     G    F C   SD   +  I W+
Sbjct: 88  ENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA--QPHIQWI 145
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
           +  E    +  P             V + D  + V     +   D+G+YTC A   +   
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 391 EAQATLTVQVPLEAP 405
              A LTV   L AP
Sbjct: 206 FHSAWLTV---LPAP 217

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 89/208 (42%), Gaps = 29/208 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E          TV F C A G P P + W+ NGK   Q       KV   
Sbjct: 5   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 64
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HAPEITEA-PKDEYTVDGK 234
              + +E++  SD GNY C   N  G +    +++V+    H P +    P +  TV G 
Sbjct: 65  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 124
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD---------- 276
            V   C+V+   +P + WI    E  G +Y         +L+   +  TD          
Sbjct: 125 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 183
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
           V F D+GEYTC A N +G +  S  LTV
Sbjct: 184 VTFEDAGEYTCLAGNSIGISFHSAWLTV 211

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 68/188 (36%), Gaps = 26/188 (13%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
           TV   C   G P P + W+ N KE       GG     +   L +  V  +D G YTC  
Sbjct: 26  TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 85
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
            N+ G+   +  L V E   H  I     P +     G    F C   SD   +  I W+
Sbjct: 86  ENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA--QPHIQWI 143
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
           +  E    +  P             V + D  + V     +   D+G+YTC A   +   
Sbjct: 144 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 203
Query: 391 EAQATLTV 398
              A LTV
Sbjct: 204 FHSAWLTV 211

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 89/209 (42%), Gaps = 29/209 (13%)
Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
            APY+T     E          TV F C A G P P   W+ NGK   Q       KV  
Sbjct: 6   GAPYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRN 65
Query: 180 NRITI--ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDG 233
              ++  E++  SD GNY C   N  G +    +++V+  +P   I +A  P +  TV G
Sbjct: 66  QHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVG 125
Query: 234 KTVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGDLKITD--------- 276
             V   C+V+   +P + WI    E  G +Y         +L+   +  TD         
Sbjct: 126 GDVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 277 -VAFADSGEYTCFARNKLGTAQGSGSLTV 304
            V F D+GEYTC A N +G +  S  LTV
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTV 213

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 66/188 (35%), Gaps = 26/188 (13%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
           TV   C   G P P   W+ N KE       GG     +   L    V  +D G YTC  
Sbjct: 28  TVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVV 87
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
            N+ G+   +  L V E   H  I     P +     G    F C   SD   +  I W+
Sbjct: 88  ENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 145
Query: 345 RGSEPIDFESEP-----------RFVQSNDYSLTVTKSSEL---DSGQYTCRAQTELDFI 390
           +  E    +  P             V + D  + V     +   D+G+YTC A   +   
Sbjct: 146 KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Query: 391 EAQATLTV 398
              A LTV
Sbjct: 206 FHSAWLTV 213

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 27/188 (14%)
Query: 131 EPEFINAAEEET------VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV------G 178
           +P F+   E++T       +F C+A+G P+P I W+  GK +S    + R +V       
Sbjct: 7   KPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS----SQRFEVIEFDDGA 62
Query: 179 PNRITIENLR-KSDTGNYGCNATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTV 231
            + + I+ LR + D   Y C ATNSLG +     ++VL         P I   P+ +   
Sbjct: 63  GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVE 122
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHN----QKELTGGRYTILETGDLKITDVAFADSGEYTC 287
            G+T  + C   G P PE++W  +        + GR   L +G L+I     +D G+Y C
Sbjct: 123 KGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYEC 182
Query: 288 FARNKLGT 295
            A N  GT
Sbjct: 183 VATNSAGT 190

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 16/179 (8%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
           P   + P+D+  + G      C+  G PKP + W+   K+++  R+ ++E  D     L+
Sbjct: 8   PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 274 ITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKEHTH-------ITDQPEDYEVEAGQSA 325
           I  +    D   Y C A N LG    S  L+V E          I   P+   VE G++A
Sbjct: 68  IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTA 127
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
           T  C A  +P  ++S  W +   P+D   S  R  Q    +L +  S E D G+Y C A
Sbjct: 128 TMLCAAGGNPDPEIS--WFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVA 184

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 27/188 (14%)
Query: 131 EPEFINAAEEET------VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV------G 178
           +P FI   E++T       +F C+A+G P+P I W+  GK +S    + R +V       
Sbjct: 6   KPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS----SQRFEVIEFDDGA 61
Query: 179 PNRITIENLR-KSDTGNYGCNATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTV 231
            + + I+ LR + D   Y C ATNSLG +     ++VL         P I   P+ +   
Sbjct: 62  GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVE 121
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHN----QKELTGGRYTILETGDLKITDVAFADSGEYTC 287
             +T  + C   G P PE++W  +        + GR   L +G L+I     +D G+Y C
Sbjct: 122 KARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYEC 181
Query: 288 FARNKLGT 295
            A N  GT
Sbjct: 182 VATNSAGT 189

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 16/179 (8%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
           P   + P+D+  + G      C+  G PKP + W+   K+++  R+ ++E  D     L+
Sbjct: 7   PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 66
Query: 274 ITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKEHTH-------ITDQPEDYEVEAGQSA 325
           I  +    D   Y C A N LG    S  L+V E          I   P+   VE  ++A
Sbjct: 67  IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTA 126
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
           T  C A  +P  ++S  W +   P+D   S  R  Q    +L +  S E D G+Y C A
Sbjct: 127 TMLCAAGGNPDPEIS--WFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVA 183

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 20/201 (9%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG--GRYTILET-GDL 272
           AH PEI   P+++    G      C   G P P + W  N K+++G   RYT+LE  G +
Sbjct: 6   AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 65
Query: 273 KITDV----AFADSGEYTCFARNKLGTA-QGSGSLTVKEHTH-------ITDQPEDYEVE 320
            I  +    A  D   Y C A N +G A     +LT+ E          IT  P    +E
Sbjct: 66  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 125
Query: 321 AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT 380
            G +    C A+ +P+   +I W++    +D  S PR+   + + L +  S E D G+Y 
Sbjct: 126 VGHTVLMTCKAIGNPT--PNIYWIKNQTKVDM-SNPRYSLKDGF-LQIENSREEDQGKYE 181
Query: 381 CRAQTELDFIEAQAT-LTVQV 400
           C A+  +    ++AT L V+V
Sbjct: 182 CVAENSMGTEHSKATNLYVKV 202

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 20/201 (9%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG--GRYTILET-GDL 272
           AH PEI   P+++    G      C   G P P + W  N K+++G   RYT+LE  G +
Sbjct: 4   AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 273 KITDV----AFADSGEYTCFARNKLGTA-QGSGSLTVKEHTH-------ITDQPEDYEVE 320
            I  +    A  D   Y C A N +G A     +LT+ E          IT  P    +E
Sbjct: 64  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 321 AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT 380
            G +    C A+ +P+   +I W++    +D  S PR+   + + L +  S E D G+Y 
Sbjct: 124 VGHTVLMTCKAIGNPT--PNIYWIKNQTKVDM-SNPRYSLKDGF-LQIENSREEDQGKYE 179
Query: 381 CRAQTELDFIEAQAT-LTVQV 400
           C A+  +    ++AT L V+V
Sbjct: 180 CVAENSMGTEHSKATNLYVKV 200

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 119/274 (43%), Gaps = 23/274 (8%)
Query: 141 ETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVG-PNRITIENLRKSDTGNYGCN 198
           E+  F C A G PE  I W +  G+ I        +K G  +R+TI N    D G Y C 
Sbjct: 20  ESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 78
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE 258
           AT++ G   +   V  +       E    +    G+   + CRV  +P P V+W+++ +E
Sbjct: 79  ATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEE 138
Query: 259 LT---GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE 315
           +T     R+ +L   +L+I ++  +D G Y C  R      +  G +  ++   I + P 
Sbjct: 139 VTTISDNRFAMLANNNLQILNINKSDEGIYRCEGR-----VEARGEIDFRDIIVIVNVPP 193
Query: 316 DYEV---------EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSL 366
              +         E G+  TF C A   P   +S  W R  + I+ E+E   ++ ++  L
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAIS--WFRNGKLIE-ENEKYILKGSNTEL 250
Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
           TV      D G Y CRA  +    E QA L V V
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 89/206 (43%), Gaps = 27/206 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E          TV F C A G P P + W+ NGK   Q       KV   
Sbjct: 15  APYWTNTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDGK 234
              + +E++  SD GNY C   N  G +    +++V+  +P   I +A  P +  TV G 
Sbjct: 75  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 134
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGD--------LKITDVA 278
            V   C+V+   +P + WI    E  G +Y         +L+           L + +V 
Sbjct: 135 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 193
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTV 304
            AD+GEY C   N +G A  S  LTV
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWLTV 219

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 71/193 (36%), Gaps = 24/193 (12%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
           TV   C   G P P + W+ N KE       GG     +   L +  V  +D G YTC  
Sbjct: 36  TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 95
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
            N+ G+   +  L V E   H  I     P +     G    F C   SD   +  I W+
Sbjct: 96  ENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 153
Query: 345 RGSEPIDFESEPRFV------------QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA 392
           +  E    +  P  +             SN   L +   +E D+G+Y C+    +     
Sbjct: 154 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 213
Query: 393 QATLTVQVPLEAP 405
            A LTV    +AP
Sbjct: 214 SAWLTVLPKQQAP 226

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 145/364 (39%), Gaps = 63/364 (17%)
Query: 66  IW--SKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
           +W  +   +P++P  ++S GN  ++L + +V  +D  SY CE  N V   +S S+ L+VL
Sbjct: 143 LWWVNNQSLPVSPRLQLSNGN--RTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL 200
Query: 124 AAPYF-TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
             P   T+ P   +    E +   C A+  P  +  W  NG            +     +
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGT----------FQQSTQEL 250
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-------DGKT 235
            I N+  +++G+Y C A NS   + +     +  +A    E PK   T        D   
Sbjct: 251 FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYA----EPPKPFITSNNSNPVEDEDA 306
Query: 236 VVLTCRVFGAPKPEVN------WIHNQKELTGGRYTIL-ETGDLKITDVAFADSGEYTCF 288
           V LTC      +PE+       W++NQ      R  +  +   L +  V   D G Y C 
Sbjct: 307 VALTC------EPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECG 360
Query: 289 ARNKLGTAQGSGSLTVKEHTHITDQPEDYEV-------EAGQSATFRCNAVSDPSLKLSI 341
            +N+L        +      ++   P+D  +         G + +  C+A S+P  + S 
Sbjct: 361 IQNELSVDHSDPVI-----LNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYS- 414
Query: 342 VWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            WL     ID       +Q +   L ++  +E +SG YTC+A             T+ V 
Sbjct: 415 -WL-----IDGN-----IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS 463
Query: 402 LEAP 405
            E P
Sbjct: 464 AELP 467

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 16/191 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR---KVGPNR 181
           +P     P  +   + E  T  CK  G PEP I W  +G+P+S       R   K G   
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 182 I--TIENLRKSDTGNYGCNATNSLGY-VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
              T++  ++ D G Y C A N +G  V +   + +     +    PKD     G+T +L
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128
Query: 239 TCR-VFGAPKPEVNWIHNQKEL---------TGGRYTILETGDLKITDVAFADSGEYTCF 288
            C    G P+P + WI +   L            R  I++ G+L I++V   D G Y C 
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCI 188
Query: 289 ARNKLGTAQGS 299
           A+N +GT + S
Sbjct: 189 AQNLVGTRESS 199

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 16/191 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR---KVGPNR 181
           +P     P  +   + E  T  CK  G PEP I W  +G+P+S       R   K G   
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 182 I--TIENLRKSDTGNYGCNATNSLGY-VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
              T++  ++ D G Y C A N +G  V +   + +     +    PKD     G+T +L
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128
Query: 239 TCR-VFGAPKPEVNWIHNQKEL---------TGGRYTILETGDLKITDVAFADSGEYTCF 288
            C    G P+P + WI +   L            R  I++ G+L I++V   D G Y C 
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCI 188
Query: 289 ARNKLGTAQGS 299
           A+N +GT + S
Sbjct: 189 AQNLVGTRESS 199

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 87/206 (42%), Gaps = 27/206 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E          TV F C A G P P + W+ NGK   Q       KV   
Sbjct: 15  APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HAPEITEA-PKDEYTVDGK 234
              + +E++  SD GNY C   N  G +    +++V+    H P +    P +  TV G 
Sbjct: 75  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG 134
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGD--------LKITDVA 278
            V   C+V+   +P + WI    E  G +Y         +L+           L + +V 
Sbjct: 135 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 193
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTV 304
            AD+GEY C   N +G A  S  LTV
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWLTV 219

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 71/193 (36%), Gaps = 24/193 (12%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
           TV   C   G P P + W+ N KE       GG     +   L +  V  +D G YTC  
Sbjct: 36  TVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 95
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
            N+ G+   +  L V E   H  I     P +     G    F C   SD   +  I W+
Sbjct: 96  ENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA--QPHIQWI 153
Query: 345 RGSEPIDFESEPRFV------------QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA 392
           +  E    +  P  +             SN   L +   +E D+G+Y C+    +     
Sbjct: 154 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 213
Query: 393 QATLTVQVPLEAP 405
            A LTV    +AP
Sbjct: 214 SAWLTVLPKQQAP 226

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 42/235 (17%)
Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
            APY+T    ++ + +      TV F C A+G P P I W+ NG+           ++G 
Sbjct: 10  GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG-----EHRIGG 64
Query: 180 NR-------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDE 228
            +       + +E++  SD GNY C   N  G + +   ++VL  +P   I +A  P ++
Sbjct: 65  IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQ 124
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGR--------YTILETG---------D 271
             V G  V   C+V+   +P + W+    E+ G +         T+L++           
Sbjct: 125 TAVLGSDVEFHCKVYSDAQPHIQWL-KHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSAT 326
           L++ +V+  D GEY C A N +G A+ +  L+V    H     E+  VEA ++ +
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSV----HGPRAAEEELVEADEAGS 234

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 74/193 (38%), Gaps = 25/193 (12%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
           TV   C   G P P ++W+ N +E       GG     +   L +  V  +D G YTC  
Sbjct: 32  TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 91
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
            NK G+ + + +L V E   H  I     P +     G    F C   SD   +  I WL
Sbjct: 92  ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA--QPHIQWL 149
Query: 345 RGSEPIDFESEP----------RFVQSN---DYSLTVTKSSELDSGQYTCRAQTELDFIE 391
           +  E    +  P           ++  +   D  L +   SE D G+Y CRA   +   E
Sbjct: 150 KHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE 209
Query: 392 AQATLTVQVPLEA 404
               L+V  P  A
Sbjct: 210 KAFWLSVHGPRAA 222

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 87/206 (42%), Gaps = 27/206 (13%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T     E          TV F C A G P P   W+ NGK   Q       KV   
Sbjct: 14  APYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQ 73
Query: 181 RITI--ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE--ITEA--PKDEYTVDGK 234
             ++  E++  SD GNY C   N  G +    +++V+  +P   I +A  P +  TV G 
Sbjct: 74  HWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGG 133
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRY--------TILETGD--------LKITDVA 278
            V   C+V+   +P + WI    E  G +Y         +L+           L + +V 
Sbjct: 134 DVEFVCKVYSDAQPHIQWI-KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 192
Query: 279 FADSGEYTCFARNKLGTAQGSGSLTV 304
            AD+GEY C   N +G A  S  LTV
Sbjct: 193 EADAGEYICKVSNYIGQANQSAWLTV 218

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 69/193 (35%), Gaps = 24/193 (12%)
Query: 235 TVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKITDVAFADSGEYTCFA 289
           TV   C   G P P   W+ N KE       GG     +   L    V  +D G YTC  
Sbjct: 35  TVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVV 94
Query: 290 RNKLGTAQGSGSLTVKE---HTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
            N+ G+   +  L V E   H  I     P +     G    F C   SD   +  I W+
Sbjct: 95  ENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWI 152
Query: 345 RGSEPIDFESEPRFV------------QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA 392
           +  E    +  P  +             SN   L +   +E D+G+Y C+    +     
Sbjct: 153 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 212
Query: 393 QATLTVQVPLEAP 405
            A LTV    +AP
Sbjct: 213 SAWLTVLPKQQAP 225

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 11/195 (5%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GPN 180
           AP FT   + +   E  T TFE   SG P PE+ W  +G+ IS +   P  ++    G  
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS-TLPGVQISFSDGRA 63
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVL 238
           ++TI  + K+++G Y   ATN  G       + V A    P   +  +      G  V L
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 239 TCRVFGAPKPEVNWIHNQKELTGG-RYTILETGDLKITDVAFA---DSGEYTCFARNKLG 294
             RV G P P V +  +  E+     + I + GDL    +A A   DSG Y+  A N +G
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 295 TAQGSGSLTVKEHTH 309
            A  +  L V+  T 
Sbjct: 184 RATSTAELLVQGETR 198

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 22/198 (11%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG----GRYTILETGDL 272
            AP  T+  +    ++G T      + G P PEV+W  + + ++     G       G  
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 273 KIT--DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---HITDQPEDYEVEAGQSATF 327
           K+T   V  A+SG Y+  A N  G A  +  L VK  T   +   + +   V  G     
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 328 --RCNAVSDPSLKLSIVWLRGSE---PIDFESEPRFVQSND-YSLTVTKSSELDSGQYTC 381
             R   +  P +K    +  G+E    +DF+      Q  D YSL + ++   DSG Y+ 
Sbjct: 124 QVRVTGIPTPVVKF---YRDGAEIQSSLDFQ----ISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 382 RAQTELDFIEAQATLTVQ 399
            A   +    + A L VQ
Sbjct: 177 NATNSVGRATSTAELLVQ 194

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 11/191 (5%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GPN 180
           AP FT   + +   E  T TFE   SG P PE+ W  +G+ IS +   P  ++    G  
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS-TLPGVQISFSDGRA 63
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVL 238
           ++TI  + K+++G Y   ATN  G       + V A    P   +  +      G  V L
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 239 TCRVFGAPKPEVNWIHNQKELTGG-RYTILETGDLKITDVAFA---DSGEYTCFARNKLG 294
             RV G P P V +  +  E+     + I + GDL    +A A   DSG Y+  A N +G
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 295 TAQGSGSLTVK 305
            A  +  L V+
Sbjct: 184 RATSTAELLVQ 194

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 22/198 (11%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG----GRYTILETGDL 272
            AP  T+  +    ++G T      + G P PEV+W  + + ++     G       G  
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 273 KIT--DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---HITDQPEDYEVEAGQSATF 327
           K+T   V  A+SG Y+  A N  G A  +  L VK  T   +   + +   V  G     
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 328 --RCNAVSDPSLKLSIVWLRGSE---PIDFESEPRFVQSND-YSLTVTKSSELDSGQYTC 381
             R   +  P +K    +  G+E    +DF+      Q  D YSL + ++   DSG Y+ 
Sbjct: 124 QVRVTGIPTPVVKF---YRDGAEIQSSLDFQ----ISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 382 RAQTELDFIEAQATLTVQ 399
            A   +    + A L VQ
Sbjct: 177 NATNSVGRATSTAELLVQ 194

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 126/320 (39%), Gaps = 49/320 (15%)
Query: 125 APYFTVEP----EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
            P F  EP    +F N+   E    ECKASG P PEI W+ +        P  R+     
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAE---IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 59
Query: 181 RITIENLRKSDTGN------YGCNATNSLG-YVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
           ++     R  D         Y C A N  G  + +DV+V  +      +EA  +EY + G
Sbjct: 60  KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVIQSYESEA-DNEYVIRG 118
Query: 234 KTVVLTCRVFGAPKPEV-----------NWIHNQKELTGGRYTILETGDLKITDVAFADS 282
            +VV+ C +       V           N+  N    T G+Y +L +G+L I +V   D 
Sbjct: 119 NSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDG 178
Query: 283 -GEYTCFARNKLG----TAQGSGSLTVKE-------HTHITDQPEDYEVEAGQSATFRCN 330
              Y C  +++L      +   G L + E         +  D+ +  +VE   S +  C 
Sbjct: 179 YKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCM 238
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQYTCRAQ 384
           A S P+   S  W +    I+  +  + V  ND       +L +  +   DSG+Y C   
Sbjct: 239 AQSYPT--PSFRWYKF---IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 293
Query: 385 TELDFIEAQATLTVQVPLEA 404
             +     +  LTV  PL A
Sbjct: 294 NSVGGESVETVLTVTAPLSA 313

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 17/167 (10%)
Query: 238 LTCRVFGAPKPEVNWIHNQKELTGGRYTILE------TGDLKITDVAFADSGEYTCFARN 291
           L C     P P   W    +  T  +  +L       +G L I D    DSG+Y C   N
Sbjct: 235 LLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 294
Query: 292 KLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID 351
            +G       LTV         P    V+ G+ A F C    +P   +S  W++  + I 
Sbjct: 295 SVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS--WMKDGKAIG 352
Query: 352 FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
                     ++  L +    + D G Y C  + + +  EA A L +
Sbjct: 353 H---------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 164/419 (39%), Gaps = 77/419 (18%)
Query: 49  KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
           ++V +   + G P P+  W K+G+P+  +  I  G+    L I  V   D G+YT  ++N
Sbjct: 346 ERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV---LTIMEVSERDTGNYTVILTN 402
Query: 109 GVG-EAKSYSIDLSVLAAPYFTVEPEFINAAEE----ETVTFECKASGLPEP-EIHWVHN 162
            +  E +S+ + L V   P    E   I+  +      T T  C    +P P  IHW   
Sbjct: 403 PISKEKQSHVVSLVVYVPPQIG-EKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQ 461
Query: 163 ---------GKPISQAPPNPR---RKV----GPNRI--------TIENLRKS-------- 190
                     + +S   P P    R V    G N+I         IE   K+        
Sbjct: 462 LEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQA 521
Query: 191 --DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP 248
              +  Y C A N +G   + +  +V    PEIT  P D    + ++V L C    +   
Sbjct: 522 ANVSALYKCEAVNKVGRGERVISFHV-TRGPEITLQP-DMQPTEQESVSLWCTADRSTFE 579
Query: 249 EVNW---------IH----------NQKELTGGRYTIL--ETGDLKITDV---AFADSGE 284
            + W         IH          N   L     T+    T D+ I ++   +  D G+
Sbjct: 580 NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGD 639
Query: 285 YTCFARNKLGTAQGS--GSLTVKEHTH--ITDQPEDYEVEAGQSATFRCNAVSDPSLKLS 340
           Y C A+++    +      LTV E     IT   E+     G+S    C A  +P  +  
Sbjct: 640 YVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ-- 697
Query: 341 IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           I+W + +E +  E     ++  + +LT+ +  + D G YTC+A + L   + +A   ++
Sbjct: 698 IMWFKDNETL-VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 41  KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKS----LIIKHVEF 96
           K ++ +        C   G P P+  W+K G  +N S R     + +S    L I+ +  
Sbjct: 14  KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRT 72
Query: 97  -SDQGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECK 148
             D+  Y C   N VGE   ++  L+VL         P   + P+        T T  C 
Sbjct: 73  PRDENVYECVAQNSVGEITVHA-KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCA 131
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
           ASG P+PEI W  +  P+  +  N R +++    + IE+  ++D G Y C ATNS G  Y
Sbjct: 132 ASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRY 191
Query: 208 K---DVYVNV 214
               ++YV V
Sbjct: 192 SSPANLYVRV 201

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 73/179 (40%), Gaps = 16/179 (8%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
           P   + PKD+  V G      C+  G PKP V W    K++   R+  +E  +     L+
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 274 ITDVAF-ADSGEYTCFARNKLGTAQGSGSLTVKEHTH-------ITDQPEDYEVEAGQSA 325
           I  +    D   Y C A+N +G       LTV            I   P+   VE  ++A
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
           T  C A  +P  +  I W +   P+D   S  R  Q    +L +  S E D G+Y C A
Sbjct: 127 TMLCAASGNPDPE--ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 41  KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEF 96
           K ++ +        C   G P P+  W+K G  +N S R     +    G  L I+ +  
Sbjct: 14  KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRT 72
Query: 97  -SDQGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECK 148
             D+  Y C   N VGE   ++  L+VL         P   + P+        T T  C 
Sbjct: 73  PRDENVYECVAQNSVGEITVHA-KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCA 131
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
           ASG P+PEI W  +  P+  +  N R +++    + IE+  ++D G Y C ATNS G  Y
Sbjct: 132 ASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRY 191
Query: 208 K---DVYVNV 214
               ++YV V
Sbjct: 192 SSPANLYVRV 201

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 73/179 (40%), Gaps = 16/179 (8%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
           P   + PKD+  V G      C+  G PKP V W    K++   R+  +E  +     L+
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 274 ITDVAF-ADSGEYTCFARNKLGTAQGSGSLTVKEHTH-------ITDQPEDYEVEAGQSA 325
           I  +    D   Y C A+N +G       LTV            I   P+   VE  ++A
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
           T  C A  +P  +  I W +   P+D   S  R  Q    +L +  S E D G+Y C A
Sbjct: 127 TMLCAASGNPDPE--ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 21/270 (7%)
Query: 53  LFCIFGGTPLPQTI--WSKDGVPINPSD-RIS---QGNYGKSLIIKHVEFSDQGSYTCEV 106
             C   G    + I  +S +G  ++P+  RIS     +   +L I +    D G Y C V
Sbjct: 22  FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKP 165
           +   G     ++++ +     F   P      E E     C   S LP P I W H G+ 
Sbjct: 82  TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRD 140
Query: 166 ISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNA-TNSLGYV-YKDVYVNVLAHAPEITE 223
           +          +  N + I  ++K+D G Y C     + G + +KD  + V+ + P   +
Sbjct: 141 VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD--IQVIVNVPPTVQ 198
Query: 224 APKDEYTVD---GKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGDLKI 274
           A +         G++V L C   G P+P ++W      I N++E         ++ +L I
Sbjct: 199 ARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTI 258
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
            +V   D  EY C A NK G    S  L V
Sbjct: 259 RNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 19/181 (10%)
Query: 233 GKTVVLTCRVFG-APKPEVNWIH-NQKELTGGRYTIL------ETGDLKITDVAFADSGE 284
           G++    C+V G A   +++W   N ++L+  +  I       ++  L I +    D+G 
Sbjct: 17  GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGI 76
Query: 285 YTCFARNKLGTAQGSGSLTVK--EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
           Y C    + GT Q   ++ VK  +     + P   E + G+ A   C+ VS  SL  +I+
Sbjct: 77  YKCVVTAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVS--SLPPTII 133
Query: 343 WLRGSEPIDFESEPRF-VQSNDYSLTVTKSSELDSGQYTCR----AQTELDFIEAQATLT 397
           W      +  + + RF V SN+Y L +    + D G Y C     A+ E++F + Q  + 
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Query: 398 V 398
           V
Sbjct: 193 V 193

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 136/359 (37%), Gaps = 34/359 (9%)
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNW---------IHNQKELTGGRYTILETGD--LKI 274
           K+E T +   V L C   G P PE+ W             K L G      + G   L I
Sbjct: 8   KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 67
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
            DV  +DSG Y C A +++G  Q S  L ++           Y    G      C+  S+
Sbjct: 68  KDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSN 127
Query: 335 PSLKLSIVWLRGSEPIDFESEPR---FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
           P    SI W R    +  ++      +       L +  +S+ D G+Y C A   +    
Sbjct: 128 PP--ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRF 185
Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEG 450
            +  L +     +P    +I+ +    A VS+N   P S  G     Y+V     K+   
Sbjct: 186 QEYILALADVPSSPYGVKIIE-LSQTTAKVSFN--KPDSHGGVPIHHYQVDV---KEVAS 239
Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSL 510
            I +++ + G  T   ++   P +    RV A NG   G  S+I  F T      +  S+
Sbjct: 240 EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSI 299
Query: 511 EAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQS-----------VKGTKVGPLLERLPY 558
              P    +F L   K +     ++ Y +KY+S           V+G K   +LE L +
Sbjct: 300 HGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQW 358

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 72/170 (42%), Gaps = 16/170 (9%)
Query: 53  LFCIFGGTPLPQTIWSKDGVPI-NPSDRISQGNYGKSLIIKHVEFS---DQGSYTCEVSN 108
             C   G P P+ +W+K G  + N    + + + G   +++        D+  Y C  SN
Sbjct: 26  FICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN 85
Query: 109 GVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH 161
            VGE  S S  L+VL         P   + P+        T T  C ASG P+PEI W  
Sbjct: 86  NVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK 144
Query: 162 NGKPISQAPPNPR----RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY 207
           +  P+  +  N R    R      + IE   +SD G Y C ATNS G  Y
Sbjct: 145 DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRY 194

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 24/190 (12%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV------GP 179
           P FT  P           +F C+A+G P P+I W   GK +S    N R +V        
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS----NQRFEVIEFDDGSG 62
Query: 180 NRITIENLRK-SDTGNYGCNATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTVD 232
           + + I+ LR   D   Y C A+N++G +     + VL         P I   P+ +    
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 233 GKTVVLTCRVFGAPKPEVNWIHN----QKELTGGRYTILET---GDLKITDVAFADSGEY 285
            +T  + C   G P PE+ W  +          GR   L +   G L+I     +D G+Y
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182
Query: 286 TCFARNKLGT 295
            C A N  GT
Sbjct: 183 ECVATNSAGT 192

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 19/182 (10%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
           P  T  P D+  V G      C+  G P+P++ W    K+++  R+ ++E  D     L+
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 274 ITDVAF-ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITD-------QPEDYEVEAGQSA 325
           I  +    D   Y C A N +G    S  LTV     I          P+   VE  ++A
Sbjct: 67  IQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA 126
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFE-SEPRFVQSNDYS---LTVTKSSELDSGQYTC 381
           T  C A  +P  +  I W +   P+D   +  R  Q    S   L + +S E D G+Y C
Sbjct: 127 TMLCAASGNPDPE--ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Query: 382 RA 383
            A
Sbjct: 185 VA 186

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 79/194 (40%), Gaps = 14/194 (7%)
Query: 38  VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPINPSD-----RIS-QGNYGKS- 88
           +  K E    N +V L C   G P+P+  W +  DG      D     RI  +G +G S 
Sbjct: 5   IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
           L IK V+ SD G Y CE ++ +G     S+ L +  AP F        + E   +   C 
Sbjct: 65  LHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCD 123
Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL---RKSDTGNYGCNATNSLGY 205
               P   IHW  +   +        +     R  I  +     +D G Y C ATN +G 
Sbjct: 124 VKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Query: 206 VYKDVYVNVLAHAP 219
            +++ Y+  LA  P
Sbjct: 184 RFQE-YILALADVP 196

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 131 EPEFINAAEEET-----VTFECKASGLPEPEIHWVH--NGKPISQAPPNPRRKV------ 177
           +P  I    E T     VT  C A G P PEI W    +G   ++   +   ++      
Sbjct: 1   QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
           G + + I++++ SD+G Y C A + +G   K +Y+++  +AP+        Y+ +G  + 
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI-EYAPKFISNQTIYYSWEGNPIN 119
Query: 238 LTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD------LKITDVAFADSGEYTCFARN 291
           ++C V   P   ++W  ++  L     T L+T        L+I   +  D G Y C A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 292 KLGT 295
            +GT
Sbjct: 180 HIGT 183

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 110/289 (38%), Gaps = 23/289 (7%)
Query: 226 KDEYTVDGKTVVLTCRVFGAPKPEVNW---------IHNQKELTGGRYTILETGD--LKI 274
           K+E T +   V L C   G P PE+ W             K L G      + G   L I
Sbjct: 8   KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 67
Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
            DV  +DSG Y C A +++G  Q S  L ++           Y    G      C+  S+
Sbjct: 68  KDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSN 127
Query: 335 PSLKLSIVWLRGSEPIDFESEPR---FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
           P    SI W R    +  ++      +       L +  +S+ D G+Y C A   +    
Sbjct: 128 PP--ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRF 185
Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEG 450
            +  L +     +P    +I+ +    A VS+N   P S  G     Y+V     K+   
Sbjct: 186 QEYILALADVPSSPYGVKIIE-LSQTTAKVSFN--KPDSHGGVPIHHYQVDV---KEVAS 239
Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
            I +++ + G  T   ++   P +    RV A NG   G  S+I  F T
Sbjct: 240 EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 12/193 (6%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR--RKVGPN--- 180
           P     P  +  ++ E  T  CKA G P P I W   G+ +     +PR  R + P+   
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 181 ---RITIENLRKSDTGNYGCNATNSLG-YVYKDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
              RI      + D G Y C A N LG  V  D  + V     +  + P D     G+  
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPA 129
Query: 237 VLTCR-VFGAPKPEVNWIHNQKELTGGRYTI-LETGDLKITDVAFADSGEYTCFARNKLG 294
           V+ C+   G P+P ++W  +   L      I +  G L IT    +D+G+Y C   N +G
Sbjct: 130 VMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVG 189
Query: 295 TAQGS-GSLTVKE 306
             +     LTV E
Sbjct: 190 ERESEVAELTVLE 202

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 79/202 (39%), Gaps = 20/202 (9%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGDL 272
           P I E P D     G+   L C+  G P P + W      +   K+       +L +G L
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 273 KITDVAFA-----DSGEYTCFARNKLGTA-QGSGSLTVK-EHTHITDQPEDYEVEAGQSA 325
               +        D G Y C ARN LG A     SL V          P D  V  G+ A
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPA 129
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
              C        + +I W +   P+D + E   ++     +T T+ S  D+G+Y C    
Sbjct: 130 VMECQPPRG-HPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKS--DAGKYVCVGTN 186
Query: 386 ELDFIEAQ-ATLTVQVPLEAPS 406
            +   E++ A LTV   LE PS
Sbjct: 187 MVGERESEVAELTV---LERPS 205

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
Query: 88  SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV---EPEFINAAEEETVT 144
           +L I  V  SDQG YTC  S+G+   K+ S  + V   P+          + A   E V 
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLMTKKN-STFVRVHEKPFVAFGSGMESLVEATVGERVR 219
Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204
              K  G P PEI W  NG P+     N   K G + +TI  + + DTGNY    TN + 
Sbjct: 220 IPAKYLGYPPPEIKWYKNGIPLES---NHTIKAG-HVLTIMEVSERDTGNYTVILTNPIS 275
Query: 205 YVYKDVYVNVLAHA-PEITE----APKDEYTVDGKTVVLTCRVFGAPKP-EVNW 252
              +   V+++ +  P+I E    +P D Y   G T  LTC V+  P P  ++W
Sbjct: 276 KEKQSHVVSLVVYVPPQIGEKSLISPVDSYQY-GTTQTLTCTVYAIPPPHHIHW 328

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 97  SDQGSYTCEVS-NGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEE--ETVTFECKASGLP 153
           SD+G Y CE      GE     I + V   P  ++  +  NA  E  E +TF C+ASG P
Sbjct: 67  SDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP 126
Query: 154 EPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212
           EP I W  NGK I +      +  G N  +T+ N+  SD G Y C ATN  G   K  ++
Sbjct: 127 EPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Query: 213 NVLAH 217
            V   
Sbjct: 185 QVFVQ 189

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 12/179 (6%)
Query: 133 EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDT 192
           EF    + E V   C+ S  P P + W+++ + ++    N    +  N + I N+ KSD 
Sbjct: 13  EFKQGEDAEVV---CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE 69
Query: 193 GNYGCNA-TNSLGYV-YKDVYVNVLAHAPEITEAPKDEYTVD---GKTVVLTCRVFGAPK 247
           G Y C     + G + ++D+ V  + + P     P+  +      G+ +  +CR  G+P+
Sbjct: 70  GIYRCEGRVEARGEIDFRDIIV--IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 127
Query: 248 PEVNWIHNQKELTGGRYTILE--TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
           P ++W  N K +      IL+    +L + ++  +D G Y C A NK G  +    L V
Sbjct: 128 PAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKITDVAFADSGEYTCFA 289
           G+   + CRV  +P P V+W+++ +E+T     R+ +L   +L+I ++  +D G Y C  
Sbjct: 17  GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-- 74
Query: 290 RNKLGTAQGSGSLTVKEHTHITDQPE---------DYEVEAGQSATFRCNAVSDPSLKLS 340
               G  +  G +  ++   I + P          +   E G+  TF C A   P   +S
Sbjct: 75  ---EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 131
Query: 341 IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
             W R  + I+ E+E   ++ ++  LTV      D G Y CRA  +    E QA L V V
Sbjct: 132 --WFRNGKLIE-ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 53  LFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEF-SDQGSYTCEVS 107
             C   G P P+  W+K G  +N S R     +    G  L I+ +    D+  Y C   
Sbjct: 26  FVCQATGDPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQ 84
Query: 108 NGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
           N  GE   ++  L+VL         P   + P+        T T  C ASG P+PEI W 
Sbjct: 85  NPHGEVTVHA-KLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWF 143
Query: 161 HNGKPISQAPPNPR-RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK---DVYVNV 214
            +  P+  +  N R +++    + IE+  ++D G Y C A+NS G  Y    ++YV V
Sbjct: 144 KDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAGVRYSSPANLYVRV 201

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 71/179 (39%), Gaps = 16/179 (8%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
           P   + P D+  V G      C+  G PKP V W    K++   R+  +E  +     L+
Sbjct: 7   PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 274 ITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKEHT-------HITDQPEDYEVEAGQSA 325
           I  +    D   Y C A+N  G       LTV           +I   P+   VE  ++A
Sbjct: 67  IQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTA 126
Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
           T  C A  +P  +  I W +   P+D   S  R  Q     L +  S E D G+Y C A
Sbjct: 127 TMLCAASGNPDPE--ITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVA 183

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 47  RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKSLIIKHVEFSDQGSY 102
           + + V+L C   G   P   W KDG  +   D+    +S+ ++   L +K VE SD G Y
Sbjct: 16  QGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVH 161
            C+V +G     S  + L+V   P+FTVEP+ +           C+A G PEP  I W  
Sbjct: 76  WCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR 135
Query: 162 NGKPISQAPPNP 173
               I    P+P
Sbjct: 136 GTTKIGGPAPSP 147

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQA-----PPNPRRKVGPNRITIEN 186
           P  +  ++ + V   C   G  EP+I WV +G  +        P + +  +G   +++++
Sbjct: 9   PVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG--FLSLKS 66
Query: 187 LRKSDTGNYGCNATN-SLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
           + +SD G Y C   +     + + V++ V    P  T  PKD          L+C   G 
Sbjct: 67  VERSDAGRYWCQVEDGGETEISQPVWLTV-EGVPFFTVEPKDLAVPPNAPFQLSCEAVGP 125
Query: 246 PKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTA 296
           P+P  + W     ++ G   +      L +T V    S  ++C A N  G A
Sbjct: 126 PEPVTIVWWRGTTKIGGPAPS---PSVLNVTGV--TQSTXFSCEAHNLKGLA 172

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 130/391 (33%), Gaps = 70/391 (17%)
Query: 52  ELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGS------YTC 104
           E+ C   G P+P+ IW + DG  +     + Q +    L+       D         Y C
Sbjct: 29  EIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC 88
Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVE------------------PEFI---------NA 137
              N  G   S  + +  + A Y+  +                  P F+         + 
Sbjct: 89  LARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT 148
Query: 138 AEEET----VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTG 193
            EEE       ++ K   LP  E+H    G          R K   +R+T E    +  G
Sbjct: 149 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTK---HRLTGETRLSATKG 205
Query: 194 NYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI 253
                       V  +   +     P + + P +   +   T+ L C   G P P   W 
Sbjct: 206 RL----------VITEPISSSAPRTPALVQKPLE--LMVAHTISLLCPAQGFPAPSFRWY 253
Query: 254 HNQKELTGGRYTILE------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
              +  T  +  +L       +G L I D    DSG+Y C   N +G       LTV   
Sbjct: 254 KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP 313
Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
                 P    V+ G+ A F C    +P   +S  W++  + I           ++  L 
Sbjct: 314 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS--WMKDGKAIG---------HSESVLR 362
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
           +    + D G Y C  + + +  EA A L +
Sbjct: 363 IESVKKEDKGMYQCFVRNDRESAEASAELKL 393

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 122/320 (38%), Gaps = 52/320 (16%)
Query: 125 APYFTVEP----EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
            P F  EP    +F N+   E    ECKASG P PEI W+ +        P  R+     
Sbjct: 9   GPVFLKEPTNRIDFSNSTGAE---IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 65
Query: 181 RITIENLRKSDTGN------YGCNATNSLG-YVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
           ++     R  D         Y C A N  G  + +DV+V  +       +  K E+ + G
Sbjct: 66  KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK-EHVIRG 124
Query: 234 KTVVLTCRV--FGAPKPEVNWIHNQKELT-------GGRYTILETGDLKITDVAFADS-G 283
            + V+ C +  F A   EV   H  +E          G+Y +L +G+L I +V   D   
Sbjct: 125 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 184
Query: 284 EYTCFARNKLGTAQGSGSLTVKEHTHITDQP-------------EDYEVEAGQSATFRCN 330
            Y C  +++L    G   L+  +   +  +P             +  E+    + +  C 
Sbjct: 185 SYQCRTKHRL---TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP 241
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQYTCRAQ 384
           A   P+   S  W +    I+  +  + V  ND       +L +  +   DSG+Y C   
Sbjct: 242 AQGFPA--PSFRWYKF---IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 296
Query: 385 TELDFIEAQATLTVQVPLEA 404
             +     +  LTV  PL A
Sbjct: 297 NSVGGESVETVLTVTAPLSA 316

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 130/391 (33%), Gaps = 70/391 (17%)
Query: 52  ELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGS------YTC 104
           E+ C   G P+P+ IW + DG  +     + Q +    L+       D         Y C
Sbjct: 23  EIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC 82
Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVE------------------PEFI---------NA 137
              N  G   S  + +  + A Y+  +                  P F+         + 
Sbjct: 83  LARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT 142
Query: 138 AEEET----VTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTG 193
            EEE       ++ K   LP  E+H    G          R K   +R+T E    +  G
Sbjct: 143 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTK---HRLTGETRLSATKG 199
Query: 194 NYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI 253
                       V  +   +     P + + P +   +   T+ L C   G P P   W 
Sbjct: 200 RL----------VITEPISSSAPRTPALVQKPLE--LMVAHTISLLCPAQGFPAPSFRWY 247
Query: 254 HNQKELTGGRYTILE------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
              +  T  +  +L       +G L I D    DSG+Y C   N +G       LTV   
Sbjct: 248 KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP 307
Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
                 P    V+ G+ A F C    +P   +S  W++  + I           ++  L 
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS--WMKDGKAIGH---------SESVLR 356
Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
           +    + D G Y C  + + +  EA A L +
Sbjct: 357 IESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 122/320 (38%), Gaps = 52/320 (16%)
Query: 125 APYFTVEP----EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
            P F  EP    +F N+   E    ECKASG P PEI W+ +        P  R+     
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAE---IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 59
Query: 181 RITIENLRKSDTGN------YGCNATNSLG-YVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
           ++     R  D         Y C A N  G  + +DV+V  +       +  K E+ + G
Sbjct: 60  KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK-EHVIRG 118
Query: 234 KTVVLTCRV--FGAPKPEVNWIHNQKELT-------GGRYTILETGDLKITDVAFADS-G 283
            + V+ C +  F A   EV   H  +E          G+Y +L +G+L I +V   D   
Sbjct: 119 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 178
Query: 284 EYTCFARNKLGTAQGSGSLTVKEHTHITDQP-------------EDYEVEAGQSATFRCN 330
            Y C  +++L    G   L+  +   +  +P             +  E+    + +  C 
Sbjct: 179 SYQCRTKHRL---TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP 235
Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQYTCRAQ 384
           A   P+   S  W +    I+  +  + V  ND       +L +  +   DSG+Y C   
Sbjct: 236 AQGFPA--PSFRWYKF---IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 290
Query: 385 TELDFIEAQATLTVQVPLEA 404
             +     +  LTV  PL A
Sbjct: 291 NSVGGESVETVLTVTAPLSA 310

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR---RKVGPNR 181
           AP+F  E   +N   +   T  CK +G P+P + W   GK I       R    K G ++
Sbjct: 2   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
           + I ++   D   Y   ATN  G V      +V V    H P+  E     + + G+ V 
Sbjct: 62  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 121
Query: 238 LTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAF------ADSGEYTCFAR 290
           +     G P P + W   Q  +   G Y ++ T     T + F       D+G Y   A+
Sbjct: 122 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF--TSLVFPNGVERKDAGFYVVCAK 179
Query: 291 NKLGTAQGSGSLTVKE 306
           N+ G  Q +  L V +
Sbjct: 180 NRFGIDQKTVELDVAD 195

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR---RKVGPNR 181
           AP+F  E   +N   +   T  CK +G P+P + W   GK I       R    K G ++
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
           + I ++   D   Y   ATN  G V      +V V    H P+  E     + + G+ V 
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 238 LTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAF------ADSGEYTCFAR 290
           +     G P P + W   Q  +   G Y ++ T     T + F       D+G Y   A+
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF--TSLVFPNGVERKDAGFYVVCAK 181
Query: 291 NKLGTAQGSGSLTVKE 306
           N+ G  Q +  L V +
Sbjct: 182 NRFGIDQKTVELDVAD 197

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR---RKVGPNR 181
           AP+F  E   +N   +   T  CK +G P+P + W   GK I       R    K G ++
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
           + I ++   D   Y   ATN  G V      +V V    H P+  E     + + G+ V 
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 238 LTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAF------ADSGEYTCFAR 290
           +     G P P + W   Q  +   G Y ++ T     T + F       D+G Y   A+
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF--TSLVFPNGVERKDAGFYVVCAK 181
Query: 291 NKLGTAQGSGSLTVKE 306
           N+ G  Q +  L V +
Sbjct: 182 NRFGIDQKTVELDVAD 197

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 112/297 (37%), Gaps = 33/297 (11%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILE----T 269
           A AP   E  ++          L C+V G PKP V W    KE+   G +Y I E     
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
             L I  V   D+  Y   A N+ G+  G+ SL V+    I   P+  E   G     R 
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLE-GMGAVHALRG 119
Query: 330 NAVS---------DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS--ELDSGQ 378
             VS         DP     I W +G + ID     + + +  ++  V  +     D+G 
Sbjct: 120 EVVSIKIPFSGKPDP----VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 379 YTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGY 438
           Y   A+      +    L V    + P     ++V D  +  V+     P S  G     
Sbjct: 176 YVVCAKNRFGIDQKTVELDVADVPDPPRG---VKVSDVSRDSVNLTWTEPASDGGS---- 228
Query: 439 KVQTW-TEKDGEGSIRELIVNKG-ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 493
           K+  +  EK    + R L V +  E+  T ++ F   S  F RV+A N      PSE
Sbjct: 229 KITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQF-RVIAENKFGLSKPSE 284

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG--DLKIT 275
           AP  +   KD   ++G+  VL C V G P P + W+ N + +   R T  E G  +L I 
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC-EAGVAELHIQ 69
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTV 304
           D    D G YTC A N LG    S  +TV
Sbjct: 70  DALPEDHGTYTCLAENALGQVSCSAWVTV 98

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRY----TILETG 270
            +AP I E P D    +G    L CR  G     VNW+  N   +T G Y    ++L  G
Sbjct: 310 CYAPVIVEPPTDLNVTEGMAAELKCRT-GTSMTSVNWLTPNGTLMTHGSYRVRISVLHDG 368
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
            L  T+V   D+G+YTC   N  G    S +L V
Sbjct: 369 TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402

>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 135 INAAEEETVTFECKASGLPEPEIHW-----------VHNGKPISQAPPNPRRKVGPNRIT 183
           +   E E++   C  SG   P + W            +N +    AP   R     + IT
Sbjct: 11  VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQIT--APYADRVTFSSSGIT 68
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP--EITEAPKDEYTVDGKTVVLTCR 241
             ++ + D G Y C  +   G  Y +V +++    P  + T +     T+ G   VLTC 
Sbjct: 69  FSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTI-GNRAVLTCS 127
Query: 242 VF-GAPKPEVNWIHN-----------QKELTGGRYTIL-ETGDLKITDVAFADSGEYTCF 288
              G+P  E +W  +            +      +TI  ++GDL    V   DSGEY C 
Sbjct: 128 EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQ 187
Query: 289 ARNKLGTAQGS 299
           A+N  GTA  S
Sbjct: 188 AQNGYGTAMRS 198

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 29/200 (14%)
Query: 131 EPEFINAAEEETVTFECKASGLPEPEIHW-----------VHNGKPISQAPPNPRRKVGP 179
           EPE +   E   V   C  SG   P + W            +N K    A    R    P
Sbjct: 11  EPE-VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNK--ITASYEDRVTFLP 67
Query: 180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP--EITEAPKDEYTVDGKTVV 237
             IT +++ + DTG Y C  +   G  Y +V V ++   P  + T       T+ G   V
Sbjct: 68  TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI-GNRAV 126
Query: 238 LTC-RVFGAPKPEVNWIHN----------QKELTGGRYTI-LETGDLKITDVAFADSGEY 285
           LTC    G+P  E  W  +           +  +   Y +   TG+L    ++ +D+GEY
Sbjct: 127 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY 186
Query: 286 TCFARNKLGTAQGSGSLTVK 305
           +C ARN  GT   S ++ ++
Sbjct: 187 SCEARNGYGTPMTSNAVRME 206

>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11 Length = 312

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 116/283 (40%), Gaps = 41/283 (14%)
Query: 60  TPLPQTIWSKDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY 116
           TP  +  WSKD V    S R+   S+GN  K +  K +   D G Y+C+V++  G A SY
Sbjct: 29  TPKSEFSWSKDYVSTEDSPRLEVESKGNKTK-MTFKDLGMDDLGIYSCDVTDTDGIASSY 87
Query: 117 SID---LSVLAA-------PYFTVEPEF-INAAEEETVTFECKASGLP-EPEIHWVHNGK 164
            ID   L  L A       P   V+ E  +   E+  V F  +A  L    +++++ N K
Sbjct: 88  LIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEK 147
Query: 165 PISQAPP---NPRRKVGPNRITIENLRKSDTGNY-----GCNATNS-----LGYVYKDVY 211
            I + P    +  R  G   + +E L+  D G Y        ATN      +G V+K + 
Sbjct: 148 EIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207
Query: 212 VN--------VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGG 262
                     +    P   E    E T +   V+L C+V    K   + W  +++E++  
Sbjct: 208 KEAEFQRQEWIRKQGPHFVEYLSWEVTGEC-NVLLKCKVANIKKETHIVWYKDEREISVD 266
Query: 263 RYTILETG--DLKITDVAFADSGEYTCFARNKLGTAQGSGSLT 303
                + G   L IT+ +  D+G Y    ++  G  +    L 
Sbjct: 267 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309

>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2 Length = 189

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 141 ETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVG-PNRITIENLRKSDTGNYGCN 198
           E+  F C A G PE  I W +  G+ I        +K G  +R+TI N    D G Y C 
Sbjct: 18  ESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 76
Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE 258
           AT++ G   +   V  +       E    +    G+   + CRV  +P P V+W+++ +E
Sbjct: 77  ATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEE 136
Query: 259 LT---GGRYTILETGDLKITDVAFADSGEYTCFAR 290
           +T     R+ +L   +L+I ++  +D G Y C  R
Sbjct: 137 VTTISDNRFAMLANNNLQILNINKSDEGIYRCEGR 171

>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2 Length = 189

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKE--LTGGRYTILETG---DLKITDVAFADSGEYTC 287
           G++   TC   G P+  ++W + Q E  ++  R  + + G    L I +    D+G Y C
Sbjct: 17  GESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 75
Query: 288 FARNKLG-TAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRG 346
            A +  G T + +  L + +     +     E + G+ A   C   S P+  +S  WL  
Sbjct: 76  QATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS--WLYH 133
Query: 347 SEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTC----RAQTELDF 389
           +E +   S+ RF    + +L +   ++ D G Y C     A+ E+DF
Sbjct: 134 NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDF 180

>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of Human Kiaa0343 Protein Length = 125

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           +P+ AP N   + V+++  A V W+PV  +S+RGH +GY++  W  +      R  I  K
Sbjct: 13  LPMVAPGNVR-VNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71
Query: 460 -----GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 502
                G  T   +    P S     V   NG   GP S    F TPEG
Sbjct: 72  ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119

>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii Domains From The Cytoplasmic Tail Of Integrin Alpha6 Beta4 Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 13/199 (6%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           L AP N    +   ++K   +W P S     G   GY+V+ W + D E     L     +
Sbjct: 2   LGAPQNPN-AKAAGSRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLL---DSK 52
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
             + E+    P      +V A+     GP S ++S  T + VP     L    + S+   
Sbjct: 53  VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 112
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
           L W +P + NG +  Y++ Y  V      +GP+ + L  + +P      +  L  S  YR
Sbjct: 113 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENLRESQPYR 170
Query: 580 IHLAGYTKAGDGAESKYLF 598
             +     AG G E + + 
Sbjct: 171 YTVKARNGAGWGPEREAII 189

>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The Connecting Segment Of The Integrin Beta4 Length = 234

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 13/199 (6%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           L AP N    +   ++K   +W P S     G   GY+V+ W + D E     L     +
Sbjct: 6   LGAPQNPN-AKAAGSRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLL---DSK 56
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
             + E+    P      +V A+     GP S ++S  T + VP     L    + S+   
Sbjct: 57  VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 116
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
           L W +P + NG +  Y++ Y  V      +GP+ + L  + +P      +  L  S  YR
Sbjct: 117 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENLRESQPYR 174
Query: 580 IHLAGYTKAGDGAESKYLF 598
             +     AG G E + + 
Sbjct: 175 YTVKARNGAGWGPEREAII 193

>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And Plectin Length = 248

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 13/199 (6%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           L AP N    +   ++K   +W P S     G   GY+V+ W + D E     L     +
Sbjct: 5   LGAPQNPN-AKAAGSRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLL---DSK 55
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
             + E+    P      +V A+     GP S ++S  T + VP     L    + S+   
Sbjct: 56  VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 115
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
           L W +P + NG +  Y++ Y  V      +GP+ + L  + +P      +  L  S  YR
Sbjct: 116 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENLRESQPYR 173
Query: 580 IHLAGYTKAGDGAESKYLF 598
             +     AG G E + + 
Sbjct: 174 YTVKARNGAGWGPEREAII 192

>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The Connecting Segment Of The Integrin Beta4 Length = 249

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 13/199 (6%)
Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           L AP N    +   ++K   +W P S     G   GY+V+ W + D E     L     +
Sbjct: 6   LGAPQNPN-AKAAGSRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLL---DSK 56
Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
             + E+    P      +V A+     GP S ++S  T + VP     L    + S+   
Sbjct: 57  VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 116
Query: 522 LKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
           L W +P + NG +  Y++ Y  V      +GP+ + L  + +P      +  L  S  YR
Sbjct: 117 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENLRESQPYR 174
Query: 580 IHLAGYTKAGDGAESKYLF 598
             +     AG G E + + 
Sbjct: 175 YTVKARNGAGWGPEREAII 193

>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex Length = 195

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 63  PQTIWSKDGVPINPSDRI-SQGNYGKS----------LIIKHVEFSDQGSYTCEVSNGVG 111
           P+  W +DG  +  +D   +Q   G+           L I  ++ SD G Y C V  G  
Sbjct: 33  PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92
Query: 112 EAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAP 170
              S    + +   PYF  EPE    A        C+A G PEP ++ W+ +  P++ AP
Sbjct: 93  TFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152
Query: 171 PNPRRKVGPNR-ITIENLRKSDTGNYGCNATNSLG 204
            +     GP R + +  L K  T ++ C A N+ G
Sbjct: 153 GH-----GPQRSLHVPGLNK--TSSFSCEAHNAKG 180

>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex Length = 195

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 128 FTVEPEFINAAEEETVTFECK--ASGLPEPEIHWVHNGKPI-------SQAPPNPRRK-- 176
           F   P  I  A   T T  C+    G P PE+HW+ +G+ +       +Q P     +  
Sbjct: 5   FVGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDD 63
Query: 177 -VGPNRITIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGK 234
            +  +++ I +L+ SDTG Y C        +V +  YV  L   P   E P+D       
Sbjct: 64  WIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVG-LEGLPYFLEEPEDRTVAANT 122
Query: 235 TVVLTCRVFGAPKP-EVNWIHN 255
              L+C+  G P+P ++ W+ +
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQD 144

>pdb|2FCB|A Chain A, Human Fc Gamma Receptor Iib Ectodomain (Cd32) Length = 173

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
           +EP++IN  +E++VT  C+ +  PE + I W HNG  I +   P+ R K   N       
Sbjct: 9   LEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 61
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
              D+G Y C    +   +   V++ VL+    + + P  E+  +G+T+VL C  +   P
Sbjct: 62  ---DSGEYTCQTGQT--SLSDPVHLTVLSEW-LVLQTPHLEFQ-EGETIVLRCHSWKDKP 114
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
             +V +  N K     R       +  I     + SG+Y C
Sbjct: 115 LVKVTFFQNGKSKKFSR----SDPNFSIPQANHSHSGDYHC 151

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRY----TILETG 270
            +AP I E P D    +G    L CR        V+WI  N   +T G Y     +L  G
Sbjct: 339 CYAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG 397
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
            L  T+V   D+G YTC   N +G    S +L V
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE-----TGDLKITDVAFADSGEYT 286
           +GK + LTC V+G P PEV+W+ N+K L    +  L+     T    I  V+ ADSG+Y 
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295
Query: 287 CFARNKLGTAQGSGSLTV 304
              +NK G+     +++V
Sbjct: 296 LVVKNKYGSETSDFTVSV 313

>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The Fibroblast Growth Factor Receptor Length = 190

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 30/181 (16%)
Query: 143 VTFECKASGLPEPEIH--WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
           VT +C  +      ++  W  NG  ++      R+        I   R  D+G Y C   
Sbjct: 21  VTLQCNLTSSSHTLMYSYWTKNGVELTAT----RKNASNMEYRINKPRAEDSGEYHC-VY 75
Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE-- 258
           + +     +  + V A AP+IT   + E   +G+  ++ C+  G P PE  W+  +KE  
Sbjct: 76  HFVSAPKANATIEVKA-APDITGHKRSENKNEGQDAMMYCKSVGYPHPE--WMWRKKENG 132
Query: 259 ------LTGGR--------YTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
                  + GR        YT L   +L+IT+    D GEY C A N +G+A  S  L V
Sbjct: 133 VFEEISNSSGRFFIINKENYTELNIVNLQITE----DPGEYECNATNSIGSASVSTVLRV 188
Query: 305 K 305
           +
Sbjct: 189 R 189

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 48  NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY---GKSLIIKHVEFSDQGSYTC 104
           ++ V L C   G P P   W+KDG PI   D   + ++   G  LIIK V+ SD+  Y C
Sbjct: 28  SQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYIC 87
Query: 105 EVSNGVGEAKSYSIDLSVLA 124
              N  GE +  +I L V A
Sbjct: 88  IAENKAGE-QDATIHLKVFA 106

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--RITIENLRKSDTGNYGCN 198
           ++VT  C A G PEP + W  +G+PI Q     +     +   + I+ + KSD   Y C 
Sbjct: 29  QSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICI 88
Query: 199 ATNSLGYVYKDVYVNVLA 216
           A N  G     +++ V A
Sbjct: 89  AENKAGEQDATIHLKVFA 106

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 13/135 (9%)
Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV--LAHAPEITEAP---------KDEYT 230
           + I N+  SD GNY C  ++    + K V+     L   PE T  P         KD Y 
Sbjct: 68  LYIANVEASDKGNYSCFVSSP--SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYA 125
Query: 231 VDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFAR 290
           + G+ V L C   G P P++ W    + +            LKI ++   D G Y C A 
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185
Query: 291 NKLGTAQGSGSLTVK 305
           N  G  +    + V+
Sbjct: 186 NIRGKDKHQARIYVQ 200

>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13 Length = 212

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE-----TGDLKITDVAFADSGEYT 286
           +GK + LTC V+G P PEV+W+ N+K L    +  L+     T    I  V+ ADSG+Y 
Sbjct: 131 EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYG 190
Query: 287 CFARNKLGTAQGSGSLTV 304
              +NK G+     +++V
Sbjct: 191 LVVKNKYGSETSDFTVSV 208

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 52  ELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVSNG 109
           +L C   G PLP   W + G  +  S +    + G++  L +   E  D+G YTC  +N 
Sbjct: 26  QLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNE 85
Query: 110 VGEAKSYSIDLSVLAAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
           VGE ++ S  L + A P F     ++ ++  A    T+       G P P + W H G+ 
Sbjct: 86  VGEVETSS-KLLLQATPQFHPGYPLKEKYYGAV-GSTLRLHVMYIGRPVPAMTWFH-GQK 142
Query: 166 ISQAPPNPRRKVGPNRITIENL------------RKSDTGNYGCNATNSLGYV 206
           + Q   N         ITIEN             RK+  G Y    +N  G V
Sbjct: 143 LLQNSEN---------ITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 5/139 (3%)
Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG-PNRIT 183
           AP    E + +     E     C+  G P P+I W   GK + Q+        G  + +T
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEA-PKDE--YTVDGKTVVLTC 240
           +    + D G Y C ATN +G V     + +L   P+     P  E  Y   G T+ L  
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKL-LLQATPQFHPGYPLKEKYYGAVGSTLRLHV 125
Query: 241 RVFGAPKPEVNWIHNQKEL 259
              G P P + W H QK L
Sbjct: 126 MYIGRPVPAMTWFHGQKLL 144

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTIL----ETGDLK 273
           AP I +  KD  T  G+   L+C++ G P P++ W    KEL   R   +     T  L 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           +      D G YTC A N++G  + S  L ++
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 219 PEITEAPKDE-YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG--RYTILETGDLKIT 275
           P I + P ++   VDG T +L C+  G P P ++W+       G   R TI E G L+I 
Sbjct: 9   PIILQGPANQTLAVDG-TALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
           ++  +D+G YTC A +  G    S  L V E 
Sbjct: 68  NLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI--SQAPPNPRRKVGPNRIT 183
           P+F   P  +   E +    +CK SGLP P++ W  +GKP+    A     R+ G + + 
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 184 IENLRKSDTGNYGCNATNSLG 204
           IE +   D G Y C ATN  G
Sbjct: 70  IEPVTSRDAGIYTCIATNRAG 90

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL---TGGRYTILETG--DLK 273
           P   +AP D    +GK   + C+V G P P+++W  + K +   +  +  + E G   L 
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
           I  V   D+G YTC A N+ G    S  L V
Sbjct: 70  IEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGG----RYTILETGDL 272
           AP I +AP+D    +G+   L CR    P   V W+  N   L+      R ++L  G L
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
             + V  +D+G YTC   N  G +  S  L V
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441

>pdb|3RY6|C Chain C, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1 Length = 167

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
           +EP +IN  +E++VT  C+ +  PE + I W HNG  I +   P+ R K   N       
Sbjct: 6   LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 58
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
              D+G Y C    +   +   V++ VL+    + + P  E+  +G+T++L C  +   P
Sbjct: 59  ---DSGEYTCQTGQT--SLSDPVHLTVLSEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 111
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
             +V +  N K     +++ L+     I     + SG+Y C
Sbjct: 112 LVKVTFFQNGK---SQKFSRLDP-TFSIPQANHSHSGDYHC 148

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGDL 272
           P+I   P D    +GK + + C   G P PEV W      IH+Q++   GR+ I  T DL
Sbjct: 8   PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ---GRFHIENTDDL 64
Query: 273 K---ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
               I DV   D G YT      LG   GS S TV  H
Sbjct: 65  TTLIIMDVQKQDGGLYTL----SLGNEFGSDSATVNIH 98

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGDL 272
           P+I   P D    +GK + + C   G P PEV W      IH+Q++   GR+ I  T DL
Sbjct: 6   PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ---GRFHIENTDDL 62
Query: 273 K---ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
               I DV   D G YT      LG   GS S TV  H
Sbjct: 63  TTLIIMDVQKQDGGLYTL----SLGNEFGSDSATVNIH 96

>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr By Innate Pentraxins Length = 177

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
           +EP +IN  +E++VT  C+ +  PE + I W HNG  I +   P+ R K   N       
Sbjct: 9   LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 61
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
              D+G Y C    +   +   V++ VL+    + + P  E+  +G+T++L C  +   P
Sbjct: 62  ---DSGEYTCQTGQT--SLSDPVHLTVLSEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 114
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
             +V +  N K     +++ L+     I     + SG+Y C
Sbjct: 115 LVKVTFFQNGK---SQKFSRLDP-TFSIPQANHSHSGDYHC 151

>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia (High- Responder Polymorphism) Length = 170

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
           +EP +IN  +E++VT  C+ +  PE + I W HNG  I +   P+ R K   N       
Sbjct: 9   LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 61
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
              D+G Y C    +   +   V++ VL+    + + P  E+  +G+T++L C  +   P
Sbjct: 62  ---DSGEYTCQTGQT--SLSDPVHLTVLSEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 114
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
             +V +  N K     +++ L+     I     + SG+Y C
Sbjct: 115 LVKVTFFQNGK---SQKFSRLDP-TFSIPQANHSHSGDYHC 151

>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic Length = 172

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
           +EP +IN  +E++VT  C+ +  PE + I W HNG  I +   P+ R K   N       
Sbjct: 9   LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 61
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
              D+G Y C    +   +   V++ VL+    + + P  E+  +G+T++L C  +   P
Sbjct: 62  ---DSGEYTCQTGQT--SLSDPVHLTVLSEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 114
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
             +V +  N K     +++ L+     I     + SG+Y C
Sbjct: 115 LVKVTFFQNGK---SQKFSRLDP-TFSIPQANHSHSGDYHC 151

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR--RKVGPN 180
           +  P F   PE ++  E      + K SGLP P++ W  NG+ +     +     + G +
Sbjct: 3   MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
            +  E +R SD G Y C A N  G     V ++VLA
Sbjct: 63  SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP--PNPRRKVGPNRIT 183
           PYFT     ++  E     F+CK  G P+PE+ W  +  P+ ++        + G   +T
Sbjct: 42  PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 184 IENLRKSDTGNYGCNATNSLG 204
           I  +   D   Y C A NSLG
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLG 122

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
           P  T+   D   V+G      C+V G P PEV W  +   +   R+  ++  +     L 
Sbjct: 42  PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           I++V   D  +YTC A N LG A  +  L V+
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133

>pdb|1FCG|A Chain A, Ectodomain Of Human Fc Gamma Receptor, Fcgriia Length = 174

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
           +EP +IN  +E++VT  C+ +  PE + I W HNG  I +   P+ R K   N       
Sbjct: 12  LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 64
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
              D+G Y C    +   +   V++ VL     + + P  E+  +G+T++L C  +   P
Sbjct: 65  ---DSGEYTCQTGQT--SLSDPVHLTVLFEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 117
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
             +V +  N K     +++ L+     I     + SG+Y C
Sbjct: 118 LVKVTFFQNGK---SQKFSHLDP-TFSIPQANHSHSGDYHC 154

>pdb|3RY4|A Chain A, 1.5 Angstrom Resolution Structure Of Glycosylated Fcgammariia (Low- Responder Polymorphism) Length = 170

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 130 VEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI-SQAPPNPRRKVGPNRITIENL 187
           +EP +IN  +E++VT  C+ +  PE + I W HNG  I +   P+ R K   N       
Sbjct: 9   LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN------- 61
Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAP 246
              D+G Y C    +   +   V++ VL     + + P  E+  +G+T++L C  +   P
Sbjct: 62  ---DSGEYTCQTGQT--SLSDPVHLTVLFEW-LVLQTPHLEFQ-EGETIMLRCHSWKDKP 114
Query: 247 KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
             +V +  N K     +++ L+     I     + SG+Y C
Sbjct: 115 LVKVTFFQNGK---SQKFSHLDP-TFSIPQANHSHSGDYHC 151

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 53  LFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG 111
           L C+  G+P+P  +W KDGV ++  D RI Q   G  L I++ +  D G YTC  S   G
Sbjct: 28  LSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV-LQIRYAKLGDTGRYTCIASTPSG 86
Query: 112 EA 113
           EA
Sbjct: 87  EA 88

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGDLKITD 276
           P I + P ++      T VL+C   G+P P + W  +   ++    R   LE G L+I  
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
               D+G YTC A    G A  S  + V+E
Sbjct: 69  AKLGDTGRYTCIASTPSGEATWSAYIEVQE 98

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP--PNPRRKVGPNRIT 183
           PYFT     +   E     F+CK  G P+PE+ W  +  P+ ++        + G   +T
Sbjct: 42  PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 184 IENLRKSDTGNYGCNATNSLG 204
           I  +   D   Y C A NSLG
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLG 122

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
           P  T+   D   V+G      C+V G P PEV W  +   +   R+  ++  +     L 
Sbjct: 42  PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           I++V   D  +YTC A N LG A  +  L V+
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133

>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin Domains Of The Neural Cell Adhesion Molecule (Ncam) Length = 191

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 233 GKTVVLTCRVFG-APKPEVNWIH-NQKELT--GGRYTILETGD----LKITDVAFADSGE 284
           G++    C+V G A   +++W   N ++L+    R +++   D    L I +    D+G 
Sbjct: 17  GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGI 76
Query: 285 YTCFARNKLGTAQGSGSLTVK--EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
           Y C    + GT Q   ++ VK  +     + P   E + G+ A   C+ VS  SL  +I+
Sbjct: 77  YKCVVTAEDGT-QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVS--SLPPTII 133
Query: 343 WLRGSEPIDFESEPRF-VQSNDYSLTVTKSSELDSGQYTCR----AQTELDFIEAQATL 396
           W      +  + + RF V SN+Y L +    + D G Y C     A+ E++F + Q  +
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----LK 273
           P    +  D+   +G+ V+++ RV G PKP V+W+ N++ +   +    E  +     L+
Sbjct: 6   PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           I      D+G YTC A N+ G  Q    L V+
Sbjct: 66  ILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILE----T 269
           A AP      K     +G  V  TCRV G PKP++ W  + K+++     YTI      T
Sbjct: 5   ATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 64
Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             L  T     D G YT  A N  G    +G L V+
Sbjct: 65  CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQ 100

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL----TGGRYTILETGDLKITDVAFADSGE 284
           +  +G TV   CR  G P P + W+  +K L    + GR T+   G L++      D+G 
Sbjct: 396 FVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGT 455
Query: 285 YTCFARNKLGTAQGSGSLTVK 305
           Y C A N  G       L V+
Sbjct: 456 YLCIAANAGGNDSMPAHLHVR 476

>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor- Type Tyrosine-Protein Phosphatase F Length = 134

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 508 QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT- 564
           Q +  + +GS+   + WV P  +  NGV+  Y + Y++V G       +R  ++ D  + 
Sbjct: 23  QKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGE------DRGRHVVDGISR 76
Query: 565 --TSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY-----VPFKNPDNVE 609
             +S  L GLE  T+YR+ +  +T  G G ES  +       VP   P  VE
Sbjct: 77  EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVE 128

>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph Receptor A8 Protein Length = 111

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 516 GSSAFYLKWVKPEQPNGVLMGYKIK-YQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP 574
           G ++  L W +PEQPNG+++ Y+IK Y+  K  +    L+ +       TT A ++GL+P
Sbjct: 23  GQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAV-------TTRATVSGLKP 75
Query: 575 STKYRIHLAGYTKAGDGAESKYL 597
            T+Y   +   T AG G  S+ +
Sbjct: 76  GTRYVFQVRARTSAGCGRFSQAM 98

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILE----TGDLKITDVAFADSGEY 285
           +G  V  TCRV G PKP++ W  + K+++     YTI      T  L  T     D G Y
Sbjct: 22  EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 81
Query: 286 TCFARNKLGTAQGSGSLTVK 305
           T  A N  G    +G L V+
Sbjct: 82  TIMAANPQGRISCTGRLMVQ 101

>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain Length = 100

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E          TV F C A G P P + W+ NGK   Q       KV   
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
              + +E++  SD GNY C   N  G +    +++V+
Sbjct: 64  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>pdb|2DJS|A Chain A, Solution Structures Of The Fn3 Domain Of Human Ephrin Type- B Receptor 1 Length = 108

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 565
           TV  +  +     +  L W +PEQPNG+++ Y+I+Y   +  +    + R        T 
Sbjct: 10  TVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMAR------SQTN 63
Query: 566 SAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY 599
           +A++ GL P   Y + +   T AG G  S  + +
Sbjct: 64  TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCF 97

>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast Growth Factor Length = 104

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E          TV F C A G P P + W+ NGK   Q       KV   
Sbjct: 8   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 67
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
              + +E++  SD GNY C   N  G +    +++V+
Sbjct: 68  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 104

>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2 Length = 105

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E          TV F C A G P P + W+ NGK   Q       KV   
Sbjct: 9   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 68
Query: 181 R--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
              + +E++  SD GNY C   N  G +    +++V+
Sbjct: 69  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 105

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-I 182
           A P F V+P      E ++  F C+      P + W  + + + Q+    +R  G +  +
Sbjct: 375 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 434
Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAP 225
           TI  ++  D G Y   A NS G   + V++NV  H+  +   P
Sbjct: 435 TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEPLKFEP 477

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG--DLKIT 275
           AP IT   +++ T  G+++ ++C   G P P++ W  + + L      +L+ G  +L I 
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR 69
Query: 276 DVAFADSGEYTCFARNKLGTAQ 297
            V   D G YTC A + LG A+
Sbjct: 70  RVRKEDEGLYTCQACSVLGCAK 91

>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine- Rich Repeat-Containing Protein 4 Length = 103

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI-HNQKELTGG----RYTILETG 270
           +  P I +AP+D    +G+   L CR    P   V W+  N   L+      R ++L  G
Sbjct: 5   SSGPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDG 62
Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
            L  + V  +D+G YTC   N  G +  S  L V
Sbjct: 63  TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96

>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain Length = 222

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 78  DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY----FTVEPE 133
           D + QGN   SL ++ V  +D+GSYTC VS  + +  S ++ L V AAPY     T+EP 
Sbjct: 65  DLLVQGN--ASLRLQRVRVTDEGSYTCFVS--IQDFDSAAVSLQV-AAPYSKPSMTLEPN 119
Query: 134 FINAAEEETVTFECKA-SGLPEPEIHW 159
             +      VT  C +  G PE E+ W
Sbjct: 120 -KDLRPGNMVTITCSSYQGYPEAEVFW 145

>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High Affinity Immunoglobulin G Binding Length = 262

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 98/266 (36%), Gaps = 31/266 (11%)
Query: 128 FTVEPEFINAAEEETVTFECKASGLP-EPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
            T++P +++  +EETVT  C+   LP      W  NG     + P+ R         I +
Sbjct: 4   ITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYR---------ITS 54
Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAP 246
              +D+G Y C      G   +   + +  H   +          +G+ + L C  +   
Sbjct: 55  ASVNDSGEYRCQR----GLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAW-KD 109
Query: 247 KPEVNWIHNQKELTGGRYTILE-TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           K   N ++ +    G  +       +L I     + +G Y C    K        S+TVK
Sbjct: 110 KLVYNVLYYRN---GKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Query: 306 EH--THITDQPEDYEVEAGQSATFRCNA---VSDPSLKLSIVWLRGSEPIDFESEPRFVQ 360
           E     + +      +  G   T  C     +  P L+L   +  GS+ +   +      
Sbjct: 167 ELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN-----T 221
Query: 361 SNDYSLTVTKSSELDSGQYTCRAQTE 386
           S++Y +   +    DSG Y C A TE
Sbjct: 222 SSEYQILTARRE--DSGLYWCEAATE 245

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW------IHNQKELTGGRYTILETGDL 272
           P I E P D     G+   L C+  G P P + W      +   K+       +L +G L
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 273 KITDVAFA-----DSGEYTCFARNKLGTA 296
               +        D G Y C ARN LG A
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEA 98

>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam Length = 215

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD----- 271
           +AP++ + P   YT +G  V +TC VF  P   ++W  + + L    Y+ ++  +     
Sbjct: 18  YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 272 -LKITDVAFADSGEYTCFARNKLG 294
            L++T  +  D G Y C A N++G
Sbjct: 77  YLEVTPDSENDFGNYNCTAVNRIG 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	745
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-122
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-93
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-91
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-70
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-68
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-115
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-70
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-45
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-106
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-90
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-74
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-60
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-36
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-90
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-75
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-62
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-41
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-26
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	9e-90
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-54
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-53
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-18
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-89
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-77
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-88
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-70
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-86
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-61
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-61
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	8e-58
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-86
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-69
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-53
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-50
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	8e-86
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-83
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-46
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-45
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-83
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-60
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-59
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-57
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-82
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-64
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-62
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-58
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-78
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-60
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-57
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-78
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	8e-62
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-39
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-34
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-08
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-78
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-38
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-37
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-76
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-64
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-39
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-75
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-63
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-61
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-60
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-52
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-49
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-31
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-15
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-74
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-52
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-50
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-73
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-59
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-37
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-67
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-66
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-63
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-48
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-15
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-65
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-46
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-46
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-17
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-61
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-42
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-41
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-17
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-60
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-44
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-42
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-18
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-59
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-51
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-31
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-28
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-59
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-42
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-41
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-16
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-59
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	9e-44
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-40
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-59
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-42
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	9e-36
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-17
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-59
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-41
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-38
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-58
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-43
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	7e-40
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-16
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-57
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-42
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-39
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-19
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-57
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	8e-44
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-42
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	9e-17
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	8e-14
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-57
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-41
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	7e-40
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	9e-15
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-55
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-54
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-34
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-55
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-53
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-33
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-54
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-52
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-43
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-52
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-52
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-52
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-46
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-30
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-26
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-52
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-45
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	6e-40
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-15
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	7e-51
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-43
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-37
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-50
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-44
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-43
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-16
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-15
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-49
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	7e-40
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-22
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-49
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	7e-42
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	7e-38
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-49
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-35
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-48
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-40
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-37
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-11
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	9e-48
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-44
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	8e-43
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	8e-10
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-47
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-45
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-45
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	2e-46
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	2e-18
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	7e-07
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-46
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-37
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-34
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-22
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-13
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	5e-46
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	6e-46
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-24
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-46
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-39
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-45
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	4e-37
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-35
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-10
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-45
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-45
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	5e-40
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	7e-17
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-45
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-43
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-27
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-25
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-45
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-35
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-27
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-20
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-45
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-38
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-37
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-45
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-39
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-23
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-44
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-39
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-34
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-16
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-09
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-44
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-38
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-27
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-09
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-42
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-40
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-30
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-07
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-41
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-41
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-35
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	5e-34
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-40
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-34
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-21
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-38
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-33
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-30
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-15
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-13
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-35
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-33
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-27
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-35
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-28
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-24
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-35
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	8e-29
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	8e-28
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-10
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-33
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-20
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	5e-15
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-09
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-33
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-31
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-27
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-08
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-33
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-23
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-18
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-17
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-32
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	8e-28
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	6e-26
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-31
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-24
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-20
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-07
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	7e-31
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	3e-16
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	4e-06
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-30
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-30
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	9e-29
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-09
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	6e-30
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	5e-27
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	7e-21
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-11
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	6e-06
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-29
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	5e-23
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	7e-22
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-06
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	3e-29
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	7e-27
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-13
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	6e-29
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-22
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	8e-21
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	7e-10
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-29
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-23
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	9e-18
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-28
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-21
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-17
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-16
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	2e-28
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	4e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-28
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	6e-24
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-23
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-10
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	4e-28
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	6e-13
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	3e-05
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-27
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-23
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	8e-19
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-17
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-27
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	7e-21
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-20
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-09
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	7e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-27
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-24
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-23
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-05
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	4e-27
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	6e-12
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-27
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-21
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-18
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-15
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-27
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-21
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	4e-16
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-16
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	9e-27
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	5e-21
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-16
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	5e-15
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-26
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	4e-20
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-17
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-14
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-26
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-24
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-21
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	9e-12
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-26
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-21
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-17
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-14
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-26
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-22
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-17
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-14
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-26
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-18
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-16
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	5e-14
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	3e-26
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	5e-07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-26
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-25
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-22
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-08
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	5e-26
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-20
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-16
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-15
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	7e-26
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	9e-22
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-21
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-08
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-25
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-18
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-14
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-14
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-25
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-19
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	8e-16
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	8e-15
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-25
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-20
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-17
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-16
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-25
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-22
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-20
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-18
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-25
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-23
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-19
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	9e-09
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-25
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-21
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-16
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-15
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	8e-25
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	1e-16
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	3e-16
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	9e-25
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	5e-20
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-16
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	5e-06
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-24
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-22
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-14
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-14
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	1e-24
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-21
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-13
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-24
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	4e-21
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-16
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	8e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-24
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-24
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-23
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-19
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	5e-24
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	2e-14
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	4e-07
2ens_A	96	Advanced glycosylation END product-specific recept	1e-23
2ens_A	96	Advanced glycosylation END product-specific recept	4e-20
2ens_A	96	Advanced glycosylation END product-specific recept	3e-16
2ens_A	96	Advanced glycosylation END product-specific recept	9e-13
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	2e-23
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	2e-06
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-23
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-19
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-18
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	6e-16
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	5e-23
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	6e-14
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	4e-05
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	7e-23
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	7e-15
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-14
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	1e-22
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	8e-18
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	3e-05
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-22
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	9e-19
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-16
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-14
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-22
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	4e-17
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	1e-10
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	2e-22
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	6e-16
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	3e-07
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-22
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	7e-19
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-12
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-09
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	1e-21
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	3e-10
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	1e-08
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	1e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-21
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	8e-17
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	6e-16
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-13
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	2e-21
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	9e-07
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-21
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-21
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	7e-19
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	7e-18
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	6e-07
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	7e-21
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-20
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	7e-16
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-15
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	1e-20
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	3e-05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-20
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	8e-19
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-14
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-14
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	2e-20
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	4e-18
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	3e-07
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-20
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-19
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-14
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-09
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	2e-20
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	2e-20
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	4e-16
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	7e-05
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-20
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-13
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-13
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-11
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	3e-20
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	1e-06
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-20
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	8e-17
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-13
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-11
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	3e-20
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	8e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	4e-20
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-17
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-09
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	4e-08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-06
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	5e-20
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	5e-08
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	8e-20
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	6e-16
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	1e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	9e-20
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	7e-18
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	8e-17
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-12
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-19
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-14
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-13
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-11
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	2e-19
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	1e-18
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	1e-08
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-19
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-18
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-14
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-13
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-19
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-19
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-07
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-19
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	8e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	4e-19
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-14
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	1e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-11
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-19
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-15
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	8e-13
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	5e-19
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	9e-14
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-13
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	8e-13
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-19
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-14
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	7e-14
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-19
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-13
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-12
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	4e-12
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-19
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-14
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-11
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-08
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	7e-19
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	2e-18
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	6e-08
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-19
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	5e-12
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-12
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-04
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	1e-18
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	1e-18
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	2e-14
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	4e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-18
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	1e-15
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-09
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	2e-18
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-18
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	5e-13
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-12
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-11
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	4e-18
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	4e-07
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-18
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-13
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-12
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	9e-11
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	5e-18
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	1e-07
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	6e-18
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-13
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-10
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-18
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-16
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-12
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-12
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	7e-18
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-16
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	6e-14
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	7e-18
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	8e-14
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-13
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-13
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	7e-18
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	7e-07
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	9e-18
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	8e-17
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	4e-08
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	2e-17
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	8e-14
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	2e-05
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	3e-17
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	8e-12
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	5e-17
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	1e-06
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	6e-17
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-11
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-16
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-15
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	4e-12
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	9e-11
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-16
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	8e-14
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	3e-13
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-16
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-13
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-12
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-11
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-16
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-13
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-12
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-11
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-16
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-15
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-13
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-09
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	3e-16
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	1e-10
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	5e-05
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-16
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-15
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-11
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-04
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	6e-16
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	2e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	8e-16
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	4e-14
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-06
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	2e-15
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	1e-13
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	6e-07
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-15
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	4e-13
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-11
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	9e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-15
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-09
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	5e-15
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	8e-11
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	6e-15
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	5e-07
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	8e-15
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	4e-12
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	5e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	9e-15
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	8e-14
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-13
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	9e-15
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	8e-10
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	4e-06
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-14
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	3e-10
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	2e-14
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	6e-10
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	2e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-14
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	4e-13
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-08
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	7e-05
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-14
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-14
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-09
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-14
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-12
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-11
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	7e-14
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	6e-09
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	7e-14
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	3e-05
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	2e-04
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	8e-14
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	1e-12
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	2e-06
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	2e-13
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	6e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-13
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-11
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	8e-10
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-13
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	5e-13
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	4e-12
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	5e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	8e-04
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	3e-13
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	3e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-13
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	9e-12
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	9e-11
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	6e-05
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	6e-13
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	4e-09
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	9e-13
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	6e-05
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-12
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	6e-07
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	3e-12
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	6e-10
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	8e-12
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	3e-07
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	2e-11
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	2e-10
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	2e-11
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	5e-10
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	2e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-11
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	6e-11
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-08
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-06
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	3e-11
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	4e-07
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	7e-11
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	9e-11
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-10
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-08
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-10
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	6e-08
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-07
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	4e-10
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	2e-06
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	7e-10
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	1e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-09
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	3e-09
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-08
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	2e-09
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	4e-09
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	3e-09
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	1e-04
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	3e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	3e-09
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	6e-07
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	1e-06
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	1e-05
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	4e-09
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	5e-09
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	8e-06
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	4e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	5e-09
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	2e-08
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-07
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	6e-07
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	5e-09
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	1e-08
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	5e-09
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	7e-07
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	6e-09
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	6e-04
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	1e-08
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	1e-08
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	1e-08
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-06
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	5e-06
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	1e-04
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	2e-08
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	3e-07
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	1e-05
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	2e-08
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	4e-08
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	1e-07
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	1e-06
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	4e-08
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	8e-06
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	5e-08
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	5e-08
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	6e-08
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	2e-05
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	6e-08
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	3e-07
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	9e-05
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	7e-08
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	8e-08
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	3e-05
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	9e-08
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	3e-07
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	1e-07
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	1e-07
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	6e-06
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	1e-07
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	1e-07
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	6e-05
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	2e-07
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	2e-07
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	2e-07
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	7e-07
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	2e-05
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	3e-04
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	2e-07
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	6e-05
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	3e-07
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	3e-05
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	3e-07
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	3e-07
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	3e-05
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	3e-07
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	1e-06
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	2e-05
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	8e-04
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	3e-07
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-07
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	4e-07
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	2e-05
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	4e-05
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	5e-04
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	4e-07
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	4e-07
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	6e-06
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	5e-07
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	5e-07
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	3e-06
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	5e-07
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	4e-05
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	3e-04
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	5e-07
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	6e-07
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	3e-04
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	6e-07
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	2e-06
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	5e-04
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	7e-07
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	2e-05
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	8e-07
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	9e-06
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	2e-06
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	2e-04
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	2e-06
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	6e-05
2crm_A	120	Fibronectin type-III domain containing protein 3A;	3e-06
2crm_A	120	Fibronectin type-III domain containing protein 3A;	6e-04
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	4e-06
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	4e-06
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	9e-06
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	4e-06
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	2e-04
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	7e-06
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	7e-05
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	8e-06
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	8e-06
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	6e-04
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	8e-06
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	9e-06
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	1e-05
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	1e-05
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	1e-05
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	1e-05
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	2e-05
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	2e-05
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	2e-05
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	6e-05
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	2e-05
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	2e-05
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	3e-05
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	6e-04
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	3e-05
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	3e-05
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	3e-05
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	1e-04
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	3e-05
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	4e-05
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	5e-05
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	5e-05
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	1e-04
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	1e-04
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	5e-05
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	6e-04
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	6e-05
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	3e-04
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	1e-04
2erj_C	247	Cytokine receptor common gamma chain; immune syste	1e-04
2crz_A	110	Fibronectin type-III domain containing protein 3A;	1e-04
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	1e-04
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	1e-04
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	2e-04
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	3e-04
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	4e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	5e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	7e-04
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	6e-04
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	6e-04
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	7e-04
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	7e-04
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	7e-04
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	8e-04
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	8e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  375 bits (965), Expect = e-122
 Identities = 94/382 (24%), Positives = 156/382 (40%), Gaps = 14/382 (3%)

Query: 28  QNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNY 85
                P    +          +     C   GT   +  W+KD   I P     ++    
Sbjct: 192 SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 251

Query: 86  GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF-INAAEEETVT 144
             +L +  V   D G YTC  SN  G+  S S  L V   P F  + E      ++E   
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR 310

Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-TIENLRKSDTGNYGCNATNSL 203
           +ECK  G PE ++ W  +   I ++       V    +  + NL   D+G+Y C A N+ 
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370

Query: 204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGG 262
           G       + V    P   + P    T+ G  V L C + G P  +V+W  +++EL +G 
Sbjct: 371 GSASSSTSLKVKE-PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK 429

Query: 263 RYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV 319
           +Y I+       + I +V  AD GEY C A N +G+    GS+T+K       +  D   
Sbjct: 430 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDIST 489

Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--YSLTVTKSSELDSG 377
             G+    +        +   + W +    I  ES+  ++  ++   +L  +++   ++G
Sbjct: 490 VVGEEVQLQATIEGAEPIS--VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547

Query: 378 QYTCRAQTELDFIEAQATLTVQ 399
           +YTC+ + E    E  ATL+V 
Sbjct: 548 KYTCQIKNEAGTQECFATLSVL 569

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  300 bits (770), Expect = 4e-93
 Identities = 87/388 (22%), Positives = 154/388 (39%), Gaps = 21/388 (5%)

Query: 41  KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSD 98
           K         V   C   G+   Q  W KDG  +        S  +   +L I   + S 
Sbjct: 109 KDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSH 168

Query: 99  QGSYTCEVSNGVGEAKSYSIDLSVL---AAPYFTVEPEFINAAEEETVTFECKASGLPEP 155
            G Y C  SN +G A S S  L++      P+F ++P  ++ A  E+ TF+C  +G    
Sbjct: 169 VGQYNCSASNPLGTASS-SAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI 227

Query: 156 EIHWVHNGKPISQAPPNPRRKVGPNRI-TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           +I W  + + I          V      T+  + K D G Y C A+N  G       + V
Sbjct: 228 KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287

Query: 215 LAHAPEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD- 271
               P   +  +    V   +     C++ G+P+ +V W  ++ E+    ++ +      
Sbjct: 288 QE-PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV 346

Query: 272 --LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
             L++ +++  DSG+YTC A N  G+A  S SL VKE      +P   E   G      C
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC 406

Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY--SLTVTKSSELDSGQYTCRAQTEL 387
                P     + W +    +    +   + S ++  S+ +      D G+Y C+A  ++
Sbjct: 407 ELQGTP--PFQVSWHKDKRELR-SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 463

Query: 388 DFIEAQATLTVQVP---LEAPSNFTLIQ 412
                  ++T++ P   ++  S+ + + 
Sbjct: 464 GSDTCVGSITLKAPPRFVKKLSDISTVV 491

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  295 bits (758), Expect = 2e-91
 Identities = 90/386 (23%), Positives = 152/386 (39%), Gaps = 20/386 (5%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGS 101
            A   + + L C   GTP  +  W K+   +  +   ++   N   SL+I  V+ SD G 
Sbjct: 16  EAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGE 75

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIH 158
           YTC+  N VG   S S  L +      P F  + + ++      V FEC+ +G    ++ 
Sbjct: 76  YTCKAENSVGAVAS-SAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVS 134

Query: 159 WVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH 217
           W  +G+ +          +     + I    +S  G Y C+A+N LG       + +  H
Sbjct: 135 WYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH 194

Query: 218 --APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGD--- 271
              P     P       G++    C V G    ++ W  + +E+  GG Y +    +   
Sbjct: 195 EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 254

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYE-VEAGQSATFRCN 330
           L +  V   D+G+YTC+A N  G    S  L V+E      + E    V+  +   + C 
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314

Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
               P  ++ ++W +    I   S+ R     +   L +   S  DSG YTC A      
Sbjct: 315 IGGSP--EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 372

Query: 390 IEAQATLTVQVP---LEAPSNFTLIQ 412
             +  +L V+ P    + P     ++
Sbjct: 373 ASSSTSLKVKEPPVFRKKPHPVETLK 398

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  240 bits (615), Expect = 1e-70
 Identities = 69/278 (24%), Positives = 113/278 (40%), Gaps = 16/278 (5%)

Query: 40  RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFS 97
               +  +++     C  GG+P  + +W KD   I  S +           L + ++   
Sbjct: 298 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 357

Query: 98  DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
           D G YTCE  N  G A S S  L V   P F  +P  +   +   V  EC+  G P  ++
Sbjct: 358 DSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQV 416

Query: 158 HWVHNGKPISQAPPNPRRKVGPN----RITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
            W  + + +       + K+        I I N+  +D G Y C A+N +G       + 
Sbjct: 417 SWHKDKREL---RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT 473

Query: 214 VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILE--- 268
           + A  P   +   D  TV G+ V L   + GA    V W  ++ E+        I     
Sbjct: 474 LKA-PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532

Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
              L+ +    A++G+YTC  +N+ GT +   +L+V E
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  233 bits (595), Expect = 7e-68
 Identities = 80/290 (27%), Positives = 117/290 (40%), Gaps = 13/290 (4%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-R 181
           +  PYF    E + AA  E +T +CK  G PE  I W      +  AP    +       
Sbjct: 3   MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH--APEITEAPKDEYTVDGKTVVLT 239
           + I  +  SD G Y C A NS+G V     + +      P      KD +   G  V   
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122

Query: 240 CRVFGAPKPEVNWIHNQKEL-TGGRYTIL---ETGDLKITDVAFADSGEYTCFARNKLGT 295
           CR+ G+   +V+W  + + L                L+I     +  G+Y C A N LGT
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182

Query: 296 AQGSGSLTVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF 352
           A  S  LT+ EH        +P   ++  G+S TF+C+        + I W + +  I  
Sbjct: 183 ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTA--PIKITWAKDNREIRP 240

Query: 353 ESEPRFVQSND-YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
               +     +  +LTV K ++ D+GQYTC A          A L VQ P
Sbjct: 241 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 290

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  352 bits (906), Expect = e-115
 Identities = 100/376 (26%), Positives = 155/376 (41%), Gaps = 23/376 (6%)

Query: 44  VALRNKKVELFCI-FGGTPLPQTIWSKDGVPI--NPSDRISQGNYGKSLIIKHVEFS--- 97
           V +R   V L C       +P   W KDG+ +     DR  Q   G SL+I+++  S   
Sbjct: 32  VTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG-SLLIQNILHSRHH 90

Query: 98  --DQGSYTCEVSNG-VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPE 154
             D+G Y CE S G  G   S +  + V     F  + E I A   +TV  +C+  G P 
Sbjct: 91  KPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPM 150

Query: 155 PEIHWVHNGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATNSLGY-VYKDVYV 212
           P IHW  N + ++  P + R  V P+  + I  L+  D+G Y C+A N        +  V
Sbjct: 151 PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEV 210

Query: 213 NVLA-----HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYT 265
            +L+           + P +   ++GK  VL C V G P P   W+  ++ +     +Y+
Sbjct: 211 RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS 270

Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSA 325
           +L   +L I++V   DSG YTC    K      S  LTV       + P +         
Sbjct: 271 LLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDI 330

Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
            F C     P    ++ W++  + +       F      +L +    + D G Y C A+ 
Sbjct: 331 EFECAVSGKP--VPTVNWMKNGDVV--IPSDYFQIVGGSNLRILGVVKSDEGFYQCVAEN 386

Query: 386 ELDFIEAQATLTVQVP 401
           E    ++ A L V  P
Sbjct: 387 EAGNAQSSAQLIVPKP 402

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  234 bits (599), Expect = 3e-70
 Identities = 83/329 (25%), Positives = 125/329 (37%), Gaps = 29/329 (8%)

Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKP 165
            + +  +  +        + +F  EP          V   C A      P I W  +G  
Sbjct: 4   GSELESS-HHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62

Query: 166 ISQAPPNPRRKVGPN------RITIENLRKSDTGNYGCNATNSLG--YVYKDVYVNVLAH 217
           ++    + R++  PN       I      K D G Y C A+       + +   V V A 
Sbjct: 63  LALG-MDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV-AG 120

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT----GGRYTILETGDLK 273
                   +      G TV+L C V G P P ++W  NQ++L       R  +L +G L+
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180

Query: 274 ITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKE------HTHITDQPEDYEVEAGQSAT 326
           I+ +   DSG Y C ARN   T  G    + +          +   +P +     G+ A 
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV 240

Query: 327 FRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTE 386
             C     P    S  WLRG E I   S  ++      +L ++  ++ DSG YTC    +
Sbjct: 241 LECCVSGYP--PPSFTWLRGEEVIQLRS-KKYSLLGGSNLLISNVTDDDSGTYTCVVTYK 297

Query: 387 LDFIEAQATLTVQVP---LEAPSNFTLIQ 412
            + I A A LTV VP   L  PSN    +
Sbjct: 298 NENISASAELTVLVPPWFLNHPSNLYAYE 326

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  165 bits (418), Expect = 9e-45
 Identities = 56/211 (26%), Positives = 85/211 (40%), Gaps = 10/211 (4%)

Query: 9   YKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWS 68
            + GN   + +++      Q     +   V      A+  K   L C   G P P   W 
Sbjct: 202 TRTGNEAEVRILSDPGLHRQLYFLQRPSNVI-----AIEGKDAVLECCVSGYPPPSFTWL 256

Query: 69  KDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYF 128
           +    I    +      G +L+I +V   D G+YTC V+       S S +L+VL  P+F
Sbjct: 257 RGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENI-SASAELTVLVPPWF 315

Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENL 187
              P  + A E   + FEC  SG P P ++W+ NG  +    P+   ++     + I  +
Sbjct: 316 LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV---IPSDYFQIVGGSNLRILGV 372

Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHA 218
            KSD G Y C A N  G       + V   A
Sbjct: 373 VKSDEGFYQCVAENEAGNAQSSAQLIVPKPA 403

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  343 bits (880), Expect = e-106
 Identities = 105/480 (21%), Positives = 165/480 (34%), Gaps = 47/480 (9%)

Query: 7   SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
            E ++       VI   IS   +             +    +  + L C   G P+P   
Sbjct: 225 GETRLSATKGRLVITEPIS---SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFR 281

Query: 67  WSKDGVPINPSDRISQG----NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
           W K          +           +LIIK     D G Y C V+N VG   S    L+V
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVETVLTV 340

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
            A     ++P            F C+ +G P   + W+ +GK I             + +
Sbjct: 341 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH---------SESVL 391

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH--APEITEAPKDEYTVDGKTVVLTC 240
            IE+++K D G Y C   N          + +      P I +A ++E    G +V L C
Sbjct: 392 RIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKC 451

Query: 241 RVFGAPKPEVNWIHNQKEL-TGGRYTILE--------TGDLKITDVAFADSGEYTCFARN 291
              G P PE++W  + K++    RY + +           L IT V   D G Y C A++
Sbjct: 452 VAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKS 511

Query: 292 KLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID 351
           K+G A+ S  L V    +I  Q E   + AG++    C     P    SIVW R +  + 
Sbjct: 512 KVGVAEHSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYP--IDSIVWERDNRALP 568

Query: 352 FESEPRFVQSNDYSLTVTKSSEL-DSGQYTCRAQTEL-DFIEAQATLTVQV-PLEAPSNF 408
                +     + +L +       D   YTC A+ +          + V V P   P  F
Sbjct: 569 INR--KQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAF 626

Query: 409 TLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGE---GSIRELIVNKGESTTT 465
                   +   +  +        G      +  WT  DG+     +       G   + 
Sbjct: 627 EEGPAQVGQYLTLHCSV------PGGDLPLNI-DWT-LDGQAISEDLGITTSRVGRRGSV 678

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  299 bits (768), Expect = 2e-90
 Identities = 99/382 (25%), Positives = 149/382 (39%), Gaps = 28/382 (7%)

Query: 41  KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-------SLIIKH 93
           ++E       V L C+ GG P P+  W  DG  I  +DR   G Y          L I  
Sbjct: 437 QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITS 496

Query: 94  VEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLP 153
           V  +D G Y C   + VG A  +S  L+V   PY   + E       ET+   C  +G P
Sbjct: 497 VHANDGGLYKCIAKSKVGVA-EHSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYP 554

Query: 154 EPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENL-RKSDTGNYGCNATNSLGYVYK-DV 210
              I W  + + +   P N ++KV PN  + IEN+ R SD   Y C A N  GY  +  +
Sbjct: 555 IDSIVWERDNRAL---PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSL 611

Query: 211 YVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGG-----RY 264
            V V+     I  A ++     G+ + L C V G   P  ++W  + + ++         
Sbjct: 612 EVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR 671

Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQS 324
                  L I  V  + +G +TC ARN  G  Q +  L V        +P D     G  
Sbjct: 672 VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSD 731

Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP----RFVQSNDYSLTVTKSSELDSGQYT 380
           A   C A   P  K  + W +       E +       ++  + +L V    + + G Y 
Sbjct: 732 AKVECKADGFP--KPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYL 789

Query: 381 CRAQTELDFIEAQAT-LTVQVP 401
           C A   +    +    ++VQ  
Sbjct: 790 CEAINGIGSGLSAVIMISVQAH 811

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  255 bits (653), Expect = 4e-74
 Identities = 73/393 (18%), Positives = 130/393 (33%), Gaps = 41/393 (10%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSD---- 98
               +   E+ C   G P+P+ IW + DG  +     + Q +    L+       D    
Sbjct: 50  DFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQE 109

Query: 99  --QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA---SGLP 153
                Y C   N  G   S  + +  + A Y+  +    +     +   +C         
Sbjct: 110 VHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADF 169

Query: 154 EPEIHWVHNGKPI--SQAPPNPRRKVGPN-RITIENLRKSDT-GNYGCNATNSLGYVYKD 209
              + W  + +      A  + +  V P+  + I  +   D   +Y C   + L    + 
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 229

Query: 210 --------VYVNVLAHAPEITEAPKDEYTV--DGKTVVLTCRVFGAPKPEVNWIHNQKEL 259
                   +   + +  P++    K +        T+ L C   G P P   W    +  
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGT 289

Query: 260 TGGRYTILET------GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ 313
           T  +  +L        G L I D    DSG+Y C   N +G       LTV         
Sbjct: 290 TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID 349

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSE 373
           P    V+ G+ A F C    +P    ++ W++  + I           ++  L +    +
Sbjct: 350 PPTQTVDFGRPAVFTCQYTGNP--IKTVSWMKDGKAI---------GHSESVLRIESVKK 398

Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
            D G Y C  + + +  EA A L +    + P 
Sbjct: 399 EDKGMYQCFVRNDRESAEASAELKLGGRFDPPV 431

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  215 bits (550), Expect = 7e-60
 Identities = 65/348 (18%), Positives = 110/348 (31%), Gaps = 34/348 (9%)

Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTVEPE-FINAAEEETVTFE 146
           + + +        +        G    + +   +    P F  EP   I+ +       E
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 147 CKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDT------GNYGCNAT 200
           CKASG P PEI W+ +        P  R+     ++     R  D         Y C A 
Sbjct: 61  CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120

Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV---FGAPKPEVNWIHNQK 257
           N  G +           A         E+ + G + V+ C +          V+W  +++
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE 180

Query: 258 EL------TGGRYTILETGDLKITDVAFADS-GEYTCFARNKLGTAQGSGS---LTVKEH 307
           E         G+Y +L +G+L I +V   D    Y C  +++L       +     V   
Sbjct: 181 ENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE 240

Query: 308 THITDQP--------EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF- 358
              +  P        +        +    C A   P       W +  E    +      
Sbjct: 241 PISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYP--VPVFRWYKFIEGTTRKQAVVLN 298

Query: 359 --VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEA 404
             V+    +L +  +   DSG+Y C     +     +  LTV  PL A
Sbjct: 299 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 346

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  144 bits (365), Expect = 5e-36
 Identities = 43/253 (16%), Positives = 74/253 (29%), Gaps = 17/253 (6%)

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA-HAPEITEAPKDEYTVD-GKTVVLTC 240
            + N R      +   A  + G               P   + P +           + C
Sbjct: 2   NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC 61

Query: 241 RVFGAPKPEVNWIHNQKELTG---GRYTILETGDLKITDV------AFADSGEYTCFARN 291
           +  G P PE+ WI +     G   G   I   G L               +  Y C ARN
Sbjct: 62  KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARN 121

Query: 292 KLGTAQGSG-SLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS-DPSLKLSIVWLRGSEP 349
           + G+       +      +         V  G SA  +C   S        + W    E 
Sbjct: 122 QFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEE 181

Query: 350 IDF---ESEPRFVQSNDYSLTVTKSSELDS-GQYTCRAQTELDFIEAQATLTVQVPLEAP 405
             F   E + +++      L + +    D    Y CR +  L      +    ++ +  P
Sbjct: 182 NYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEP 241

Query: 406 SNFTLIQVIDAKK 418
            +  + +V+   K
Sbjct: 242 ISSAVPKVVSLAK 254

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGN-----YGKSLIIKHVEFSD 98
              +    ++ C   G P PQ  W K         +  + +        +L + +++ ++
Sbjct: 725 AFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTN 784

Query: 99  QGSYTCEVSNGVGEAKSYSIDLSVLAAPYF 128
           +G Y CE  NG+G   S  I +SV A  + 
Sbjct: 785 EGYYLCEAINGIGSGLSAVIMISVQAHHHH 814

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  296 bits (759), Expect = 1e-90
 Identities = 67/382 (17%), Positives = 124/382 (32%), Gaps = 31/382 (8%)

Query: 28  QNRHAPKQQYVTRKKEVALRNKK-VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYG 86
                P + ++T      + ++  V L C          +W  +   +  S R+   N  
Sbjct: 283 TVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDN 341

Query: 87  KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY-FTVEPEFINAAEEETVTF 145
           ++L +  V  +D G Y C + N +    S  + L+VL  P   T+ P +        ++ 
Sbjct: 342 RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSL 401

Query: 146 ECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY 205
            C A+  P  +  W+ +G                  + I N+ + ++G Y C A NS   
Sbjct: 402 SCHAASNPPAQYSWLIDGNIQQHT----------QELFISNITEKNSGLYTCQANNSASG 451

Query: 206 VYKDVYVNVLAHA---PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG 262
             +     +   A        +   +   D   V  TC         + W++ Q      
Sbjct: 452 HSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSP 511

Query: 263 RYTIL-ETGDLKITDVAFADSGEYTCFARNKLGTAQGSG-SLTVKEH-THITDQPEDYEV 319
           R  +      L + +V   D+  Y C  +N +   +    +L V          P D   
Sbjct: 512 RLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSY 571

Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQY 379
            +G +    C++ S+PS      W     P                L + K +  ++G Y
Sbjct: 572 LSGANLNLSCHSASNPS--PQYSWRINGIPQQHTQ----------VLFIAKITPNNNGTY 619

Query: 380 TCRAQTELDFIEAQATLTVQVP 401
            C               ++ V 
Sbjct: 620 ACFVSNLATGRNNSIVKSITVS 641

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  255 bits (652), Expect = 3e-75
 Identities = 84/386 (21%), Positives = 132/386 (34%), Gaps = 30/386 (7%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI 90
             PK    +   +       V   C          +W  +   +  S R+   N  ++L 
Sbjct: 109 ELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLT 167

Query: 91  IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP-YFTVEPEFINAAEEETVTFECKA 149
           + +V  +D  SY CE  N V   +S S+ L+VL  P   T+ P   +    E +   C A
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHA 227

Query: 150 SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD 209
           +  P  +  W  NG                  + I N+  +++G+Y C A NS   + + 
Sbjct: 228 ASNPPAQYSWFVNGTFQQSTQ----------ELFIPNITVNNSGSYTCQAHNSDTGLNRT 277

Query: 210 --VYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTI 266
               + V A  P+      +   V D   V LTC         + W++NQ      R  +
Sbjct: 278 TVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQL 337

Query: 267 LETGD-LKITDVAFADSGEYTCFARNKLGTAQGSG-SLTVKEH-THITDQPEDYEVEAGQ 323
                 L +  V   D G Y C  +N+L         L V       T  P       G 
Sbjct: 338 SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGV 397

Query: 324 SATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
           + +  C+A S+P       WL                 +   L ++  +E +SG YTC+A
Sbjct: 398 NLSLSCHAASNP--PAQYSWLIDGNIQ----------QHTQELFISNITEKNSGLYTCQA 445

Query: 384 QTELDFIEAQATLTVQVPLEAPSNFT 409
                        T+ V  E P    
Sbjct: 446 NNSASGHSRTTVKTITVSAELPKPSI 471

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  218 bits (556), Expect = 8e-62
 Identities = 72/386 (18%), Positives = 122/386 (31%), Gaps = 45/386 (11%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPIN-------------------PSDRISQGNY 85
               K+V L        L    W K                          S R      
Sbjct: 11  VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70

Query: 86  GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA--PYFTVEPEFINAAEEETV 143
             SL+I+++  +D G YT  V       +  +    V                  +++ V
Sbjct: 71  A-SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAV 129

Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--ITIENLRKSDTGNYGCNATN 201
            F C+          W  N + +   P +PR ++      +T+ N+ ++DT +Y C   N
Sbjct: 130 AFTCEPETQD-ATYLWWVNNQSL---PVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQN 185

Query: 202 SLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT 260
            +     D V +NVL      T +P +     G+ + L+C     P  + +W  N     
Sbjct: 186 PVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ 245

Query: 261 GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH----ITDQPED 316
                   T +L I ++   +SG YTC A N       +   T+  +             
Sbjct: 246 -------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNS 298

Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDS 376
             VE   +    C          + +W   ++ +      +    N  +LT+   +  D 
Sbjct: 299 NPVEDEDAVALTCEPEIQN---TTYLWWVNNQSLPVSPRLQLSNDNR-TLTLLSVTRNDV 354

Query: 377 GQYTCRAQTELDFIEAQ-ATLTVQVP 401
           G Y C  Q EL    +    L V   
Sbjct: 355 GPYECGIQNELSVDHSDPVILNVLYG 380

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  159 bits (403), Expect = 3e-41
 Identities = 56/301 (18%), Positives = 94/301 (31%), Gaps = 36/301 (11%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHW----------------VHNGKPISQAPP 171
            T+E    N AE + V               W                +   +       
Sbjct: 2   LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAY 61

Query: 172 NPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYK-DVYVNVLAHAPEITEAPKDEY 229
           + R  + PN  + I+N+ ++DTG Y  +   S     +      V    P+ + +  +  
Sbjct: 62  SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSK 121

Query: 230 TVD-GKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGDLKITDVAFADSGEYT 286
            V+    V  TC           W  N + L  +           L + +V   D+  Y 
Sbjct: 122 PVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYK 180

Query: 287 CFARNKLGTAQGSG-SLTVKEH-THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
           C  +N +   +     L V       T  P +    +G++    C+A S+P       W 
Sbjct: 181 CETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNP--PAQYSWF 238

Query: 345 RGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEA 404
                        F QS    L +   +  +SG YTC+A      +      T+ V  E 
Sbjct: 239 VNG---------TFQQSTQ-ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP 288

Query: 405 P 405
           P
Sbjct: 289 P 289

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  112 bits (281), Expect = 8e-26
 Identities = 33/210 (15%), Positives = 59/210 (28%), Gaps = 28/210 (13%)

Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT------------------- 260
           ++T         +GK V+L            +W   ++                      
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 261 -GGRYTILETGDLKITDVAFADSGEYTCFARNKL-GTAQGSGSLTVKEHT--HITDQPED 316
             GR  I     L I ++   D+G YT           + +G   V              
Sbjct: 61  YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120

Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDS 376
             VE   +  F C   +      + +W   ++ +      +    N  +LT+   +  D+
Sbjct: 121 KPVEDKDAVAFTCEPETQD---ATYLWWVNNQSLPVSPRLQLSNGN-RTLTLFNVTRNDT 176

Query: 377 GQYTCRAQTELDFIE-AQATLTVQVPLEAP 405
             Y C  Q  +         L V    +AP
Sbjct: 177 ASYKCETQNPVSARRSDSVILNVLYGPDAP 206

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  286 bits (734), Expect = 9e-90
 Identities = 62/402 (15%), Positives = 123/402 (30%), Gaps = 26/402 (6%)

Query: 12  GNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG 71
            +  +++     +  +    +    Y     EV   +  + L  +         +W    
Sbjct: 28  SSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD-VSASITLQVLVDAPGNISCLWVFKH 86

Query: 72  VPINPSDRI-SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV 130
             +N       Q     S++I  +  +  G Y   + +      +    +S+     +T+
Sbjct: 87  SSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTL 145

Query: 131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS 190
              +    E +     C +  +PEP + WV                V      +  L  +
Sbjct: 146 RRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGT 204

Query: 191 DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCR-VFGAPKPE 249
           D     C A N LG     ++   L             +   G+ + + C+ V       
Sbjct: 205 D---IRCCARNELGRECTRLFTIDLN--QTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFG 259

Query: 250 VNWIHNQKELTGGRY----------TILETGDLKITDVAFADSGEYTCFARNKLGTAQGS 299
           + W    K L  G Y          T++      ++ VA  D+G YTC +         S
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---S 316

Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
             +T+ E   I       + E  Q   F  +       ++   W    +    E   +  
Sbjct: 317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE---QKG 373

Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
             N YS++   + +   G+Y   A+ +        TL ++  
Sbjct: 374 LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  191 bits (487), Expect = 3e-54
 Identities = 41/322 (12%), Positives = 90/322 (27%), Gaps = 27/322 (8%)

Query: 91  IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS 150
                     SY     +           L    +     E   +      ++T +    
Sbjct: 19  NNDSSVGKSSSYPMVSESPEDLG----CALRP-QSSGTVYEAAAVEVDVSASITLQVLVD 73

Query: 151 GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV 210
                   WV     ++  P    +  G   + I  + ++  G Y     +         
Sbjct: 74  APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133

Query: 211 YVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL---TGGRYTIL 267
            V++       T      +        L C     P+P V W+    +          ++
Sbjct: 134 TVSIRN-TLLYTLRRPY-FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVV 191

Query: 268 ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATF 327
           +  +  + ++      +  C ARN+LG    +   T+  +           ++ G+    
Sbjct: 192 KKEEKVLHEL---FGTDIRCCARNELGREC-TRLFTIDLNQTPQTTLPQLFLKVGEPLWI 247

Query: 328 RCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSND-------YSLTVTKSSELDSGQY 379
           RC AV  +      + W   ++ ++  +       +            V+  +  D+G Y
Sbjct: 248 RCKAVHVNH--GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305

Query: 380 TCRAQTELDFIEAQATLTVQVP 401
           TC +          A +T+   
Sbjct: 306 TCSSSKH---PSQSALVTIVEK 324

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  189 bits (480), Expect = 3e-53
 Identities = 43/292 (14%), Positives = 80/292 (27%), Gaps = 20/292 (6%)

Query: 34  KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-SLIIK 92
              Y  R+        +  L CI    P P   W             S     K   ++ 
Sbjct: 140 TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH 199

Query: 93  HVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SG 151
            +  +D     C   N +G     +   ++            +     E +   CKA   
Sbjct: 200 ELFGTD---IRCCARNELGRE--CTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHV 254

Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-------TIENLRKSDTGNYGCNATNSLG 204
                + W    K + +           NR         + ++ ++DTG Y C+++    
Sbjct: 255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS 314

Query: 205 YVYKDVYVNVLAHAPEITEAPKDE-YTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGG 262
                  V ++     I      E Y +D  +    + R    P+    W  ++K     
Sbjct: 315 QS---ALVTIV-EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370

Query: 263 RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP 314
           +  +     +          GEY   A N         +L ++  T      
Sbjct: 371 QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHHH 422

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 87.8 bits (217), Expect = 1e-18
 Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 10/155 (6%)

Query: 261 GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVE 320
                 +   + K  D +   S  Y   + +         +L  +  +    +    EV+
Sbjct: 7   LPVIKCVLI-NHKNNDSSVGKSSSYPMVSESPEDLG---CALRPQS-SGTVYEAAAVEVD 61

Query: 321 AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT 380
              S T +    +     +S +W+     ++ +           S+ + K +E  +G+Y 
Sbjct: 62  VSASITLQVLVDAPG--NISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYL 119

Query: 381 CRAQTELDFIEAQATLTVQVPL---EAPSNFTLIQ 412
              Q+E        T++++  L        F  ++
Sbjct: 120 LFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME 154

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  281 bits (720), Expect = 3e-89
 Identities = 84/302 (27%), Positives = 125/302 (41%), Gaps = 18/302 (5%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS---QGNYGK 87
             P +     K ++ +        C   G P P+  W+K G  +N     +     + G 
Sbjct: 4   EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63

Query: 88  SLIIKHVEF-SDQGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAE 139
            L I+ +    D+  Y C   N VGE       L+VL         P   + P+      
Sbjct: 64  VLRIQPLRTPRDENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVVER 122

Query: 140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCN 198
             T T  C ASG P+PEI W  +  P+  +  N R K   +  + IE+  ++D G Y C 
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182

Query: 199 ATNSLGYVYK---DVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN 255
           ATNS G  Y    ++YV V   AP  +  P     + G  V +TC   G+P P V W+  
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG 242

Query: 256 QKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE 315
            ++LT      +    L++TDV   DS  YTC A + LG  +    +TVK       +  
Sbjct: 243 AEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHH 300

Query: 316 DY 317
            +
Sbjct: 301 HH 302

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  249 bits (638), Expect = 4e-77
 Identities = 76/304 (25%), Positives = 119/304 (39%), Gaps = 24/304 (7%)

Query: 121 SVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           +    P F  EP+          +F C+A+G P+P + W   GK ++             
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61

Query: 181 RIT--IENLR-KSDTGNYGCNATNSLGYVYKDVYVNVLA------HAPEITEAPKDEYTV 231
                I+ LR   D   Y C A NS+G +     + VL         P I   P+ +   
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121

Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKEL----TGGRYTILETGDLKITDVAFADSGEYTC 287
             +T  + C   G P PE+ W  +   +    + GR   L +G L+I      D G+Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181

Query: 288 FARNKLGTAQ-GSGSLTVKEHT---HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
            A N  G       +L V+        +  P  +E+  G +    C AV  P     + W
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSP--MPYVKW 239

Query: 344 LRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLE 403
           ++G+E +   +    +      L +T     DS  YTC A + L  IEA A +TV+   +
Sbjct: 240 MQGAEDL---TPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSLPK 294

Query: 404 APSN 407
           A + 
Sbjct: 295 AGTK 298

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPR--FVQ 360
           T +E      +P+D    +G  A+F C A  DP  K  + W +  + ++ +      F +
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDP--KPRVTWNKKGKKVNSQRFETIEFDE 59

Query: 361 SNDYSLTVTK-SSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNF 408
           S    L +    +  D   Y C AQ  +  I   A LTV    + PS F
Sbjct: 60  SAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF 108

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  278 bits (712), Expect = 3e-88
 Identities = 56/277 (20%), Positives = 107/277 (38%), Gaps = 7/277 (2%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
                +     C   G P     ++  G  I  + R  + +      L I +    D G 
Sbjct: 15  ELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGI 74

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH 161
           Y C+ ++  G+ +  ++ L +     F          + E     C+ S  P P + W++
Sbjct: 75  YRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 134

Query: 162 NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN-SLGYVYKDVYVNVLAHAPE 220
           + + ++    N    +  N + I N+ KSD G Y C     + G +     + ++   P 
Sbjct: 135 HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA 194

Query: 221 IT--EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILE-TGDLKITD 276
           I+  +   +     G+ +  +CR  G+P+P ++W  N K +    +Y +     +L + +
Sbjct: 195 ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRN 254

Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ 313
           +  +D G Y C A NK G  +    L V    H    
Sbjct: 255 IINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHHH 291

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  231 bits (590), Expect = 3e-70
 Identities = 74/291 (25%), Positives = 120/291 (41%), Gaps = 19/291 (6%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-- 180
           +A    T+    +  +  E+  F C A G PE    +   G+ I       R  V     
Sbjct: 2   MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKI---ISTQRVVVQKEGV 58

Query: 181 --RITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
             R+TI N    D G Y C AT++ G      V + +        E    +    G+   
Sbjct: 59  RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVVSPQEFKQGEDAE 117

Query: 238 LTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
           + CRV  +P P V+W+++ +E+T     R+ +L   +L+I ++  +D G Y C  R +  
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 177

Query: 295 TAQGSGSLTVKEHT----HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI 350
                  + V  +      +  +  +   E G+  TF C A   P  + +I W R  + I
Sbjct: 178 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP--EPAISWFRNGKLI 235

Query: 351 DFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           + E+E   ++ ++  LTV      D G Y CRA  +    E QA L V V 
Sbjct: 236 E-ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  277 bits (709), Expect = 3e-86
 Identities = 84/379 (22%), Positives = 145/379 (38%), Gaps = 27/379 (7%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEF----S 97
           +      + + C   G P P   W+++    N +   R+S      +L+I          
Sbjct: 28  IVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEE 87

Query: 98  DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKA-SGLPEP 155
            +G Y C   N  G A S  I L V  +P +  E  + +   E   +T +C    GLP P
Sbjct: 88  YEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSP 147

Query: 156 EIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDT-GNYGCNATNSLGYVYKD---V 210
            I W+ +         + R   G N  +   N+   D   +Y CNA     +  +     
Sbjct: 148 VIFWMSSSMEPI--TQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 205

Query: 211 YVNVLAHAPEITEAPK---------DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG 261
            + VL         P           +  + G  ++L C   G P P++ W     +L  
Sbjct: 206 TLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS 265

Query: 262 GRYTILE-TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVE 320
            +         L+IT+V+  DSGEY C A NK+G+ + + S+ VK   +  D+P++  + 
Sbjct: 266 DKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILA 325

Query: 321 AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT 380
            G+     C A  +P  K ++ W+   EP+         +    ++    +       Y 
Sbjct: 326 PGEDGRLVCRANGNP--KPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQ 383

Query: 381 CRAQTELDFIEAQATLTVQ 399
           C    E  ++ A A ++V 
Sbjct: 384 CNTSNEHGYLLANAFVSVL 402

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  210 bits (535), Expect = 5e-61
 Identities = 69/209 (33%), Positives = 104/209 (49%), Gaps = 3/209 (1%)

Query: 7   SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
              +  N   L V+ T   A +   +      T   ++ LR   + L CI  G P P   
Sbjct: 197 HTIQQKNPFTLKVLTTRGVA-ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIA 255

Query: 67  WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
           W K G  + PSD+    N+ K+L I +V   D G Y C  SN +G    ++I + V AAP
Sbjct: 256 WYKKGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVRVKAAP 313

Query: 127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
           Y+  EP+ +  A  E     C+A+G P+P + W+ NG+P+  APPNP R+V  + I   +
Sbjct: 314 YWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRD 373

Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
            + S    Y CN +N  GY+  + +V+VL
Sbjct: 374 TQISSRAVYQCNTSNEHGYLLANAFVSVL 402

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  209 bits (533), Expect = 9e-61
 Identities = 70/287 (24%), Positives = 103/287 (35%), Gaps = 24/287 (8%)

Query: 39  TRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEF 96
                V      + L C    G P P   W    +     D R+SQG+ G  L   +V  
Sbjct: 122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG-DLYFSNVML 180

Query: 97  SD-QGSYTCEVSNGVGEAKSYS--IDLSVL-------AAPYFTV---EPEFINAAEEETV 143
            D Q  Y+C                 L VL         P F                 +
Sbjct: 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL 240

Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-TIENLRKSDTGNYGCNATNS 202
             EC ASG+P P+I W   G  +   P +  +    N+   I N+ + D+G Y C A+N 
Sbjct: 241 LLECIASGVPTPDIAWYKKGGDL---PSDKAKFENFNKALRITNVSEEDSGEYFCLASNK 297

Query: 203 LGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-- 260
           +G +   + V V A AP   + PK+     G+   L CR  G PKP V W+ N + L   
Sbjct: 298 MGSIRHTISVRVKA-APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSA 356

Query: 261 -GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                  +    +   D   +    Y C   N+ G    +  ++V +
Sbjct: 357 PPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  201 bits (512), Expect = 8e-58
 Identities = 69/325 (21%), Positives = 113/325 (34%), Gaps = 33/325 (10%)

Query: 116 YSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR 174
            SI   +   P  T +  +       + +  EC+A G P P  HW  N +  + A  +PR
Sbjct: 7   PSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIA-KDPR 65

Query: 175 RKVGPN------RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDE 228
             +                 +   G Y C A N  G    +     ++ +P   +   D 
Sbjct: 66  VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDP 125

Query: 229 YTVD-GKTVVLTCRVF-GAPKPEVNWIHNQKEL--TGGRYTILETGDLKITDVAFADS-G 283
             V  G  + L C    G P P + W+ +  E      R +    GDL  ++V   D   
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQT 185

Query: 284 EYTCFARNKLGTAQGSG---SLTVKEHTHITDQ----------PEDYEVEAGQSATFRCN 330
           +Y+C AR             +L V     + ++               V  G      C 
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245

Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
           A   P     I W +    +   S+    ++ + +L +T  SE DSG+Y C A  ++  I
Sbjct: 246 ASGVP--TPDIAWYKKGGDL--PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI 301

Query: 391 EAQATLTVQVP---LEAPSNFTLIQ 412
               ++ V+     L+ P N  L  
Sbjct: 302 RHTISVRVKAAPYWLDEPKNLILAP 326

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  281 bits (719), Expect = 3e-86
 Identities = 72/464 (15%), Positives = 144/464 (31%), Gaps = 38/464 (8%)

Query: 23  GISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI-S 81
            +  +    +    Y     EV + +  + L  +         +W      +N       
Sbjct: 39  DLGCALRPQSSGTVYEAAAVEVDV-SASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL 97

Query: 82  QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
           Q     S++I  +  +  G Y   + +      +    +S+     +T+   +    E +
Sbjct: 98  QNRGVVSMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTLRRPYFRKMENQ 156

Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
                C +  +PEP + WV                V   +   + L +    +  C A N
Sbjct: 157 D-ALVCISESVPEPIVEWVLCDSQGESCKEESPAVV---KKEEKVLHELFGTDIRCCARN 212

Query: 202 SLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKELT 260
            LG     ++   L   P+ T      +   G+ + + C+         + W    K L 
Sbjct: 213 ELGRECTRLFTIDLNQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALE 270

Query: 261 ----------GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI 310
                         T++      ++ VA  D+G YTC +         S  +T+ E   I
Sbjct: 271 EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFI 327

Query: 311 --TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
             T+  EDYE++  +   F     + P  ++   W    +    E +      N YS++ 
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYP--QIRCTWTFSRKSFPCEQK---GLDNGYSISK 382

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVP---LEAPSNFTLI-QVIDAKKAVVSWN 424
             + +   G+Y   A+ +        TL ++     L   S                +W 
Sbjct: 383 FCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWK 442

Query: 425 PVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVD 468
             S +S        +  T    + + + +        ST    +
Sbjct: 443 KCSDKSP----NCTEEITEGVWNRKANRKVFGQWVSSSTLNMSE 482

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  236 bits (602), Expect = 2e-69
 Identities = 55/386 (14%), Positives = 106/386 (27%), Gaps = 38/386 (9%)

Query: 38  VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFS 97
             R+        +  L CI    P P   W             S     K   + H    
Sbjct: 144 TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE--L 201

Query: 98  DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PEPE 156
                 C   N +G   +    + +   P  T+   F+     E +   CKA  +     
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFL--KVGEPLWIRCKAVHVNHGFG 259

Query: 157 IHWVHNGKPISQAPPNPRRKVGPNRI-------TIENLRKSDTGNYGCNATNSLGYVYKD 209
           + W    K + +           NR         + ++ ++DTG Y C+++       + 
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QS 316

Query: 210 VYVNVLAHA-PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE 268
             V ++       T + +D      +    + R    P+    W  ++K     +  +  
Sbjct: 317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN 376

Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFR 328
              +          GEY   A N         +L ++    +        +    ++   
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV--------LAEASASQAS 428

Query: 329 CNAVSDPSLKLSIVWLRGSEP------------IDFESEPRFVQSNDYSLTVTKSSELDS 376
           C +   P    S  W + S+              + ++  +       S T+  S  +  
Sbjct: 429 CFSDGYP--LPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKG 486

Query: 377 GQYTCRAQTELDFIEAQATLTVQVPL 402
               C A   L        L    P 
Sbjct: 487 FLVKCCAYNSLGTSCETILLNSPGPF 512

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  192 bits (488), Expect = 2e-53
 Identities = 45/328 (13%), Positives = 82/328 (25%), Gaps = 42/328 (12%)

Query: 18  NVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINP 76
           N +    +        +    T  +      + + + C            W  +   +  
Sbjct: 212 NELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271

Query: 77  SDRISQGNYGK--------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYF 128
            +      Y             +  V  +D G YTC  S    +    S  ++++   + 
Sbjct: 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFI 327

Query: 129 --TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
             T   E     + E   F  +    P+    W  + K     P   +       I+   
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF---PCEQKGLDNGYSISKFC 384

Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAP 246
             K   G Y  +A N      K   +N+    P++                 +C   G P
Sbjct: 385 NHKHQPGEYIFHAENDDAQFTKMFTLNIRR-KPQVLAE--------ASASQASCFSDGYP 435

Query: 247 KPEVNW-------IHNQKELTGGRYTILE--------TGDLKITDVAFADSGEYTCFARN 291
            P   W        +  +E+T G +                 +            C A N
Sbjct: 436 LPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYN 495

Query: 292 KLGTAQGSGSLTVKEHTHITDQPEDYEV 319
            LGT+  +  L                 
Sbjct: 496 SLGTSCETILLNSPGPFPFIQDGGTKHH 523

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  183 bits (466), Expect = 3e-50
 Identities = 40/333 (12%), Positives = 92/333 (27%), Gaps = 21/333 (6%)

Query: 91  IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS 150
                     SY     +     +     L   ++     E   +      ++T +    
Sbjct: 19  NNDSSVGKSSSYPMVSES----PEDLGCALRPQSSG-TVYEAAAVEVDVSASITLQVLVD 73

Query: 151 GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV 210
                   WV     ++  P    +  G   + I  + ++  G Y     +         
Sbjct: 74  APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133

Query: 211 YVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG 270
            V++      +    +  +        L C     P+P V W+    +    +       
Sbjct: 134 TVSI--RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVV 191

Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
             +   +      +  C ARN+LG    +   T+  +           ++ G+    RC 
Sbjct: 192 KKEEKVLHELFGTDIRCCARNELGREC-TRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCK 250

Query: 331 AVSDPSLKLSIVWLRGSEPID-------FESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
           A    +    + W   ++ ++                       V+  +  D+G YTC +
Sbjct: 251 A-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSS 309

Query: 384 QTELDFIEAQATLTVQVP--LEAPSNFTLIQVI 414
                     A +T+     + A ++    ++ 
Sbjct: 310 SKH---PSQSALVTIVEKGFINATNSSEDYEID 339

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 81.7 bits (201), Expect = 2e-16
 Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 262 GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEA 321
                +   + K  D +   S  Y   + +     +  G     + +    +    EV+ 
Sbjct: 8   PVIKCVLI-NHKNNDSSVGKSSSYPMVSES----PEDLGCALRPQSSGTVYEAAAVEVDV 62

Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTC 381
             S T +    +     +S +W+     ++ +           S+ + K +E  +G+Y  
Sbjct: 63  SASITLQVLVDAPG--NISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120

Query: 382 RAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVV 421
             Q+E        T++++  L         + ++ + A+V
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALV 160

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  271 bits (696), Expect = 8e-86
 Identities = 63/284 (22%), Positives = 118/284 (41%), Gaps = 10/284 (3%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-R 181
           +A P+F ++P  ++ A  E+ TF+C  +G    +I W  + + I          V     
Sbjct: 3   MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTC 240
           +T+  + K D G Y C A+N  G       + V    P   +  +    V   +     C
Sbjct: 63  LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYEC 121

Query: 241 RVFGAPKPEVNWIHNQKELT-GGRYTIL---ETGDLKITDVAFADSGEYTCFARNKLGTA 296
           ++ G+P+ +V W  ++ E+    ++ +        L++ +++  DSG+YTC A N  G+A
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181

Query: 297 QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
             S SL VKE      +P   E   G      C     P     + W +    +    + 
Sbjct: 182 SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP--PFQVSWHKDKRELRSGKKY 239

Query: 357 RFVQSND-YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           + +  N   S+ +      D G+Y C+A  ++       ++T++
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  265 bits (679), Expect = 2e-83
 Identities = 76/270 (28%), Positives = 115/270 (42%), Gaps = 10/270 (3%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
                +     C   GT   +  W+KD   I P     ++      +L +  V   D G 
Sbjct: 16  DLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 75

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF-INAAEEETVTFECKASGLPEPEIHWV 160
           YTC  SN  G+  S S  L V   P F  + E      ++E   +ECK  G PE ++ W 
Sbjct: 76  YTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY 134

Query: 161 HNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP 219
            +   I ++       V     + + NL   D+G+Y C A N+ G       + V    P
Sbjct: 135 KDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PP 193

Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKIT 275
              + P    T+ G  V L C + G P  +V+W  +++EL  G +Y I+       + I 
Sbjct: 194 VFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHIL 253

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           +V  AD GEY C A N +G+    GS+T+K
Sbjct: 254 NVDSADIGEYQCKASNDVGSYTCVGSITLK 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  166 bits (421), Expect = 2e-46
 Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 11/201 (5%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
            P     P       G++    C V G    ++ W  + +E+  GG Y +    +   L 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPED-YEVEAGQSATFRCNAV 332
           +  V   D+G+YTC+A N  G    S  L V+E      + E    V+  +   + C   
Sbjct: 65  VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 124

Query: 333 SDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
             P  ++ ++W +    I   S+ R     +   L +   S  DSG YTC A        
Sbjct: 125 GSP--EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182

Query: 392 AQATLTVQVP---LEAPSNFT 409
           +  +L V+ P    + P    
Sbjct: 183 SSTSLKVKEPPVFRKKPHPVE 203

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  162 bits (411), Expect = 5e-45
 Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 10/183 (5%)

Query: 40  RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFS 97
               +  +++     C  GG+P  + +W KD   I  S +  +S       L + ++   
Sbjct: 106 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 165

Query: 98  DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
           D G YTCE  N  G A S S  L V   P F  +P  +   +   V  EC+  G P  ++
Sbjct: 166 DSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQV 224

Query: 158 HWVHNGKPISQAPPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
            W  + + +       + K+        I I N+  +D G Y C A+N +G       + 
Sbjct: 225 SWHKDKREL---RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281

Query: 214 VLA 216
           + A
Sbjct: 282 LKA 284

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  269 bits (689), Expect = 1e-83
 Identities = 95/368 (25%), Positives = 132/368 (35%), Gaps = 24/368 (6%)

Query: 48  NKKVELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEFSDQGSYTCE 105
            +KV L C     P     W  +G  +      R      G  +I   V+  D GSY C 
Sbjct: 22  EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-GDLVISNPVKAKDAGSYQCV 80

Query: 106 VSNGVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKA-SGLPEPEIHWVHNG 163
            +N  G   S    L       F+ E  + +   E   V F C      P     W+ N 
Sbjct: 81  ATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNE 140

Query: 164 KPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVYV---------- 212
            P        R        + I     SD GNY C AT+ + ++ K V+           
Sbjct: 141 FPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200

Query: 213 -NVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD 271
                      + P D Y + G+ V L C  FG P P++ W       T     +     
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW--LSSEPL 258

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNA 331
           L I +V F D G Y C A N  G     G + +       D   D E + G    + C A
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVA 318

Query: 332 VSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
              P  + ++ WLR  +P+   S+ R   S    L  +K    DSG Y C A+ +   + 
Sbjct: 319 SGKP--RPAVRWLRDGQPL--ASQNRIEVSGG-ELRFSKLVLEDSGMYQCVAENKHGTVY 373

Query: 392 AQATLTVQ 399
           A A LTVQ
Sbjct: 374 ASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  207 bits (528), Expect = 2e-60
 Identities = 68/282 (24%), Positives = 98/282 (34%), Gaps = 22/282 (7%)

Query: 39  TRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINP---SDRISQGNYGKSLIIKHV 94
            R          V   C      P     W  +  P        R      G +L I   
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG-NLYIAKT 165

Query: 95  EFSDQGSYTCEVSNGVGEA----KSYSIDLSVL-------AAPYFTVEPEFINAAEEETV 143
           E SD G+Y+C  ++ +        S    LS+        A       P    A   + V
Sbjct: 166 EASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMV 225

Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL 203
           T EC A G P P+I W              +       + I+N+   D G Y C A N  
Sbjct: 226 TLECFAFGNPVPQIKWRKLD-----GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIK 280

Query: 204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGR 263
           G       + + A  P+  +   D     G  +  +C   G P+P V W+ + + L    
Sbjct: 281 GRDTYQGRIIIHA-QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN 339

Query: 264 YTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
              +  G+L+ + +   DSG Y C A NK GT   S  LTV+
Sbjct: 340 RIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  205 bits (523), Expect = 1e-59
 Identities = 68/312 (21%), Positives = 109/312 (34%), Gaps = 35/312 (11%)

Query: 125 APYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
            P F  +P    F   + EE VT  C+A   P     W  NG  +    P+ R ++    
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMG-PDSRYRLVAGD 62

Query: 182 ITIEN-LRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVD-GKTVVL 238
           + I N ++  D G+Y C ATN+ G V  ++  +       E +   +D   +  G  V+ 
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASLRF-GFLQEFSAEERDPVKITEGWGVMF 121

Query: 239 TCRV-FGAPKPEVNWIHNQKEL----TGGRYTILETGDLKITDVAFADSGEYTCFARNKL 293
           TC      P     W+ N+        G R+    TG+L I     +D G Y+CFA + +
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHI 181

Query: 294 GTAQGSGSLTVKEHTHITD------------QPEDYEVEAGQSATFRCNAVSDPSLKLSI 341
                S      + +   +             P D     GQ  T  C A  +P     I
Sbjct: 182 DFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNP--VPQI 239

Query: 342 VWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            W +               S++  L +      D G Y C A+        Q  + +   
Sbjct: 240 KWRKLDGSQ-----TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ 294

Query: 402 ---LEAPSNFTL 410
              L+  ++   
Sbjct: 295 PDWLDVITDTEA 306

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  198 bits (506), Expect = 3e-57
 Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 9/207 (4%)

Query: 11  IGNRILLNVIATGISASQNR-HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK 69
           I   +        ++A   R +AP  +        AL  + V L C   G P+PQ  W K
Sbjct: 184 ITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK 243

Query: 70  DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT 129
                         +    L I++V+F D+G+Y CE  N  G   +Y   + + A P + 
Sbjct: 244 LDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIKGRD-TYQGRIIIHAQPDWL 298

Query: 130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
                  A     + + C ASG P P + W+ +G+P+       R +V    +    L  
Sbjct: 299 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL---ASQNRIEVSGGELRFSKLVL 355

Query: 190 SDTGNYGCNATNSLGYVYKDVYVNVLA 216
            D+G Y C A N  G VY    + V A
Sbjct: 356 EDSGMYQCVAENKHGTVYASAELTVQA 382

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  266 bits (682), Expect = 1e-82
 Identities = 88/372 (23%), Positives = 130/372 (34%), Gaps = 24/372 (6%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGS 101
           +    KKV+L C   G P P   W  +G  ++     R S  + G  LI    +  D G+
Sbjct: 19  LDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD-GSLLINNPNKTQDAGT 77

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP-EFINAAEEETVTFECKA-SGLPEPEIHW 159
           Y C  +N  G   S    L       F       ++    + +   C       E    W
Sbjct: 78  YQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAW 137

Query: 160 VHNGKPISQAPPNPRRKVGPNRI-TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA 218
           + N  P      N R          I  + KSD GNY C  TN++           L   
Sbjct: 138 IFNEYPSY--QDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILR 195

Query: 219 PE----------ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTIL 267
            +            + P+      G TV L C   G P P + W   + K +        
Sbjct: 196 NDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK 255

Query: 268 ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATF 327
             G L+I +    D+G Y C A N  G     G LT     +      D  V   +S  +
Sbjct: 256 SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFW 315

Query: 328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL 387
            C A   P  K +  WL+  +P+   +  R       +L +T  +  D+G Y C A+ + 
Sbjct: 316 ECKANGRP--KPTYRWLKNGDPL--LTRDRIQIEQG-TLNITIVNLSDAGMYQCVAENKH 370

Query: 388 DFIEAQATLTVQ 399
             I + A L+V 
Sbjct: 371 GVIFSSAELSVI 382

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  218 bits (556), Expect = 2e-64
 Identities = 80/278 (28%), Positives = 108/278 (38%), Gaps = 16/278 (5%)

Query: 39  TRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFS 97
           TR      R + + L C     +      W  +  P    +R        +L I  VE S
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKS 167

Query: 98  DQGSYTCEVSNGVGEAKSYSIDLSVL----------AAPYFTVEPEFINAAEEETVTFEC 147
           D G+YTC V+N V   K       ++                  PE + A +  TV  EC
Sbjct: 168 DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC 227

Query: 148 KASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV 206
            A G P P I W   +GKPI       RR      + I N ++ D G+Y C A NS G  
Sbjct: 228 FALGNPVPTILWRRADGKPI---ARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN 284

Query: 207 YKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTI 266
                +   A  P   +   D +    ++V   C+  G PKP   W+ N   L       
Sbjct: 285 VAKGQLTFYA-QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQ 343

Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
           +E G L IT V  +D+G Y C A NK G    S  L+V
Sbjct: 344 IEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  212 bits (541), Expect = 3e-62
 Identities = 74/311 (23%), Positives = 123/311 (39%), Gaps = 31/311 (9%)

Query: 124 AAPYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           + P F  EP    F   +EE+ V   C+  G P+P I W  NG  +     + R  V   
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG-MDFRYSVVDG 62

Query: 181 RITIENL-RKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVD-GKTVV 237
            + I N  +  D G Y C ATNS G +  ++  +   A+        +   +V  G+ +V
Sbjct: 63  SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQF-AYLENFKTRTRSTVSVRRGQGMV 121

Query: 238 LTCRV-FGAPKPEVNWIHNQKELT--GGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
           L C     + +    WI N+        R+   ETG+L I  V  +D G YTC   N + 
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVT 181

Query: 295 TAQGSGS---LTVKEHTHITDQ--------PEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
             +  G    L ++    + +         PE    E G +    C A+ +P    +I+W
Sbjct: 182 NHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP--VPTILW 239

Query: 344 LR-GSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP- 401
            R   +PI  +        ++  L +    + D+G Y C A+       A+  LT     
Sbjct: 240 RRADGKPIARK---ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP 296

Query: 402 --LEAPSNFTL 410
             ++  ++  +
Sbjct: 297 NWVQIINDIHV 307

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  201 bits (512), Expect = 5e-58
 Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 10/211 (4%)

Query: 7   SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
           +   +G    L +   G+      + PK +    +   A +   V+L C   G P+P  +
Sbjct: 182 NHKVLGPPTPLILRNDGVMGE---YEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTIL 238

Query: 67  WSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           W + DG PI    R  + N    L I + +  D GSY C   N  G+  +    L+  A 
Sbjct: 239 WRRADGKPIARKARRHKSN--GILEIPNFQQEDAGSYECVAENSRGKNVA-KGQLTFYAQ 295

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           P +      I+ A EE+V +ECKA+G P+P   W+ NG P+       R ++    + I 
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL---LTRDRIQIEQGTLNIT 352

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
            +  SD G Y C A N  G ++    ++V+A
Sbjct: 353 IVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  256 bits (656), Expect = 1e-78
 Identities = 83/386 (21%), Positives = 120/386 (31%), Gaps = 39/386 (10%)

Query: 44  VALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSD---RISQGNYGKSLIIKHVEFSDQ 99
           +   N    L CI  G        W KDG   N  +    + +     SL+    + SD+
Sbjct: 17  LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG--SLVFLRPQASDE 74

Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK-ASGLPEPEIH 158
           G Y C      G A S  I            +       E      +C   +  P+P I 
Sbjct: 75  GHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLIT 134

Query: 159 WVHNGKPISQ----APPNPRRKVGPN-RITIENLRK---SDTGNYGCNATNSLGYVYKDV 210
           W                + R   GP+  +    + K   SD   Y C A N+       +
Sbjct: 135 WKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 194

Query: 211 YVNVL----------AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT 260
               +             P      KD     G   ++ C     P    N+  N K++ 
Sbjct: 195 VEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVN 254

Query: 261 G------GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKEHTHITDQ 313
           G       R+       L        D G YTC   N +G  Q  S  LTV        +
Sbjct: 255 GNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQK 314

Query: 314 PED-YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
           PE    V+ GQ  T  C     P    ++VW   ++P+   S  R   ++   L +    
Sbjct: 315 PEKVIVVKQGQDVTIPCKVTGLP--APNVVWSHNAKPL---SGGRATVTDS-GLVIKGVK 368

Query: 373 ELDSGQYTCRAQTELDFIEAQATLTV 398
             D G Y CRA  E      +  + V
Sbjct: 369 NGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  207 bits (527), Expect = 4e-60
 Identities = 56/310 (18%), Positives = 93/310 (30%), Gaps = 30/310 (9%)

Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVG 178
           L V   P    +P  +   E      EC   G  +  +  W  +GK  +    N   +  
Sbjct: 1   LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60

Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
              +     + SD G+Y C A    G     V      +         ++  ++G+   L
Sbjct: 61  EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120

Query: 239 TCRV-FGAPKPEVNWIHNQKELT--------GGRYTILETGDLKITDVAFADS---GEYT 286
            C +    PKP + W                  R T    G+L  T V   D     +Y 
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV 180

Query: 287 CFARNKLGTAQ-----------GSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP 335
           C A+N     +              +   K         +D   +AG      C   S+P
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 240

Query: 336 SLKLSIVWLRGSEPIDFESEPRF---VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA 392
                  + +  + ++   E R     +++   L    +   D G YTC     +   + 
Sbjct: 241 --MGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298

Query: 393 Q-ATLTVQVP 401
               LTV   
Sbjct: 299 HSLKLTVVSA 308

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  199 bits (507), Expect = 3e-57
 Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 10/203 (4%)

Query: 17  LNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPI-- 74
             +       S  +  P  QYV+ K  +A       ++C++G  P+    + K+G  +  
Sbjct: 197 YEIKGVTKDNSGYKGEPVPQYVS-KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNG 255

Query: 75  NPSDRISQGNY--GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
           NP DRI++ N   GK L+ K     D+G YTCEV NGVG+ + +S+ L+V++AP +  +P
Sbjct: 256 NPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKP 315

Query: 133 E-FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSD 191
           E  I   + + VT  CK +GLP P + W HN KP+       R  V  + + I+ ++  D
Sbjct: 316 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL----SGGRATVTDSGLVIKGVKNGD 371

Query: 192 TGNYGCNATNSLGYVYKDVYVNV 214
            G YGC ATN  G  Y +  V V
Sbjct: 372 KGYYGCRATNEHGDKYFETLVQV 394

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  253 bits (647), Expect = 4e-78
 Identities = 79/324 (24%), Positives = 129/324 (39%), Gaps = 50/324 (15%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSL 89
             P  +   +++ V      VEL C   GG P+  T+W KDG  + PS+R+  G   + L
Sbjct: 6   EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP--QRL 63

Query: 90  IIKHVEFSDQGSYTCEVSNGVGEAKSYSI--------------------DLSVLAAPYFT 129
            + +    D G+Y+C           +S+                          APY+T
Sbjct: 64  QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123

Query: 130 ----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--IT 183
               ++ + +      TV F C A+G P P I W+ NG+           K+   +  + 
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV 183

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE----ITEAPKDEYTVDGKTVVLT 239
           +E++  SD GNY C   N  G + +   ++VL  +P         P ++  V G  V   
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 243

Query: 240 CRVFGAPKPEVNWIHNQK-----------------ELTGGRYTILETGDLKITDVAFADS 282
           C+V+   +P + W+ + +                 +  G   T  E   L + +V F D+
Sbjct: 244 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDA 303

Query: 283 GEYTCFARNKLGTAQGSGSLTVKE 306
           GEYTC A N +G +  S  L V  
Sbjct: 304 GEYTCLAGNSIGFSHHSAWLVVLP 327

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  209 bits (534), Expect = 8e-62
 Identities = 69/325 (21%), Positives = 105/325 (32%), Gaps = 54/325 (16%)

Query: 126 PYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI 184
                + E +     + V   C    G P     WV +G  +    P+ R  VGP R+ +
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL---VPSERVLVGPQRLQV 65

Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA--------------------HAPEITEA 224
            N    D+G Y C    +   +         A                     AP  T  
Sbjct: 66  LNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRP 125

Query: 225 PKDEYTV----DGKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTILETGDLKIT 275
            + +  +       TV   C   G P P ++W+ N +E       GG     +   L + 
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVME 185

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCN 330
            V  +D G YTC   NK G+ + + +L V E +          P +     G    F C 
Sbjct: 186 SVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK 245

Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEP--------------RFVQSNDYSLTVTKSSELDS 376
             SD   +  I WL+  E    +  P                       L++   +  D+
Sbjct: 246 VYSDA--QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDA 303

Query: 377 GQYTCRAQTELDFIEAQATLTVQVP 401
           G+YTC A   + F    A L V   
Sbjct: 304 GEYTCLAGNSIGFSHHSAWLVVLPA 328

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  146 bits (369), Expect = 7e-39
 Identities = 51/212 (24%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 34  KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY---GKSLI 90
           + + + +K         V   C   G P P   W K+G       RI          SL+
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV 183

Query: 91  IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA-----PYFTVEPEFINAAEEETVTF 145
           ++ V  SD+G+YTC V N  G  +  +  L VL             P    A     V F
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQ-TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF 242

Query: 146 ECKASGLPEPEIHWVHNGKPI-SQAPPNPRRKV-------------GPNRITIENLRKSD 191
            CK     +P I W+ + +   S+  P+    V                 +++ N+   D
Sbjct: 243 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFED 302

Query: 192 TGNYGCNATNSLGYVYKDVYVNVLAHAPEITE 223
            G Y C A NS+G+ +   ++ VL    E+ E
Sbjct: 303 AGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  133 bits (336), Expect = 2e-34
 Identities = 41/215 (19%), Positives = 65/215 (30%), Gaps = 31/215 (14%)

Query: 216 AHAPEITEAPKDEYTVD-GKTVVLTCRVF-GAPKPEVNWIHNQKELTGGRYTILETGDLK 273
           A  P      +++     G  V L+C    G P     W+ +   L      ++    L+
Sbjct: 5   AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQ 64

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITD--------------------- 312
           + + +  DSG Y+C  R                 +   D                     
Sbjct: 65  VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124

Query: 313 ----QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES--EPRFVQSNDYSL 366
                 +   V A  +  FRC A  +P    SI WL+       E       ++   +SL
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNP--TPSISWLKNGREFRGEHRIGGIKLRHQQWSL 182

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            +      D G YTC  + +   I    TL V   
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER 217

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 4/97 (4%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
              Q E     +G +    C            VW++    +      R +      L V 
Sbjct: 11  EPGQQEQLVFGSGDAVELSCPPPGGGP-MGPTVWVKDGTGL--VPSERVLVGP-QRLQVL 66

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
            +S  DSG Y+CR +     +   +      P     
Sbjct: 67  NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDD 103

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  254 bits (650), Expect = 9e-78
 Identities = 91/403 (22%), Positives = 147/403 (36%), Gaps = 30/403 (7%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--------GGRYTILE-- 268
           P I +  K+E T +   V L C   G P PE+ W       T         GR  +    
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 269 -TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATF 327
            +  L I DV  +DSG Y C A +++G  Q S  L ++           Y    G     
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINI 120

Query: 328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSLTVTKSSELDSGQYTCRAQ 384
            C+  S+P    SI W R    +  ++       +      L +  +S+ D G+Y C A 
Sbjct: 121 SCDVKSNPP--ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178

Query: 385 TELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH-FRGYKVQTW 443
             +     +  L +     +P    +I++     A VS+N   P S  G     Y+V   
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIEL-SQTTAKVSFNK--PDSHGGVPIHHYQVDV- 234

Query: 444 TEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGV 503
             K+    I +++ + G  T   ++   P +    RV A NG   G  S+I  F T    
Sbjct: 235 --KEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVR 292

Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
             +  S+   P    +F L   K +     ++ Y +KY            + L       
Sbjct: 293 EPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKY-----RSKDKEDQWLEKKVQGN 347

Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPD 606
                L  L+ +  Y + +    + G    + Y F +P K P+
Sbjct: 348 KDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK-PN 389

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  145 bits (367), Expect = 5e-38
 Identities = 63/315 (20%), Positives = 105/315 (33%), Gaps = 33/315 (10%)

Query: 38  VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPINPSDRISQGNY-------GKS 88
           +  K E    N +V L C   G P+P+  W +  DG      D+   G           S
Sbjct: 5   IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64

Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
           L IK V+ SD G Y CE ++ +G  +  S+ L +  AP F        + E   +   C 
Sbjct: 65  LHIKDVKLSDSGRYDCEAASRIGGHQK-SMYLDIEYAPKFISNQTIYYSWEGNPINISCD 123

Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR---ITIENLRKSDTGNYGCNATNSLGY 205
               P   IHW  +   +        +     R   + I     +D G Y C ATN +G 
Sbjct: 124 VKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183

Query: 206 VYKDVYVNVLA-----HAPEITEAPKDEYTV-------DGKTVVLTCRVFGAPKPEVNWI 253
            +++  + +       +  +I E  +    V        G   +   +V         W 
Sbjct: 184 RFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW- 242

Query: 254 HNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ 313
             +   + G  T++   +L+        + E    A N  G    S     +        
Sbjct: 243 --KIVRSHGVQTMVVLNNLEP-----NTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPS 295

Query: 314 PEDYEVEAGQSATFR 328
           P     +     +F+
Sbjct: 296 PPSIHGQPSSGKSFK 310

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  142 bits (360), Expect = 4e-37
 Identities = 67/387 (17%), Positives = 129/387 (33%), Gaps = 45/387 (11%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES-----EPRFVQSNDY--- 364
           Q ++         T  C+A  +P     I W R  +   F       + R      +   
Sbjct: 6   QLKNETTYENGQVTLVCDAEGEP--IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63

Query: 365 SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWN 424
           SL +      DSG+Y C A + +   +    L ++   +  SN T+    +         
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN---- 119

Query: 425 PVSPQSLRGHFRGYKVQT--WTEKDGE-----GSIRELIVNKGESTTTEVDKFVPASKNF 477
                 +    +     +  W  +D        +      + G     E+          
Sbjct: 120 ------ISCDVKSNPPASIHWR-RDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGR 172

Query: 478 ARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMG 536
               A N             +    VP +   ++ I L  +   + + KP+   GV +  
Sbjct: 173 YNCTATNHIGT---RFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHH 229

Query: 537 YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKY 596
           Y++  + V               S    T   L  LEP+T Y I +A     G G  SK 
Sbjct: 230 YQVDVKEVASE------IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKI 283

Query: 597 LFYV--PFK--NPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQ 652
             +   P +  +P ++ G+ S+  +  +S T   + +  AP  +Y + +R  +  + W +
Sbjct: 284 EIFQTLPVREPSPPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLE 341

Query: 653 DDVLDWRQSELVLANQPTFQPYEIKVV 679
             V    +  ++L +      YE+++ 
Sbjct: 342 KKV-QGNKDHIILEHLQWTMGYEVQIT 367

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  245 bits (628), Expect = 6e-76
 Identities = 58/285 (20%), Positives = 100/285 (35%), Gaps = 17/285 (5%)

Query: 38  VTRKKEVALRNKKVELFCIFGGTPLPQTI-WSK-DGVPINPSDR----ISQGNYGKSLII 91
           +   +      +     C   G    + I W   +G  ++P+ +    +   +   +L I
Sbjct: 7   IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTI 66

Query: 92  KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG 151
            +    D G Y C V+   G     ++++ +     F   P      E E     C    
Sbjct: 67  YNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVS 126

Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG--YVYKD 209
              P I W H G+ +          +  N + I  ++K+D G Y C           +KD
Sbjct: 127 SLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186

Query: 210 VYVNVLAHAPEITEAPK--DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG----- 262
           + V V    P +       +     G++V L C   G P+P ++W  + + +        
Sbjct: 187 IQVIVNV-PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDE 245

Query: 263 -RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                 ++ +L I +V   D  EY C A NK G    S  L V  
Sbjct: 246 KHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  215 bits (550), Expect = 1e-64
 Identities = 65/293 (22%), Positives = 106/293 (36%), Gaps = 23/293 (7%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASG-LPEPEIHWVH-NGKPISQAPPNPRRKVGPN--- 180
               + P     +  E+  F C+ +G   + +I W   NG+ +S  P   R  V  N   
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS--PNQQRISVVWNDDD 60

Query: 181 --RITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
              +TI N    D G Y C  T   G      V V +         AP  +   +G+  V
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAV 119

Query: 238 LTCRVFGAPKPEVNWIHNQKEL---TGGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
           + C V  +  P + W H  +++      R+ +L    L+I  +   D G Y C  R    
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 295 TAQGSGSLTVKEHT----HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI 350
                  + V  +            +     GQS T  C+A   P  + ++ W +  EPI
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP--EPTMSWTKDGEPI 237

Query: 351 ---DFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
              + + E      +   LT+    + D  +Y C A+ +    +A   L V  
Sbjct: 238 ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  145 bits (366), Expect = 8e-39
 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 13/194 (6%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVNWIHNQKEL---TGGRYTIL----ETG 270
            ++   P       G++    C+V G  K  +++W     E       R +++    ++ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQ-GSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
            L I +    D+G Y C    + GT    + ++ + +     + P   E + G+ A   C
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122

Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL-- 387
           + VS      +I+W      +  + + RF+  ++  L +    + D G Y C  +     
Sbjct: 123 DVVSSL--PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180

Query: 388 DFIEAQATLTVQVP 401
           +       + V VP
Sbjct: 181 EINFKDIQVIVNVP 194

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  259 bits (662), Expect = 1e-75
 Identities = 79/429 (18%), Positives = 149/429 (34%), Gaps = 75/429 (17%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
           A   ++V +   + G P P+  W K+G+P+  +  I  G+    L I  V   D G+YT 
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH---VLTIMEVSERDTGNYTV 398

Query: 105 EVSNGVGEA-KSYSIDLSVLAAPYFTVEPEF---INAAEEETVTFECKASGLPEPE-IHW 159
            ++N + +  +S+ + L V   P    +       +     T T  C    +P P  IHW
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW 458

Query: 160 VHNGKPISQAPPNPRRKVGPNR----------------------------------ITIE 185
               +      P+    V                                       T+ 
Sbjct: 459 YWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLV 518

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA 245
               + +  Y C A N +G   + +  +V    PEIT  P D    + ++V L C    +
Sbjct: 519 IQAANVSALYKCEAVNKVGRGERVISFHVTR-GPEITLQP-DMQPTEQESVSLWCTADRS 576

Query: 246 PKPEVNWIHNQKEL------------------------TGGRYTILETGDLKITDVAFAD 281
               + W     +                         T    +  +   +++ + +  D
Sbjct: 577 TFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQD 636

Query: 282 SGEYTCFARNKLGTAQGSGSLTVKEHTH----ITDQPEDYEVEAGQSATFRCNAVSDPSL 337
            G+Y C A+++    +      +         IT   E+     G+S    C A  +P  
Sbjct: 637 QGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNP-- 694

Query: 338 KLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLT 397
              I+W + +E +  E     ++  + +LT+ +  + D G YTC+A + L   + +A   
Sbjct: 695 PPQIMWFKDNETLV-EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753

Query: 398 VQVPLEAPS 406
           ++   E  +
Sbjct: 754 IEGAQEKTN 762

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  223 bits (569), Expect = 9e-63
 Identities = 67/388 (17%), Positives = 122/388 (31%), Gaps = 39/388 (10%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQG 100
               N  +++ C   G      +W  +         +++   G + K+L I  V  +D G
Sbjct: 42  TIKANTTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTG 99

Query: 101 SYTCEVSNGVGEAKSYSIDLSVLAAPY-----FTVEPEFINAAEEETVTFECKASGLPEP 155
           +Y C        +  Y + +    +P+           +I   + +TV   C  S     
Sbjct: 100 AYKCFYRETDLASVIY-VYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLN 158

Query: 156 EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
                   +       N          TI +   S  G   C A  +       +Y+ V+
Sbjct: 159 VSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218

Query: 216 AH--APEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNW--------------IHNQKE 258
                 ++  +P     +  G+ +VL C         +++              ++   +
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278

Query: 259 LTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT---DQPE 315
              G         L I  V  +D G YTC A + L T + S  + V E   +        
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338

Query: 316 DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
             E   G+        +  P     I W +   P++            + LT+ + SE D
Sbjct: 339 LVEATVGERVRIPAKYLGYP--PPEIKWYKNGIPLE----SNHTIKAGHVLTIMEVSERD 392

Query: 376 SGQYTCRAQTEL--DFIEAQATLTVQVP 401
           +G YT      +  +      +L V VP
Sbjct: 393 TGNYTVILTNPISKEKQSHVVSLVVYVP 420

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  220 bits (561), Expect = 1e-61
 Identities = 70/416 (16%), Positives = 122/416 (29%), Gaps = 62/416 (14%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWS--KDGVPINPSDRISQGNYGKSLIIKHVEFSDQGS 101
              +NK V + C+   + L  ++ +   +   +   +RIS  +  K   I     S  G 
Sbjct: 139 TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS-KKGFTIPSYMISYAGM 197

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAA----PYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
             CE        +S  + + V+               I  +  E +   C A       I
Sbjct: 198 VFCEAKINDESYQS-IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 256

Query: 158 --HWVHNGKPISQAPPNPRRKVGPN---------RITIENLRKSDTGNYGCNATNSLGYV 206
             +W +            R     +          +TI+ + +SD G Y C A++ L   
Sbjct: 257 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 316

Query: 207 YKDVYVNVL--AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY 264
               +V V         +          G+ V +  +  G P PE+ W  N   L    +
Sbjct: 317 KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLES-NH 375

Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH-----THITDQPEDYEV 319
           TI     L I +V+  D+G YT    N +   + S  +++  +        +        
Sbjct: 376 TIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSY 435

Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ------------------- 360
           + G + T  C   + P     I W    E        + V                    
Sbjct: 436 QYGTTQTLTCTVYAIP-PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494

Query: 361 ---------------SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
                           N    T+   +   S  Y C A  ++   E   +  V   
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRG 550

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  216 bits (552), Expect = 2e-60
 Identities = 86/456 (18%), Positives = 137/456 (30%), Gaps = 86/456 (18%)

Query: 32  APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK---- 87
                            +K+ L C           ++ +        +       K    
Sbjct: 223 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 282

Query: 88  --------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF---IN 136
                   +L I  V  SDQG YTC  S+G+   K+ S  + V   P+          + 
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN-STFVRVHEKPFVAFGSGMESLVE 341

Query: 137 AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYG 196
           A   E V    K  G P PEI W  NG P+     N   K G + +TI  + + DTGNY 
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPL---ESNHTIKAG-HVLTIMEVSERDTGNYT 397

Query: 197 CNATNSLGYVYKDVYVNVLAHAP----EITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VN 251
              TN +    +   V+++ + P    E +     +    G T  LTC V+  P P  ++
Sbjct: 398 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIH 457

Query: 252 WIHNQKEL----------------------------------TGGRYTILETGD---LKI 274
           W    +E                                      ++ ++E  +     +
Sbjct: 458 WYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTL 517

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
              A   S  Y C A NK+G  +   S  V     IT QP+  +    +S +  C A   
Sbjct: 518 VIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDM-QPTEQESVSLWCTADRS 576

Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQ---------------------SNDYSLTVTKSSE 373
                ++ W +                                    ++   + +  +S 
Sbjct: 577 T--FENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASL 634

Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFT 409
            D G Y C AQ             + V        T
Sbjct: 635 QDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTIT 670

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  191 bits (487), Expect = 9e-52
 Identities = 59/346 (17%), Positives = 101/346 (29%), Gaps = 66/346 (19%)

Query: 38  VTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSD------------------ 78
           +    +         L C     P P  I W         ++                  
Sbjct: 428 LISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRS 487

Query: 79  -----------------RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS 121
                             + +G       +     +    Y CE  N VG      I   
Sbjct: 488 VEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG-ERVISFH 546

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
           V   P  T++P+ +   E+E+V+  C A       + W   G                  
Sbjct: 547 VTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKN 605

Query: 182 I---------------------TIENLRKSDTGNYGCNATNSLG----YVYKDVYVNVLA 216
           +                      ++N    D G+Y C A +        V + + V    
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER- 664

Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGDLKI 274
            AP IT   +++ T  G+++ ++C   G P P++ W  + + L    G        +L I
Sbjct: 665 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI 724

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVE 320
             V   D G YTC A + LG A+      ++     T+    +   
Sbjct: 725 RRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHHH 770

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  184 bits (468), Expect = 4e-49
 Identities = 48/335 (14%), Positives = 95/335 (28%), Gaps = 32/335 (9%)

Query: 91  IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS 150
           ++         + C  +         S+ L +   P  +++ + +      T+   C+  
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLP-SVSLDL---PRLSIQKDILTIKANTTLQITCRG- 55

Query: 151 GLPEPEIHWVHNGKPISQAPPNPRRKVGPN----RITIENLRKSDTGNYGCNATNSLGYV 206
              + ++ W+               +         +TI  +  +DTG Y C    +    
Sbjct: 56  ---QRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS 112

Query: 207 YKDVYVNVLAHA----PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN---QKEL 259
              VYV                         KTVV+ C    +             +   
Sbjct: 113 VIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVP 172

Query: 260 TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ----PE 315
            G R +        I     + +G   C A+    + Q    + V     I D       
Sbjct: 173 DGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSH 232

Query: 316 DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP---------RFVQSNDYSL 366
             E+  G+     C A ++ ++ +   W   S     +              ++    +L
Sbjct: 233 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 292

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           T+   +  D G YTC A + L   +    + V   
Sbjct: 293 TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 327

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  131 bits (329), Expect = 1e-31
 Identities = 35/232 (15%), Positives = 68/232 (29%), Gaps = 18/232 (7%)

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF 243
           +++        + C  T +       V +++    P ++            T+ +TCR  
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLDL----PRLSIQKDILTIKANTTLQITCR-- 54

Query: 244 GAPKPEVNWIHNQKELTGG-RYTILETGD----LKITDVAFADSGEYTCFARNKLGTAQG 298
           G    +  W +NQ         T    G     L I  V   D+G Y CF R     +  
Sbjct: 55  GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVI 114

Query: 299 SGSLTVKEHTHITDQPEDYE-----VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE 353
              +       I    + +          ++    C   S  +L +S+      +     
Sbjct: 115 YVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCL-GSISNLNVSLCARYPEKRF-VP 172

Query: 354 SEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAP 405
              R    +    T+       +G   C A+   +  ++   + V V     
Sbjct: 173 DGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 224

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 77.5 bits (190), Expect = 7e-15
 Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 13/139 (9%)

Query: 281 DSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS 340
               + C           S SL +     ++ Q +   ++A  +    C    D      
Sbjct: 8   AVALWLCVETRAASVGLPSVSLDL---PRLSIQKDILTIKANTTLQITCRGQRDLD---- 60

Query: 341 IVWLRGSEPIDFESEPRFVQSND----YSLTVTKSSELDSGQYTCRAQTELDFIEAQATL 396
             WL  +     E      + +D     +LT+ K    D+G Y C  +           +
Sbjct: 61  --WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118

Query: 397 TVQVPLEAPSNFTLIQVID 415
                    S      V+ 
Sbjct: 119 QDYRSPFIASVSDQHGVVY 137

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  245 bits (626), Expect = 2e-74
 Identities = 73/384 (19%), Positives = 127/384 (33%), Gaps = 40/384 (10%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSD---- 98
               +   E+ C   G P+P+ IW + DG  +     + Q +    L+       D    
Sbjct: 15  DFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQE 74

Query: 99  --QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA---SGLP 153
                Y C   N  G   S  + +  + A Y+  +    +     +   +C         
Sbjct: 75  VHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADF 134

Query: 154 EPEIHWVHNGKP--ISQAPPNPRRKVGPN-RITIENLRKSDT-GNYGCNATNSLGYVYKD 209
              + W  + +      A  + +  V P+  + I  +   D   +Y C   + L    + 
Sbjct: 135 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 194

Query: 210 --------VYVNVLAHAPEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT 260
                   +   + + AP       K    +   T+ L C   G P P   W    +  T
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTT 254

Query: 261 GGRYTILET------GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP 314
             +  +L        G L I D    DSG+Y C   N +G       LTV         P
Sbjct: 255 RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP 314

Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL 374
               V+ G+ A F C    +P    ++ W++  + I           ++  L +    + 
Sbjct: 315 PTQTVDFGRPAVFTCQYTGNP--IKTVSWMKDGKAIG---------HSESVLRIESVKKE 363

Query: 375 DSGQYTCRAQTELDFIEAQATLTV 398
           D G Y C  + + +  EA A L +
Sbjct: 364 DKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  184 bits (469), Expect = 5e-52
 Identities = 69/320 (21%), Positives = 113/320 (35%), Gaps = 37/320 (11%)

Query: 125 APYFTVEPE-FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
            P F  EP   I+ +       ECKASG P PEI W+ +        P  R+     ++ 
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62

Query: 184 IENLRKSDT------GNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
               R  D         Y C A N  G +  +DV+V     A         E+ + G + 
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA-VVAQYYEADVNKEHVIRGNSA 121

Query: 237 VLTCRV---FGAPKPEVNWIHNQKEL------TGGRYTILETGDLKITDVAFADS-GEYT 286
           V+ C +          V+W  +++E         G+Y +L +G+L I +V   D    Y 
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 181

Query: 287 CFARNKLGTAQGSGS----------LTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPS 336
           C  +++L       +          ++           +  E+    + +  C A   P 
Sbjct: 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFP- 240

Query: 337 LKLSIVWLRGSEPIDFESEPRF---VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ 393
              S  W +  E    +        V+    +L +  +   DSG+Y C     +     +
Sbjct: 241 -APSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE 299

Query: 394 ATLTVQVPLEA---PSNFTL 410
             LTV  PL A   P   T+
Sbjct: 300 TVLTVTAPLSAKIDPPTQTV 319

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  180 bits (458), Expect = 2e-50
 Identities = 46/212 (21%), Positives = 74/212 (34%), Gaps = 18/212 (8%)

Query: 7   SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
            E ++       VI    +   +  AP+   + +K    +    + L C   G P P   
Sbjct: 190 GETRLSATKGRLVI----TEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFR 245

Query: 67  WSKDGVPINPSDRISQGNY----GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
           W K          +   +       +LIIK     D G Y C V+N VG   S    L+V
Sbjct: 246 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVETVLTV 304

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
            A     ++P            F C+ +G P   + W+ +GK I             + +
Sbjct: 305 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH---------SESVL 355

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
            IE+++K D G Y C   N          + +
Sbjct: 356 RIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  239 bits (610), Expect = 6e-73
 Identities = 65/309 (21%), Positives = 106/309 (34%), Gaps = 44/309 (14%)

Query: 38  VTRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEF 96
           V            V L C           +W KD   I+  ++    +   +L+I     
Sbjct: 11  VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 70

Query: 97  SDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL---- 152
            D G Y   + +  G+ KS  + L   A     +E     A     +  +  A G+    
Sbjct: 71  KDAGIYEVILKDDRGKDKS-RLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYS 129

Query: 153 ------PEPEIHWVHNGKPISQAPPNPRRKVGPN----RITIENLRKSDTGNYGCNATNS 202
                  + +++W HNG  I     + R K G       + I     +D G Y     + 
Sbjct: 130 FVTYYVEDLKVNWSHNGSAIR---YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDG 186

Query: 203 LGYVYKDVYVNVLAH--------------------APEITEAPKDEYTVDGKTVVLTCRV 242
                K V ++  A+                    A  +   P      +GK + LTC V
Sbjct: 187 KTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV 246

Query: 243 FGAPKPEVNWIHNQKELT-GGRYTILETGD----LKITDVAFADSGEYTCFARNKLGTAQ 297
           +G P PEV+W+ N+K L       +           I  V+ ADSG+Y    +NK G+  
Sbjct: 247 WGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSET 306

Query: 298 GSGSLTVKE 306
              +++V  
Sbjct: 307 SDFTVSVFI 315

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  203 bits (517), Expect = 2e-59
 Identities = 51/322 (15%), Positives = 101/322 (31%), Gaps = 47/322 (14%)

Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKV- 177
           +     P+F     +     E  V  +CK + +  E  I W  + + I     + +    
Sbjct: 2   IDPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREI---SVDEKHDFK 57

Query: 178 -GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
            G   + I    K D G Y     +  G     + +   A   E+      +  +    +
Sbjct: 58  DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA-FKELMMEVCKKIALSATDL 116

Query: 237 VLTCR----------VFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKITDVAFADS 282
            +              +     +VNW HN   +    R     TG+   L+I +    D 
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 176

Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTH---------------------ITDQPEDYEVEA 321
           G+Y     +     Q +  L+ + +                       +   P+   ++ 
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 236

Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--YSLTVTKSSELDSGQY 379
           G++    CN   DP     + WL+  + +  +               T+   S  DSG+Y
Sbjct: 237 GKALNLTCNVWGDP--PPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKY 294

Query: 380 TCRAQTELDFIEAQATLTVQVP 401
               + +     +  T++V +P
Sbjct: 295 GLVVKNKYGSETSDFTVSVFIP 316

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  139 bits (352), Expect = 9e-37
 Identities = 31/204 (15%), Positives = 65/204 (31%), Gaps = 13/204 (6%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVNWIHNQKELT-GGRYTILE-TGDLKI 274
            P   E    E       V+L C+V    K   + W  +++E++   ++   +    L I
Sbjct: 7   GPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLI 65

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
           T+ +  D+G Y    ++  G  +    L  +    +  +       +      +  A   
Sbjct: 66  TEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGI 125

Query: 335 PSL--------KLSIVWLRGSEPIDFESEPRFVQSND-YSLTVTKSSELDSGQYTCRAQT 385
                       L + W      I +    +   + +   L + + +  D G+Y      
Sbjct: 126 QLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD 185

Query: 386 ELDFIEAQATLTVQVPLEAPSNFT 409
                +    L+ Q   EA + F 
Sbjct: 186 GKTGHQKTVDLSGQAYDEAYAEFQ 209

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  229 bits (584), Expect = 9e-67
 Identities = 52/326 (15%), Positives = 103/326 (31%), Gaps = 42/326 (12%)

Query: 28  QNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYG 86
               A     V++   +    ++  + C            W ++       ++ +  ++G
Sbjct: 206 PAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHG 265

Query: 87  K-------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF---IN 136
                   +L I     +D G + C  +N  G A + +  L V+   +  + P     + 
Sbjct: 266 DFNYERQATLTISSARVNDSGVFMCYANNTFGSA-NVTTTLEVVDKGFINIFPMINTTVF 324

Query: 137 AAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRI------TIENLRK 189
             + E V    +    P+PE   W++  +  +    +  +    + I       +  L+ 
Sbjct: 325 VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKG 384

Query: 190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE 249
           ++ G Y    +NS         V V    PEI    +          +L C   G P+P 
Sbjct: 385 TEGGTYTFLVSNSDVNAAIAFNVYVNT-KPEILTYDR------LVNGMLQCVAAGFPEPT 437

Query: 250 VNWIH--------NQKELTGGRYTILETGD--------LKITDVAFADSGEYTCFARNKL 293
           ++W          +   L     T+  +G           I   AF  +G   C A N +
Sbjct: 438 IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDV 497

Query: 294 GTAQGSGSLTVKEHTHITDQPEDYEV 319
           G      +   K +      P  +  
Sbjct: 498 GKTSAYFNFAFKGNNKEQIHPHHHHH 523

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  228 bits (581), Expect = 2e-66
 Identities = 68/419 (16%), Positives = 110/419 (26%), Gaps = 47/419 (11%)

Query: 21  ATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDR 79
               S       P + ++  +      +    + C      +         G P+    R
Sbjct: 102 GLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR 161

Query: 80  ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL----AAPYFTVEPEFI 135
                    +I        +    C V        S    L V     A P  +V     
Sbjct: 162 FIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASY 221

Query: 136 NAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRI------TIENLR 188
              E E  T  C    +       W                  G          TI + R
Sbjct: 222 LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSAR 281

Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV---DGKTVVLTCRVFGA 245
            +D+G + C A N+ G       + V+     I   P    TV   DG+ V L       
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLEVVD-KGFINIFPMINTTVFVNDGENVDLIVEYEAF 340

Query: 246 PKPE-VNWIHNQKELTG---------GRYTILETGDLKITDVAFADSGEYTCFARNKLGT 295
           PKPE   WI+  +  T              I    +L +T +   + G YT    N    
Sbjct: 341 PKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN 400

Query: 296 AQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESE 355
           A  + ++ V         PE    +   +   +C A   P  + +I W          S 
Sbjct: 401 AAIAFNVYVNTK------PEILTYDRLVNGMLQCVAAGFP--EPTIDWYFCPGTEQRCSA 452

Query: 356 PRFVQ-------------SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
                                   ++  S+   +G   C+A  ++    A      +  
Sbjct: 453 SVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  218 bits (556), Expect = 8e-63
 Identities = 68/445 (15%), Positives = 130/445 (29%), Gaps = 48/445 (10%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
           +     ++ L C   G       W+ + +     ++          I +  E ++ G YT
Sbjct: 47  IVRVGDEIRLLCTDPGFV----KWTFEILDETNENK------QNEWITEKAEATNTGKYT 96

Query: 104 CEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
           C   +G+      SI + V       +    +   E+      C  +  PE   + +   
Sbjct: 97  CTNKHGLSN----SIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTD-PEVTNYSLKGC 151

Query: 164 KPISQAPPNPRRKVGPNR-ITIENLRKS-DTGNYGCNATNSLGYVYKD---VYVNVLAHA 218
           +     P + R    P   I I++++++       C+       V  +   + V     A
Sbjct: 152 QGKP-LPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKA 210

Query: 219 PEITEAPKDEYTVD-GKTVVLTCRVFGAPKP-EVNWIHNQKELT---------GGRYTIL 267
             +    K  Y +  G+   +TC +          W     +            G +   
Sbjct: 211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE 270

Query: 268 ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE---DYEVEAGQS 324
               L I+     DSG + C+A N  G+A  + +L V +   I   P       V  G++
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGEN 330

Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQ 378
                   + P  +    W+  +     + E      N+        L +T+    + G 
Sbjct: 331 VDLIVEYEAFPKPE-HQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT 389

Query: 379 YTCRAQTELDFIEAQATLTVQVP-----LEAPSNFTLI-QVIDAKKAVVSWNPVSPQSLR 432
           YT               + V         +   N  L        +  + W        R
Sbjct: 390 YTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQR 449

Query: 433 GHFRGYKVQTWTEKDGEGSIRELIV 457
                  V   T         +L+V
Sbjct: 450 CSASVLPVDVQTLNSSGPPFGKLVV 474

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  179 bits (454), Expect = 1e-48
 Identities = 45/324 (13%), Positives = 88/324 (27%), Gaps = 39/324 (12%)

Query: 98  DQGSYTCEV----SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLP 153
               + C +        G +   S+     + P        +     + +   C   G  
Sbjct: 6   GAWDFLCVLLLLLRVQTGSS-QPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG-- 62

Query: 154 EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
              + W       +            N    E    ++TG Y C   + L      +YV 
Sbjct: 63  --FVKWTFEILDETNENKQ-------NEWITEKAEATNTGKYTCTNKHGLS---NSIYVF 110

Query: 214 VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL---TGGRYTILETG 270
           V     ++    +  Y  +    ++ C +   P+     +   +        R+      
Sbjct: 111 VRD-PAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKA 168

Query: 271 DLKITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKEHT------HITDQPEDYEVEAGQ 323
            + I  V  A       C    + G +  S    +K          ++     Y +  G+
Sbjct: 169 GIMIKSVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGE 227

Query: 324 SATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSG 377
             T  C         +   W R +     + +       D+      +LT++ +   DSG
Sbjct: 228 EFTVTCTIKDVS-SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 286

Query: 378 QYTCRAQTELDFIEAQATLTVQVP 401
            + C A           TL V   
Sbjct: 287 VFMCYANNTFGSANVTTTLEVVDK 310

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 78.9 bits (194), Expect = 2e-15
 Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 20/145 (13%)

Query: 281 DSGEYTC----FARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPS 336
            + ++ C      R + G++Q S S        I     D  V  G      C       
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG--- 62

Query: 337 LKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATL 396
               + W         E      ++        K+   ++G+YTC  +  L        +
Sbjct: 63  ---FVKWTF-------EILDETNENKQNEWITEKAEATNTGKYTCTNKHGL---SNSIYV 109

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVV 421
            V+ P +       +   +    +V
Sbjct: 110 FVRDPAKLFLVDRSLYGKEDNDTLV 134

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  214 bits (548), Expect = 1e-65
 Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 2/186 (1%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
           +  AP  T   E ++A  EE  TF C     P+PEI W  N   I         +     
Sbjct: 4   LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCR 241
           +TI ++  SD G Y C A N +G   +      +   P+IT  P +   ++G   VL C 
Sbjct: 64  LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT 123

Query: 242 VFGAPKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG 300
             G PKP V+WI     L    R  +LE+G L+I +V   D+G+Y C A+N LGTA    
Sbjct: 124 TMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKL 183

Query: 301 -SLTVK 305
             L V+
Sbjct: 184 VKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  162 bits (412), Expect = 3e-46
 Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 9/192 (4%)

Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGD- 271
           L  AP IT   +    +  +     C V   P+PE++W  N+  +     RY+I E G  
Sbjct: 4   LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63

Query: 272 LKITDVAFADSGEYTCFARNKLGTA-QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
           L I  V  +D G Y C A N +G A +  G+L VK    IT  P + ++  G  A   C 
Sbjct: 64  LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT 123

Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
            + +P  K S+ W++G   +      R       SL +    + D+GQY C A+  L   
Sbjct: 124 TMGNP--KPSVSWIKGDSALR--ENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179

Query: 391 EAQ-ATLTVQVP 401
            ++   L V+V 
Sbjct: 180 YSKLVKLEVEVF 191

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  162 bits (411), Expect = 3e-46
 Identities = 55/178 (30%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSY 102
            AL  +     C     P P+  W+++ + I   D R S    G+ L I  VE SD G Y
Sbjct: 18  DALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIY 77

Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN 162
            C  +NGVG A      L V   P  T  P  +   E       C   G P+P + W+  
Sbjct: 78  CCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG 137

Query: 163 GKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYK---DVYVNVLA 216
              +     N R  V  +  + I N++K D G Y C A NSLG  Y     + V V A
Sbjct: 138 DSAL---RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 79.8 bits (197), Expect = 3e-17
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 304 VKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND 363
           + +   IT   E  +    + ATF C   S P  +  I W R    I        ++ N 
Sbjct: 4   LPKAPVITTPLETVDALVEEVATFMCAVESYP--QPEISWTRNKILIKLFDTRYSIRENG 61

Query: 364 YSLTVTKSSELDSGQYTCRAQTEL-DFIEAQATLTVQVP---LEAPSNFTLIQ 412
             LT+    + D G Y C A   +   +E+   L V++       P N  +I+
Sbjct: 62  QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIE 114

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  204 bits (521), Expect = 1e-61
 Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 12/194 (6%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN---R 181
           AP+F  E   +N   +   T  CK +G P+P + W   GK I       R +       +
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA----HAPEITEAPKDEYTVDGKTVV 237
           + I ++   D   Y   ATN  G V     + V      H P+  E     + + G+ V 
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 238 LTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD----LKITDVAFADSGEYTCFARNK 292
           +     G P P + W   Q  +   G Y ++ T      +    V   D+G Y   A+N+
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 293 LGTAQGSGSLTVKE 306
            G  Q +  L V +
Sbjct: 184 FGIDQKTVELDVAD 197

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  151 bits (382), Expect = 4e-42
 Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 15/197 (7%)

Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGD-- 271
           A AP   E  ++          L C+V G PKP V W    KE+   G +Y I E     
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 272 --LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI-----TDQPEDYEVEAGQS 324
             L I  V   D+  Y   A N+ G+  G+ SL V+    I      +         G+ 
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS--LTVTKSSELDSGQYTCR 382
            + +      P     I W +G + ID     + + +  ++  +        D+G Y   
Sbjct: 122 VSIKIPFSGKP--DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179

Query: 383 AQTELDFIEAQATLTVQ 399
           A+      +    L V 
Sbjct: 180 AKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  147 bits (374), Expect = 4e-41
 Identities = 44/185 (23%), Positives = 59/185 (31%), Gaps = 18/185 (9%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGK-SLIIKHVEFSDQ 99
                    L C   G P P   W + G  I       RI +   G   LII  V   D 
Sbjct: 15  NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDA 74

Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLA-----APYFTVEPEFINAAEEETVTFECKASGLPE 154
             Y    +N  G     +  L V        P        ++A   E V+ +   SG P+
Sbjct: 75  TVYQVRATNQGGSVSG-TASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD 133

Query: 155 PEIHWVHNGKPISQAPPNPRRKVGPNR-----ITIENLRKSDTGNYGCNATNSLGYVYKD 209
           P I W      I     N   +V   R     +    + + D G Y   A N  G   K 
Sbjct: 134 PVITWQKGQDLID---NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKT 190

Query: 210 VYVNV 214
           V ++V
Sbjct: 191 VELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 80.5 bits (199), Expect = 1e-17
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
           H  ++  +  V    +AT  C     P  K  + W R  + I  +     +Q      + 
Sbjct: 6   HFKEELRNLNVRYQSNATLVCKVTGHP--KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP--LEAPSNFTLIQVIDAKK 418
           L +   ++ D+  Y  RA  +   +   A+L V+VP  +  P     +  + A +
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALR 118

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  200 bits (511), Expect = 2e-60
 Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 9/190 (4%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV---GPNR 181
           AP FT   + +   E  T TFE   SG P PE+ W  +G+ IS +     +     G  +
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH--APEITEAPKDEYTVDGKTVVLT 239
           +TI  + K+++G Y   ATN  G       + V A    P   +  +      G  V L 
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124

Query: 240 CRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKITDVAFADSGEYTCFARNKLGT 295
            RV G P P V +  +  E+     + I + GD   L I +    DSG Y+  A N +G 
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184

Query: 296 AQGSGSLTVK 305
           A  +  L V+
Sbjct: 185 ATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  157 bits (398), Expect = 2e-44
 Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 12/193 (6%)

Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD-- 271
            AP  T+  +    ++G T      + G P PEV+W  + + ++        I  +    
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---HITDQPEDYEVEAGQSATF 327
            L I  V  A+SG Y+  A N  G A  +  L VK  T   +   + +   V  G     
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123

Query: 328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND-YSLTVTKSSELDSGQYTCRAQTE 386
           +      P     + + R    I    + +  Q  D YSL + ++   DSG Y+  A   
Sbjct: 124 QVRVTGIP--TPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181

Query: 387 LDFIEAQATLTVQ 399
           +    + A L VQ
Sbjct: 182 VGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  150 bits (380), Expect = 6e-42
 Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 15/182 (8%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGNYGKSLIIKHVEFSDQ 99
           V L            G P+P+  W +DG  I+ S     +IS  +    L I  V  ++ 
Sbjct: 16  VVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANS 75

Query: 100 GSYTCEVSNGVGEAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASGLPEPE 156
           G Y+ + +NG G+A S + +L V    A P F    + +   +   V  + + +G+P P 
Sbjct: 76  GRYSLKATNGSGQATS-TAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPV 134

Query: 157 IHWVHNGKPISQAPPNPRRKVGPN----RITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212
           + +  +G  I     +   ++        + I      D+G Y  NATNS+G       +
Sbjct: 135 VKFYRDGAEI---QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191

Query: 213 NV 214
            V
Sbjct: 192 LV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 82.8 bits (205), Expect = 2e-18
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF---VQSNDYS 365
             T   +   V  G +ATF  +    P     + W R  + I   + P            
Sbjct: 7   TFTQPLQSVVVLEGSTATFEAHISGFP--VPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
           LT+   ++ +SG+Y+ +A        + A L V+     P+
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPN 105

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  202 bits (515), Expect = 2e-59
 Identities = 57/299 (19%), Positives = 98/299 (32%), Gaps = 38/299 (12%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
                  +   C    TP  +  WSKD V    S R  +        +  K +   D G 
Sbjct: 14  DDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGI 72

Query: 102 YTCEVSNGVGEAKSYSIDLSVL-----------AAPYFTVEPEFINAAEEETVTFECKA- 149
           Y+C+V++  G A SY ID   L                      +   E+  V F  +A 
Sbjct: 73  YSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAE 132

Query: 150 SGLPEPEIHWVHNGKPISQAPP---NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV 206
                 +++++ N K I + P    +  R  G   + +E L+  D G Y     +     
Sbjct: 133 KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN 192

Query: 207 YKDVYVNVLAHAPEITEA-----------------PKDEYTVDGKTVVLTCRVFGAPKP- 248
           +  V +          EA                            V+L C+V    K  
Sbjct: 193 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET 252

Query: 249 EVNWIHNQKELTGGRYTILETGD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
            + W  +++E++       + G   L IT+ +  D+G Y    ++  G  +    L  +
Sbjct: 253 HIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  181 bits (460), Expect = 1e-51
 Identities = 50/315 (15%), Positives = 105/315 (33%), Gaps = 46/315 (14%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN---- 180
            P+       ++     ++ FEC     P+ E  W  +         +PR +V       
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDKMT-PKSEFSWSKDYVST---EDSPRLEVESKGNKT 58

Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV-----------LAHAPEITEAPKD-E 228
           ++T ++L   D G Y C+ T++ G     +                       ++    E
Sbjct: 59  KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE 118

Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD-----LKITDVAFADS 282
               G+          +   +VN+I N+KE+  G +Y +    +     + +  +   D 
Sbjct: 119 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDE 178

Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITD------------------QPEDYEVEAGQS 324
           G YT   ++   T   +  L       +                    +   +EV    +
Sbjct: 179 GTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECN 238

Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ 384
              +C  V++   +  IVW +    I    E    +    +L +T+ S+ D+G Y    +
Sbjct: 239 VLLKC-KVANIKKETHIVWYKDEREIS-VDEKHDFKDGICTLLITEFSKKDAGIYEVILK 296

Query: 385 TELDFIEAQATLTVQ 399
            +    +++  L  +
Sbjct: 297 DDRGKDKSRLKLVDE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  124 bits (312), Expect = 2e-31
 Identities = 28/200 (14%), Positives = 59/200 (29%), Gaps = 29/200 (14%)

Query: 30  RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNY 85
           +            E+  + +          +   +  +  +   I    +    I +   
Sbjct: 105 KFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG 164

Query: 86  GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF----------- 134
              + ++ ++  D+G+YT ++ +G     S ++ L          E EF           
Sbjct: 165 IIEMFMEKLQDEDEGTYTFQLQDGKATNHS-TVVLVGDVFKKLQKEAEFQRQEWIRKQGP 223

Query: 135 -------INAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKV--GPNRITI 184
                       E  V  +CK + +  E  I W  + + I     + +     G   + I
Sbjct: 224 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI---SVDEKHDFKDGICTLLI 280

Query: 185 ENLRKSDTGNYGCNATNSLG 204
               K D G Y     +  G
Sbjct: 281 TEFSKKDAGIYEVILKDDRG 300

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  116 bits (291), Expect = 1e-28
 Identities = 31/210 (14%), Positives = 57/210 (27%), Gaps = 23/210 (10%)

Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD--- 271
              P   E   +       ++   C     PK E +W  +        R  +   G+   
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQG------------SGSLTVKEHTHITDQPEDYEV 319
           +   D+   D G Y+C   +  G A              + S   K  T         E+
Sbjct: 60  MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119

Query: 320 EAGQSATFRCNAV-SDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSLTVTKSSELD 375
                  F   A          + ++   + I    + +     +     + + K  + D
Sbjct: 120 LEKGQVRFWMQAEKLSG--NAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177

Query: 376 SGQYTCRAQTELDFIEAQATLTVQVPLEAP 405
            G YT + Q       +   L   V  +  
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 75.8 bits (186), Expect = 5e-15
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 2/86 (2%)

Query: 38  VTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHVEF 96
           V            V L C          I W KD   I+  ++    +   +L+I     
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 285

Query: 97  SDQGSYTCEVSNGVGEAKSYSIDLSV 122
            D G Y   + +  G+ KS  + L  
Sbjct: 286 KDAGIYEVILKDDRGKDKS-RLKLVD 310

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  198 bits (506), Expect = 2e-59
 Identities = 58/210 (27%), Positives = 82/210 (39%), Gaps = 13/210 (6%)

Query: 121 SVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           +    P    +P+          +F C A G P P I W  NGK +S           P 
Sbjct: 2   TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61

Query: 181 RITIENL----RKSDTGNYGCNATNSLG-YVYKDVYVNVL------AHAPEITEAPKDEY 229
            I+I  +       D   Y C A N +G  V  D  + +       A  P IT+ P    
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121

Query: 230 TVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGDLKITDVAFADSGEYTCF 288
              G TV++TC+  G P P + WI NQ ++        L+ G L+I +    D G+Y C 
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181

Query: 289 ARNKLGTAQGSGS-LTVKEHTHITDQPEDY 317
           A N +GT     + L VK     T     +
Sbjct: 182 AENSMGTEHSKATNLYVKVRRVGTKHHHHH 211

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  151 bits (383), Expect = 4e-42
 Identities = 58/202 (28%), Positives = 85/202 (42%), Gaps = 20/202 (9%)

Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGD-- 271
           AH PEI   P+++    G      C   G P P + W  N K++  T  RYT+LE     
Sbjct: 4   AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63

Query: 272 --LKITDVAFA-DSGEYTCFARNKLGTA-QGSGSLTVKEHT-------HITDQPEDYEVE 320
             L+I  V    D   Y C A N +G A     +LT+ E          IT  P    +E
Sbjct: 64  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123

Query: 321 AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT 380
            G +    C A+ +P    +I W++    +D  +        D  L +  S E D G+Y 
Sbjct: 124 VGHTVLMTCKAIGNP--TPNIYWIKNQTKVDMSN--PRYSLKDGFLQIENSREEDQGKYE 179

Query: 381 CRAQTELDFIEAQAT-LTVQVP 401
           C A+  +    ++AT L V+V 
Sbjct: 180 CVAENSMGTEHSKATNLYVKVR 201

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  149 bits (379), Expect = 2e-41
 Identities = 51/198 (25%), Positives = 73/198 (36%), Gaps = 18/198 (9%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKSLIIKHV-EFSD 98
                     +C   G P P  +W K+G  ++ +      + Q      L I+ V    D
Sbjct: 17  GVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRD 76

Query: 99  QGSYTCEVSNGVGEAKSYSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECKASG 151
              Y C   NGVG+A S    L++          P  T  P         TV   CKA G
Sbjct: 77  DAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG 136

Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVY-KD 209
            P P I+W+ N   +     +  R    +  + IEN R+ D G Y C A NS+G  + K 
Sbjct: 137 NPTPNIYWIKNQTKV---DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKA 193

Query: 210 VYVNVLAHAPEITEAPKD 227
             + V       T+    
Sbjct: 194 TNLYVKV-RRVGTKHHHH 210

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 76.8 bits (189), Expect = 5e-16
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN 362
           T      I  +P++  V  G  A+F C A  DP    SIVW +  + +        V   
Sbjct: 2   TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDP--PPSIVWRKNGKKVSGTQSRYTVLEQ 59

Query: 363 DYSLTVTK----SSELDSGQYTCRAQTEL-DFIEAQATLTVQVPLEAPSNFTLIQV 413
              +++ +     +  D   Y C A+  + D + A ATLT+    + P+ F +I  
Sbjct: 60  PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQ 115

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  198 bits (506), Expect = 4e-59
 Identities = 57/232 (24%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 110 VGEAKSYSIDLSVLAAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
           + E    S + +   APY+T    +E          TV F C A G P P + W+ NGK 
Sbjct: 1   MAE-DFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE 59

Query: 166 ISQAPPNPRRKVGPNR--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA----P 219
             Q       KV      + +E++  SD GNY C   N  G +    +++V+  +     
Sbjct: 60  FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 119

Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG---------------GRY 264
                P +  TV G  V   C+V+   +P + WI + ++                     
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179

Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPED 316
                  L + +V  AD+GEY C   N +G A  S  LTV        + ++
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKE 231

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  156 bits (397), Expect = 9e-44
 Identities = 54/218 (24%), Positives = 76/218 (34%), Gaps = 28/218 (12%)

Query: 216 AHAPEITEAPKDE---YTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTI 266
             AP  T   K E   + V    TV   C   G P P + W+ N KE       GG    
Sbjct: 13  KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 72

Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEA 321
            +   L +  V  +D G YTC   N+ G+   +  L V E +          P +     
Sbjct: 73  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV 132

Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP------------RFVQSNDYSLTVT 369
           G    F C   SD   +  I W++  E    +  P                SN   L + 
Sbjct: 133 GGDVEFVCKVYSDA--QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
             +E D+G+Y C+    +      A LTV    +AP  
Sbjct: 191 NVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR 228

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  146 bits (370), Expect = 3e-40
 Identities = 51/224 (22%), Positives = 82/224 (36%), Gaps = 25/224 (11%)

Query: 27  SQNRHAP---KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG 83
           S N+ AP     + + ++         V+  C  GG P+P   W K+G       RI   
Sbjct: 10  SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 69

Query: 84  NY---GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA-----PYFTVEPEFI 135
                  SLI++ V  SD+G+YTC V N  G     +  L V+             P   
Sbjct: 70  KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH-TYHLDVVERSRHRPILQAGLPANA 128

Query: 136 NAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN---PRRKVGPNRI---------T 183
           +      V F CK     +P I W+ + +           P  KV  +            
Sbjct: 129 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLA 188

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKD 227
           + N+ ++D G Y C  +N +G   +  ++ VL    +     K+
Sbjct: 189 LFNVTEADAGEYICKVSNYIGQANQSAWLTVLP-KQQAPGREKE 231

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  201 bits (513), Expect = 4e-59
 Identities = 69/307 (22%), Positives = 106/307 (34%), Gaps = 30/307 (9%)

Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILE----T 269
           A AP   E  ++          L C+V G PKP V W    KE+   G +Y I E     
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT-----DQPEDYEVEAGQS 324
             L I  V   D+  Y   A N+ G+  G+ SL V+    I      +         G+ 
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS--LTVTKSSELDSGQYTCR 382
            + +      P     I W +G + ID     + + +  ++  +        D+G Y   
Sbjct: 122 VSIKIPFSGKPDPV--ITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179

Query: 383 AQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKK--AVVSWNPVSPQSLRGH-FRGYK 439
           A+      +    L V    + P     ++V D  +    ++W    P S  G     Y 
Sbjct: 180 AKNRFGIDQKTVELDVADVPDPPRG---VKVSDVSRDSVNLTWTE--PASDGGSKITNYI 234

Query: 440 VQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEIIS-F 497
           V+         + R L V +   T   V      +   F RV+A N      PSE     
Sbjct: 235 VEKCA----TTAERWLRVGQARETRYTVINLFGKTSYQF-RVIAENKFGLSKPSEPSEPT 289

Query: 498 VTPEGVP 504
           +T E   
Sbjct: 290 ITKEDKT 296

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  154 bits (391), Expect = 4e-42
 Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 12/194 (6%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-- 182
           AP+F  E   +N   +   T  CK +G P+P + W   GK I       R +        
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 183 -TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA----HAPEITEAPKDEYTVDGKTVV 237
             I ++   D   Y   ATN  G V     + V      H P+  E     + + G+ V 
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 238 LTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD----LKITDVAFADSGEYTCFARNK 292
           +     G P P + W   Q  +   G Y ++ T      +    V   D+G Y   A+N+
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 293 LGTAQGSGSLTVKE 306
            G  Q +  L V +
Sbjct: 184 FGIDQKTVELDVAD 197

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  136 bits (344), Expect = 9e-36
 Identities = 46/218 (21%), Positives = 69/218 (31%), Gaps = 30/218 (13%)

Query: 41  KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGK-SLIIKHVEF 96
           +           L C   G P P   W + G  I       RI +   G   LII  V  
Sbjct: 12  RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTD 71

Query: 97  SDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV-----EPEFINAAEEETVTFECKASG 151
            D   Y    +N  G     +  L V       +         ++A   E V+ +   SG
Sbjct: 72  DDATVYQVRATNQGGSVSG-TASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG 130

Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATNSLGYV 206
            P+P I W      I     N   +V       + +    + + D G Y   A N  G  
Sbjct: 131 KPDPVITWQKGQDLI---DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID 187

Query: 207 YKDVYVNVLA-----HAPEITEAPKDEYTVDGKTVVLT 239
            K V ++V          ++++       V   +V LT
Sbjct: 188 QKTVELDVADVPDPPRGVKVSD-------VSRDSVNLT 218

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 83.7 bits (207), Expect = 1e-17
 Identities = 48/302 (15%), Positives = 96/302 (31%), Gaps = 38/302 (12%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY---S 365
           H  ++  +  V    +AT  C     P  K  + W R  + I  +     +Q        
Sbjct: 6   HFKEELRNLNVRYQSNATLVCKVTGHP--KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP--LEAPSNFTLIQVIDAKKAVVSW 423
           L +   ++ D+  Y  RA  +   +   A+L V+VP  +  P     +  + A +     
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG---- 119

Query: 424 NPVSPQSLRGHFRGYKVQT--WTEKDGE----GSIRELIVNKGESTTTEVDKFVPASKNF 477
                 S++  F G       W  K  +        ++IV +  ++    +      +  
Sbjct: 120 ---EVVSIKIPFSGKPDPVITWQ-KGQDLIDNNGHYQVIVTRSFTSLVFPNG---VERKD 172

Query: 478 A---RVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV- 533
           A    V A N        +    +    VP   + ++   +   +  L W +P    G  
Sbjct: 173 AGFYVVCAKNRFGI---DQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSK 229

Query: 534 LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593
           +  Y ++  +    +   +            T   +  L   T Y+  +    K G    
Sbjct: 230 ITNYIVEKCATTAERWLRV-------GQARETRYTVINLFGKTSYQFRVIAENKFGLSKP 282

Query: 594 SK 595
           S+
Sbjct: 283 SE 284

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  199 bits (506), Expect = 5e-59
 Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 30/234 (12%)

Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
            APY+T    ++ + +      TV F C A+G P P I W+ NG+           K+  
Sbjct: 10  GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69

Query: 180 NR--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPE----ITEAPKDEYTVDG 233
            +  + +E++  SD GNY C   N  G + +   ++VL  +P         P ++  V G
Sbjct: 70  QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 129

Query: 234 KTVVLTCRVFGAPKPEVNWIHNQKEL----------------TGGRYTILETGDLKITDV 277
             V   C+V+   +P + W+ + +                  +    ++     L++ +V
Sbjct: 130 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV 189

Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNA 331
           +  D GEY C A N +G A+ +  L+V       ++     VEA ++ +   + 
Sbjct: 190 SERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEEL----VEADEAGSVHHHH 239

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  150 bits (381), Expect = 1e-41
 Identities = 55/223 (24%), Positives = 77/223 (34%), Gaps = 29/223 (13%)

Query: 214 VLAHAPEITEAPKDE---YTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRY 264
           V   AP  T   + +     V    TV   C   G P P ++W+ N +E       GG  
Sbjct: 7   VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK 66

Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEV 319
              +   L +  V  +D G YTC   NK G+ + + +L V E +          P +   
Sbjct: 67  LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 126

Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP-------------RFVQSNDYSL 366
             G    F C   SD   +  I WL+  E    +  P                   D  L
Sbjct: 127 VLGSDVEFHCKVYSDA--QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFT 409
            +   SE D G+Y CRA   +   E    L+V  P  A     
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELV 227

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  141 bits (358), Expect = 2e-38
 Identities = 54/232 (23%), Positives = 80/232 (34%), Gaps = 34/232 (14%)

Query: 30  RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY---G 86
           R   K   V     V  R       C   G P P   W K+G       RI         
Sbjct: 19  RMDKKLLAVPAANTVRFR-------CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 71

Query: 87  KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA-----APYFTVEPEFINAAEEE 141
            SL+++ V  SD+G+YTC V N  G  +  +  L VL             P    A    
Sbjct: 72  WSLVMESVVPSDRGNYTCVVENKFGSIRQ-TYTLDVLERSPHRPILQAGLPANQTAVLGS 130

Query: 142 TVTFECKASGLPEPEIHWVHNGKPI-SQAPPNPRRKVGPNRI------------TIENLR 188
            V F CK     +P I W+ + +   S+  P+    V   +              + N+ 
Sbjct: 131 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190

Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
           + D G Y C ATN +G   K  +++V         A ++E     +   +  
Sbjct: 191 ERDGGEYLCRATNFIGVAEKAFWLSVHG-----PRAAEEELVEADEAGSVHH 237

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  195 bits (498), Expect = 1e-58
 Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 5/186 (2%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
           +   F          + E     C+ S  P P + W+++ + ++    N    +  N + 
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60

Query: 184 IENLRKSDTGNYGCNATNS-LGYVYKDVYVNVLAHAPEIT--EAPKDEYTVDGKTVVLTC 240
           I N+ KSD G Y C       G +     + ++   P I+  +   +     G+ +  +C
Sbjct: 61  ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 120

Query: 241 RVFGAPKPEVNWIHNQKELT-GGRYTIL-ETGDLKITDVAFADSGEYTCFARNKLGTAQG 298
           R  G+P+P ++W  N K +    +Y +     +L + ++  +D G Y C A NK G  + 
Sbjct: 121 RASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 180

Query: 299 SGSLTV 304
              L V
Sbjct: 181 QAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  154 bits (390), Expect = 2e-43
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 10/190 (5%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKI 274
                E    +    G+   + CRV  +P P V+W+++ +E+T     R+ +L   +L+I
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT----HITDQPEDYEVEAGQSATFRCN 330
            ++  +D G Y C  R +         + V  +      +  +  +   E G+  TF C 
Sbjct: 62  LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121

Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
           A   P  + +I W R  + I+ E+E   ++ ++  LTV      D G Y CRA  +    
Sbjct: 122 ASGSP--EPAISWFRNGKLIE-ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGED 178

Query: 391 EAQATLTVQV 400
           E QA L V V
Sbjct: 179 EKQAFLQVFV 188

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  144 bits (365), Expect = 7e-40
 Identities = 53/194 (27%), Positives = 78/194 (40%), Gaps = 18/194 (9%)

Query: 30  RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP--SDRISQGNYGK 87
           R     Q   +        +  E+ C    +P P   W      +     +R +      
Sbjct: 6   REVVSPQEFKQ-------GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN- 57

Query: 88  SLIIKHVEFSDQGSYTCEVSN-GVGEAKSYSIDLSVLAAPYFTVEPEFIN--AAEEETVT 144
           +L I ++  SD+G Y CE      GE     I + V   P  ++  +  N  A   E +T
Sbjct: 58  NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 117

Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--RITIENLRKSDTGNYGCNATNS 202
           F C+ASG PEP I W  NGK I     N +  +  +   +T+ N+  SD G Y C ATN 
Sbjct: 118 FSCRASGSPEPAISWFRNGKLI---EENEKYILKGSNTELTVRNIINSDGGPYVCRATNK 174

Query: 203 LGYVYKDVYVNVLA 216
            G   K  ++ V  
Sbjct: 175 AGEDEKQAFLQVFV 188

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 76.4 bits (188), Expect = 4e-16
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
             +     E + G+ A   C   S P    ++ WL  +E +   S+ RF    + +L + 
Sbjct: 5   FREVVSPQEFKQGEDAEVVCRVSSSP--APAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62

Query: 370 KSSELDSGQYTCRAQTEL--DFIEAQATLTVQVP 401
             ++ D G Y C  + E   +       + V VP
Sbjct: 63  NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP 96

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  193 bits (491), Expect = 3e-57
 Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 12/204 (5%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP--RRKVGPN- 180
             P     P  +  ++ E  T  CKA G P P I W   G+ +     +P   R + P+ 
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67

Query: 181 -----RITIENLRKSDTGNYGCNATNSLGY-VYKDVYVNVLAHAPEITEAPKDEYTVDGK 234
                RI      + D G Y C A N LG  V  D  + V     +  + P D     G+
Sbjct: 68  SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGE 127

Query: 235 TVVLTCRV-FGAPKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
             V+ C+   G P+P ++W  +   L        +  G L IT    +D+G+Y C   N 
Sbjct: 128 PAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNM 187

Query: 293 LGTAQGS-GSLTVKEHTHITDQPE 315
           +G  +     LTV E         
Sbjct: 188 VGERESEVAELTVLERPSFVKAAA 211

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  151 bits (383), Expect = 4e-42
 Identities = 51/214 (23%), Positives = 79/214 (36%), Gaps = 22/214 (10%)

Query: 212 VNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL------TGGRYT 265
           +      P I E P D     G+   L C+  G P P + W    + +            
Sbjct: 3   LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62

Query: 266 ILETGDLKITDVAFA-----DSGEYTCFARNKLGTAQG-SGSLTVKEHT-HITDQPEDYE 318
           +L +G L    +        D G Y C ARN LG A     SL V          P D  
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVM 122

Query: 319 VEAGQSATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSG 377
           V  G+ A   C      P  + +I W +   P+D   +   +      L +T + + D+G
Sbjct: 123 VAVGEPAVMECQPPRGHP--EPTISWKKDGSPLD--DKDERITIRGGKLMITYTRKSDAG 178

Query: 378 QYTCRAQTELDFIEAQ-ATLTVQVP---LEAPSN 407
           +Y C     +   E++ A LTV      ++A ++
Sbjct: 179 KYVCVGTNMVGERESEVAELTVLERPSFVKAAAH 212

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  144 bits (365), Expect = 1e-39
 Identities = 51/195 (26%), Positives = 71/195 (36%), Gaps = 17/195 (8%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEF--- 96
           +  + +   L C   G P P   W K G  +       + +       SL    +     
Sbjct: 20  IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79

Query: 97  --SDQGSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEEETVTFECKA-SGL 152
              D+G Y C   N +GEA S+   L V      F   P  +  A  E    EC+   G 
Sbjct: 80  SRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGH 139

Query: 153 PEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVY-KDV 210
           PEP I W  +G P+        R      ++ I   RKSD G Y C  TN +G    +  
Sbjct: 140 PEPTISWKKDGSPL---DDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVA 196

Query: 211 YVNVLAHAPEITEAP 225
            + VL   P   +A 
Sbjct: 197 ELTVLE-RPSFVKAA 210

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 84.9 bits (210), Expect = 7e-19
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 44  VALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSY 102
           +    +   + C    G P P   W KDG P++  D       G  L+I +   SD G Y
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG-KLMITYTRKSDAGKY 180

Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
            C  +N VGE +S   +L+VL  P F     
Sbjct: 181 VCVGTNMVGERESEVAELTVLERPSFVKAAA 211

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  192 bits (490), Expect = 6e-57
 Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 17/208 (8%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
            +P     P  +   + E  T  CK  G PEP I W  +G+P+S       R    +   
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67

Query: 181 --RITIENLRKSDTGNYGCNATNSLGY-VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
               T++  ++ D G Y C A N +G  V +   + +     +    PKD     G+T +
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETAL 127

Query: 238 LTC-RVFGAPKPEVNWIHNQKEL---------TGGRYTILETGDLKITDVAFADSGEYTC 287
           L C    G P+P + WI +   L            R  I++ G+L I++V   D G Y C
Sbjct: 128 LECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187

Query: 288 FARNKLGTAQGS-GSLTVKEHTHITDQP 314
            A+N +GT + S   L V+         
Sbjct: 188 IAQNLVGTRESSYAKLIVQVKAAAHHHH 215

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  149 bits (378), Expect = 2e-41
 Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 20/215 (9%)

Query: 211 YVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG----RYTI 266
            +     +P I E P D      +   L C+V G P+P + W  + + ++          
Sbjct: 2   PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61

Query: 267 LETGDLK----ITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKE-HTHITDQPEDYEVE 320
            + G L     +      D GEY C A+N++G A     SL +         +P+D  V 
Sbjct: 62  FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121

Query: 321 AGQSATFRCNAVS-DPSLKLSIVWLRGSEPID------FESEPRFVQSNDYSLTVTKSSE 373
            G++A   C      P  + +++W++   P+D      F +  R    +  +L ++    
Sbjct: 122 KGETALLECGPPKGIP--EPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179

Query: 374 LDSGQYTCRAQTELDFIEAQ-ATLTVQVPLEAPSN 407
           +D G Y C AQ  +   E+  A L VQV   A  +
Sbjct: 180 IDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHH 214

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  145 bits (367), Expect = 7e-40
 Identities = 55/194 (28%), Positives = 81/194 (41%), Gaps = 17/194 (8%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ------GNYGKSLIIKHVEFS 97
           V  +N+   L C   G P P   W KDG P++ +++ S       G       ++  +  
Sbjct: 20  VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79

Query: 98  DQGSYTCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEEETVTFEC-KASGLPEP 155
           D G Y C   N VG+A S    L +      F VEP+    A+ ET   EC    G+PEP
Sbjct: 80  DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP 139

Query: 156 EIHWVHNGKPISQAP-----PNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYK- 208
            + W+ +G P+          + R ++     + I N+   D GNY C A N +G     
Sbjct: 140 TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199

Query: 209 --DVYVNVLAHAPE 220
              + V V A A  
Sbjct: 200 YAKLIVQVKAAAHH 213

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 73.0 bits (179), Expect = 9e-15
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 13/107 (12%)

Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK----- 87
           PK   V + +   L     +      G P P  IW KDGVP++    +S G   +     
Sbjct: 115 PKDTRVAKGETALLECGPPK------GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD 168

Query: 88  --SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
             +L+I +VE  D+G+Y C   N VG  +S    L V          
Sbjct: 169 GGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  190 bits (483), Expect = 4e-55
 Identities = 52/289 (17%), Positives = 88/289 (30%), Gaps = 22/289 (7%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI 184
           AP        +     ETVT  C ++G     + W     P     P          +T 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGST----LTT 55

Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG 244
            N    +TG Y C            +++ V   A       ++   V+G+  VL C +  
Sbjct: 56  RNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITD 115

Query: 245 A-PKPEVNWIHNQKEL--TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGS 301
              K  V+ +            Y         I      DS  Y C      G    S  
Sbjct: 116 PALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVN-GRESTSTG 174

Query: 302 LTVKEHT------HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESE 355
           + +K +        I  +P       G++A   C+A +      +++  RG   ++    
Sbjct: 175 IWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG-FNVILKRGDTKLEIPLN 233

Query: 356 PRF---VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
             F         +L++      D+G Y+C A  ++    A     V   
Sbjct: 234 SDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  188 bits (478), Expect = 2e-54
 Identities = 49/284 (17%), Positives = 89/284 (31%), Gaps = 24/284 (8%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
           V    + V L C+  G+      W     PI+P   +   + G +L  ++  F + G+Y 
Sbjct: 15  VVEPGETVTLRCVSNGSV----EWDG---PISPYWTLDPESPGSTLTTRNATFKNTGTYR 67

Query: 104 CEVSNGVGEAKSYSIDLSVLAAPY-FTVEPEFINAAEEETVTFECKASGL-PEPEIHWVH 161
           C          S +I L V    + + +  + +   E +     C  +    +  +  + 
Sbjct: 68  CTELEDPMAG-STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMR 126

Query: 162 NGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATNS-LGYVYKDVYVNVLA--- 216
            G               P R   I   +  D+  Y C    +        +++ V     
Sbjct: 127 EGGRQV--LRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHP 184

Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQK-------ELTGGRYTILET 269
             P+I   P     + G+   + C    A       +                     + 
Sbjct: 185 EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV 244

Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ 313
             L +  V F D+G Y+C A N +GT   + +  V E  H    
Sbjct: 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHHHH 288

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  132 bits (333), Expect = 2e-34
 Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 10/199 (5%)

Query: 31  HAPKQQYVTRKKEV-ALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKS 88
             P   +    +EV  +  ++  L C+     L  ++   ++G        +   +  + 
Sbjct: 86  KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG 145

Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV----LAAPYFTVEPEFINAAEEETVT 144
            II+  +  D  +Y C+      E+ S  I L V       P   +EP  +     E   
Sbjct: 146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQ 205

Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI----TIENLRKSDTGNYGCNAT 200
             C A+         +  G    + P N   +    +     ++  +   D G Y C A+
Sbjct: 206 IVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVAS 265

Query: 201 NSLGYVYKDVYVNVLAHAP 219
           N +G     +   V+    
Sbjct: 266 NDVGTRTATMNFQVVESHH 284

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  191 bits (486), Expect = 5e-55
 Identities = 56/317 (17%), Positives = 97/317 (30%), Gaps = 45/317 (14%)

Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGNYGKS 88
            K+++    + VALR  +V  +     +P     W K+            R+   +   +
Sbjct: 25  YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--A 82

Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP----YFTVEPEFINAAEEETVT 144
           L +      D G+Y C   N     K  SI+L V         F   P+ +  +    + 
Sbjct: 83  LWLLPALQEDSGTYVCTTRNASYCDKM-SIELRVFENTDAFLPFISYPQILTLSTSGVLV 141

Query: 145 ---FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
                       + +I W  +   + +         G   + + ++   D G Y C  T 
Sbjct: 142 CPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTF 201

Query: 202 SLG----YVYKDVYVNVLAH----APEITEAPKDEYTVDGKTVVLTCRVF---GAPKPEV 250
           +       + + + + +        P I    K      G  + + C+VF   G P   +
Sbjct: 202 AHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTM 261

Query: 251 NWIHNQKELT-----------GGRYTILETGD------LKITDVAFADSG-EYTCFARNK 292
            W                   G R    E  +      L    V   D   ++ C   N 
Sbjct: 262 LWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNT 321

Query: 293 LGTAQGSGSLTVKEHTH 309
           L     +   TVKEH H
Sbjct: 322 LSFQ--TLRTTVKEHHH 336

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  187 bits (476), Expect = 1e-53
 Identities = 51/344 (14%), Positives = 90/344 (26%), Gaps = 53/344 (15%)

Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK-------ASGL 152
             +T + +   G A+S           +     +     E E V   C        AS  
Sbjct: 2   DPFTLQPAAHTGAARS---------CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVS 52

Query: 153 PEPEIHWVHNGKPISQAPPNPRRKVGPN-RITIENLRKSDTGNYGCNATNSLGYVYKDVY 211
           P   + W  N    +       R    +  + +    + D+G Y C   N+       + 
Sbjct: 53  PRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIE 112

Query: 212 VNVLAHAPEITEAPKDEYTVD-GKTVVLTCRVF-----GAPKPEVNWIHNQKELTGG--- 262
           + V  +             +    + VL C             ++ W  +   L      
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEK 172

Query: 263 RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---------HITDQ 313
             ++  T  L + DVA  D+G Y C         Q + + +++             I   
Sbjct: 173 FLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISP 232

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIV--WLRGSEPID-------FESEPRFVQSND- 363
            +      G   T  C         L+ +  W      I+           PR   S + 
Sbjct: 233 LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENN 292

Query: 364 -----YSLTVTKSSELDSG-QYTCRAQTELDFIEAQATLTVQVP 401
                  L     +  D    + C     L         TV+  
Sbjct: 293 ENYIEVPLIFDPVTREDLHMDFKCVVHNTLS--FQTLRTTVKEH 334

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  131 bits (330), Expect = 1e-33
 Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 16/220 (7%)

Query: 218 APEITEAPKDEYTVDGKTVVLTC-------RVFGAPKPEVNWIHNQKELT----GGRYTI 266
                   K E+ ++G+ V L C           +P+  + W  N    T          
Sbjct: 18  CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77

Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE--HTHITDQPEDYEVEAGQS 324
            + G L +      DSG Y C  RN     + S  L V E     +        +    S
Sbjct: 78  AQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTS 137

Query: 325 ATFRCNAVSDP---SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTC 381
               C  +S+       + I W + S  +D ++E          L V   +  D+G Y C
Sbjct: 138 GVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRC 197

Query: 382 RAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVV 421
                 +  +   T ++++ ++     T+  +I   K + 
Sbjct: 198 VLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTIS 237

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  182 bits (462), Expect = 4e-52
 Identities = 45/291 (15%), Positives = 86/291 (29%), Gaps = 24/291 (8%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI- 182
           + P        +      TVT  C  +G     + W         +P       G + I 
Sbjct: 3   SIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPP-----SPHWTLYSDGSSSIL 53

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV 242
           +  N    +TG Y C            +++ V   A       ++    + +  +L C +
Sbjct: 54  STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL 113

Query: 243 FG-APKPEVNWIH--NQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGS 299
                +  V+ +    +  +    Y+        I    F  S +Y C A    G    S
Sbjct: 114 TDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMG-GRKVMS 172

Query: 300 GSLTVKEHT------HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE 353
            S+ +K          +T  P +     G++A   C+A S       +     +  +   
Sbjct: 173 ISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVN-FDVFLQHNNTKLAIP 231

Query: 354 SEPRFVQSN---DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            +  F  +      +L + +     +G Y+C A              V   
Sbjct: 232 QQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  181 bits (461), Expect = 5e-52
 Identities = 53/289 (18%), Positives = 91/289 (31%), Gaps = 26/289 (8%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
           V      V L C+  G+      W     P +P   +        L   +  F + G+Y 
Sbjct: 15  VVKPGATVTLRCVGNGSV----EWDG---PPSPHWTLYSDGSSSILSTNNATFQNTGTYR 67

Query: 104 CEVSNGVGEAKSYSIDLSVLAAPY-FTVEPEFINAAEEETVTFECKASG-LPEPEIHWVH 161
           C          S +I L V      + V  + +   E++     C  +  + E  +  V 
Sbjct: 68  CTEPGDPLGG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVR 126

Query: 162 -NGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATNSLGYVYKDVY----VNVL 215
             G+P+     +      P    TI   +   + +Y C+A      V           V+
Sbjct: 127 VRGRPL---MRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVI 183

Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETGD--- 271
              P +T  P +   + G+   + C         +V   HN  +L   + +         
Sbjct: 184 PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQK 243

Query: 272 ---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDY 317
              L +  V F  +G Y+C A N  G    S    V E    +     +
Sbjct: 244 VLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHHHHHH 292

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  182 bits (463), Expect = 5e-52
 Identities = 56/311 (18%), Positives = 89/311 (28%), Gaps = 48/311 (15%)

Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDG--VPINPSDRISQGNYGKSL 89
            K   V+   E+ +R       C         TI W KD    P++         + + L
Sbjct: 11  EKIILVSSANEIDVRP------CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKL 64

Query: 90  IIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP----YFTVEPEFINAAEEETVTF 145
                +  D G Y C V N     +   I    +       Y                  
Sbjct: 65  WFVPAKVEDSGHYYCVVRNSSYCLRI-KISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123

Query: 146 EC------KASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNA 199
            C      K      P++ W  + KP+     N       +R+ + N+ +   GNY C+A
Sbjct: 124 VCPYMEFFKNENNELPKLQWYKDCKPLL--LDNIHFSGVKDRLIVMNVAEKHRGNYTCHA 181

Query: 200 TNSLG----YVYKDVYVNVLA----HAPEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEV 250
           + +       + + +    L       P I     +   VD G  + L C V G      
Sbjct: 182 SYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA 241

Query: 251 NWIHN----------------QKELTGGRYTILETGDLKITDVAFAD-SGEYTCFARNKL 293
            W  N                  E    +        L I+++        +TCFA+N  
Sbjct: 242 YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTH 301

Query: 294 GTAQGSGSLTV 304
           G       L  
Sbjct: 302 GIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  167 bits (423), Expect = 2e-46
 Identities = 45/306 (14%), Positives = 84/306 (27%), Gaps = 38/306 (12%)

Query: 131 EPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRR-KVGPNRITIENLR 188
           E   + ++  E     C  +       I W  +      +     R      ++     +
Sbjct: 11  EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70

Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVD---GKTVVLTC----- 240
             D+G+Y C   NS   +   +    + + P +    +  +           L C     
Sbjct: 71  VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF 130

Query: 241 -RVFGAPKPEVNWIHNQKELTG-GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQG 298
            +      P++ W  + K L     +       L + +VA    G YTC A       Q 
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY 190

Query: 299 SGSLTVKEHTH----------ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSE 348
             +  ++  T           ++   E  EV+ G      CN            W     
Sbjct: 191 PITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL--SDIAYWKWNGS 248

Query: 349 PIDFESEP-------------RFVQSNDYSLTVTKSSELD-SGQYTCRAQTELDFIEAQA 394
            ID +                +   +    L +++         +TC A+       A  
Sbjct: 249 VIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI 308

Query: 395 TLTVQV 400
            L   V
Sbjct: 309 QLIYPV 314

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  122 bits (306), Expect = 1e-30
 Identities = 45/228 (19%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 7   SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
           S Y +  +I    +    +   N  A  +Q +    +  L    +E F       LP+  
Sbjct: 84  SSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKN-ENNELPKLQ 142

Query: 67  WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK---SYSIDLSVL 123
           W KD  P+   +    G     LI+ +V    +G+YTC  S      +   +  I+   L
Sbjct: 143 WYKDCKPLLLDNIHFSGV-KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL 201

Query: 124 AAPYFTVEPEFINAAEE-------ETVTFECKASGLPEPEIHWVHNGKPISQAPP----- 171
                T  P  ++ A E         +   C  +G      +W  NG  I +  P     
Sbjct: 202 EENKPTR-PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGED 260

Query: 172 --------NPRRKVGPNRITIENLRKSD-TGNYGCNATNSLGYVYKDV 210
                   N RR      + I  +        + C A N+ G     +
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI 308

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  109 bits (273), Expect = 2e-26
 Identities = 29/219 (13%), Positives = 56/219 (25%), Gaps = 21/219 (9%)

Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAP-KPEVNWIHNQKEL----TGGRYTILETGD 271
               I  +  +E        V  C +     K  + W  +  +                 
Sbjct: 10  EEKIILVSSANE------IDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 63

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH----THITDQPEDYEVEAGQSATF 327
           L        DSG Y C  RN     +   S    E+     +        ++        
Sbjct: 64  LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123

Query: 328 RCNAVSDPSLK----LSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
            C  +     +      + W +  +P+  ++           L V   +E   G YTC A
Sbjct: 124 VCPYMEFFKNENNELPKLQWYKDCKPLLLDN--IHFSGVKDRLIVMNVAEKHRGNYTCHA 181

Query: 384 QTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVS 422
                  +   T  ++      +  T   ++      + 
Sbjct: 182 SYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETME 220

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  178 bits (453), Expect = 8e-52
 Identities = 49/203 (24%), Positives = 76/203 (37%), Gaps = 17/203 (8%)

Query: 121 SVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN--PRRKVG 178
           +    P FT  P           +F C+A+G P P+I W   GK +S             
Sbjct: 2   TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61

Query: 179 PNRITIENLR-KSDTGNYGCNATNSLGYVYKDVYVNVLAH------APEITEAPKDEYTV 231
            + + I+ LR   D   Y C A+N++G +     + VL         P I   P+ +   
Sbjct: 62  GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121

Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-------RYTILETGDLKITDVAFADSGE 284
             +T  + C   G P PE+ W  +   +          +      G L+I     +D G+
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181

Query: 285 YTCFARNKLGTAQ-GSGSLTVKE 306
           Y C A N  GT      +L V+ 
Sbjct: 182 YECVATNSAGTRYSAPANLYVRG 204

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  160 bits (407), Expect = 2e-45
 Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 20/208 (9%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD-----L 272
            P  T  P D+  V G      C+  G P+P++ W    K+++  R+ ++E  D     L
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65

Query: 273 KITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKEHTH-------ITDQPEDYEVEAGQS 324
           +I  +    D   Y C A N +G    S  LTV            I   P+   VE  ++
Sbjct: 66  RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125

Query: 325 ATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP----RFVQSNDYSLTVTKSSELDSGQYT 380
           AT  C A  +P     I W +   P+D  +      +    +  +L + +S E D G+Y 
Sbjct: 126 ATMLCAASGNP--DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYE 183

Query: 381 CRAQTELDFIE-AQATLTVQVPLEAPSN 407
           C A         A A L V+       +
Sbjct: 184 CVATNSAGTRYSAPANLYVRGTKHHHHH 211

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  145 bits (367), Expect = 6e-40
 Identities = 56/195 (28%), Positives = 76/195 (38%), Gaps = 19/195 (9%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEF-SDQ 99
             +        C   G P P+ +W+K G  ++             G  L I+ +    D+
Sbjct: 17  TGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDE 76

Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLA-------APYFTVEPEFINAAEEETVTFECKASGL 152
             Y C  SN VGE  S S  L+VL         P   + P+        T T  C ASG 
Sbjct: 77  AIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGN 135

Query: 153 PEPEIHWVHNGKPISQAPPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYK 208
           P+PEI W  +  P+  +  N R K         + IE   +SD G Y C ATNS G  Y 
Sbjct: 136 PDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYS 195

Query: 209 ---DVYVNVLAHAPE 220
              ++YV    H   
Sbjct: 196 APANLYVRGTKHHHH 210

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 74.1 bits (182), Expect = 4e-15
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN 362
           T +     T  P D    +G  A+F C A  DP  +  IVW +  + +        ++ +
Sbjct: 2   TGETPPRFTRTPVDQTGVSGGVASFICQATGDP--RPKIVWNKKGKKVS-NQRFEVIEFD 58

Query: 363 DYSLTVTK----SSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV 413
           D S +V +     +  D   Y C A   +  I     LTV    + P  F  I +
Sbjct: 59  DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDM 113

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  174 bits (443), Expect = 7e-51
 Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 14/177 (7%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKSLIIKHVEFSDQ 99
              + + V+L C   G   P   W KDG  +   D+    +S+ ++   L +K VE SD 
Sbjct: 13  TVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDA 72

Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIH 158
           G Y C+V +G     S  + L+V   P+FTVEP+ +           C+A G PEP  I 
Sbjct: 73  GRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIV 132

Query: 159 WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNV 214
           W      I    P+P          +     + +  + C A N  G    +   V++
Sbjct: 133 WWRGTTKIGGPAPSPS--------VLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  152 bits (386), Expect = 6e-43
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 12/188 (6%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI- 182
           A       P  +  ++ + V   C   G+ EP+I WV +G  +             + I 
Sbjct: 1   AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 183 --TIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLT 239
             +++++ +SD G Y C   +       + V++ V    P  T  PKD          L+
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG-VPFFTVEPKDLAVPPNAPFQLS 119

Query: 240 CRVFGAPKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQ- 297
           C   G P+P  + W          +          +       S  ++C A N  G A  
Sbjct: 120 CEAVGPPEPVTIVWWRG-----TTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASS 174

Query: 298 GSGSLTVK 305
            + ++ ++
Sbjct: 175 RTATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  137 bits (346), Expect = 2e-37
 Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 17/190 (8%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILE----TGD 271
             ++  AP       G+ V L C V G  +P++ W+ +   +      Y  +      G 
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQ-GSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
           L +  V  +D+G Y C   +   T       LTV+     T +P+D  V         C 
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121

Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
           AV  P   ++IVW RG+  I                 +  +    S  ++C A       
Sbjct: 122 AVGPPE-PVTIVWWRGTTKIG--------GPAPSPSVLNVTGVTQSTMFSCEAHNLKGLA 172

Query: 391 EAQ-ATLTVQ 399
            ++ AT+ +Q
Sbjct: 173 SSRTATVHLQ 182

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  174 bits (443), Expect = 1e-50
 Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 16/194 (8%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN---- 180
           AP    E + +     E     C+  G P P+I W   GK +     + + K+  +    
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL---IQSRKYKMSSDGRTH 63

Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE---APKDEYTVDGKTVV 237
            +T+    + D G Y C ATN +G V     + + A  P+        +  Y   G T+ 
Sbjct: 64  TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA-TPQFHPGYPLKEKYYGAVGSTLR 122

Query: 238 LTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKITDVAF-ADSGEYTCFARNK 292
           L     G P P + W H QK L      TI  T     L + +V     +G+Y     N 
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182

Query: 293 LGTAQGSGSLTVKE 306
            GT      + +++
Sbjct: 183 FGTVDAILDVEIQD 196

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  156 bits (395), Expect = 7e-44
 Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 14/181 (7%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
                +  +L C   G PLP   W + G  +  S +  +S      +L +   E  D+G 
Sbjct: 18  TTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGV 77

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVE---PEFINAAEEETVTFECKASGLPEPEIH 158
           YTC  +N VGE ++ S  L + A P F       E    A   T+       G P P + 
Sbjct: 78  YTCIATNEVGEVET-SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMT 136

Query: 159 WVHNGKPISQAPPNPRRKVGPN----RITIENL-RKSDTGNYGCNATNSLGYVYKDVYVN 213
           W H  K +     +    +        + ++N+ RK+  G Y    +N  G V   + V 
Sbjct: 137 WFHGQKLL---QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193

Query: 214 V 214
           +
Sbjct: 194 I 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  154 bits (390), Expect = 3e-43
 Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 15/193 (7%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
           AP I +  KD  T  G+   L+C++ G P P++ W    KEL    +Y +   G    L 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ---PEDYEVEAGQSATFRCN 330
           +      D G YTC A N++G  + S  L ++            E Y    G +      
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126

Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSLTVTK-SSELDSGQYTCRAQTE 386
            +  P    ++ W  G + +  ++       N      L +     +  +G+Y  +    
Sbjct: 127 YIGRP--VPAMTWFHGQKLL--QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182

Query: 387 LDFIEAQATLTVQ 399
              ++A   + +Q
Sbjct: 183 FGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 76.3 bits (188), Expect = 4e-16
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
            I  + +D   + G++A   C  V  P     I W R  + +      ++  S+D   ++
Sbjct: 9   GIRKEMKDVTTKLGEAAQLSCQIVGRP--LPDIKWYRFGKEL--IQSRKYKMSSDGRTHT 64

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKK 418
           LTV    + D G YTC A  E+  +E  + L +Q   +    + L +      
Sbjct: 65  LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAV 117

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 74.0 bits (182), Expect = 3e-15
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 34  KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLII 91
              Y  ++K        + L  ++ G P+P   W      +  S+   I    +   L++
Sbjct: 104 HPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVM 163

Query: 92  KHVEF-SDQGSYTCEVSNGVGEAKSYSIDLSV 122
           K+V+  +  G Y  ++SN  G   +  +D+ +
Sbjct: 164 KNVQRKTHAGKYKVQLSNVFGTVDA-ILDVEI 194

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  175 bits (445), Expect = 1e-49
 Identities = 53/296 (17%), Positives = 85/296 (28%), Gaps = 39/296 (13%)

Query: 44  VALRNKKVELFCIFGGTPLPQT-----IWSKDGVPIN-------------PSDRI----- 80
                  V L C      +  T      W++ G   +              S R+     
Sbjct: 11  PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAA 70

Query: 81  ----SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN 136
                  N   SL +  +   D+G+YTC        ++S  I L VLA P  T E + + 
Sbjct: 71  RLGAELRNA--SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 128

Query: 137 AAEEETVTFECKA-SGLPEPEIHWVHNGKPI----SQAPPNPRRKVGPNRITIENLRKSD 191
              E      C +  G P  +I W  +   +                 +   +    + D
Sbjct: 129 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVD 188

Query: 192 TGNYGCNATNSLG--YVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP- 248
             N  C   +          V + V            + + +      LTC     P+P 
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT 248

Query: 249 EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
             NW      L    + + +   L I  V    +    C   N LG  Q   ++ V
Sbjct: 249 GYNWSTTMGPLP--PFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  148 bits (374), Expect = 7e-40
 Identities = 48/307 (15%), Positives = 89/307 (28%), Gaps = 43/307 (14%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEP-----EIHWVHNGKPISQA----------PPN 172
               P  +     ++VT  C             ++ W  +G+  S A            +
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 173 PRRKVGPNR---------ITIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNVLAHAPEIT 222
            R +    R         + +  LR  D GNY C   T   G    D+++ VLA  P+ T
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA-KPQNT 121

Query: 223 EAPKDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKELTGGRYTILETGD-------LKI 274
              +          +  C   G  P  ++ W  +   +                     +
Sbjct: 122 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH---THITDQPEDYEVEAGQSATFRCNA 331
              +  D    TC   ++        ++ +  +          ++        AT  C+A
Sbjct: 182 VPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDA 241

Query: 332 VSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
            S+P       W     P+     P F  +    L +    +  +    C     L   +
Sbjct: 242 RSNPEP-TGYNWSTTMGPL-----PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQ 295

Query: 392 AQATLTV 398
           A+ T+ V
Sbjct: 296 AELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 97.5 bits (242), Expect = 2e-22
 Identities = 37/236 (15%), Positives = 66/236 (27%), Gaps = 37/236 (15%)

Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKP-----EVNWIHNQKELT--------------G 261
           + +AP       G +V L C +           ++ W  + +  +               
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 262 GRYTI--------LETGDLKITDVAFADSGEYTC-FARNKLGTAQGSGSLTVKEHTHITD 312
            R           L    L++  +   D G YTC F     G+      L V      T 
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122

Query: 313 QPEDYEVEAGQSATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS----LT 367
           + +  ++        RC +    P     I W      +   S+     S   +      
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRP--PAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180

Query: 368 VTKSSELDSGQYTCRAQ--TELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVV 421
           +  SS++D    TC+ +  +          LTV  P E   +         +    
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEAT 236

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  172 bits (437), Expect = 1e-49
 Identities = 41/225 (18%), Positives = 68/225 (30%), Gaps = 28/225 (12%)

Query: 114 KSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP 173
             +     V      TV PE       + V   C+A+G P  +  W    K I       
Sbjct: 7   HHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--- 63

Query: 174 RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLA--------------HA 218
                 + +    +   D G Y C   N+  + + +   ++V                  
Sbjct: 64  -----TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK 118

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVA 278
            +I   P  +  + G T+VL C   G+P P   W  N+  LT             +  V 
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----TKKLYMVPYVD 173

Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQ 323
               G Y C   N   +        + +  +    P++ E    Q
Sbjct: 174 LEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  150 bits (381), Expect = 7e-42
 Identities = 42/204 (20%), Positives = 56/204 (27%), Gaps = 30/204 (14%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
             L  + V+L C   G P  Q  W K    I   +          LI   V   D G Y 
Sbjct: 29  AVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------TSELIFNAVHVKDAGFYV 81

Query: 104 CEVSNGVGEAKSYSIDLSVLAAP---------------YFTVEPEFINAAEEETVTFECK 148
           C V+N      S    L V   P                  VEP         T+  +C 
Sbjct: 82  CRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCV 141

Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK 208
           A G P P   W  N  P++                +  +     G Y C+  N       
Sbjct: 142 AVGSPIPHYQWFKNELPLTHE--------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS 193

Query: 209 DVYVNVLAHAPEITEAPKDEYTVD 232
                ++     +      E T D
Sbjct: 194 KKVEIIIDELNNLGHPDNKEQTTD 217

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  139 bits (352), Expect = 7e-38
 Identities = 42/230 (18%), Positives = 69/230 (30%), Gaps = 36/230 (15%)

Query: 203 LGYVYKDVYVNVL--AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT 260
           +G  +   + +        +IT  P+ +  + G+ V L CR  G P  +  W    KE+ 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP 60

Query: 261 GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTA-QGSGSLTVKEHTH---------- 309
            G      T +L    V   D+G Y C   N           L V +             
Sbjct: 61  NGN-----TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVS 115

Query: 310 -----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY 364
                I  +P   ++  G +   +C AV  P       W +   P+              
Sbjct: 116 ESKLQICVEPTSQKLMPGSTLVLQCVAVGSP--IPHYQWFKNELPLT--------HETKK 165

Query: 365 SLTVTKSSELDSGQYTCRAQTELDFIEAQA-TLTVQVP--LEAPSNFTLI 411
              V        G Y C    + D  +++   + +     L  P N    
Sbjct: 166 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQT 215

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  175 bits (444), Expect = 4e-49
 Identities = 60/333 (18%), Positives = 105/333 (31%), Gaps = 37/333 (11%)

Query: 20  IATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI----WSKDGVPIN 75
           +A+     Q    P Q               V L C F        I    W K      
Sbjct: 1   MASMTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSK 60

Query: 76  PSDRISQGNYGK--------------------SLIIKHVEFSDQGSYTCEVSNGVGEAKS 115
            +  I   + G                     ++ +  +E  D+G Y CE +      + 
Sbjct: 61  QNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE 120

Query: 116 YSIDLSVLAAPYFTVEPEFI-----NAAEEETVTFECKAS-GLPEPEIHWVHNGKPI--S 167
             ++L+V+A P   +E            +++ +   C ++ G P   + W    K     
Sbjct: 121 SQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY 180

Query: 168 QAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPK 226
           Q   NP   V   +R  +   R++   +  C     +    + + +NV  + PE+T    
Sbjct: 181 QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ-YEPEVTIEGF 239

Query: 227 DEYTV-DGKTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
           D         V LTC+    P   E +W      L  G              + ++ +G 
Sbjct: 240 DGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-VEAQNRTLFFKGPINYSLAGT 298

Query: 285 YTCFARNKLGTAQGSGSLTVKEHTHITDQPEDY 317
           Y C A N +GT  G   + + E   +      +
Sbjct: 299 YICEATNPIGTRSGQVEVNITEAAALEHHHHHH 331

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  135 bits (341), Expect = 4e-35
 Identities = 44/312 (14%), Positives = 78/312 (25%), Gaps = 41/312 (13%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE----IHWVHNGKPISQAPPNPRRKVGPNR 181
                  + +       V   C  +          + W  +     Q        +G + 
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74

Query: 182 -------------------ITIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNVLAHAPEI 221
                              I +  L   D G Y C   T   G     + + V+A     
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134

Query: 222 TEAPKDEYTV----DGKTVVLTCRV-FGAPKPEVNWIHN------QKELTGGRYTILETG 270
            E  +         D K +V TC    G P   V+W          +E+     T+    
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194

Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYE-VEAGQSATFRC 329
             ++     A      C     +   + S +L V+    +T +  D             C
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTC 254

Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
            A ++P       W   +  +           N         +   +G Y C A   +  
Sbjct: 255 KADANPPA-TEYHWTTLNGSL----PKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGT 309

Query: 390 IEAQATLTVQVP 401
              Q  + +   
Sbjct: 310 RSGQVEVNITEA 321

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  169 bits (430), Expect = 1e-48
 Identities = 45/205 (21%), Positives = 73/205 (35%), Gaps = 22/205 (10%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ---------APPNP 173
           + +         +   E   V   C  SG   P + W  +    ++         A    
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 174 RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA-PEITEAPKDEYTVD 232
           R    P  IT +++ + DTG Y C  +   G  Y +V V ++    P             
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121

Query: 233 GKTVVLTCRV-FGAPKPEVNWIHNQKELT-----------GGRYTILETGDLKITDVAFA 280
           G   VLTC    G+P  E  W  +   +                    TG+L    ++ +
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181

Query: 281 DSGEYTCFARNKLGTAQGSGSLTVK 305
           D+GEY+C ARN  GT   S ++ ++
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  144 bits (365), Expect = 8e-40
 Identities = 44/197 (22%), Positives = 60/197 (30%), Gaps = 22/197 (11%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG----------NYGKSLIIKH 93
               N  V+L C + G   P+  W  D          +                 +  K 
Sbjct: 15  RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74

Query: 94  VEFSDQGSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS-G 151
           V   D G+YTC VS   G +     + L VL  P         +A         C    G
Sbjct: 75  VTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDG 134

Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPNRI--------TIENLRKSDTGNYGCNATNSL 203
            P  E  W  +G  +   P + R     + +          + L  SDTG Y C A N  
Sbjct: 135 SPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY 194

Query: 204 GYVYKDVYVNVLAHAPE 220
           G       V +   A E
Sbjct: 195 GTPMTSNAVRM--EAVE 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  137 bits (347), Expect = 3e-37
 Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 25/206 (12%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT------------GGRYT 265
           +  +  +  +    +   V L+C   G   P V W  +Q + T                 
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGS--LTVKEHTHITDQPEDYEVEAGQ 323
                 +    V   D+G YTC    + G + G     L V                 G 
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGN 123

Query: 324 SATFRCNAVS-DPSLKLSIVWLRGSEPID--------FESEPRFVQSNDYSLTVTKSSEL 374
            A   C+     P       W +    +         F +    +      L     S  
Sbjct: 124 RAVLTCSEQDGSP--PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181

Query: 375 DSGQYTCRAQTELDFIEAQATLTVQV 400
           D+G+Y+C A+           + ++ 
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCI-FGGTPLPQTIWSKDGVPINPSDRISQGNYGKS- 88
             P  +        A    +  L C    G+P  +  W KDG+ +  + + ++     S 
Sbjct: 105 LVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164

Query: 89  --------LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
                   L+   +  SD G Y+CE  NG G   + S  + +
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMT-SNAVRM 205

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  179 bits (455), Expect = 9e-48
 Identities = 86/635 (13%), Positives = 171/635 (26%), Gaps = 54/635 (8%)

Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
            +    K +  P     W  +G P                + I     +         T+
Sbjct: 93  LLNVYVKVNNGPLGNPIWNISGDPTRT--------WNRAELAISTFWPNFYQVIFEVITS 144

Query: 202 SLGYVYKDVYVNVLAHAPEIT---EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE 258
                     V VL H    T      ++     G+     C   G             +
Sbjct: 145 GHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGID 204

Query: 259 LTGGRYTILE-------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT 311
           +       ++            + +    D+G+Y C  R + G    + +  V +   + 
Sbjct: 205 VRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVP 264

Query: 312 DQPEDYEVEAGQSATFR--CNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
             P             +   N+++     ++      +    +         +  S  + 
Sbjct: 265 IAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDR---QPVDSTSYKIG 321

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQV------PLEAPSNFTLIQVIDAKKAVVSW 423
                   + +       +         ++       P+  P     +  + +++  + W
Sbjct: 322 HLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLE-VVEVKSRQITIRW 380

Query: 424 NPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTE--VDKFVPASKNFARVL 481
            P      R H     V    +  G+  +RE +    E++  +  +    P +    +++
Sbjct: 381 EPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLI 440

Query: 482 AFNGAYNGPPSEIISFVTPEGVPGTV-QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIK 540
             N        E+I   T E +PG V              +L+W +P Q  GV+  Y+I 
Sbjct: 441 LMNPEGRKESQELI-VQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEIT 499

Query: 541 YQSVKGTK--VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF 598
           Y++V      +    +          T     GL P T Y   +   T  G G  +   F
Sbjct: 500 YKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQF 559

Query: 599 Y----VPFKNPDNVEGR-GSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQD 653
                 P      +E     T N + +     P     AP   Y+I              
Sbjct: 560 TTKISAPSMPAYELETPLNQTDNTVTVMLK--PAHSRGAPVSVYQIVVEEERPRRTKKTT 617

Query: 654 DVLDWRQSEL--VLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVP 711
           ++L      +    A+    Q Y           D   + +   +  G++ T       P
Sbjct: 618 EILKCYPVPIHFQNASLLNSQYY----FAAEFPADSLQAAQPFTI--GDNKTYNGYWNTP 671

Query: 712 ASKN---FARVLAFNGAYNGPPSEIISFVTPEGGT 743
                       A + A      + +   T    T
Sbjct: 672 LLPYKSYRIYFQAASRANGETKIDCVQVATKGAAT 706

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  169 bits (430), Expect = 2e-44
 Identities = 71/529 (13%), Positives = 141/529 (26%), Gaps = 65/529 (12%)

Query: 228 EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
           +       + +  +V   P     W      ++G         +L I+            
Sbjct: 86  KSNSPPGLLNVYVKVNNGPLGNPIW-----NISGDPTRTWNRAELAISTFWPNFYQVIFE 140

Query: 288 FARNKLGTAQGSGSLTVKEHTHITD----QPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
              +          + V  H         + ++ EV AGQ ATF+C+A+        +  
Sbjct: 141 VITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWL 200

Query: 344 LR--GSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
                 +    E +    +    S  V  +++ D+G+Y C  +TE     +     V   
Sbjct: 201 QGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE 260

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
              P     +  + A    +  N  S     G     +V+  T                +
Sbjct: 261 PPVPIAPPQLASVGATYLWIQLNANSING-DGPIVAREVEYCTASGSWND-----RQPVD 314

Query: 462 STTTEVDKFVPASKNFARVLAFN--GAYNGPPSEIISFVTPEGVP-GTVQSLEAIPLGSS 518
           ST+ ++    P ++    VL         G P   +   T    P    + LE + + S 
Sbjct: 315 STSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSR 374

Query: 519 AFYLKWVKPEQP--NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 576
              ++W                + Y    G +   + E + + ++ +     +  L P T
Sbjct: 375 QITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQ-EQVREEVSWDTENSHPQHTITNLSPYT 433

Query: 577 KYRIHLAGYTKAGDGAESKYLFY----VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNA 632
              + L      G     + +      +P   P       +    + + W      +   
Sbjct: 434 NVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWR--EPTQTYG 491

Query: 633 PHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIR 692
               Y I ++  ++ +          R                                 
Sbjct: 492 VITLYEITYKAVSSFDPEIDLSNQSGR--------------------------------- 518

Query: 693 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
             +   G  T        P +     + A      GPP+    F T   
Sbjct: 519 --VSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFTTKIS 564

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  164 bits (417), Expect = 8e-43
 Identities = 83/613 (13%), Positives = 146/613 (23%), Gaps = 81/613 (13%)

Query: 53  LFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE 112
           ++      PL   IW+  G   +P+   ++      L I     +        +++G   
Sbjct: 96  VYVKVNNGPLGNPIWNISG---DPTRTWNRA----ELAISTFWPNFYQVIFEVITSGHQ- 147

Query: 113 AKSYSIDLSVLAAPYFT-----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS 167
               +ID   +     T     +  + +     +  TF+C A G           G  + 
Sbjct: 148 -GYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVR 206

Query: 168 QAPPNPRRKVGPNRI----TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE 223
            AP    +     R      + N  K D G Y C      G    +    V+   P    
Sbjct: 207 DAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIA 266

Query: 224 APK-DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADS 282
            P+          + L         P V         +G                     
Sbjct: 267 PPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPD 326

Query: 283 GEYT--CFARNKLGTAQGSGSLTVKEHTHITD---QPEDYEVEAGQSATFR-------CN 330
            EY              GS    ++  T   D    P   EV   +S            N
Sbjct: 327 TEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYN 386

Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
                S  L++ +       +   E     + +     T ++       + +        
Sbjct: 387 VTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEG 446

Query: 391 EAQ-ATLTVQVPLEAPS---NFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEK 446
             +   L VQ   + P      ++      +K  + W    P    G    Y++      
Sbjct: 447 RKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWRE--PTQTYGVITLYEITYKAVS 504

Query: 447 DGEGSI-----RELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
             +  I        +   G  T        P +     + A      GPP+    F T  
Sbjct: 505 SFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFTTKI 563

Query: 502 GVPGTVQSLEAIPLGSSA--FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
             P         PL  +     +           +  Y+I  +  +  +     E L   
Sbjct: 564 SAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCY 623

Query: 560 SDPTTTSAKL------------------------------------AGLEPSTKYRIHLA 583
             P                                             L P   YRI+  
Sbjct: 624 PVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQ 683

Query: 584 GYTKAGDGAESKY 596
             ++A    +   
Sbjct: 684 AASRANGETKIDC 696

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 61.3 bits (148), Expect = 8e-10
 Identities = 83/617 (13%), Positives = 147/617 (23%), Gaps = 111/617 (17%)

Query: 17  LNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG----- 71
           + V+    + + +    +   V          +     C   G  +        G     
Sbjct: 155 VKVLGHPCTRTPHFLRIQNVEVNA-------GQFATFQCSAIGRTVAGDRLWLQGIDVRD 207

Query: 72  VPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVE 131
            P+      S   +  S  + +    D G Y C +    G   S   +L V   P     
Sbjct: 208 APLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAP 267

Query: 132 PEFINAAEEE-TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS 190
           P+  +       +     +     P +         S    N R+ V      I +L   
Sbjct: 268 PQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASG-SWNDRQPVDSTSYKIGHLDPD 326

Query: 191 DTGNYGCNATNSLGYVY----KDVYVNVLAHAP---------------EIT---EAPKDE 228
                    T             +        P               +IT   E     
Sbjct: 327 TEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYN 386

Query: 229 YT-VDGKTVVLTCRVFGAPKPEVNW-IHNQKELTGGRYTILETGDLKITDVAFADSGEYT 286
            T      + +        + +V   +    E +  ++TI  T     T+V+        
Sbjct: 387 VTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTI--TNLSPYTNVSV------K 438

Query: 287 CFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS------ 340
               N  G  +   S  +   T      ED              +  +  + L       
Sbjct: 439 LILMNPEGRKE---SQELIVQT-----DEDLPGAVPTE--SIQGSTFEEKIFLQWREPTQ 488

Query: 341 ---------IVWLRGSE-----PIDFESEPRFVQSNDYSLTVTKSSELDSG-QYTCR--A 383
                    I +   S       +  +S       N+          L  G  Y+    A
Sbjct: 489 TYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFF---GLYPGTTYSFTIRA 545

Query: 384 QTEL---DFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKV 440
            T          Q T  +  P                   V   P    S       Y++
Sbjct: 546 STAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKP--AHSRGAPVSVYQI 603

Query: 441 QTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 500
               E+                 TTE+ K  P   +F      N  Y         +   
Sbjct: 604 VVEEERPRR-----------TKKTTEILKCYPVPIHFQNASLLNSQY---------YFAA 643

Query: 501 EGVPGTVQSLEAIPLGSSAFYLK-WVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
           E    ++Q+ +   +G +  Y   W  P  P      Y+I +Q+         ++ +   
Sbjct: 644 EFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYK---SYRIYFQAASRANGETKIDCVQVA 700

Query: 560 SDPTTTSAKLAGLEPST 576
           +    T   +   E  T
Sbjct: 701 TKGAATPKPVPEPEKQT 717

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  164 bits (418), Expect = 3e-47
 Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 14/190 (7%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLP-EPEIHWVH-NGKPISQAPPNPRRKVGPN--- 180
               + P     +  E+  F C+ +G   + +I W   NG+ +S  P   R  V  N   
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS--PNQQRISVVWNDDD 60

Query: 181 --RITIENLRKSDTGNYGCNATNSLGYVYK-DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
              +TI N    D G Y C  T   G   +  V V +         AP  +   +G+  V
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAV 119

Query: 238 LTCRVFGAPKPEVNWIHNQKEL---TGGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
           + C V  +  P + W H  +++      R+ +L    L+I  +   D G Y C  R    
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 295 TAQGSGSLTV 304
                  + V
Sbjct: 180 GEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  159 bits (404), Expect = 2e-45
 Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 11/191 (5%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVNWIHNQKEL---TGGRYTIL----ETG 270
            ++   P       G++    C+V G  K  +++W     E       R +++    ++ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQ-GSGSLTVKEHTHITDQPEDYEVEAGQSATFRC 329
            L I +    D+G Y C    + GT    + ++ + +     + P   E + G+ A   C
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122

Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF 389
           + VS      +I+W      +  + + RF+  ++  L +    + D G Y C  +     
Sbjct: 123 DVVSSL--PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180

Query: 390 IEAQATLTVQV 400
                 + V V
Sbjct: 181 EINFKDIQVIV 191

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  159 bits (404), Expect = 2e-45
 Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 10/180 (5%)

Query: 44  VALRNKKVELFCIFGGTPLPQTI-WSK-DGVPINPSDR----ISQGNYGKSLIIKHVEFS 97
                +     C   G    + I W   +G  ++P+ +    +   +   +L I +    
Sbjct: 13  EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72

Query: 98  DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
           D G Y C V+   G     ++++ +     F   P      E E     C       P I
Sbjct: 73  DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132

Query: 158 HWVHNGKPISQAPPNPRRKVGPNR-ITIENLRKSDTGNYGCNATNSLG--YVYKDVYVNV 214
            W H G+ +     + R  V  N  + I  ++K+D G Y C           +KD+ V V
Sbjct: 133 IWKHKGRDV-ILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score =  164 bits (416), Expect = 2e-46
 Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 9/196 (4%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
            + L AP N    +   ++K   +W P S     G   GY+V+ W + D E     L   
Sbjct: 3   HMDLGAPQNPN-AKAAGSRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLLDSK 56

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSS 518
                + E+    P      +V A+     GP S ++S  T + VP     L    + S+
Sbjct: 57  ---VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSST 113

Query: 519 AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY 578
              L W +P + NG +  Y++ Y  V          +   + +P      +  L  S  Y
Sbjct: 114 VTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPY 173

Query: 579 RIHLAGYTKAGDGAES 594
           R  +     AG G E 
Sbjct: 174 RYTVKARNGAGWGPER 189

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 84.1 bits (208), Expect = 2e-18
 Identities = 47/207 (22%), Positives = 73/207 (35%), Gaps = 24/207 (11%)

Query: 501 EGVP-GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
             +  G  Q+  A   GS   +  W     P+G  MGY++KY     +      E   ++
Sbjct: 2   SHMDLGAPQNPNAKAAGSRKIHFNW---LPPSGKPMGYRVKYWIQGDS------ESEAHL 52

Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF-----YVPFKNPDNVEGRGST 614
            D    S +L  L P   Y + +  Y   G+G  S  +       VP   P  +     +
Sbjct: 53  LDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVVS 111

Query: 615 PNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEA----WNQDDVLDWRQSELVLANQPT 670
                +SW   P  E N     Y + +   N          +  V + +   L++ N   
Sbjct: 112 STVTQLSWAE-PA-ETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRE 169

Query: 671 FQPYEIKVVQTWTEKDGEGSIRELIVN 697
            QPY    V+      G G  RE I+N
Sbjct: 170 SQPYRYT-VKARNGA-GWGPEREAIIN 194

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 16/142 (11%), Positives = 33/142 (23%), Gaps = 48/142 (33%)

Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
           +    P N   + +    +  +W        +     YR+ +      E           
Sbjct: 4   MDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSE----------- 47

Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 719
                                            E  +   +  + E+    P      +V
Sbjct: 48  --------------------------------SEAHLLDSKVPSVELTNLYPYCDYEMKV 75

Query: 720 LAFNGAYNGPPSEIISFVTPEG 741
            A+     GP S ++S  T + 
Sbjct: 76  CAYGAQGEGPYSSLVSCRTHQE 97

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  162 bits (412), Expect = 3e-46
 Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 12/192 (6%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE--IHWVHNGKPISQAPPNPRRKVGPN-RI 182
           P+   E   +   E + +   C        +    W+ N  P+       R     N  +
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL---------AHAPEITEAPKDEYTVDG 233
            I N+  SD GNY C  ++             L          +  +I    KD Y + G
Sbjct: 69  YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128

Query: 234 KTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKL 293
           + V L C   G P P++ W    + +            LKI ++   D G Y C A N  
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIR 188

Query: 294 GTAQGSGSLTVK 305
           G  +    + V+
Sbjct: 189 GKDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  137 bits (347), Expect = 2e-37
 Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 16/186 (8%)

Query: 44  VALRNKKVELFC-IFGGTPLPQTI-WSKDGVPINPS--DRISQGNYGKSLIIKHVEFSDQ 99
                K + L C      P   +  W  +  P+  +   R        +L I +VE SD+
Sbjct: 19  RVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDK 78

Query: 100 GSYTCEVSNGVGEAKSYSIDLSVL---------AAPYFTVEPEFINAAEEETVTFECKAS 150
           G+Y+C VS+       +S  + ++               V+ + + A   + VT EC A 
Sbjct: 79  GNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFAL 138

Query: 151 GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV 210
           G P P+I W    +P+   P           + I N++  D G Y C A N  G      
Sbjct: 139 GNPVPDIRWRKVLEPM---PSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQA 195

Query: 211 YVNVLA 216
            + V A
Sbjct: 196 RIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  128 bits (324), Expect = 3e-34
 Identities = 43/197 (21%), Positives = 69/197 (35%), Gaps = 21/197 (10%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPE--VNWIHNQKELT----GGRYTILETGDL 272
           P   E   +    +GK +VL C        +    W+ N+  +       R+     G+L
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTV----------KEHTHITDQPEDYEVEAG 322
            I +V  +D G Y+CF  +   T                        I  Q +D     G
Sbjct: 69  YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128

Query: 323 QSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCR 382
           Q+ T  C A+ +P     I W +  EP+        + ++   L +      D G Y C 
Sbjct: 129 QNVTLECFALGNP--VPDIRWRKVLEPMPST---AEISTSGAVLKIFNIQLEDEGIYECE 183

Query: 383 AQTELDFIEAQATLTVQ 399
           A+      + QA + VQ
Sbjct: 184 AENIRGKDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 94.2 bits (234), Expect = 4e-22
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 7   SEYKIGNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI 66
           ++      I L  I    +    +  P    V  K   AL  + V L C   G P+P   
Sbjct: 91  TKSVFSKFIPLIPIPERTT----KPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIR 146

Query: 67  WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA 124
           W K   P+  +  IS    G  L I +++  D+G Y CE  N  G+ K     + V A
Sbjct: 147 WRKVLEPMPSTAEIS--TSGAVLKIFNIQLEDEGIYECEAENIRGKDKH-QARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 67.2 bits (164), Expect = 7e-13
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE-SEPRFVQSNDYSLTV 368
             ++  +  V+ G+     C+        LS  WL    P+     + RFV   + +L +
Sbjct: 11  PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYI 70

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
                 D G Y+C   +        +     +P+   + 
Sbjct: 71  ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTT 109

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  166 bits (420), Expect = 5e-46
 Identities = 46/308 (14%), Positives = 88/308 (28%), Gaps = 40/308 (12%)

Query: 32  APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI---------WSKDGVPINPSDRISQ 82
            P   +     ++A   +     C      L             W K G    P +R  +
Sbjct: 28  NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK 87

Query: 83  GNYGKSLIIKHVEFSD-QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
                 L I +   +D    Y C V+   G+     +   +   P    E   +   ++ 
Sbjct: 88  NG---DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKY 144

Query: 142 TVTFECK-ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
            +   C          I W  N + +       +       + I N    D+G Y C   
Sbjct: 145 GIDLYCGILYAKHYNNITWYKNNQELI--IDGTKYSQSGQNLIIHNPELEDSGRYDCYVH 202

Query: 201 NSLGYVYKDVYVNVLA---------HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-- 249
                +  D+ V+            H  ++   PK   T+ G+   +TC           
Sbjct: 203 YDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTI-GEPANITCTAVSTSLLVDD 261

Query: 250 --VNWIHNQKELTGGRYTI---------LETGDLKITDVAFADSGE-YTCFARNKLGTAQ 297
             ++W +    + G  + +         +    L   +V     G  YTC   N      
Sbjct: 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT 321

Query: 298 GSGSLTVK 305
            + ++ ++
Sbjct: 322 LTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  166 bits (420), Expect = 6e-46
 Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 35/332 (10%)

Query: 98  DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG------ 151
           D  +   E  N + +      D   L             AA  E  + +C          
Sbjct: 3   DIENEITEFFNKMRDTLPAK-DSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSH 61

Query: 152 ---LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGN-YGCNATNSLGYVY 207
                +  ++W   GK          R+V    + I N   +D+   Y C  T   G   
Sbjct: 62  RYNDKDNVVNWEKIGKTRRPL----NRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCV 117

Query: 208 KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKEL-TGGRYT 265
           + +  + +   P       +  T D   + L C +        + W  N +EL   G   
Sbjct: 118 QGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY 177

Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV---------KEHTHITDQPED 316
                +L I +    DSG Y C+        +    ++          ++H         
Sbjct: 178 SQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPK 237

Query: 317 YEVEAGQSATFRCNAVSDPSLK--LSIVWLR-GSEPIDFESEPRFVQSNDY-----SLTV 368
             V  G+ A   C AVS   L   + I W       I  +     + ++       +L  
Sbjct: 238 INVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYF 297

Query: 369 TKSSELDSGQ-YTCRAQTELDFIEAQATLTVQ 399
              +E   G  YTCR            T+ ++
Sbjct: 298 ENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  104 bits (259), Expect = 2e-24
 Identities = 31/189 (16%), Positives = 57/189 (30%), Gaps = 15/189 (7%)

Query: 225 PKDEYTVDGKTVVLTCRVFG---------APKPEVNWIHNQKELTGGRYTILETGDLKIT 275
             ++    G+     C                  VNW    K        + + GDL I 
Sbjct: 36  TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV-KNGDLWIA 94

Query: 276 DVAFADSGE-YTCFARNKLG-TAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS 333
           +    DS   Y C    K G   QG     +++      +  +            C  + 
Sbjct: 95  NYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCG-IL 153

Query: 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ 393
                 +I W + ++ +      ++ QS   +L +      DSG+Y C    +   I+  
Sbjct: 154 YAKHYNNITWYKNNQELI-IDGTKYSQSGQ-NLIIHNPELEDSGRYDCYVHYDDVRIKND 211

Query: 394 ATLTVQVPL 402
             ++    L
Sbjct: 212 IVVSRCKIL 220

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  164 bits (417), Expect = 5e-46
 Identities = 51/284 (17%), Positives = 82/284 (28%), Gaps = 35/284 (12%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ-GNYGKSLIIKHVEFSDQGSYTCEVSNG 109
             L C  G  P+   +W +           +Q G +   L + ++   D G Y C  ++ 
Sbjct: 18  FVLTCS-GSAPV---VWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDS 73

Query: 110 VGEAKSYSIDLSVLAAPYF------TVEPEFINAAEEETVTFECKASGLPEPEIHWVH-N 162
            G        L +              E  FI   E   +T  C+ +  P+  +      
Sbjct: 74  RGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKK 132

Query: 163 GKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY--VNVLAHAPE 220
           G      P + +R               +  +Y C  T     V  D Y    +   +  
Sbjct: 133 GDVALPVPYDHQRGF---------SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSIN 183

Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT---------GGRYTILETGD 271
           ++          G+ + L C V G       W + +KE                      
Sbjct: 184 VSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSI 243

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSL--TVKEHTHITDQ 313
           L I      DSG YTC     +   Q   ++  TV E  H    
Sbjct: 244 LHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHHH 287

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  144 bits (365), Expect = 7e-39
 Identities = 43/273 (15%), Positives = 81/273 (29%), Gaps = 23/273 (8%)

Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
            T    C  S      + W    +   Q     +     + +T+ NL   DTG Y C   
Sbjct: 16  STFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHN 71

Query: 201 NSLGYVYKD---VYVNVLAHAPEITEAPKDE---YTVDGKTVVLTCRVFGAPKPEVNWIH 254
           +S G    +   +Y+ V            +E   +  +   + + CRV   P+  V    
Sbjct: 72  DSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHE 130

Query: 255 NQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---HIT 311
                  G   +    D +       +   Y C                 +      +++
Sbjct: 131 K-----KGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVS 185

Query: 312 DQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY----SLT 367
                  V  G++ T  C  + +  +     + R       E    F+    Y     L 
Sbjct: 186 VNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILH 245

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
           +  +   DSG YTC     ++  + +  + + V
Sbjct: 246 IPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 85.5 bits (211), Expect = 2e-18
 Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 26/193 (13%)

Query: 225 PKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE---TGDLKITDVAFA 280
           P  E  ++   T VLTC         V W    +E         +   +  L +T++   
Sbjct: 6   PGPELVLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGL 61

Query: 281 DSGEYTCFARNKLGTAQGSGS---LTVKE----HTHITDQPEDYEVEAGQSATFRCNAVS 333
           D+GEY C   +  G          + V +          +     +      T  C  V+
Sbjct: 62  DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCR-VT 120

Query: 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ 393
           DP  +L +        +            D+    +     +   Y C+       +++ 
Sbjct: 121 DP--QLVVTLHEKKGDVALPV------PYDHQRGFSGIF--EDRSYICKTTIGDREVDSD 170

Query: 394 ATLTVQVPLEAPS 406
           A    ++ + + +
Sbjct: 171 AYYVYRLQVSSIN 183

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 19  VIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG----VPI 74
           V +      + + +     V   + V  + + + L CI  G  +    W+         +
Sbjct: 167 VDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV 226

Query: 75  NPSDRISQGNYGK---SLIIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSVLAAPYFTV 130
            P               L I   E  D G+YTC V+  V + +   +I+++V+ + +   
Sbjct: 227 EPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHH 286

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 37/258 (14%), Positives = 80/258 (31%), Gaps = 30/258 (11%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
           +T    +  +    +    C+  +       +VW R S+    E       +    LT+T
Sbjct: 3   VTPPGPELVLNVSSTFVLTCSGSA------PVVWERMSQEPPQEMAKAQDGTFSSVLTLT 56

Query: 370 KSSELDSGQYTCRAQTELDFIEAQ-ATLTVQVP------LEAPSNFTLIQVIDAKKAVVS 422
             + LD+G+Y C           +   L + VP      L   +    I + +  +  + 
Sbjct: 57  NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIP 116

Query: 423 WNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDK-------FVPASK 475
                PQ          V T  EK G+ ++  +  +     +   +         +   +
Sbjct: 117 CRVTDPQ--------LVV-TLHEKKGDVAL-PVPYDHQRGFSGIFEDRSYICKTTIGDRE 166

Query: 476 NFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLM 535
             +             +  ++ V      G   +L  I +G+     +W  P + +G L+
Sbjct: 167 VDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV 226

Query: 536 GYKIKYQSVKGTKVGPLL 553
                +       +  +L
Sbjct: 227 EPVTDFLLDMPYHIRSIL 244

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  160 bits (407), Expect = 1e-45
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 20/186 (10%)

Query: 44  VALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRIS-----------QGNYGKSLII 91
              R     L C +      P+  W +DG  +  +D                     L I
Sbjct: 13  TGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRI 72

Query: 92  KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG 151
             ++ SD G Y C V  G     S    + +   PYF  EPE    A        C+A G
Sbjct: 73  TSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQG 132

Query: 152 LPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD- 209
            PEP ++ W+ +  P++ AP +  ++     + +  L  + T ++ C A N+ G      
Sbjct: 133 PPEPVDLLWLQDAVPLATAPGHGPQRS----LHVPGL--NKTSSFSCEAHNAKGVTTSRT 186

Query: 210 VYVNVL 215
             + VL
Sbjct: 187 ATITVL 192

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  136 bits (345), Expect = 4e-37
 Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 18/193 (9%)

Query: 126 PYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-- 182
             F   P  I  A   T T  C+       PE+HW+ +G+ +  A     +         
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 183 --------TIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDG 233
                    I +L+ SDTG Y C              YV +    P   E P+D      
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-LPYFLEEPEDRTVAAN 121

Query: 234 KTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
               L+C+  G P+P ++ W+ +   L            L +  +    +  ++C A N 
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG-HGPQRSLHVPGL--NKTSSFSCEAHNA 178

Query: 293 LGTAQ-GSGSLTV 304
            G     + ++TV
Sbjct: 179 KGVTTSRTATITV 191

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  130 bits (328), Expect = 6e-35
 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 22/198 (11%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKEL-------------TGGRY 264
                 P +     G T  L C++      PEV+W+ + + L                + 
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKEHTHITDQPEDYEVEAGQ 323
             +    L+IT +  +D+G+Y C       T     G + ++   +  ++PED  V A  
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANT 122

Query: 324 SATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
                C A   P   + ++WL+ + P+              SL V   +   +  ++C A
Sbjct: 123 PFNLSCQAQGPPE-PVDLLWLQDAVPLA----TAPGHGPQRSLHVPGLN--KTSSFSCEA 175

Query: 384 QTELDFIEAQATLTVQVP 401
                   ++      +P
Sbjct: 176 HNAKGVTTSRTATITVLP 193

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 15/119 (12%)

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE----------SE 355
           E +     P +     G + T RC           + WLR  + ++             +
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGE-PPEVHWLRDGQILELADSTQTQVPLGED 59

Query: 356 PRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ-ATLTVQVP---LEAPSNFTL 410
            +        L +T     D+GQY C          +Q   + ++     LE P + T+
Sbjct: 60  EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTV 118

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  160 bits (406), Expect = 1e-45
 Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 18/194 (9%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIH--WVHNGKPISQAPPNPRRKVGPNR 181
             P      E I       VT +C  +      ++  W  NG  ++      R+      
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT----RKNASNME 57

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCR 241
             I   R  D+G Y C   + +     +  + V A AP+IT   + E   +G+  ++ C+
Sbjct: 58  YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA-APDITGHKRSENKNEGQDAMMYCK 115

Query: 242 VFGAPKPEVNWIHNQKELT------GGRYTILETGD---LKITDVAFA-DSGEYTCFARN 291
             G P PE  W   +  +        GR+ I+   +   L I ++    D GEY C A N
Sbjct: 116 SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATN 175

Query: 292 KLGTAQGSGSLTVK 305
            +G+A  S  L V+
Sbjct: 176 SIGSASVSTVLRVR 189

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  158 bits (402), Expect = 4e-45
 Identities = 44/180 (24%), Positives = 65/180 (36%), Gaps = 14/180 (7%)

Query: 44  VALRNKKVELFCIFGGTPLPQT--IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGS 101
           +      V L C    +        W+K+GV +  + + +         I      D G 
Sbjct: 14  IRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM---EYRINKPRAEDSGE 70

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH 161
           Y C V + V   K+ +  + V AAP  T      N  E +     CK+ G P PE  W  
Sbjct: 71  YHC-VYHFVSAPKA-NATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRK 128

Query: 162 NGKPISQAPPNPRRKV------GPNRITIENLR-KSDTGNYGCNATNSLGYVYKDVYVNV 214
               + +   N   +           + I NL+   D G Y CNATNS+G       + V
Sbjct: 129 KENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  144 bits (366), Expect = 5e-40
 Identities = 43/192 (22%), Positives = 64/192 (33%), Gaps = 13/192 (6%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN--WIHNQKELTGGRYTILETGDLKIT 275
            P I  + +         V L C +  +    +   W  N  ELT  R       + +I 
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-NASNMEYRIN 61

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP 335
                DSGEY C   + +   + + ++ VK    IT          GQ A   C +V  P
Sbjct: 62  KPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP 120

Query: 336 SLKLSIVWLRGSEPIDFE---SEPRFVQSND---YSLTVTK-SSELDSGQYTCRAQTELD 388
                 +W +    +  E   S  RF   N      L +       D G+Y C A   + 
Sbjct: 121 --HPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178

Query: 389 FIEAQATLTVQV 400
                  L V+V
Sbjct: 179 SASVSTVLRVRV 190

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 78.4 bits (193), Expect = 7e-17
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
            I    E    ++    T +CN  S     +   W +    +    +     +++    +
Sbjct: 5   RIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK----NASNMEYRI 60

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            K    DSG+Y C     +   +A AT+ V+  
Sbjct: 61  NKPRAEDSGEYHCVY-HFVSAPKANATIEVKAA 92

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 61.8 bits (150), Expect = 4e-11
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 38  VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY-------GKSLI 90
             ++ E     +   ++C   G P P+ +W K    +      S G +          L 
Sbjct: 97  GHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELN 156

Query: 91  IKHVEF-SDQGSYTCEVSNGVGEAKSYSIDLSV 122
           I +++   D G Y C  +N +G A S S  L V
Sbjct: 157 IVNLQITEDPGEYECNATNSIGSA-SVSTVLRV 188

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  162 bits (411), Expect = 2e-45
 Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 32/283 (11%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITI 184
              T++P +++  +EETVT  C+   LP      W  NG     + P+           I
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS---------YRI 52

Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF- 243
            +   +D+G Y C    S       + + +      + +     +T  G+ + L C  + 
Sbjct: 53  TSASVNDSGEYRCQRGLSGRS--DPIQLEIH-RGWLLLQVSSRVFTE-GEPLALRCHAWK 108

Query: 244 GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLT 303
                 V +  N K             +L I     + +G Y C    K        S+T
Sbjct: 109 DKLVYNVLYYRNGKAFKFFH----WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164

Query: 304 VKEHTH--ITDQPEDYEVEAGQSATFRCNAVSDPS---LKLSIVWLRGSEPIDFESEPRF 358
           VKE     + +      +  G   T  C          L+L   +  GS+ +        
Sbjct: 165 VKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG------ 218

Query: 359 VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ-ATLTVQV 400
            ++      +  +   DSG Y C A TE   +  +   L +QV
Sbjct: 219 -RNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  156 bits (395), Expect = 4e-43
 Identities = 52/260 (20%), Positives = 79/260 (30%), Gaps = 26/260 (10%)

Query: 51  VELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
           V L C     P   +  W  +G     S          S  I     +D G Y C+    
Sbjct: 19  VTLHCEVLHLPGSSSTQWFLNGTATQTSTP--------SYRITSASVNDSGEYRCQRGLS 70

Query: 110 VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQ 168
               +S  I L +       ++       E E +   C A        + +  NGK    
Sbjct: 71  ---GRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF 126

Query: 169 APPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV--LAHAPEITEAPK 226
              N       + +TI     S  G Y C+      Y    + V V  L  AP +  A  
Sbjct: 127 FHWN-------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLN-ASV 178

Query: 227 DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG-DLKITDVAFADSGEY 285
               ++G  V L+C      +     ++    +         T  + +I      DSG Y
Sbjct: 179 TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLY 238

Query: 286 TCFARNKLGTAQ-GSGSLTV 304
            C A  + G     S  L +
Sbjct: 239 WCEAATEDGNVLKRSPELEL 258

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  111 bits (280), Expect = 1e-27
 Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 24/192 (12%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKITDV 277
             IT  P        +TV L C V   P      W  N      G  T   T   +IT  
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLN------GTATQTSTPSYRITSA 55

Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSD 334
           +  DSGEY C             S  ++   H   +  Q        G+    RC+A  D
Sbjct: 56  SVNDSGEYRCQRGL------SGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKD 109

Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
             +  ++++ R  +   F          + +LT+ K++   +G Y C    +  +  A  
Sbjct: 110 KLV-YNVLYYRNGKAFKF-------FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161

Query: 395 TLTVQVPLEAPS 406
           ++TV+    AP 
Sbjct: 162 SVTVKELFPAPV 173

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  106 bits (265), Expect = 1e-25
 Identities = 30/189 (15%), Positives = 54/189 (28%), Gaps = 23/189 (12%)

Query: 38  VTRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEF 96
           +     V    + + L C  +    +   ++ ++G                +L I     
Sbjct: 87  LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW------NSNLTILKTNI 140

Query: 97  SDQGSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP 155
           S  G+Y C             S+ +  L               E   VT  C+   L + 
Sbjct: 141 SHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQR 200

Query: 156 EIHWVH-----NGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK-- 208
               ++       K +     +           I   R+ D+G Y C A    G V K  
Sbjct: 201 PGLQLYFSFYMGSKTLRGRNTSS-------EYQILTARREDSGLYWCEAATEDGNVLKRS 253

Query: 209 -DVYVNVLA 216
            ++ + VL 
Sbjct: 254 PELELQVLG 262

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  167 bits (424), Expect = 3e-45
 Identities = 51/392 (13%), Positives = 100/392 (25%), Gaps = 44/392 (11%)

Query: 30  RHAPKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQT--IWSKDGVPINPSDRISQGNYG 86
              P++  +          K + L C + GG P      +  +    +     + +    
Sbjct: 83  YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE-PAE 141

Query: 87  KSLIIKHVEFSDQGSYTCEVSNGVGEA-------KSYSIDLSVLAAPYFTVEPEFINAAE 139
            +  +         +++C     +           S    L     P    +       E
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201

Query: 140 EET-VTFECKASGL---PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNY 195
            +T  T  C   GL    E ++H     + ++                        T   
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 261

Query: 196 GCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN 255
            C              V + +  P            +G  V + C      K  +N +  
Sbjct: 262 TCAVILGNQSQETLQTVTIYSF-PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPA 320

Query: 256 QKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH------ 309
           Q      +        L +      +   ++C A  ++       + T +          
Sbjct: 321 QPLGPRAQ--------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD 372

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
             D P ++        T  C A  +P  +L    L+         E   V  +       
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELK--CLKDGTFPLPIGESVTVTRDL------ 424

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
                  G Y CRA++    +  + T+ V  P
Sbjct: 425 ------EGTYLCRARSTQGEVTREVTVNVLSP 450

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  138 bits (348), Expect = 3e-35
 Identities = 48/394 (12%), Positives = 101/394 (25%), Gaps = 45/394 (11%)

Query: 41  KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG 100
            K +  R   V + C                 P+   + +  GN  K   + +V   +  
Sbjct: 7   SKVILPRGGSVLVTCSTSCDQPMLLGIET---PLPKKELLLPGNNRKVYELSNV--QEDS 61

Query: 101 SYTCEVSNGVGEAKSYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASG---LPEPE 156
              C  +       +    L+V   P    + P        + +T  C+  G        
Sbjct: 62  QPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLT 120

Query: 157 IHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
           +  +   K + + P            T+   R     N+ C     L     +++ N  A
Sbjct: 121 VVLLRGEKELKREPAVGEPAEV--TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178

Query: 217 HAPEITEAP--------KDEYTVDGKTVVLTCRVFG---APKPEVNWIHNQKEL------ 259
                T                       + C + G     + +V+     + L      
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY 238

Query: 260 TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV 319
               ++   +  +   D     +   TC       + +   ++T+             EV
Sbjct: 239 GNDSFSAKASVSVTAED---EGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV 295

Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQY 379
             G   T +C A     + L+   +                     L +  + E +   +
Sbjct: 296 SEGTEVTVKCEAHPRAKVTLN--GVPAQPL-----------GPRAQLLLKATPEDNGRSF 342

Query: 380 TCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQV 413
           +C A  E+         T ++ +           
Sbjct: 343 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDC 376

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  114 bits (285), Expect = 4e-27
 Identities = 37/287 (12%), Positives = 70/287 (24%), Gaps = 20/287 (6%)

Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
           +V P  +      +V   C  S      +         +  P       G NR   E   
Sbjct: 3   SVSPSKVILPRGGSVLVTCSTSCDQPMLLGI------ETPLPKKELLLPGNNRKVYELSN 56

Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG---A 245
             +     C +    G      ++ V      +  AP   +   GK + L C+V G    
Sbjct: 57  VQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR 116

Query: 246 PKPEVNWIHNQKELTGGRYTI-LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
               V  +  +KEL               +          ++C     L           
Sbjct: 117 ANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176

Query: 305 KE---------HTHITDQPEDYEVEAGQSATFRCNAVSD-PSLKLSIVWLRGSEPIDFES 354
                                  +E     T  C+     P  +  +    G + ++   
Sbjct: 177 SAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV 236

Query: 355 EPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
                  +  +     + +  + + TC         E   T+T+   
Sbjct: 237 TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF 283

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 92.6 bits (229), Expect = 5e-20
 Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 7/184 (3%)

Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAF 279
           + + +P       G +V++TC         +     +  L      +             
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGI---ETPLPKKELLLPGNNRKVYELSNV 57

Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEH-THITDQPEDYEVEAGQSATFRCNAV-SDPSL 337
            +  +  C++    G +     LTV      +   P       G++ T RC      P  
Sbjct: 58  QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRA 117

Query: 338 KLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLT 397
            L++V LRG + +    EP   +  + + TV    +     ++CR + +L     +    
Sbjct: 118 NLTVVLLRGEKELK--REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFEN 175

Query: 398 VQVP 401
              P
Sbjct: 176 TSAP 179

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  159 bits (404), Expect = 5e-45
 Identities = 46/203 (22%), Positives = 69/203 (33%), Gaps = 23/203 (11%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPIS--------QAPPNPRRK 176
                    +   E E++   C  SG   P + W    G   +         AP   R  
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA-PEITEAPKDEYTVDGKT 235
              + IT  ++ + D G Y C  +   G  Y +V +++     P             G  
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121

Query: 236 VVLTCRVF-GAPKPEVNWIHNQKELT------------GGRYTILETGDLKITDVAFADS 282
            VLTC    G+P  E +W  +   +                    ++GDL    V   DS
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181

Query: 283 GEYTCFARNKLGTAQGSGSLTVK 305
           GEY C A+N  GTA  S +  + 
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  141 bits (356), Expect = 2e-38
 Identities = 37/199 (18%), Positives = 57/199 (28%), Gaps = 21/199 (10%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK----------SLIIKH 93
               N+ ++L C + G   P+  W             +                 +    
Sbjct: 12  QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSS 71

Query: 94  VEFSDQGSYTCEVSNGVGEAKS-YSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SG 151
           V   D G YTC VS   G+     SI L+VL  P         +          C    G
Sbjct: 72  VTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDG 131

Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPNRI---------TIENLRKSDTGNYGCNATNS 202
            P  E  W  +G  +  A     R    +             + +   D+G Y C A N 
Sbjct: 132 SPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG 191

Query: 203 LGYVYKDVYVNVLAHAPEI 221
            G   +    ++ A    +
Sbjct: 192 YGTAMRSEAAHMDAVELNV 210

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  138 bits (350), Expect = 1e-37
 Identities = 38/207 (18%), Positives = 57/207 (27%), Gaps = 26/207 (12%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG------------GRYTI 266
             +  A  D    + +++ LTC   G   P V W   Q   T                  
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGS--LTVKEHTHITDQPEDYEVEAGQS 324
             +  +  + V   D+GEYTC    + G   G  S  LTV              V  G  
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121

Query: 325 ATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPR---------FVQSNDYSLTVTKSSEL 374
           A   C+     P       W +    +      +          +      L     +  
Sbjct: 122 AVLTCSEHDGSP--PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179

Query: 375 DSGQYTCRAQTELDFIEAQATLTVQVP 401
           DSG+Y C+AQ             +   
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMDAV 206

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  164 bits (415), Expect = 6e-45
 Identities = 58/410 (14%), Positives = 109/410 (26%), Gaps = 98/410 (23%)

Query: 42  KEV--ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK------------ 87
           K+V    +   VEL C        Q  W          ++ S    G             
Sbjct: 1   KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60

Query: 88  -------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEE 140
                   LIIK+++  D  +Y CEV +   E +     L+              +  + 
Sbjct: 61  LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---------NSDTHLLQG 111

Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT 200
           +++T   ++     P +             P  +   G   +++  L   D+G + C   
Sbjct: 112 QSLTLTLESPPGSSPSVQCRS---------PRGKNIQGGKTLSVSQLELQDSGTWTCTVL 162

Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-----GAPKPEVNW--- 252
            +   V   + + VLA       A    Y  +G+ V  +  +           E+ W   
Sbjct: 163 QNQKKVEFKIDIVVLAFQK----ASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAE 218

Query: 253 -----------------IHNQKELTGGRYTILETGDLKIT----DVAFADSGEYTCFARN 291
                            +  ++     +  + +   L +T       +A SG  T     
Sbjct: 219 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA 278

Query: 292 KLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID 351
           K G      +L V   T                    C      S KL +     ++   
Sbjct: 279 KTGKLHQEVNLVVMRAT-------------QLQKNLTCEVWGPTSPKLMLSLKLENKEA- 324

Query: 352 FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
                                  ++G + C      D  +      ++V 
Sbjct: 325 ---------KVSKREKAVWVLNPEAGMWQCLLS---DSGQVLLESNIKVL 362

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  149 bits (376), Expect = 1e-39
 Identities = 46/319 (14%), Positives = 90/319 (28%), Gaps = 60/319 (18%)

Query: 133 EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI---------- 182
           + +   + +TV   C AS     + HW ++ +             GP+++          
Sbjct: 2   KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 61

Query: 183 --------TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGK 234
                    I+NL+  D+  Y C   +    V   V+         +T    D + + G+
Sbjct: 62  WDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVF--------GLTANS-DTHLLQGQ 112

Query: 235 TVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
           ++ LT        P V     + +       I     L ++ +   DSG +TC       
Sbjct: 113 SLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVSQLELQDSGTWTCTVLQNQK 166

Query: 295 TAQGSGSLTVKEHTHITDQPEDYEVEAGQSATF-------------------RCNAVSDP 335
             +    + V               + G+   F                   +    S  
Sbjct: 167 KVEFKIDIVVLAFQKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSS 223

Query: 336 SLKLSIVWLRGSEPI-DFESEPRFVQSNDYSLTVTKSSEL----DSGQYTCRAQTELDFI 390
              ++         +     +P+        L +T    L     SG  T   + +   +
Sbjct: 224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKL 283

Query: 391 EAQATLTVQVPLEAPSNFT 409
             +  L V    +   N T
Sbjct: 284 HQEVNLVVMRATQLQKNLT 302

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  101 bits (252), Expect = 3e-23
 Identities = 38/245 (15%), Positives = 72/245 (29%), Gaps = 47/245 (19%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGG-------------------RYTILETGD-- 271
           G TV LTC        + +W ++ +    G                   R ++ + G+  
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNA 331
           L I ++   DS  Y C   ++           V+          D  +  GQS T    +
Sbjct: 69  LIIKNLKIEDSDTYICEVEDQ--------KEEVQLLVFGLTANSDTHLLQGQSLTLTLES 120

Query: 332 VSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
                   S+                       +L+V++    DSG +TC        +E
Sbjct: 121 PPGS--SPSVQCRSPRGKN---------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE 169

Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
            +  + V    +A S     +    + +        P +          + W + +   S
Sbjct: 170 FKIDIVVLAFQKASSIVYKKEGEQVEFSF-------PLAFTVEKLTGSGELWWQAERASS 222

Query: 452 IRELI 456
            +  I
Sbjct: 223 SKSWI 227

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  157 bits (399), Expect = 2e-44
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 35/199 (17%)

Query: 51  VELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSYTCEVS 107
           ++L+  +       +  WS +G  I  SDR+  G  G+   L I     +D+G Y  E+ 
Sbjct: 20  IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79

Query: 108 NGVGEAKSYSIDLSVLA---------------------APYFTVEPEFINAAEEETVTFE 146
           +G    +  ++DLS  A                     A      P+ +   E + +   
Sbjct: 80  DGKTGHQK-TVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLT 138

Query: 147 CKASGLPEPEIHWVHNGKPISQAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATN 201
           C   G P PE+ W+ N K +          +          TI  +  +D+G YG    N
Sbjct: 139 CNVWGDPPPEVSWLKNEKAL---AQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 195

Query: 202 SLGYVYKDVYVNVLAHAPE 220
             G    D  V+V    PE
Sbjct: 196 KYGSETSDFTVSVF--IPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  143 bits (362), Expect = 3e-39
 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 33/205 (16%)

Query: 132 PEFINAAEEETVTFECK-ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN----RITIEN 186
            +    +  E +         + + +++W HNG  I     + R K G       + I  
Sbjct: 9   TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR---YSDRVKTGVTGEQIWLQINE 65

Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAH--------------------APEITEAPK 226
              +D G Y     +      K V ++  A+                    A  +   P 
Sbjct: 66  PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD 125

Query: 227 DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD----LKITDVAFAD 281
                +GK + LTC V+G P PEV+W+ N+K L       +           I  V+ AD
Sbjct: 126 VVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTAD 185

Query: 282 SGEYTCFARNKLGTAQGSGSLTVKE 306
           SG+Y    +NK G+     +++V  
Sbjct: 186 SGKYGLVVKNKYGSETSDFTVSVFI 210

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  129 bits (325), Expect = 3e-34
 Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 30/197 (15%)

Query: 233 GKTVVLTCRV-FGAPKPEVNWIHNQKELT-GGRYTILETGD---LKITDVAFADSGEYTC 287
            + + L   V +     +VNW HN   +    R     TG+   L+I +    D G+Y  
Sbjct: 17  AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76

Query: 288 FARNKLGTAQGSGSLTVKEHT---------------------HITDQPEDYEVEAGQSAT 326
              +     Q +  L+ + +                       +   P+   ++ G++  
Sbjct: 77  ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136

Query: 327 FRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--YSLTVTKSSELDSGQYTCRAQ 384
             CN   DP     + WL+  + +                  T+   S  DSG+Y    +
Sbjct: 137 LTCNVWGDP--PPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 194

Query: 385 TELDFIEAQATLTVQVP 401
            +     +  T++V +P
Sbjct: 195 NKYGSETSDFTVSVFIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 25  SASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS--- 81
           +A   ++  +              K + L C   G P P+  W K+   +  +D  +   
Sbjct: 109 AAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF 168

Query: 82  QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA 124
           +        I  V  +D G Y   V N  G   S    +SV  
Sbjct: 169 EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS-DFTVSVFI 210

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 10/112 (8%)

Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCN-AVSDPSLKLSIVWLRGSEPIDFESEPRF 358
           GS      T +  Q         +              LK  + W      I +    + 
Sbjct: 1   GSSIALSATDLKIQ------STAEGIQLYSFVTYYVEDLK--VNWSHNGSAIRYSDRVKT 52

Query: 359 VQSND-YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFT 409
             + +   L + + +  D G+Y           +    L+ Q   EA + F 
Sbjct: 53  GVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ 104

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  167 bits (422), Expect = 3e-44
 Identities = 78/422 (18%), Positives = 123/422 (29%), Gaps = 57/422 (13%)

Query: 50  KVELFCIFGGTPLPQTIWSKDGVPINPSDRIS-----QGNYGKSLIIKHVEFSDQGSYTC 104
           K +      G      I S   V  N + RI       G    S++I  +  SD G Y C
Sbjct: 143 KRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLC 202

Query: 105 EVSNGVGEAKSYSIDLSVLAAPYFTVEPEF---------INAAEEETVTFECKASGLPEP 155
           +  +     K  + DL VL      V  +          +         F C+ S     
Sbjct: 203 QAGDDSNSNKK-NADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENC 261

Query: 156 EIHWVHNGKPISQAPP----NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211
           ++     GK           NP+ K G   + I  LRK D G Y C A +          
Sbjct: 262 DVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPI 321

Query: 212 VNVLAHAPE---ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW---------------- 252
                   E   I  +P     V G +V + C         + +                
Sbjct: 322 QAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLV 381

Query: 253 --IHNQKELTGGRYTILETGD-----LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
                 K    GR ++LE        + +  +   D+G Y C         + +  + + 
Sbjct: 382 DSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGD-TLWRTTVEIKII 440

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSD--PSLKLSIVWLRGSEPIDFESE----PRFV 359
           E       P +     G++    C+         K    W           +      FV
Sbjct: 441 EGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFV 500

Query: 360 QSND----YSLTVTKSSELDSGQYTCRAQTELDFIE-AQATLTVQVPLEAPSNFTLIQVI 414
             ++     SLT+   +  D G Y C  +    + E A   + V+    A S    +   
Sbjct: 501 NCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKA 560

Query: 415 DA 416
           DA
Sbjct: 561 DA 562

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  150 bits (380), Expect = 1e-38
 Identities = 72/397 (18%), Positives = 110/397 (27%), Gaps = 65/397 (16%)

Query: 55  CIFGGTPLPQTIWSKDG-VPINPSDRIS----QGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
           C  G      T+ S +G V    + R +      N    + I  +   D G Y C +   
Sbjct: 38  CRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGIN 97

Query: 110 VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFEC--KASGLPEPEIHWVHNGKPIS 167
                S+ + L V   P    + +        TVT  C  K     + +  +   G    
Sbjct: 98  SRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV 156

Query: 168 QAPP--NPRRKVGPNRI--------------TIENLRKSDTGNYGCNATNSLGYVYKDVY 211
                          RI               I  LR SD G Y C A +      K+  
Sbjct: 157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216

Query: 212 VNVL-AHAPEITEAPKDEYTVD-------GKTVVLTCRVFGAPKPEVNWIHNQKEL--TG 261
           + VL      + E  +   T                CR       +V      K      
Sbjct: 217 LQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276

Query: 262 GRYTILETGD-----LKITDVAFADSGEYTCFARNKLGTAQGSGSLT----VKEHTHITD 312
           GR  +          + IT +   D+G Y C A +     +GS        V E + I  
Sbjct: 277 GRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR 336

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--------- 363
            P   +  AG S    C          SI +    E       P  V S           
Sbjct: 337 SPTVVKGVAGSSVAVLCPYNRKE--SKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGR 394

Query: 364 -----------YSLTVTKSSELDSGQYTCRAQTELDF 389
                      +++ + + +  D+G Y C    +  +
Sbjct: 395 LSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  116 bits (291), Expect = 2e-27
 Identities = 57/348 (16%), Positives = 106/348 (30%), Gaps = 59/348 (16%)

Query: 132 PEFINAAEEETVTFECK---ASGLPEPEIHWVHNGKPIS-----------QAPPNPRRKV 177
           PE +N+ E  +V+  C     S       +W   G                +    R  +
Sbjct: 7   PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66

Query: 178 GPNR------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV 231
                     + I  L + D+G Y C    +   +  DV    ++  P +    K     
Sbjct: 67  TNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVS-LEVSQGPGLLNDTKVYTVD 125

Query: 232 DGKTVVLTCRVFGAPKPEVNWIHNQ---------------KELTGGRYTILETGD----- 271
            G+TV + C        +   ++ Q                    GR  +   G      
Sbjct: 126 LGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLF 185

Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE---------DYEVEA 321
            + I  +  +D+G+Y C A +   + + +  L V +        +             E 
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEV 245

Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSLTVTKSSELDSGQ 378
              A F C   S  +  + +V   G     FE        +    +S+ +T   + D+G+
Sbjct: 246 ANVAKFLCRQSSGENCDV-VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGR 304

Query: 379 YTCRAQTELDFIEAQATLT----VQVPLEAPSNFTLIQVIDAKKAVVS 422
           Y C A ++    E          V      P + T+++ +      V 
Sbjct: 305 YLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVL 352

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 60.0 bits (144), Expect = 2e-09
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 22/134 (16%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSD---------RISQGNYGKSLIIKHVEFSDQGS 101
               C F         W+  G    PS             + +   SL +  V  +D+G 
Sbjct: 464 CHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK-ASGLPEPEIHWV 160
           Y C V  G    ++ ++ ++V            ++ A+ +    E    SG  E E    
Sbjct: 524 YWCGVKQGHFYGETAAVYVAVEERK--AAGSRDVSLAKADAAPDEKVLDSGFREIE---- 577

Query: 161 HNGKPISQAPPNPR 174
                 ++A  +PR
Sbjct: 578 ------NKAIQDPR 585

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  155 bits (392), Expect = 1e-42
 Identities = 50/279 (17%), Positives = 87/279 (31%), Gaps = 35/279 (12%)

Query: 48  NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS 107
              + L CI          W+         +     N     I +  E +  G+YTC  S
Sbjct: 27  GDTLSLTCIDPDF----VRWTFKTYFNEMVE-----NKKNEWIQEKAEATRTGTYTCSNS 77

Query: 108 NGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPI 166
           NG+      SI + V       +    +   E+      C  +     +   +  +GK +
Sbjct: 78  NGLTS----SIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSL 133

Query: 167 SQAPPNPRRKVGPNR-ITIENL-RKSDTGNYGCNATNSLGYVYKDVY----VNVLAHAPE 220
              P +      P   ITI+N+ R        C A     +++ D +       +   P 
Sbjct: 134 ---PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPV 190

Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKEL-----------TGGRYTILE 268
           ++          G T  + C +          W+    +              G +    
Sbjct: 191 VSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYER 250

Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
              L I+     DSG + C+A N  G+A  + +L V E 
Sbjct: 251 QETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  149 bits (378), Expect = 1e-40
 Identities = 46/294 (15%), Positives = 91/294 (30%), Gaps = 33/294 (11%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
            + P        +     +T++  C         + W                    N  
Sbjct: 10  PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKK------NEW 59

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV 242
             E    + TG Y C+ +N L      +YV V     ++       +  +    ++ C +
Sbjct: 60  IQEKAEATRTGTYTCSNSNGLT---SSIYVFV-RDPAKLFLVGLPLFGKEDSDALVRCPL 115

Query: 243 FGAPKPEVNWIH--NQKELTGGRYTILETGDLKITDVAFA-DSGEYTCFARNKLGTAQGS 299
                 + + I    +   T   +       + I +V  A       C A+   GT   S
Sbjct: 116 TDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRD-GTWLHS 174

Query: 300 GSLTVKEHT------HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE 353
              T+K          ++     + ++ G + T  C  + D S  ++ +WL+ +      
Sbjct: 175 DKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCT-IKDVSTSVNSMWLKMNPQPQHI 233

Query: 354 SEPR--------FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           ++ +        F      +LT++ +   DSG + C A           TL V 
Sbjct: 234 AQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  119 bits (299), Expect = 5e-30
 Identities = 27/202 (13%), Positives = 47/202 (23%), Gaps = 14/202 (6%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSL 89
             P + ++         +    + C      + Q    + DG  +               
Sbjct: 89  RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGIT 148

Query: 90  IIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA----PYFTVEPEFINAAEEETVTF 145
           I        +    C          S    L V  A    P  +V        + +T T 
Sbjct: 149 IKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTV 208

Query: 146 ECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRI--------TIENLRKSDTGNYG 196
            C    +       W+                              TI + R  D+G + 
Sbjct: 209 VCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFM 268

Query: 197 CNATNSLGYVYKDVYVNVLAHA 218
           C A N+ G       + V+   
Sbjct: 269 CYANNTFGSANVTTTLKVVEKG 290

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 51.7 bits (123), Expect = 4e-07
 Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 15/106 (14%)

Query: 296 AQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESE 355
           +Q S S        I     +  VEAG + +  C           + W   +        
Sbjct: 1   SQPSASPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPD------FVRWTFKTYF------ 48

Query: 356 PRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
              V++        K+    +G YTC     L    +   + V+ P
Sbjct: 49  NEMVENKKNEWIQEKAEATRTGTYTCSNSNGL---TSSIYVFVRDP 91

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  159 bits (403), Expect = 2e-41
 Identities = 87/605 (14%), Positives = 161/605 (26%), Gaps = 77/605 (12%)

Query: 44  VALRNKKVELFCIF-------GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEF 96
           V   +      C+                +W  +   I             S+    +  
Sbjct: 14  VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIA- 72

Query: 97  SDQGSYTCEVSN-GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP 155
           S     TC +   G  E   Y I +     P    +P+ ++    E     C+  G  E 
Sbjct: 73  SLNIQLTCNILTFGQLEQNVYGITIISGLPP---EKPKNLSCIVNEGKKMRCEWDGGRET 129

Query: 156 EI----HWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG-----YV 206
            +               A    +R    +     +            A N+LG     ++
Sbjct: 130 HLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHI 189

Query: 207 YKDVYVNVLAHAPEITEAPKDEYT-----------VDGKTVVLTCRVFGAPKPEVNWIHN 255
             D    V  + P        E                  ++L   +    K    W   
Sbjct: 190 NFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQI 249

Query: 256 QKELTGGRYTILETGDLKITDVAFADSGEYTCF-----ARNKLGTAQGSGSLTVKEHTHI 310
             E T    +     DLK           +T +        + G   G  S   +E + I
Sbjct: 250 PPEDTASTRSSFTVQDLK----------PFTEYVFRIRCMKEDGK--GYWSDWSEEASGI 297

Query: 311 TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEP--------IDFESEPRFVQS- 361
           T +    +  +        +     +++L    L   E         +        +Q+ 
Sbjct: 298 TYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNY 357

Query: 362 --NDYSLTVTKSSELDSGQYTCRAQTEL-DFIEAQATLTVQVPLEAPSNFTLIQVIDAKK 418
             N   LTV  ++  D    T   +  +     A  T+             L        
Sbjct: 358 TVNATKLTVNLTN--DRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNM 415

Query: 419 AVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA 478
             V W     +S++ +   + V +               +     T        +     
Sbjct: 416 LWVEWTT-PRESVKKYILEWCVLSD---KAPCITDWQQEDGTVHRTYLRGNLAESKCYLI 471

Query: 479 RVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMG 536
            V        G P  I ++   +  P    ++    +G +   L+W  +  +  NG +  
Sbjct: 472 TVTPVYADGPGSPESIKAY-LKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRN 530

Query: 537 YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKY 596
           Y I Y+++ G +            D + T   L+ L   T Y + +A YT  G     ++
Sbjct: 531 YTIFYRTIIGNET-------AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEF 583

Query: 597 LFYVP 601
            F  P
Sbjct: 584 TFTTP 588

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  159 bits (402), Expect = 2e-41
 Identities = 71/545 (13%), Positives = 143/545 (26%), Gaps = 88/545 (16%)

Query: 225 PKDEYTVDGKTVVLTCRV-------FGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277
           P+             C +       F      + W  N   +   +YTI+      +T  
Sbjct: 10  PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 69

Query: 278 AF-ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC--NAVSD 334
              + + + TC         Q    +T+       ++P++      +    RC  +   +
Sbjct: 70  DIASLNIQLTCNILTFGQLEQNVYGITIISGL-PPEKPKNLSCIVNEGKKMRCEWDGGRE 128

Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKS-SELDSGQYTCRAQTELDFIEAQ 393
             L+ +    +        ++ +  +    S TV  S     + +    A+  L  + + 
Sbjct: 129 THLETNFTL-KSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSD 187

Query: 394 ---ATLTVQVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTWTEKDGE 449
                   +V    P N ++I   +    + ++W    P         Y +Q  T+    
Sbjct: 188 HINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN--PSIKSVIILKYNIQYRTKDAST 245

Query: 450 GSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---IISFVTPEGVPGT 506
            S           ++  V    P ++   R+        G  S+     S +T E  P  
Sbjct: 246 WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK 305

Query: 507 -----VQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
                 +   +   G     L W  + P + NG ++ Y++     K             +
Sbjct: 306 APSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH-----------L 354

Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV---PFKNPDNVEGRGSTPN 616
            + T  + KL     + +Y   L      G    +            +P          N
Sbjct: 355 QNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDN 414

Query: 617 NLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEI 676
            L + WT   E         Y + W   +         + DW+                 
Sbjct: 415 MLWVEWTTPRESVKK-----YILEWCVLS----DKAPCITDWQ----------------- 448

Query: 677 KVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF 736
                               +     T        +      V        G P  I ++
Sbjct: 449 ------------------QEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAY 490

Query: 737 VTPEG 741
              + 
Sbjct: 491 -LKQA 494

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  142 bits (358), Expect = 1e-35
 Identities = 72/459 (15%), Positives = 122/459 (26%), Gaps = 84/459 (18%)

Query: 304 VKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS-----IVWLRGSEPIDFESEPRF 358
           +    +I+  PE   V+   + T  C                IVW      I  E     
Sbjct: 2   LDPCGYIS--PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQY-TI 58

Query: 359 VQSNDYSLTVTKSSELDSGQYTCRAQT--ELDFIEAQATLTVQVPLEAPSNFTLIQVIDA 416
           +     S+T T  +   + Q TC   T  +L+      T+   +P E P N + I V + 
Sbjct: 59  INRTASSVTFTDIAS-LNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCI-VNEG 116

Query: 417 KKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDK-FVPASK 475
           KK    W+      L  +F      T   +       +    +   T+  VD   V    
Sbjct: 117 KKMRCEWDGGRETHLETNF------TLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN 170

Query: 476 NFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY--LKWVKPEQPNGV 533
               V A N         I      +  P    +L  I     +    L W  P   + +
Sbjct: 171 IEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVI 230

Query: 534 LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE 593
           ++ Y I+Y++   +    +    P  +  T +S  +  L+P T+Y   +    + G G  
Sbjct: 231 ILKYNIQYRTKDASTWSQIP---PEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYW 287

Query: 594 SKY--------LFYVPFKNPDNV----EGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFW 641
           S +            P K P                + + W  +P  E N     Y +  
Sbjct: 288 SDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTL 347

Query: 642 RRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGES 701
            R  +       +          L    T   Y                           
Sbjct: 348 TRWKSHLQNYTVNAT-------KLTVNLTNDRYLA------------------------- 375

Query: 702 TTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
                            +   N       + +       
Sbjct: 376 ----------------TLTVRNLVGKSDAAVLTIPACDF 398

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  137 bits (345), Expect = 5e-34
 Identities = 96/626 (15%), Positives = 167/626 (26%), Gaps = 94/626 (15%)

Query: 130 VEPEFINAAEEETVTFEC-------KASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-- 180
           + PE          T  C           +    I W  N   I   P      +     
Sbjct: 8   ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI---PKEQYTIINRTAS 64

Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
            +T  ++         CN     G + ++VY   +  +    E PK+          L+C
Sbjct: 65  SVTFTDIAS-LNIQLTCNILTF-GQLEQNVYGITI-ISGLPPEKPKN----------LSC 111

Query: 241 RVFGAPKPEVNWIHNQKELTGGRYTI-LETGDLKITDVAFADSGEYTCF----------- 288
            V    K    W   ++      +T+  E    K  D         +C            
Sbjct: 112 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI 171

Query: 289 -----ARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS--------DP 335
                A N LG            +    + P +  V            ++          
Sbjct: 172 EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVIN-SEELSSILKLTWTNPSIKSVI 230

Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSG-QYTCR--AQTELDFIEA 392
            LK +I +         +  P    S   S TV     L    +Y  R     E      
Sbjct: 231 ILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQD---LKPFTEYVFRIRCMKEDGKGYW 287

Query: 393 Q---ATLTVQVPLEAPS-------NFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQT 442
                  +     + PS                 +   + W  + P    G    Y+V T
Sbjct: 288 SDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEV-T 346

Query: 443 WTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 502
            T       ++   VN      T++   +   +  A +   N       + +        
Sbjct: 347 LTRWKSH--LQNYTVN-----ATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQ 399

Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
               V  L+A P  +      WV+   P   +  Y +++  +          +       
Sbjct: 400 ATHPVMDLKAFPKDNML----WVEWTTPRESVKKYILEWCVLSDKAPCITDWQ--QEDGT 453

Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPD---NVEGRGSTPNNLV 619
              +     L  S  Y I +      G G+      Y+    P     V  +    N  V
Sbjct: 454 VHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAV 513

Query: 620 ISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVV 679
           + W  +P    N     Y IF+R   T         +D   +E  L++  +   Y ++ +
Sbjct: 514 LEWDQLPVDVQNGFIRNYTIFYR---TIIGNETAVNVDSSHTEYTLSSLTSDTLYMVR-M 569

Query: 680 QTWTEKDGEGSIRELIVNKGESTTTE 705
             +T++ G     E        TT +
Sbjct: 570 AAYTDE-GGKDGPEFTF-----TTPK 589

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  151 bits (383), Expect = 1e-40
 Identities = 51/322 (15%), Positives = 93/322 (28%), Gaps = 51/322 (15%)

Query: 131 EPEFINAAEEETVTFEC-----------KASGLPEPEIHWVHNGK------PISQAPPNP 173
               I   E+E    +C             +      + W    +      PI+   P  
Sbjct: 13  TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72

Query: 174 RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE---APKDEYT 230
           R     + +       +DTGNY C   N+         + V+            P  +  
Sbjct: 73  RISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLY 132

Query: 231 VDGKTVVLTCRVF-----GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEY 285
           ++     +TC         + KP + W     ++      I E  +L       +++G Y
Sbjct: 133 IEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNY 192

Query: 286 TCFARNKLGTAQGSGS----LTVKEHTHIT--------DQPEDYEVEAGQSATFRCNAVS 333
           TC             +    + V               +    YE E G+     C    
Sbjct: 193 TCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF 252

Query: 334 DPSLKL--SIVWLR-GSEPIDFESEPRFVQSNDYS----------LTVTKSSELD-SGQY 379
              +     + W   G +P D   +    +S  +S          L++ K +  D    Y
Sbjct: 253 SFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSY 312

Query: 380 TCRAQTELDFIEAQATLTVQVP 401
            C A++    +   A +  +VP
Sbjct: 313 VCHARSAKGEVAKAAKVKQKVP 334

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  134 bits (338), Expect = 1e-34
 Identities = 55/332 (16%), Positives = 98/332 (29%), Gaps = 62/332 (18%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPIN---------PSDRISQGNYGKSLIIKHVE 95
            L    ++       +     IW       +         P +RIS+      L  +   
Sbjct: 30  PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK--EKDVLWFRPTL 87

Query: 96  FSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVT----------- 144
            +D G+YTC + N    +K  +  L V+     +     +     +              
Sbjct: 88  LNDTGNYTCMLRNTTYCSKV-AFPLEVVQKD--SCFNSPMKLPVHKLYIEYGIQRITCPN 144

Query: 145 FECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT---- 200
            +       +P I W      I               ++      S+ GNY C  T    
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKI---QNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPEN 201

Query: 201 NSLGYVYKDVYVNVLA----HAPEITEAPKDEYTVD---GKTVVLTCRVF----GAPKPE 249
               ++ + + V V+       P +  +P D    +   G+ +++ C V+       + E
Sbjct: 202 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 261

Query: 250 VNWIHNQKELT----------GGRYTILE----TGDLKITDVAFAD-SGEYTCFARNKLG 294
           V W  + K+               ++  E    T  L I  V   D    Y C AR+  G
Sbjct: 262 VWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG 321

Query: 295 TAQGSGSLTVKEHTHITDQPEDYEVEAGQSAT 326
               +  +  K            E+  G  AT
Sbjct: 322 EVAKAAKVKQKV----PAPRYTVELACGFGAT 349

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 94.9 bits (235), Expect = 3e-21
 Identities = 34/223 (15%), Positives = 62/223 (27%), Gaps = 30/223 (13%)

Query: 223 EAPKDEYTVDGKTVVLTCRVF-----------GAPKPEVNWIHNQKELTGGRYT------ 265
           +  +     + +   + C +F            +    + W   +++             
Sbjct: 12  DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71

Query: 266 ---ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT----HITDQPEDYE 318
                E   L        D+G YTC  RN    ++ +  L V +           P    
Sbjct: 72  NRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKL 131

Query: 319 VEAGQSATFRCNAVS---DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
                     C  V      S+K +I W  G   I        V     +L+   +   +
Sbjct: 132 YIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ---NFNNVIPEGMNLSFLIALISN 188

Query: 376 SGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKK 418
           +G YTC      +      T T+ V +       +  VI +  
Sbjct: 189 NGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPN 231

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  140 bits (355), Expect = 2e-38
 Identities = 38/207 (18%), Positives = 70/207 (33%), Gaps = 26/207 (12%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPP---NPRRKVGP 179
               FT     +   E+  V F  +A       +++++ N K I + P    +  R  G 
Sbjct: 1   GIDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60

Query: 180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH------------------APEI 221
             + +E L+  D G Y     +     +  V +                        P  
Sbjct: 61  IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120

Query: 222 TEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETGD--LKITDVA 278
            E    E T     V+L C+V    K   + W  +++E++       + G   L IT+ +
Sbjct: 121 VEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 179

Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVK 305
             D+G Y    ++  G  +    L  +
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  125 bits (314), Expect = 8e-33
 Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 35/197 (17%)

Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYGKS 88
                +  K +V               +   +  +  +   I    +    I +      
Sbjct: 9   ELAVEILEKGQVRF------WMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAKSYSI------------------DLSVLAAPYFTV 130
           + ++ ++  D+G+YT ++ +G     S  +                  +      P+F V
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF-V 121

Query: 131 EPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKV--GPNRITIENL 187
           E        E  V  +CK + +  E  I W  + + IS    + +     G   + I   
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS---VDEKHDFKDGICTLLITEF 178

Query: 188 RKSDTGNYGCNATNSLG 204
            K D G Y     +  G
Sbjct: 179 SKKDAGIYEVILKDDRG 195

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  118 bits (298), Expect = 1e-30
 Identities = 32/203 (15%), Positives = 71/203 (34%), Gaps = 27/203 (13%)

Query: 222 TEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELT-GGRYTILETGD-----LKI 274
           T++      ++   V    +    +   +VN+I N+KE+  G +Y +    +     + +
Sbjct: 6   TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE------------------D 316
             +   D G YT   ++   T   +  L       +  + E                   
Sbjct: 66  EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS 125

Query: 317 YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDS 376
           +EV    +   +C   +    +  IVW +    I    E    +    +L +T+ S+ D+
Sbjct: 126 WEVTGECNVLLKCKVANIKK-ETHIVWYKDEREIS-VDEKHDFKDGICTLLITEFSKKDA 183

Query: 377 GQYTCRAQTELDFIEAQATLTVQ 399
           G Y    + +    +++  L  +
Sbjct: 184 GIYEVILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 73.8 bits (181), Expect = 4e-15
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 2/88 (2%)

Query: 36  QYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHV 94
            +V            V L C          I W KD   I+  ++    +   +L+I   
Sbjct: 119 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEF 178

Query: 95  EFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
              D G Y   + +  G+ KS  + L  
Sbjct: 179 SKKDAGIYEVILKDDRGKDKS-RLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 6/99 (6%)

Query: 311 TDQPEDYEVEAGQSATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSL 366
           T      E+       F   A     + K  + ++   + I    + +     +     +
Sbjct: 6   TKSELAVEILEKGQVRFWMQAEKLSGNAK--VNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAP 405
            + K  + D G YT + Q       +   L   V  +  
Sbjct: 64  FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 102

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  143 bits (362), Expect = 7e-38
 Identities = 35/194 (18%), Positives = 57/194 (29%), Gaps = 20/194 (10%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT-- 183
           P   V+    +    + V   C+  G    +  W+      S      +    P+     
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQS--ATVMKSGGLPSLGLTL 216

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF 243
                  +  N  C A N +G     V VNV         + +    V+     +   V 
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV-----SFPASVQLHTAVEMHHWCIPFSVD 271

Query: 244 GAPKPEVNWIHNQKELTG-----------GRYTILETGDLKITDVAFADSGEYTCFARNK 292
           G P P + W+ N   L                  +  G L++      ++G YT  A N 
Sbjct: 272 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331

Query: 293 LGTAQGSGSLTVKE 306
            G A  S      +
Sbjct: 332 FGQASASIMAAFMD 345

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  124 bits (312), Expect = 3e-31
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 17/196 (8%)

Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGDLKI 274
             P +     +     G  V+L C+V G    +  WI  + E   T  +   L +  L +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216

Query: 275 TDVA-FADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS 333
            +V    +    TC+A N +G A+ S  + V     +                   +   
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEM----HHWCIPFSVDG 272

Query: 334 DPSLKLSIVWLRGSEPID--------FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
            P    S+ WL     ++        F             L + + + +++G YT  A  
Sbjct: 273 QP--APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330

Query: 386 ELDFIEAQATLTVQVP 401
                 A         
Sbjct: 331 PFGQASASIMAAFMDN 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  118 bits (296), Expect = 4e-29
 Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 14/175 (8%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
           V L C   G  L Q  W    +  + +  +          +       ++ + TC   N 
Sbjct: 176 VLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND 235

Query: 110 VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQA 169
           VG A+      SV     F    +   A E           G P P + W+ NG  +++ 
Sbjct: 236 VGRAEV-----SVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNET 290

Query: 170 PPNPRRKVGPNR--------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
                  + P          + +      + GNY   A N  G     +    + 
Sbjct: 291 SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 345

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 70.5 bits (172), Expect = 3e-13
 Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 2/120 (1%)

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
               +  Q  +  V+ G     RC             W+                 +   
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRG--LEQAGWILTELEQSATVMKSGGLPSLGL 214

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNP 425
                +S+L+    TC A+ ++   E    + V  P     +  +          V   P
Sbjct: 215 TLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQP 274

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score =  135 bits (340), Expect = 1e-35
 Identities = 46/264 (17%), Positives = 86/264 (32%), Gaps = 32/264 (12%)

Query: 51  VELFCIFGG---TPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEV 106
             + C   G       Q   +     +NP+    +     K+ +    E       TC V
Sbjct: 21  GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAV 80

Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI 166
             G    ++    +++ + P   V       +E   VT +C+A     P      NG P 
Sbjct: 81  ILGNQSQET-LQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH----PRAKVTLNGVPA 135

Query: 167 SQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY----KDVYVNVLAHAPEIT 222
               P         ++ ++   + +  ++ C+AT  +        +   + VL   P + 
Sbjct: 136 QPLGP-------RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY-GPRLD 187

Query: 223 EA--PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA 280
           E   P +    +       C+ +G P PE+  + +           L  G+     V   
Sbjct: 188 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT-------FPLPIGES--VTVTRD 238

Query: 281 DSGEYTCFARNKLGTAQGSGSLTV 304
             G Y C AR+  G      ++ V
Sbjct: 239 LEGTYLCRARSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score =  127 bits (320), Expect = 4e-33
 Identities = 37/272 (13%), Positives = 69/272 (25%), Gaps = 32/272 (11%)

Query: 139 EEETVTFECKASGL---PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNY 195
            +   T  C   GL    E ++H     + ++                        T   
Sbjct: 17  VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 76

Query: 196 GCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN 255
            C              V + +  P            +G  V + C      K  +N +  
Sbjct: 77  TCAVILGNQSQETLQTVTIYSF-PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPA 135

Query: 256 QKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH------ 309
           Q         +     L +      +   ++C A  ++       + T +          
Sbjct: 136 Q--------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD 187

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
             D P ++        T  C A  +P     +  L+         E   V  +       
Sbjct: 188 ERDCPGNWTWPENSQQTPMCQAWGNP--LPELKCLKDGTFPLPIGESVTVTRD------- 238

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
                  G Y CRA++    +  + T+ V  P
Sbjct: 239 -----LEGTYLCRARSTQGEVTREVTVNVLSP 265

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score =  110 bits (277), Expect = 2e-27
 Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 28/190 (14%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI 90
             P    +  K EV     +V + C     P  +   + +GVP  P    +Q      L+
Sbjct: 97  SFPAPNVILTKPEV-SEGTEVTVKCE--AHPRAK--VTLNGVPAQPLGPRAQ------LL 145

Query: 91  IKHVEFSDQGSYTCEVSNGVG---EAKSYSIDLSVLAAPYFTVE--PEFINAAEEETVTF 145
           +K     +  S++C  +  V      K+ + +L VL  P       P      E    T 
Sbjct: 146 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTP 205

Query: 146 ECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY 205
            C+A G P PE+  + +G                       + +   G Y C A ++ G 
Sbjct: 206 MCQAWGNPLPELKCLKDGTFPLPIG------------ESVTVTRDLEGTYLCRARSTQGE 253

Query: 206 VYKDVYVNVL 215
           V ++V VNVL
Sbjct: 254 VTREVTVNVL 263

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score =  136 bits (343), Expect = 1e-35
 Identities = 47/308 (15%), Positives = 88/308 (28%), Gaps = 39/308 (12%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASG-LPEPE---IHWVHNGKPISQAPPNPRRKVGPN 180
           A   +++         +  T     +G  P P      W  + +P               
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------A 52

Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVL 238
            +T+ +    + G+Y     ++      +  V ++  A        P+  Y      V L
Sbjct: 53  TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVEL 112

Query: 239 TCRVF---GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGT 295
              V    G    +   +H     + G   I  T D+ I +     +G YT     +   
Sbjct: 113 HATVKFSGGKTPADNYELHYS--WSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESED 170

Query: 296 AQGSGSLTVKEHTHITDQP--EDYEVEAGQSATFRCNAVSD--------PSLKLSIVWLR 345
           +  S S  +   T   DQ   E   V  G   +       D        P+L +   W  
Sbjct: 171 SAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYL 230

Query: 346 GSEPIDF---------ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATL 396
             E             E+   F  + D  L    ++  D+ ++ C A+      +    +
Sbjct: 231 QREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290

Query: 397 TVQVPLEA 404
                 + 
Sbjct: 291 AASTSRKC 298

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score =  114 bits (286), Expect = 4e-28
 Identities = 41/284 (14%), Positives = 74/284 (26%), Gaps = 54/284 (19%)

Query: 58  GGTPLPQTI---WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK 114
           G  PLP  +   W+KD  P          N   +L +      + GSY   V +      
Sbjct: 28  GDEPLPSNLTYTWTKDDQPHE--------NNTATLTVADATSENAGSYKVTVQDTDTMTS 79

Query: 115 SYSIDLSVLAA--PYFTVEPEFINAAEEETVTFECK---ASGLPEPEIH-----WVHNGK 164
             S    +  A       EP+    + +  V        + G    + +     W     
Sbjct: 80  VESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGED 139

Query: 165 PISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEA 224
            I               ITI+       G Y                  ++     + + 
Sbjct: 140 VIDTTQ----------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQD 189

Query: 225 PKDEYTVD-GKTVVLTCRVF--------GAPKPEVNW--------------IHNQKELTG 261
             +  TV  G  + L   V         G P   + +              I ++     
Sbjct: 190 VVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEAL 249

Query: 262 GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             ++I   G L      + D+ ++ C A+        +  +   
Sbjct: 250 EGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAAS 293

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score =  102 bits (254), Expect = 5e-24
 Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 29/202 (14%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFG-APKPE---VNWIHNQKELTGGRYTILETGDLK 273
           A  ++        + G    LT  V G  P P      W  + +           T  L 
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN------TATLT 55

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH---ITDQPEDYEVEAGQSATFRCN 330
           + D    ++G Y    ++          + + E         +P+ + V +         
Sbjct: 56  VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHAT 115

Query: 331 AVS------DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ 384
                      + +L   W +G + ID              +T+ + +   +G YT +  
Sbjct: 116 VKFSGGKTPADNYELHYSWSKGEDVID----------TTQDITIQEFTADKNGVYTVKVW 165

Query: 385 TELDFIEAQATLTVQVPLEAPS 406
            E +   A A+  + +      
Sbjct: 166 GESEDSAASASTKIMLATMNVD 187

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  131 bits (331), Expect = 4e-35
 Identities = 43/210 (20%), Positives = 67/210 (31%), Gaps = 33/210 (15%)

Query: 129 TVEPEFINAAEEETVTFECKASGLPEP----EIHWVHNGKPISQAPP------------- 171
           T   + I  A+ ET    CK +  PE     +I W+ +                      
Sbjct: 4   TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63

Query: 172 ------------NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP 219
                       +   K G   I + NL+ SD G Y C    + G   K   + VL   P
Sbjct: 64  YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-KP 122

Query: 220 EITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELT--GGRYTILETGDLKITD 276
             T    D     G    L C    G+   +  W       T        + +  + + +
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKN 182

Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            +   SG Y+C  +N++G+ Q    L V  
Sbjct: 183 ASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  113 bits (284), Expect = 8e-29
 Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 35/204 (17%)

Query: 44  VALRNKKVELFCIFGGTPLPQT----IWSKDGVPINPSDRISQGNYGK------------ 87
              + +   L C F  +P  Q      W          D++     G             
Sbjct: 11  EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70

Query: 88  --------------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
                         S+ + +++ SD G+Y C+V    G A      L+VL  P  T    
Sbjct: 71  RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK-KFLLTVLVKPSGTRCFV 129

Query: 134 FINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-ITIENLRKSD 191
             +         +C+   G    +  W       +   P P      +  I+++N     
Sbjct: 130 DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQT--MPTPWLAEMTSPVISVKNASSEY 187

Query: 192 TGNYGCNATNSLGYVYKDVYVNVL 215
           +G Y C   N +G     + ++V+
Sbjct: 188 SGTYSCTVQNRVGSDQCMLRLDVV 211

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  110 bits (277), Expect = 8e-28
 Identities = 42/214 (19%), Positives = 65/214 (30%), Gaps = 34/214 (15%)

Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKP----EVNW----------------------I 253
            IT   +      G+T  L C+   +P+     ++ W                       
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 254 HNQKELTGGRYTILET------GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
            N      GR              + +T++  +D G Y C  +   G A     LTV   
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121

Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
              T    D   E G     +C      SL L   W + S+       P   +     ++
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEG-SLPLQFEWQKLSDSQ-TMPTPWLAEMTSPVIS 179

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           V  +S   SG Y+C  Q  +   +    L V  P
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 59.7 bits (144), Expect = 3e-10
 Identities = 25/125 (20%), Positives = 34/125 (27%), Gaps = 27/125 (21%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPS--LKLSIVWLRGSEPIDFESEP---------- 356
            IT   +  E   G++A   C     P     L I WL          +           
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 357 ---------------RFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
                            V+S D S+ VT     D G Y C+ +        +  LTV V 
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121

Query: 402 LEAPS 406
                
Sbjct: 122 PSGTR 126

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score =  127 bits (320), Expect = 2e-33
 Identities = 31/200 (15%), Positives = 59/200 (29%), Gaps = 12/200 (6%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSP--QSLRGHFRGYKVQTWTEKDGEGSIRELIV 457
           +P+  P       ++      ++W   S          R Y V+ W       +  +   
Sbjct: 3   LPMMPPVGVQ-ASILSHDTIRITWADNSLPKHQKITDSRYYTVR-WKTNIPANTKYKNA- 59

Query: 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG---TVQSLEAIP 514
               + +  V    P +     V+   G  +   S      T E VP       ++ +  
Sbjct: 60  -NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKE 118

Query: 515 LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP 574
                  + W  P + NG + GY I Y +    ++   +            + ++  L  
Sbjct: 119 GKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIE---PVVGNRLTHQIQELTL 175

Query: 575 STKYRIHLAGYTKAGDGAES 594
            T Y   +      G G  S
Sbjct: 176 DTPYYFKIQARNSKGMGPMS 195

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 62/253 (24%)

Query: 500 PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQP----NGVLMGYKIKYQSVKGTKVGPLLER 555
           P   P     ++A  L      + W     P          Y +++++            
Sbjct: 4   PMMPP---VGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA------NT 54

Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK-YLFY----VPFKNPDN--V 608
               ++ TT S  + GL+P+T Y   +           S          VP   P +  V
Sbjct: 55  KYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTV 114

Query: 609 EGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQ 668
             +   P  ++++W   P  E N     Y I++      E                    
Sbjct: 115 VSKEGKPKTIIVNWQ--PPSEANGKITGYIIYYSTDVNAE-------------------- 152

Query: 669 PTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNG 728
                     +  W  +   G+            T ++ +    +  + ++ A N    G
Sbjct: 153 ----------IHDWVIEPVVGN----------RLTHQIQELTLDTPYYFKIQARNSKGMG 192

Query: 729 PPSEIISFVTPEG 741
           P SE + F TP+ 
Sbjct: 193 PMSEAVQFRTPKA 205

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 73.7 bits (181), Expect = 5e-15
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 3/108 (2%)

Query: 400 VPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
           VP   P + T++      K + V+W P  P    G   GY +   T+ + E     +   
Sbjct: 104 VPTSPPKDVTVVSKEGKPKTIIVNWQP--PSEANGKITGYIIYYSTDVNAEIHDWVIEPV 161

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT 506
            G   T ++ +    +  + ++ A N    GP SE + F TP+     
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHHH 209

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 16/144 (11%), Positives = 35/144 (24%), Gaps = 45/144 (31%)

Query: 600 VPFKNPDNVEGRGSTPNNLVISWT--AMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLD 657
           +P   P  V+    + + + I+W   ++P+ +       Y + W+ +    A  +    +
Sbjct: 3   LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTN--IPANTKYKNAN 60

Query: 658 WRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA 717
                 ++        YE                                          
Sbjct: 61  ATTLSYLVTGLKPNTLYEF----------------------------------------- 79

Query: 718 RVLAFNGAYNGPPSEIISFVTPEG 741
            V+   G  +   S      T E 
Sbjct: 80  SVMVTKGRRSSTWSMTAHGTTFEL 103

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  125 bits (316), Expect = 4e-33
 Identities = 37/193 (19%), Positives = 57/193 (29%), Gaps = 30/193 (15%)

Query: 135 INAAEEETVTFEC---KASGLPEPEIHWVHNGKP-------------ISQAPPNPR---- 174
           + A   E VT      + S  PE E+ W   G               I    P       
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 175 -RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
            R      + +     S  GNY C        V K  +++V+     ++   +     D 
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSERSQFPDF 119

Query: 234 KTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLKI---TDVAFADSGEY 285
             + +TC V   P P V W+  +          G     + G L +     +        
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPV 179

Query: 286 TCFARNKLGTAQG 298
           TC  +N    A G
Sbjct: 180 TCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  121 bits (304), Expect = 1e-31
 Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 9/165 (5%)

Query: 56  IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS 115
           +  G      I+ +   P      I +      L++     S  G+Y C +  G  E  +
Sbjct: 38  VLIGRMHHDVIFIEW--PFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETE-VT 94

Query: 116 YSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPR 174
               LSV+     +V  E     +   +T  C  +  P P + W+   G   +    N  
Sbjct: 95  KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGG 154

Query: 175 RKVGPNR----ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
                +         +L K       C   N     +  VYV+  
Sbjct: 155 VMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG-VYVSGY 198

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  108 bits (271), Expect = 3e-27
 Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 233 GKTVVLTC---RVFGAPKPEVNWIHNQKELT------------------GGRYTILETGD 271
           G+ V LT    RV   P+ EV+W                           G + I  + +
Sbjct: 6   GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65

Query: 272 ---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFR 328
              L +T    +  G Y C  +           L+V +   ++   E  +       T  
Sbjct: 66  TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVT 125

Query: 329 CNAVSDPSLKLSIVWLR--GSEPIDFESEPRFVQSNDYSLTVTKSSEL---DSGQYTCRA 383
           C   + P     + WL   G EP    +    ++  D SL+V     L        TC  
Sbjct: 126 CTVNAFP--HPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG 183

Query: 384 QTELDFIEAQA 394
           + + +  EA  
Sbjct: 184 KNDKE--EAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 6/91 (6%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK----DGVPINPSDRISQGNYG 86
             P    V  ++        + + C     P P   W      +  P   +  + +   G
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161

Query: 87  KSLI--IKHVEFSDQGSYTCEVSNGVGEAKS 115
              +     +        TC   N   EA  
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 16/94 (17%)

Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
           +     P + +V  G         +  P      +                   N + L 
Sbjct: 27  SWFKLGPGEEQVLIG-RMHHDVIFIEWPFRGFFDIHRSA---------------NTFFLV 70

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           VT ++    G Y CR +     +  Q  L+V  P
Sbjct: 71  VTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP 104

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score =  121 bits (306), Expect = 7e-33
 Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 2/110 (1%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGDLKIT 275
            P I + P ++      T VL+C   G+P P + W  +   +     R   LE G L+I 
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSA 325
                D+G YTC A    G A  S  + V+E       P   +     SA
Sbjct: 68  YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-RI 182
             P     P     A + T    C A+G P P I W  +G  +S    + R K   N  +
Sbjct: 7   GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVS--TQDSRIKQLENGVL 64

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKD 227
            I   +  DTG Y C A+   G      Y+ V        + P+ 
Sbjct: 65  QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF-GVPVQPPRP 108

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 81.4 bits (201), Expect = 1e-18
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
            I   P +  V    +    C A   P    +I+W +    +    + R  Q  +  L +
Sbjct: 10  VIRQGPVNQTVAVDGTFVLSCVATGSP--VPTILWRKDGVLVS-TQDSRIKQLENGVLQI 66

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
             +   D+G+YTC A T        A + VQ  
Sbjct: 67  RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF 99

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 76.3 bits (188), Expect = 6e-17
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSY 102
               +    L C+  G+P+P  +W KDGV ++  D RI Q   G  L I++ +  D G Y
Sbjct: 19  TVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG-VLQIRYAKLGDTGRY 77

Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN 136
           TC  S   GEA ++S  + V         P   +
Sbjct: 78  TCIASTPSGEA-TWSAYIEVQEFGVPVQPPRPTD 110

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  123 bits (309), Expect = 2e-32
 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI--------- 182
            + +   + +TV   C AS     + HW ++ +             GP+++         
Sbjct: 2   KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61

Query: 183 ---------TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDG 233
                     I+NL+  D+  Y C   +    V   V+            A  D + + G
Sbjct: 62  LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLT---------ANSDTHLLQG 112

Query: 234 KTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKL 293
           +++ LT        P V         +     I     L ++ +   DSG +TC      
Sbjct: 113 QSLTLTLESPPGSSPSVQC------RSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQ 166

Query: 294 GTAQGSGSLTV 304
              +    + V
Sbjct: 167 KKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  109 bits (274), Expect = 8e-28
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 37/188 (19%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-------------------SLII 91
           VEL C        Q  W          ++ S    G                     LII
Sbjct: 13  VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72

Query: 92  KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG 151
           K+++  D  +Y CEV +   E +     L        T   +  +  + +++T   ++  
Sbjct: 73  KNLKIEDSDTYICEVEDQKEEVQLLVFGL--------TANSD-THLLQGQSLTLTLESPP 123

Query: 152 LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY 211
              P +             P  +   G   +++  L   D+G + C    +   V   + 
Sbjct: 124 GSSPSVQCRS---------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 174

Query: 212 VNVLAHAP 219
           + VLA   
Sbjct: 175 IVVLAFQK 182

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  104 bits (261), Expect = 6e-26
 Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 40/192 (20%)

Query: 229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-------------------TGGRYTILET 269
               G TV LTC        + +W ++ +                        R ++ + 
Sbjct: 6   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65

Query: 270 GD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATF 327
           G+  L I ++   DS  Y C   ++           V+          D  +  GQS T 
Sbjct: 66  GNFPLIIKNLKIEDSDTYICEVEDQ--------KEEVQLLVFGLTANSDTHLLQGQSLTL 117

Query: 328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL 387
              +        S+                       +L+V++    DSG +TC      
Sbjct: 118 TLESPPGS--SPSVQCRSPRGKN---------IQGGKTLSVSQLELQDSGTWTCTVLQNQ 166

Query: 388 DFIEAQATLTVQ 399
             +E +  + V 
Sbjct: 167 KKVEFKIDIVVL 178

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score =  121 bits (304), Expect = 1e-31
 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 15/192 (7%)

Query: 225 PKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY-TILETGDLKITDVAFADS 282
           P+  Y    G +V LTC   G   P  +W         G+      T  L +  V+F + 
Sbjct: 7   PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNE 66

Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD-PSLKLSI 341
             Y C A  +    +    + +       +      +EAG+  T +C+     P  +L I
Sbjct: 67  HSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEI 126

Query: 342 VWLRGSEPIDFES-----EPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELD-------F 389
             L+G   +  +      + + +++    +T T   E       CRA+  +D        
Sbjct: 127 DLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTV 186

Query: 390 IEAQATLTVQVP 401
            +A   L V + 
Sbjct: 187 RQAVKELQVYIS 198

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score =  101 bits (251), Expect = 2e-24
 Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 15/184 (8%)

Query: 128 FTVEPEFINAAEE-ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
               PE    A+  ++V+  C  +G   P   W       S        +   + +T+  
Sbjct: 3   IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQI--DSPLNGKVTNEGTTSTLTMNP 60

Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA- 245
           +   +  +Y C AT     + K + V + +  P+  E         GK + + C V    
Sbjct: 61  VSFGNEHSYLCTATCESRKLEKGIQVEIYSF-PKDPEIHLSGPLEAGKPITVKCSVADVY 119

Query: 246 --PKPEVNWIHNQKELTGGRYT------ILETGDLKITDVAFA--DSGEYTCFARNKLGT 295
              + E++ +     +    +        LET  L++T             C A+  +  
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179

Query: 296 AQGS 299
               
Sbjct: 180 MDSV 183

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 89.1 bits (220), Expect = 2e-20
 Identities = 25/196 (12%), Positives = 58/196 (29%), Gaps = 18/196 (9%)

Query: 42  KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGS 101
           + +A     V L C   G   P   W +  +    + +++      +L +  V F ++ S
Sbjct: 10  RYLAQIGDSVSLTCSTTGCESPFFSW-RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHS 68

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG---LPEPEIH 158
           Y C  +    +     I + + + P              + +T +C  +        EI 
Sbjct: 69  YLCTATCESRKL-EKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEID 127

Query: 159 WVHNGKPIS-----QAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY------ 207
            +     +      +       +     +T   + +       C A   +  +       
Sbjct: 128 LLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVR 187

Query: 208 -KDVYVNVLAHAPEIT 222
                + V   +P+ T
Sbjct: 188 QAVKELQVY-ISPKNT 202

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 5/99 (5%)

Query: 309 HITDQPEDYE-VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
            I   PE     + G S +  C+            W    +     +     +    +LT
Sbjct: 2   KIETTPESRYLAQIGDSVSLTCSTTGCE--SPFFSWRTQID--SPLNGKVTNEGTTSTLT 57

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
           +   S  +   Y C A  E   +E    + +    + P 
Sbjct: 58  MNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPE 96

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score =  119 bits (300), Expect = 7e-31
 Identities = 65/184 (35%), Positives = 92/184 (50%), Gaps = 11/184 (5%)

Query: 501 EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS 560
           + VP   +    I   +    + W +       ++ Y I++     T   P      Y  
Sbjct: 3   QDVPNAPKLTG-ITCQADKAEIHWEQQGDNRSPILHYTIQFN----TSFTPASWDAAYEK 57

Query: 561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV------PFKNPDNVEGRGST 614
            P T S+ +  + P   Y   +  + K G    S +          PFKNPDNV G+G+ 
Sbjct: 58  VPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTE 117

Query: 615 PNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPY 674
           PNNLVISWT MPEIEHNAP+F Y + W+R     AW  +++ DWRQ+ +V+A+QPTF  Y
Sbjct: 118 PNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKY 177

Query: 675 EIKV 678
            IKV
Sbjct: 178 LIKV 181

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 77.1 bits (190), Expect = 3e-16
 Identities = 37/202 (18%), Positives = 60/202 (29%), Gaps = 16/202 (7%)

Query: 398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV 457
             VP  AP    +     A KA + W        R     Y +Q +       S      
Sbjct: 3   QDVP-NAPKLTGI--TCQADKAEIHWEQ--QGDNRSPILHYTIQ-FNTSFTPASWDAAYE 56

Query: 458 NKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEI-ISFVTPEGVP-GTVQSLEAIP 514
               + ++ V +  P +   F RV+AFN     PPS    S  T   VP     ++    
Sbjct: 57  KVPNTDSSFVVQMSPWANYTF-RVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQG 115

Query: 515 LGSSAFYLKWVKPEQP--NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL 572
              +   + W    +   N     Y + ++                I D    +  +A  
Sbjct: 116 TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNN----IFDWRQNNIVIADQ 171

Query: 573 EPSTKYRIHLAGYTKAGDGAES 594
               KY I +      G+   +
Sbjct: 172 PTFVKYLIKVVAINDRGESNVA 193

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 2/101 (1%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
            VP + P N    Q  +    V+SW P+           Y V  W       +     + 
Sbjct: 102 DVPFKNPDNVV-GQGTEPNNLVISWTPMPEIEHNAPNFHYYVS-WKRDIPAAAWENNNIF 159

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
                   +       K   +V+A N       +       
Sbjct: 160 DWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGY 200

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score =  118 bits (296), Expect = 1e-30
 Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 24/181 (13%)

Query: 141 ETVTFECKASGLPEPEIH--WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCN 198
             +   C  +          W+  G  + +            +   +       G Y C 
Sbjct: 14  SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG------QKTEFKVDSDDQWGEYSCV 67

Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQK 257
                        + +    P +      E+  +G+T +L C+    P   +  W     
Sbjct: 68  FLPEPM---GTANIQLHG-PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITD 123

Query: 258 EL-------TGGRYTILETGD---LKITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVKE 306
                    +  R+ +  +     L I ++    D G+Y C   +  G+ Q   +L V+ 
Sbjct: 124 SEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183

Query: 307 H 307
           H
Sbjct: 184 H 184

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score =  117 bits (293), Expect = 2e-30
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 17/177 (9%)

Query: 233 GKTVVLTCRVFGAPKPEVN--WIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFAR 290
           G  ++LTC +  +        W+     L       L     +    +    GEY+C   
Sbjct: 13  GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA---LPGQKTEFKVDSDDQWGEYSCVFL 69

Query: 291 NKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSE-- 348
            +     G+ ++ +     +        +  G++A   C + S P +     W + ++  
Sbjct: 70  PE---PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV-TDWAWYKITDSE 125

Query: 349 --PIDFESEPRFV---QSNDYSLTVTK-SSELDSGQYTCRAQTELDFIEAQATLTVQ 399
              +   SE RF          L +   + E D GQY C   +     +A  TL V+
Sbjct: 126 DKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score =  112 bits (281), Expect = 9e-29
 Identities = 40/185 (21%), Positives = 62/185 (33%), Gaps = 20/185 (10%)

Query: 44  VALRNKKVELFCIFGGTPLPQT--IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGS 101
           V     K+ L C    +    T   W K GV +           G+    K       G 
Sbjct: 9   VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVDSDDQWGE 63

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWV 160
           Y+C            + ++ +   P         +  E ET    CK+  +P   +  W 
Sbjct: 64  YSCVFLPEPMG----TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY 119

Query: 161 HNGKPISQAPPN---PRRKVGPN----RITIENL-RKSDTGNYGCNATNSLGYVYKDVYV 212
                  +A  N    R  V  +     + IENL  ++D G Y CN T+S G     + +
Sbjct: 120 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179

Query: 213 NVLAH 217
            V +H
Sbjct: 180 RVRSH 184

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 58.1 bits (140), Expect = 7e-10
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 9/83 (10%)

Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQ 378
            + G      C+     +      WL+G   +  ++ P               S+   G+
Sbjct: 10  EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP------GQKTEFKVDSDDQWGE 63

Query: 379 YTCRAQTELDFIEAQATLTVQVP 401
           Y+C    E       A + +  P
Sbjct: 64  YSCVFLPE---PMGTANIQLHGP 83

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 55.4 bits (133), Expect = 5e-09
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 11/110 (10%)

Query: 23  GISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINP----- 76
             +A+   H P +    +  E     +   L C     P      W K     +      
Sbjct: 73  MGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG 132

Query: 77  -SDRISQGNYGK--SLIIKHVEF-SDQGSYTCEVSNGVGEAKSYSIDLSV 122
              R    +      L I+++   +D G Y C  ++  G  ++  I L V
Sbjct: 133 SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA-IITLRV 181

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  121 bits (305), Expect = 6e-30
 Identities = 44/256 (17%), Positives = 84/256 (32%), Gaps = 20/256 (7%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           +PL  P+N  L    D     VSW   +         GY++ T      +G+  E +V+ 
Sbjct: 1   MPLSPPTNLHLEANPDTGVLTVSWERSTT----PDITGYRITTTPTNGQQGNSLEEVVH- 55

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSA 519
            + ++   D   P  +    V           S  IS      VP  +  L  + +  S+
Sbjct: 56  ADQSSCTFDNLSPGLEYNVSVYTVKD---DKESVPISDTIIPEVPQ-LTDLSFVDITDSS 111

Query: 520 FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
             L+W      +  ++GY+I   +                 D +     + GLEP   Y 
Sbjct: 112 IGLRWTPL--NSSTIIGYRITVVAAGEGI-----PIFEDFVDSSVGYYTVTGLEPGIDYD 164

Query: 580 IHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRI 639
           I +      G+ A +          P ++      P+ + ++W   P    +     + +
Sbjct: 165 ISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLV 220

Query: 640 FWRRHNTGEAWNQDDV 655
            +      E   +  +
Sbjct: 221 RYSPVKNEEDVAELSI 236

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  112 bits (282), Expect = 5e-27
 Identities = 53/341 (15%), Positives = 107/341 (31%), Gaps = 31/341 (9%)

Query: 341 IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSG-QYTCRAQTELDFIEAQA-TLTV 398
            +    +      S    V ++  S T      L  G +Y     T  D  E+   + T+
Sbjct: 36  RITTTPTNGQQGNSLEEVVHADQSSCTFD---NLSPGLEYNVSVYTVKDDKESVPISDTI 92

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
              +   ++ + + +       + W P++         GY++ T         I E  V+
Sbjct: 93  IPEVPQLTDLSFVDI-TDSSIGLRWTPLNS----STIIGYRI-TVVAAGEGIPIFEDFVD 146

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSS 518
                 T V    P       V+         P+ +               L    +G  
Sbjct: 147 SSVGYYT-VTGLEPGIDYDISVITLINGGESAPTTLTQQTAV----PPPTDLRFTNIGPD 201

Query: 519 AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY 578
              + W  P  P+  L  + ++Y  VK  +     +       P+  +  L  L P T+Y
Sbjct: 202 TMRVTWAPP--PSIDLTNFLVRYSPVKNEE-----DVAELSISPSDNAVVLTNLLPGTEY 254

Query: 579 RIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYR 638
            + ++   +  +    +        +P  ++    T N+  + W A       A    YR
Sbjct: 255 VVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIA-----PRATITGYR 309

Query: 639 IFWRRHNTGEAWNQDDVLDWRQSELVLAN-QPTFQPYEIKV 678
           I     +      ++D +   ++ + L N  P    Y + +
Sbjct: 310 IRHHPEHFSG-RPREDRVPHSRNSITLTNLTP-GTEYVVSI 348

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 94.5 bits (235), Expect = 7e-21
 Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 24/240 (10%)

Query: 357 RFVQSNDYSLTVTKSSELDSG-QYTCRAQTELDFIE-AQATLTVQVPLEAPSNFTLIQVI 414
            FV S+    TVT    L+ G  Y     T ++  E A  TLT Q  +  P++     + 
Sbjct: 143 DFVDSSVGYYTVT---GLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNI- 198

Query: 415 DAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS 474
                 V+W P  P S       + V  ++    E  + EL ++        +   +P +
Sbjct: 199 GPDTMRVTWAP--PPS--IDLTNFLV-RYSPVKNEEDVAELSIS-PSDNAVVLTNLLPGT 252

Query: 475 KNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVL 534
           +    V +    +   P       T      +   ++   + +++F + W     P   +
Sbjct: 253 EYVVSVSSVYEQHESTPLRG-RQKTG---LDSPTGIDFSDITANSFTVHW---IAPRATI 305

Query: 535 MGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
            GY+I++     +               +  S  L  L P T+Y + +       +    
Sbjct: 306 TGYRIRHHPEHFSG-----RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL 360

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 27/239 (11%), Positives = 57/239 (23%), Gaps = 54/239 (22%)

Query: 503 VP-GTVQSLEAIPLGS-SAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS 560
           +P     +L            + W +   P+  + GY+I      G +   L E +    
Sbjct: 1   MPLSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVH--- 55

Query: 561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVI 620
               +S     L P  +Y + +       +                ++     T +++ +
Sbjct: 56  -ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGL 114

Query: 621 SWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQ 680
            WT +     ++    YRI       G     +D +D       +        Y+I    
Sbjct: 115 RWTPLN----SSTIIGYRITVVAAGEGI-PIFEDFVDSSVGYYTVTGLEPGIDYDI---- 165

Query: 681 TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 739
                                                 V+         P+ +      
Sbjct: 166 -------------------------------------SVITLINGGESAPTTLTQQTAV 187

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 14/154 (9%)

Query: 353 ESEPRFVQSNDYSLTVTKSSELDSG-QYTCRAQTELDFIE-AQATLTVQVPLEAPSNFTL 410
           +     +  +D ++ +T    L  G +Y     +  +  E        +  L++P+    
Sbjct: 230 DVAELSISPSDNAVVLT---NLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDF 286

Query: 411 IQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKF 470
             +  A    V W        R    GY+++    +   G  RE  V      +  +   
Sbjct: 287 SDI-TANSFTVHWIAP-----RATITGYRIR-HHPEHFSGRPREDRVP-HSRNSITLTNL 338

Query: 471 VPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
            P ++    ++A NG    P   I    T     
Sbjct: 339 TPGTEYVVSIVALNGREESPLL-IGQQSTVSAHH 371

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score =  117 bits (293), Expect = 1e-29
 Identities = 33/242 (13%), Positives = 49/242 (20%), Gaps = 66/242 (27%)

Query: 129 TVEPEFINAAEEETVTFECK---ASGLPEPEIHWVHNGKPISQAPPNPRRKV-------- 177
                 +      TV   C    A+    P I W+    P                    
Sbjct: 6   RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65

Query: 178 ----------------------GPNRITIENLRKSDTGNYGCNATNS-----LGYVYKDV 210
                                     + + ++   D G Y C           G   K V
Sbjct: 66  VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125

Query: 211 YVNVLAHAPE---ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG------ 261
            + V  H P         +     +G  + +TC         V W               
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTY 185

Query: 262 -------------------GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSL 302
                              GR +     +L I      D+G   C      G      S 
Sbjct: 186 QPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245

Query: 303 TV 304
           T+
Sbjct: 246 TI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 98.1 bits (243), Expect = 5e-23
 Identities = 32/242 (13%), Positives = 53/242 (21%), Gaps = 64/242 (26%)

Query: 38  VTRKKEVALRNKKVELFCIF---GGTPLPQTIWSKDGVPINPSDRIS------------- 81
            T  +        VEL C +     T  P   W K   P   +                 
Sbjct: 7   TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFV 66

Query: 82  ------------------QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
                                   +L + HV   D G Y C+V+      +      SV+
Sbjct: 67  ESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVV 126

Query: 124 --------AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR 175
                   +        E +   E   +T  C  +      + W               +
Sbjct: 127 LKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQ 186

Query: 176 KVGPNR----------------------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
            +                          + I   + +D G   C      G +  D    
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246

Query: 214 VL 215
           +L
Sbjct: 247 IL 248

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 94.6 bits (234), Expect = 7e-22
 Identities = 41/246 (16%), Positives = 62/246 (25%), Gaps = 70/246 (28%)

Query: 223 EAPKDEYTVD-GKTVVLTCRVF---GAPKPEVNWIHNQKELTG----------------- 261
                E  V  G TV L C          P ++W+                         
Sbjct: 6   RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65

Query: 262 --------------GRYTILETGD--LKITDVAFADSGEYTCFARNK-----LGTAQGSG 300
                         GR ++       L++T V   D G Y C           G    S 
Sbjct: 66  VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125

Query: 301 SLTVKEHT----HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID----- 351
            L V  HT          E  +V+ G   T  C          ++ W  G    +     
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCA--NANVTWYTGPTFFENYETG 183

Query: 352 -----------------FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
                             E   R   S   +L +  +   D+G+  C   T    ++A  
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243

Query: 395 TLTVQV 400
           + T+  
Sbjct: 244 SSTILK 249

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 34/131 (25%)

Query: 310 ITDQPEDYEVEAGQSATFRCNA-VSDPSLKLSIVWLRGSEPI------------------ 350
           +     + EV AG +    C+  +++ +    I WL+G+ P                   
Sbjct: 5   VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64

Query: 351 ------------DFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL---DFIEAQAT 395
                       DF            +L +T     D G+Y C+        +F     +
Sbjct: 65  FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKS 124

Query: 396 LTVQVPLEAPS 406
           + ++V    PS
Sbjct: 125 VVLKVTGHTPS 135

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  118 bits (298), Expect = 3e-29
 Identities = 56/358 (15%), Positives = 114/358 (31%), Gaps = 32/358 (8%)

Query: 341 IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSG-QYTCRAQTELDFIEAQA-TLTV 398
            +    +      S    V ++  S T      L  G +Y     T  D  E+   + T+
Sbjct: 35  RITTTPTNGQQGNSLEEVVHADQSSCTFD---NLSPGLEYNVSVYTVKDDKESVPISDTI 91

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
              +  P++      I      V+W P            + V  ++    E  + EL ++
Sbjct: 92  IPAVPPPTDLR-FTNIGPDTMRVTWAPPPS----IDLTNFLV-RYSPVKNEEDVAELSIS 145

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSS 518
                   +   +P ++    V +    +   P         +    +   ++   + ++
Sbjct: 146 -PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR----GRQKTGLDSPTGIDFSDITAN 200

Query: 519 AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY 578
           +F + W     P   + GY+I++     +               +  S  L  L P T+Y
Sbjct: 201 SFTVHW---IAPRATITGYRIRHHPEHFSG-----RPREDRVPHSRNSITLTNLTPGTEY 252

Query: 579 RIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYR 638
            + +       +              P ++E   +TP +L+ISW A P          YR
Sbjct: 253 VVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDA-P----AVTVRYYR 307

Query: 639 IFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIV 696
           I +     G +  Q+  +   +S   ++       Y I  V   T + G+       +
Sbjct: 308 ITYGETG-GNSPVQEFTVPGSKSTATISGLKPGVDYTIT-VYAVTGR-GDSPASSKPI 362

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  112 bits (281), Expect = 7e-27
 Identities = 56/317 (17%), Positives = 103/317 (32%), Gaps = 34/317 (10%)

Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
           PL  P+N  L    D     VSW   +         GY++ T      +G+  E +V+  
Sbjct: 1   PLSPPTNLHLEANPDTGVLTVSWERSTT----PDITGYRITTTPTNGQQGNSLEEVVH-A 55

Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAF 520
           + ++   D   P  +    V           S  IS      VP     L    +G    
Sbjct: 56  DQSSCTFDNLSPGLEYNVSVYTVKD---DKESVPISDTIIPAVPP-PTDLRFTNIGPDTM 111

Query: 521 YLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 580
            + W  P  P+  L  + ++Y  VK  +     +       P+  +  L  L P T+Y +
Sbjct: 112 RVTWAPP--PSIDLTNFLVRYSPVKNEE-----DVAELSISPSDNAVVLTNLLPGTEYVV 164

Query: 581 HLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIF 640
            ++   +  +    +        +P  ++    T N+  + W A       A    YRI 
Sbjct: 165 SVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIA-----PRATITGYRIR 219

Query: 641 WRRHNTGEAWNQDDVLDWRQSELVLAN-QPTFQPYEIKV----------VQTWTEKDGEG 689
                      ++D +   ++ + L N  P    Y + +          +    +     
Sbjct: 220 HHP-EHFSGRPREDRVPHSRNSITLTNLTP-GTEYVVSIVALNGREESPLLIGQQSTVSD 277

Query: 690 SIRELIVNKGESTTTEV 706
             R+L V     T+  +
Sbjct: 278 VPRDLEVVAATPTSLLI 294

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 24/238 (10%), Positives = 56/238 (23%), Gaps = 53/238 (22%)

Query: 504 PGTVQSLEAIPLG-SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
                +L       +    + W +   P+  + GY+I      G +   L E +      
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVH----A 55

Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISW 622
             +S     L P  +Y + +       +              P ++      P+ + ++W
Sbjct: 56  DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTW 115

Query: 623 TAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTW 682
              P    +     + + +      E   +  +     + +VL N      Y +      
Sbjct: 116 APPP----SIDLTNFLVRYSPVKNEEDVAELSI-SPSDNAVVLTNLLPGTEYVV------ 164

Query: 683 TEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
                                               V +    +   P         +
Sbjct: 165 -----------------------------------SVSSVYEQHESTPLRGRQKTGLD 187

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score =  112 bits (282), Expect = 6e-29
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 20/184 (10%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITI 184
               +EP++ +  E+++VT +C+ +  PE     W HN   IS            +   I
Sbjct: 8   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ---------ASSYFI 58

Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF- 243
           +    +D+G Y C    S       V + V      + +AP+  +      + L C  + 
Sbjct: 59  DAATVNDSGEYRCQTNLSTL--SDPVQLEVH-IGWLLLQAPRWVFKE-EDPIHLRCHSWK 114

Query: 244 GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQ-GSGSL 302
                +V ++ N K+            D  I      DSG Y C            + ++
Sbjct: 115 NTALHKVTYLQNGKDRKYFH----HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170

Query: 303 TVKE 306
           T+ +
Sbjct: 171 TITQ 174

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 93.0 bits (231), Expect = 5e-22
 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 19/183 (10%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKITDV 277
             +   P+    ++  +V L C+   +P+     W HN+  ++       +     I   
Sbjct: 8   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAA 61

Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSL 337
              DSGEY C       +      L V     +   P     E       RC++  + +L
Sbjct: 62  TVNDSGEYRCQTNLSTLSD--PVQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWKNTAL 118

Query: 338 KLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL-DFIEAQATL 396
              + +L+  +   +         ++    + K++  DSG Y CR      +       +
Sbjct: 119 -HKVTYLQNGKDRKY-------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170

Query: 397 TVQ 399
           T+ 
Sbjct: 171 TIT 173

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 89.5 bits (222), Expect = 8e-21
 Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 22/168 (13%)

Query: 50  KVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
            V L C    +P   +  W  +   I+            S  I     +D G Y C+ + 
Sbjct: 24  SVTLKCQGAYSPEDNSTQWFHNESLISSQAS--------SYFIDAATVNDSGEYRCQTNL 75

Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPIS 167
                 S  + L V         P ++   EE+ +   C +       ++ ++ NGK   
Sbjct: 76  ST---LSDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK 131

Query: 168 QAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNV 214
               N           I      D+G+Y C        V  + V + +
Sbjct: 132 YFHHNS-------DFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 57.6 bits (139), Expect = 7e-10
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 42  KEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG 100
           + V      + L C  +  T L +  + ++G            ++     I      D G
Sbjct: 97  RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------HHNSDFHIPKATLKDSG 150

Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
           SY C    G     S ++++++
Sbjct: 151 SYFCRGLVGSKNVSSETVNITI 172

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score =  109 bits (275), Expect = 6e-29
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGDLKIT 275
            P I + P ++      T +L C+  G P P ++W+           R TI E G L+I 
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
           ++  +D+G YTC A +  G    S  L V E 
Sbjct: 68  NLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 95.2 bits (237), Expect = 1e-23
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-I 182
             P     P     A + T   +CKA+G P P I W+  G        +PR  +     +
Sbjct: 7   GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP--GRDPRATIQEQGTL 64

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA 218
            I+NLR SDTG Y C AT+S G       ++V    
Sbjct: 65  QIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 78.2 bits (193), Expect = 9e-18
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
            I   P +  +    +A  +C A  DP     I WL+         +PR       +L +
Sbjct: 10  IILQGPANQTLAVDGTALLKCKATGDP--LPVISWLKEGFTFP-GRDPRATIQEQGTLQI 66

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
                 D+G YTC A +        A L V 
Sbjct: 67  KNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSY 102
               +    L C   G PLP   W K+G      D R +    G +L IK++  SD G+Y
Sbjct: 19  TLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG-TLQIKNLRISDTGTY 77

Query: 103 TCEVSNGVGEAKSYSIDLSVLAA 125
           TC  ++  GE  S+S  L V  +
Sbjct: 78  TCVATSSSGET-SWSAVLDVTES 99

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score =  109 bits (274), Expect = 1e-28
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 208 KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTI 266
              + +    A  I   P+     +G++   +C   G P P V W+   + L+   R+ +
Sbjct: 4   HHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQV 63

Query: 267 LETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
             T      +I+ V  +D G Y+    N  G  +   +LT+++
Sbjct: 64  TTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 88.2 bits (219), Expect = 3e-21
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-- 177
                A     +P  +   E E+  F C   G P P + W+  G+ +S    + R +V  
Sbjct: 9   SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS---TSARHQVTT 65

Query: 178 --GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
               +   I +++ SD GNY     NS G    +  + +
Sbjct: 66  TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
                +     C   G P+P   W + G  ++ S R  ++   Y  +  I  V+ SD+G+
Sbjct: 25  TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGN 84

Query: 102 YTCEVSNGVGEAKSYSIDLSV 122
           Y+  V N  G+ ++    L++
Sbjct: 85  YSVVVENSEGKQEA-EFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF---VQSNDYS 365
            I  +P    V  G+SA F C+   +P    ++ WLR  + +   +  R          +
Sbjct: 16  RILTKPRSMTVYEGESARFSCDTDGEP--VPTVTWLRKGQVL--STSARHQVTTTKYKST 71

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
             ++     D G Y+   +      EA+ TLT+Q
Sbjct: 72  FEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score =  109 bits (274), Expect = 2e-28
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
              S      T E VPG V  L    +  ++  + W +P + NG+L GY+I ++    T 
Sbjct: 3   SGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTN 62

Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
                 R+ +     T   ++ GL   T Y I +A  T  G G  S 
Sbjct: 63  -----TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSA 104

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 21/107 (19%), Positives = 30/107 (28%), Gaps = 7/107 (6%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           VP     + +    I      VSW    P    G   GY++  W E +   +     +  
Sbjct: 17  VP-GPVGHLS-FSEILDTSLKVSWQE--PGEKNGILTGYRIS-WEEYNRTNTRVTHYL-P 70

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE-IISFVTPEGVPG 505
             +    V      +     V A      G  S   IS   P   P 
Sbjct: 71  NVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVPPSGPS 117

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score =  111 bits (279), Expect = 2e-28
 Identities = 40/183 (21%), Positives = 68/183 (37%), Gaps = 20/183 (10%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITI 184
               +EP +IN  +E++VT  C+ +  PE + I W HNG  I                  
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP---------SYR 55

Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF- 243
                +D+G Y C    +   +   V++ VL     + + P  E+   G+T++L C  + 
Sbjct: 56  FKANNNDSGEYTCQTGQT--SLSDPVHLTVL-FEWLVLQTPHLEFQE-GETIMLRCHSWK 111

Query: 244 GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQ-GSGSL 302
             P  +V +  N K                I     + SG+Y C              ++
Sbjct: 112 DKPLVKVTFFQNGKSQKFSH----LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTI 167

Query: 303 TVK 305
           TV+
Sbjct: 168 TVQ 170

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 98.4 bits (245), Expect = 6e-24
 Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 19/183 (10%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKITDV 277
             +   P     +   +V LTC+   +P+ + + W HN   +         T        
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT------HTQPSYRFKA 58

Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSL 337
              DSGEYTC       +      LTV     +  Q    E + G++   RC++  D  L
Sbjct: 59  NNNDSGEYTCQTGQTSLSD--PVHLTVLFEWLVL-QTPHLEFQEGETIMLRCHSWKDKPL 115

Query: 338 KLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL-DFIEAQATL 396
            + + + +  +   F          D + ++ +++   SG Y C        F     T+
Sbjct: 116 -VKVTFFQNGKSQKF-------SHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTI 167

Query: 397 TVQ 399
           TVQ
Sbjct: 168 TVQ 170

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 96.8 bits (241), Expect = 2e-23
 Identities = 33/168 (19%), Positives = 52/168 (30%), Gaps = 22/168 (13%)

Query: 50  KVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
            V L C            W  +G  I    +                 +D G YTC+   
Sbjct: 21  SVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------PSYRFKANNNDSGEYTCQTGQ 72

Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPIS 167
               + S  + L+VL        P  +   E ET+   C +    P  ++ +  NGK   
Sbjct: 73  T---SLSDPVHLTVLFEWLVLQTPH-LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK 128

Query: 168 QAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNV 214
            +  +P         +I     S +G+Y C           K V + V
Sbjct: 129 FSHLDP-------TFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 41  KKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQ 99
                   + + L C  +   PL +  + ++G     S      +   +  I     S  
Sbjct: 93  PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS------HLDPTFSIPQANHSHS 146

Query: 100 GSYTCEVSNGVGEAKSYSIDLSV 122
           G Y C  + G     S  + ++V
Sbjct: 147 GDYHCTGNIGYTLFSSKPVTITV 169

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  113 bits (285), Expect = 4e-28
 Identities = 50/298 (16%), Positives = 93/298 (31%), Gaps = 25/298 (8%)

Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
                L     + AP++    QV         W P +         GY+V+  T K+  G
Sbjct: 10  SGLEVLFQGPAIPAPTDLKFTQV-TPTSLSAQWTPPN-----VQLTGYRVR-VTPKEKTG 62

Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSL 510
            ++E+ +   +S++  V   + A+K    V A        P++ +            +  
Sbjct: 63  PMKEINLA-PDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLEN--VSPPRRA 119

Query: 511 EAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLA 570
                  +   + W         + G+++      G         +     P   S  + 
Sbjct: 120 RVTDATETTITISW---RTKTETITGFQVDAVPANGQ------TPIQRTIKPDVRSYTIT 170

Query: 571 GLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEH 630
           GL+P T Y+I+L         +            P N+    +TPN+L++SW   P    
Sbjct: 171 GLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQP-P---- 225

Query: 631 NAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGE 688
            A    Y I + +                 +E  +        Y I V+     +  E
Sbjct: 226 RARITGYIIKYEKPG-SPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSE 282

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 69.1 bits (169), Expect = 6e-13
 Identities = 30/257 (11%), Positives = 65/257 (25%), Gaps = 58/257 (22%)

Query: 487 YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKG 546
           ++   S  +  +           L+   +  ++   +W     PN  L GY+++    + 
Sbjct: 4   HHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQW---TPPNVQLTGYRVRVTPKEK 60

Query: 547 TKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG--AESKYLFYVPFKN 604
           T              P ++S  ++GL  +TKY + +           A+           
Sbjct: 61  TG-----PMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP 115

Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
           P       +T   + ISW              +++     N G+   Q  +         
Sbjct: 116 PRRARVTDATETTITISWRT-----KTETITGFQVDAVPAN-GQTPIQRTI--------- 160

Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
                                            K +  +  +    P +     +   N 
Sbjct: 161 ---------------------------------KPDVRSYTITGLQPGTDYKIYLYTLND 187

Query: 725 AYNGPPSEIISFVTPEG 741
                P  I +    + 
Sbjct: 188 NARSSPVVIDASTAIDA 204

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 30/181 (16%), Positives = 55/181 (30%), Gaps = 26/181 (14%)

Query: 327 FRCNAVSDPSLKLSIVWLRGSEPID-----------FESEPRFVQSNDYSLTVTKSSELD 375
            R    ++ ++ +S  W   +E I                 R ++ +  S T+T    L 
Sbjct: 119 ARVTDATETTITIS--WRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTIT---GLQ 173

Query: 376 SG-QYTCRAQTELDFIE-AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG 433
            G  Y     T  D    +   +     ++APSN   +        +VSW P      R 
Sbjct: 174 PGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLAT-TPNSLLVSWQPP-----RA 227

Query: 434 HFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 493
              GY +  + +         +   +   T   +    P ++    V+A        P  
Sbjct: 228 RITGYII-KYEKPGSPPR-EVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLI 285

Query: 494 I 494
            
Sbjct: 286 G 286

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score =  106 bits (266), Expect = 2e-27
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGD---- 271
           AP     P+ +  ++G +V L C++   P P++ W  N + +     R ++ +       
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT 311
           L I DV   D+G YT  A N+ G    +  L V    + T
Sbjct: 75  LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQT 114

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 94.4 bits (235), Expect = 3e-23
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 110 VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQA 169
           +G    +        AP F  +P+     E ++V  EC+ S +P P++ W  N + +   
Sbjct: 1   MGHHHHHH-SHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQ-- 57

Query: 170 PPNPRRKV-----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEIT 222
               R  +     G   + I+++ K D G Y  +A N  G    +  ++V A  P  T
Sbjct: 58  FNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA-RPNQT 114

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 81.7 bits (202), Expect = 8e-19
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 293 LGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF 352
           +G      S   K       +P+  +V  G S    C   + P     + W R +E + F
Sbjct: 1   MGHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIP--PPKLFWKRNNEMVQF 58

Query: 353 ESEPRFVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            ++   +  ++    +L +   ++ D+G YT  A  E         L V   
Sbjct: 59  NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGK-SLIIKHVEFSDQ 99
             L    V+L C     P P+  W ++   +  +     + Q N G+ +L+IK V   D 
Sbjct: 26  KVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDA 85

Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV 130
           G YT    N  G     +  L V A P  T+
Sbjct: 86  GWYTVSAVNEAGVTTC-NTRLDVTARPNQTL 115

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score =  108 bits (272), Expect = 3e-27
 Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 20/184 (10%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITI 184
               +EP++    E+++VT +C+ +  PE +   W HN   IS            +   I
Sbjct: 8   AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISS---------QASSYFI 58

Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG 244
           +     D+G Y C    S   +   V + V      + +AP+  +      + L C  + 
Sbjct: 59  DAATVDDSGEYRCQTQLS--TLSDPVQLEVH-IGWLLLQAPRWVFKE-EDPIHLRCHSWK 114

Query: 245 APKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG-SL 302
                +V ++ N K             D  I      DSG Y C               +
Sbjct: 115 NTALHKVTYLQNGKGRKYFH----HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQI 170

Query: 303 TVKE 306
           T+ +
Sbjct: 171 TITQ 174

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 90.3 bits (224), Expect = 7e-21
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 19/176 (10%)

Query: 233 GKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARN 291
             +V L C+   +P+ +   W HN+  ++       +     I      DSGEY C  + 
Sbjct: 22  KDSVTLKCQGAYSPEDQSTQWFHNESLISS------QASSYFIDAATVDDSGEYRCQTQL 75

Query: 292 KLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID 351
              +      L V     +   P     E       RC++  + +L   + +L+  +   
Sbjct: 76  STLSD--PVQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWKNTAL-HKVTYLQNGKGRK 131

Query: 352 FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL-DFIEAQATLTVQVPLEAPS 406
           +         ++    + K++  DSG Y CR      +       +T+   L   +
Sbjct: 132 Y-------FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 89.2 bits (221), Expect = 2e-20
 Identities = 31/181 (17%), Positives = 52/181 (28%), Gaps = 24/181 (13%)

Query: 50  KVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
            V L C    +P  Q+  W  +   I+            S  I      D G Y C+   
Sbjct: 24  SVTLKCQGAYSPEDQSTQWFHNESLISSQAS--------SYFIDAATVDDSGEYRCQTQL 75

Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPIS 167
                 S  + L V         P ++   EE+ +   C +       ++ ++ NGK   
Sbjct: 76  ST---LSDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK 131

Query: 168 QAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD---VYVNVLAHAPEITEA 224
               N           I      D+G+Y C        V  +   + +        I+  
Sbjct: 132 YFHHNS-------DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTISSF 184

Query: 225 P 225
            
Sbjct: 185 F 185

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 7/94 (7%)

Query: 42  KEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG 100
           + V      + L C  +  T L +  + ++G            ++     I      D G
Sbjct: 97  RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF------HHNSDFYIPKATLKDSG 150

Query: 101 SYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEF 134
           SY C    G     S ++ +++      +    F
Sbjct: 151 SYFCRGLVGSKNVSSETVQITITQGLAVSTISSF 184

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 12/92 (13%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
           +  +P+ Y V    S T +C     P    S  W      I          S   S  + 
Sbjct: 10  VFLEPQWYRVLEKDSVTLKCQGAYSPE-DQSTQWFHNESLI---------SSQASSYFID 59

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            ++  DSG+Y C+ Q     +     L V + 
Sbjct: 60  AATVDDSGEYRCQTQL--STLSDPVQLEVHIG 89

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score =  109 bits (272), Expect = 4e-27
 Identities = 37/210 (17%), Positives = 62/210 (29%), Gaps = 23/210 (10%)

Query: 119 DLSVLAAPYFTVEPE--FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK 176
           D         + +    +I   + +TV   C  S      +       P  +  P+  R 
Sbjct: 1   DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSL-CARYPEKRFVPDGNRI 58

Query: 177 VGPNR--ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEIT---EAPKDEYTV 231
              ++   TI +   S  G   C A  +       +Y+ V+                   
Sbjct: 59  SWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 118

Query: 232 DGKTVVLTCRVFGAPKPEVN--WIHNQKEL------------TGGRYTILETGDLKITDV 277
            G+ +VL C         ++  W +   +               G         L I  V
Sbjct: 119 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 178

Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
             +D G YTC A + L T + S  + V E 
Sbjct: 179 TRSDQGLYTCAASSGLMTKKNSTFVRVHED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score =  101 bits (253), Expect = 1e-24
 Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 20/202 (9%)

Query: 219 PEITEAPKDEYTV--DGKTVVLTCRVFGAPKPEVNWIHNQKELT----GGRYTILETGDL 272
             +++     Y      KTVV+ C         V+      E      G R +       
Sbjct: 8   ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITD----QPEDYEVEAGQSATFR 328
            I     + +G   C A+    + Q    + V     I D         E+  G+     
Sbjct: 67  TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126

Query: 329 CNAVSDPSLKLSIVWLRGSEPIDFES---------EPRFVQSNDYSLTVTKSSELDSGQY 379
           C A ++ ++ +   W   S     +              ++    +LT+   +  D G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186

Query: 380 TCRAQTELDFIEAQATLTVQVP 401
           TC A + L   +    + V   
Sbjct: 187 TCAASSGLMTKKNSTFVRVHED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 97.9 bits (243), Expect = 2e-23
 Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 15/189 (7%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDG-VPINPSDRISQGNYGKSLIIKHVEFSDQGSY 102
              +NK V + C+   + L  ++ ++       P       +  K   I     S  G  
Sbjct: 20  TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMV 79

Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPYFTV---EPEFINAAEEETVTFECKASGLPEP--EI 157
            CE        +S    + V+    + V       I  +  E +   C A        + 
Sbjct: 80  FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 139

Query: 158 HWVHNGKPISQAPPNPRRKVGP---------NRITIENLRKSDTGNYGCNATNSLGYVYK 208
           +W +            R              + +TI+ + +SD G Y C A++ L     
Sbjct: 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 199

Query: 209 DVYVNVLAH 217
             +V V   
Sbjct: 200 STFVRVHED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 310 ITDQPEDYEVEA--GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
           ++DQ     +     ++    C   S  +L +S+      +        R    +    T
Sbjct: 10  VSDQHGVVYITENKNKTVVIPCL-GSISNLNVSLCARYPEKRF-VPDGNRISWDSKKGFT 67

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
           +       +G   C A+   +  ++   + V V      
Sbjct: 68  IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 106

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score =  111 bits (278), Expect = 4e-27
 Identities = 53/348 (15%), Positives = 98/348 (28%), Gaps = 65/348 (18%)

Query: 399 QVPLEAPSNFTLIQVIDAKKA---VVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL 455
             P +APS +  I     +      + W  + P    G    Y+V        +  ++  
Sbjct: 2   DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTL---TRWKSHLQNY 58

Query: 456 IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPL 515
            VN      T++   +   +  A +   N       + +            V  L+A P 
Sbjct: 59  TVN-----ATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFP- 112

Query: 516 GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 575
             +  +++W     P   +  Y +++  V   K   + +           +     L  S
Sbjct: 113 KDNMLWVEW---TTPRESVKKYILEWC-VLSDKAPCITDWQQ-EDGTVHRTYLRGNLAES 167

Query: 576 TKYRIHLAGYTKAGDGAESKYLFYVPFKNPD---NVEGRGSTPNNLVISWTAMPEIEHNA 632
             Y I +      G G+      Y+    P     V  +    N  V+ W  +P    N 
Sbjct: 168 KCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNG 227

Query: 633 PHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIR 692
               Y IF+R   T         +D   +E  L++  +   Y +                
Sbjct: 228 FIRNYTIFYR---TIIGNETAVNVDSSHTEYTLSSLTSDTLYMV---------------- 268

Query: 693 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
                                    R+ A+         E  +F TP+
Sbjct: 269 -------------------------RMAAYTDEGGKDGPE-FTFTTPK 290

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 32/249 (12%), Positives = 61/249 (24%), Gaps = 64/249 (25%)

Query: 500 PEGVPGTVQSLE-AIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL 556
           P   P     ++ +   G     L W  + P + NG ++ Y++     K           
Sbjct: 4   PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH--------- 54

Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES----KYLFYVPFKNPDNVEGRG 612
             + + T  + KL     + +Y   L      G    +        +       +++   
Sbjct: 55  --LQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFP 112

Query: 613 STPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQ 672
              N L + WT   E        KY + W   +         + DW+Q            
Sbjct: 113 -KDNMLWVEWTTPRE-----SVKKYILEWCVLSDKA----PCITDWQQ------------ 150

Query: 673 PYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 732
                                   +     T        +      V        G P  
Sbjct: 151 -----------------------EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPES 187

Query: 733 IISFVTPEG 741
           I ++   + 
Sbjct: 188 IKAY-LKQA 195

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score =  104 bits (261), Expect = 6e-27
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTIL-ETGDLKITD 276
           AP  +   KD   ++G+  VL C V G P P + W+ N + +   R T      +L I D
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQD 70

Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
               D G YTC A N LG    S  +TV
Sbjct: 71  ALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 117 SIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK 176
           S    +  AP F+   +     E +    +C   G P P I W+ NG+PI  A      +
Sbjct: 3   SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR--STCE 60

Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
            G   + I++    D G Y C A N+LG V    +V V
Sbjct: 61  AGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 79.3 bits (196), Expect = 4e-18
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 299 SGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF 358
           SGS  ++     +   +D  V  GQ    +C+    P     I WL   +PI  +     
Sbjct: 3   SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTP--VPRITWLLNGQPI--QYARST 58

Query: 359 VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
            ++    L +  +   D G YTC A+  L  +   A +TV 
Sbjct: 59  CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
             +  +   L C   GTP+P+  W  +G PI  +    +      L I+     D G+YT
Sbjct: 22  AVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVA-ELHIQDALPEDHGTYT 80

Query: 104 CEVSNGVGEAKSYSIDLSV 122
           C   N +G+    S  ++V
Sbjct: 81  CLAENALGQVSC-SAWVTV 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score =  103 bits (259), Expect = 9e-27
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
            P I    +D             +  G P+P   W  + K +T GG+Y + E      L+
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           I     +DSG YTC  +N  G+   S  LT+K
Sbjct: 66  IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 87.3 bits (217), Expect = 5e-21
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV---- 177
           + + P      +    + +    F  KA+G P P   W  +GK I+      + K+    
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT---QGGKYKLSEDK 59

Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
           G   + I     SD+G Y C   NS G V     + + A
Sbjct: 60  GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
               +   +      G P P  IW+KDG  I    +  +S+   G  L I   + SD G 
Sbjct: 17  TVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGL 76

Query: 102 YTCEVSNGVGEAKSYSIDLSVLA 124
           YTC V N  G   S S  L++ A
Sbjct: 77  YTCTVKNSAGSVSS-SCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
            I    +D  V +   A F   A  +P  + + +W +  + I      ++  S D   + 
Sbjct: 8   VIVTGLQDTTVSSDSVAKFAVKATGEP--RPTAIWTKDGKAI--TQGGKYKLSEDKGGFF 63

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           L + K+   DSG YTC  +     + +   LT++
Sbjct: 64  LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  107 bits (269), Expect = 1e-26
 Identities = 39/222 (17%), Positives = 64/222 (28%), Gaps = 18/222 (8%)

Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
             Y   +   +       +  ++        P       G      C   + P    +I 
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQG-------PVAVYTWEGNQVNITCEVFAYP--SATIS 51

Query: 343 WLRGSEPIDFESEPRFVQSNDYS---LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           W R  + +   +       N  S   L VT  SE D G Y C A   +     +  L   
Sbjct: 52  WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH-FRGYKVQTWTE-KDGEGSIRELIV 457
               +PS   +     +  A V ++   P++  G     YK +     ++   S      
Sbjct: 112 DTPSSPSIDQVEPY--SSTAQVQFDE--PEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 167

Query: 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
                    +    P +    R+ A NG   G  S    F T
Sbjct: 168 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 88.3 bits (219), Expect = 4e-20
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 14/120 (11%)

Query: 193 GNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW 252
             Y   ++  +             +AP++ + P   YT +G  V +TC VF  P   ++W
Sbjct: 1   ATYAAASSALVP-------RGSHMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISW 52

Query: 253 IHNQKELTGG---RYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
             + + L         I  T     L++T  +  D G Y C A N++G       L   +
Sbjct: 53  FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 80.6 bits (199), Expect = 2e-17
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 24/148 (16%)

Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHW 159
            +Y    S  V          S + AP     P  +   E   V   C+    P   I W
Sbjct: 1   ATYAAASSALVPRG-------SHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISW 52

Query: 160 VHNGKPISQAPPNPRRKV------GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN 213
             +G+ +   P +    +        + + +    ++D GNY C A N +G    +  + 
Sbjct: 53  FRDGQLL---PSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109

Query: 214 VLAH--APEITEAPKDEYTVDGKTVVLT 239
                 +P I +           T  + 
Sbjct: 110 QADTPSSPSIDQV-----EPYSSTAQVQ 132

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR----ISQGNYG 86
             P   Y            +V + C     P     W +DG  +  S+     I      
Sbjct: 23  QGPVAVYT-------WEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA 75

Query: 87  KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
             L +     +D G+Y C   N +G+  S    L     P
Sbjct: 76  SYLEVTPDSENDFGNYNCTAVNRIGQE-SLEFILVQADTP 114

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score =  106 bits (265), Expect = 1e-26
 Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 20/188 (10%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPN 180
           V   P  ++ P +    + E VT  C  +   E     W HNG    +   +        
Sbjct: 1   VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-------- 52

Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
            + I N +  D+G Y C          + VY+ V +    +      E  ++G+ + L C
Sbjct: 53  -LNIVNAKFEDSGEYKCQHQQV--NESEPVYLEVFSDWLLLQ--ASAEVVMEGQPLFLRC 107

Query: 241 RVF-GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGS 299
             +      +V +  + + L        E  ++ IT+    DSG Y C  +      +  
Sbjct: 108 HGWRNWDVYKVIYYKDGEALK----YWYENHNISITNATVEDSGTYYCTGKVWQLDYESE 163

Query: 300 G-SLTVKE 306
             ++TV +
Sbjct: 164 PLNITVIK 171

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 98.8 bits (246), Expect = 5e-24
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 19/188 (10%)

Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKI 274
              P+++  P       G+ V LTC      +     W HN                L I
Sbjct: 2   PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNI 55

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSD 334
            +  F DSGEY C  +    +      L V     +  Q     V  GQ    RC+   +
Sbjct: 56  VNAKFEDSGEYKCQHQQVNESE--PVYLEVFSDWLLL-QASAEVVMEGQPLFLRCHGWRN 112

Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL-DFIEAQ 393
             +   +++ +  E + +          ++++++T ++  DSG Y C  +    D+    
Sbjct: 113 WDV-YKVIYYKDGEALKY-------WYENHNISITNATVEDSGTYYCTGKVWQLDYESEP 164

Query: 394 ATLTVQVP 401
             +TV   
Sbjct: 165 LNITVIKA 172

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 90.7 bits (225), Expect = 3e-21
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 29/182 (15%)

Query: 50  KVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
            V L C       +  T W  +G     ++         SL I + +F D G Y C+   
Sbjct: 21  NVTLTCNGNNFFEVSSTKWFHNGSLSEETNS--------SLNIVNAKFEDSGEYKCQHQQ 72

Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPIS 167
                +S  + L V +     ++       E + +   C         ++ +  +G+ + 
Sbjct: 73  V---NESEPVYLEVFSDW-LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK 128

Query: 168 QAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHAPEITEAPK 226
               N         I+I N    D+G Y C           + + + V        +AP+
Sbjct: 129 YWYENH-------NISITNATVEDSGTYYCTGKVWQLDYESEPLNITV-------IKAPR 174

Query: 227 DE 228
           ++
Sbjct: 175 EK 176

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 63.4 bits (154), Expect = 9e-12
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 30  RHAPKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKS 88
                   +    EV +  + + L C  +    + + I+ KDG  +             +
Sbjct: 82  EVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE------NHN 135

Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
           + I +    D G+Y C       + +S  ++++V+ AP
Sbjct: 136 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score =  103 bits (258), Expect = 2e-26
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 124 AAPYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
            APY+T    +E          TV F C A G P P + W+ NGK   Q       KV  
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 180 N--RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
               + +E++  SD GNY C   N  G +    +++V+
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 87.9 bits (218), Expect = 4e-21
 Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 9/98 (9%)

Query: 216 AHAPEITEAPKDE---YTV-DGKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTI 266
             AP  T   K E   + V    TV   C   G P P + W+ N KE       GG    
Sbjct: 2   KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61

Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
            +   L +  V  +D G YTC   N+ G+   +  L V
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 76.7 bits (189), Expect = 3e-17
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 29  NRHAP---KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI---SQ 82
           N+ AP     + + ++         V+  C  GG P+P   W K+G       RI     
Sbjct: 1   NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 60

Query: 83  GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
            N   SLI++ V  SD+G+YTC V N  G   +++  L V+
Sbjct: 61  RNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDVV 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 67.9 bits (166), Expect = 3e-14
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES--EPRFVQSNDYSLT 367
              +   + V A  +  FRC A  +P    ++ WL+  +    E       V++  +SL 
Sbjct: 11  EKMEKRLHAVPAANTVKFRCPAGGNP--MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 68

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
           +      D G YTC  + E   I     L V
Sbjct: 69  MESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  104 bits (261), Expect = 2e-26
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 10/142 (7%)

Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAH-----APEITEAPKDEYTVDGKTVVLTCRVF 243
           +  +G+   +  N+     +D ++  +A       P  T+   D   V+G      C+V 
Sbjct: 7   RKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVE 66

Query: 244 GAPKPEVNWIHNQKELT-GGRYTILETGD----LKITDVAFADSGEYTCFARNKLGTAQG 298
           G P PEV W  +   +     + I    +    L I++V   D  +YTC A N LG A  
Sbjct: 67  GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126

Query: 299 SGSLTVKEHTHITDQPEDYEVE 320
           +  L V+      +   + E +
Sbjct: 127 TAELLVETMGKEGEGEGEGEED 148

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 94.1 bits (234), Expect = 1e-22
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 12/145 (8%)

Query: 91  IKHVEFSDQGSYTCEVSNGVGEAKSY---SIDLSVLAAPYFTVEPEFINAAEEETVTFEC 147
           +   + S     +   +N V    ++     +      PYFT     +   E     F+C
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 148 KASGLPEPEIHWVHNGKPISQAPPNPRRKV-----GPNRITIENLRKSDTGNYGCNATNS 202
           K  G P+PE+ W  +  P+     +   ++     G   +TI  +   D   Y C A NS
Sbjct: 64  KVEGYPDPEVMWFKDDNPV---KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 120

Query: 203 LGYVYKDVYVNVLAHAPEITEAPKD 227
           LG       + V     +  E   +
Sbjct: 121 LGEATCTAELLVET-MGKEGEGEGE 144

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 78.0 bits (192), Expect = 4e-17
 Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI----TDQPEDYEVEAGQSATFRC 329
           ++    + S   +    NK+           +E  H+    T    D EV  G +A F C
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFV----QSNDYSLTVTKSSELDSGQYTCRAQT 385
                P     ++W +   P+  +    F     +  + SLT+++    D  +YTC+A  
Sbjct: 64  KVEGYP--DPEVMWFKDDNPV--KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN 119

Query: 386 ELDFIEAQATLTVQVPLEAPS 406
            L      A L V+   +   
Sbjct: 120 SLGEATCTAELLVETMGKEGE 140

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 31/137 (22%), Positives = 45/137 (32%), Gaps = 16/137 (11%)

Query: 21  ATGISASQNRHAPKQQYVTRKKEVA------LRNKKV------ELFCIFGGTPLPQTIWS 68
               +  +N  A  ++    K  V       + + +V         C   G P P+ +W 
Sbjct: 17  PINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWF 76

Query: 69  KDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
           KD  P+  S             SL I  V   D   YTC+  N +GEA   + +L V   
Sbjct: 77  KDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC-TAELLVETM 135

Query: 126 PYFTVEPEFINAAEEET 142
                        EEE 
Sbjct: 136 GKEGEGEGEGEEDEEEE 152

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score =  102 bits (256), Expect = 3e-26
 Identities = 29/95 (30%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD-- 271
           L HAP IT   +      G+       V   P  EV W HN  EL    +     T    
Sbjct: 5   LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL 64

Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
            L+I D    DSG Y     N  G A    +L V 
Sbjct: 65  TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 7/101 (6%)

Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-- 177
            ++  AP  T+          +   F       P  E+ W HNG  +     + +     
Sbjct: 3   FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQ---ESSKIHYTN 59

Query: 178 --GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
             G   + I +    D+G Y    TN  G       ++V  
Sbjct: 60  TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 48  NKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCE 105
            +           P  +  W  +GV +  S +   +  +   +L I      D G+Y   
Sbjct: 23  GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV 82

Query: 106 VSNGVGEAKSYSIDLSVLAAPY 127
            +N  GEA      L V    Y
Sbjct: 83  CTNYKGEASD-YATLDVTGGDY 103

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 67.7 bits (166), Expect = 5e-14
 Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 7/103 (6%)

Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
           G  T+     IT +   + V  GQ+  F  N  S P     + W      +  +   +  
Sbjct: 1   GPFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKP--TAEVKWYHNGVEL--QESSKIH 56

Query: 360 QSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
            +N     +L +      DSG Y              ATL V 
Sbjct: 57  YTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score =  103 bits (258), Expect = 3e-26
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 482 AFNGAYNGPPS-EIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIK 540
           +     +G PS   I   T + VPG    +    + +++  L W  P  PNG+++ Y+I 
Sbjct: 5   SSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQIT 64

Query: 541 YQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
           ++    T     +E L     P+       GL+P + Y   +   T+ G G  ++
Sbjct: 65  HRLNTTTANTATVEVLA----PSARQYTATGLKPESVYLFRITAQTRKGWGEAAE 115

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 5/102 (4%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           VP   P      +V       + W P  P +  G    Y++          +    ++  
Sbjct: 27  VP-GPPMGILFPEV-RTTSVRLIWQP--PAAPNGIILAYQITHRLNTTTANTATVEVLA- 81

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
             +         P S    R+ A      G  +E +   T +
Sbjct: 82  PSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK 123

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score =  103 bits (258), Expect = 2e-25
 Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 20/175 (11%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPIN-------------PSDRISQGNYGKSLI 90
                  V L C F      +    +  +                  +++  G       
Sbjct: 13  TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKA--LFH 70

Query: 91  IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS 150
           I  V+  D G Y C V  G        + +  + A Y  ++   +       V   C+A 
Sbjct: 71  IPSVQVRDSGQYRCLVICGAAWDYK-YLTV-KVKASYMRIDTRILEVPGTGEVQLTCQAR 128

Query: 151 GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE-NLRKSDTGNYGCNATNSLG 204
           G P  E+ W +   P + +  + R   G  ++T    L+   + N+ C   N+  
Sbjct: 129 GYPLAEVSWQNVSVPANTS--HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHM 181

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 12/107 (11%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF----------V 359
           +T   E Y V+ G S +  C+       +L    +R S                     +
Sbjct: 5   VTAPKEVYTVDVGSSVSLECDFDRRECTELE--GIRASLQKVENDTSLQSERATLLEEQL 62

Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
                   +      DSGQY C       +     T+ V+       
Sbjct: 63  PLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID 109

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score =  101 bits (254), Expect = 5e-26
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGD---L 272
            P    +  D+   +G+ V+++ RV G PKP V+W+ N++ +     R+     G    L
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           +I      D+G YTC A N+ G  Q    L V+
Sbjct: 65  RILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 85.0 bits (211), Expect = 4e-20
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-----G 178
           A P F V     +  E + V    +  G P+P + W+ N +P+    P+ RR       G
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVR---PDQRRFAEEAEGG 60

Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
             R+ I    + D G Y C A N  G    +  + V  
Sbjct: 61  LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
                  D  V  GQ          +P  K  + WLR  +P+    + RF +  +     
Sbjct: 7   TFKVSLMDQSVREGQDVIMSIRVQGEP--KPVVSWLRNRQPVR-PDQRRFAEEAEGGLCR 63

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           L +  +   D+G YTC+A  E    + +A L V+
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEFSDQG 100
                + V +     G P P   W ++  P+ P  R            L I   E  D G
Sbjct: 16  SVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAG 75

Query: 101 SYTCEVSNGVGEAKSYSIDLSVLA 124
            YTC+  N  G  +     L V  
Sbjct: 76  FYTCKAVNEYGARQC-EARLEVRG 98

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score =  104 bits (260), Expect = 7e-26
 Identities = 27/188 (14%), Positives = 52/188 (27%), Gaps = 23/188 (12%)

Query: 131 EPEFINAAEEETVTFECK--ASGLPEPEIHWVHNGKPI---------SQAPPNPRRKVGP 179
                  A  + +  +           +I W                         K+  
Sbjct: 5   NALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK 64

Query: 180 NR-ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
           N  + I++L+  D   Y  +  ++ G    +   ++           K + +       L
Sbjct: 65  NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER----VSKPKISWTCINTTL 120

Query: 239 TCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQG 298
           TC V     PE+N   + K L   +  I               S ++ C A NK+     
Sbjct: 121 TCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTS-------LSAKFKCTAGNKVSKESS 173

Query: 299 SGSLTVKE 306
              ++  E
Sbjct: 174 VEPVSCPE 181

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 92.3 bits (229), Expect = 9e-22
 Identities = 27/186 (14%), Positives = 51/186 (27%), Gaps = 31/186 (16%)

Query: 44  VALRNKKVELFC--IFGGTPLPQTIWSKDG------------VPINPSDRISQGNYGKSL 89
                + + L          +    W K                    D       G +L
Sbjct: 10  WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG-TL 68

Query: 90  IIKHVEFSDQGSYTCEVSNGVGEAK-SYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
            IKH++  DQ  Y   + +  G+       DL +          +   +      T  C+
Sbjct: 69  KIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-----SKPKISWTCINTTLTCE 123

Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK 208
                +PE++   +GK +  +           R+       S +  + C A N +     
Sbjct: 124 VMNGTDPELNLYQDGKHLKLSQ----------RVITHKWTTSLSAKFKCTAGNKVSKESS 173

Query: 209 DVYVNV 214
              V+ 
Sbjct: 174 VEPVSC 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 89.6 bits (222), Expect = 8e-21
 Identities = 24/198 (12%), Positives = 55/198 (27%), Gaps = 35/198 (17%)

Query: 220 EITEAPKDEYTVDGKTVVLTCRVF--GAPKPEVNWIHNQKELT-------------GGRY 264
           EIT    + +   G+ + L    F       ++ W     +                  Y
Sbjct: 2   EITN-ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTY 60

Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEA-GQ 323
            + + G LKI  +   D   Y     +  G         +     I ++    ++     
Sbjct: 61  KLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL----KIQERVSKPKISWTCI 116

Query: 324 SATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
           + T  C  ++       +   +  + +               +   K +   S ++ C A
Sbjct: 117 NTTLTCEVMNGT--DPELNLYQDGKHL----------KLSQRVITHKWTTSLSAKFKCTA 164

Query: 384 QTELDFIEAQATLTVQVP 401
             ++   +  +   V  P
Sbjct: 165 GNKVS--KESSVEPVSCP 180

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 10/83 (12%)

Query: 40  RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQ 99
            K +++       L C       P+    +DG  +  S R         +I      S  
Sbjct: 107 SKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR---------VITHKWTTSLS 157

Query: 100 GSYTCEVSNGVGEAKSYSIDLSV 122
             + C   N V +  S    +S 
Sbjct: 158 AKFKCTAGNKVSKESS-VEPVSC 179

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score =  100 bits (251), Expect = 1e-25
 Identities = 26/95 (27%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---- 271
            AP+I E  + +    G       RV G P PE  W  N  ++    R       D    
Sbjct: 4   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           L I DV   DS      A N  G       L V+ 
Sbjct: 64  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 8/97 (8%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----- 177
           + AP      +     +     F  +  G P+PE  W  NG  I     + R        
Sbjct: 3   MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE---RSDRIYWYWPED 59

Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
               + I ++   D+ +    A N  G      ++ V
Sbjct: 60  NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGK-SLIIKHVEFSDQG 100
              +           G P P+  W K+GV I  SDR            L+I+ V   D  
Sbjct: 16  TVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSA 75

Query: 101 SYTCEVSNGVGEAKS 115
           S   +  N  GE  S
Sbjct: 76  SIMVKAINIAGETSS 90

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 4/93 (4%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--YSL 366
            I ++ +   V  G  A FR   V  P       W +    I+      +    D    L
Sbjct: 7   KIFERIQSQTVGQGSDAHFRVRVVGKP--DPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
            +   +  DS     +A        + A L VQ
Sbjct: 65  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  100 bits (251), Expect = 2e-25
 Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGD---- 271
           AP      K     +G  V  TCRV G PKP++ W  + K+++     YTI    D    
Sbjct: 8   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           L  T     D G YT  A N  G    +G L V+ 
Sbjct: 68  LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 82.4 bits (204), Expect = 4e-19
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV------ 177
            AP+F ++ +     E   VTF C+ +G P+P+I+W  +GK IS   P            
Sbjct: 7   GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS---PKSDHYTIQRDLD 63

Query: 178 GPNRITIENLRKSDTGNYGCNATNSLG 204
           G   +        D GNY   A N  G
Sbjct: 64  GTCSLHTTASTLDDDGNYTIMAANPQG 90

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
               + + Y++  G   TF C    +P  K  I W +  + I  +S+   +Q +     S
Sbjct: 10  FFEMKLKHYKIFEGMPVTFTCRVAGNP--KPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
           L  T S+  D G YT  A      I     L VQ     PS+
Sbjct: 68  LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPSS 109

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 70.1 bits (172), Expect = 8e-15
 Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGK-SLIIKHVEFSDQ 99
                  V   C   G P P+  W KDG  I+P      I +   G  SL        D 
Sbjct: 19  KIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDD 78

Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPY 127
           G+YT   +N  G     +  L V A   
Sbjct: 79  GNYTIMAANPQGRISC-TGRLMVQAVNS 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score =  100 bits (250), Expect = 2e-25
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 211 YVNVLAH-APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILET 269
            + VL   AP IT   +++ T  G+++ ++C   G P P++ W  + + L      +L+ 
Sbjct: 2   QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61

Query: 270 GD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITD 312
           G+  L I  V   D G YTC A + LG A+      ++     T+
Sbjct: 62  GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 90.9 bits (226), Expect = 4e-22
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 118 IDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV 177
           + +    AP  T   E    +  E++   C ASG P P+I W  + + +     +    +
Sbjct: 3   LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL---VEDSGIVL 59

Query: 178 GPNRIT--IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITE 223
                   I  +RK D G Y C A + LG    + +  +   A E T 
Sbjct: 60  KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG-AQEKTN 106

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 85.5 bits (212), Expect = 3e-20
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
                + +E+ C   G P PQ +W KD   +     I   +  ++L I+ V   D+G YT
Sbjct: 21  TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYT 80

Query: 104 CEVSNGVGEAKSYSIDLSVLAAPYFT 129
           C+  + +G AK       +  A   T
Sbjct: 81  CQACSVLGCAKV-EAFFIIEGAQEKT 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 79.3 bits (196), Expect = 4e-18
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 302 LTVKEHT--HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
           LTV E     IT   E+     G+S    C A  +P     I+W + +E +  E     +
Sbjct: 3   LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNP--PPQIMWFKDNETLV-EDSGIVL 59

Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
           +  + +LT+ +  + D G YTC+A + L   + +A   ++   E  +
Sbjct: 60  KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score =  104 bits (261), Expect = 3e-25
 Identities = 48/236 (20%), Positives = 76/236 (32%), Gaps = 56/236 (23%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVF---GAPKPEVNWIH---------------NQKELT 260
           P +T +        G++V++ C V          V+W+                +   + 
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 261 GGRY---------TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT 311
            GR+         T    G L + DV  AD G YTC  R K  +      + +     + 
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV---LP 122

Query: 312 DQPEDYEVEAGQSATFRCNAVSDPSLKLSIV-WLRGS----------------EPIDFES 354
           ++P D  V  G +   RC+  S    +++ V W+  S                    F+S
Sbjct: 123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182

Query: 355 EPRF---------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
             RF         +  ND S+ +    E D G YTC              L V   
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score =   99 bits (248), Expect = 1e-23
 Identities = 38/264 (14%), Positives = 71/264 (26%), Gaps = 59/264 (22%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECK---ASGLPEPEIHWVHNGKPISQAP-------- 170
               P  TV    +     E+V   C            + W+ +      +         
Sbjct: 2   SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61

Query: 171 ---PNPRRKVGPNR----------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH 217
              P  R +   +           + +++++K+D G Y C        +     V +   
Sbjct: 62  LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV- 120

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPE---VNWIHNQKELTGGRYTILET----- 269
              + E P+D     G T  + C +    +     VNW+ +    T     +        
Sbjct: 121 ---LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177

Query: 270 -----------------------GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                                  G +K+  V  +D G YTC        ++ +  L V +
Sbjct: 178 GKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237

Query: 307 HTHITDQPEDYEVEAGQSATFRCN 330
                        + GQ      N
Sbjct: 238 DEFQRTISPTPPTDKGQQGILNGN 261

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 88.4 bits (218), Expect = 2e-19
 Identities = 33/248 (13%), Positives = 71/248 (28%), Gaps = 58/248 (23%)

Query: 44  VALRNKKVELFCIF---GGTPLPQTIWSKDGVPINPSDRISQGNYGK------------- 87
                + V + C+        + +  W       + S+ +                    
Sbjct: 16  RVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHL 75

Query: 88  ---------SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAA 138
                    SL+++ V+ +D+G YTCE+             + +   P     P  +   
Sbjct: 76  VGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESM-VMKKPVELWVLPEE---PRDLRVR 131

Query: 139 EEETVTFECKASGLPEPE---IHW---------------VHNGKPISQAPPNPRRK---- 176
             +T    C      E     ++W                 +     +     R +    
Sbjct: 132 VGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVD 191

Query: 177 ------VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYT 230
                      I ++ +++SD G Y C+         K + ++V+    + T +P    T
Sbjct: 192 LTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPP-T 250

Query: 231 VDGKTVVL 238
             G+  +L
Sbjct: 251 DKGQQGIL 258

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 56.0 bits (134), Expect = 9e-09
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 36/216 (16%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSN------ 362
           +T       V  G+S    C     +      + WL   +  D      F  SN      
Sbjct: 8   LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTG 67

Query: 363 ---------------DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
                          D SL +    + D G YTC  + + + +  +  + + V  E P +
Sbjct: 68  RFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD 127

Query: 408 FTLIQVIDAKK--AVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTT 465
             +      +   ++ S        +           W    G  +  E +++   +  +
Sbjct: 128 LRVRVGDTTQMRCSIQSTEEKRVTKV----------NWMFSSGSHTEEETVLSYDSNMRS 177

Query: 466 EVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
              + +   +N  RV           S  +  V   
Sbjct: 178 GKFQSLGRFRN--RVDLTGDISRNDGSIKLQTVKES 211

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 98.6 bits (246), Expect = 8e-25
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGD--- 271
              P   +AP D    +GK   + C+V G P P+++W  + K +     + +L   +   
Sbjct: 7   GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66

Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            L I  V   D+G YTC A N+ G    S  L V  
Sbjct: 67  SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-----G 178
             P+F   P  +   E +    +CK SGLP P++ W  +GKP+    P+   K+     G
Sbjct: 8   FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPV---RPDSAHKMLVRENG 64

Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
            + + IE +   D G Y C ATN  G     + + V A
Sbjct: 65  VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 75.1 bits (185), Expect = 1e-16
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV--QSNDYSL 366
           H    P D  V+ G+     C     P     + W    +P+  +S  + +  ++  +SL
Sbjct: 11  HFLQAPGDLTVQEGKLCRMDCKVSGLP--TPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
            +   +  D+G YTC A            L V      PS+
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPSS 109

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEFSDQGS 101
               K   + C   G P P   W  DG P+ P      + + N   SLII+ V   D G 
Sbjct: 21  VQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGI 80

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
           YTC  +N  G+    S++L V A  
Sbjct: 81  YTCIATNRAGQNSF-SLELVVAAKE 104

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  109 bits (272), Expect = 8e-25
 Identities = 59/408 (14%), Positives = 115/408 (28%), Gaps = 34/408 (8%)

Query: 356 PRFVQSNDYSLTVTKSSELD---SGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQ 412
           P   +++ ++    +S E+D   SG   C +       +   TL   VPL+         
Sbjct: 112 PAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELR-FT 170

Query: 413 VIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWT----EKDGEGSIRELIVNKGESTTTEVD 468
            + + +  V W+     ++      Y VQ           + +     V +      ++ 
Sbjct: 171 ELQSGQLEVKWSS--KFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLT 228

Query: 469 KFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG--------TVQSLEAIPLGSSAF 520
              P+     RV A N       +           P          + +      GS   
Sbjct: 229 DIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTV 288

Query: 521 YLKWVKPEQPNGVLMGYKIKY-QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
            + W  PE+P+  +  YK+ +   V    + P  ++    +D    S  L  L+P   Y 
Sbjct: 289 TIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYV 348

Query: 580 IHLAGYTKAGDG---AESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFK 636
           + L   T  G     +    L +      +N E    T    + +           P   
Sbjct: 349 VELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEV 408

Query: 637 YRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIV 696
              F++             + W+++E      PT   Y ++        +   +  E   
Sbjct: 409 GAPFYQDGQLQ------VKVYWKKTE-----DPTVNRYHVRWFPEACAHNRT-TGSEASS 456

Query: 697 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGGTK 744
                    +     + K    V       +     +     P    K
Sbjct: 457 GMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALK 504

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 83.1 bits (204), Expect = 1e-16
 Identities = 37/314 (11%), Positives = 79/314 (25%), Gaps = 38/314 (12%)

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPV 426
           ++  +S   +       +T    I+ Q     + P                +  V W   
Sbjct: 368 SLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT 427

Query: 427 SPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTT--EVDKFVPASKNFARVLAFN 484
                      Y V+ + E            + G +      +     + K    V    
Sbjct: 428 ED----PTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIR 483

Query: 485 GA---------YNGPPSEIISFVTPEGVPGTVQSLEAIP----------------LGSSA 519
                      +  PP   +   + + +    ++   +                   +  
Sbjct: 484 PKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNIT 543

Query: 520 FYLKWVKPEQP-NGVLMGYKIKYQSVKGT----KVGPLLERLPYISDPTTTSAKLAGLEP 574
            +  W   +      + G+++ +  V        +   +     I         +  L P
Sbjct: 544 GHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRP 603

Query: 575 STKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPH 634
           ST YR+ +   T  G+G  +   F  P   P +   R    +     +   PE  +  P 
Sbjct: 604 STLYRLEVQVLTPGGEGPATIKTFRTPELPPSSAH-RSHLKHRHPHHYKPSPE-RYGKPI 661

Query: 635 FKYRIFWRRHNTGE 648
               +      TG 
Sbjct: 662 PNPLLGLDSTRTGH 675

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 81.9 bits (201), Expect = 3e-16
 Identities = 62/519 (11%), Positives = 124/519 (23%), Gaps = 78/519 (15%)

Query: 281 DSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLK-- 338
            SG   C   N  G          K       +   +          + ++  + S++  
Sbjct: 134 CSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPV 192

Query: 339 ---LSIVWLRGSEPIDFESEP--RFVQSNDYSLTVTKSSELDSG-QYTCR--AQTEL--- 387
              +   W  G  P + ++       Q+ D  + +T    +     Y  R  A       
Sbjct: 193 IYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTD---IRPSRWYQFRVAAVNVHGTR 249

Query: 388 DFIEAQATLTVQVPLEAPSNFTLIQVIDAKKA-------VVSWNPVSPQSLRGHFRGYKV 440
            F              AP     +++ ++           + W+   P+        YKV
Sbjct: 250 GFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDL--PEEPDIPVHHYKV 307

Query: 441 QTWTEKDGEGSIRELIVNK-----GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE-- 493
             W+      S+      +     G   +  ++K  P       + A             
Sbjct: 308 -FWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAK 366

Query: 494 -IISFVTPEGVPGTVQ--------------------------SLEAIPLGSSAFYLKWVK 526
             + F +        Q                                 G     + W K
Sbjct: 367 VSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKK 426

Query: 527 PEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYT 586
               +  +  Y +++                           L  L  S KY++ +    
Sbjct: 427 T--EDPTVNRYHVRWFPEACAHNRTTGSE-ASSGMTHENYIILQDLSFSCKYKVTVQPIR 483

Query: 587 KAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNT 646
                      F  P      ++G+   P   +     +       P      F  +   
Sbjct: 484 PKSHSKAEAVFFTTPP--CSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVN 541

Query: 647 GEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELI----VNKGEST 702
                      W+ ++  L    T   +++   +  TE         +I    +   +  
Sbjct: 542 ITGH-----FSWKMAKANLYQPMT--GFQVTWAEVTTESRQNSLPNSIISQSQILPSDHY 594

Query: 703 TTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
              V    P++     V        GP +   +F TPE 
Sbjct: 595 VLTVPNLRPSTLYRLEVQVLTPGGEGPATI-KTFRTPEL 632

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score =  100 bits (251), Expect = 9e-25
 Identities = 23/186 (12%), Positives = 54/186 (29%), Gaps = 21/186 (11%)

Query: 131 EPEFINAAEEETVTFECKASGLPE--PEIHWVHNGKPISQA-------PPNPRRKVGPN- 180
           +   +  A    +        + +   E+ W      +++          +   ++  N 
Sbjct: 2   DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61

Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
            + I+NL + D+G Y     ++ G    +  +++           K     +     LTC
Sbjct: 62  DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM----VSKPMIYWECSNATLTC 117

Query: 241 RVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG 300
            V      E+     ++ L   R   +                 + C A N++       
Sbjct: 118 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTN-------LRAPFKCKAVNRVSQESEME 170

Query: 301 SLTVKE 306
            +   E
Sbjct: 171 VVNCPE 176

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 87.3 bits (216), Expect = 5e-20
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 30/182 (16%)

Query: 233 GKTVVLTCRVF--GAPKPEVNWIHNQKELT-----------GGRYTILETGDLKITDVAF 279
           G  + L    F       EV W      +             G + IL  GDLKI ++  
Sbjct: 11  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKL 339
            DSG Y     +  GT   + +L ++    ++ +P         +AT  C  +      +
Sbjct: 71  DDSGTYNVTVYSTNGTRILNKALDLRILEMVS-KPM--IYWECSNATLTCEVLEGT--DV 125

Query: 340 SIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
            +   +G E +           +    T++         + C+A   +   +      V 
Sbjct: 126 ELKLYQGKEHL----------RSLRQKTMSYQWTNLRAPFKCKAVNRVS--QESEMEVVN 173

Query: 400 VP 401
            P
Sbjct: 174 CP 175

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 77.3 bits (190), Expect = 1e-16
 Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 27/171 (15%)

Query: 55  CIFGGTPLPQTIWSKDGVPI----------NPSDRISQGNYGKSLIIKHVEFSDQGSYTC 104
                  + +  W +    +            S        G  L IK++   D G+Y  
Sbjct: 20  NFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG-DLKIKNLTRDDSGTYNV 78

Query: 105 EVSNGVGEA-KSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
            V +  G    + ++DL         V    I   E    T  C+     + E+      
Sbjct: 79  TVYSTNGTRILNKALDLR----ILEMVSKPMIY-WECSNATLTCEVLEGTDVELKLYQGK 133

Query: 164 KPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           + +              + T+     +    + C A N +    +   VN 
Sbjct: 134 EHLR----------SLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 17/119 (14%)

Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPI--------DFESEPRFVQSNDYSLTVTKSSE 373
           G                  + W RGS  +         F     F    +  L +   + 
Sbjct: 11  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 374 LDSGQYTCRAQTEL--DFIEAQATLTVQVPLEAP------SNFTLI-QVIDAKKAVVSW 423
            DSG Y     +      +     L +   +  P      SN TL  +V++     +  
Sbjct: 71  DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKL 129

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 6/82 (7%), Positives = 20/82 (24%), Gaps = 10/82 (12%)

Query: 41  KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG 100
           K  +        L C        +    +    +    +           + +   + + 
Sbjct: 103 KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------KTMSYQWTNLRA 153

Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
            + C+  N V +       ++ 
Sbjct: 154 PFKCKAVNRVSQESE-MEVVNC 174

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 97.8 bits (244), Expect = 1e-24
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD----L 272
            P   + P++    +G+   +  +V G P P+V+W  N + +     + ++ +      L
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
               V  +D+G Y C A+N+ G A  +  L V  
Sbjct: 65  IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 90.5 bits (225), Expect = 5e-22
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 8/99 (8%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----- 177
           +  P F   PE ++  E      + K SGLP P++ W  NG+ +     +   K+     
Sbjct: 3   MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQ---SDDLHKMIVSEK 59

Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
           G + +  E +R SD G Y C A N  G     V ++VLA
Sbjct: 60  GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEFSDQGS 101
               +   +     G P P   W  +G  +   D    I       SLI + V  SD G+
Sbjct: 17  IDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGA 76

Query: 102 YTCEVSNGVGEAKSYSIDLSVLA 124
           Y C   N  GEA   ++ L VLA
Sbjct: 77  YACVAKNRAGEATF-TVQLDVLA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 4/94 (4%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--YSL 366
                PE+  ++ G+           P     + W      +  +   + + S    +SL
Sbjct: 7   RFIQVPENMSIDEGRFCRMDFKVSGLP--APDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
                   D+G Y C A+           L V  
Sbjct: 65  IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  103 bits (258), Expect = 1e-24
 Identities = 44/288 (15%), Positives = 91/288 (31%), Gaps = 27/288 (9%)

Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
           +     + V  + P+    ++ +    A V W P              ++ +    GEG 
Sbjct: 6   SGGGGGIPVI-DGPTQIL-VRDVSDTVAFVEWTPPR-----AKVDFILLK-YGLVGGEGG 57

Query: 452 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLE 511
                +     +   V    P S+    + A  G      S    F T        ++L 
Sbjct: 58  KTTFRLQ-PPLSQYSVQALRPGSRYEVSISAVRGTNESDASST-QFTTE---IDAPKNLR 112

Query: 512 AIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAG 571
                +++  L+W   +        YK+ Y ++ G       E L       TT   L  
Sbjct: 113 VGSRTATSLDLEW---DNSEAEAQEYKVVYSTLAG---EQYHEVLVPKGIGPTTKTTLTD 166

Query: 572 LEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHN 631
           L P T+Y + ++    +     +         +P ++    S+  ++ + WT       +
Sbjct: 167 LVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWTK-A----S 221

Query: 632 APHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVV 679
            P   YRI +   +     + +  +   ++   L +      Y I + 
Sbjct: 222 GPIDHYRITFTPSSG---ISSEVTVPRDRTSYTLTDLEPGAEYIISIT 266

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 94.1 bits (234), Expect = 2e-21
 Identities = 46/277 (16%), Positives = 80/277 (28%), Gaps = 39/277 (14%)

Query: 332 VSDPSLKLSIVWLRGSEPIDF------------ESEPRFVQSNDYSLTVTKSSELDSG-Q 378
           VSD    +   W      +DF                  +Q      +V     L  G +
Sbjct: 26  VSDTVAFVE--WTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQ---ALRPGSR 80

Query: 379 YTCRAQTELDFIEAQA-TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRG 437
           Y           E+ A +      ++AP N   +    A    + W+           + 
Sbjct: 81  YEVSISAVRGTNESDASSTQFTTEIDAPKNLR-VGSRTATSLDLEWDNSE-----AEAQE 134

Query: 438 YKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF 497
           YKV   T    +     +    G +T T +   VP ++    + A   +    P+     
Sbjct: 135 YKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPAT---- 190

Query: 498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP 557
           +       + + L       ++  L W    + +G +  Y+I +    G           
Sbjct: 191 MNARTELDSPRDLMVTASSETSISLIW---TKASGPIDHYRITFTPSSGISS-------E 240

Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                  TS  L  LEP  +Y I +          ES
Sbjct: 241 VTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 24/201 (11%), Positives = 57/201 (28%), Gaps = 17/201 (8%)

Query: 491 PSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVG 550
              I        V      +    +  +  +++W     P   +    +KY  V G    
Sbjct: 2   SPGISGGGGGIPVIDGPTQILVRDVSDTVAFVEW---TPPRAKVDFILLKYGLVGGEG-- 56

Query: 551 PLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEG 610
               +  +   P  +   +  L P ++Y + ++      +   S   F      P N+  
Sbjct: 57  ---GKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRV 113

Query: 611 RGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQD-DVLDWRQSELVLANQP 669
              T  +L + W         A   +Y++ +      +             ++  L +  
Sbjct: 114 GSRTATSLDLEWDN-----SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLV 168

Query: 670 TFQPYEIKVVQTWTEKDGEGS 690
               Y + +       + + S
Sbjct: 169 PGTEYGVGI---SAVMNSKQS 186

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 27/182 (14%)

Query: 327 FRCNAVSDPSLKLS------------IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL 374
            R  + +  SL L             +V+   +     E             T+T   +L
Sbjct: 111 LRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLT---DL 167

Query: 375 DSG-QYTCRAQTELDFIEAQ-ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLR 432
             G +Y       ++  ++  AT+  +  L++P +  +          + W   S     
Sbjct: 168 VPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTAS-SETSISLIWTKAS----- 221

Query: 433 GHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPS 492
           G    Y++ T+T   G  S    +    + T+  +    P ++    + A  G      S
Sbjct: 222 GPIDHYRI-TFTPSSGISSE---VTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277

Query: 493 EI 494
            +
Sbjct: 278 TV 279

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score =  100 bits (250), Expect = 2e-24
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 42/199 (21%)

Query: 139 EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCN 198
           E+ +V   C         I W  +GK I     + ++        + +  K   G Y C 
Sbjct: 17  EDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKK------WNLGSNAKDPRGMYQCK 67

Query: 199 ATNSLGYVYKDVYVNVLAHA------------------------PEITEAPKDEYTV--D 232
            + +     +  Y    A                           E+    +  Y V   
Sbjct: 68  GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGDLKITDVAFA-DSGEYTCF 288
           G TV+LTC     P  E+ W HN K + G    +    +   L + + +    SG Y C+
Sbjct: 128 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 185

Query: 289 ARNKLGTAQGSGSLTVKEH 307
            R        +  L ++  
Sbjct: 186 PRGSKPEDA-NFYLYLRAR 203

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 91.5 bits (226), Expect = 4e-21
 Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 42/195 (21%)

Query: 50  KVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
            V L C           W KDG  I            K   +       +G Y C+ S  
Sbjct: 20  SVLLTC---DAEAKNITWFKDGKMIGFLTEDK-----KKWNLGSNAKDPRGMYQCKGSQN 71

Query: 110 VGEAKSY-----SIDLSVLAAPYFTVEPEFINAAEEE---------------------TV 143
             +         S D +   A       +     +                       TV
Sbjct: 72  KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131

Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK-SDTGNYGCNATNS 202
              C     P  EI W HN K I     +       + ++++   +   +G Y C    S
Sbjct: 132 ILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS 189

Query: 203 LG-----YVYKDVYV 212
                  Y+Y    V
Sbjct: 190 KPEDANFYLYLRARV 204

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 78.0 bits (191), Expect = 2e-16
 Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 38/180 (21%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
             +V+LTC    A    + W  + K +        +     +   A    G Y C     
Sbjct: 18  DGSVLLTC---DAEAKNITWFKDGKMIGFLT---EDKKKWNLGSNAKDPRGMYQCKGSQN 71

Query: 293 LGTA------QGSGSLTVKEHTHITDQPED--------------------YEVE-AGQSA 325
                      GS     K+     D  +D                    Y+V  +G + 
Sbjct: 72  KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131

Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL-DSGQYTCRAQ 384
              C           I+W    + I  + + + + S++  L++ + SEL  SG Y C  +
Sbjct: 132 ILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 64.1 bits (155), Expect = 8e-12
 Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 4/104 (3%)

Query: 21  ATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR- 79
                   + +           +V++    V L C     P  + +W  +   I   +  
Sbjct: 101 DDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDD 158

Query: 80  -ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
                +     + +  E    G Y C       E  ++ + L  
Sbjct: 159 KNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score =  100 bits (251), Expect = 2e-24
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 22/198 (11%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI------SQAPPNPRRKVGP-- 179
            T+E      AE+  V        L      W                P +     G   
Sbjct: 2   VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61

Query: 180 -NRIT--------IENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEY 229
             R           + +   D G Y  + T+      +  V  +V     +      +  
Sbjct: 62  SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT 121

Query: 230 TVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-TGGRYTILETGD-LKITDVAFADSGEYTC 287
             +  +V LTC         + W+ N + L    R T+ +    L+I  +   D+GEY C
Sbjct: 122 VKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC 180

Query: 288 FARNKLGTAQ-GSGSLTV 304
              N +   +  S  L +
Sbjct: 181 EISNPVSVRRSNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 99.7 bits (248), Expect = 5e-24
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 28/190 (14%)

Query: 49  KKVELFCIFGGTPLPQTIWSKDGVPINP-------------------SDRISQGNYGKSL 89
             V L        L    W K                          S R    + G SL
Sbjct: 15  NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG-SL 73

Query: 90  IIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV-LAAPYFTVEPEFINAAEEETVTFECK 148
           + + +   D G YT ++++        ++   V        ++       E ++VT  C 
Sbjct: 74  LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133

Query: 149 ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--RITIENLRKSDTGNYGCNATNSLGYV 206
           ++      I W+ N + +       R  +  N   + I+ +++ D G Y C  +N +   
Sbjct: 134 SND-IGANIQWLFNSQSL---QLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR 189

Query: 207 YKD-VYVNVL 215
             + + ++++
Sbjct: 190 RSNSIKLDII 199

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 99.0 bits (246), Expect = 1e-23
 Identities = 34/205 (16%), Positives = 55/205 (26%), Gaps = 27/205 (13%)

Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG------------------ 261
           E+T         +   V+L             W                           
Sbjct: 1   EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60

Query: 262 --GRYTILETGDLKITDVAFADSGEYTCFARNKLG-TAQGSGSLTVKEH-THITDQPEDY 317
             GR  I   G L    +   D G YT    ++     Q +    V +  T    Q  + 
Sbjct: 61  YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT 120

Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSG 377
            V+   S T  C +        +I WL  S+ +         Q+N   L +      D+G
Sbjct: 121 TVKELDSVTLTCLSNDIG---ANIQWLFNSQSLQLTERMTLSQNNS-ILRIDPIKREDAG 176

Query: 378 QYTCRAQTELDFIEAQ-ATLTVQVP 401
           +Y C     +    +    L +   
Sbjct: 177 EYQCEISNPVSVRRSNSIKLDIIFD 201

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 85.5 bits (211), Expect = 4e-19
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI 90
               Q ++            V L C+          W  +   +  ++R++       L 
Sbjct: 108 QPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILR 166

Query: 91  IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT 129
           I  ++  D G Y CE+SN V   +S SI L ++  P+  
Sbjct: 167 IDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH 205

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score =  106 bits (264), Expect = 5e-24
 Identities = 48/318 (15%), Positives = 85/318 (26%), Gaps = 30/318 (9%)

Query: 295 TAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR-GSEPIDFE 353
               + SL     T +           G+     C    +  + +     + G E ++  
Sbjct: 221 AGSDAPSLATVAGTCV---DHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDA 277

Query: 354 SEPRFVQSNDYSLTVTKSSEL-------DSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
            +        +  + +   E          G  +C  +                   +  
Sbjct: 278 CQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAP 337

Query: 407 NFTLIQVIDAKKAVVSWNPVSPQSLRGHF-RGYKVQ-------TWTEKDGEGSIRELIVN 458
           ++ L  V    K  + W P  PQ   G     Y V        +      E S+R     
Sbjct: 338 HY-LTAVGMGAKVELRWTP--PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPP 394

Query: 459 KGESTTT-EVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGS 517
            G + T+  V    P       V A NG      S      +          +      +
Sbjct: 395 HGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRST 454

Query: 518 SAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK 577
           ++  + W  P      +  Y++ Y+                +      S  L  L P T 
Sbjct: 455 TSLSVSWSIPPPQQSRVWKYEVTYRKKGD-------SNSYNVRRTEGFSVTLDDLAPDTT 507

Query: 578 YRIHLAGYTKAGDGAESK 595
           Y + +   T+ G GA SK
Sbjct: 508 YLVQVQALTQEGQGAGSK 525

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 75.2 bits (184), Expect = 2e-14
 Identities = 42/265 (15%), Positives = 77/265 (29%), Gaps = 59/265 (22%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQ----- 542
               +  + +     P     L A+ +G+    L+W  P+   G   + Y +  +     
Sbjct: 319 FRAPQDPASMPCTRPPSAPHYLTAVGMGAKVE-LRWTPPQDSGGREDIVYSVTCEQCWPE 377

Query: 543 SVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPF 602
           S +       +         T TS  ++ LEP   Y   +           S+       
Sbjct: 378 SGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASV 437

Query: 603 KN----PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDW 658
                 P  V   G +  +L +SW+  P     +  +KY + +R+     ++N       
Sbjct: 438 SINQTEPPKVRLEGRSTTSLSVSWSI-PP-PQQSRVWKYEVTYRKKGDSNSYN------- 488

Query: 659 RQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR 718
                                                V + E  +  +D   P +    +
Sbjct: 489 -------------------------------------VRRTEGFSVTLDDLAPDTTYLVQ 511

Query: 719 VLAFNGAYNGPPSEIISFVT--PEG 741
           V A      G  S++  F T  PEG
Sbjct: 512 VQALTQEGQGAGSKVHEFQTLSPEG 536

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 52.1 bits (124), Expect = 4e-07
 Identities = 55/310 (17%), Positives = 86/310 (27%), Gaps = 35/310 (11%)

Query: 216 AHAPEITEAPKDEYTVDGKTVVLT--CRVFGAPKPEVNWIHNQKELTGGRYTILETGDLK 273
           A  P   E P+    VDG+ +V    C      +   +                      
Sbjct: 239 AVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLEC 298

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEA-GQSATFRCNAV 332
                 +  G  +C        A    +      T     P        G     R    
Sbjct: 299 PEHTLPSPEGATSCECEEGFFRAPQDPASMP--CTRPPSAPHYLTAVGMGAKVELRWTPP 356

Query: 333 SDP--------SLKLSIVWLRGSEPIDFESEPRFVQ----SNDYSLTVTKSSELDSG-QY 379
            D         S+     W    E    E+  R+ +        S+TV+    L+    Y
Sbjct: 357 QDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSD---LEPHMNY 413

Query: 380 TCR--AQT---ELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH 434
           T    A+     L    +  T +V +    P    L          VSW+   P   +  
Sbjct: 414 TFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGR-STTSLSVSWSI--PPPQQSR 470

Query: 435 FRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 494
              Y+V  + +K    S     V + E  +  +D   P +    +V A      G  S++
Sbjct: 471 VWKYEVT-YRKKGDSNSYN---VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKV 526

Query: 495 ISFVT--PEG 502
             F T  PEG
Sbjct: 527 HEFQTLSPEG 536

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 94.4 bits (235), Expect = 1e-23
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 117 SIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK 176
           S   S L      VEPE    A   TVT  C+    P P+IHW+ +G P+   P      
Sbjct: 2   SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------ 55

Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP 219
                + +  +   D G Y C AT+S     +   V++    P
Sbjct: 56  --SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 84.8 bits (210), Expect = 4e-20
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277
             ++   P+      G TV LTC V   P P+++W+ +     G    +  +  L + ++
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD-----GVPLPLPPSPVLILPEI 64

Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTV 304
              D G Y+C A +     Q S ++++
Sbjct: 65  GPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 298 GSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPR 357
           GS   +  E   +  +PE   V  G + T  C   + P     I W++   P+       
Sbjct: 1   GSSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQP--SPQIHWMKDGVPLP------ 52

Query: 358 FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
                   L + +    D G Y+C A       +    +++ +
Sbjct: 53  --LPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 63.6 bits (155), Expect = 9e-13
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
           V L C     P PQ  W KDGVP+              LI+  +   DQG+Y+C  ++  
Sbjct: 28  VTLTCEVPAQPSPQIHWMKDGVPLPLPP-------SPVLILPEIGPQDQGTYSCVATHSS 80

Query: 111 GEAK-SYSIDLSVLA 124
              + S ++ +S++ 
Sbjct: 81  HGPQESRAVSISIIE 95

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 8/110 (7%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
              S  +       +PG   +L A     ++  + W  P   NG +  YK+ Y      K
Sbjct: 3   SGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDK 62

Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF 598
                       D ++ S  + GL+  T+Y   +  Y K G G  +  + 
Sbjct: 63  E--------QDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVA 104

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 394 ATLTVQVPLEAPSNFTLIQVID--AKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
             +  Q  ++ P     ++          V+W    P S  G  + YK+  + EK  +  
Sbjct: 7   GRVETQPEVQLPGPAPNLRAYAASPTSITVTWET--PVSGNGEIQNYKLY-YMEKGTD-- 61

Query: 452 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
            +E  V+   S +  ++     ++   RV+A+N    G  +  ++  T     
Sbjct: 62  -KEQDVD-VSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 94.3 bits (235), Expect = 3e-23
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
            P+I + P+D+    G++V L  +V G       W+  +K++       +  + +   L 
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           I        G YT    NKLG+ Q   +LTV +
Sbjct: 67  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 83.9 bits (208), Expect = 1e-19
 Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 10/110 (9%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GP 179
           + P     PE       E+V    K +G       W+   K I     +   KV      
Sbjct: 6   SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQ---ESEHMKVENSENG 62

Query: 180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH--APEIT-EAPK 226
           +++TI   R+   G Y     N LG     V + V+     P  T   P 
Sbjct: 63  SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTPSGPS 112

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
                + VELF    GT      W K    I  S+   +     G  L I        G 
Sbjct: 18  KVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGC 77

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
           YT  V N +G  ++  ++L+V+  P
Sbjct: 78  YTLLVENKLGSRQA-QVNLTVVDKP 101

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 73.5 bits (181), Expect = 6e-16
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND-YSLT 367
            I   PED +V AG+S              ++  W++  + I      +   S +   LT
Sbjct: 9   QIIQFPEDQKVRAGESVELFGKVTGTQ--PITCTWMKFRKQIQESEHMKVENSENGSKLT 66

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
           +  + +   G YT   + +L   +AQ  LTV    + P+
Sbjct: 67  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 105

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 94.0 bits (234), Expect = 5e-23
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 489 GPPSEIISFVTPEGVPGTV-QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
              S  +   T E  P +  + ++A  L S+   ++W +PE+PNG + GY++ Y      
Sbjct: 3   SGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQ 62

Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
            V   ++         +    +  L P   Y + +  +T  GDG  S
Sbjct: 63  HVNNWMKHNV----ADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLS 105

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 68.2 bits (167), Expect = 6e-14
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
           Q P  AP +    +++ +   +V W    P+   G  +GY+V    +     +   +  N
Sbjct: 16  QAPSSAPRDVQ-ARMLSSTTILVQWKE--PEEPNGQIQGYRVYYTMDPTQHVN-NWMKHN 71

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
             +S  T +   VP      +VLAF    +GP S  I  +T  G  
Sbjct: 72  VADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 674 YEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 733
           Y +     +T    +     +  N  +S  T +   VP      +VLAF    +GP S  
Sbjct: 52  YRVY----YTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107

Query: 734 ISFVTPEG 741
           I  +T  G
Sbjct: 108 IQVITQTG 115

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 92.4 bits (230), Expect = 7e-23
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELT-GGRYTILETGD---L 272
              ++         +G  V   C++    +  +V W    ++L    +Y I        L
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
            + D+   D G Y C   N  G       L VK
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 69.7 bits (171), Expect = 7e-15
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSL 366
           ++ Q      E G    + C   +       + W  G   +  E+  ++  + +     L
Sbjct: 4   VSGQIMHAVGEEGGHVKYVCKIENYDQ-STQVTWYFGVRQL--ENSEKYEITYEDGVAIL 60

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
            V   ++LD G Y C+   +     + A L V+
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKV----GP 179
               + +       E   V + CK     +  ++ W    + +     + + ++    G 
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLE---NSEKYEITYEDGV 57

Query: 180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
             + ++++ K D G Y C   N  G       + V
Sbjct: 58  AILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 44  VALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQG 100
           V      V+  C          + W      +  S++  I+  +    L +K +   D G
Sbjct: 12  VGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDG 71

Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
           +Y C+V N  GE  S   +L V
Sbjct: 72  TYRCKVVNDYGEDSS-YAELFV 92

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 93.2 bits (232), Expect = 1e-22
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 489 GPPSEIISFVTPEGVP-GTVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVK 545
              S  I   T +  P    Q +  + +GS+   + WV P  +  NGV+  Y + Y++V 
Sbjct: 3   SGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVD 62

Query: 546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY-----V 600
           G         +        +S  L GLE  T+YR+ +  +T  G G ES  +       V
Sbjct: 63  GE---DRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDV 119

Query: 601 PFKNPDNVEGRGS 613
           P   P  VE   S
Sbjct: 120 PSGPPRKVESGPS 132

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 79.3 bits (196), Expect = 8e-18
 Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 2/117 (1%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
            P   P        + +    VSW P    S  G    Y V        +     +    
Sbjct: 17  TPSAPPQKVMC-VSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGIS 75

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT-VQSLEAIPL 515
            E ++ ++      ++    V A      GP S  +   T E VP    + +E+ P 
Sbjct: 76  REHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPS 132

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 18/158 (11%), Positives = 34/158 (21%), Gaps = 45/158 (28%)

Query: 589 GDGAESKYLF-----YVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRR 643
           G    S  +        P   P  V         + +SW   P    N    +Y + +  
Sbjct: 1   GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60

Query: 644 HNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTT 703
            +  +                                             +     E ++
Sbjct: 61  VDGEDRGR----------------------------------------HVVDGISREHSS 80

Query: 704 TEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
            ++      ++    V A      GP S  +   T E 
Sbjct: 81  WDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDED 118

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 91.6 bits (228), Expect = 1e-22
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
            P+I  A +      G T  L     GAP P   W              +        + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
                 ADSG Y    +N+LG  +    + V+
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 80.8 bits (200), Expect = 9e-19
 Identities = 20/94 (21%), Positives = 26/94 (27%), Gaps = 7/94 (7%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GPN 180
            P        I      T   E    G P+P   W             P   V       
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGA---ALAPELLVDAKSSTT 58

Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
            I   + +++D+GNY     N LG       V V
Sbjct: 59  SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 49  KKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCEV 106
               L   F G P P   W+        +    +   +   S+     + +D G+Y  +V
Sbjct: 18  FTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKV 77

Query: 107 SNGVGEAKSYSIDLSV 122
            N +GE ++   ++ V
Sbjct: 78  KNELGEDEA-IFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF---VQSNDYSL 366
           I       +++AG +     + +  P    +  W  G         P      +S+  S+
Sbjct: 5   ILTASRKIKIKAGFTHNLEVDFIGAP--DPTATWTVGDSGA--ALAPELLVDAKSSTTSI 60

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
               +   DSG Y  + + EL   EA   + VQ
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           +P+ AP N   + V+++  A V W+PV  +S+RGH +GY++  W  +      R  I  K
Sbjct: 13  LPMVAPGNVR-VNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71

Query: 460 -----GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
                G  T   +    P S     V   NG   GP S    F TPEG   
Sbjct: 72  ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGP 122

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 492 SEIISFVTPEGVP-GTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSV--KG 546
           S   S  + E +P     ++    + S+   + W  V  +   G L GY+I Y       
Sbjct: 2   SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61

Query: 547 TKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
            +    +E+       + T   L GLEP + Y +++      G+G  S 
Sbjct: 62  KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASP 110

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 25/142 (17%), Positives = 40/142 (28%), Gaps = 35/142 (24%)

Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
           +P   P NV           + W  +P          YRI++ +  +    N+  +    
Sbjct: 13  LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHI---- 68

Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 719
                                           ++++  +G  T   +    P S     V
Sbjct: 69  -------------------------------EKKILTFQGSKTHGMLPGLEPFSHYTLNV 97

Query: 720 LAFNGAYNGPPSEIISFVTPEG 741
              NG   GP S    F TPEG
Sbjct: 98  RVVNGKGEGPASPDRVFNTPEG 119

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 92.0 bits (229), Expect = 2e-22
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 480 VLAFNGAYNGPPSEIISFVTPEGVP-GTVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMG 536
             + N    G  ++ I+ VT   VP    Q++    + S +  + W+ P     NG + G
Sbjct: 4   GSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITG 63

Query: 537 YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
           YKI+++                  +P        GLE  ++Y   ++  T  G G  S
Sbjct: 64  YKIRHRKTTRRGE-------METLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS 114

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 73.9 bits (182), Expect = 6e-16
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           VP   P N + ++V++++   VSW P    +  G   GYK++            E+   +
Sbjct: 27  VPSAPPQNVS-LEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHR----KTTRRGEMETLE 81

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
             +           S+   +V A      GPPS   +  TPE
Sbjct: 82  PNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 25/163 (15%), Positives = 40/163 (24%), Gaps = 49/163 (30%)

Query: 583 AGYTKAGDGAESKYLF-----YVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKY 637
           +   + G G  +  +       VP   P NV        ++ +SW   P    N     Y
Sbjct: 5   SSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGY 64

Query: 638 RIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVN 697
           +I  R+                                                 E+   
Sbjct: 65  KIRHRKTTRRG--------------------------------------------EMETL 80

Query: 698 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
           +  +           S+   +V A      GPPS   +  TPE
Sbjct: 81  EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 91.6 bits (227), Expect = 4e-22
 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 23/130 (17%)

Query: 193 GNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW 252
           G+   +  +S G V +       +H     +AP  +    G +V L C   G+P PE+ W
Sbjct: 2   GSSHHHHHHSSGLVPRG------SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQW 55

Query: 253 IHNQKELT-----------------GGRYTILETGDLKITDVAFADSGEYTCFARNKLGT 295
               +                       Y       + I  +   D+G Y C A N    
Sbjct: 56  WFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDR 115

Query: 296 AQGSGSLTVK 305
              + +  VK
Sbjct: 116 NHLTRAPRVK 125

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 82.8 bits (204), Expect = 7e-19
 Identities = 25/119 (21%), Positives = 37/119 (31%), Gaps = 20/119 (16%)

Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHW 159
           GS      +  G      +         F   P         +V   C+A G P PEI W
Sbjct: 2   GSSHHHHHHSSG------LVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQW 55

Query: 160 VHNGKPISQAPPNPRRKVGPNRI--------------TIENLRKSDTGNYGCNATNSLG 204
              G+  +            +R+              +I+ L + DTG Y C A+N   
Sbjct: 56  WFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 65.0 bits (158), Expect = 1e-12
 Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 22/144 (15%)

Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
           G       +  G       +           P   +   G S    C AV  P     I 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMAG-----FVQAPLSQQRWVGGSVELHCEAVGSP--VPEIQ 54

Query: 343 WLRGSEPIDFES--------------EPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELD 388
           W    +  +                    + Q    ++++    E D+G Y CRA  + D
Sbjct: 55  WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114

Query: 389 FIEAQATLTVQVPLEAPSNFTLIQ 412
                    V+  + A +   +++
Sbjct: 115 RNHLTRAPRVKW-VRAQAVVLVLE 137

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 16/94 (17%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS---------------DRISQGNYGKS 88
                  VEL C   G+P+P+  W  +G   N                       +   +
Sbjct: 32  QRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAAST 91

Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
           + I  +   D G+Y C  SN        +    V
Sbjct: 92  ISIDTLVEEDTGTYECRASNDPDRN-HLTRAPRV 124

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 97.6 bits (242), Expect = 1e-21
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 17/281 (6%)

Query: 301 SLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ 360
            ++    +     P+D  +  G   TF C +        +++       I  + E   ++
Sbjct: 192 QISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLS--ALIGHTNCPLIHLDGENVAIK 249

Query: 361 SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAV 420
             + S          S           +       +    P + P      +  D K+ +
Sbjct: 250 IRNIS---------VSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLN-CETHDLKEII 299

Query: 421 VSWNPVSPQSLRGHFR-GYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR 479
            SWNP    +L G     Y +   +       ++       ES                 
Sbjct: 300 CSWNPGRVTALVGPRATSYTLV-ESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFT 358

Query: 480 VLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKI 539
           + A N       + +++ +T +  P T  S +   + S+A  L W  P     +    +I
Sbjct: 359 LNAHNPLGRSQSTILVN-ITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEI 417

Query: 540 KYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 580
           + +     +            + ++    L  L P T Y  
Sbjct: 418 EIKKSNSVQ--EQRNVTIQGVENSSYLVALDKLNPYTLYTF 456

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 62.2 bits (150), Expect = 3e-10
 Identities = 37/290 (12%), Positives = 75/290 (25%), Gaps = 24/290 (8%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
           P+D+  + G  +   C         +    N   +       L+  ++ I     + S  
Sbjct: 205 PQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIH------LDGENVAIKIRNISVSAS 258

Query: 285 YTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC--NAVSDPSLKLS-- 340
                            +         D P+    E        C  N     +L     
Sbjct: 259 SGTNVVFTTEDNIFGTVIFAGY---PPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRA 315

Query: 341 ---IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA--QAT 395
               +    S             +  Y L        +   +T  A   L   ++     
Sbjct: 316 TSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVN 375

Query: 396 LTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL 455
           +T +V    P++F +   I++    +SW+   P +        +++       +      
Sbjct: 376 ITEKVYPHTPTSFKVK-DINSTAVKLSWHL--PGNFAKINFLCEIEIKKSNSVQEQRNVT 432

Query: 456 IVN-KGESTTTEVDKFVPASKNFARVLA--FNGAYNGPPSEIISFVTPEG 502
           I   +  S    +DK  P +    R+             S     +T E 
Sbjct: 433 IQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHLTTEA 482

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 28/252 (11%), Positives = 55/252 (21%), Gaps = 49/252 (19%)

Query: 496 SFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 555
           + +     P T Q L             W  P +   ++      Y  V+      +  +
Sbjct: 274 TVIFAGYPPDTPQQLNCETHDLKEIICSW-NPGRVTALVGPRATSYTLVESFSGKYVRLK 332

Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF----YVPFKNPDNVEGR 611
                   +       L     Y   L  +   G   +S  L      V    P + + +
Sbjct: 333 RAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRS-QSTILVNITEKVYPHTPTSFKVK 391

Query: 612 GSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSE--LVLANQP 669
                 + +SW           +F   I  ++ N+ +      +     S   + L    
Sbjct: 392 DINSTAVKLSWHLPGNFAKI--NFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLN 449

Query: 670 TFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGP 729
            +  Y  ++                                       R           
Sbjct: 450 PYTLYTFRI---------------------------------------RCSTETFWKWSK 470

Query: 730 PSEIISFVTPEG 741
            S     +T E 
Sbjct: 471 WSNKKQHLTTEA 482

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 54.1 bits (129), Expect = 1e-07
 Identities = 41/351 (11%), Positives = 89/351 (25%), Gaps = 41/351 (11%)

Query: 351 DFESEPRFVQSNDYSLTVTKSSELDSGQYTCR--AQTELDFIEAQATLTVQ----VPLEA 404
           +   E R         T  K   L  G Y     +  +     ++ TL  Q    +P + 
Sbjct: 29  EVCIEQRSRSCYQLEKTSIKIPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLIP-DT 87

Query: 405 PSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGEST- 463
           P    L          + WN             ++++    K+    ++ +      +  
Sbjct: 88  PEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIK-VLRKESMELVKLVTHQTTLNGK 146

Query: 464 ------TTEVDKFVPASKNFARVLAFNGAYNGP-PSEIISFVTPEGVPGTVQSLEA---- 512
                 +   D  +  + +F  +  +    +     E   +   + +     S       
Sbjct: 147 DTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQ 206

Query: 513 ---IPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKL 569
              I +GS       V  E+    L+G+                       D    + K+
Sbjct: 207 DKVILVGSD-ITFCCVSQEKVLSALIGHT---------------NCPLIHLDGENVAIKI 250

Query: 570 AGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIE 629
             +  S     ++   T+        +  Y P   P  +         ++ SW       
Sbjct: 251 RNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDT-PQQLNCETHDLKEIICSWNPGRVTA 309

Query: 630 HNAPHF-KYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVV 679
              P    Y +            + +       +L+    P  + Y   + 
Sbjct: 310 LVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLN 360

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 214 VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD- 271
           V      I E  +D    +G +    CR+  A    V+W  ++  L       I      
Sbjct: 9   VQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGG 68

Query: 272 ---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
              L +  +A  DSG     A    G  + S +L V E
Sbjct: 69  YHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTE 102

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 75.9 bits (187), Expect = 8e-17
 Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 12/117 (10%)

Query: 296 AQGSGSLTVKEHT-HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES 354
                S  V+    HI +  ED +V+ G SATFRC           + W     P+    
Sbjct: 1   GSSGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPAN--YEPVHWFLDKTPLHANE 58

Query: 355 EPRFVQSND--YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFT 409
                      + LT+ + +  DSG     A        A A L V    E PS F+
Sbjct: 59  LNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGD----QRASAALRVT---EKPSVFS 108

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 73.6 bits (181), Expect = 6e-16
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 13/112 (11%)

Query: 120 LSVLA-APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV- 177
             V     +   + E ++  E  + TF C+ S      +HW  +  P+     N   ++ 
Sbjct: 7   GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH---ANELNEID 63

Query: 178 ----GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAP 225
               G + +T+  L   D+G     A    G       + V       + + 
Sbjct: 64  AQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSG 111

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 8/85 (9%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGS 101
                     C           W  D  P++ ++     +Q      L ++ +   D G+
Sbjct: 25  VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGT 84

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
              E  +    A      L V   P
Sbjct: 85  IYFEAGDQRASAA-----LRVTEKP 104

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
              S  I  +T  GVPG   + +A P   ++  L W  P   +  +  Y++ Y+  +  +
Sbjct: 3   SGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPP--RSDTIANYELVYKDGEHGE 60

Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
                     I+    TS +L GL+P++ Y   LA  +  G GA + 
Sbjct: 61  E-------QRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTA 100

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 12/114 (10%)

Query: 394 ATLTVQVPLEAPS---NFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
             + V      P    NF           ++SW P  P+S       Y++     + GE 
Sbjct: 7   GDIQVITQTGVPGQPLNFKAE-PESETSILLSWTP--PRS--DTIANYELVYKDGEHGE- 60

Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
              E  +     T+  +    P S  + R+ A +    G  +  IS  T +   
Sbjct: 61  ---EQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSG 111

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 88.6 bits (220), Expect = 3e-21
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAP--KDEYTVD-GKTVVLTCRVFGAPKPEVNWIHN 255
           ++ S G + + V +  +A  P+I      +  Y    G+ + L     G P+P+V W   
Sbjct: 2   SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61

Query: 256 QKELTGGRYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
              L   R  +  +       +   A +DSGEY    + +      +  + V E
Sbjct: 62  GAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVE 115

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 3/99 (3%)

Query: 121 SVLAAPYFTVEPEF---INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV 177
            +   P   +             E +       G P P++ W   G P+  +  + R   
Sbjct: 17  EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSD 76

Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
                 +    +SD+G Y  +           + + V+ 
Sbjct: 77  FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVE 115

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 40  RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSD 98
           R+  +    +++ L   F G P PQ +W+K G P++ S   +   ++     ++    SD
Sbjct: 31  RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSD 90

Query: 99  QGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
            G Y   V     +  + +I + V+   
Sbjct: 91  SGEYELSVQIENMKD-TATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSE 373
            + Y  + G+           P  +  +VW +G  P+D           D    V +++ 
Sbjct: 31  RQTYIRKVGEQLNLVVPFQGKP--RPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAAR 88

Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQVP 401
            DSG+Y    Q E     A   + V   
Sbjct: 89  SDSGEYELSVQIENMKDTATIRIRVVEK 116

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 92.0 bits (228), Expect = 3e-21
 Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 35/202 (17%)

Query: 44  VALRNKKVELFCIFGGTPLPQT-----IWSKDGVPIN----------------------P 76
           V      + + C F              W  +   I                        
Sbjct: 12  VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71

Query: 77  SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN 136
            D++S GN   +L I  V+  D G Y C +S G   A    I + V A      +   + 
Sbjct: 72  KDQLSLGNA--ALQITDVKLQDAGVYRCMISYG--GADYKRITVKVNAPYNKINQRILVV 127

Query: 137 AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI----TIENLRKSDT 192
                     C+A G P+ E+ W  +   +              ++    +   +  +  
Sbjct: 128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTN 187

Query: 193 GNYGCNATNSLGYVYKDVYVNV 214
             + C              + +
Sbjct: 188 EIFYCTFRRLDPEENHTAELVI 209

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 85.1 bits (210), Expect = 7e-19
 Identities = 42/216 (19%), Positives = 70/216 (32%), Gaps = 41/216 (18%)

Query: 128 FTVE--PEFINAAEEETVTFECKASG-----LPEPEIHWVHNGKPI-----------SQA 169
           FTV    +         +T ECK        L    ++W    K I            Q 
Sbjct: 2   FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQH 61

Query: 170 PP-NPRRKVGPNRIT-------IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI 221
                R ++  ++++       I +++  D G Y C  +   G  YK + V V A   +I
Sbjct: 62  SSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKI 120

Query: 222 TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD---------- 271
            +              LTC+  G PK EV W  +  ++  G+ T   +            
Sbjct: 121 NQ-RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTST 179

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
           L+I       +  + C  R        +  L + E 
Sbjct: 180 LRINT---TTNEIFYCTFRRLDPEENHTAELVIPEL 212

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 82.4 bits (203), Expect = 7e-18
 Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 35/211 (16%)

Query: 223 EAPKDEYTVD-GKTVVLTCRVFGAPKPE-----VNWIH---------NQKELTG------ 261
             PKD Y V+ G  + + C+     + +     V W           + +E         
Sbjct: 5   TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSY 64

Query: 262 -GRYTILE------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP 314
             R  +L+         L+ITDV   D+G Y C      G      ++ V    +  +Q 
Sbjct: 65  RQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQR 123

Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLR-GSEPIDFESEPRFVQSNDYSLTVTKS-- 371
                         C A   P  K  ++W     + +  ++     +  +    VT +  
Sbjct: 124 ILVVDPVTSEHELTCQAEGYP--KAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR 181

Query: 372 -SELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            +   +  + C  +         A L +   
Sbjct: 182 INTTTNEIFYCTFRRLDPEENHTAELVIPEL 212

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 8/109 (7%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD------RISQGN 84
           +AP  +   R   V     + EL C   G P  + IW+     +          +  +  
Sbjct: 114 NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKL 173

Query: 85  YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
           +  +  ++ +  +    + C       E    + +L +   P      E
Sbjct: 174 FNVTSTLR-INTTTNEIFYCTFRRLDPEENH-TAELVIPELPLAHPPNE 220

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 23/126 (18%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLS---IVWLRGSEPI-------------DFE 353
           +T   + Y VE G + T  C    +  L L+   + W    + I                
Sbjct: 4   VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63

Query: 354 SEPR------FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
              R       +   + +L +T     D+G Y C           + T+ V  P    + 
Sbjct: 64  YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQ 122

Query: 408 FTLIQV 413
             L+  
Sbjct: 123 RILVVD 128

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 87.1 bits (216), Expect = 7e-21
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
           ++    VE E       + +   C+        I+W+ +G  +     + R ++    + 
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQL---AESNRTRITGEEVE 57

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNV---LAHAP 219
           +++   +D+G Y C  ++  G       VNV   L   P
Sbjct: 58  VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGP 96

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 85.9 bits (213), Expect = 1e-20
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277
           +       +      G  + L CR+       +NW+ +  +L     T +   ++++ D 
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDS 61

Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKE 306
             ADSG Y C   +  G+     S+ V +
Sbjct: 62  VPADSGLYACVTSSPSGSDTTYFSVNVSD 90

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 72.8 bits (179), Expect = 7e-16
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
           +      ++L C           W +DGV +  S+R      G+ + ++    +D G Y 
Sbjct: 14  LVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT--GEEVEVQDSVPADSGLYA 70

Query: 104 CEVSNGVGEAKSYSIDLSVLAAP 126
           C  S+  G   +    ++V  A 
Sbjct: 71  CVTSSPSGSD-TTYFSVNVSDAL 92

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 7/99 (7%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
              + E + V  G     RC    D     SI WLR    +      R   + +  + V 
Sbjct: 6   SGVEVESFLVHPGDLLQLRCRLRDDV---QSINWLRDGVQL--AESNRTRITGE-EVEVQ 59

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQ-VPLEAPSN 407
            S   DSG Y C   +         ++ V       PS+
Sbjct: 60  DSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSS 98

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 87.1 bits (216), Expect = 1e-20
 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 484 NGAYNGPPSEIISFVTPEG------VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGY 537
           +   +GP ++ +S  T E       VP    SL   PL +S   + W  PE  N V+ GY
Sbjct: 2   SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSI-VVSWTPPENQNIVVRGY 60

Query: 538 KIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
            I Y                   D       +  L+PS+ Y I L  +   G+G   
Sbjct: 61  AIGYGIGSP-------HAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPL 110

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
            ++ L      E PS+  +  ++ +   VVSW P  P++     RGY +  +        
Sbjct: 18  FESDLDETRVPEVPSSLHVRPLVTS--IVVSWTP--PENQNIVVRGYAIG-YGIGSPHAQ 72

Query: 452 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPP-SEIISFVTPEGVPGT 506
             ++     +     ++   P+S     + AFN    G P  E          P +
Sbjct: 73  TIKV---DYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPSS 125

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
           +     VEP         T+  +C A G P P   W  N  P++                
Sbjct: 2   SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------YM 53

Query: 184 IENLRKSDTGNYGCNATNSLGYVY-KDVYVNV 214
           +  +     G Y C+  N       K V + +
Sbjct: 54  VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 80.8 bits (200), Expect = 8e-19
 Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKIT 275
               +I   P  +  + G T+VL C   G+P P   W  N+  LT             + 
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVP 55

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTV 304
            V     G Y C   N   +        +
Sbjct: 56  YVDLEHQGTYWCHVYNDRDSQDSKKVEII 84

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 10/95 (10%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
            I  +P   ++  G +   +C AV  P       W +   P+                 V
Sbjct: 5   QICVEPTSQKLMPGSTLVLQCVAVGSP--IPHYQWFKNELPLT--------HETKKLYMV 54

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLE 403
                   G Y C    + D  +++    +   L 
Sbjct: 55  PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV 110
           + L C+  G+P+P   W K+ +P+    +       K  ++ +V+   QG+Y C V N  
Sbjct: 21  LVLQCVAVGSPIPHYQWFKNELPLTHETK-------KLYMVPYVDLEHQGTYWCHVYNDR 73

Query: 111 GEAKSYSIDLSV 122
               S  +++ +
Sbjct: 74  DSQDSKKVEIII 85

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 87.0 bits (216), Expect = 2e-20
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 489 GPPSEIISFVTPEGVPGTV-QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVK 545
              S  ++  T   VP    Q+L      S +  + W  P     NG + GYKI+Y+   
Sbjct: 3   SGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYR--- 59

Query: 546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
             K     +    +   T  S  + GL+  T+Y   +A  T  G G  +
Sbjct: 60  --KASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPAT 106

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           VP  AP N +L +V ++K  ++ W P +P +  G   GYK++             L+   
Sbjct: 17  VPSAAPQNLSL-EVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLV--S 73

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEA 512
           G   +  ++     ++   RV A      GP ++ +S  T E      +  E 
Sbjct: 74  GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEV 126

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 22/158 (13%), Positives = 40/158 (25%), Gaps = 47/158 (29%)

Query: 589 GDGAESKYLF-----YVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRR 643
           G    S  +       VP   P N+        +++I W        N     Y+I +R+
Sbjct: 1   GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60

Query: 644 HNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTT 703
            +      +  V                                           G   +
Sbjct: 61  ASRKSDVTETLV------------------------------------------SGTQLS 78

Query: 704 TEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 741
             ++     ++   RV A      GP ++ +S  T E 
Sbjct: 79  QLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFES 116

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 86.0 bits (213), Expect = 2e-20
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILET-------- 269
           AP IT               +   V G PKP + W +N   L   +Y   +         
Sbjct: 4   APTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 270 -GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI 310
            G L++ +    ++G+YT  A+N+ G  +   S        I
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
           V  AP  T      +   +          G P+P + W +NG  ++++     +    N 
Sbjct: 1   VHFAPTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 182 ------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI 221
                 + ++N    + G+Y   A N  G   K +  + +   P I
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM-GWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 40  RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI-------SQGNYGKSLIIK 92
              E    +    +     G P P   W  +G  +N S  I       +   Y   L + 
Sbjct: 8   TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLD 67

Query: 93  HVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
           +    + G YT    N  G+     I    +  P
Sbjct: 68  NPTHMNNGDYTLIAKNEYGKD-EKQISAHFMGWP 100

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 8/90 (8%)

Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID------FESEPRFVQSNDYSLTVTKS 371
              +            +P  K ++ W      ++       +            L +   
Sbjct: 12  SPTSDHHWCIPFTVKGNP--KPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNP 69

Query: 372 SELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           + +++G YT  A+ E    E Q +      
Sbjct: 70  THMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 15/218 (6%)

Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEGSI 452
           A L       +PS         +  A V ++   P++  G     YK + W     E   
Sbjct: 1   APLAQADTPSSPSI--DQVEPYSSTAQVQFDE--PEATGGVPILKYKAE-WRAVGEEVWH 55

Query: 453 RELIVNKGESTTT--EVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT-PEGVPGTVQS 509
            +    K  S      +    P +    R+ A NG   G  S    F T P   P   + 
Sbjct: 56  SKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKL 115

Query: 510 LEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKL 569
              +    ++  +  +K +     +  Y ++Y+++          +        +    L
Sbjct: 116 EGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSE------WKPEIRLPSGSDHVML 169

Query: 570 AGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDN 607
             L+ + +Y +++    + G    + ++F     +  +
Sbjct: 170 KSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHHH 207

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 18/201 (8%)

Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
                    + +  P++ +    I      + W P++         GY++          
Sbjct: 12  SGLVPRGSHMEVPQPTDLS-FVDITDSSIGLRWTPLNS----STIIGYRIT-VVAAGEGI 65

Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSL 510
            I E  V+        V    P       V          P+     +T +        L
Sbjct: 66  PIFEDFVD-SSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTT----LTQQTAVPPPTDL 120

Query: 511 EAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLA 570
               +G     + W  P  P+  L  + ++Y  VK  +    L        P+  +  L 
Sbjct: 121 RFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEEDVAELSI-----SPSDNAVVLT 173

Query: 571 GLEPSTKYRIHLAGYTKAGDG 591
            L P T+Y + ++   +  + 
Sbjct: 174 NLLPGTEYVVSVSSVYEQHES 194

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 76.8 bits (189), Expect = 4e-16
 Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 13/192 (6%)

Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
           +   S ++   +   VP     L  + +  S+  L+W      +  ++GY+I   +    
Sbjct: 8   HHHSSGLVPRGSHMEVPQ-PTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEG 64

Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDN 607
                        D +     + GLEP   Y I +      G+   +          P +
Sbjct: 65  I-----PIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTD 119

Query: 608 VEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLAN 667
           +      P+ + ++W   P    +     + + +      E    +  +    + +VL N
Sbjct: 120 LRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVK-NEEDVAELSISPSDNAVVLTN 174

Query: 668 QPTFQPYEIKVV 679
                 Y + V 
Sbjct: 175 LLPGTEYVVSVS 186

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 12/140 (8%)

Query: 357 RFVQSNDYSLTVTKSSELDSG-QYTCRAQTELDFIE-AQATLTVQVPLEAPSNFTLIQVI 414
            FV S+    TVT    L+ G  Y     T  +  E    TLT Q  +  P++      I
Sbjct: 70  DFVDSSVGYYTVT---GLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLR-FTNI 125

Query: 415 DAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS 474
                 V+W P  P S       + V  ++    E  + EL ++        +   +P +
Sbjct: 126 GPDTMRVTWAP--PPS--IDLTNFLV-RYSPVKNEEDVAELSIS-PSDNAVVLTNLLPGT 179

Query: 475 KNFARVLAFNGAYNGPPSEI 494
           +    V +    +   P   
Sbjct: 180 EYVVSVSSVYEQHESTPLRG 199

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 85.5 bits (212), Expect = 3e-20
 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
           A   TE   +    +  T V TC+    P   V W     EL   G++   + G    L 
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLT 66

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           I+ +  ADS  YTC      G AQ    L V+ 
Sbjct: 67  ISALEKADSDTYTCDI----GQAQSRAQLLVQG 95

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
             T++  + +VE   +A F C     P    ++ W +G   +   +  +   S +     
Sbjct: 10  CFTEELTNLQVEEKGTAVFTC-KTEHP--AATVTWRKGLLEL--RASGKHQPSQEGLTLR 64

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
           LT++   + DS  YTC         +++A L VQ     PS
Sbjct: 65  LTISALEKADSDTYTCDIGQA----QSRAQLLVQGRRSGPS 101

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
            A  FT E   +   E+ T  F CK    P   + W      +     + + +       
Sbjct: 7   GANCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELR---ASGKHQPSQEGLT 62

Query: 181 -RITIENLRKSDTGNYGCNATNS 202
            R+TI  L K+D+  Y C+   +
Sbjct: 63  LRLTISALEKADSDTYTCDIGQA 85

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 8/84 (9%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSY 102
                     C     P     W K  + +  S +      G    L I  +E +D  +Y
Sbjct: 20  VEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTY 78

Query: 103 TCEVSNGVGEAKSYSIDLSVLAAP 126
           TC++      A+     L V    
Sbjct: 79  TCDIGQAQSRAQ-----LLVQGRR 97

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 85.5 bits (212), Expect = 3e-20
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
           + +  P  V  +     G ++  L W +PEQPNG+++ Y+IKY             +   
Sbjct: 6   SGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKE------MQSYS 59

Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                TT A ++GL+P T+Y   +   T AG G  S
Sbjct: 60  TLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFS 95

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 6/105 (5%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
           + Q            +        + W    P+   G    Y+++ + EKD E      +
Sbjct: 6   SGQAAPSQVVVIRQERA-GQTSVSLLWQE--PEQPNGIILEYEIK-YYEKDKEMQSYSTL 61

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
             K  +T   V    P ++   +V A   A  G  S+ +   T +
Sbjct: 62  --KAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 104

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 85.5 bits (212), Expect = 3e-20
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 10/110 (9%)

Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT 260
           +S         + V A   + TE  ++E   +G T VL C +  +    V W    + L 
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGHETLR 59

Query: 261 -GGRYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            G R+++ + G    L+I  +   D+GEY C      G  + S  LTV+ 
Sbjct: 60  DGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRA 105

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 75.9 bits (187), Expect = 8e-17
 Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 14/117 (11%)

Query: 294 GTAQGSGSLTVKEH-THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF 352
            + + S  LTV+      T+   + E   G +A  RC           + W +G E +  
Sbjct: 5   SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMA----PVEWWKGHETL-- 58

Query: 353 ESEPRFVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
               R     D     L +      D+G+Y C    E       A LTV+     PS
Sbjct: 59  RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKE----RTSAMLTVRAMPSGPS 111

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 11/100 (11%)

Query: 108 NGVGEAKSYSIDLSVLAAPY-FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI 166
           +     ++ S  L+V A P  FT       A E  T    C+ S      + W    + +
Sbjct: 2   SSGSSGRT-SAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWWKGHETL 58

Query: 167 SQAPPNPR---RKVGPNRI-TIENLRKSDTGNYGCNATNS 202
                  R   R+ G      I  L   D G Y C     
Sbjct: 59  ---RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKE 95

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 20/85 (23%), Positives = 25/85 (29%), Gaps = 9/85 (10%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGS 101
            A       L C        +  W K    +   DR S    G    L I+ +   D G 
Sbjct: 30  EATEGATAVLRCELSKMAPVE--WWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGE 87

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
           Y C        A      L+V A P
Sbjct: 88  YLCMCGKERTSAM-----LTVRAMP 107

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 85.6 bits (212), Expect = 3e-20
 Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
           +   S   + +    VP    SL   P  +    + W  P  PN V+ GY I Y      
Sbjct: 2   SSGSSGPENDLDESQVPDQPSSLHVRPQTNCI-IMSWTPPLNPNIVVRGYIIGYGVGSP- 59

Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                        D       +  LE S+ Y I L  +  AG+G   
Sbjct: 60  ------YAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL 100

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
           QVP + PS+  +    +    ++SW P  P +     RGY +  +          E +  
Sbjct: 16  QVP-DQPSSLHVRPQTNC--IIMSWTP--PLNPNIVVRGYIIG-YGVGSPY---AETVRV 66

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPP-SEIISFVTPEGVPGT 506
             +     +++   +S     + AFN A  G P  E  +  +    P +
Sbjct: 67  DSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGPSS 115

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 91.5 bits (226), Expect = 4e-20
 Identities = 38/296 (12%), Positives = 80/296 (27%), Gaps = 20/296 (6%)

Query: 302 LTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQS 361
           L  +                G S T  C  V +P    ++ W+         S P     
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGV-EPEDNATVHWVLRKPAAG--SHPSRWAG 57

Query: 362 NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVV 421
               L +      DSG Y+C              L V VP E     +  +       V 
Sbjct: 58  MGRRLLLRSVQLHDSGNYSCYRAGRP---AGTVHLLVDVPPE-EPQLSCFRKSPLSNVVC 113

Query: 422 SWNPVSPQSLRGHFR-GYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 480
            W P S  SL        +    +  +      +      + +         +S     +
Sbjct: 114 EWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSM 173

Query: 481 LAFNGAYNGPPSEIISFVTPEGV---PGTVQSLEAIPLGSSAFYLKWVKPE--QPNGVLM 535
              +   +   S+  +F     +   P    ++ A+        + W  P     +   +
Sbjct: 174 CVASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRL 232

Query: 536 GYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
            ++++Y++ +            ++         +       ++ + L    + G G
Sbjct: 233 RFELRYRAERSK------TFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQG 282

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 82.6 bits (203), Expect = 3e-17
 Identities = 47/305 (15%), Positives = 92/305 (30%), Gaps = 26/305 (8%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVNWIHNQKELTGGRYTILETG-DLKIT 275
            P    A     ++ G +V LTC          V+W+  +             G  L + 
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC--NAVS 333
            V   DSG Y+C+   +     G+  L V       ++P+         +   C     S
Sbjct: 66  SVQLHDSGNYSCYRAGRP---AGTVHLLVDVP---PEEPQLSCFRKSPLSNVVCEWGPRS 119

Query: 334 DPSLKLSIVWL----RGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT--CRAQTEL 387
            PSL    V L    + S   DF+   ++ Q +          E DS  Y       + +
Sbjct: 120 TPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSV 179

Query: 388 DFIEAQA---TLTVQVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTW 443
               ++         +  + P+N T+  V    + + V+W      +   +   ++++  
Sbjct: 180 GSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYR 239

Query: 444 TEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---IISFVTP 500
            E+    +   +           +       ++  ++ A      G  SE          
Sbjct: 240 AERSKTFTTWMVKDL---QHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPW 296

Query: 501 EGVPG 505
                
Sbjct: 297 TESRS 301

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 10/123 (8%)

Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVG 178
           L+    P   V    + +   ++VT  C          +HWV             R    
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAG--SHPSRWAGM 58

Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
             R+ + +++  D+GNY C              V++L   P   E P+           +
Sbjct: 59  GRRLLLRSVQLHDSGNYSCYRAGRPAG-----TVHLLVDVPP--EEPQLSCFRKSPLSNV 111

Query: 239 TCR 241
            C 
Sbjct: 112 VCE 114

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 54.9 bits (131), Expect = 4e-08
 Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 10/127 (7%)

Query: 30  RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKS 88
           R  P  Q V R    +L    V L C         T+ W               G  G+ 
Sbjct: 4   RRCP-AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM-GRR 61

Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK 148
           L+++ V+  D G+Y+C  +       + ++ L V   P    EP+     +       C+
Sbjct: 62  LLLRSVQLHDSGNYSCYRAGRP----AGTVHLLVDVPPE---EPQLSCFRKSPLSNVVCE 114

Query: 149 ASGLPEP 155
                 P
Sbjct: 115 WGPRSTP 121

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 25/190 (13%), Positives = 56/190 (29%), Gaps = 10/190 (5%)

Query: 496 SFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 555
             +  +  P   Q         S    +W  P     +     +  +  + +      E 
Sbjct: 87  VHLLVDVPPEEPQLSCFRKSPLSNVVCEW-GPRSTPSLTTKAVLLVRKFQNSPAEDFQEP 145

Query: 556 LPYISDPTTTSAKLAG-LEPSTKYRIHLAGYTKAGDGAESKYLFY----VPFKNPDN--V 608
             Y  +    S +LA     S+ Y + +   +  G        F     +    P N  V
Sbjct: 146 CQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITV 205

Query: 609 EGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQ 668
                 P  L ++W        +    ++ + +R   +   +    V D  Q   V+ + 
Sbjct: 206 TAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKT-FTTWMVKD-LQHHCVIHDA 263

Query: 669 PTFQPYEIKV 678
            +   + +++
Sbjct: 264 WSGLRHVVQL 273

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 84.6 bits (210), Expect = 5e-20
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 8/97 (8%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
           +    PG V++L+A+    ++  + W  P   NG + GY++    V   K          
Sbjct: 3   SGSSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGK--------EQ 54

Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
             +    S KL GL+  T+Y +    Y + G G  + 
Sbjct: 55  NIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTD 91

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIR 453
            +     P     N            +++W P  P    G  +GY++   TE        
Sbjct: 1   GSSGSSGP-GPVENLQ-AVSTSPTSILITWEP--PAYANGPVQGYRLF-CTEVSTG---- 51

Query: 454 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
           +    + +  + +++     ++   R LA+N    G  ++ I+ VT     
Sbjct: 52  KEQNIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG 102

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 87.0 bits (216), Expect = 8e-20
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 16/199 (8%)

Query: 398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEGSIRELI 456
           +  P   P +   ++ +      ++W+P  P    G   + Y V+   E   +      +
Sbjct: 3   MDTP-GPPQDLK-VKEVTKTSVTLTWDP--PLLDGGSKIKNYIVE-KRESTRKAYST--V 55

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLG 516
                 T+ +VD+       + RVLA N    G P+E    V     P     +  + + 
Sbjct: 56  ATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVT 115

Query: 517 SSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 575
            ++  L W KPE   G  ++GY ++ Q+    K           +    T A + GL   
Sbjct: 116 RNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWAT-------CATVKVTEATITGLIQG 168

Query: 576 TKYRIHLAGYTKAGDGAES 594
            +Y   ++   + G     
Sbjct: 169 EEYSFRVSAQNEKGISDPR 187

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 75.8 bits (187), Expect = 6e-16
 Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 15/181 (8%)

Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISD 561
            PG  Q L+   +  ++  L W  P    G  +  Y ++ +         +       ++
Sbjct: 5   TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTV------ATN 58

Query: 562 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKN----PDNVEGRGSTPNN 617
              TS K+  L+    Y   +    + G G  ++    V        P  +     T N+
Sbjct: 59  CHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNS 118

Query: 618 LVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIK 677
           + +SW   PE +  +    Y +  +   + + W        + +E  +      + Y  +
Sbjct: 119 VSLSWEK-PEHDGGSRILGYIVEMQTKGSDK-WAT--CATVKVTEATITGLIQGEEYSFR 174

Query: 678 V 678
           V
Sbjct: 175 V 175

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 9/123 (7%)

Query: 382 RAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKK--AVVSWNPVSPQSLRG-HFRGY 438
            A+ E        T       E P     I ++D  +    +SW    P+   G    GY
Sbjct: 80  LAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEK--PEHDGGSRILGY 137

Query: 439 KVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFV 498
            V    E   +GS +       + T   +   +   +   RV A N      P ++   V
Sbjct: 138 IV----EMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPV 193

Query: 499 TPE 501
             +
Sbjct: 194 IAK 196

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 84.5 bits (209), Expect = 9e-20
 Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP--PNPRRKVGP 179
               P     P  +  ++ E  T  CKA G P P I W   G+ +      P   R + P
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65

Query: 180 N------RITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLA 216
           +      RI      + D G Y C A N LG     D  + V A
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 79.1 bits (195), Expect = 7e-18
 Identities = 29/108 (26%), Positives = 37/108 (34%), Gaps = 12/108 (11%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL------TGGRYTILETGD 271
            P I E P D     G+   L C+  G P P + W    + +            +L +G 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 272 LKITDVAFA-----DSGEYTCFARNKLGTAQG-SGSLTVKEHTHITDQ 313
           L    +        D G Y C ARN LG A     SL V    H    
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 76.0 bits (187), Expect = 8e-17
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEF--- 96
           +  + +   L C   G P P   W K G  +       + +       SL    +     
Sbjct: 20  IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79

Query: 97  --SDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV 130
              D+G Y C   N +GEA S+   L V AA +   
Sbjct: 80  SRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 12/112 (10%)

Query: 300 GSLTVKEHT-HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP-- 356
           GSL  ++    I + P D  V  G+ AT  C A   P    +I W +G E ++ + +   
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRP--TPTIEWYKGGERVETDKDDPR 58

Query: 357 -RFVQSNDYSLTV-----TKSSELDSGQYTCRAQTEL-DFIEAQATLTVQVP 401
              +     SL        + S  D G Y C A+  L + +   A+L V   
Sbjct: 59  SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD--- 271
           +     T+  K +   +G T  L C +  +    V W    + L  GGRY++ + G    
Sbjct: 6   SGPARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCE 63

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH-THITDQPED 316
           L+I D++ AD+GEY+C      G  + S +LTV+      T+    
Sbjct: 64  LQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGP 105

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 13/109 (11%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV---GPN 180
               FT + +   A+E  T T +C+ S      + W    + +       R  +   G  
Sbjct: 7   GPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETL---RDGGRYSLKQDGTR 61

Query: 181 RI-TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDE 228
               I +L  +D G Y C              + V A     TE     
Sbjct: 62  CELQIHDLSVADAGEYSCMCGQERT----SATLTVRALPARFTEGSGPS 106

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
             T   +  E   G +AT +C           + W +G E +      R+    D     
Sbjct: 10  RFTQDLKTKEASEGATATLQCELSKVA----PVEWKKGPETL--RDGGRYSLKQDGTRCE 63

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFT 409
           L +   S  D+G+Y+C    E       ATLTV+     P+ FT
Sbjct: 64  LQIHDLSVADAGEYSCMCGQE----RTSATLTVRAL---PARFT 100

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 9/91 (9%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGS 101
            A       L C    + +    W K    +    R S    G    L I  +  +D G 
Sbjct: 19  EASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGE 76

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
           Y+C        A      L+V A P    E 
Sbjct: 77  YSCMCGQERTSAT-----LTVRALPARFTEG 102

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 83.6 bits (207), Expect = 2e-19
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
             P EAP+    ++V+ + +  V W  V           Y+++ W   D E +   + V 
Sbjct: 16  DAPSEAPTEVG-VKVLSSSEISVHWEHVLE----KIVESYQIRYWAAHDKEEAANRVQV- 69

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
             +  +  ++  +P ++ F  V A N A  GPPS++I   T +   
Sbjct: 70  TSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 489 GPPSEIISFVTPEGVPGTV-QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
              S +    + +  P      +    L SS   + W        ++  Y+I+Y +    
Sbjct: 3   SGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHV--LEKIVESYQIRYWAAHDK 60

Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
           +      ++         SA+L  L P T+Y I +     AG G  S
Sbjct: 61  EEAANRVQVT----SQEYSARLENLLPDTQYFIEVGACNSAGCGPPS 103

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 679 VQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
           ++ W   D E +   + V   +  +  ++  +P ++ F  V A N A  GPPS++I   T
Sbjct: 52  IRYWAAHDKEEAANRVQV-TSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFT 110

Query: 739 PEG 741
            + 
Sbjct: 111 KKA 113

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 82.5 bits (204), Expect = 2e-19
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
               VE E +     + +   C+        I+W+ +G  +     + R ++    + + 
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQL---VESNRTRITGEEVEVR 65

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           +   +D+G Y C  ++  G       VNV
Sbjct: 66  DSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 80.6 bits (199), Expect = 1e-18
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVA 278
             +    +      G  + L CR+       +NW+ +  +L     T +   ++++ D  
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSI 68

Query: 279 FADSGEYTCFARNKLGTAQGSGSLTV 304
            ADSG Y C   +  G+     S+ V
Sbjct: 69  PADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 68.3 bits (167), Expect = 2e-14
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
           +      ++L C           W +DGV +  S+R      G+ + ++    +D G Y 
Sbjct: 20  LVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT--GEEVEVRDSIPADSGLYA 76

Query: 104 CEVSNGVGEAKSYSIDLSV 122
           C  S+  G   +    ++V
Sbjct: 77  CVTSSPSGSD-TTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 64.8 bits (158), Expect = 4e-13
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
             +  + E   V  G     RC    D     SI WLR    +      R   + +  + 
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRDDV---QSINWLRDGVQL--VESNRTRITGEE-VE 63

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
           V  S   DSG Y C   +         ++ V
Sbjct: 64  VRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 83.3 bits (206), Expect = 2e-19
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 12/114 (10%)

Query: 210 VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILET 269
           V + V    P +    + E  ++     +   V G P P ++W+HN + L   +   +E 
Sbjct: 1   VALTVYY-PPRVVSLEEPELRLEHC---IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 56

Query: 270 --------GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE 315
                   G L        ++G YT  A+N LGTA  + +    +     D+  
Sbjct: 57  YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVS 110

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 82.6 bits (204), Expect = 4e-19
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 9/120 (7%)

Query: 118 IDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP-----PN 172
           + L+V   P                   E    G P P +HW+HNG+P+ ++        
Sbjct: 1   VALTVYYPPRVV---SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57

Query: 173 PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL-AHAPEITEAPKDEYTV 231
              ++    +        + GNY   A N LG   + +  + L    P    +P    TV
Sbjct: 58  QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 55  CIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK------SLIIKHVEFSDQGSYTCEVSN 108
            +  G P P   W  +G P+  S  I    Y +       L+       + G+YT    N
Sbjct: 27  FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKN 86

Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPE 133
            +G A   +I+   L  P+   E  
Sbjct: 87  PLGTANQ-TINGHFLKEPFPVDEVS 110

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 16/105 (15%), Positives = 27/105 (25%), Gaps = 10/105 (9%)

Query: 302 LTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQS 361
           LTV     +    E    E             +P    ++ WL   +P+           
Sbjct: 3   LTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNP--PPTLHWLHNGQPLRESKIIHVEYY 57

Query: 362 NDY-----SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            +       L   K +  ++G YT  A+  L              
Sbjct: 58  QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 82.0 bits (203), Expect = 3e-19
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKI 274
              ++ P+      G   V           +V W     +++   +Y +   G    L +
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            +V  AD G Y   A    G+++    L V E
Sbjct: 68  REVGPADQGSYAVIA----GSSKVKFDLKVIE 95

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GP 179
               F+ +P  +  A      FE +       ++ W   G  IS    + +  +      
Sbjct: 7   PVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDIS---ASNKYGLATEGTR 62

Query: 180 NRITIENLRKSDTGNYGCNATNS 202
           + +T+  +  +D G+Y   A +S
Sbjct: 63  HTLTVREVGPADQGSYAVIAGSS 85

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN 362
             K  +  + +P   EV AG  A F         +K  + W RG   I   +  ++  + 
Sbjct: 4   GKKPVSAFSKKPRSVEVAAGSPAVFEAE-TERAGVK--VRWQRGGSDI--SASNKYGLAT 58

Query: 363 D---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           +   ++LTV +    D G Y   A +     + +  L V 
Sbjct: 59  EGTRHTLTVREVGPADQGSYAVIAGSS----KVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 61.2 bits (149), Expect = 8e-12
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 32  APKQQYVTRKKEV-ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--S 88
            P   +  + + V                    +  W + G  I+ S++      G   +
Sbjct: 6   KPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHT 64

Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAK 114
           L ++ V  +DQGSY     +   +  
Sbjct: 65  LTVREVGPADQGSYAVIAGSSKVKFD 90

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 82.0 bits (203), Expect = 4e-19
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 218 APEITEAPKDEYTV-DGKTVVLTCRVFGAPKPEVNWIHNQKELT--GGRYTILETGD--- 271
           +    +  +  Y V  G  + LT  +      EV W+ N +E+   G +Y     G    
Sbjct: 15  STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           L I+  + AD   Y C      G  + S  L VKE
Sbjct: 74  LTISQCSLADDAAYQCVV----GGEKCSTELFVKE 104

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 12/103 (11%)

Query: 301 SLTVKEHTHITDQPED-YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
           S+  K+ T    + E  Y+V  G         ++D   +  + WL+  + I   S  +++
Sbjct: 9   SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAE--VKWLKNGQEIQ-MSGSKYI 64

Query: 360 QSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
             +     +LT+++ S  D   Y C    E    +    L V+
Sbjct: 65  FESIGAKRTLTISQCSLADDAAYQCVVGGE----KCSTELFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 4/90 (4%)

Query: 116 YSIDLSVLAAPYFTVE-PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR 174
           +   +    +  F  +       ++   +    + +   + E+ W+ NG+ I  +     
Sbjct: 6   HHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYI 64

Query: 175 -RKVGPNRI-TIENLRKSDTGNYGCNATNS 202
              +G  R  TI     +D   Y C     
Sbjct: 65  FESIGAKRTLTISQCSLADDAAYQCVVGGE 94

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 4/70 (5%)

Query: 48  NKKVELFCIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGKSLIIKHVEFSDQGSYTC 104
             K+ L          +  W K+G  I  S            ++L I     +D  +Y C
Sbjct: 31  GHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 89

Query: 105 EVSNGVGEAK 114
            V       +
Sbjct: 90  VVGGEKCSTE 99

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 82.6 bits (204), Expect = 4e-19
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 14/114 (12%)

Query: 204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKEL--- 259
           G       + V  + P I  + + ++ + G+   + C +   P P+ + W   +  L   
Sbjct: 1   GSSGSSGTLTV--NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG 58

Query: 260 TGGRYTILET-------GDLKITDVAFAD-SGEYTCFARNKLGTAQGSGSLTVK 305
           T GRYT+            L I+++  AD    Y C A N  G+      L  +
Sbjct: 59  TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 71.8 bits (176), Expect = 3e-15
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 10/109 (9%)

Query: 115 SYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPP-- 171
             S  L+V   P  +   +  +A   E    +C     P P+ I W      +       
Sbjct: 4   GSSGTLTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGR 62

Query: 172 -----NPRRKVGPNRITIENLRKSDTG-NYGCNATNSLGYVYKDVYVNV 214
                    +   + +TI N+ ++D    Y C A NS G   + + +  
Sbjct: 63  YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 64.9 bits (158), Expect = 8e-13
 Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 10/114 (8%)

Query: 294 GTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE 353
           G++  SG+LTV     I+   +      G+    +C   S P     I W      ++  
Sbjct: 1   GSSGSSGTLTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPP-DRIAWSWKENVLESG 58

Query: 354 SEPRFVQSNDY-------SLTVTKSSELD-SGQYTCRAQTELDFIEAQATLTVQ 399
           +  R+             +LT++     D    Y C A            L  Q
Sbjct: 59  TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 18/106 (16%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTI-WSKDGVPINPSDR--------IS 81
            + + Q+           +K ++ C    TP P  I WS     +              +
Sbjct: 18  SSTQTQHALH-------GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST 70

Query: 82  QGNYGKSLIIKHVEFSD-QGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
           +     +L I ++  +D Q  Y C   N  G   +  I L    + 
Sbjct: 71  EEGVISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQGSE 115

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 5e-19
 Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDLK 273
           P I E P D    +G    L CR        V+WI     +        R  +L  G L 
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH 309
            T+V   D+G YTC   N +G    S +L V    H
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 6e-16
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPN-RIT 183
           P     P  +N  E      +C+AS      + W+  NG  ++      R  V  +  + 
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP 219
             N+   DTG Y C  +NS+G       +NV     
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR--GSEPIDFESEPRFVQSND 363
               I + P D  V  G +A  +C A +  +   S+ W+   G+       + R    +D
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRASTSLT---SVSWITPNGTVMTHGAYKVRIAVLSD 396

Query: 364 YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
            +L  T  +  D+G YTC     +    A ATL V
Sbjct: 397 GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSK-DGVPINP---SDRISQGNYGKSLIIKHVEFSDQG 100
                  EL C      L    W   +G  +       RI+  + G +L   +V   D G
Sbjct: 353 VTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG-TLNFTNVTVQDTG 410

Query: 101 SYTCEVSNGVGEAKSYSIDLSVLAAP 126
            YTC VSN VG   + S  L+V    
Sbjct: 411 MYTCMVSNSVGNT-TASATLNVTGTH 435

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 82.0 bits (203), Expect = 5e-19
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKI 274
             I +  +D++   G+ V L C +  A  P V+W+ ++K +    +Y ++  G    L I
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
              +  D+GEYTC       TA     L V+E
Sbjct: 68  RGASLKDAGEYTCEVEASKSTAS----LHVEE 95

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 66.9 bits (164), Expect = 9e-14
 Identities = 22/85 (25%), Positives = 27/85 (31%), Gaps = 8/85 (9%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
                + VEL C       P   W KD   I  S +  +        L+I+     D G 
Sbjct: 19  WVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGE 77

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
           YTCEV      A      L V    
Sbjct: 78  YTCEVEASKSTAS-----LHVEEKA 97

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND-YSLT 367
            I    ED  V  G+    RC      +    + WL+  + I    +   V       L 
Sbjct: 10  AIIKPLEDQWVAPGEDVELRCELSRAGT---PVHWLKDRKAIRKSQKYDVVCEGTMAMLV 66

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
           +  +S  D+G+YTC  +      ++ A+L V+     PS
Sbjct: 67  IRGASLKDAGEYTCEVEAS----KSTASLHVEEKASGPS 101

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 64.2 bits (157), Expect = 8e-13
 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 8/85 (9%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR---RKVGPN 180
                    E    A  E V   C+ S    P +HW+ + K I     + +      G  
Sbjct: 7   GPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIR---KSQKYDVVCEGTM 62

Query: 181 RI-TIENLRKSDTGNYGCNATNSLG 204
            +  I      D G Y C    S  
Sbjct: 63  AMLVIRGASLKDAGEYTCEVEASKS 87

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 82.7 bits (204), Expect = 5e-19
 Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 16/114 (14%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAP---KPEVNWIHNQK----ELTGGRYTILETG 270
                E P+      G+ +    +V       KP + W   +        G    + ET 
Sbjct: 7   GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66

Query: 271 D---------LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE 315
           +         ++I       +G Y C    K      S  L V E T  T   +
Sbjct: 67  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 68.5 bits (167), Expect = 5e-14
 Identities = 20/119 (16%), Positives = 32/119 (26%), Gaps = 16/119 (13%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLP---EPEIHWVHNGKPISQAPPNPR------ 174
           +   F  +P+       E +TF  K        +P I W         +           
Sbjct: 6   SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65

Query: 175 ----RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HAPEITEAPK 226
                +V    + I   + +  GNY C  T    +      + V       P I   P 
Sbjct: 66  FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPS 124

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 68.1 bits (166), Expect = 7e-14
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 11/109 (10%)

Query: 311 TDQPEDYEVEAGQSATFRCNAVSDPSLKL-SIVWLRGSEPIDFESEPRFVQSND------ 363
            ++P+   V+ G+  TF     ++  L+  +I W +G          + +Q  +      
Sbjct: 11  IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 70

Query: 364 ----YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNF 408
               + + + K+ +  +G Y C    +  F      L V        N 
Sbjct: 71  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 53.8 bits (129), Expect = 5e-09
 Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 22/115 (19%)

Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPL---PQTIWSKDG-----------VPINPSD 78
           P+   V   +++                 L   P   W K             + +  + 
Sbjct: 14  PQGGTVKVGEDITFI-------AKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66

Query: 79  RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
                 Y   + I   + +  G+Y CEV+       S S DL V  +   T   +
Sbjct: 67  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD-SCSFDLEVHESTGTTPNID 120

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 81.6 bits (202), Expect = 6e-19
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 216 AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD--- 271
           +      EA KD   ++G    L C +     P V W +    L  G +Y++ + G    
Sbjct: 6   SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE 64

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           L + ++   DSG Y+C      G    S +LTV  
Sbjct: 65  LVVRNLRPQDSGRYSCSF----GDQTTSATLTVTA 95

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
              +  +D EV  G +AT RC   S  +    + W  G+  +      ++    +     
Sbjct: 10  RFQEALKDLEVLEGGAATLRCVLSSVAA---PVKWCYGNNVL--RPGDKYSLRQEGAMLE 64

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
           L V      DSG+Y+C    +       ATLTV      PS
Sbjct: 65  LVVRNLRPQDSGRYSCSFGDQ----TTSATLTVTALPSGPS 101

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GP 179
               F    + +   E    T  C  S +  P + W +    +    P  +  +      
Sbjct: 7   GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVL---RPGDKYSLRQEGAM 62

Query: 180 NRITIENLRKSDTGNYGCNATNS 202
             + + NLR  D+G Y C+  + 
Sbjct: 63  LELVVRNLRPQDSGRYSCSFGDQ 85

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSY 102
            L      L C+      P   W      + P D+ S    G    L+++++   D G Y
Sbjct: 20  VLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRY 78

Query: 103 TCEVSNGVGEAKSYSIDLSVLAAP 126
           +C   +    A      L+V A P
Sbjct: 79  SCSFGDQTTSAT-----LTVTALP 97

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 81.6 bits (201), Expect = 6e-19
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 222 TEAPKDEYTVDGKTVVLTCRVFGAP---KPEVNWIHNQK----ELTGGRYTILETGD--- 271
              P+D     G ++  + RV GA     P V W   +        G    + ++ D   
Sbjct: 8   VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRAS 67

Query: 272 ------LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                 L ITD   A +G Y C    K      + +LTV E
Sbjct: 68  KVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 67.7 bits (165), Expect = 6e-14
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKL-SIVWLRGSEPIDF----------ESEPRFVQS 361
           +P+D EV  G S TF         LK   + W +G                +S  R  + 
Sbjct: 10  RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69

Query: 362 NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
             + L +T +    +G Y C   T+  F  +   LTV 
Sbjct: 70  YLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 60.8 bits (147), Expect = 2e-11
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLP---EPEIHWVHNGKPISQAPPNPRR------ 175
              F + P+        ++TF  + +G      P + W   GK +  +    +       
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFK-GKWVDLSSKVGQHLQLHDS 62

Query: 176 -----KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
                KV    + I + + + TG+Y C  +    +   +  + V
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 22/104 (21%)

Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPL---PQTIWSKDG-----------VPINPSD 78
           P+   VT    +              G  L   P   W K             + ++ S 
Sbjct: 11  PQDGEVTVGGSITFS-------ARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 79  RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
             +   Y   L I   + +  GSY CEVS         + +L+V
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD-CSNFNLTV 106

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 82.0 bits (203), Expect = 7e-19
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 3/108 (2%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
            P   P + TL Q + ++   V+W     +   G  RGY++       G      ++  K
Sbjct: 14  APDGPPMDVTL-QPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 72

Query: 460 --GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
             G+S    +D     ++    V AFN A  GP S  I+  T E  P 
Sbjct: 73  ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 491 PSEIISFVTPEGVPGTV-QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGT 547
            S      T E  P      +   P+ S +  + W  P  E  NGV+ GY+I Y+     
Sbjct: 2   SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYREN-SP 60

Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                   +   +   +    L  L+   +Y + +  + +AG G  S
Sbjct: 61  GSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSS 107

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 38/143 (26%)

Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
            P   P +V  +  T  ++ ++W A  +   N     Y+I +R ++ G            
Sbjct: 14  APDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGS----------- 62

Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 719
                                     +G+ SI E+    G+S    +D     ++    V
Sbjct: 63  --------------------------NGQYSIVEMKAT-GDSEVYTLDNLKKFAQYGVVV 95

Query: 720 LAFNGAYNGPPSEIISFVTPEGG 742
            AFN A  GP S  I+  T E G
Sbjct: 96  QAFNRAGTGPSSSEINATTLESG 118

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 83.8 bits (207), Expect = 7e-19
 Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 27/186 (14%)

Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP--NRI------- 182
            + I       VTF    S +P  E+ W      +++   +  R      NR+       
Sbjct: 2   SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 183 --TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
             TI NL  SD   Y   + N    +   +YV  +   P I          +     LTC
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMI--------YWECSNATLTC 112

Query: 241 RVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG 300
            V      E+     ++ L   R          ++         + C A N++       
Sbjct: 113 EVLEGTDVELKLYQGKEHLRSLR-------QKTMSYQWTNLRAPFKCKAVNRVSQESEME 165

Query: 301 SLTVKE 306
            +   E
Sbjct: 166 VVNCPE 171

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 63.8 bits (155), Expect = 5e-12
 Identities = 27/158 (17%), Positives = 46/158 (29%), Gaps = 30/158 (18%)

Query: 59  GTPLPQTIWSKDGVPI------------NPSDRISQGNYGKSLIIKHVEFSDQGSYTCEV 106
             PL + +W K    +            +  +R+       SL I ++  SD+  Y  E 
Sbjct: 20  NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79

Query: 107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI 166
            N     K     L VL      V    I   E    T  C+     + E+      + +
Sbjct: 80  PNITDTMK---FFLYVLEM----VSKPMIY-WECSNATLTCEVLEGTDVELKLYQGKEHL 131

Query: 167 SQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG 204
                         + T+     +    + C A N + 
Sbjct: 132 RS----------LRQKTMSYQWTNLRAPFKCKAVNRVS 159

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 63.4 bits (154), Expect = 7e-12
 Identities = 29/191 (15%), Positives = 52/191 (27%), Gaps = 36/191 (18%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--------------TGGRYTILETG 270
            +  Y V    V         P  EV W   + ++                  Y    +G
Sbjct: 2   SQQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCN 330
            L I ++  +D  EY   + N   T      L V E        +        +AT  C 
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTM--KFFLYVLEMV-----SKPMIYWECSNATLTCE 113

Query: 331 AVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI 390
            +      + +   +G E +           +    T++         + C+A   +   
Sbjct: 114 VLEGTD--VELKLYQGKEHL----------RSLRQKTMSYQWTNLRAPFKCKAVNRVS-- 159

Query: 391 EAQATLTVQVP 401
           +      V  P
Sbjct: 160 QESEMEVVNCP 170

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 7/82 (8%), Positives = 22/82 (26%), Gaps = 10/82 (12%)

Query: 41  KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG 100
           K  +        L C        +    +    +    +           + +   + + 
Sbjct: 98  KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------KTMSYQWTNLRA 148

Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
            + C+  N V + +S    ++ 
Sbjct: 149 PFKCKAVNRVSQ-ESEMEVVNC 169

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 81.3 bits (201), Expect = 1e-18
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
              S         GVP T   L    LG ++  + W +P      L GY ++YQ + G +
Sbjct: 3   SGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPR-CERPLQGYSVEYQLLNGGE 61

Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
           +  L      I +P  TS  +  L P+  Y   +   ++ G G E 
Sbjct: 62  LHRLN-----IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRER 102

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 84.1 bits (208), Expect = 1e-18
 Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 17/185 (9%)

Query: 510 LEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK-------VGPLLERLPYISDP 562
                L   +  L+W+ P      ++ +K++Y+ V   K         P  +        
Sbjct: 8   PNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELG 67

Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES---------KYLFYVPFKNPDNVEGRGS 613
            + +A +  L+P   YR  +       D  ES               P   P+ +E    
Sbjct: 68  KSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEY 127

Query: 614 TPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQP 673
           +   +V+ W+             Y  ++R  ++   + +  +         +A   T   
Sbjct: 128 SETAVVLHWSL-ASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATM 186

Query: 674 YEIKV 678
           YE K+
Sbjct: 187 YEFKL 191

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 35/193 (18%), Positives = 56/193 (29%), Gaps = 24/193 (12%)

Query: 419 AVVSWNPVSPQSLRGHFRGYKVQ--------TWTE--KDGEGSIRELIVNKGESTTTEVD 468
            ++ W    P++       +KVQ         W     +      +     G+S T  V 
Sbjct: 18  VMLRWMV--PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVT 75

Query: 469 KFVPASK-NFARVLAFNGAYNGPPSEIISFVT-----PEGVPGTVQSLEAIPLGSSAFYL 522
              P     F R+LA     +   S   +                + LE      +A  L
Sbjct: 76  DLKPQHTYRF-RILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVL 134

Query: 523 KWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH 581
            W      +  ++ GY   Y+                I      S K+A LE +T Y   
Sbjct: 135 HWSLASDADEHLITGYYAYYRPSSSAGEYFKAT----IEGAHARSFKIAPLETATMYEFK 190

Query: 582 LAGYTKAGDGAES 594
           L  ++ A     S
Sbjct: 191 LQSFSAASASEFS 203

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 5/107 (4%)

Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHF-RGYKVQTWTEKDGEGSI 452
                  P+  P     I+       V+ W+         H   GY    +      G  
Sbjct: 108 QPGAALDPMPVPELLE-IEEYSETAVVLHWSL--ASDADEHLITGYYAY-YRPSSSAGEY 163

Query: 453 RELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
            +  +    + + ++     A+    ++ +F+ A     S +    T
Sbjct: 164 FKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT 210

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 85.7 bits (211), Expect = 2e-18
 Identities = 42/292 (14%), Positives = 75/292 (25%), Gaps = 30/292 (10%)

Query: 129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR 188
           +V P  +      +V   C  S      +       P+ +         G NR   E   
Sbjct: 3   SVSPSKVILPRGGSVLVTCSTSCDQPKLLGI---ETPLPKKELLLP---GNNRKVYELSN 56

Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG---A 245
             +     C +    G      ++ V      +  AP   +   GK + L C+V G    
Sbjct: 57  VQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR 116

Query: 246 PKPEVNWIHNQKELTGGRYTI-LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
               V  +  +KEL               +          ++C     L           
Sbjct: 117 ANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176

Query: 305 KEHTHITDQ---------PEDYEVEAGQSATFRCNAVSD-PSLKLSIVWLRGSEPIDFES 354
                +                 +E     T  C+     P  +  +    G + ++   
Sbjct: 177 SAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN--- 233

Query: 355 EPRFVQSNDYSLTVTKSSEL---DSG--QYTCRAQTELDFIEAQATLTVQVP 401
               V   + S +   S  +   D G  + TC         E   T+T+   
Sbjct: 234 --PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF 283

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 77.2 bits (189), Expect = 1e-15
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 15/190 (7%)

Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH--NQKELTGGRYTILETGDLKITDV 277
           + + +P       G +V++TC         +       +KEL             ++++V
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKV---YELSNV 57

Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVK---EHTHITDQPEDYEVEAGQSATFRCNAV-S 333
              +  +  C++    G +     LTV    E   +   P       G++ T RC     
Sbjct: 58  Q--EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSW--QPVGKNLTLRCQVEGG 113

Query: 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ 393
            P   L++V LRG + +    EP   +  + + TV    +     ++CR + +L     +
Sbjct: 114 APRANLTVVLLRGEKELK--REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE 171

Query: 394 ATLTVQVPLE 403
                  P +
Sbjct: 172 LFENTSAPYQ 181

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 22/208 (10%), Positives = 46/208 (22%), Gaps = 16/208 (7%)

Query: 30  RHAPKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTI--WSKDGVPINPSDRISQGNYG 86
              P++  +          K + L C + GG P         +    +     + +    
Sbjct: 83  YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA-E 141

Query: 87  KSLIIKHVEFSDQGSYTCEVSNGVGEAKSY-------SIDLSVLAAPYFTVEPEFINAAE 139
            +  +         +++C     +                L     P    +       E
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201

Query: 140 E-ETVTFECKASGLP---EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNY 195
                T  C   GL    E ++H     + ++                        T   
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 261

Query: 196 GCNATNSLGYVYKDVYVNVLAH-APEIT 222
            C              V + +  AP + 
Sbjct: 262 TCAVILGNQSQETLQTVTIYSFPAPNVI 289

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 218 APEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKEL----TGGRYTILETGDL 272
              I +    +  VD G TV   CR  G P P + W+  +K L    + GR T+   G L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           ++      D+G Y C A N  G       L V+
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 78.2 bits (193), Expect = 3e-15
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 119 DLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG 178
             +   A     + + +   E  TV F C+A G P P I W+   K +  A  N R  V 
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF 438

Query: 179 PNRI-TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           P+    +   +  D G Y C A N+ G      +++V
Sbjct: 439 PDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 7e-10
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEP-IDFESEPRFVQSNDYSLTV 368
              + +   V+ G +  F C A  DP    +I+WL   +  +  +S  R     D +L V
Sbjct: 388 RDRKAQQVFVDEGHTVQFVCRADGDP--PPAILWLSPRKHLVSAKSNGRLTVFPDGTLEV 445

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
             +   D+G Y C A          A L V+
Sbjct: 446 RYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 32  APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG---VPINPSDRISQGNYGKS 88
             + +    ++        V+  C   G P P  +W       V    + R++    G +
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-T 442

Query: 89  LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
           L +++ +  D G+Y C  +N  G   S    L V
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGND-SMPAHLHV 475

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 88.8 bits (219), Expect = 2e-18
 Identities = 88/692 (12%), Positives = 159/692 (22%), Gaps = 136/692 (19%)

Query: 158 HWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH 217
           ++  +G+ +   PP          +            +  +  +      +      + H
Sbjct: 230 NFYLDGRCVETCPPPYYHFQDWRCVNFS---------FCQDLHHKCKNSRRQGCHQYVIH 280

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEV-------NWIHNQKELTGGRYTILETG 270
             +        YT++   +   C     P P+V         I +       R   +  G
Sbjct: 281 NNKCIPECPSGYTMNSSNL--LCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338

Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP-----EDYEVEAGQSA 325
            L I      +           +     SG L ++    +              E  +  
Sbjct: 339 SLIINIRGGNNLAAELEANLGLIEEI--SGYLKIRRSYALVSLSFFRKLRLIRGETLEIG 396

Query: 326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
            +   A+ + +L+   +W      +       F   N     +  S      + +     
Sbjct: 397 NYSFYALDNQNLR--QLWDWSKHNLTITQGKLFFHYNPK---LCLSEIHKMEEVSGTKGR 451

Query: 386 ELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQ---- 441
           +     A  T   Q   E              K ++ W P  P   R    G+ +     
Sbjct: 452 QERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRD-LLGFMLFYKEA 510

Query: 442 -----------------TWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN 484
                            +WT  D +  +R             +    P ++    V    
Sbjct: 511 PYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLV 570

Query: 485 GA-----YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKI 539
                    G  S+II   T    P       ++   SS   LKW  P  PNG +  Y +
Sbjct: 571 TFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLV 630

Query: 540 KYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYL-- 597
            ++          L  L Y               PS  +                     
Sbjct: 631 FWERQAED---SELFELDYCLKGL--------KLPSRTWSPPFESEDSQKHNQSEYEDSA 679

Query: 598 ---FYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDD 654
                 P  +   ++    +             +    P  K R      N G       
Sbjct: 680 GECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRP 739

Query: 655 V-LDWRQSELVLANQPTFQPYEIKV-------------------VQT------------- 681
                 +  LV++    F  Y I++                    +T             
Sbjct: 740 FEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPV 799

Query: 682 -------------WTE-KDGEGSIRELIVNKGESTTTEVDKFVPASKN------------ 715
                        W E K+  G I    V+       E+                     
Sbjct: 800 THEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLS 859

Query: 716 ----FARVLAFNGAYNGPPSEIISFVTPEGGT 743
                 R+ A + A NG  +E   F   +   
Sbjct: 860 PGNYSVRIRATSLAGNGSWTEPTYFYVTDYLD 891

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 48.4 bits (114), Expect = 8e-06
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 395 TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRE 454
           T+      +     T  ++ +     + W    P+   G    Y+V      D E  + +
Sbjct: 786 TMPEAKADDIVGPVT-HEIFENNVVHLMWQE--PKEPNGLIVLYEVSYRRYGDEELHLCD 842

Query: 455 LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG--VPGTV 507
              +        +    P + +  R+ A + A NG  +E   F   +   VP  +
Sbjct: 843 TRKHFALERGCRLRGLSPGNYSV-RIRATSLAGNGSWTEPTYFYVTDYLDVPSNI 896

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL-----TGGRYTILETGDL 272
           AP I +AP+D    +G+   L CR    P   V W+     +        R ++L  G L
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH 309
             + V  +D+G YTC   N  G +  S  L V     
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPNR-I 182
           AP+    P  +N +E      +C+    P   + W+  NG  +S A  +PR  V  +  +
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
              ++  SDTG Y C  TN  G      Y+NV
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 7/106 (6%)

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL--RGSEPIDFESEPRFVQSND 363
               I D P D  +  G+ A  +C      S    + WL   G+        PR    ND
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLND 406

Query: 364 YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV-PLEAPSNF 408
            +L  +     D+G YTC          A A L V         + 
Sbjct: 407 GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHHH 452

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKD-GVPINPS---DRISQGNYGKSLIIKHVEFSDQG 100
               +  EL C     P+    W    G  ++ +    RIS  N G +L   HV  SD G
Sbjct: 364 ISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG-TLNFSHVLLSDTG 420

Query: 101 SYTCEVSNGVGEAKSYSIDLSVLAAP 126
            YTC V+N  G + + S  L+V  A 
Sbjct: 421 VYTCMVTNVAGNS-NASAYLNVSTAG 445

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 78.9 bits (195), Expect = 4e-18
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKI 274
            E+ +         G+T      +   P     W    + L       I+E G    L +
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            +     +GE +  A       + + +L VKE
Sbjct: 65  HNCQLGMTGEVSFQA----ANTKSAANLKVKE 92

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 64.6 bits (158), Expect = 5e-13
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
           A          +     ET  FE + S  P+    W   G+P++    +P  ++  +   
Sbjct: 4   ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLA---ASPDCEIIEDGKK 59

Query: 181 -RITIENLRKSDTGNYGCNATNS 202
             + + N +   TG     A N+
Sbjct: 60  HILILHNCQLGMTGEVSFQAANT 82

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
            +       EV  G++A F    +S+P +     W    +P+   + P      D   + 
Sbjct: 7   EVEKPLYGVEVFVGETAHFEI-ELSEPDVH--GQWKLKGQPL--AASPDCEIIEDGKKHI 61

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           L +       +G+ + +A       ++ A L V+
Sbjct: 62  LILHNCQLGMTGEVSFQAANT----KSAANLKVK 91

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 3/72 (4%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSY 102
               +           P     W   G P+  S        GK   LI+ + +    G  
Sbjct: 17  VFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEV 75

Query: 103 TCEVSNGVGEAK 114
           + + +N    A 
Sbjct: 76  SFQAANTKSAAN 87

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 79.8 bits (197), Expect = 4e-18
 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
           +   S   +  +   +P   + +  + + S    L W  P +  G +  + + +      
Sbjct: 2   SSGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDN 61

Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
           +     ER    + P +    +  L+P   Y   +  Y + G G  S
Sbjct: 62  R-----ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESS 103

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIR 453
           A  +  V   AP +   + V  ++   +SW P  P   +G+ + + V    E D     R
Sbjct: 10  AIPSSSVLPSAPRDVVPVLV-SSRFVRLSWRP--PAEAKGNIQTFTVFFSREGDNRE--R 64

Query: 454 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
            L   +  S    V    P +    RV+A+N    G  S+ I   T     
Sbjct: 65  ALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESG 115

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 13/96 (13%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTILETGD-- 271
             I    +D+    G  V +   V      +V W+ N  ELT       RY   + G   
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            L  +DV   D G Y          A+    L V+E
Sbjct: 68  ILIFSDVVQEDRGRYQVITNGGQCEAE----LIVEE 99

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 6/84 (7%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR----KVGP 179
                    E       + V    + S     ++ W+ NG  +++      R    K G 
Sbjct: 7   GPVLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGK 65

Query: 180 NRI-TIENLRKSDTGNYGCNATNS 202
             I    ++ + D G Y       
Sbjct: 66  RHILIFSDVVQEDRGRYQVITNGG 89

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI--DFESEPR 357
           GS        I    ED +V  G         VS+      ++W++    +  +   + R
Sbjct: 1   GSSGSSGPVLIVTPLEDQQVFVGDRVEMAV-EVSEE--GAQVMWMKNGVELTREDSFKAR 57

Query: 358 FVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           +    D   + L  +   + D G+Y           + +A L V+  
Sbjct: 58  YRFKKDGKRHILIFSDVVQEDRGRYQVITNGG----QCEAELIVEEK 100

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD------RISQGNYGKSLIIKHVEFSD 98
                +VE+          Q +W K+GV +   D      R  +      LI   V   D
Sbjct: 20  VFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQED 78

Query: 99  QGSYTCEVSNGVGEAK 114
           +G Y    + G  EA+
Sbjct: 79  RGRYQVITNGGQCEAE 94

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 84.6 bits (208), Expect = 5e-18
 Identities = 46/297 (15%), Positives = 81/297 (27%), Gaps = 20/297 (6%)

Query: 308 THITDQPEDYEVEAGQSATFRC---NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY 364
            HI+       V  G   T  C      S    +  I+W  G+E      + R       
Sbjct: 3   GHIS--VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQE 60

Query: 365 S-LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSW 423
           S +T+   +   +             I  Q  L    P   P N + +  +     +  W
Sbjct: 61  SIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQW 120

Query: 424 NPVSPQSLRGHFR-GYKVQTWTEKDGEGSIRELIVNKGE-STTTEVDKFVPASKNFARVL 481
            P     L   F           +    SI + +   G+   +      +        V 
Sbjct: 121 EPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQ 180

Query: 482 AFNGA-------YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVL 534
           A N             P +++    P          EA P  +    L W   +    + 
Sbjct: 181 AENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSP-EAAPPQAGCLQLSWEPWQPGLHIN 239

Query: 535 MGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
              +++++  +G         L           +L GL P+T Y + +        G
Sbjct: 240 QKCELRHKPQRGEAS----WALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPG 292

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 53.0 bits (126), Expect = 1e-07
 Identities = 38/311 (12%), Positives = 82/311 (26%), Gaps = 36/311 (11%)

Query: 225 PKDEYTVDGKTVVLTCRV-----FGAPKPEVNWIHNQKELTGGRYTILETG----DLKIT 275
                   G  +  +C +        P+P++ W    +   GGR   L  G     + + 
Sbjct: 7   VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLP 66

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEA-GQSATFRC--NAV 332
            +    +                   L      +    P +        +++  C     
Sbjct: 67  HLNHTQAFLSCSLNWGNSLQILDQVELRA---GYPPAIPHNLSCLMNLTTSSLICQWEPG 123

Query: 333 SDPSLKLSIVWLRGSEPIDFESE-----PRFVQSNDYSLTVTKSSELDSGQYT--CRAQT 385
            +  L  S          + +++         +      ++ +   L         +A+ 
Sbjct: 124 PETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAEN 183

Query: 386 ELDFIE---AQATLTVQVPLEAPSNFTLIQVIDAKKA-----VVSWNPVSPQSLRGHFRG 437
            L               V LE P   T+    +A         +SW P  P         
Sbjct: 184 ALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK-- 241

Query: 438 YKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---I 494
            +++   ++  E S   +     E+   E+   +PA+    ++        G  S+    
Sbjct: 242 CELRHKPQRG-EASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPS 300

Query: 495 ISFVTPEGVPG 505
           +   T E    
Sbjct: 301 LELRTTERAAA 311

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 78.6 bits (194), Expect = 6e-18
 Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 218 APEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---L 272
                +     Y VD G  V     +   PK EV W  N +E+    +Y     G    L
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            I +    D  EY   A    G  + S  L V+ 
Sbjct: 66  FINNCQMTDDSEYYVTA----GDEKCSTELFVRS 95

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND-YSLTVTKSS 372
              Y+V+ G    F    ++DP L+  + W +  + I   ++  F        L +    
Sbjct: 15  DPAYQVDKGGRVRFVVE-LADPKLE--VKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQ 71

Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQVP 401
             D  +Y   A  E    +    L V+  
Sbjct: 72  MTDDSEYYVTAGDE----KCSTELFVRSG 96

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSY 102
             +  +V         P  +  W K+G  I PS +         + L I + + +D   Y
Sbjct: 20  VDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEY 78

Query: 103 TCEVSNGVGEAKSYSIDLSVLAAP 126
                   G+ K  S +L V + P
Sbjct: 79  YVT----AGDEKC-STELFVRSGP 97

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 124 AAPYFTVE-PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----G 178
           +   F           +   V F  + +  P+ E+ W  NG+ I    P+ +        
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIR---PSTKYIFEHKGC 61

Query: 179 PNRITIENLRKSDTGNYGCNATNS 202
              + I N + +D   Y   A + 
Sbjct: 62  QRILFINNCQMTDDSEYYVTAGDE 85

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 78.6 bits (194), Expect = 7e-18
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
             IT+  K    ++G++    C +   +      W    K +    R+     G    L 
Sbjct: 9   VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           + + A +D+GE     R     A     L V+E
Sbjct: 69  VREAAPSDAGEVVFSVRGLTSKAS----LIVRE 97

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
           GS     H  IT + +  EV  G+S +F C  +S  S     +W  G + +   S  RF 
Sbjct: 1   GSSGSSGHVGITKRLKTMEVLEGESCSFECV-LSHESASDPAMWTVGGKTV--GSSSRFQ 57

Query: 360 QSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            +     Y L V +++  D+G+     +       ++A+L V+  
Sbjct: 58  ATRQGRKYILVVREAAPSDAGEVVFSVRGL----TSKASLIVRER 98

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 8/85 (9%)

Query: 45  ALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGS 101
            L  +     C +   +     +W+  G  +  S R      G+   L+++    SD G 
Sbjct: 20  VLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGE 79

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
               V     +A      L V    
Sbjct: 80  VVFSVRGLTSKAS-----LIVRERS 99

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 8/86 (9%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKV----G 178
                T   + +   E E+ +FEC  S         W   GK +     + R +      
Sbjct: 7   GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV---GSSSRFQATRQGR 63

Query: 179 PNRITIENLRKSDTGNYGCNATNSLG 204
              + +     SD G    +      
Sbjct: 64  KYILVVREAAPSDAGEVVFSVRGLTS 89

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 78.3 bits (193), Expect = 7e-18
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 212 VNVLAHAPEITEAPKDEYTVD-GKTVVLTCRVF-GAPKPEVNWIHNQKELTGGRYTILET 269
           +   +    +T   +   +V  G  V   C     +P   + W          R  +   
Sbjct: 3   LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AMDFN 61

Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           G L I +V  +D+G Y C   N     QG+ +L V+
Sbjct: 62  GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 74.1 bits (182), Expect = 3e-16
 Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 120 LSVLAAPYFTV--EPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRK 176
           L+  + P      E    +      VTF C A S  P   + W              R  
Sbjct: 3   LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH----NGKLPSRAM 58

Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
                +TI N++ SD G Y C  +N          ++V
Sbjct: 59  DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 67.1 bits (164), Expect = 6e-14
 Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVS-DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
             ++     V  G   TF C A S  P    ++VW R           R +  N   LT+
Sbjct: 13  TVEEQRSQSVRPGADVTFICTAKSKSP--AYTLVWTRLHNGKL---PSRAMDFNG-ILTI 66

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
                 D+G Y C         +  ATL VQV
Sbjct: 67  RNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 51  VELFCI-FGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
           V   C     +P    +W++      PS  +        L I++V+ SD G+Y C  SN 
Sbjct: 28  VTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG---ILTIRNVQPSDAGTYVCTGSNM 84

Query: 110 VGEAKSYSIDLSV 122
                  +  L V
Sbjct: 85  FAMD-QGTATLHV 96

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 78.6 bits (194), Expect = 7e-18
 Identities = 24/93 (25%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
             E+ +   D      +  V  C V    K    W  N  E+    R TI   G    L 
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           I DV   D G+YT        +   S  L   E
Sbjct: 67  IDDVRPEDEGDYTFVPDGYALSL--SAKLNFLE 97

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 67.0 bits (164), Expect = 8e-14
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV 359
           GS        +     D  V+A + A F+C  VSD   K++  W +    +      R  
Sbjct: 1   GSSGSSGQLEVLQDIADLTVKAAEQAVFKC-EVSDE--KVTGKWYKNGVEV--RPSKRIT 55

Query: 360 QSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ-VPLEAPS 406
            S+    + L +      D G YT         +   A L    + +  PS
Sbjct: 56  ISHVGRFHKLVIDDVRPEDEGDYTFVPDGYA--LSLSAKLNFLEIKVSGPS 104

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
                  +   +     E   F+C+ S   +    W  NG  +    P+ R  +      
Sbjct: 7   GQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVR---PSKRITISHVGRF 62

Query: 181 -RITIENLRKSDTGNYGCNATNSLG 204
            ++ I+++R  D G+Y         
Sbjct: 63  HKLVIDDVRPEDEGDYTFVPDGYAL 87

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 6/84 (7%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSY 102
               ++    C           W K+GV + PS R  IS       L+I  V   D+G Y
Sbjct: 20  VKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDY 78

Query: 103 TCEVSNGVGEAKSYSIDLSVLAAP 126
           T             S  L+ L   
Sbjct: 79  TFVPDGYALSL---SAKLNFLEIK 99

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 78.6 bits (194), Expect = 7e-18
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
           +    P TV  +  +     +  L W +PEQPNG+++ Y+I+Y   +        E    
Sbjct: 3   SGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHN------EFNSS 56

Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
           ++   T +A++ GL P   Y + +   T AG G  S
Sbjct: 57  MARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFS 92

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 403 EAPSNFTLIQV--IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
             PS   ++       +   +SW    P+   G    Y+++ + ++  E +     + + 
Sbjct: 6   SGPSTVPIMHQVSATMRSITLSWPQ--PEQPNGIILDYEIRYYEKEHNEFNSS---MARS 60

Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
           ++ T  +D   P      +V A   A  G  S  + F T     
Sbjct: 61  QTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSG 104

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 79.1 bits (195), Expect = 9e-18
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 1/105 (0%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
            P  AP N T+     +    + W     +   G   GY++    +  G      L    
Sbjct: 17  APSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISK-ELLEEVG 75

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
              +   +   V  +    R+ A      GP S+ +    P    
Sbjct: 76  QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSG 120

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 76.4 bits (188), Expect = 8e-17
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 489 GPPSEIISFVTPEGVP-GTVQSLEA-IPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSV 544
              S  I   T EG P     ++   +   S    ++W+KP  +Q +G L+GY+I +   
Sbjct: 3   SGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQ 62

Query: 545 KGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                  LLE +        + A+++    +    + +A  T+ G G  S
Sbjct: 63  SAGISKELLEEVG----QNGSRARISVQVHNATCTVRIAAVTRGGVGPFS 108

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 20/144 (13%), Positives = 35/144 (24%), Gaps = 42/144 (29%)

Query: 600 VPFKNPDNVE-GRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDW 658
            P   P NV      + +N+ I W   P  + +     YRI     + G +    + +  
Sbjct: 17  APSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQ 76

Query: 659 RQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR 718
             S   ++ Q       +                                         R
Sbjct: 77  NGSRARISVQVHNATCTV-----------------------------------------R 95

Query: 719 VLAFNGAYNGPPSEIISFVTPEGG 742
           + A      GP S+ +    P   
Sbjct: 96  IAAVTRGGVGPFSDPVKIFIPAHS 119

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 79.8 bits (197), Expect = 2e-17
 Identities = 27/196 (13%), Positives = 65/196 (33%), Gaps = 23/196 (11%)

Query: 396 LTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL 455
           +     L+ P +   +         + W           F  Y++  +    G+ +  E+
Sbjct: 1   INAGTDLDNPKDLE-VSDPTETTLSLRWRRPV-----AKFDRYRLT-YVSPSGKKNEMEI 53

Query: 456 IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPL 515
            V+   ST+  +      ++    ++A  G +   P+     +    V G+ + +    +
Sbjct: 54  PVD---STSFILRGLDAGTEYTISLVAEKGRHKSKPTT----IKGSTVVGSPKGISFSDI 106

Query: 516 GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 575
             ++  + W     P   +  Y++ Y  + G     +        D + T  KL  L P 
Sbjct: 107 TENSATVSW---TPPRSRVDSYRVSYVPITGGTPNVV------TVDGSKTRTKLVKLVPG 157

Query: 576 TKYRIHLAGYTKAGDG 591
             Y +++       + 
Sbjct: 158 VDYNVNIISVKGFEES 173

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 69.4 bits (170), Expect = 8e-14
 Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 17/182 (9%)

Query: 498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP 557
           +         + LE      +   L+W    +P      Y++ Y S  G K         
Sbjct: 1   INAGTDLDNPKDLEVSDPTETTLSLRW---RRPVAKFDRYRLTYVSPSGKKN-------E 50

Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNN 617
                 +TS  L GL+  T+Y I L           +         +P  +     T N+
Sbjct: 51  MEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENS 110

Query: 618 LVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIK 677
             +SWT        +    YR+ +     G        +D  ++   L        Y + 
Sbjct: 111 ATVSWTP-----PRSRVDSYRVSYVPITGGTPNVVT--VDGSKTRTKLVKLVPGVDYNVN 163

Query: 678 VV 679
           ++
Sbjct: 164 II 165

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 26/187 (13%)

Query: 327 FRCNAVSDPSLKLSIVWLRGSEPIDF----------ESEPRFVQSNDYSLTVTKSSELDS 376
              +  ++ +L L   W R     D           +     +  +  S  +     LD+
Sbjct: 13  LEVSDPTETTLSLR--WRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILR---GLDA 67

Query: 377 G-QYTCRAQTELDFIEAQA-TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH 434
           G +YT     E    +++  T+     + +P   +   +     A VSW P         
Sbjct: 68  GTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDI-TENSATVSWTPPR-----SR 121

Query: 435 FRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 494
              Y+V ++    G G+   + V+ G  T T++ K VP       +++  G     P   
Sbjct: 122 VDSYRV-SYVPITG-GTPNVVTVD-GSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISG 178

Query: 495 ISFVTPE 501
           I     +
Sbjct: 179 ILKTALD 185

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 82.2 bits (202), Expect = 3e-17
 Identities = 59/299 (19%), Positives = 99/299 (33%), Gaps = 26/299 (8%)

Query: 304 VKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSI-----VWLRGSEPIDFESEPRF 358
           +    +I+  PE   V+   + T  C           +     VW      I    E   
Sbjct: 3   LDPCGYIS--PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP--KEQYT 58

Query: 359 VQSNDYSLTVTKSSELDSGQYTCRAQT--ELDFIEAQATLTVQVPLEAPSNFTLIQVIDA 416
           + +   S          + Q TC   T  +L+      T+   +P E P N + I V + 
Sbjct: 59  IINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCI-VNEG 117

Query: 417 KKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDK-FVPASK 475
           KK    W+      L  +F      T   +       +    +   T+  VD   V    
Sbjct: 118 KKMRCEWDGGRETHLETNF------TLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN 171

Query: 476 NFARVLAFNGAYNGPPSEIISFVTPEGV---PGTVQSLEAIPLGSSAFYLKWVKPEQPNG 532
               V A N       S+ I+F     V   P    S+      SS   L W  P   + 
Sbjct: 172 IEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV 230

Query: 533 VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
           +++ Y I+Y++   +    +    P  +  T +S  +  L+P T+Y   +    + G G
Sbjct: 231 IILKYNIQYRTKDASTWSQI---PPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKG 286

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 66.0 bits (160), Expect = 8e-12
 Identities = 43/296 (14%), Positives = 87/296 (29%), Gaps = 24/296 (8%)

Query: 225 PKDEYTVDGKTVVLTCRV-------FGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277
           P+             C +       F      + W  N   +   +YTI+      +T  
Sbjct: 11  PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 70

Query: 278 AF-ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC--NAVSD 334
              + + + TC         Q    +T+       ++P++      +    RC  +   +
Sbjct: 71  DIASLNIQLTCNILTFGQLEQNVYGITIIS-GLPPEKPKNLSCIVNEGKKMRCEWDGGRE 129

Query: 335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYT--CRAQTELDFI-- 390
             L+ +   L+        ++ +  +    S TV  S+            A+  L  +  
Sbjct: 130 THLETNFT-LKSEWATHKFADCKAKRDTPTSCTVDYSTVYFV-NIEVWVEAENALGKVTS 187

Query: 391 -EAQATLTVQVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTWTEKDG 448
                    +V    P N ++I   +    + ++W    P         Y +Q  T+   
Sbjct: 188 DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN--PSIKSVIILKYNIQYRTKDAS 245

Query: 449 EGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGP---PSEIISFVTPE 501
             S           ++  V    P ++   R+        G     SE  S +T E
Sbjct: 246 TWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE 301

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 76.4 bits (188), Expect = 5e-17
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
           +    P  V  +       S+  L W  P  P+G ++ Y++KY                 
Sbjct: 3   SGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEG-----PSSVR 57

Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
               +   A+L GL+    Y + +   ++AG G   
Sbjct: 58  FLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFG 93

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
           +      A S+  + +        ++W    P++  G    Y+V+ + EK  EG      
Sbjct: 3   SGSSGPPAVSDIRVTRS-SPSSLSLAWAV--PRAPSGAVLDYEVK-YHEKGAEGPSSVRF 58

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT-PEGVPG 505
           +        E+      +    +V A + A  GP  +     T  +  P 
Sbjct: 59  LK-TSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGPS 107

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 75.9 bits (187), Expect = 6e-17
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 9/94 (9%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LKI 274
            +   A ++     G +  L+C V    + EV W  + K+L+   +  +   G    L +
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT 308
                A++GEY+C A    G  Q S  L V    
Sbjct: 71  QQAGQAEAGEYSCEA----GGQQLSFRLQVAGQC 100

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSY 102
           A       L C        +  W KDG  ++ S +  +      + L+++    ++ G Y
Sbjct: 23  AEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEY 81

Query: 103 TCEVSNGVGEAKSYSIDLSVLAAPY 127
           +CE        +     L V    +
Sbjct: 82  SCEAGGQQLSFR-----LQVAGQCF 101

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-- 180
           +           + A    + T  C+ +   + E+ W  +GK +S    + + +V     
Sbjct: 9   VVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLS---SSSKVRVEAVGC 64

Query: 181 --RITIENLRKSDTGNYGCNATNS 202
             R+ ++   +++ G Y C A   
Sbjct: 65  TRRLVVQQAGQAEAGEYSCEAGGQ 88

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 294 GTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE 353
           G++  SG +   +         + + EAG SAT  C  V+    +  + W +  + +   
Sbjct: 1   GSSGSSGKVVFAK---EQPAHREVQAEAGASATLSCE-VAQAQTE--VTWYKDGKKL--S 52

Query: 354 SEPRFVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           S  +           L V ++ + ++G+Y+C A  +    +    L V 
Sbjct: 53  SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ----QLSFRLQVA 97

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGD--- 271
              +T+  +D     G+ V L C V       V W  N +E+  G   RY I   G    
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           L I     AD+ EY+          Q S  L+V  
Sbjct: 66  LIIEGATKADAAEYSVMT----TGGQSSAKLSVDL 96

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
            +T Q ED     G+     C  VS+     ++ W +  E I    + R+    +   + 
Sbjct: 9   MVTKQLEDTTAYCGERVELECE-VSED--DANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
           L +  +++ D+ +Y+          ++ A L+V +    PS
Sbjct: 66  LIIEGATKADAAEYSVMTTGG----QSSAKLSVDLK-SGPS 101

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
           +    T + E   A   E V  EC+ S   +  + W  NG+ I    P  R ++      
Sbjct: 6   SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPG-PKSRYRIRVEGKK 63

Query: 181 -RITIENLRKSDTGNYGCNATNS 202
             + IE   K+D   Y    T  
Sbjct: 64  HILIIEGATKADAAEYSVMTTGG 86

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGNYGKSLIIKHVEFSDQ 99
            A   ++VEL C           W K+G  I P      RI        LII+    +D 
Sbjct: 18  TAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADA 76

Query: 100 GSYTCEVSNGVGEAK 114
             Y+   + G   AK
Sbjct: 77  AEYSVMTTGGQSSAK 91

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 210 VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILE 268
                ++              V  + VVLTC +   P  EV W  + +E+       + +
Sbjct: 5   SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK 63

Query: 269 TGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                 L +  V   DSGEY C           S ++TV E
Sbjct: 64  EDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTE 100

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 23  GISASQNRHAPKQQYVTRKKE--VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR- 79
           G S S              K    A+R ++V L C     P  +  W+KDG  +  S   
Sbjct: 1   GSSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPAL 59

Query: 80  -ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
            + + +  + L++  V+  D G Y CE    + +  + S  ++V   P   +  
Sbjct: 60  LLQKEDTVRRLVLPAVQLEDSGEYLCE----IDDESA-SFTVTVTEPPVRIIYS 108

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 11/92 (11%)

Query: 117 SIDLSVLAAPYFTVEPEF---INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP 173
           S   S      + V P     + A   E V   C+    P  E+ W  +G+ +     +P
Sbjct: 2   SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDGEEV---VESP 57

Query: 174 RRKV----GPNRITIENLRKSDTGNYGCNATN 201
              +       R+ +  ++  D+G Y C   +
Sbjct: 58  ALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD 89

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 59.4 bits (144), Expect = 4e-11
 Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 15/110 (13%)

Query: 298 GSGSLTVKE---HTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES 354
           GS   +  +                   +     C  +  P  +  + W +  E +    
Sbjct: 1   GSSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAE--VRWTKDGEEV--VE 55

Query: 355 EPRFVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            P  +   +     L +      DSG+Y C    E     A  T+TV  P
Sbjct: 56  SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDE----SASFTVTVTEP 101

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 8/93 (8%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD---LK 273
             +I     D+    GK + L C +  +      W  N   +    R  +++ G    L 
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLV 64

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           I +    D G+Y         T      + V  
Sbjct: 65  IANALTEDEGDYVFAPDAYNVTL--PAKVHVIS 95

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGS 101
                K++ L C        +  W+K+G+P+  SDR+     G+   L+I +    D+G 
Sbjct: 18  TVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGD 75

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
           Y                 + V++ P
Sbjct: 76  YVFAPDAYNVTL---PAKVHVISGP 97

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 11/96 (11%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
            I     D  V  G+    +C    +   K    W +   P+  +   R         + 
Sbjct: 9   KILTPLTDQTVNLGKEICLKCEISENIPGK----WTKNGLPV--QESDRLKVVQKGRIHK 62

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           L +  +   D G Y      +   +   A + V   
Sbjct: 63  LVIANALTEDEGDYVFAP--DAYNVTLPAKVHVISG 96

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 9/82 (10%)

Query: 124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--- 180
           +                + +  +C+ S        W  NG P+     + R KV      
Sbjct: 6   SGLKILTPLTDQTVNLGKEICLKCEISE--NIPGKWTKNGLPVQ---ESDRLKVVQKGRI 60

Query: 181 -RITIENLRKSDTGNYGCNATN 201
            ++ I N    D G+Y      
Sbjct: 61  HKLVIANALTEDEGDYVFAPDA 82

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 74.3 bits (182), Expect = 3e-16
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN--WIHNQKELTG------------GRY 264
           P+IT  P+ +  + G  V  TC    +    +   W  + + L              G  
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG-SLTV 304
            +  T  L++ +V F   G Y C   N  G++      LT+
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 72.4 bits (177), Expect = 1e-15
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIH--WVHNGKPISQAPPNPRRKVGP 179
               P  TV+PE  +A     V+F C A+   +  +   W  + + +  A       +  
Sbjct: 7   DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66

Query: 180 NR---------ITIENLRKSDTGNYGCNATNSLGYVY 207
                      + + N+  +  G Y C  +N  G  Y
Sbjct: 67  QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSY 103

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 66.3 bits (161), Expect = 2e-13
 Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 10/100 (10%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY---- 364
            IT QPE      G   +F C+A S     ++  W   +E +       +          
Sbjct: 12  QITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGEL 71

Query: 365 -----SLTVTKSSELDSGQYTCRAQTELDFIEAQ-ATLTV 398
                 L +        G Y C          +  A LT+
Sbjct: 72  MEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 53.9 bits (129), Expect = 4e-09
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 44  VALRNKKVELFCIFGGTPLP--QTIWSKDGVPINPSDRISQ----------GNYGKSLII 91
            A+    V   C    +        W  D   +  ++  +             Y   L +
Sbjct: 21  SAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRL 80

Query: 92  KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
           ++VEF+ +G Y C +SN  G + S    L++
Sbjct: 81  RNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 11/99 (11%)

Query: 499 TPEGVP-GTVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLER 555
           +    P G  Q+L    L +S   L W  P   + NG ++ Y + ++ +   +       
Sbjct: 3   SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQ------- 55

Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
               +  T T   L GL+P T Y I +  +T  G G  S
Sbjct: 56  -ELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLS 93

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 6/101 (5%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
             P   P N   +  +      ++W+P       G    Y V        + + ++ + N
Sbjct: 6   SGPSGFPQNLH-VTGLTTSTTELAWDPPVLAERNGRIISYTVVFR-----DINSQQELQN 59

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
               T   +    P +    +V A+    +GP S  I   T
Sbjct: 60  ITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 20/134 (14%), Positives = 33/134 (24%), Gaps = 45/134 (33%)

Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
           P N+   G T +   ++W      E N     Y + +R  N+ +            +   
Sbjct: 12  PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITT----DTRFT 67

Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
           L        Y+I                                         +V A+  
Sbjct: 68  LTGLKPDTTYDI-----------------------------------------KVRAWTS 86

Query: 725 AYNGPPSEIISFVT 738
             +GP S  I   T
Sbjct: 87  KGSGPLSPSIQSRT 100

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 73.8 bits (181), Expect = 5e-16
 Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 13/121 (10%)

Query: 132 PEFINAAEEETVTFEC---KASGLPEPEIHWVHNGKPISQAP--------PNPRRKVGPN 180
           P  +       +   C      G P P + W+ NG  +++          P     V   
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC 240
            + +      + GNY   A N  G     +    +         P+D       T     
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM--DNPFEFNPEDPIPDTNSTSGDPV 121

Query: 241 R 241
            
Sbjct: 122 E 122

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 73.1 bits (179), Expect = 1e-15
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 14/101 (13%)

Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY-----------T 265
           H P   +       V+     +   V G P P + W+ N   L    +            
Sbjct: 2   HMPASVQL---HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58

Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            +  G L++      ++G YT  A N  G A  S      +
Sbjct: 59  TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 99

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 61.9 bits (150), Expect = 1e-11
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 49  KKVELFCIFG---GTPLPQTIWSKDGVPINPSDRI---------SQGNYGKSLIIKHVEF 96
            ++  +CI     G P P   W  +G  +N +  I         ++      L +     
Sbjct: 13  VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 72

Query: 97  SDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
            + G+YT   +N  G+A S SI  + +  P F   PE
Sbjct: 73  VNNGNYTLLAANPFGQA-SASIMAAFMDNP-FEFNPE 107

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 12/93 (12%)

Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY---------SLTV 368
                       +    P    S+ WL     ++ E+   F +  +           L +
Sbjct: 11  TAVEMHHWCIPFSVDGQP--APSLRWLFNGSVLN-ETSFIFTEFLEPAANETVRHGCLRL 67

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            + + +++G YT  A        A         
Sbjct: 68  NQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 73.6 bits (181), Expect = 6e-16
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKP-EQPNGVLMGYKIKYQSVKGT 547
              S   +  T   +P   + + A  + +    L W  P   P+G  + Y + Y      
Sbjct: 3   SGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIA 62

Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
           +     ER+   S P      +  L P+T Y   +    K G G  S 
Sbjct: 63  R-----ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSA 105

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 6/115 (5%)

Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSL-RGHFRGYKVQTWTEKDGE 449
              A  T      AP +     V   +   ++W    P S   G    Y V  +  K+G 
Sbjct: 7   GEHAPATTGPLPSAPRDVVASLV-STRFIKLTWRT--PASDPHGDNLTYSV--FYTKEGI 61

Query: 450 GSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
              R    +        +   +PA+    RV+A N   +G  S  +   T     
Sbjct: 62  ARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESG 116

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 74.9 bits (184), Expect = 8e-16
 Identities = 26/179 (14%), Positives = 46/179 (25%), Gaps = 29/179 (16%)

Query: 131 EPEFINAAEEETVTFECKASGLPEPE------------IHWVHNGKPISQAPP-NPRRKV 177
               +NA     VT       L   +            + +  NGK          R  +
Sbjct: 5   SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64

Query: 178 GPN--RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKT 235
                 + I N+ K D G+Y     +        + + V           K     +   
Sbjct: 65  DKTNGALRIYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEMVS------KPMIYWECSN 117

Query: 236 VVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLG 294
             LTC V      E+     ++ L              ++         + C A N++ 
Sbjct: 118 ATLTCEVLEGTDVELKLYQGKEHLR-------SLRQKTMSYQWTNLRAPFKCKAVNRVS 169

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 70.3 bits (172), Expect = 4e-14
 Identities = 25/193 (12%), Positives = 50/193 (25%), Gaps = 26/193 (13%)

Query: 31  HAPKQQYVTRKKEVALR-----NKKVELFCIFGGTPLPQTIWSKDGVPINP----SDRIS 81
            +           V L          +       T      +  +G          DR+ 
Sbjct: 4   QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63

Query: 82  QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE 141
                 +L I +V   D+G Y   + +   +   + I + V        +P      E  
Sbjct: 64  LDKTNGALRIYNVSKEDRGDYYMRMLHETED--QWKITMEVYEMVS---KPMIY--WECS 116

Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
             T  C+     + E+      + +              + T+     +    + C A N
Sbjct: 117 NATLTCEVLEGTDVELKLYQGKEHLRS----------LRQKTMSYQWTNLRAPFKCKAVN 166

Query: 202 SLGYVYKDVYVNV 214
            +    +   VN 
Sbjct: 167 RVSQESEMEVVNC 179

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 38/198 (19%)

Query: 222 TEAPKDEYTVDGKTVVLTCRV------------FGAPKPEVNWIHNQKELT-----GGRY 264
            ++  +   + G  V LT                   +  + +  N K+         R 
Sbjct: 3   DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRV 62

Query: 265 TIL-ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQ 323
            +    G L+I +V+  D G+Y     ++    Q   ++ V E        +        
Sbjct: 63  DLDKTNGALRIYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEMV-----SKPMIYWECS 116

Query: 324 SATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
           +AT  C  +    ++L     +G E +           +    T++         + C+A
Sbjct: 117 NATLTCEVLEGTDVELK--LYQGKEHL----------RSLRQKTMSYQWTNLRAPFKCKA 164

Query: 384 QTELDFIEAQATLTVQVP 401
              +   +      V  P
Sbjct: 165 VNRVS--QESEMEVVNCP 180

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 23/131 (17%)

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE---------SEPRF-----V 359
             +     G + T         S +  + WL  +     E          E  F     +
Sbjct: 6   VPNVNAITGSNVTLTILKHPLASYQ-RLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64

Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAP------SNFTLI-Q 412
              + +L +   S+ D G Y  R   E    + + T+ V   +  P      SN TL  +
Sbjct: 65  DKTNGALRIYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEMVSKPMIYWECSNATLTCE 123

Query: 413 VIDAKKAVVSW 423
           V++     +  
Sbjct: 124 VLEGTDVELKL 134

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV 457
             P  AP + T+I      +AV VSW P  P    G    Y +    +K+       +  
Sbjct: 6   SGPTSAPKDLTVITREGKPRAVIVSWQP--PLEANGKITAYILFYTLDKNIPIDDWIMET 63

Query: 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
             G+  T ++      +  + R+ A N    GP S+ I F T +   
Sbjct: 64  ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 4/95 (4%)

Query: 500 PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
           P   P  +  +        A  + W  P + NG +  Y + Y   K     P+ + +   
Sbjct: 8   PTSAPKDLT-VITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNI---PIDDWIMET 63

Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                 + ++  L   T Y   +      G G  S
Sbjct: 64  ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLS 98

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 12/62 (19%), Positives = 24/62 (38%)

Query: 679 VQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 738
           +    +K+       +    G+  T ++      +  + R+ A N    GP S+ I F T
Sbjct: 46  LFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105

Query: 739 PE 740
            +
Sbjct: 106 LK 107

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 74.3 bits (182), Expect = 2e-15
 Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 27/196 (13%)

Query: 129 TVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPP---------------N 172
           ++ P  +N    E+VT   +     +   I W+ N   ++   P                
Sbjct: 2   SLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQG 61

Query: 173 PRRKVGPNR-ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV 231
            R     +  + + NL+  DTG+Y    +           + +L     I      +   
Sbjct: 62  KRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQ 121

Query: 232 DGK-TVVLTCRVFGA-PKPEVNWIHNQKEL-TGGRYTILETGDLKITDVAFADSGEYTCF 288
           +    + LTC V  A       W      L +    T+     +           +YTC 
Sbjct: 122 NMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRIS-------SEQDYTCI 174

Query: 289 ARNKLGTAQGSGSLTV 304
           A N +     S S   
Sbjct: 175 AENAVSNLSFSVSAQK 190

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 67.7 bits (165), Expect = 4e-13
 Identities = 31/192 (16%), Positives = 53/192 (27%), Gaps = 29/192 (15%)

Query: 44  VALRNKKVELFCIF-GGTPLPQTIWSKDGVPI---------NPSDRISQGNYGK------ 87
             +  + V L   F  G  +    W  +   +         +P   ++    GK      
Sbjct: 9   NGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ 68

Query: 88  --SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEE-ETVT 144
             SL + +++  D GSY  ++S       S      +       V             + 
Sbjct: 69  SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELH 128

Query: 145 FECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL 203
             C            W   G  +S           PN     + R S   +Y C A N++
Sbjct: 129 LTCSVEDADDNVSFRWEALGNTLS---------SQPNLTVSWDPRISSEQDYTCIAENAV 179

Query: 204 GYVYKDVYVNVL 215
             +   V    L
Sbjct: 180 SNLSFSVSAQKL 191

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 32/204 (15%), Positives = 65/204 (31%), Gaps = 38/204 (18%)

Query: 221 ITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELT------------------- 260
           ++  P     + G++V L      G     + W+ N+  L                    
Sbjct: 1   MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQ 60

Query: 261 GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT---HITDQPEDY 317
           G R    ++  L+++++   D+G Y      K      S +L +        +T+  +  
Sbjct: 61  GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQ-L 119

Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDS- 376
                      C+ V D    +S  W      +  +           +LTV+    + S 
Sbjct: 120 FQNMTCELHLTCS-VEDADDNVSFRWEALGNTLSSQP----------NLTVSWDPRISSE 168

Query: 377 GQYTCRAQTELDFIEAQATLTVQV 400
             YTC A+  +       +++ Q 
Sbjct: 169 QDYTCIAENAVS--NLSFSVSAQK 190

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 17/113 (15%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF----------------E 353
           ++  P       G+S T      +   +   I WL     + F                +
Sbjct: 1   MSLTPLMVNGILGESVTLPLEFPAGEKVN-FITWLFNETSLAFIVPHETKSPEIHVTNPK 59

Query: 354 SEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
              R   +  YSL ++     D+G Y  +  T+     +  TL +   L    
Sbjct: 60  QGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQ 112

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 12/119 (10%)

Query: 131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS 190
           +     A   +T+T  C        ++    + + +     N    V    +  + ++  
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311

Query: 191 DTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE 249
           D G Y C A          V + V              +T+ G    L         P+
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVY------------NFTLHGHHDTLNAAADPWSHPQ 358

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 5e-14
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 3/88 (3%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKITDVAFAD 281
                   G T+ + C        +V    + +++          +  GDL    V   D
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVED 312

Query: 282 SGEYTCFARNKLGTAQGSGSLTVKEHTH 309
            G YTC+A  +      S  L V   T 
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTL 340

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
           +   +E   G + T RC+       K  +     +E +  +     V   +  L   K  
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTK--VWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309

Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTL 410
             D G YTC A  E         L V        + TL
Sbjct: 310 VEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTL 347

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 17/109 (15%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSD---RISQGNYGKSLIIKHVEFSDQGSYTCEVS 107
           + + C      + +   S     +        +S  N G  L  K V+  D G YTC   
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN-G-DLFFKKVQVEDGGVYTCYAM 321

Query: 108 NGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPE 156
                  + S++L V                     T    A     P+
Sbjct: 322 GETFNE-TLSVELKVYNFT-----------LHGHHDTLNAAADPWSHPQ 358

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 78.0 bits (192), Expect = 4e-15
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 4/105 (3%)

Query: 204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-GG 262
            Y  +D + +     P     P      +G++    CRV  +  P V W  + +EL    
Sbjct: 468 EYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV 527

Query: 263 RYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
           +Y     G+   L I  V   D GEYT  A+N  GT +    L V
Sbjct: 528 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT-- 183
           P F V+P      E ++  F C+      P + W  + + + Q+     ++   N     
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS-VKYMKRYNGNDYGLT 541

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           I  ++  D G Y   A NS G   + V++NV
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCEVSN 108
              +C    +  P   W KD   +  S +           L I  V+  D+G YT    N
Sbjct: 500 ANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559

Query: 109 GVGEAKSYSIDLSV 122
             G  +   + L+V
Sbjct: 560 SYGTKEE-IVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 305 KEHTHITDQPEDYEVEAGQSATFRC--NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQS- 361
           +       +P   EV  GQSA F C   A S P     + W +    +  +   ++++  
Sbjct: 480 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPV----VTWHKDDREL--KQSVKYMKRY 533

Query: 362 --NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
             NDY LT+ +    D G+YT RA+      E    L V
Sbjct: 534 NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 70.6 bits (173), Expect = 5e-15
 Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 11/108 (10%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKG 546
              S  ++  T +  P             +   L W  VK  +    + GYK+ Y++   
Sbjct: 3   SGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQ 62

Query: 547 TKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
             V             T  ++    L     Y I +   T  GDG  S
Sbjct: 63  NNV---------QVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSS 101

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 58.7 bits (142), Expect = 8e-11
 Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 11/109 (10%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
            P + P N          K +++W  V          GYKV   T       +       
Sbjct: 17  PPSQPPGNVVWN--ATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVL------ 68

Query: 460 GESTTTEVDKFVPASKN-FARVLAFNGAYNGPPSEIISFV-TPEGVPGT 506
             +  T  +  +P  ++    V A     +G  SE I         P +
Sbjct: 69  -NTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPSS 116

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 75.7 bits (186), Expect = 6e-15
 Identities = 49/297 (16%), Positives = 88/297 (29%), Gaps = 41/297 (13%)

Query: 129 TVEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKP----ISQAPPNPRRKVGPNR-- 181
               + ++ A  E+    C  +  +P   I W     P    I         +V      
Sbjct: 7   IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSES 66

Query: 182 ---------ITIENLRKSDTGNYGCNATNSLGYVYKD-----VYVNVLAHAPEITEAPKD 227
                    I+I N+  +D G Y C          +        ++V A       +   
Sbjct: 67  TKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPA 126

Query: 228 EYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYTILETGD---------LKITD 276
                  TV  TC   G +P+   + W  N  EL+  +  +   G+          K+  
Sbjct: 127 ARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVL 186

Query: 277 VAFADSGEYTCFARNKLGTA---QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS 333
                  +  C   +        +G+ +L+       T +     V A       C    
Sbjct: 187 TREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRK 246

Query: 334 DPSLKLSIVWLRGSEPIDFESEPRFVQSND--YS----LTVTKSSELDSGQYTCRAQ 384
               +L + WL        E+     ++ D  Y+    L V  S+  D  + TC+ +
Sbjct: 247 FYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVE 303

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 33/209 (15%), Positives = 57/209 (27%), Gaps = 20/209 (9%)

Query: 32  APKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTI-WSKDGVPI-----NPSDRISQGN 84
            P    V+     A     V   C   G +P   T+ W K+G  +     N        +
Sbjct: 116 KPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVS 175

Query: 85  YGKS--LIIKHVEFSDQGSYTCEVSN--GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEE 140
           Y       +            CEV++    G+    + +LS       T+E        E
Sbjct: 176 YSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAE 235

Query: 141 ETVTFECKASGL-PEP-EIHWVHNGKPISQAPPNPRRKVGPN------RITIENLRKSDT 192
             V   C+     P+  ++ W+ NG        +   +           + +      D 
Sbjct: 236 NQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDD 295

Query: 193 GNYGCNATN-SLGYVYKDVYVNVLAHAPE 220
               C   +     V K   + V      
Sbjct: 296 VKLTCQVEHDGQPAVSKSHDLKVSTRHHH 324

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 69.7 bits (171), Expect = 8e-15
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL 556
           TP   P          +  +   LKW  +     N  + G+ I Y+              
Sbjct: 3   TPITGP---HIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRD- 58

Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
             + + +     +  L+P T Y I +  + + G+   S
Sbjct: 59  --VVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFS 94

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 1/100 (1%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
            P+  P      + +   + ++ W  +   +     +G+ +          S  +  V +
Sbjct: 3   TPITGPHIAY-TEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE 61

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
           G      +    P +    ++  FN       S ++   T
Sbjct: 62  GSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 17/140 (12%), Positives = 42/140 (30%), Gaps = 42/140 (30%)

Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNT-GEAWNQDDVLDW 658
            P   P        +   +++ WT +P   +N P   + I++R  ++  ++  + DV++ 
Sbjct: 3   TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62

Query: 659 RQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR 718
            +   ++ +      Y+I                                         +
Sbjct: 63  SKQWHMIGHLQPETSYDI-----------------------------------------K 81

Query: 719 VLAFNGAYNGPPSEIISFVT 738
           +  FN       S ++   T
Sbjct: 82  MQCFNEGGESEFSNVMICET 101

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 73.2 bits (179), Expect = 9e-15
 Identities = 41/221 (18%), Positives = 70/221 (31%), Gaps = 46/221 (20%)

Query: 124 AAPYFTVE--PEFINAAEEETVTFECKAS---GLPEPEIHWVHNGK-------------P 165
           A   F+V      I A   E     C           E+ WV +                
Sbjct: 1   ADLQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVE 60

Query: 166 ISQAPPNPRR--------KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH 217
             Q+ P   R          G   + I N+  SD+G Y C   +   Y    V + V A 
Sbjct: 61  DRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAAL 120

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKEL-----------TGGRYT 265
             ++    K         + L CR  G  P+P++ W +N+ E              G Y 
Sbjct: 121 GSDLHVDVKGY---KDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYA 177

Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           +     + +     +     +C  R+ L   + + S+++ +
Sbjct: 178 V--AASVIMRG---SSGEGVSCTIRSSLLGLEKTASISIAD 213

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 70.5 bits (172), Expect = 8e-14
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 76  PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFI 135
             D I+ G    +L I +V  SD G Y C   +G    K+    + +  A   +     +
Sbjct: 74  LRDGITAGKA--ALRIHNVTASDSGKYLCYFQDGDFYEKAL---VELKVAALGSDLHVDV 128

Query: 136 NAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE---NLRKSD 191
              ++  +  EC+++G  P+P+I W +N          P    G     +     +R S 
Sbjct: 129 KGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSS 188

Query: 192 TGNYGCNATNSLG 204
                C   +SL 
Sbjct: 189 GEGVSCTIRSSLL 201

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 69.7 bits (170), Expect = 2e-13
 Identities = 37/216 (17%), Positives = 65/216 (30%), Gaps = 34/216 (15%)

Query: 223 EAPKDEYTVD-GKTVVLTCRV---FGAPKPEVNWIH------------------NQKELT 260
             P        G+   L C +     A   E+ W+                    Q    
Sbjct: 8   LGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPY 67

Query: 261 GGRYTILETG------DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP 314
            GR +IL  G       L+I +V  +DSG+Y C+ ++  G       + +K     +D  
Sbjct: 68  RGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGSDLH 125

Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL 374
            D +          C +      +  I W           E   V        V  S  +
Sbjct: 126 VDVKGYKDGGIHLECRSTGW-YPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIM 184

Query: 375 ---DSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
                   +C  ++ L  +E  A++++  P    + 
Sbjct: 185 RGSSGEGVSCTIRSSLLGLEKTASISIADPFFRSAQ 220

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 28/131 (21%)

Query: 298 GSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLK-LSIVWLRGSEP------- 349
                +V                 G+ A   C+     S + + + W+  S         
Sbjct: 1   ADLQFSV------LGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 54

Query: 350 ----IDFESEPRF----------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQAT 395
               ++      +          + +   +L +   +  DSG+Y C  Q    + +A   
Sbjct: 55  DGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVE 114

Query: 396 LTVQVPLEAPS 406
           L V        
Sbjct: 115 LKVAALGSDLH 125

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 73.0 bits (178), Expect = 9e-15
 Identities = 39/206 (18%), Positives = 57/206 (27%), Gaps = 23/206 (11%)

Query: 219 PEITEAPKDEYTVD-GKTVVLTCRVFGA-PKPEVNWIHNQKELTGGRYTILETGDLKITD 276
           P   E P+    V  G +  LTCR+  A     V W      L G   +      L + +
Sbjct: 7   PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL-GAVQSDTGRSVLTVRN 65

Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP- 335
            + + +G   C       T Q +  L V    +         +  G      C A     
Sbjct: 66  ASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQ-LTVSPAALVPGD-PEVACTAHKVTP 123

Query: 336 --SLKLSIVWLRGSEPI---------DFESEPRFVQSNDYSLTVT-----KSSELDSGQ- 378
                LS   L G + +           E E       D    VT               
Sbjct: 124 VDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPA 183

Query: 379 YTCRAQTELDFIEAQATLTVQVPLEA 404
             C+A   L  +E      + V +E 
Sbjct: 184 LYCQATMRLPGLELSHRQAIPVLIEG 209

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 58.4 bits (140), Expect = 8e-10
 Identities = 29/217 (13%), Positives = 53/217 (24%), Gaps = 30/217 (13%)

Query: 128 FTVEPE--FINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI 184
             VEP    +  A   +    C+ +       + W      +     +     G + +T+
Sbjct: 8   LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT----GRSVLTV 63

Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG 244
            N   S  G   C  +         V + V A   ++T +P     +      + C    
Sbjct: 64  RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPA---ALVPGDPEVACTAHK 120

Query: 245 APKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
               + N +             L  G  ++                 +           V
Sbjct: 121 VTPVDPNAL----------SFSLLVGGQELEGAQALGPEVQEEEEEPQGD---EDVLFRV 167

Query: 305 KEHTHITDQPEDYEVEAGQSATFRCNAVSD-PSLKLS 340
            E   +                  C A    P L+LS
Sbjct: 168 TERWRLPPLGTP------VPPALYCQATMRLPGLELS 198

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 47.6 bits (112), Expect = 4e-06
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 9/112 (8%)

Query: 51  VELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG 109
            +L C            W      +     +        L +++   S  G+  C  S G
Sbjct: 25  RQLTCRLACADRGASVQWRGLDTSLG---AVQSDTGRSVLTVRNASLSAAGTRVCVGSCG 81

Query: 110 VGEAKSYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
               +  ++ L V A P   TV P  +           C A  +   + + +
Sbjct: 82  GRTFQH-TVQLLVYAFPNQLTVSPAAL---VPGDPEVACTAHKVTPVDPNAL 129

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 72.0 bits (176), Expect = 2e-14
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNW--IHNQKELTGGRYTILETGDLKITDVAFADS 282
           P+  +   G ++ L C                 +     G    L     ++ D+     
Sbjct: 9   PRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRG----LRWLARQLVDIR-EPE 63

Query: 283 GEYTCFARNKLGTAQGSGSLTVK---EHTHITDQPEDYEVEAGQSATFRCNAV-SDPSLK 338
            +  CF R    T Q  G +      +   +   P       G++ T  C    + P   
Sbjct: 64  TQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPP--WQPVGENFTLSCRVPGAGPRAS 121

Query: 339 LSIVWLRGSEPI---DFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL 387
           L++  LRG++ +    F  EP   +    + TV    E     ++CRA+ +L
Sbjct: 122 LTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDL 173

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 21/176 (11%), Positives = 45/176 (25%), Gaps = 19/176 (10%)

Query: 130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
           ++P         ++   C  +  P PE   +      +      R         + ++R 
Sbjct: 7   LQPRVAFVERGGSLWLNCSTNC-PRPERGGLETSLRRNGTQRGLRWLA----RQLVDIR- 60

Query: 190 SDTGNYGCNATNSLGYVYKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFG--- 244
                  C    +   +     +         E+   P   +   G+   L+CRV G   
Sbjct: 61  EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELM--PLPPWQPVGENFTLSCRVPGAGP 118

Query: 245 APKPEVNWIHNQKELTGGRY------TILETGDLKITDVAFADSGEYTCFARNKLG 294
                +  +   +EL    +               +          ++C A   L 
Sbjct: 119 RASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 72.0 bits (176), Expect = 2e-14
 Identities = 29/189 (15%), Positives = 63/189 (33%), Gaps = 29/189 (15%)

Query: 421 VSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 480
           + WN   P     H   Y ++ W  K+  G  +E  +  G   +  +    P      ++
Sbjct: 20  IQWNAPQP----SHISKYILR-WRPKNSVGRWKEATIP-GHLNSYTIKGLKPGVVYEGQL 73

Query: 481 LAFNGAYNGPPSEIISFVTPEGVPGTVQ---------------SLEAIPLGSSAFYLKWV 525
           ++     +   +      T    P T                 S     + +S+F + W 
Sbjct: 74  ISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSW- 132

Query: 526 KPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY 585
                +  + G++++Y+  +        E        T TS  +  L P  KY +++   
Sbjct: 133 --VSASDTVSGFRVEYELSEEGD-----EPQYLDLPSTATSVNIPDLLPGRKYIVNVYQI 185

Query: 586 TKAGDGAES 594
           ++ G+ +  
Sbjct: 186 SEDGEQSLI 194

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 58.5 bits (141), Expect = 6e-10
 Identities = 22/191 (11%), Positives = 54/191 (28%), Gaps = 32/191 (16%)

Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
             +   P   ++  ++W  P+     +  Y ++++                       S 
Sbjct: 6   VFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNSVG-----RWKEATIPGHLNSY 58

Query: 568 KLAGLEPSTKYRIHLAGYTKAGDGAESKYLF-------------------YVPFKNPDNV 608
            + GL+P   Y   L    + G    +++ F                           + 
Sbjct: 59  TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118

Query: 609 EGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQ 668
                T ++ V+SW +            +R+ +     G+   Q   L    + + + + 
Sbjct: 119 SVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGD-EPQYLDLPSTATSVNIPDL 172

Query: 669 PTFQPYEIKVV 679
              + Y + V 
Sbjct: 173 LPGRKYIVNVY 183

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 11/141 (7%)

Query: 363 DYSLTVTKSSELDSGQYT--CRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKK-- 418
            Y   +    +    + T      T         T+T +    +P   T   V +     
Sbjct: 68  VYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASS 127

Query: 419 AVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA 478
            VVSW   S         G++V  +   +     + L +    +T+  +   +P  K   
Sbjct: 128 FVVSWVSAS-----DTVSGFRV-EYELSEEGDEPQYLDLP-STATSVNIPDLLPGRKYIV 180

Query: 479 RVLAFNGAYNGPPSEIISFVT 499
            V   +           S  T
Sbjct: 181 NVYQISEDGEQSLILSTSQTT 201

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 71.9 bits (176), Expect = 2e-14
 Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 26/198 (13%)

Query: 135 INAAEEETVTFECK----ASGLPEPEIHWVHNGKPI--------SQAPPNPRRKVGPNR- 181
           +    +E  T  C        L +  I+W    K +        +  P    R +     
Sbjct: 4   VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63

Query: 182 ---ITIENLRKSDTGNYGCNATNSLGYVYKDVY---VNVLAHAPEITEAPKDEYTVDGKT 235
              I I  LR SD G Y C         +K  +   V +   A   T +  D        
Sbjct: 64  NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNI 123

Query: 236 VVLTCRVFGA-PKPEVNWIHNQKELTGGRYTILETGDLKITDVA------FADSGEYTCF 288
             + C   G  P+P ++W+ N +EL     T+ +  + ++  V+         +  + C 
Sbjct: 124 RRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCL 183

Query: 289 ARNKLGTAQGSGSLTVKE 306
            +        + +    +
Sbjct: 184 IKYGHLRVNQTFNWNTAK 201

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 68.1 bits (166), Expect = 4e-13
 Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 28/186 (15%)

Query: 44  VALRNKKVELFCIFGGTPLPQT----IWSKDGVPI---------------NPSDRISQGN 84
                +   L C    +          W K+   +               N +      N
Sbjct: 5   TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64

Query: 85  YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL---AAPYFTVEPEFINAAEEE 141
              S++I  +  SD+G+Y C V     +A        V     A + T            
Sbjct: 65  L--SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122

Query: 142 TVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE---NLRKSDTGNYGC 197
                C  SG  PEP + W+ NG+ ++       +        +    +   +   ++ C
Sbjct: 123 IRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMC 182

Query: 198 NATNSL 203
                 
Sbjct: 183 LIKYGH 188

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 23/195 (11%), Positives = 50/195 (25%), Gaps = 29/195 (14%)

Query: 233 GKTVVLTCR----VFGAPKPEVNWIHNQKELTG-------------GRYTILETGD--LK 273
            +   L+C     V    +  + W   +K +                R     T +  + 
Sbjct: 9   KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIV 68

Query: 274 ITDVAFADSGEYTCFARNKLGT---AQGSGSLTVKEHTHITD-QPEDYEVEAGQSATFRC 329
           I  +  +D G Y C            +    +T+            D+E+         C
Sbjct: 69  ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIIC 128

Query: 330 NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL---DSGQYTCRAQTE 386
           +  S    +  + WL   E ++  +             V+   +     +  + C  +  
Sbjct: 129 ST-SGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYG 187

Query: 387 LDFIEAQATLTVQVP 401
              +    T      
Sbjct: 188 H--LRVNQTFNWNTA 200

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 17/106 (16%)

Query: 318 EVEAGQSATFRC--NAVSDPSLKLSIVWLRGSEPI------------DFESEPRFVQSND 363
             E  + AT  C  N   +   +  I W +  + +            ++++   F  +N+
Sbjct: 5   TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64

Query: 364 YSLTVTKSSELDSGQYTCRAQTELD---FIEAQATLTVQVPLEAPS 406
            S+ +      D G Y C            E  A +T+ V  + P+
Sbjct: 65  LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPT 110

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 68.6 bits (167), Expect = 4e-14
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 14/103 (13%)

Query: 223 EAPKDEYTVDGKTVVLTCRVFGAPKPEVNW--------------IHNQKELTGGRYTILE 268
                     G+ +VL C         +++              ++   +   G      
Sbjct: 13  SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72

Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT 311
              L I  V  +D G YTC A + L T + S  + V E   + 
Sbjct: 73  LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVA 115

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 68.2 bits (166), Expect = 6e-14
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 132 PEFINAAEEETVTFECKASGLPEP--EIHWVHNGKPISQA---------PPNPRRKVGPN 180
              I  +  E +   C A        + +W +                       K   +
Sbjct: 15  SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74

Query: 181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEIT 222
            +TI+ + +SD G Y C A++ L       +V V    P + 
Sbjct: 75  TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK-PFVA 115

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 60.5 bits (146), Expect = 3e-11
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 307 HTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPR--------- 357
           +  +       E+  G+     C A ++ ++ +   W   S     +             
Sbjct: 8   YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67

Query: 358 FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            ++    +LT+   +  D G YTC A + L   +    + V   
Sbjct: 68  EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 54.0 bits (129), Expect = 5e-09
 Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 13/100 (13%)

Query: 45  ALRNKKVELFCIFGGTPLP--QTIWSKDGVPINPSDRIS----------QGNYGKSLIIK 92
               +K+ L C             W            ++             +  +L I 
Sbjct: 20  LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79

Query: 93  HVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
            V  SDQG YTC  S+G+   K+ S  + V   P+     
Sbjct: 80  GVTRSDQGLYTCAASSGLMTKKN-STFVRVHEKPFVAFGS 118

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 67.4 bits (165), Expect = 5e-14
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 12/96 (12%)

Query: 218 APEITEAPKDEYTV---DGKTVVLTCRVFGAPKPEVNWIHNQKELT-GGRYTILETGD-- 271
            P    +P+D+ ++     + VVLTC +         W  + +++       +   G   
Sbjct: 7   GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKH 65

Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            L + +    DSGE+ C              +TV++
Sbjct: 66  RLILPEAKVQDSGEFECRT----EGVSAFFGVTVQD 97

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 13/98 (13%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YSLTVT 369
                     +     C  +S         W +  + +  E     V   D   + L + 
Sbjct: 16  DKVSLTFTTSERVVLTCE-LSRV--DFPATWYKDGQKV--EESELLVVKMDGRKHRLILP 70

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
           ++   DSG++ CR +       A   +TVQ P   PS+
Sbjct: 71  EAKVQDSGEFECRTEGV----SAFFGVTVQDP-SGPSS 103

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 121 SVLAAPYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV 177
           S  + P   + P+    +     E V   C+ S   +    W  +G+ +     +    V
Sbjct: 3   SGSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKV---EESELLVV 58

Query: 178 ----GPNRITIENLRKSDTGNYGCNATNS 202
                 +R+ +   +  D+G + C     
Sbjct: 59  KMDGRKHRLILPEAKVQDSGEFECRTEGV 87

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 45  ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSY 102
              +++V L C           W KDG  +  S+   +        LI+   +  D G +
Sbjct: 22  FTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEF 80

Query: 103 TCEVSNGVGEAK 114
            C          
Sbjct: 81  ECRTEGVSAFFG 92

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 69.8 bits (170), Expect = 7e-14
 Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 9/184 (4%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
           PK        ++ + C      +PEV  +              +           +    
Sbjct: 9   PKKLAVEPKGSLEVNCST-TCNQPEVGGLETSL---NKILLDEQAQWKHYLVSNISHDTV 64

Query: 285 YTCFARNKLGTAQGSGSLTV-KEHTHITDQPEDYEVEAGQSATFRCNAVSD-PSLKLSIV 342
             C           + +++V +    +    +   V  G+S T  C   +  P   L++ 
Sbjct: 65  LQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124

Query: 343 WLRGSEPID---FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
             RG+E +    F       Q    +   T   E     ++C A  +L            
Sbjct: 125 LFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS 184

Query: 400 VPLE 403
            P  
Sbjct: 185 APKM 188

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 55.5 bits (133), Expect = 6e-09
 Identities = 23/177 (12%), Positives = 47/177 (26%), Gaps = 22/177 (12%)

Query: 130 VEPEFINAAEEETVTFECKASGLPEPE---IHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
           V P+ +    + ++   C  +   +PE   +    N   + +                  
Sbjct: 7   VRPKKLAVEPKGSLEVNCSTTC-NQPEVGGLETSLNKILLDE---------QAQWKHYLV 56

Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG-- 244
              S      C+ T S      +  V+V     ++    +      GK+  + CRV    
Sbjct: 57  SNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVE 116

Query: 245 -APKPEVNWIHNQKELTGGRYTILETGDLKITDVAF-----ADSG-EYTCFARNKLG 294
                 +      + L    +        + T          D    ++C A   L 
Sbjct: 117 PLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM 173

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 73.8 bits (180), Expect = 7e-14
 Identities = 41/270 (15%), Positives = 75/270 (27%), Gaps = 19/270 (7%)

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSE 373
           P+D  V AG + T  C + +          LR    +              ++ +     
Sbjct: 210 PQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLY---------GQTVAIHILNIPV 260

Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG 433
            ++        T+ D       +    P + P   +     D K+ + SWNP     L G
Sbjct: 261 SENSGTNIIFITDDDV--YGTVVFAGYPPDVPQKLSCE-THDLKEIICSWNPGRITGLVG 317

Query: 434 HFR-GYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPS 492
                Y +            R   +   E+    V        +   +   N    G   
Sbjct: 318 PRNTEYTLFESISGKSAVFHRIEGLT-NETYRLGVQMHPGQEIHNFTLTGRNPL--GQAQ 374

Query: 493 EIISFVTPEGVP-GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGP 551
             +     E V      SL+   + S+     W  P     + +  +I+       K   
Sbjct: 375 SAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKK--E 432

Query: 552 LLERLPYISDPTTTSAKLAGLEPSTKYRIH 581
           +       ++ +T    +  L P T Y   
Sbjct: 433 VRNATIRGAEDSTYHVAVDKLNPYTAYTFR 462

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 46.5 bits (109), Expect = 3e-05
 Identities = 21/187 (11%), Positives = 44/187 (23%), Gaps = 6/187 (3%)

Query: 496 SFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 555
           + V     P   Q L             W  P +  G++     +Y   +       +  
Sbjct: 279 TVVFAGYPPDVPQKLSCETHDLKEIICSW-NPGRITGLVGPRNTEYTLFESISGKSAVFH 337

Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY----VPFKNPDNVEGR 611
                   T    +        +   L G    G  A+S  +      V   +P +++ +
Sbjct: 338 RIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQ-AQSAVVINVTERVAPHDPTSLKVK 396

Query: 612 GSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTF 671
                 +  SW             +  I                 +     + +     +
Sbjct: 397 DINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPY 456

Query: 672 QPYEIKV 678
             Y  +V
Sbjct: 457 TAYTFRV 463

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 41/289 (14%), Positives = 80/289 (27%), Gaps = 24/289 (8%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGE 284
           P+D+  + G  + + C +           +  + L       +    L I     + +  
Sbjct: 210 PQDKVVLAGSNMTICC-MSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNI 268

Query: 285 YTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRC--NAVSDPSLKLS-- 340
                 +  GT   +G        +  D P+    E        C  N      L     
Sbjct: 269 IFITDDDVYGTVVFAG--------YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRN 320

Query: 341 ---IVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL--DFIEAQAT 395
               ++   S           + +  Y L V      +   +T   +  L          
Sbjct: 321 TEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVIN 380

Query: 396 LTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL 455
           +T +V    P++   ++ I++     SW    P +        +++       +      
Sbjct: 381 VTERVAPHDPTSLK-VKDINSTVVTFSWYL--PGNFTKINLLCQIEICKANSKKEVRNAT 437

Query: 456 IVNKGESTTT-EVDKFVPASKNFARVLAF--NGAYNGPPSEIISFVTPE 501
           I    +ST    VDK  P +    RV             S+    +T E
Sbjct: 438 IRGAEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSRWSDEKRHLTTE 486

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 67.5 bits (165), Expect = 8e-14
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 499 TPEGVPGTV-QSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 555
           +    P           +  +   LKW  +     N  + G+ I Y+           + 
Sbjct: 3   SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDS---DY 59

Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
              + +       ++ L+P T Y I +  + + G+   S
Sbjct: 60  KKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFS 98

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 63.7 bits (155), Expect = 1e-12
 Identities = 11/106 (10%), Positives = 30/106 (28%), Gaps = 1/106 (0%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
             P+  P        ++    ++ W  +   +      G+ +          S  +  + 
Sbjct: 6   SGPVAGPYITF-TDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMV 64

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
           +G+     +    P +    ++  FN       S ++   T     
Sbjct: 65  EGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSG 110

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 16/141 (11%), Positives = 36/141 (25%), Gaps = 40/141 (28%)

Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
            P   P            +++ W  +P   +N P   + I++R  ++             
Sbjct: 7   GPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDND---------- 56

Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 719
                         Y+  +V                  +G+     +    P +    ++
Sbjct: 57  ------------SDYKKDMV------------------EGDRYWHSISHLQPETSYDIKM 86

Query: 720 LAFNGAYNGPPSEIISFVTPE 740
             FN       S ++   T  
Sbjct: 87  QCFNEGGESEFSNVMICETKA 107

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
           +    PG   ++       +   L+W  P++  G L+GY+++Y      +   +      
Sbjct: 3   SGSSGPGRP-TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTI------ 55

Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNP 605
                     + GL   T Y   LA   +AG G E +     P    
Sbjct: 56  DFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDLS 102

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 9/112 (8%)

Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIR 453
            +     P   P+   +I       A++ W+P  P+ L G   GY++Q +   D      
Sbjct: 1   GSSGSSGP-GRPTM--MISTTAMNTALLQWHP--PKELPGELLGYRLQ-YCRADEARPNT 54

Query: 454 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
             I    +     V      +    R+ A N A  G   E     TPE + G
Sbjct: 55  --IDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFE-KEIRTPEDLSG 103

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 66.9 bits (163), Expect = 2e-13
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 18/115 (15%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF------ESEPRF----V 359
           +T+  E   VE GQ+ T +C      +  L   WL  S    F          ++     
Sbjct: 4   LTNHTETITVEEGQTLTLKCVTSLRKNSSLQ--WLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP-----LEAPSNFT 409
            +N  S+TV   +  D G Y C   ++      +  + V           PS++ 
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGEFCRYPSHWR 115

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 14/110 (12%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI---------HNQKELTGGRYTILE- 268
             +T   +     +G+T+ L C         + W+         +    L   +Y +L  
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 269 ---TGDLKITDVAFADSGEYTCFA-RNKLGTAQGSGSLTVKEHTHITDQP 314
                 + + +V   D G Y C    + + T +    +           P
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYP 111

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 56.5 bits (136), Expect = 8e-10
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 12/112 (10%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI-----SQAPPNPRRKVGPN 180
              T   E I   E +T+T +C  S      + W+                N + ++  +
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 181 -----RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH-APEITEAPK 226
                 IT+ N+   D G Y C    S     K+V V VLA    E    P 
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEFCRYPS 112

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 13/87 (14%)

Query: 51  VELFCIFGGTPLPQTIWSK--------DGVPINPSDRISQGNYGK---SLIIKHVEFSDQ 99
           + L C+          W          +  P+  + +    ++     S+ + +V   D+
Sbjct: 19  LTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDE 78

Query: 100 GSYTCEVSNGVGEAKSYSIDLSVLAAP 126
           G Y C   +      +  + + VLA  
Sbjct: 79  GVYKCLHYS--DSVSTKEVKVIVLATM 103

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 69.5 bits (169), Expect = 2e-13
 Identities = 33/222 (14%), Positives = 59/222 (26%), Gaps = 48/222 (21%)

Query: 132 PEFINAAEEETVTFECKASGLPE---------------PEIHWVHNGKPISQAPPNPRRK 176
           P  +     ++V  +C  +G  +               P +          Q   +  R 
Sbjct: 7   PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66

Query: 177 VGPN-------RITIENLRKSDTGNYGCNA-TNSLGYVYKDVYVNVLA--HAPEIT-EAP 225
             P        R+ +   +  D  +Y C     + G       +NV A   A E++    
Sbjct: 67  RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKG 126

Query: 226 KDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKELT-------------------GGRYT 265
                 D    + TC      P P++ W  N + L                     G  +
Sbjct: 127 TLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLS 186

Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
           +  T  L +          + C A   L   +     +   H
Sbjct: 187 LTST--LYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFH 226

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 68.3 bits (166), Expect = 5e-13
 Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 42/201 (20%)

Query: 45  ALRNKKVELFCIF----------------GGTPLPQTIWSKDGVPINPSDRISQG----- 83
            +R K V L C                   G           G  +  +   ++G     
Sbjct: 12  VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPY 71

Query: 84  --NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTV----EPEFINA 137
             +    L++   +  D+  Y C V  G       +  L+V A P  T     +      
Sbjct: 72  QLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVM 131

Query: 138 AEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNR--------------I 182
            +       C +  G P P+I W  NG+ +             +R              +
Sbjct: 132 EDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTL 191

Query: 183 TIENLRKSDTGNYGCNATNSL 203
            +   +     ++ C A  SL
Sbjct: 192 YLRLRKDDRDASFHCAAHYSL 212

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 65.6 bits (159), Expect = 4e-12
 Identities = 37/216 (17%), Positives = 59/216 (27%), Gaps = 47/216 (21%)

Query: 233 GKTVVLTCRVFGAPKP-EVNWIHNQKELT------------------------GGRYTIL 267
           GK+V+L C   G      + W    +                              Y + 
Sbjct: 15  GKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLD 74

Query: 268 ETGDLKITDVAFADSGEYTCFAR-NKLGTAQGSGSLTVK---EHTHITDQPEDYEV-EAG 322
             G L + +    D  +Y C  R    GTA+ +  L V    E T ++       V E  
Sbjct: 75  SQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDS 134

Query: 323 QSATFRCNAV-SDPSLKLSIVWLRGSEPIDF----------ESEPRFVQSNDYS----LT 367
                 CN+   +P+    I W R  + ++            S      S   S    L 
Sbjct: 135 AQEIATCNSRNGNPA--PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLY 192

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLE 403
           +    +     + C A   L         +    L 
Sbjct: 193 LRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLT 228

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 27/181 (14%), Positives = 45/181 (24%), Gaps = 32/181 (17%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLR---------------------GSEPID 351
            P   EV  G+S    C           + W                        +    
Sbjct: 6   VPPLVEVMRGKSVILDCTPTGTHDH-YMLEWFLTDRSGARPRLASAEMQGSELQVTMHDT 64

Query: 352 FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI-EAQATLTVQVPLEAPSNFTL 410
               P +   +   L + ++   D   Y C  +       EA A L V    EA      
Sbjct: 65  RGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEAT----- 119

Query: 411 IQVIDAKKAVVSWNPVSPQSLRGHFRGYK---VQTWTEKDGEGSIRELIVNKGESTTTEV 467
            +V   K  +      + +    + R        TW        +   +  +G  T+  V
Sbjct: 120 -EVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTV 178

Query: 468 D 468
            
Sbjct: 179 R 179

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 43  EVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRISQGNYGKS------------- 88
            V   + +    C    G P P+  W ++G  +     ++   Y  S             
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188

Query: 89  --LIIKHVEFSDQGSYTCEVSNGVGEAK-----SYSIDLSVL 123
             L ++  +     S+ C     + E +     S +  L++ 
Sbjct: 189 STLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 68.2 bits (166), Expect = 3e-13
 Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 11/172 (6%)

Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAF 279
           + + +P       G +V++TC         +     +  L      +             
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGI---ETPLPKKELLLPGNNRKVYELSNV 57

Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVK---EHTHITDQPEDYEVEAGQSATFRCNAVS-DP 335
            +  +  C++    G +     LTV    E   +   P    V  G+  T RC      P
Sbjct: 58  QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV--GKQLTLRCQVEGGAP 115

Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL 387
             +L++V LRG + +  + EP   +  + + TV    +    Q++CR + +L
Sbjct: 116 RAQLTVVLLRGEKEL--KREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDL 165

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 29/171 (16%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK 189
           V P  +      +V   C  S      +       P+ +         G NR   E    
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQPKLLGIET---PLPKKELLLP---GNNRKVYELSNV 57

Query: 190 SDTGNYGCNATNSLGYVYKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFG--- 244
            +     C +    G      ++ V       E+   P  +    GK + L C+V G   
Sbjct: 58  QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV--GKQLTLRCQVEGGAP 115

Query: 245 APKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSG-EYTCFARNKLG 294
             +  V  +  +KEL                 V     G +++C     L 
Sbjct: 116 RAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR 166

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 68.0 bits (165), Expect = 3e-13
 Identities = 34/195 (17%), Positives = 56/195 (28%), Gaps = 44/195 (22%)

Query: 223 EAPKDEYTVD--GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA 280
           +A   EY V   G +V LTC +       + W  N +EL       L   D    +    
Sbjct: 2   DAENIEYKVSISGTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVE---- 55

Query: 281 DSGEYTCFARN-----------KLGTAQGSGSLTVKEHTHITDQP--------------E 315
           DSG Y C+              ++G+A  +     K+     D                +
Sbjct: 56  DSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQ 115

Query: 316 DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELD 375
                   S    C           I WL+    I        + +   +  +  +++  
Sbjct: 116 VDGSRGDGSVLLTCGLTDKT-----IKWLKDGSII------SPLNATKNTWNLGNNAKDP 164

Query: 376 SGQYTCRAQTELDFI 390
            G Y C+   E    
Sbjct: 165 RGTYQCQGAKETSNP 179

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 63.7 bits (154), Expect = 9e-12
 Identities = 34/187 (18%), Positives = 52/187 (27%), Gaps = 43/187 (22%)

Query: 43  EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHV-EFSDQGS 101
           +V++    VEL C           W K+G  +          + K L+++   E  D G 
Sbjct: 9   KVSISGTSVELTCPL--DSDENLKWEKNGQEL-------PQKHDKHLVLQDFSEVEDSGY 59

Query: 102 YTCEVSNGVGEAKSY-------SIDLSVLAAPYFTVEPEFINAA---------------- 138
           Y C           Y       + D    AA     + +                     
Sbjct: 60  YVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGS 119

Query: 139 -EEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGC 197
             + +V   C  +      I W+ +G  IS   P    K   N   + N  K   G Y C
Sbjct: 120 RGDGSVLLTCGLTD---KTIKWLKDGSIIS---PLNATK---NTWNLGNNAKDPRGTYQC 170

Query: 198 NATNSLG 204
                  
Sbjct: 171 QGAKETS 177

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 60.7 bits (146), Expect = 9e-11
 Identities = 26/180 (14%), Positives = 51/180 (28%), Gaps = 41/180 (22%)

Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL-RKSDTGNYGCNA 199
            +V   C      +  + W  NG+ +   P    +      + +++     D+G Y C  
Sbjct: 15  TSVELTCPLD--SDENLKWEKNGQEL---PQKHDK-----HLVLQDFSEVEDSGYYVCYT 64

Query: 200 TNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVD------------------------GKT 235
             S    Y  +   V +      +A K +                              +
Sbjct: 65  PASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGS 124

Query: 236 VVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGT 295
           V+LTC   G     + W+ +   ++    T        + + A    G Y C    +   
Sbjct: 125 VLLTC---GLTDKTIKWLKDGSIISPLNAT---KNTWNLGNNAKDPRGTYQCQGAKETSN 178

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 14/123 (11%)

Query: 312 DQPEDYEVE-AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTK 370
            +  +Y+V  +G S    C   SD +    + W +  + +         Q +D  L +  
Sbjct: 3   AENIEYKVSISGTSVELTCPLDSDEN----LKWEKNGQELP--------QKHDKHLVLQD 50

Query: 371 SSEL-DSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQ 429
            SE+ DSG Y C                V    +A  +           A    +  +  
Sbjct: 51  FSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKA 110

Query: 430 SLR 432
              
Sbjct: 111 KNL 113

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 64.8 bits (158), Expect = 6e-13
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 10/98 (10%)

Query: 499 TPEGVPGTVQSLEAIPL--GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL 556
           +    P   ++L+              W  P   +G++  Y ++Y               
Sbjct: 3   SGSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQ---- 58

Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                  +   ++  L  +T Y + +A  T  G G  S
Sbjct: 59  ----RAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWS 92

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV 457
             P +AP N  L    +A+  +   W P  P    G  R Y V+ ++    +        
Sbjct: 6   SGP-DAPRNLQLSLPREAEGVIVGHWAP--PIHTHGLIREYIVE-YSRSGSK----MWAS 57

Query: 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
            +  S  TE+   +  +    RV A      G  S+  S  T +G  
Sbjct: 58  QRAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 64.5 bits (157), Expect = 9e-13
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 507 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS 566
           V+    + L  +   + W   ++    + GY++ Y+   G +     + L     PT  S
Sbjct: 19  VRLHNPVVLTPTTVQVTW-TVDRQPQFIQGYRVMYRQTSGLQATSSWQNLD-AKVPTERS 76

Query: 567 AKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF 598
           A L  L+    Y I +  Y     G +S+   
Sbjct: 77  AVLVNLKKGVTYEIKVRPYFNEFQGMDSESKT 108

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 12/117 (10%)

Query: 388 DFIEAQATLT-VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKV--QTWT 444
              + Q  L  V V L  P       V+      V+W            +GY+V  +  +
Sbjct: 6   SGRQVQKELGDVLVRLHNP------VVLTPTTVQVTWTVDRQPQFI---QGYRVMYRQTS 56

Query: 445 EKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
                 S + L        +  +           +V  +   + G  SE  +  T E
Sbjct: 57  GLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 66.0 bits (160), Expect = 3e-12
 Identities = 37/214 (17%), Positives = 68/214 (31%), Gaps = 41/214 (19%)

Query: 223 EAPKDEYTVDGKTVVLTCRV-------FGAPKPEVNWIHNQK------------------ 257
           +  K     +G  V++ C         + +P   V W  + +                  
Sbjct: 5   QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVK 64

Query: 258 ELTGGRYTIL-----ETGDLKITDVAFADSGEYTCFARN----KLGTAQGSGSLTVKEHT 308
             T GR+ +L     +   L I D    D+G Y          K    Q   +L V    
Sbjct: 65  PETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI 124

Query: 309 HITDQPEDYEVEAGQSATFRC--NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSL 366
              D      +E+G+     C      +    L+  W   +       +P   +S++  L
Sbjct: 125 EKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS---PLDPETTRSSE--L 179

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
           T+T   E      TC+ + +   +  + T+ + V
Sbjct: 180 TLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 58.7 bits (141), Expect = 6e-10
 Identities = 29/168 (17%), Positives = 41/168 (24%), Gaps = 17/168 (10%)

Query: 56  IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS 115
           +    P  +      G        + + N   SL I      D GSY   V  G     S
Sbjct: 54  VATNNPDRRVKPETQG-RFRLLGDVQKKNC--SLSIGDARMEDTGSYFFRVERGRDVKYS 110

Query: 116 Y---SIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS----GLPEPEIHWVHNGKPISQ 168
           Y    ++L V A                      C         P     W  N      
Sbjct: 111 YQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNAL---- 166

Query: 169 APPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY--KDVYVNV 214
             P        + +T+    +    N  C        V   + V +NV
Sbjct: 167 -SPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 61.3 bits (149), Expect = 8e-12
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
           +   VP     LE +    ++  + W         +  Y+I Y    G    P+ E   +
Sbjct: 6   SVSSVP---TKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGD--SPVQE---F 57

Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                 ++A ++GL+P   Y I +  Y     G E 
Sbjct: 58  TVPGYYSTATISGLKPGVDYTITVYAYDTFFPGYEP 93

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
           +       P+   ++         +SW+     S   + + Y++ T+ E  G+  ++E  
Sbjct: 3   SGSSVSSVPTKLEVVDA-TPTSLKISWDA--YYSSWQNVKYYRI-TYGETGGDSPVQEFT 58

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
           V  G  +T  +    P       V A++  + G        + 
Sbjct: 59  VP-GYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 65.1 bits (158), Expect = 2e-11
 Identities = 40/251 (15%), Positives = 81/251 (32%), Gaps = 27/251 (10%)

Query: 42  KEVALRNKKVELFC-IFGGTPLPQTI-WSKDGVPIN-----PSDRISQGNYGKS--LIIK 92
                    ++L C + G TP    I W +DG  ++      S             L + 
Sbjct: 18  DGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLS 77

Query: 93  HVEFSDQGSYTCEVS---NGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA 149
              +    +YTC+V+   +   ++     D +      +   P   +    ++ T  C  
Sbjct: 78  QKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLV 137

Query: 150 SGLPEPE----IHW-VHNGKPISQAPPNPRRKVGPN-----RITIENLRKSDTGNYGCNA 199
             L   +    + W   +GKP++ +     ++          + +      +   Y C  
Sbjct: 138 VDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRV 197

Query: 200 TNSLGYVYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIH 254
           T+              +    APE+      E+        L C +    P+   V W+H
Sbjct: 198 THPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLH 257

Query: 255 NQKELTGGRYT 265
           N+ +L   R++
Sbjct: 258 NEVQLPDARHS 268

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 24/214 (11%)

Query: 221 ITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYTILETGD------- 271
           I ++  D       T+ L C V G  P   ++ W+ + + +     T   T +       
Sbjct: 12  ILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQ 71

Query: 272 --LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT----HITDQPEDYEVEAGQSA 325
             L ++   +     YTC    +  T + S       +         +P  +++   +S 
Sbjct: 72  SELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSP 131

Query: 326 TFRCNAV--SDPSLKLSIVWLR-GSEPIDFESEPRFVQSNDYS-----LTVTKSSELDSG 377
           T  C  V  +     + + W R   +P++  +     Q N        L V     ++  
Sbjct: 132 TITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGE 191

Query: 378 QYTCRAQ-TELDFIEAQATLTVQVPLEAPSNFTL 410
            Y CR     L     ++T     P  AP  +  
Sbjct: 192 TYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAF 225

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 72/395 (18%), Positives = 120/395 (30%), Gaps = 46/395 (11%)

Query: 59  GTPLPQTIWSKDGVPINPSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVSNGVGEAKSY 116
           G      I+     P     R S    G S  L I  +E  D+  Y C   N    +  +
Sbjct: 40  GMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVF 99

Query: 117 SIDLSV------LAAPYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGKPISQ 168
                V       A P  T+ P      +    T  C  S   P    + W  +G P+  
Sbjct: 100 GTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKA 159

Query: 169 APPNPRRKVGPN-------RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HA 218
                +     N        +++   +     +Y C  T+    V K V     +     
Sbjct: 160 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKG 219

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT---ILETGD-- 271
           P +        +  G T  L C V    P+P  V+W  N   LT G +T   +L++    
Sbjct: 220 PSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW--NSGALTSGVHTFPAVLQSSGLY 277

Query: 272 -----LKITDVAFADSGEYTCFARNKLGT--AQGSGSLTVKEHTHITDQPEDYEVEAGQS 324
                + +   +   +  Y C   +K                   +        +   ++
Sbjct: 278 SLSSVVTVPSSSL-GTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRT 336

Query: 325 ATFRCNA--VSDPSLKLSIVWLR-GSEPIDFESEPRFVQSNDYS-----LTVTKSSELDS 376
               C    VS    ++   W   G +  + +++PR  Q N        LTV   + LD 
Sbjct: 337 PEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDG 396

Query: 377 GQYTCRAQ-TELDFIEAQATLTVQVPLEAPSNFTL 410
            +Y C+     L     +     +     P  +TL
Sbjct: 397 KEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL 431

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 68/387 (17%), Positives = 118/387 (30%), Gaps = 61/387 (15%)

Query: 48  NKKVELFC-IFGGTPLPQTI-WSKDGVPIN------PSDRISQGNYGKS--LIIKHVEFS 97
             K  L C I    P   T+ W  DG P+          + S   Y  S  L +   ++ 
Sbjct: 129 ANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWK 188

Query: 98  DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE-FINAAEEE-----TVTFECKASG 151
              SY+C+V++   E  +    ++       T  P  F  A   +     T    C    
Sbjct: 189 SHRSYSCQVTH---EGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD 245

Query: 152 L-PEP-EIHWVHNGKPISQAPPNPRRKVGPN---------RITIENLRKSDTGNYGCNAT 200
             P+P  + W  N   ++         +  +          +   +L  + T  Y CN  
Sbjct: 246 YFPQPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQT--YICNVN 300

Query: 201 NSLGYVYKDVYVNVLAHAPEITEAPK-DEYTVDGKTVVLTCRVFGAPKPE----VNWIHN 255
           +       D  V  L+        PK  +  +  +T  +TC V      +     NW  +
Sbjct: 301 HKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVD 360

Query: 256 QKELTGGRYTILE---------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
             ++   +    E            L +    + D  EY C   NK   A    +++  +
Sbjct: 361 GVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAK 420

Query: 307 HTHITDQ----PEDYEVEAGQSATFRCNAVSDPSLK-LSIVWLRGSEPIDFE--SEPRFV 359
                 Q    P   E       +  C  V       +++ W    +P +    + P   
Sbjct: 421 GQPREPQVYTLPPSREEMTKNQVSLTC-LVKGFYPSDIAVEWESNGQPENNYKTTPPVLD 479

Query: 360 QSNDYS----LTVTKSSELDSGQYTCR 382
               +     LTV KS       ++C 
Sbjct: 480 SDGSFFLYSKLTVDKSRWQQGNVFSCS 506

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 57/379 (15%), Positives = 108/379 (28%), Gaps = 69/379 (18%)

Query: 141 ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG----------PNRITIE----- 185
           + VT  C  +      ++W        Q P    + +           P R +       
Sbjct: 16  QRVTISCTGTSSGSITVNWYQ------QLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTS 69

Query: 186 ------NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPK------DEYTVDG 233
                  L   D  +Y C + NS    Y       +    +    P           +  
Sbjct: 70  ASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQA 129

Query: 234 KTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT---ILETGD-------LKITDVAFAD 281
               L C +    P    V W  +   +  G  T     ++ +       L +T   +  
Sbjct: 130 NKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKS 189

Query: 282 SGEYTCFARNKLGTAQGSGSLTV----KEHTHITDQPEDYEVEAGQSATFRCNAVSD--P 335
              Y+C   ++  T + + + T      +   +       +  +G +A   C  V D  P
Sbjct: 190 HRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGC-LVKDYFP 248

Query: 336 SLKLSIVWLRGSEPIDFESEPRFVQSND-YS----LTVTKSSELDSGQYTCR----AQTE 386
              +++ W  G+      + P  +QS+  YS    +TV  SS L +  Y C         
Sbjct: 249 Q-PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVP-SSSLGTQTYICNVNHKPSNT 306

Query: 387 LDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEK 446
                 +      V L  P     + +    +       VS +  +  F       W   
Sbjct: 307 KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKF------NWYVD 360

Query: 447 DGEGSIRELIVNKGESTTT 465
             +    +    + +  +T
Sbjct: 361 GVQVHNAKTKPREQQYNST 379

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 60.3 bits (146), Expect = 2e-11
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI------DFESEPRFV----QSN 362
             ++  V  G +A   C    + +  L   W   ++            + R        +
Sbjct: 12  LTQNVTVVEGGTAILTCRVDQNDNTSLQ--WSNPAQQTLYFDDKKALRDNRIELVRASWH 69

Query: 363 DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           + S++V+  S  D GQYTC   T      ++A LTV   
Sbjct: 70  ELSISVSDVSLSDEGQYTCSLFTM-PVKTSKAYLTVLGV 107

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 59.1 bits (143), Expect = 6e-11
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 217 HAPEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWI---------HNQKELTGGRYTI 266
              +         TV  G T +LTCRV       + W           ++K L   R  +
Sbjct: 4   KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63

Query: 267 LETGD----LKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
           +        + ++DV+ +D G+YTC     +        LTV
Sbjct: 64  VRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 121 SVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI-----SQAPPNPRR 175
            V  +       + +   E  T    C+        + W +  +        +A  + R 
Sbjct: 2   KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61

Query: 176 KVGPN-----RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
           ++         I++ ++  SD G Y C+   ++       Y+ VL 
Sbjct: 62  ELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLG 106

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 13/107 (12%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--------VPINPSDRISQ 82
              + Q+   +    +      L C           WS                 +RI  
Sbjct: 4   KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63

Query: 83  GNYGK---SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
                   S+ +  V  SD+G YTC +       K+    L+VL  P
Sbjct: 64  VRASWHELSISVSDVSLSDEGQYTCSLFT--MPVKTSKAYLTVLGVP 108

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 13/201 (6%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
           +  +P E P N + I V + KK    W+      L  +F      T   +       +  
Sbjct: 3   SSGLPPEKPKNLSCI-VNEGKKMRCEWDGGRETHLETNF------TLKSEWATHKFADCK 55

Query: 457 VNKGESTTTEVDK-FVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPL 515
             +   T+  VD   V        V A N         I      +  P    +L  I  
Sbjct: 56  AKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINS 115

Query: 516 GSSAFYLK--WVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE 573
              +  LK  W  P   + +++ Y I+Y++   +    +    P  +  T +S  +  L+
Sbjct: 116 EELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQI---PPEDTASTRSSFTVQDLK 172

Query: 574 PSTKYRIHLAGYTKAGDGAES 594
           P T+Y   +    + G G  S
Sbjct: 173 PFTEYVFRIRCMKEDGKGYWS 193

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 13/203 (6%)

Query: 312 DQPEDYEVEAGQSATFRC--NAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
           ++P++      +    RC  +   +  L+ +   L+        ++ +  +    S TV 
Sbjct: 9   EKPKNLSCIVNEGKKMRCEWDGGRETHLETNFT-LKSEWATHKFADCKAKRDTPTSCTVD 67

Query: 370 KS-SELDSGQYTCRAQTELDFIE---AQATLTVQVPLEAPSNFTLIQVIDAKKAV-VSWN 424
            S     + +    A+  L  +           +V    P N ++I   +    + ++W 
Sbjct: 68  YSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWT 127

Query: 425 PVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN 484
              P         Y +Q  T+     S           ++  V    P ++   R+    
Sbjct: 128 N--PSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMK 185

Query: 485 GAYNG---PPSEIISFVTPEGVP 504
               G     SE  S +T E  P
Sbjct: 186 EDGKGYWSDWSEEASGITYEDRP 208

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
           V      LE +    ++  + W  P   + V   Y+I Y    G    P+ E   +    
Sbjct: 4   VSSVPTKLEVVAATPTSLLISWDAPMSSSSVY-YYRITYGETGGN--SPVQE---FTVPY 57

Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
           ++++A ++GL P   Y I +  + +   G    
Sbjct: 58  SSSTATISGLSPGVDYTITVYAWGEDSAGYMFM 90

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 63.3 bits (153), Expect = 9e-11
 Identities = 40/282 (14%), Positives = 79/282 (28%), Gaps = 26/282 (9%)

Query: 379 YTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFR-G 437
           YT    T        ++   ++ +  P +F ++         + W P             
Sbjct: 12  YTFLISTTFG---CTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVE 68

Query: 438 YKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNG-----PPS 492
           Y+++        GS     +        +        +     L      NG       +
Sbjct: 69  YELKYRN----IGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWA 124

Query: 493 EIISFVTPEG-VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGP 551
           E   +++P+G     VQ ++ +          W KP     +   Y + Y          
Sbjct: 125 ETTYWISPQGIPETXVQDMDCVYYNWQYLLCSW-KPGIGVLLDTNYNLFYWYEGLDHA-- 181

Query: 552 LLERLPYISDPTTTSA---KLAGLEPSTKYRIHLAGYTKAGDGAESKYLF----YVPFKN 604
            L+ + YI                     + I + G ++      S + F     V    
Sbjct: 182 -LQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLP 240

Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNT 646
           P  +     +   + + W+ +P     A  F Y I  R  +T
Sbjct: 241 PVYLTFTRESSCEIKLKWS-IPLGPIPARCFDYEIEIREDDT 281

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 58.7 bits (141), Expect = 1e-10
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 16/100 (16%)

Query: 223 EAPKDEYTVDGKTVVLTCRVFGAP---KPEVNWI-------------HNQKELTGGRYTI 266
           + P       GK  V+  +V G     KP + W                  + +    + 
Sbjct: 17  KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASN 76

Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           + T +L I  V   D G Y    + K        ++ V+ 
Sbjct: 77  VYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 12/116 (10%)

Query: 298 GSGSLTVKEHTHI-TDQPEDYEVEAGQSATFRCNAVSDPSL-KLSIVWLRG--------- 346
            SGS   +E T +   +P+   VE G+ A             K +I W +G         
Sbjct: 2   SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS 61

Query: 347 SEPIDF-ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
                F ES           L + K    D G Y    + +         + V+ P
Sbjct: 62  GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 15/105 (14%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASG---LPEPEIHWVHNGKPISQAPPNPRR------- 175
             F  +P+ ++    +      K +G     +P I W   GK +     +  R       
Sbjct: 13  GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKW-FKGKWLELGSKSGARFSFKESH 71

Query: 176 ----KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
                V    + I  +   D G Y                ++V A
Sbjct: 72  NSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 16/118 (13%)

Query: 23  GISASQNRHAPKQQYVTRKKEVALRNKK-VELFCIFGGTPL---PQTIW---------SK 69
           G S S     P   ++ +   V++   K   +     G  L   P   W         SK
Sbjct: 1   GSSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSK 60

Query: 70  DGVPINPSDRISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAA 125
            G   +  +  +  +  Y   L I  V   D+G Y  EV        S   ++ V A 
Sbjct: 61  SGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTC-DSCGFNIDVEAP 117

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 42/290 (14%), Positives = 76/290 (26%), Gaps = 47/290 (16%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
               P+ +  P  +       VT  C                +           +     
Sbjct: 21  GQDKPFLSAWPSAV-VPRGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGRIFQE---S 75

Query: 182 ITIENLRKSDTGNYGCNATNSL-GYVYK------DVYVNVLAHAPEITEAPKDEYTVDGK 234
             +  +  +  GNY C  ++      +        + V      P +   P       G+
Sbjct: 76  FNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKS-GE 134

Query: 235 TVVLTCR------VF-----GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSG 283
            V+L C        F     G  K          ++  G        +  I  +  A +G
Sbjct: 135 RVILQCWSDIMFEHFFLHKEGISKD---PSRLVGQIHDGVSK----ANFSIGPMMLALAG 187

Query: 284 EYTCFARNKLGTAQGSGS-----LTVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDP 335
            Y C+        Q S       + V        ++ QP   +V+AG+S T  C++ S  
Sbjct: 188 TYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQP-GPKVQAGESVTLSCSSRSSY 246

Query: 336 SLKLSIVWLR--GSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
                    R  G+      +  +   +  +            G Y C  
Sbjct: 247 D---MYHLSREGGAHERRLPAVRK--VNRTFQADFPLGPATHGGTYRCFG 291

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 35/251 (13%), Positives = 66/251 (26%), Gaps = 28/251 (11%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
           G  V L C                +      +  +      ++ V  A +G YTC   + 
Sbjct: 38  GGHVTLRCHY-RHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHP 96

Query: 293 LGTAQGSGS-----LTVKEH---THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL 344
                 S       + V  +     +   P    V++G+    +C +             
Sbjct: 97  HSPTGWSAPSNPVVIMVTGNHRKPSLLAHP-GPLVKSGERVILQCWSDIMF---EHFFLH 152

Query: 345 RGSEPIDFESEPRFVQS--NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA-----TLT 397
           +     D       +    +  + ++       +G Y C         +  A      + 
Sbjct: 153 KEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIV 212

Query: 398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV 457
           V  P E PS             V +   V   +L    R         ++G    R L  
Sbjct: 213 VTGPYEKPS-----LSAQPGPKVQAGESV---TLSCSSRSSYDMYHLSREGGAHERRLPA 264

Query: 458 NKGESTTTEVD 468
            +  + T + D
Sbjct: 265 VRKVNRTFQAD 275

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 41/262 (15%), Positives = 74/262 (28%), Gaps = 30/262 (11%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN-- 108
           V L C          +  K+     P        + +S  +  V  +  G+YTC  S+  
Sbjct: 41  VTLRCH-YRHRFNNFMLYKEDRIHIPIFHGRI--FQESFNMSPVTTAHAGNYTCRGSHPH 97

Query: 109 --GVGEAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
                 A S  + + V      P     P  +     E V  +C  S +          G
Sbjct: 98  SPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQC-WSDIMFEHFFLHKEG 155

Query: 164 KPISQAPPNPRRKVGPNRI--TIENLRKSDTGNYGCNATNSLGYVYK-------DVYVNV 214
                +    +   G ++   +I  +  +  G Y C  + +             D+ V  
Sbjct: 156 ISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG 215

Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-----EVNWIHNQKELTGGRYTILET 269
               P ++  P  +    G++V L+C    +        E      +           + 
Sbjct: 216 PYEKPSLSAQPGPKVQA-GESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQA 274

Query: 270 GDLKITDVAFADSGEYTCFARN 291
            D  +        G Y CF   
Sbjct: 275 -DFPLGPA--THGGTYRCFGSF 293

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
           +    P   +  +     ++   + W  P      +  Y++++  V+G+           
Sbjct: 3   SGSSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQI-------- 54

Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                  S ++ GL P+T Y   +   +  G G  S
Sbjct: 55  CYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFS 90

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
           +     +       +    A  A V+W    P S       Y+++ W   +G   I    
Sbjct: 3   SGSSGPDQCKPPQ-VTCRSATCAQVNWEV--PLSNGTDVTEYRLE-WGGVEGSMQI---- 54

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
              G   + E+    PA+  + RV A +    GP SE+++ VTP    
Sbjct: 55  CYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 55.5 bits (134), Expect = 7e-10
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
           +   VP     LE +    ++  + W   +  +  +  Y+I Y    G            
Sbjct: 3   SVSSVP---TKLEVVAATPTSLLISW---DASSSSVSYYRITYGETGGNSPVQEFTV--- 53

Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
               ++++A ++GL P   Y I +  Y    D   S
Sbjct: 54  --PGSSSTATISGLSPGVDYTITVYAYYSYYDLYYS 87

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
               P+   ++        ++SW+  S          Y++ T+ E  G   ++E  V  G
Sbjct: 4   VSSVPTKLEVVAA-TPTSLLISWDASS-----SSVSYYRI-TYGETGGNSPVQEFTVP-G 55

Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
            S+T  +    P       V A+   Y+   S   S + 
Sbjct: 56  SSSTATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 23/160 (14%), Positives = 48/160 (30%), Gaps = 15/160 (9%)

Query: 233 GKTVVLTCRV-FGAPKPEVNWIHNQKELTGGRYTILETGD---LKITDVAFADSGEYTCF 288
             +V + C+    A   ++  I N      GR             I  +    +G Y C 
Sbjct: 23  DGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ 82

Query: 289 ARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
            R      + S +L +          ++       +  G++ +  C++   P  +     
Sbjct: 83  YRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLV-LMPGENISLTCSSAHIPFDR--FSL 139

Query: 344 LRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
            +  E    + +     +N    ++       SG Y C  
Sbjct: 140 AKEGELSLPQHQSGEHPAN---FSLGPVDLNVSGIYRCYG 176

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 9/144 (6%)

Query: 59  GTPLPQTIWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSNGVGE-AKSY 116
              L Q +  K+        R+   N      +I H++ +  G Y C+   G      S 
Sbjct: 35  EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSD 94

Query: 117 SIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP 173
           +++L V      P+ + +   +     E ++  C ++ +P         G+    + P  
Sbjct: 95  TLELVVTGLYGKPFLSADRGLV-LMPGENISLTCSSAHIPFDRFSLAKEGEL---SLPQH 150

Query: 174 RRKVGPNRITIENLRKSDTGNYGC 197
           +    P   ++  +  + +G Y C
Sbjct: 151 QSGEHPANFSLGPVDLNVSGIYRC 174

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 22/176 (12%), Positives = 49/176 (27%), Gaps = 7/176 (3%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
               P+ + +   +    + +V  +C+A       ++  + N                  
Sbjct: 6   DFPMPFISAKSSPV-IPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDP 64

Query: 181 RITIENLRKSDTGNYGCNATNSLGY----VYKDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
              I+++  +  G Y C               ++ V  L   P ++          G+ +
Sbjct: 65  EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMP-GENI 123

Query: 237 VLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
            LTC     P    +     +       +     +  +  V    SG Y C+    
Sbjct: 124 SLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN 179

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 6/110 (5%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSW--NPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
             P+  P       ++      ++W  N +         R Y V+  T        +   
Sbjct: 6   SGPMMPPVGVQ-ASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN 64

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT 506
                + +  V    P +     V+   G  +   S      T E    +
Sbjct: 65  AT---TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPS 111

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 11/102 (10%)

Query: 499 TPEGVPGTV-QSLEAIPLGSSAFYLKWVKPEQP----NGVLMGYKIKYQSVKGTKVGPLL 553
           +    P      ++A  L      + W     P          Y +++++          
Sbjct: 3   SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA------ 56

Query: 554 ERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
                 ++ TT S  + GL+P+T Y   +           S 
Sbjct: 57  NTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSM 98

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 11/119 (9%)

Query: 395 TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHF-------RGYKVQTWTEKD 447
           T   +  L           I A+  V++W+P S                GY+V   +   
Sbjct: 11  TKAFEALLSNIVKPV-ASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL-ISSTG 68

Query: 448 GEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT 506
            +G  + + V  GE T   ++   PA    A+V A   +  G PSE   F T    P  
Sbjct: 69  KDGKYKSVYV--GEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDI 125

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 15/117 (12%)

Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV---------LMGYK 538
           +   S        E +   +    A  + +    L W  P               L GY+
Sbjct: 2   SSGSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYE 61

Query: 539 IKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
           +   S           +   +     T+  L  L+P+  Y   +     +  G  S+
Sbjct: 62  VLISSTGKD------GKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSE 112

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 674 YEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 733
           YE+      +    +G  + + V  GE T   ++   PA    A+V A   +  G PSE 
Sbjct: 60  YEV----LISSTGKDGKYKSVYV--GEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA 113

Query: 734 ISFVTPEG 741
             F T   
Sbjct: 114 EIFTTLSC 121

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 54.0 bits (129), Expect = 3e-09
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 220 EITEAPKDEYTVD--GKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILETGDLKI 274
           E+    +  Y V   G TV+LTC     P  E+ W HN K + G    +    +   L +
Sbjct: 6   EMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSL 63

Query: 275 TDVA-FADSGEYTCFARNKLG 294
            + +    SG Y C+ R    
Sbjct: 64  KEFSELEQSGYYVCYPRGSKP 84

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 47.5 bits (112), Expect = 6e-07
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 314 PEDYEVE-AGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
              Y+V  +G +    C           I+W    + I  + + + + S++  L++ + S
Sbjct: 12  QTPYKVSISGTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFS 67

Query: 373 EL-DSGQYTCRAQ 384
           EL  SG Y C  +
Sbjct: 68  ELEQSGYYVCYPR 80

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK-SDTGNYGCNAT 200
           TV   C     P  EI W HN K I     +       + ++++   +   +G Y C   
Sbjct: 23  TVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 80

Query: 201 NSLG-----YVYKDVYV 212
            S       Y+Y    V
Sbjct: 81  GSKPEDANFYLYLRARV 97

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 43  EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHV-EFSDQG 100
           +V++    V L C     P  + +W  +   I    D  + G+    L +K   E    G
Sbjct: 16  KVSISGTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSG 73

Query: 101 SYTCEVSNGVGEAKSYSIDL 120
            Y C       E  ++ + L
Sbjct: 74  YYVCYPRGSKPEDANFYLYL 93

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 56.4 bits (135), Expect = 4e-09
 Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 12/201 (5%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFR-GYKVQTWTEKDGEGSIRELIV 457
             P  +PSN + +  +     V  W P     L   F           +    +I + + 
Sbjct: 2   GYPPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVA 61

Query: 458 NKGESTTTEVDKFVPASKNFA-RVLAFNGAYNGPPSEIISFVT------PEGVPGTVQSL 510
            K ++  +   K +   +  A  V A N   +    ++           P  +       
Sbjct: 62  KKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGP 121

Query: 511 EAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLA 570
           + +       +L W   +    +    +++YQ         L+  LP     +    +L 
Sbjct: 122 DVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPS----SKDQFELC 177

Query: 571 GLEPSTKYRIHLAGYTKAGDG 591
           GL  +  Y + +     +  G
Sbjct: 178 GLHQAPVYTLQMRCIRSSLPG 198

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 19/156 (12%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNK 292
            K V L C+      P V+    +K          +   L I  +  + +G Y C  +N 
Sbjct: 22  EKPVTLRCQG----PPGVDLYRLEKL---SSSRYQDQAVLFIPAMKRSLAGRYRCSYQNG 74

Query: 293 LGTAQGSGSLT--VKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGS 347
              +  S  L            ++ QP    V +G   T +C               +  
Sbjct: 75  SLWSLPSDQLELVATGVFAKPSLSAQPGP-AVSSGGDVTLQC---QTRYGFDQFALYKEG 130

Query: 348 EPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
           +P  +++  R+ +++     +   +   SG Y C +
Sbjct: 131 DPAPYKNPERWYRAS---FPIITVTAAHSGTYRCYS 163

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 23/178 (12%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
            L  P     P  +    E+ VT  C+      P +      K  S    +         
Sbjct: 5   PLPKPSLQALPSSL-VPLEKPVTLRCQGP----PGVDLYRLEKLSSSRYQDQ------AV 53

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
           + I  +++S  G Y C+  N   +       ++    +   P ++  P    +  G  V 
Sbjct: 54  LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSS-GGDVT 112

Query: 238 LTCRVFGAPKPEVNWIHNQKELTGGRYTILETG---DLKITDVAFADSGEYTCFARNK 292
           L C+     +   +     KE     Y   E        I  V  A SG Y C++ + 
Sbjct: 113 LQCQ----TRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSS 166

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 9/114 (7%)

Query: 88  SLIIKHVEFSDQGSYTCEVSNGVG-EAKSYSIDLSVLAA---PYFTVEPEFINAAEEETV 143
            L I  ++ S  G Y C   NG      S  ++L        P  + +P     +    V
Sbjct: 53  VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPG-PAVSSGGDV 111

Query: 144 TFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGC 197
           T +C  +     +      G P   AP     +       I  +  + +G Y C
Sbjct: 112 TLQC-QTRYGFDQFALYKEGDP---APYKNPERWYRASFPIITVTAAHSGTYRC 161

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 53.8 bits (129), Expect = 5e-09
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 16/104 (15%)

Query: 38  VTRKKEVALRNKKVELFCIFGGTPLP--QTIWSKD-----------GVPINPS--DRISQ 82
            T     A +   + L C    T     Q  W +            G  I+PS  DR++ 
Sbjct: 8   ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67

Query: 83  GNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
           G     L ++ +  +D G Y C          +  I L VL + 
Sbjct: 68  GPGL-GLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 12/106 (11%)

Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES-----------EP 356
           T   +   +   E G S   +C+  S  +    + W +  + +   +           + 
Sbjct: 4   TGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKD 63

Query: 357 RFVQSNDYSLTVTKSSELDSGQYTCRAQT-ELDFIEAQATLTVQVP 401
           R        LT+   +  D+G+Y C   T        +  L V   
Sbjct: 64  RVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 17/101 (16%)

Query: 223 EAPKDEYTVDGKTVVLTCRVFGAPKP--EVNWIHNQKELT--------------GGRYTI 266
           E   +     G +++L C +        +VNW    + L                 R   
Sbjct: 8   ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67

Query: 267 LETGDLKITDVAFADSGEYTC-FARNKLGTAQGSGSLTVKE 306
                L +  +   D+GEY C +     GT  G   L V E
Sbjct: 68  GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLE 108

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 132 PEFINAAEEETVTFECKASGLPEP--EIHWVHNGKPISQAPPNPRRKVGP---NR----- 181
              I+A +  ++  +C  S       +++W    + ++    +    + P   +R     
Sbjct: 10  TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69

Query: 182 ---ITIENLRKSDTGNYGCN-ATNSLGYVYKDVYVNVLAHAPEITEAPK 226
              +T+++L  +DTG Y C   T   G     +++ VL  +       +
Sbjct: 70  GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLE-SSVAEHGAR 117

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 10/111 (9%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQP----NGVLMGYKIKYQSV 544
           G      S             ++A+ L   A  + W     P       +  Y +++++ 
Sbjct: 4   GSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTS 63

Query: 545 KGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
                           D T+ S    GL+P+T Y   +           S 
Sbjct: 64  FSA------SAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSM 108

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 17/118 (14%), Positives = 28/118 (23%), Gaps = 6/118 (5%)

Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSW--NPVSPQSLRGHFRGYKVQTWTEKDG 448
              +   +  P+  P        +      VSW  N V         R Y V+  T    
Sbjct: 8   FPTSVPDLSTPMLPPVGVQ-AVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSA 66

Query: 449 EGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT 506
               +        S +       P +     V+      +   S      T E    +
Sbjct: 67  SAKYKSEDTT---SLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPS 121

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
           +         +L        +  + W     P G ++ Y + Y    G            
Sbjct: 3   SGSSGRSPPSNLALASETPDSLQVSW---TPPLGRVLHYWLTYAPASGLG-----PEKSV 54

Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
                 +   L  L+ +TKYR+ ++    AG  
Sbjct: 55  SVPGARSHVTLPDLQAATKYRVLVSAIYAAGRS 87

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 21/108 (19%), Positives = 29/108 (26%), Gaps = 8/108 (7%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
           +       PSN  L          VSW P       G    Y + T+    G G  + + 
Sbjct: 3   SGSSGRSPPSNLALASE-TPDSLQVSWTPPL-----GRVLHYWL-TYAPASGLGPEKSVS 55

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
           V  G  +   +     A+K    V A   A                 P
Sbjct: 56  VP-GARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGP 102

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 486 AYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVK 545
            Y     +  +      V      LE +    ++  + W   + P   +  Y+I Y    
Sbjct: 11  DYKDDDDKGENLYFQGSVSDVPTKLEVVAATPTSLLISW---DAPAVTVRYYRITYGETG 67

Query: 546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
           G    P+ E   +    + ++A ++GL+P   Y I +   T        
Sbjct: 68  GN--SPVQE---FTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
           + +         + P+   ++        ++SW+  +        R Y++ T+ E  G  
Sbjct: 18  KGENLYFQGSVSDVPTKLEVVAA-TPTSLLISWDAPA-----VTVRYYRI-TYGETGGNS 70

Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 493
            ++E  V   +ST T +    P       V A  G        
Sbjct: 71  PVQEFTVPGSKSTAT-ISGLKPGVDYTITVYAVTGLRLMLAGS 112

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 21/107 (19%)

Query: 315 EDYEVEAGQSATFRCN-AVSDPSLKLSIVWLRGSEP---------------IDFESEPRF 358
           + Y+VE G++A   C+  +      + + W +G  P               + ++   R+
Sbjct: 2   DGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRY 61

Query: 359 -----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
                +   D SL +   +  D G Y CR Q      + +  L + +
Sbjct: 62  QLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* Length = 116

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 20/107 (18%)

Query: 315 EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEP---------------IDFESEPRF- 358
           +      GQ  T  C+ +S    + S+ W +GS P               I      ++ 
Sbjct: 4   DTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYT 63

Query: 359 ----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
               VQ  + SLT++ ++  DSG Y CR +    F + +  + +++ 
Sbjct: 64  LLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELR 110

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 53.6 bits (128), Expect = 1e-08
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 15/138 (10%)

Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEH--THITDQPEDYEVEAGQSATFRCNAVSDPSL 337
           A   E        LGT     ++               D  V AG +   +C        
Sbjct: 9   AAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDS 68

Query: 338 KLSIVWLRGSEPIDFE------SEPRFV----QSNDYSLTVTKSSELDSGQYTCRAQTEL 387
            L   W   ++   +        + R        ++ S++++  +  D G+YTC   T  
Sbjct: 69  SLQ--WSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM- 125

Query: 388 DFIEAQATLTVQVPLEAP 405
               A++ +TV    + P
Sbjct: 126 PVRTAKSLVTVLGIPQKP 143

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 14/113 (12%)

Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTV-DGKTVVLTCRVFGAPK 247
            +         +  LG    D  +  +  + + ++    + TV  G TVVL C+V     
Sbjct: 8   AAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHED 67

Query: 248 PEVNWI---------HNQKELTGGRYTILETGD----LKITDVAFADSGEYTC 287
             + W            ++ L   R  ++ +      + I++VA AD GEYTC
Sbjct: 68  SSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTC 120

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 45.9 bits (108), Expect = 5e-06
 Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 13/111 (11%)

Query: 27  SQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--------DGVPINPSD 78
           +    +          E  +    V L C           WS                 +
Sbjct: 32  ADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDN 91

Query: 79  RISQGNYGK---SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
           RI          S+ I +V  +D+G YTC +       ++    ++VL  P
Sbjct: 92  RIQLVTSTPHELSISISNVALADEGEYTCSIFT--MPVRTAKSLVTVLGIP 140

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 13/108 (12%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPI-----SQAPPNPRRKVGPN 180
                           TV  +C+     +  + W +  +        +A  + R ++  +
Sbjct: 39  DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS 98

Query: 181 -----RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA--HAPEI 221
                 I+I N+  +D G Y C+   ++        V VL     P I
Sbjct: 99  TPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTVLGIPQKPII 145

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 17/161 (10%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTILETGD---LKITDVAFADSGEYTCF 288
           G +V + C+  G  +     +   +      R   LE  +     I  +    +G Y C+
Sbjct: 19  GNSVTIWCQ--GTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCY 76

Query: 289 ARNKLGTAQGSGSL--TVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
            R+ +G +Q S  L   +        ++  P    V +G+S T  C      S   + + 
Sbjct: 77  YRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPL-VTSGKSVTLLC---QSRSPMDTFLL 132

Query: 344 LR--GSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCR 382
            +   + P+         Q +     ++  + +  G Y C 
Sbjct: 133 CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCF 173

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 19/183 (10%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
            L  P    EP  +  +   +VT  C+ + L   E        P      NP       R
Sbjct: 2   PLPKPTLWAEPGSV-ISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKAR 59

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
            +I ++ +   G Y C   + +G+       ++ +      P ++  P    T  GK+V 
Sbjct: 60  FSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTS-GKSVT 118

Query: 238 LTCRVFGAPKPEVNWIHNQKE--------LTGGRYTILETGDLKITDVAFADSGEYTCFA 289
           L C+     +  ++     KE        L           +  ++ V     G Y CF+
Sbjct: 119 LLCQ----SRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFS 174

Query: 290 RNK 292
            + 
Sbjct: 175 SHG 177

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 12/155 (7%)

Query: 51  VELFCIFGGTPLPQT-IWSKDGVPINPSDRISQGNYGKS-LIIKHVEFSDQGSYTCEVSN 108
           V ++C   GT   +     K+  P     +       K+   I  +     G Y C   +
Sbjct: 22  VTIWC--QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRS 79

Query: 109 GVG-EAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK 164
            VG    S  ++L +    + P  +  P        ++VT  C  S  P           
Sbjct: 80  PVGWSQPSDPLELVMTGAYSKPTLSALPS-PLVTSGKSVTLLC-QSRSPMDTFLLCKERA 137

Query: 165 PISQAPPNPRRKVGPNRI--TIENLRKSDTGNYGC 197
                          ++    +  +     G Y C
Sbjct: 138 AHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 561
           GV    + LE +    ++  + W   +   G    Y+I Y    G               
Sbjct: 2   GVSDVPRDLEVVAATPTSLLISW---DSGRGSYQYYRITYGETGGNSPVQEFT-----VP 53

Query: 562 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
               +A ++GL+P   Y I +   T     A+ 
Sbjct: 54  GPVHTATISGLKPGVDYTITVYAVTDHKPHADG 86

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 43/230 (18%), Positives = 72/230 (31%), Gaps = 28/230 (12%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
           L  P+   EP F+   +E+ VT  C+ +     E      G   +   P P  ++   + 
Sbjct: 5   LPKPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKF 62

Query: 183 TIENLRKSDTGNYGCNATNSLGY----VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
            I ++     G Y C       +       D+ V  +   P ++  P     + G+ V  
Sbjct: 63  YIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTF 121

Query: 239 TCRVFGAPKPEVNWIHNQKELTGGRYTILE------TGDLKITDVAFADSGEYTCFARNK 292
            CR         +     KE   GR + ++        +  +  V  A  G Y CF    
Sbjct: 122 YCR----LDTATSMFLLLKE---GRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN 174

Query: 293 LGTAQGSGS-----LTVKE-HTHITDQPEDYEVEAGQSATFRCNAVSDPS 336
                 S       L V     + +  PED    A    T+     +   
Sbjct: 175 --NHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGLQ 222

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 33/186 (17%), Positives = 56/186 (30%), Gaps = 21/186 (11%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTILETGD---LKITDVAFADSGEYTCF 288
            K V + C+  G        +H         R    E  +     I D+    +G+Y+C 
Sbjct: 21  EKQVTICCQ--GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI 78

Query: 289 ARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
            R     ++ S  L +          ++  P    V +G+  TF C   +  S     + 
Sbjct: 79  YRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLDTATS---MFLL 134

Query: 344 LRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT---ELDFIEAQATLTVQV 400
           L+       +     VQ+      +   +    G Y C          F      L V  
Sbjct: 135 LKEGRSSHVQRGYGKVQAE---FPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG 191

Query: 401 PLEAPS 406
            +E  S
Sbjct: 192 DIENTS 197

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 34/201 (16%), Positives = 52/201 (25%), Gaps = 18/201 (8%)

Query: 51  VELFCIFGGTPLPQT-IWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSN 108
           V + C   G           +G               K    I  +     G Y+C    
Sbjct: 24  VTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV 81

Query: 109 GVGE-AKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK 164
           G      S  +DL V      P  +V P        E VTF C            +  G+
Sbjct: 82  GELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMFLLLKEGR 139

Query: 165 PISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD----VYVNVLAHAPE 220
             S        KV      +  +  +  G Y C  + +  + +      V + V      
Sbjct: 140 --SSHVQRGYGKVQAE-FPLGPVTTAHRGTYRCFGSYN-NHAWSFPSEPVKLLVTGDIEN 195

Query: 221 ITEAPKDEYTVDGKTVVLTCR 241
            + AP+D              
Sbjct: 196 TSLAPEDPTFPADTWGTYLLT 216

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 55.0 bits (131), Expect = 4e-08
 Identities = 30/180 (16%), Positives = 50/180 (27%), Gaps = 13/180 (7%)

Query: 418 KAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNF 477
             V+ W+     +       +         G    +   +   E+  T    F       
Sbjct: 221 NYVLKWDY--TYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQK 278

Query: 478 ----ARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV 533
                RV A +G      SE I F T               L  S F++    P+Q    
Sbjct: 279 GIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDS-FHIYIGAPKQSGNT 337

Query: 534 LM--GYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
            +   Y + Y+ +   +     ER         T   +  L+P T Y +    +T     
Sbjct: 338 PVIQDYPLIYE-IIFWENTSNAER---KIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKL 393

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 44/350 (12%), Positives = 80/350 (22%), Gaps = 62/350 (17%)

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFR----GYKVQTWTEKDGEGSIRELIV 457
           L++P     + +ID    ++ WN          F        +  W +  G  +I     
Sbjct: 8   LKSPQKVE-VDIIDDN-FILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITS--- 62

Query: 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGS 517
                      K     +   R+ A          E+ SF            +       
Sbjct: 63  ---TKCNFSSLKLNVYEEIKLRIRAEKENT-SSWYEVDSFTPFRKAQIGPPEVHLEAEDK 118

Query: 518 S-AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 576
           +   ++     +     L G    Y  V       + ER+        +  K+  L P T
Sbjct: 119 AIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIE----NIYSRHKIYKLSPET 174

Query: 577 KYRIHLAGYTKAGDG------AESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEH 630
            Y + +                            P           N V+ W       +
Sbjct: 175 TYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWD--YTYAN 232

Query: 631 NAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGS 690
                ++   + + N G    +                             W +     +
Sbjct: 233 MTFQVQWLHAFLKRNPGNHLYK-----------------------------WKQIPDCEN 263

Query: 691 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
           ++             V +         RV A +G      SE I F T  
Sbjct: 264 VKTTQCV----FPQNVFQKGIYL---LRVQASDGNNTSFWSEEIKFDTEI 306

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 53.4 bits (127), Expect = 5e-08
 Identities = 40/231 (17%), Positives = 69/231 (29%), Gaps = 17/231 (7%)

Query: 365 SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN-FTLIQVIDAKKAVVSW 423
           S+++    E+  G+        +D +           L    N F  ++ I      V+ 
Sbjct: 15  SVSLEALEEVQVGENI-EVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNA 73

Query: 424 NPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAF 483
             +    +R        +    K+    +      K E +   V     +S      L  
Sbjct: 74  KKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTN---SSVGDGEGLVH 130

Query: 484 NGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQS 543
             A       II   +PE V   V+  +A  +      + W +PE   G+  GY +    
Sbjct: 131 EIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEGL-EGYILYKD- 188

Query: 544 VKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
             G KV  +            TS     L   T Y   +A     G+ +  
Sbjct: 189 --GKKVAEI--------GKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSK 229

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115

 Score = 50.7 bits (121), Expect = 5e-08
 Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 20/109 (18%)

Query: 312 DQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID---------------FESEP 356
           +     +  AG   T  C   +     + + W  G                     +   
Sbjct: 2   ESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNS 61

Query: 357 RF-----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
           R+     +   + SLT+  +   D G Y C  +    F      L V+ 
Sbjct: 62  RYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKP 110

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 54.2 bits (129), Expect = 6e-08
 Identities = 48/353 (13%), Positives = 86/353 (24%), Gaps = 68/353 (19%)

Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
           PL++P    +  + D    ++ WN             +                   N  
Sbjct: 3   PLKSPQKVEVDIIDD--NFILRWNRSDESVGNVT---FSFDYQKTGMDNWIKLSGCQN-- 55

Query: 461 ESTTTEVD----KFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLG 516
             T+T+ +    K     +   R+ A     +    E+ SF            +      
Sbjct: 56  -ITSTKCNFSSLKLNVYEEIKLRIRAEKENTS-SWYEVDSFTPFRKAQIGPPEVHLEAED 113

Query: 517 SS-AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 575
            +   ++     +     L G    Y  V       + ER+    +   +  K+  L P 
Sbjct: 114 KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERI----ENIYSRHKIYKLSPE 169

Query: 576 TKYRIHLAGYTKAGD--GAESK----YLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIE 629
           T Y + +          G  S              P           N V+ W       
Sbjct: 170 TTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWD--YTYA 227

Query: 630 HNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEG 689
           +     ++   + + N G    +     W+Q                             
Sbjct: 228 NMTFQVQWLHAFLKRNPGNHLYK-----WKQ----------------------------- 253

Query: 690 SIRELIVNKGESTTTEVDKFVPASKN---FARVLAFNGAYNGPPSEIISFVTP 739
                I +     TT+        +      RV A +G      SE I F T 
Sbjct: 254 -----IPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTE 301

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 25/209 (11%), Positives = 56/209 (26%), Gaps = 13/209 (6%)

Query: 395 TLTVQVPLEAPSNFTLIQVIDAKKAV-VSWNPVSPQS----LRGHFRGYKVQTWTEKDGE 449
             +     +A      + +    KA+ +  +P +  S    L G    Y +  W    G 
Sbjct: 91  VDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGV 150

Query: 450 GSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN--GAYNGPPSEIISFVTPEGVPGTV 507
                    +   +  ++ K  P +    +V A        G  S +    T        
Sbjct: 151 -----EERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPP 205

Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
                + + +  + LKW          + +   +            +++P   +  TT  
Sbjct: 206 PENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQC 265

Query: 568 KL-AGLEPSTKYRIHLAGYTKAGDGAESK 595
                +     Y + +           S+
Sbjct: 266 VFPQNVFQKGIYLLRVQASDGNNTSFWSE 294

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 20/184 (10%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
            L+      EP  +  +   +VT  C+ + L   E   V  G P      NP       R
Sbjct: 2   NLSKATLWAEPGSV-ISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKAR 59

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVV 237
            +I ++ +   G Y C   +  G+       ++ V    + P ++  P    T  G+ V 
Sbjct: 60  FSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTS-GENVT 118

Query: 238 LTCRVFGAP---------KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCF 288
           L C                 +++W  + +    G++         +  V  +      C+
Sbjct: 119 LQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQF----QALFPVGPVTPSHRWMLRCY 174

Query: 289 ARNK 292
              +
Sbjct: 175 GSRR 178

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 23/165 (13%), Positives = 47/165 (28%), Gaps = 22/165 (13%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKE------LTGGRYTILETGDLKITDVAFADSGEYT 286
           G +V + C+       E       KE       T             I  +    +G Y 
Sbjct: 19  GNSVTIRCQG----TLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYR 74

Query: 287 CFARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSI 341
           C+  +  G ++ S  L +          ++  P    V +G++ T +C +          
Sbjct: 75  CYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSP-VVTSGENVTLQCGSRLRFD---RF 130

Query: 342 VWLR-GSEPIDFESEPRFVQSNDYS--LTVTKSSELDSGQYTCRA 383
           +    G   + +  + +   S  +     V   +        C  
Sbjct: 131 ILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 26/160 (16%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSNG 109
           V + C  G     +    K+G P     +       K    I  +     G Y C   + 
Sbjct: 22  VTIRCQ-GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP 80

Query: 110 VGE-AKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
            G    S  ++L V      P  +  P        E VT +C  S L          G  
Sbjct: 81  AGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQC-GSRLRFDRFILTEEGDH 138

Query: 166 ISQAPPNPRRKVGPNRI---TIENLRKSDTGNYGCNATNS 202
                 + +            +  +  S      C  +  
Sbjct: 139 KLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRR 178

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 52.8 bits (126), Expect = 7e-08
 Identities = 28/199 (14%), Positives = 53/199 (26%), Gaps = 15/199 (7%)

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQS-------LRGHFRGYKVQTWTEKDGEGSIRE 454
           ++   N +        K    W+  + QS       LR H                  ++
Sbjct: 1   IDVNINISCETDGYLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKD 60

Query: 455 LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGV-PGTVQSLEAI 513
             +                S     +   +   +   S     +    V P    S++A 
Sbjct: 61  CYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAE 119

Query: 514 PLGSS-AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL 572
              +     + W KP  P   L  ++I+Y          + E    + D  + S  L   
Sbjct: 120 ITINIGLLKISWEKPVFPENNLQ-FQIRYGLSGKEVQWKMYE----VYDAKSKSVSLPVP 174

Query: 573 EPSTKYRIHLAGYTKAGDG 591
           +    Y + +      G G
Sbjct: 175 DLCAVYAVQVRCKRLDGLG 193

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 13/103 (12%)

Query: 496 SFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 555
           S  +    P   + LEA  +      L W    +P     GY + + +  G         
Sbjct: 3   SGSSGLEAP---RDLEAKEVTPRTALLTW---TEPPVRPAGYLLSFHTPGGQ-------T 49

Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF 598
              +     TS +L GL PST Y   L               F
Sbjct: 50  QEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSF 92

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
           +    LEAP +    +V   + A+++W             GY +   T     G  +E++
Sbjct: 3   SGSSGLEAPRDLEAKEV-TPRTALLTWTEPP-----VRPAGYLLSFHTP---GGQTQEIL 53

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
           +  G  T+ ++    P++   AR+ A  G    PP    SF T
Sbjct: 54  LP-GGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVS-TSFTT 94

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 6/107 (5%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
              S    F T    P             ++  L+W  P      +  + +++   KG  
Sbjct: 3   SGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGN- 61

Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
                         +    K+  L P+   +  L+     G    S+
Sbjct: 62  -----GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSE 103

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 6/114 (5%)

Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
            A+   T+    + P+   +          + W    P       + + ++     +G+G
Sbjct: 7   GAEIFTTLSCEPDIPNPPRIANR-TKNSLTLQWKA--PSDNGSKIQNFVLEW---DEGKG 60

Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
           +        G     ++ K  PA     R+ A N       SE + + T     
Sbjct: 61  NGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 18/160 (11%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIH-NQKELTGGRYTILETGD---LKITDVAFADSGEYTCF 288
            K V + C+  G        +H         R    E  +     I D+    +G+Y+C 
Sbjct: 18  EKQVTICCQ--GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI 75

Query: 289 ARNKLGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
            R     ++ S  L +          ++  P    V +G+  TF C   +  S     + 
Sbjct: 76  YRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE-VISGEKVTFYCRLDTATS---MFLL 131

Query: 344 LRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRA 383
           L+       +     VQ+      +   +    G Y C  
Sbjct: 132 LKEGRSSHVQRGYGKVQAE---FPLGPVTTAHRGTYRCFG 168

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 20/180 (11%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
           L  P+   EP F+   +E+ VT  C+ +     E      G   +   P P  ++   + 
Sbjct: 2   LPKPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKF 59

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYK----DVYVNVLAHAPEITEAPKDEYTVDGKTVVL 238
            I ++     G Y C       +       D+ V  +   P ++  P     + G+ V  
Sbjct: 60  YIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTF 118

Query: 239 TCRVFGAPKPEVNWIHNQKELTGGRYTILE------TGDLKITDVAFADSGEYTCFARNK 292
            CR+        +     KE   GR + ++        +  +  V  A  G Y CF    
Sbjct: 119 YCRL----DTATSMFLLLKE---GRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN 171

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 11/157 (7%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSNG 109
           V + C  G     +     +G               K    I  +     G Y+C    G
Sbjct: 21  VTICC-QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG 79

Query: 110 VGE-AKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKP 165
                 S  +DL V      P  +V P        E VTF C            +  G+ 
Sbjct: 80  ELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMFLLLKEGRS 137

Query: 166 ISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS 202
                   + +       +  +  +  G Y C  + +
Sbjct: 138 SHVQRGYGKVQA---EFPLGPVTTAHRGTYRCFGSYN 171

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 21/110 (19%)

Query: 312 DQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID---------------FESEP 356
           D   + +   G   T  C   +   +  +  W RG  P                 ++   
Sbjct: 2   DSYVEVKGVVGHPVTLPCTYSTYRGI-TTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSS 60

Query: 357 RF-----VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           R+     +   D SLT+  S E DSG Y CR +    F + + T ++QV 
Sbjct: 61  RYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVK 110

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Length = 207

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 25/176 (14%)

Query: 233 GKTVVLTCRVFG-APKP---EVNWIHNQKELTGGRYTILETGD---------LKITDVAF 279
             T  +TC V   +      + +W  +  E+   +    E            L I    +
Sbjct: 18  TLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDW 77

Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEHT----HITDQPEDYEVEAGQSATFRCNAVSDP 335
            +  E+ C   +    A    +++  +       +   P   E  A    +  C  ++D 
Sbjct: 78  LNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTC-MITDF 136

Query: 336 SLK-LSIVWLRGSEPIDFESEPRFVQSND--YS----LTVTKSSELDSGQYTCRAQ 384
             + +++ W    +P +     + +   D  Y     L V KS+      +TC   
Sbjct: 137 FPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVL 192

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Length = 207

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 16/143 (11%)

Query: 42  KEVALRNKKVELFCI---FGGTPLPQTI-WSKDGVPIN---PSDRISQGNYGKS----LI 90
           K+V       ++ C+              W  D V ++      R  Q N        L 
Sbjct: 12  KDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELP 71

Query: 91  IKHVEFSDQGSYTCEVSNG---VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFEC 147
           I H ++ +   + C V++        K+ S       AP     P       ++ V+  C
Sbjct: 72  IMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTC 131

Query: 148 KASGL-PEP-EIHWVHNGKPISQ 168
             +   PE   + W  NG+P   
Sbjct: 132 MITDFFPEDITVEWESNGQPAEN 154

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 500 PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 559
           P G      S     + +S+F + WV        + G++++Y+  +        E     
Sbjct: 2   PLGSHLVATSESVTEITASSFVVSWVSASDT---VSGFRVEYELSEEGD-----EPQYLD 53

Query: 560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
              T TS  +  L P  KY +++   ++ G+ +  
Sbjct: 54  LPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLI 88

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
           + L    +   +  + W   E P G +  Y++ Y S +          L    D    +A
Sbjct: 6   KGLAFTDVDVDSIKIAW---ESPQGQVSRYRVTYSSPEDGI-----HELFPAPDGEEDTA 57

Query: 568 KLAGLEPSTKYRIHLAGYTKAGDG 591
           +L GL P ++Y + +       + 
Sbjct: 58  ELQGLRPGSEYTVSVVALHDDMES 81

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 23/127 (18%), Positives = 33/127 (25%), Gaps = 28/127 (22%)

Query: 297 QGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLK-LSIVWLRGSEP------ 349
           +GSG   V                 G  A   C      +   + + W R          
Sbjct: 2   RGSGQFRV------IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLY 55

Query: 350 -----IDFESEPRF----------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
                 D E  P +          +     +L +      D G YTC  +      EA  
Sbjct: 56  RNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAV 115

Query: 395 TLTVQVP 401
            L V+ P
Sbjct: 116 ELKVEDP 122

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 48.4 bits (115), Expect = 7e-07
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 75  NPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
              + I +G    +L I++V FSD+G YTC   +     +  +++L V   P++ + P
Sbjct: 75  LLKESIGEGKV--ALRIQNVRFSDEGGYTCFFRDH-SYQEEAAVELKV-EDPFYWINP 128

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 28/112 (25%)

Query: 223 EAPKDEYTVD-GKTVVLTCRV---FGAPKPEVNW-----------IHNQKELTG------ 261
             P        G    L CR+     A   EV W             N K+         
Sbjct: 10  IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 69

Query: 262 -GRYTI----LETGD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            GR  +    +  G   L+I +V F+D G YTCF R+     + +  L V++
Sbjct: 70  RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 121

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 26/112 (23%), Positives = 34/112 (30%), Gaps = 24/112 (21%)

Query: 129 TVEPEFINAAEEETVTFECKAS---GLPEPEIHW--------VH---NGK--PISQAPPN 172
                 I A   +     C+ S        E+ W        VH   NGK     QAP  
Sbjct: 10  IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 69

Query: 173 PRR--------KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
             R          G   + I+N+R SD G Y C   +        V + V  
Sbjct: 70  RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 121

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 9/91 (9%)

Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
               + L    +   A  + W   E     +   ++ Y S +G   G         +   
Sbjct: 8   LAPPRHLGFSDVSHDAARVFW---EGAPRPVRLVRVTYVSSEGGHSGQTE------APGN 58

Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
            TSA L  L  ST Y + +      G  +  
Sbjct: 59  ATSAMLGPLSSSTTYTVRVTCLYPGGGSSTL 89

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 11/105 (10%)

Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
            L  P +     V     A V W            R  +V T+   +G G   +     G
Sbjct: 7   GLAPPRHLGFSDV-SHDAARVFWEGAP-----RPVRLVRV-TYVSSEG-GHSGQTEAP-G 57

Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
            +T+  +     ++    RV                 VT +  P 
Sbjct: 58  NATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGR--VTTKKAPS 100

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 10/114 (8%)

Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
            P     L A+ L      L W   + P   +  Y I+  +     +             
Sbjct: 7   GPDGPTQLRALNLTEGFAVLHW---KPPQNPVDTYDIQVTAPGAPPLQAET-------PG 56

Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPN 616
           +     L  L   T Y   + G       + +   F    + P ++E +  TP+
Sbjct: 57  SAVDYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTPS 110

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
           +     + P+    + + +   AV+ W P            Y +   T         E  
Sbjct: 3   SGSSGPDGPTQLRALNLTE-GFAVLHWKPPQ-----NPVDTYDI-QVTAPGAPPLQAET- 54

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLG 516
              G +    +   V  +   A V    G     P+  I+F T    P  +++ E  P G
Sbjct: 55  --PGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPAS-ITFTTGLEAPRDLEAKEVTPSG 111

Query: 517 SSA 519
            S+
Sbjct: 112 PSS 114

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP- 557
              G    +  L    + +S+  L W   E P G    + +++     + + P    L  
Sbjct: 4   GSSGSRPRLSQLSVTDVTTSSLRLNW---EAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQ 60

Query: 558 --YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
              +   T  SA L  L   T Y + L G       
Sbjct: 61  RELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKA 96

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 48/302 (15%), Positives = 88/302 (29%), Gaps = 46/302 (15%)

Query: 224 APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSG 283
                    G+ VVLTC      +  + W  +Q     G    L      I    F D+G
Sbjct: 12  ELDWYPDAPGEMVVLTCD--TPEEDGITWTLDQSSEVLGSGKTL-----TIQVKEFGDAG 64

Query: 284 EYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVW 343
           +YTC    ++ +      L  KE    +      + E       RC A  + S + +  W
Sbjct: 65  QYTCHKGGEVLSHS-LLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEA-KNYSGRFTCWW 122

Query: 344 LRGSEPIDF---------ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQA 394
           L                                     +    +Y+   Q +     A+ 
Sbjct: 123 LTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEE 182

Query: 395 TLTVQVPLEA-----------------------PSNFTLIQVIDAKKAVVSWNPVSPQSL 431
           +L ++V ++A                       P N  L  + ++++  VSW    P + 
Sbjct: 183 SLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEY--PDTW 240

Query: 432 RGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPP 491
                 + +    +  G+    +      + T+  V   +        V A +  Y+   
Sbjct: 241 STPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATV---ICRKNASISVRAQDRYYSSSW 297

Query: 492 SE 493
           SE
Sbjct: 298 SE 299

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 45.9 bits (107), Expect = 3e-05
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 15/140 (10%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL 187
           + VE ++   A  E V   C      E  I W  +         +         +TI+  
Sbjct: 9   YVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQ--------SSEVLGSGKTLTIQVK 58

Query: 188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVD-GKTVVLTCRVFGAP 246
              D G Y C+    +        + +      I      +   +      L C      
Sbjct: 59  EFGDAGQYTCHKGGEVL---SHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYS 115

Query: 247 KP-EVNWIHNQKELTGGRYT 265
                 W+            
Sbjct: 116 GRFTCWWLTTISTDLTFSVK 135

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 47/195 (24%)

Query: 233 GKTVVLTCRVFGAPKPE-----VNWIHNQKELTGGRYTI--------------------- 266
              V + C +F +         + W   +         +                     
Sbjct: 18  NDNVTIFCNIFYSQPLNITSMGITW-FWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWR 76

Query: 267 LETGD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQS 324
           L++GD  L++  +   ++GEY C        AQG+  L V          +         
Sbjct: 77  LKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ-VGMKENE 135

Query: 325 ATFRCNAVSD--PSLKLSIVWLRGSEPIDFE---------SEPRFVQSNDYS----LTVT 369
             + C   S   P   ++I W + ++                        ++    L + 
Sbjct: 136 DKYMCE-SSGFYPE-AINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLN 193

Query: 370 KSSELDSGQYTCRAQ 384
            S E     Y C  +
Sbjct: 194 SSQEDPGTVYQCVVR 208

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 33/226 (14%), Positives = 58/226 (25%), Gaps = 44/226 (19%)

Query: 141 ETVTFECKASGLPEPE-----IHW------------VHNGKPISQAPPNPRRKVGPNR-- 181
           + VT  C              I W            V       Q    P   V P R  
Sbjct: 19  DNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLK 78

Query: 182 -----ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTV 236
                + +  ++  + G Y C    +       V + V+A +P           +     
Sbjct: 79  SGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA-SPASRLLLDQV-GMKENED 136

Query: 237 VLTCRVFG-APKP-EVNWIHN------QKELTGGRYT--ILETGD--------LKITDVA 278
              C   G  P+   + W           E++    T   ++  D        LK+    
Sbjct: 137 KYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQ 196

Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQS 324
                 Y C  R+         + T+    H   + E  +  +  +
Sbjct: 197 EDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLSETEKTDNFSAAA 242

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 77  SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN 136
             R+  G+   SL +  ++  + G Y CEV     +A+  ++ L V+A+P   +  +   
Sbjct: 74  PWRLKSGDA--SLRLPGIQLEEAGEYRCEVVVTPLKAQG-TVQLEVVASPASRLLLD-QV 129

Query: 137 AAEEETVTFECKASG-LPEP-EIHWVHNGKPISQAPP 171
             +E    + C++SG  PE   I W    +       
Sbjct: 130 GMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE 166

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 22/111 (19%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSL---KLSIVWLR-----GSEPIDFE----------- 353
                      + T  CN      L    + I W         E   FE           
Sbjct: 9   AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRP 68

Query: 354 ---SEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
                P  ++S D SL +      ++G+Y C         +    L V   
Sbjct: 69  GAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS 119

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 11/100 (11%)

Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
            +++   +  +   + W  P  P   + G  + +            +        + TS 
Sbjct: 6   FNIKVTNITLTTAVVTWQPPILP---IEGILVTFGRKNDPS-----DETTVDLTSSITSL 57

Query: 568 KLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY---VPFKN 604
            L  LEP+T Y I +               F    +   +
Sbjct: 58  TLTNLEPNTTYEIRIVARNGQQYSPPVSTTFTTGSLEHHH 97

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLP 557
           +    P +    +  P  S+A  +++ +PE   GV ++ YK ++++V             
Sbjct: 3   SGSSGPSSPSIDQVEPYSSTA-QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 61

Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
             S        + GL+P T Y + LA     G G  S
Sbjct: 62  EAS--MEGIVTIVGLKPETTYAVRLAALNGKGLGEIS 96

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 27/129 (20%), Positives = 39/129 (30%), Gaps = 33/129 (25%)

Query: 299 SGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSL--KLSIVWLRGSEP------- 349
           + SL++      T   E  E   G++A   C     P     L I WL            
Sbjct: 3   ARSLSI------TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQV 56

Query: 350 --------IDFESEPRF----------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
                   I  +  P            ++S D S+ VT     D G Y C+ +       
Sbjct: 57  IILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVAN 116

Query: 392 AQATLTVQV 400
            +  L V V
Sbjct: 117 KKIHLVVLV 125

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 76  PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
            S+ +  G+   S+ + +++ SD G+Y C+V    G A    I L VL
Sbjct: 80  TSNDLKSGDA--SINVTNLQLSDIGTYQCKVKKAPGVANK-KIHLVVL 124

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 33/115 (28%)

Query: 223 EAPKDEYTVD-GKTVVLTCRVFGAPKP----EVNWI---------------HNQKELTG- 261
             P++      G+T  L C+   +P+     ++ W+               ++  ++   
Sbjct: 9   TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDD 68

Query: 262 ------GRYTILET----GD--LKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
                 GR          GD  + +T++  +D G Y C  +   G A     L V
Sbjct: 69  YYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 31/119 (26%)

Query: 128 FTVE--PEFINAAEEETVTFECKASGLPEP----EIHWVHNGKPISQAPP-----NPRRK 176
            ++    E I  A+ ET    CK +  PE     +I W+ +     +        +  + 
Sbjct: 6   LSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKI 65

Query: 177 VGP------NR--------------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
                     R              I + NL+ SD G Y C    + G   K +++ VL
Sbjct: 66  YDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 28/167 (16%), Positives = 45/167 (26%), Gaps = 6/167 (3%)

Query: 343 WLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTE-LDFIEAQATLTVQVP 401
            L           P           +     + +  YT           +     +  V 
Sbjct: 38  QLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHVK 97

Query: 402 LEAPSNFTLIQVIDAKKAVVSWN-PVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
             AP N T+   +     +++W+ P  P +   +   Y V  W+E D        +    
Sbjct: 98  PRAPGNLTVHTNVSDT-LLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 156

Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---IISFVTPEGVP 504
            S               ARV A+  AYN   SE      +      P
Sbjct: 157 PSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREP 203

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 8/84 (9%)

Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
             +E   +  +   + W     P+  + G+++ Y            +R            
Sbjct: 7   SQIEVKDVTDTTALITW---MPPSQPVDGFELTYGIKDVPG-----DRTTIDLTEDENQY 58

Query: 568 KLAGLEPSTKYRIHLAGYTKAGDG 591
            +  L+P T+Y + L         
Sbjct: 59  SIGNLKPDTEYEVSLISRRGDMSS 82

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           + L+APS   +  V     A+++W P S         G+++ T+  KD  G    + +  
Sbjct: 1   MRLDAPSQIEVKDV-TDTTALITWMPPS-----QPVDGFEL-TYGIKDVPGDRTTIDLT- 52

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
            +     +    P ++    +++  G  +  P++  +F T     
Sbjct: 53  EDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAK-ETFTTGLAAA 96

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 25/107 (23%)

Query: 45  ALRNKKVELFCIFGGTPLP-----QTIWSKD-------------GVPINPSDRIS----- 81
                 V L C      +      Q  W++              G   + S R+      
Sbjct: 12  GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 71

Query: 82  --QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
                   SL +  +   D+G+YTC        ++S  I L VLA P
Sbjct: 72  LGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 498 VTPEGVPGT-VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL 556
            +   VP T +  LE     +++  L W +P        GY ++     G +        
Sbjct: 4   GSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFRE----- 58

Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
             +     T   + GL  ++ Y   +  + K G    S
Sbjct: 59  --VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYS 94

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 27/108 (25%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
           +  VP   P             A +SW    P        GY ++   + +G        
Sbjct: 6   SGPVP-ATPILQLEECCTHNNSATLSWKQ--PPLSTVPADGYILE-LDDGNGGQFRE--- 58

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
           V  G+ T   VD     S   ARV AFN     P S+ +   T EG  
Sbjct: 59  VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 31/187 (16%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIH------------NQKELTGGRYTILETGDL 272
           P  E  + G    LTC + G                        +    G Y++  +  L
Sbjct: 11  PALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSV--SSVL 68

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITD----QPEDYEVEAGQSATFR 328
                 +     +TC A         + +L+   +T   +     P   E+   +  T  
Sbjct: 69  PGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLT 128

Query: 329 CNAVSDPSLK-LSIVWLRGSEPID------FESEPRFVQSND----YS-LTVTKSSELDS 376
           C      S K + + WL+GS+ +       + S     Q        S L V        
Sbjct: 129 C-LARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKG 187

Query: 377 GQYTCRA 383
             ++C  
Sbjct: 188 DTFSCMV 194

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 13/139 (9%)

Query: 43  EVALRNKKVELFCIFGGTPLPQTI---WSKDG---VPINPSDRISQGNYGKS--LIIKHV 94
           E  L   +  L C   G      +   W+          P +R   G Y  S  L     
Sbjct: 14  EDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAE 73

Query: 95  EFSDQGSYTCEVSN---GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG 151
            ++   ++TC  +          + S   +        + P     A  E VT  C A G
Sbjct: 74  PWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARG 133

Query: 152 L--PEPEIHWVHNGKPISQ 168
               +  + W+   + + +
Sbjct: 134 FSPKDVLVRWLQGSQELPR 152

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 27/150 (18%), Positives = 43/150 (28%), Gaps = 12/150 (8%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWV----HNGKPISQAPPNPRRKVGPNRI- 182
               P   +          C  +GL +           +GK   Q PP        +   
Sbjct: 7   SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSS 66

Query: 183 --TIENLRKSDTGNYGCNATNS--LGYVYKDVYVNVLAHAPEIT-EAPKDEYTVDGKTVV 237
                    +    + C A        +   +  +     PE+    P  E     + V 
Sbjct: 67  VLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVT 126

Query: 238 LTCRVFG-APKP-EVNWIHNQKELTGGRYT 265
           LTC   G +PK   V W+   +EL   +Y 
Sbjct: 127 LTCLARGFSPKDVLVRWLQGSQELPREKYL 156

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 13/93 (13%)

Query: 504 PGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 561
             +  SL+ +        L W   +P  P G L  Y++   + +  +         +   
Sbjct: 10  SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNL-SYELHVLN-QDEE---------WHQM 58

Query: 562 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                  L  L+P T Y + +   T  G G  S
Sbjct: 59  VLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFS 91

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 17/92 (18%), Positives = 33/92 (35%)

Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
           +   S  IS   P  +PG   +L    +G  +  L++         +  + ++ Q     
Sbjct: 2   SSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVG 61

Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
           +    L      ++P   S ++  L P T Y 
Sbjct: 62  EGEEWLLIHQLSNEPDARSMEVPDLNPFTCYS 93

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKK--AVVSWNPVSPQSLRGHFRGYKVQTWTEKDG 448
            +  T++  VP E P   T + + +       + + P      +     + V+      G
Sbjct: 4   GSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRP--GYDGKTSISRWLVEAQVGVVG 61

Query: 449 EGSIRELI---VNKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEI-ISFVTPEGV 503
           EG    LI    N+ ++ + EV    P +  +F R+   N     PPS+      T +  
Sbjct: 62  EGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSF-RMRQVNIVGTSPPSQPSRKIQTLQSG 120

Query: 504 PGT 506
           P +
Sbjct: 121 PSS 123

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 31/185 (16%), Positives = 51/185 (27%), Gaps = 21/185 (11%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
            L  P    EP  +   +   VT  C+       E       K        P+  V   +
Sbjct: 2   HLPKPTLWAEPGSV-ITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQ 59

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVYK-----DVYVNVLAHAPEITEAPKDEYTVDGKTV 236
             I ++    TG Y C   +      +     ++ V      P ++  P       G  V
Sbjct: 60  FPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNS-GGNV 118

Query: 237 VLTCRVFGAP---------KPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTC 287
            L C    A          + E     N +    G           +  V+ +    Y C
Sbjct: 119 TLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSS----RAIFSVGPVSPSRRWWYRC 174

Query: 288 FARNK 292
           +A + 
Sbjct: 175 YAYDS 179

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 19/166 (11%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE----TGDLKITDVAFADSGEYTCF 288
           G  V L C+  G  + +   ++ +K+       I +     G   I  + +  +G Y C+
Sbjct: 19  GSPVTLRCQ--GGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCY 76

Query: 289 ARNK-LGTAQGSGSLTVKEHTH-----ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV 342
             +   G ++ S  L +          ++ QP    V +G + T +C            +
Sbjct: 77  YGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSP-VVNSGGNVTLQC---DSQVAFDGFI 132

Query: 343 WLR--GSEPID-FESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
             +    E      S+P    S+    +V   S      Y C A  
Sbjct: 133 LCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD 178

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 28/157 (17%), Positives = 45/157 (28%), Gaps = 14/157 (8%)

Query: 51  VELFCIFGGTPLPQT-IWSKDGVPINPSDRISQGNYGK-SLIIKHVEFSDQGSYTCEVSN 108
           V L C   G    Q     ++        RI Q    K    I  + +   G Y C   +
Sbjct: 22  VTLRC--QGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS 79

Query: 109 GVGE--AKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG 163
                   S  ++L V  A   P  + +P          VT +C  S +          G
Sbjct: 80  DTAGRSESSDPLELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQC-DSQVAFDGFILCKEG 137

Query: 164 KPISQAPPNPRRKVGPN---RITIENLRKSDTGNYGC 197
           +       N +     +     ++  +  S    Y C
Sbjct: 138 EDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 174

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 42/246 (17%), Positives = 74/246 (30%), Gaps = 35/246 (14%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIH------NQKELTGGRYTILETGDLKITDVAFADSGEYT 286
            +TV+L C      + +   +H      +   L G  +  +   +  I  +    +G Y 
Sbjct: 21  EETVILQCW--SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYR 78

Query: 287 CFARNKLGTAQGSGS-----LTVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDPSLK 338
           C+        Q S       + +        ++ QP    V AG+S T  C   S  S  
Sbjct: 79  CYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGP-TVLAGESVTLSC---SSRSSY 134

Query: 339 LSIVWLR--GSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATL 396
                 R   +    F + P+   +      +  ++    G Y C         E     
Sbjct: 135 DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYE----- 187

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
                    S+  L+ V          +P  P S  G+ R        +   E  +   +
Sbjct: 188 -----WSNSSDPLLVSVTGNPSN-SWPSPTEPSSETGNPRHLHAAAEQKLISEEDLNLDL 241

Query: 457 VNKGES 462
           V +G S
Sbjct: 242 VPRGSS 247

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 13/157 (8%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVS 107
           V L C +        +  ++G   +    I +   G    +  I  +     G+Y C  S
Sbjct: 24  VILQC-WSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82

Query: 108 NGVGE----AKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
                    A S  +D+ +      P  + +P        E+VT  C +S       H  
Sbjct: 83  VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSC-SSRSSYDMYHLS 140

Query: 161 HNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGC 197
             G+   +      +  G  +        +  G Y C
Sbjct: 141 REGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRC 177

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
             L+   +  ++  + W     P+  + GY+I Y    G       E       P++TS 
Sbjct: 6   TDLQVTNVTDTSITVSW---TPPSATITGYRITYTPSNGPG-----EPKELTVPPSSTSV 57

Query: 568 KLAGLEPSTKYRIHLAGYTKAGDG 591
            + GL P  +Y + +       + 
Sbjct: 58  TITGLTPGVEYVVSVYALKDNQES 81

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 8/103 (7%)

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           L+AP++  +  V       VSW P S         GY++ T+T  +G G  +EL V    
Sbjct: 2   LDAPTDLQVTNV-TDTSITVSWTPPS-----ATITGYRI-TYTPSNGPGEPKELTVP-PS 53

Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
           ST+  +    P  +    V A       PP             
Sbjct: 54  STSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQTTGGHHHH 96

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124

 Score = 47.7 bits (113), Expect = 8e-07
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 25/122 (20%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSL--KLSIVWLRGSEP--------------IDFE 353
           +     +     G   T  C+  S   +   +S  W    E                  +
Sbjct: 2   VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 61

Query: 354 SEPRF---------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEA 404
               F             D S+ +      D+G +TC  +   D +   + +T+ V  + 
Sbjct: 62  EVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121

Query: 405 PS 406
           P+
Sbjct: 122 PT 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 72/477 (15%), Positives = 141/477 (29%), Gaps = 152/477 (31%)

Query: 109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS- 167
           G G  K+       +A           +      V  +CK       +I W++     S 
Sbjct: 160 GSG--KT------WVAL----------DVCLSYKV--QCKMDF----KIFWLNLKNCNSP 195

Query: 168 ------------QAPPN--PRRKVGPN-RITIENLRKSDTG-----NYGCNATNSLGYVY 207
                       Q  PN   R     N ++ I +++           Y     N L  V 
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCL-LVL 250

Query: 208 KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCR-------VFGAPKPEVNWIHNQKELT 260
            +V         +   A    + +  K ++ T R       +  A    ++  H+   LT
Sbjct: 251 LNVQ------NAKAWNA----FNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 261 GGRYTILETGDL--KITDVAFADSGEYTC---------FA---RNKLGTAQGSGSLTVKE 306
                  E   L  K  D    D                A   R+ L T      +   +
Sbjct: 300 PD-----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 307 HTHITD------QPED----YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP 356
            T I +      +P +    ++    + + F  +    P++ LS++W    + I  +   
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFD----RLSVFPPS-AHIPTILLSLIW---FDVIKSDVMV 406

Query: 357 RFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDA 416
              + + YSL      E    + T      +  I     L V++  E   + +++   + 
Sbjct: 407 VVNKLHKYSLV-----EKQPKESTIS----IPSI--YLELKVKLENEYALHRSIVDHYNI 455

Query: 417 KKAVVSWNPVSPQSLRG---HFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPA 473
            K   S +   P  L        G+ ++     +     R + ++          +F+  
Sbjct: 456 PKTFDSDDL-IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---------FRFLE- 504

Query: 474 SKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQP 530
                ++   + A+N   S          +  T+Q L+        FY  ++    P
Sbjct: 505 ----QKIRHDSTAWNASGS----------ILNTLQQLK--------FYKPYICDNDP 539

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 507 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS 566
            ++L    +   +  L W     P+     + I+YQ  +        E +      +  S
Sbjct: 5   PKNLVVSEVTEDSLRLSW---TAPDAAFDSFMIQYQESEKVG-----EAINLTVPGSERS 56

Query: 567 AKLAGLEPSTKYRIHLAGYTKAGDG 591
             L GL+P T+Y + + G       
Sbjct: 57  YDLTGLKPGTEYTVSIYGVKGGHRS 81

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           L AP N  + +V       +SW           F  + +Q + E +  G    L V  G 
Sbjct: 2   LPAPKNLVVSEV-TEDSLRLSWTAPD-----AAFDSFMIQ-YQESEKVGEAINLTVP-GS 53

Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
             + ++    P ++    +    G +   P     F T
Sbjct: 54  ERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLS-AEFTT 90

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 20/164 (12%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIH------NQKELTGGRYTILETGDLKITDVAFADSGEYT 286
            +TV+L C        E   +H      +   L G  +  +   +  I+ +    +G Y 
Sbjct: 22  EETVILQCW--SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79

Query: 287 CFARNKLGTAQGSGS-----LTVKEHTH---ITDQPEDYEVEAGQSATFRCNAVSDPSLK 338
           C+        Q S       + +        ++ QP    V AG++ T  C   S  S  
Sbjct: 80  CYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGP-TVLAGENVTLSC---SSRSSY 135

Query: 339 LSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCR 382
                 R  E  +         +  +            G Y C 
Sbjct: 136 DMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCF 179

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 13/157 (8%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCE-- 105
           V L C +        +  ++G+  +    I +   G    +  I  +     G+Y C   
Sbjct: 25  VILQC-WSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83

Query: 106 --VSNGVGEAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
              S     A S  +D+ +      P  + +P        E VT  C +S       H  
Sbjct: 84  VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSC-SSRSSYDMYHLS 141

Query: 161 HNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGC 197
             G+   +  P   +  G  +        +  G Y C
Sbjct: 142 REGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 7/116 (6%)

Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGE 449
                 T       P   ++   I +    ++W+P  P+   G     Y V+     +G 
Sbjct: 7   GVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDP--PKDNGGATINKYVVEMAEGSNGN 64

Query: 450 GSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
                 ++  G +     D+  P      RV   +       SE +   TP  V G
Sbjct: 65  KWE---MIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPA-VSG 116

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 8/109 (7%)

Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIP-LGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVK 545
           +   S ++ F T    PG          + S +F + W  P+   G  +  Y ++     
Sbjct: 2   SSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGS 61

Query: 546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                    +   I    T       L P   YR+ +   +  G  A S
Sbjct: 62  NG------NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVS 104

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLP 557
           +    P +    +  P  S+A  +++ +PE   GV ++ YK ++++V             
Sbjct: 2   SHMDTPSSPSIDQVEPYSSTAQ-VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 60

Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                      + GL+P T Y + LA     G G  S
Sbjct: 61  --EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEIS 95

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 19/106 (17%)

Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-----------GGR 263
            +    +    +D    DG+  V +  +  +   +  W  N +EL              R
Sbjct: 5   SSGTARLVAGLEDVQVYDGEDAVFSLDL--STIIQGTWFLNGEELKSNEPEGQVEPGALR 62

Query: 264 YTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           Y I + G    L +  V   DSG    F        Q S +LT++E
Sbjct: 63  YRIEQKGLQHRLILHAVKHQDSGALVGF---SCPGVQDSAALTIQE 105

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 44.6 bits (105), Expect = 9e-06
 Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 19/119 (15%)

Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI--------D 351
           GS        +    ED +V  G+ A F      D S  +   W    E +         
Sbjct: 1   GSSGSSGTARLVAGLEDVQVYDGEDAVFSL----DLSTIIQGTWFLNGEELKSNEPEGQV 56

Query: 352 FESEPRFVQSND---YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
                R+        + L +      DSG     +      ++  A LT+Q     PS+
Sbjct: 57  EPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPG---VQDSAALTIQES-SGPSS 111

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} Length = 231

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 17/168 (10%)

Query: 141 ETVTFECKASGLPEPE---IHWVHNGKPISQAPPNPRRKVGPN------RITIENLRKSD 191
                 C    LP      + W        +  P   ++           + +       
Sbjct: 29  LDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLS 88

Query: 192 TGNYGCNATNSLGYVYKDVYVNVLAHAPEITE----APKDEYTVDGKTVVLTCRVFG-AP 246
              + C   +    +     V               AP  E  +    V L+C V G  P
Sbjct: 89  GERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPE-ELSLSRVTLSCLVRGFRP 147

Query: 247 KP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKL 293
           +  E+ W+ + + +    +        + T       G+ T F  +K+
Sbjct: 148 RDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGD-TFFVYSKM 194

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} Length = 231

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 22/192 (11%), Positives = 45/192 (23%), Gaps = 33/192 (17%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPE---VNWIHNQKELTGGRYTILE---------TGDL 272
           P            L C V   P      V W   +         +L+         +  +
Sbjct: 20  PSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAV 79

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ----PEDYEVEAGQSATFR 328
            ++   +     +TC  +++      S S+                   E  +    T  
Sbjct: 80  PVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLS 139

Query: 329 CNAVSDPSLKLSIVWLRGSEPID-------------FESEPRFVQSNDYS----LTVTKS 371
           C         + I WLR    +                +       + +     ++V  +
Sbjct: 140 CLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETA 199

Query: 372 SELDSGQYTCRA 383
                  + C A
Sbjct: 200 KWNGGTVFACMA 211

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* Length = 239

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 28/190 (14%), Positives = 49/190 (25%), Gaps = 29/190 (15%)

Query: 221 ITEAPKDEYTVDGKTVVLTCRV----FGAPKPEVNWIHNQKELT-----------GGRYT 265
           I      +    G T  +TC V       P+   +W  +  E+                 
Sbjct: 20  IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR 79

Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH----ITDQPEDYEVEA 321
                +L I +  + +   + C   +    A    S++  E T     +       E   
Sbjct: 80  S--VSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMT 137

Query: 322 GQSATFRCNAVSDPSLK-LSIVWLRGSEPIDFESEPRFVQSND--YS----LTVTKSSEL 374
               +  C  V       +   W    +P +           D  Y     L V K +  
Sbjct: 138 QSQVSITC-MVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQ 196

Query: 375 DSGQYTCRAQ 384
               +TC   
Sbjct: 197 QGNTFTCSVL 206

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* Length = 239

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 12/114 (10%)

Query: 67  WSKDGVPIN-----PSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVSNG---VGEAKSY 116
           W  D V ++       ++ S         L I   ++ +  ++ C+V++G       KS 
Sbjct: 55  WFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSI 114

Query: 117 SIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWVHNGKPISQ 168
           S        P             +  V+  C   G  P      W  NG+P   
Sbjct: 115 SKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQEN 168

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 47.6 bits (112), Expect = 8e-06
 Identities = 29/204 (14%), Positives = 61/204 (29%), Gaps = 16/204 (7%)

Query: 388 DFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKD 447
             +E   +     P  A +    I   +      SW P    S   +   Y +  W    
Sbjct: 84  ILVEKCISPPEGDPESAVTELQCI-WHNLSYMKCSWLPGRNTSPDTN---YTLYYWHRSL 139

Query: 448 GEGSIRELIVNKGESTTTEVDKFVPASKNF----ARVLAFNGAYNGPPSEIISFVTPEGV 503
            +    E I  +G+      D       +F     +++  + A    PS  I  +T    
Sbjct: 140 EKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVK 199

Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT-------KVGPLLERL 556
           P        +   +   Y++W  P+      + Y+++  + +         +        
Sbjct: 200 PDPPHIK-NLSFHNDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPE 258

Query: 557 PYISDPTTTSAKLAGLEPSTKYRI 580
              +   T+   + G+ P T   +
Sbjct: 259 FERNVENTSCFMVPGVLPDTLNTV 282

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 48.2 bits (113), Expect = 8e-06
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL--TGGRYTILETGDLKITDVAFADS 282
            +  +   G T  L C         V W      L     +Y ++   +L I +++  DS
Sbjct: 540 YRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDS 598

Query: 283 GEYTCFARNKLGTAQGSGSLTVKEHTHITDQP 314
           G Y C +  +    +    +  K    +   P
Sbjct: 599 GVYQCLSEER-VKNKTVFQVVAKHVLEVKVVP 629

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 42.1 bits (97), Expect = 6e-04
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 4/85 (4%)

Query: 142 TVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN 201
           T   +C         + W      +    P     +G   + I NL + D+G Y C +  
Sbjct: 550 TAELKCSQKS-NLARVFWKFQNGVLKAESPK-YGLMGRKNLLIFNLSEGDSGVYQCLSEE 607

Query: 202 SLGYVYKDVYVNVLAHAPEITEAPK 226
                     V V  H  E+   PK
Sbjct: 608 R-VKNKTVFQV-VAKHVLEVKVVPK 630

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius} Length = 82

 Score = 43.5 bits (102), Expect = 8e-06
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 223 EAPKDEYTVD--GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA 280
           +A   EY V   G +V LTC +       + W  N +EL       L   D    +    
Sbjct: 2   DAENIEYKVSISGTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVE---- 55

Query: 281 DSGEYTCFARNK 292
           DSG Y C+    
Sbjct: 56  DSGYYVCYTPAS 67

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 36/241 (14%), Positives = 66/241 (27%), Gaps = 67/241 (27%)

Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWV----------------HNGKPISQAPPNPRR 175
            + +      +    C  +      IHW                 +    + ++  +P +
Sbjct: 9   TKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGK 68

Query: 176 KVGPN------RITIENLRKSDTGNYGCNATNSLGYVYKD-------------------V 210
                      R+ + NL ++D+G Y C   +   Y                        
Sbjct: 69  YDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKK 128

Query: 211 YVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIH--------------- 254
                  A ++T+A         K V L C          + W                 
Sbjct: 129 DAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGS 188

Query: 255 NQKELTGGRYTILETGD-----LKITDVAFADSGEYTCFARNKLGTAQ----GSG-SLTV 304
           +++    GRY++          L I+ +   DS +Y C     L  A     G G  +TV
Sbjct: 189 DEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTRVTV 248

Query: 305 K 305
           +
Sbjct: 249 E 249

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 34/202 (16%), Positives = 59/202 (29%), Gaps = 24/202 (11%)

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQ-TWTEKDGEGSIRELIVNKG 460
           L AP   + +   + K  ++ W+PV      G    Y V+     +    S   +  +  
Sbjct: 7   LPAPQQLS-VLSTNMK-HLLMWSPVIAP---GETVYYSVEYQGEYESLYTSHIWIPSSWC 61

Query: 461 ESTTTEV----DKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLG 516
             T        D          RV A  G+     S +      +    T   +E    G
Sbjct: 62  SLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDG 121

Query: 517 SS-AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 575
                 L+ + P+        + + Y      +  P  E    +         L  +EP 
Sbjct: 122 FHLVIELEDLGPQ------FEFLVAYW-----RREPGAEEHVKMVRSGGIPVHLETMEPG 170

Query: 576 TKYRIHLAGYTKAGD--GAESK 595
             Y +    + KA     A S+
Sbjct: 171 AAYCVKAQTFVKAIGRYSAFSQ 192

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 21/131 (16%), Positives = 33/131 (25%), Gaps = 11/131 (8%)

Query: 488 NGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT 547
           +   S          VP     LE       +  L W   +  N  +  + I+Y+     
Sbjct: 2   SSGSSGPTP-APVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYE----D 56

Query: 548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV------P 601
            +              T +     L P   Y   +      G    S+           P
Sbjct: 57  AMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEP 116

Query: 602 FKNPDNVEGRG 612
            KNP +    G
Sbjct: 117 DKNPTSGPSSG 127

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 42  KEVALRNKKVELFCIF-GGTPLPQTI---WSKDGVPIN-----PSDRISQGNYGKS--LI 90
           K+  + ++  E+ C+    +     +   W  DGV ++     P +      Y     L 
Sbjct: 258 KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLT 317

Query: 91  IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE----TVTFE 146
           + H ++ +   Y C+VSN           +S         +   +  + +E     V+  
Sbjct: 318 VLHQDWLNGKEYKCKVSNK-ALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLT 376

Query: 147 CKASGL-PEP-EIHWVHNGKPISQAPPNP 173
           C   G  P    + W  NG+P +     P
Sbjct: 377 CLVKGFYPSDIAVEWESNGQPENNYKTTP 405

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 22/200 (11%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           +P   P  F      + +     W P +   L  ++     +       E    + I   
Sbjct: 2   LPPGKPEIFKCRSP-NKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECP--DYITGG 58

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEII----SFVTPEGVPGTVQSLEAIPL 515
             S                 V A N   +    E+       V P+        ++    
Sbjct: 59  PNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPED 118

Query: 516 GSSAFYLKWVKPE----QPNGVLMGYKIKYQSVKGT--KVGPLLERLPYISDPTTTSAKL 569
                ++KW  P     +     + Y+I+ +  K    ++               T  K+
Sbjct: 119 RKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEI---------HFAGQQTEFKI 169

Query: 570 AGLEPSTKYRIHLAGYTKAG 589
             L P  KY + +      G
Sbjct: 170 LSLHPGQKYLVQVRCKPDHG 189

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} Length = 218

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 25/181 (13%)

Query: 228 EYTVDGKTVVLTCRVFG-APKP---EVNWIHNQKELTGGRYTILETGD---------LKI 274
           +  +   T  +TC V   +      +++W  N  E+   +                 L I
Sbjct: 21  DVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPI 80

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ----PEDYEVEAGQSATFRCN 330
               +    E+ C   NK   +    +++  +      Q    P   E  + +  +  C 
Sbjct: 81  QHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTC- 139

Query: 331 AVSDPSLK-LSIVWLRGSEPIDFESEPRFVQSND--YS----LTVTKSSELDSGQYTCRA 383
            V   +   +S+ W       +   +   V  +D  Y     L +  S    +  ++C  
Sbjct: 140 LVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNV 199

Query: 384 Q 384
           +
Sbjct: 200 R 200

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A Length = 475

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 38/236 (16%), Positives = 66/236 (27%), Gaps = 38/236 (16%)

Query: 67  WSKDGVPIN-----PSDRISQGNYGKS--LIIKHVEFSDQGSYTCEVSNGVGEAKSYSID 119
           WS+ G  +      PS   S   Y  S  L +   +     S TC V +    ++  ++ 
Sbjct: 163 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVP 222

Query: 120 LSVLAAPY-------------------FTVEPEFINAAEEETVTFECKASGLPEPEIHWV 160
             V + P                        P   +          C  +GL +      
Sbjct: 223 CPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTF 282

Query: 161 HNGKPISQAPPNPRRKVGPN-------RITIENLRKSDTGNYGCNATN--SLGYVYKDVY 211
                  ++      +            +       +    + C A    S   +   + 
Sbjct: 283 TWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLS 342

Query: 212 VNVLAHAPEI-TEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRY 264
            +     PE+    P  E     + V LTC   G +PK   V W+   +EL   +Y
Sbjct: 343 KSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKY 398

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* Length = 240

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 13/179 (7%)

Query: 100 GSYTCEVSNGV--GEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEI 157
           G+ +C+ ++      A       SV   P    +   I+   E T      +   PE + 
Sbjct: 1   GTKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKF 60

Query: 158 HWVHNGKPISQAPPNPRRKVGPNRI------TIENLRKSDTGNYGCNATNSLGYVYKDVY 211
           +W  +G  +  A   PR +   +        T+ +    +   Y C  +N       +  
Sbjct: 61  NWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKT 120

Query: 212 VNVL---AHAPEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT 265
           ++        P++   P     +    V LTC V G  P    V W  N +     + T
Sbjct: 121 ISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKAT 179

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* Length = 240

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 29/176 (16%)

Query: 233 GKTVVLTCRVFG-APKP---EVNWIHNQKELTGGRYTILETGD---------LKITDVAF 279
            +T  +TC V   + +    + NW  +  E+   +    E            L +    +
Sbjct: 39  SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW 98

Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDY------EVEAGQSATFRCNAVS 333
            +  EY C   NK          T+ +      +P+ Y      +       +  C  V 
Sbjct: 99  LNGKEYKCKVSNK--ALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTC-LVK 155

Query: 334 DPSLK-LSIVWLRGSEPIDFESEPRFVQSND-----YS-LTVTKSSELDSGQYTCR 382
                 +++ W    +P +       V  +D     YS LTV KS       ++C 
Sbjct: 156 GFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCS 211

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 509 SLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAK 568
           S+   P    +F L   K +     ++ Y +KY+S          +              
Sbjct: 13  SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKK-----VQGNKDHII 67

Query: 569 LAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP 601
           L  L+ +  Y + +    + G    + Y F +P
Sbjct: 68  LEHLQWTMGYEVQITAANRLGYSEPTVYEFSMP 100

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 25/201 (12%), Positives = 51/201 (25%), Gaps = 11/201 (5%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
                   P      Q  +    ++ W P   ++L G+   Y VQ       +   +E  
Sbjct: 3   QSTHESLKPQRVQ-FQSRNFH-NILQWQP--GRALTGNSSVYFVQYKIYGQRQWKNKEDC 58

Query: 457 VN-KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPL 515
              +  S     +        + RV A +       S    F            +    +
Sbjct: 59  WGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQV 118

Query: 516 GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLL-----ERLPYISDPTTTSAKLA 570
             S   +    P  P        +  +          +     E+   + +    + ++ 
Sbjct: 119 NGSL-LVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIE 177

Query: 571 GLEPSTKYRIHLAGYTKAGDG 591
            L P + Y +    Y    D 
Sbjct: 178 ALTPHSSYCVVAEIYQPMLDR 198

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... Length = 207

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 29/177 (16%)

Query: 233 GKTVVLTCRVFG-APKPE---VNWIHNQKELTGGRYTILETGD---------LKITDVAF 279
            +T  +TC V   + +      NW  +  E+   +    E            L +    +
Sbjct: 18  SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW 77

Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDY------EVEAGQSATFRCNAVS 333
            +  EY C   NK          T+ +      +P+ Y      +       +  C  V 
Sbjct: 78  LNGKEYKCKVSNK--ALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTC-LVK 134

Query: 334 DPSLK-LSIVWLRGSEPIDFE--SEPRFVQSNDYS----LTVTKSSELDSGQYTCRA 383
                 +++ W    +P +    + P       +     LTV KS       ++C  
Sbjct: 135 GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV 191

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... Length = 207

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 140 EETVTFECKASGL----PEPEIHWVHNGKPISQAPPNPRRKVGPNR------ITIENLRK 189
             T    C    +    PE + +W  +G  +  A   PR +   +       +T+ +   
Sbjct: 18  SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW 77

Query: 190 SDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI----TEAPKDEYTVDGKTVVLTCRVFG- 244
            +   Y C  +N       +  ++     P      T  P  +  +    V LTC V G 
Sbjct: 78  LNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGF 136

Query: 245 APKP-EVNWIHNQKELTGGRYT 265
            P    V W  N +     + T
Sbjct: 137 YPSDIAVEWESNGQPENNYKTT 158

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 14/153 (9%)

Query: 358 FVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAK 417
           F+++  + L    +  +  G+ +    T          LT  V  EAP + +++    A 
Sbjct: 77  FIETKKFLLIGKSNICVKVGEKS---LTCKKI-----DLTTIVKPEAPFDLSVVYREGAN 128

Query: 418 KAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNF 477
             VV++N    Q        + V    EKD   +    +       T    K  PA+   
Sbjct: 129 DFVVTFNTSHLQKKYVKVLMHDVAYRQEKD--ENKWTHVNLSSTKLTLLQRKLQPAAMYE 186

Query: 478 ARVLA-FNGAYNGPPSE---IISFVTPEGVPGT 506
            +V +  +  + G  SE      F TPE    +
Sbjct: 187 IKVRSIPDHYFKGFWSEWSPSYYFRTPEINNSS 219

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 24/104 (23%)

Query: 299 SGSLTVKEHTHITDQPEDYEVEAGQSATFRCN-AVSDPSLKL-SIVWLRGSEP------- 349
            G+L V        QP +     G SA   C+   S   L + S+ W R           
Sbjct: 6   QGALWVS-------QPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRN 58

Query: 350 --------IDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQT 385
                   +   +  RF+  +   L +      D+  Y CR + 
Sbjct: 59  GTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEV 102

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 46.1 bits (108), Expect = 3e-05
 Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 12/133 (9%)

Query: 68  SKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY 127
           +      +  +         +  +  V+   +G+Y   +     + +  +++L+V   P 
Sbjct: 235 AVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQV-TLELAVYKPPK 293

Query: 128 FTVEPE--FINAAEEETVTFECKASG---LPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
            ++ P      A  E      C  S        E+ W   G P  ++           + 
Sbjct: 294 VSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQ------KAEGQR 347

Query: 183 TIENLRKSDTGNY 195
            +  LR    G+ 
Sbjct: 348 WLSALRHHSDGSV 360

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 19/130 (14%), Positives = 27/130 (20%), Gaps = 17/130 (13%)

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE--HTHITDQPEDYEVEAGQSATFRC 329
             +  V     G Y           Q +  L V +     +                  C
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLC 315

Query: 330 NAVS-DPSLKLSIVWLRGSEPIDFESEP-------RFVQSND--YS----LTVTKSSELD 375
                 PS  L + W     P     +             +D   S    L     +   
Sbjct: 316 LVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQ 375

Query: 376 SGQ-YTCRAQ 384
            G  Y CR  
Sbjct: 376 HGARYACRIH 385

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK-------VGPLLE 554
           G            L   +  L+W+ P      ++ +K++Y+ V   K         P  +
Sbjct: 1   GSTYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60

Query: 555 RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                    + +A +  L+P   YR  +       D  ES
Sbjct: 61  PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKES 100

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} Length = 253

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 24/166 (14%), Positives = 41/166 (24%), Gaps = 32/166 (19%)

Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWV-------------HNGKPISQAPPNPRRKVG 178
           P +      + V   C       P + W                     +    P     
Sbjct: 8   PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYL 67

Query: 179 PNR-----ITIENLRKSDTGNYGCNATNSLGYVYKDVY------VNVLAHAPEITE---- 223
             R     + ++    S      C ++         +Y      + VL     +      
Sbjct: 68  ATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVA 127

Query: 224 --APKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYT 265
              P +      +   L C   G  P   E++W  N KE+  G  T
Sbjct: 128 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVST 173

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 12/119 (10%)

Query: 391 EAQATLTVQVPLEAPSNFTL-IQVIDAKKAVVSWNPVSPQSLRGHF--RGYKVQTWTEKD 447
              A L V+    AP +    +  ++ +   ++W    P    G+     Y ++   E +
Sbjct: 7   GRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTK--PFD--GNSPLIRYILEMS-ENN 61

Query: 448 GEGSIRELIVNKGESTTTEVDKFVPASK-NFARVLAFNGAYNGPPSEIISFV-TPEGVP 504
              ++    V+  ++T+  V   VPA    F R+ A N    G  S+    V  PE  P
Sbjct: 62  APWTVLLASVD-PKATSVTVKGLVPARSYQF-RLCAVNDVGKGQFSKDTERVSLPESGP 118

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 15/112 (13%), Positives = 28/112 (25%), Gaps = 17/112 (15%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGK-----------PISQAPPNPRR 175
                  +       VT     S     + + W +                 ++    R 
Sbjct: 7   GQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRV 66

Query: 176 KVGPN--RITIENLRKSDTGNYGCNATNSLGYV-YKDVYVNVLAH--APEIT 222
           ++ P    + I  ++K D   Y        G      + + VL     P I 
Sbjct: 67  RLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIK 118

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 67  WSKDGVPINPS---DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV- 122
           W         S    R+       +L I  V+  D  +Y   V    G  + + I L V 
Sbjct: 50  WDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109

Query: 123 --LAAPYFTVE 131
             +  P   +E
Sbjct: 110 DPVPKPVIKIE 120

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 15/112 (13%)

Query: 308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE--------SEPRF- 358
           +          V +G + T   +     + K  + W    +    E         E +F 
Sbjct: 5   SSGQGHLVHMTVVSGSNVTLNISESLPENYK-QLTWFYTFDQKIVEWDSRKSKYFESKFK 63

Query: 359 ----VQSNDYSLTVTKSSELDSGQYTCRA-QTELDFIEAQATLTVQVPLEAP 405
               +     +L ++K  + D+  Y  R  +   +  E +  L V  P+  P
Sbjct: 64  GRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
            L  P    L+ V   +  ++ W+P  P+ +     GY ++      G   +   +   G
Sbjct: 7   GLSPPRG--LVAVRTPRGVLLHWDP--PELVPKRLDGYVLEGRQGSQGWEVLDPAV--AG 60

Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
             T   V   +       R++AF G++   PS   +  T     
Sbjct: 61  TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 5/78 (6%)

Query: 517 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 576
                L W  PE     L GY ++ +           E L      T T   + GL    
Sbjct: 20  PRGVLLHWDPPELVPKRLDGYVLEGRQGSQG-----WEVLDPAVAGTETELLVPGLIKDV 74

Query: 577 KYRIHLAGYTKAGDGAES 594
            Y   L  +  +     S
Sbjct: 75  LYEFRLVAFAGSFVSDPS 92

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 18/155 (11%)

Query: 36  QYVTRKKEVALRNKKVELFCIFGG-TPLPQTI---WSKDGVPIN-----PSDRISQGNY- 85
            +  + K+  L     ++ C+    +     +   W  D V ++     P +      + 
Sbjct: 233 IFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFR 292

Query: 86  -GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE--- 141
              +L I H ++ +   + C V++           +S         +   I   +E+   
Sbjct: 293 VVSALPIMHQDWLNGKEFKCRVNSA-AFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAK 351

Query: 142 -TVTFECKASGL-PEP-EIHWVHNGKPISQAPPNP 173
             V+  C  +   PE   + W  +G+         
Sbjct: 352 DKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQ 386

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 51/305 (16%), Positives = 86/305 (28%), Gaps = 69/305 (22%)

Query: 141 ETVTFECKASG--LPEPEIHWV--HNGKPI----------SQAPPNPRRKVGPNRITI-- 184
            +V   CKASG       IHW+    G+ +               N R K   ++ T+  
Sbjct: 15  ASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFK---DKATLTR 71

Query: 185 -----------ENLRKSDTGNYGCNATNSLGYVYKDVYVNV---LAHAPEITEAPKDEYT 230
                       +L   D+  Y C     + Y  +   V V       P +         
Sbjct: 72  DRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAA 131

Query: 231 VDGKTVVLTCRVFG-APKP-EVNWIHNQ---------KELTGGRYTILETGDLKITDVAF 279
                V L C V G  P+P  V W               L    YT+  +  + +     
Sbjct: 132 QTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVPSSPR 189

Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKEHT--------------HITDQPEDYEVEAGQSA 325
             S   TC   +   + +    +  ++                 I        +    + 
Sbjct: 190 -PSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTP 248

Query: 326 TFRCNAV--SDPSLKLSIVWLR-GSEPIDFESEPRFVQSND-YS----LTVTKSSELDSG 377
              C  V  S    ++   W     E    +++PR  Q N  +     L +     L+  
Sbjct: 249 KVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGK 308

Query: 378 QYTCR 382
           ++ CR
Sbjct: 309 EFKCR 313

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 18/149 (12%)

Query: 42  KEVALRNKKVELFCIFGG-TPLPQTI---WSKDGVPIN-----PSDRISQGNYGKS--LI 90
           K+V + +    + C+    +     +   W  + V ++                    L 
Sbjct: 249 KDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALP 308

Query: 91  IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEE----TVTFE 146
           I+H ++     + C+V+N           +S         +   +   EEE     VT  
Sbjct: 309 IQHQDWMSGKEFKCKVNNK-DLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLT 367

Query: 147 CKASGL-PEP-EIHWVHNGKPISQAPPNP 173
           C  +   PE   + W +NGK         
Sbjct: 368 CMVTDFMPEDIYVEWTNNGKTELNYKNTE 396

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 19/195 (9%), Positives = 54/195 (27%), Gaps = 17/195 (8%)

Query: 389 FIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDG 448
           F+    T ++ V            V + +    +W   S            +  W +   
Sbjct: 24  FLTTMPTDSLSVSTLPLPEVQCF-VFNVEYMNCTWQSSSE----PQPTNLTLHYWYKNSD 78

Query: 449 EGSIRE---LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
              +++    + ++  ++  ++ K          V   +       +  +  +    +P 
Sbjct: 79  NDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPW 138

Query: 506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 565
             ++L    L  S   L W      + +   + ++Y++                S     
Sbjct: 139 APENLTLHKLSESQLELNWNNRFLNHCLE--HLVQYRTDWDHSW-------TEQSVDYRH 189

Query: 566 SAKLAGLEPSTKYRI 580
              L  ++   +Y  
Sbjct: 190 KFSLPSVDGQKRYTF 204

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 23/103 (22%), Positives = 30/103 (29%), Gaps = 9/103 (8%)

Query: 404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHF--RGYKVQTWTEKDGEGSIRELIVNKGE 461
                 L     AK+  + W P  P    G      Y V+    +  E       V +G 
Sbjct: 11  PCLPPRLQGRPKAKEIQLRWGP--PLV-DGGSPISCYSVEMSPIEKDEPRE----VYQGS 63

Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
                V   +P      R+ A N    GP SE     T  G  
Sbjct: 64  EVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 25/200 (12%), Positives = 57/200 (28%), Gaps = 30/200 (15%)

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           +  P N   +  ++ K  ++ W   +    +  F    +     +D              
Sbjct: 2   VPPPENVR-MNSVNFK-NILQWESPAFAKGQLTFTAQYLSYRIFQDKCMQTTL------- 52

Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFY 521
            T  +         +  RV A     +    +I +F   +        ++   L     +
Sbjct: 53  -TECDFSSLSKYGDHTLRVRAEFADEHSDWVQI-TFSPVDDTIIGPPGMQVEVLADC-LH 109

Query: 522 LKWVKPEQPNGVLMG----------YKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAG 571
           ++++ P+  N               Y ++Y      +         +   P      L  
Sbjct: 110 MRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEK--------FQITPQYDFEVLRN 161

Query: 572 LEPSTKYRIHLAGYTKAGDG 591
           LEP T Y + + G+    + 
Sbjct: 162 LEPWTTYCVQVRGFLPDRNK 181

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 17/161 (10%), Positives = 45/161 (27%), Gaps = 16/161 (9%)

Query: 349 PIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNF 408
            +      +    +  +L V     +       +                 + L AP + 
Sbjct: 63  ILGAPDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFK----------PFENLRLMAPISL 112

Query: 409 TLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVD 468
            ++ V +  +  +SW              ++ +T +          L + + +     ++
Sbjct: 113 QVVHV-ETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ-EWICLE 170

Query: 469 KFVPASKNFARVLA-FNGAYNG---PPSEIISFVTPEGVPG 505
              P ++   +V             P S+ ++F T     G
Sbjct: 171 TLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAALG 211

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 8/109 (7%)

Query: 488 NGPPSEIISF-VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVK 545
           +   S +    V P   P      +       +  L W   ++          +++   +
Sbjct: 2   SSGSSGMEPHKVVPLSKPHPPVVGKV---THHSIELYWDLEQKEKRQGPQEQWLRFSIEE 58

Query: 546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                        I     T   + GLEP T Y+  L   + +G+   S
Sbjct: 59  EDPKMHSYGV---IYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYS 104

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGT 547
              S           P             ++ Y+ W  P    G  +  ++++Y+ +K  
Sbjct: 3   SGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKV 61

Query: 548 KV-GPLLERLPYISDPTTTSAKLAGLEPSTKYR 579
                    +P    P+  S ++ GLE    Y+
Sbjct: 62  GDWILATSAIP----PSRLSVEITGLEKGISYK 90

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 35/197 (17%), Positives = 59/197 (29%), Gaps = 11/197 (5%)

Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN-K 459
            L  P+N T    I+ K  V+ W P  P+ L+G    Y VQ +     +   +    N  
Sbjct: 8   GLPKPANIT-FLSINMK-NVLQWTP--PEGLQGVKVTYTVQYFIYGQKKWLNKSECRNIN 63

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSA 519
                   +      + +ARV A  G      +E   F            +       S 
Sbjct: 64  RTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKS- 122

Query: 520 FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP-----YISDPTTTSAKLAGLEP 574
             +    PE+         +  Q +       +          +    T  +  L  LEP
Sbjct: 123 ISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEP 182

Query: 575 STKYRIHLAGYTKAGDG 591
           +T Y +H+  +      
Sbjct: 183 NTLYCVHVESFVPGPPR 199

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 42.3 bits (98), Expect = 5e-04
 Identities = 15/76 (19%), Positives = 19/76 (25%), Gaps = 5/76 (6%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-TI 184
                  + ++ A        C           W H                 PN I  I
Sbjct: 501 KPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVE---QSCEPGHQSPNCILFI 556

Query: 185 ENLRKSDTGNYGCNAT 200
           ENL     G+Y C A 
Sbjct: 557 ENLTAQQYGHYFCEAQ 572

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 41.9 bits (97), Expect = 7e-04
 Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 2/77 (2%)

Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-RYTILETGDLKIT 275
           +        +           L+C +        +W H +                L I 
Sbjct: 499 NPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCILFIE 557

Query: 276 DVAFADSGEYTCFARNK 292
           ++     G Y C A+  
Sbjct: 558 NLTAQQYGHYFCEAQEG 574

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} Length = 376

 Score = 41.9 bits (97), Expect = 6e-04
 Identities = 34/263 (12%), Positives = 68/263 (25%), Gaps = 21/263 (7%)

Query: 141 ETVTFECKASGLP--EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCN 198
           ++VTF CK +        +    N        P                           
Sbjct: 93  DSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPR 152

Query: 199 ATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE 258
                  +     V+ +   P   +           T V+       P+ + +W  +  E
Sbjct: 153 DCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVE 212

Query: 259 LTGGR---------YTILETGDLKITDVAFADSGEYTCFARNKL----GTAQGSGSLTVK 305
           +   +          T     +L I    + +  E+ C   +           S +    
Sbjct: 213 VHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRP 272

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID--FESEPRFVQSND 363
           +   +   P   E  A    +  C         +++ W    +P +    ++P    +  
Sbjct: 273 KAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNES 332

Query: 364 YS----LTVTKSSELDSGQYTCR 382
           Y     L V KS+      +TC 
Sbjct: 333 YFVYSKLNVQKSNWEAGNTFTCS 355

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 Length = 207

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 16/125 (12%)

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSG------------SLTVKEHTHITDQPEDYEV 319
           L I D    DSG Y C A +    ++G               +TV+  +    +P  + +
Sbjct: 73  LHIRDAQLEDSGTYFC-AADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIM 131

Query: 320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQY 379
           +        C        +++I      + ++F+       S  YS  V      DS   
Sbjct: 132 K--NGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYS-AVKLGQYGDSNSV 188

Query: 380 TCRAQ 384
           TC  Q
Sbjct: 189 TCSVQ 193

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 9/113 (7%)

Query: 394 ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEGSI 452
            +     P   P++  L +        + W+   P          Y ++   E  G G  
Sbjct: 1   GSSGSSGP-SMPASPVLTKA-GITWLSLQWSK--PSGTPSDEGISYILEMEEETSGYGF- 55

Query: 453 RELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT-PEGVP 504
                  GE     V     ++K   +V+A+N      PSE++ F T P+  P
Sbjct: 56  --KPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGP 106

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 7/98 (7%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLP 557
           +    P    S      G +   L+W KP        + Y ++ +               
Sbjct: 3   SGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSG------YGFK 56

Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
              D    +  +  L  STKY+  +  Y   G    S+
Sbjct: 57  PKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSE 94

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 88  SLIIKHVEFSDQGSYTCEVSN----GVGEAKSYSIDLSVLA 124
           +L + +++  D+G Y C + +    G+      + +LSVLA
Sbjct: 70  TLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVLA 110

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 16/104 (15%), Positives = 26/104 (25%), Gaps = 9/104 (8%)

Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
               ++L    +     +L W    QP+     Y ++          P  E         
Sbjct: 9   LPPPRALTLAAVTPRTVHLTW----QPSAGATHYLVRCSPA-----SPKGEEEEREVQVG 59

Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDN 607
                L GLEP   Y + +                  P   P +
Sbjct: 60  RPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGPSS 103

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 15/162 (9%), Positives = 45/162 (27%), Gaps = 16/162 (9%)

Query: 422 SWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRE---LIVNKGESTTTEVDKFVPASKNFA 478
           +W   S            +  W +      +++    + ++  ++  ++ K         
Sbjct: 18  TWQSSSEPQPTN----LTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTF 73

Query: 479 RVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYK 538
            V   +       +  +  +    +P   ++L    L  S   L W      + +   + 
Sbjct: 74  VVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLE--HL 131

Query: 539 IKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 580
           ++Y++                S        L  ++   +Y  
Sbjct: 132 VQYRTDWDHSW-------TEQSVDYRHKFSLPSVDGQKRYTF 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	745
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	100.0
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	100.0
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	100.0
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.98
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.98
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.98
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.98
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.98
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.98
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.97
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.97
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.97
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.97
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.97
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.97
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.97
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.97
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.97
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.97
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.96
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.96
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.96
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.96
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.96
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.96
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.96
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.96
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.96
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.96
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.96
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.96
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.96
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.96
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.95
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.95
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.95
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.95
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.95
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.94
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.94
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.94
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.94
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.94
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.94
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.94
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.93
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.93
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.93
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.93
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.93
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.93
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.93
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.93
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.93
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.93
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.93
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.93
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.92
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.92
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.92
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.92
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.92
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.92
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.92
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.91
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.91
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.91
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.91
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.91
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.91
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.91
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.91
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.91
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.91
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.91
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.9
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.9
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.9
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.9
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.9
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.9
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.9
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.9
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.9
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.9
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.9
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.9
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.9
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.9
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.9
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.89
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.89
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.89
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.89
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.89
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.89
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.89
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.89
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.89
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.89
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.89
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.89
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.88
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.88
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.88
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.88
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.88
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.88
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.88
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.88
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.88
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.88
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.88
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.88
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.88
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.88
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.88
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.88
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.88
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.88
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.87
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.87
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.87
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.87
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.87
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.87
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.87
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.87
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.87
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.87
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.87
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.86
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.86
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.86
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.86
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.86
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.86
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.86
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.86
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.86
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.86
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.86
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.86
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.86
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.86
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.85
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.85
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.85
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.85
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.85
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.85
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.85
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.85
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.84
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.84
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.84
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.84
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.84
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.84
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.84
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.84
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.84
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.84
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.84
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.84
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.84
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.84
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.84
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.84
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.83
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.83
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.83
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.83
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.83
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.83
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.82
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.82
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.82
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.82
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.82
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.82
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.82
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.82
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.82
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.82
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.81
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.81
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.81
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.81
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.81
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.81
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.81
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.81
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.81
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.81
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.81
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.81
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.8
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.8
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.8
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.8
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.8
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.8
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.8
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.8
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.8
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.8
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.8
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.79
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.79
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.79
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.79
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.79
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.79
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.79
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.78
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.78
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.78
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.78
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.78
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.78
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.78
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.78
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.78
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.77
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.77
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.77
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.77
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.77
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.77
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.77
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.77
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.77
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.77
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.77
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.77
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.77
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.77
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.77
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.77
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.77
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.77
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.77
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.76
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.76
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.76
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.76
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.76
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.76
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.76
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.76
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.75
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.75
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.75
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.75
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.75
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.75
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.74
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.74
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.74
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.74
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.74
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.74
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.74
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.74
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.73
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.73
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.73
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.73
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.73
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.73
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.73
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.73
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.73
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.72
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.72
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.72
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.72
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.72
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.72
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.72
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.72
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.72
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.72
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.72
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.72
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.71
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.71
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.71
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.71
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.71
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.71
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.71
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.71
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.71
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.71
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.71
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.7
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.7
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.7
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.7
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.7
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.7
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.7
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.7
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.7
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.69
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.69
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.69
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.69
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.69
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.69
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.69
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.69
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.69
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.69
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.69
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.69
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.69
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.68
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.68
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.68
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.68
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.68
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.67
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.67
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.67
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.67
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.67
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.67
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.67
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.66
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.66
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.66
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.66
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.66
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.66
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.66
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.66
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	99.65
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.65
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	99.65
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.65
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.65
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	99.65
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	99.65
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.64
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.64
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	99.64
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.64
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.64
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.63
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.63
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	99.63
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.63
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.63
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.63
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.63
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.63
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.63
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.63
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.62
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.62
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.62
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.62
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.62
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.62
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.62
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.62
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.61
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.61
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.61
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.61
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.61
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.61
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.6
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.6
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.6
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	99.6
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.6
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.6
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.6
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.6
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.6
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.6
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.6
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.59
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.59
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	99.59
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.59
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	99.59
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.59
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.59
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	99.59
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	99.58
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.58
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.58
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.58
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.57
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.57
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.57
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.57
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.57
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.56
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	99.56
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.56
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.56
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.56
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.56
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.55
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.55
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.55
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.55
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.54
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.54
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.54
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.54
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.54
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.53
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.53
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.53
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.53
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.53
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.53
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.53
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.52
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.52
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.52
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.52
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.52
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.52
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.51
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.51
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.51

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=6.1e-48  Score=421.63  Aligned_cols=451  Identities=22%  Similarity=0.364  Sum_probs=353.0

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .|+.|+..+++..+.+|++++|.|.+.|.|.+.|+|+|||..|....++.+.  ....+|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (570)
T 3b43_A            4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENS   83 (570)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeC
Confidence            3566778889999999999999999999999999999999999877666543  33468999999999999999999999


Q ss_pred             CeeeEEEEEEEEEE---ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce-eecCceEEEc
Q psy11701        110 VGEAKSYSIDLSVL---AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-KVGPNRITIE  185 (745)
Q Consensus       110 ~g~~~~~~~~l~V~---~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~L~i~  185 (745)
                      .|... ....|.|.   .+|.|...+.+..+.+|+++.|.|.+.|.|.+.++|+|||..+......... ......|.|.
T Consensus        84 ~g~~~-~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~  162 (570)
T 3b43_A           84 VGAVA-SSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQIL  162 (570)
T ss_dssp             TEEEE-EEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEES
T ss_pred             CceEE-EEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEEC
Confidence            98876 44556664   3677777788888899999999999999999999999999988743321111 1234689999


Q ss_pred             cCCCCCCEEEEEEEEeCCceEEEEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC-c
Q psy11701        186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG-G  262 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~  262 (745)
                      ++..+|+|.|+|.|.|..|.....+.+.|..  .+|.+...|....+.+|+.++|.|.+.+.|.+.+.|++++..+.. .
T Consensus       163 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~  242 (570)
T 3b43_A          163 QTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG  242 (570)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTS
T ss_pred             cCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCC
Confidence            9999999999999999999888777777653  477888888888889999999999999999999999999998753 3


Q ss_pred             eEEEe---ecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCC-cEEEecCCeEEEEEEEEecCCCC
Q psy11701        263 RYTIL---ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE-DYEVEAGQSATFRCNAVSDPSLK  338 (745)
Q Consensus       263 ~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~-~~~~~~g~~~~l~C~~~~~~~~~  338 (745)
                      ++...   ..+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|.+...+. ...+..|+.+.|.|.+.+.|.  
T Consensus       243 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~--  320 (570)
T 3b43_A          243 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE--  320 (570)
T ss_dssp             SEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSS--
T ss_pred             cEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCC--
Confidence            43332   234799999999999999999999999999999999998887665543 345688999999999999876  


Q ss_pred             cEEEEeeCCeeccCCCCCeEEE-cCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCC---CCCCceeEEee
Q psy11701        339 LSIVWLRGSEPIDFESEPRFVQ-SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLE---APSNFTLIQVI  414 (745)
Q Consensus       339 ~~i~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~---~P~~~~~~~~~  414 (745)
                      +.+.|++++..+......+... .....|.|.++...|.|.|+|.|.|..|.....+.|.|..||.   .|..+.+   .
T Consensus       321 p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~---~  397 (570)
T 3b43_A          321 IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVET---L  397 (570)
T ss_dssp             CEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEE---C
T ss_pred             CEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceee---c
Confidence            7899999999887443333322 3346799999999999999999999999999999999987763   3433332   5


Q ss_pred             cCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCC---CceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCC
Q psy11701        415 DAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGE---GSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPP  491 (745)
Q Consensus       415 ~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~  491 (745)
                      .+..+.|.|.....+.       ..+ .|.+++..   .....+.. ......+.|.++...+...|.|.|.|..|....
T Consensus       398 ~G~~v~l~C~~~g~P~-------p~v-~W~k~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  468 (570)
T 3b43_A          398 KGADVHLECELQGTPP-------FQV-SWHKDKRELRSGKKYKIMS-ENFLTSIHILNVDSADIGEYQCKASNDVGSDTC  468 (570)
T ss_dssp             TTCCEEEEEEEESSSS-------CCC-EEEETTEECCSSSSEEEEE-ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCCEEEEEEEEecCCC-------CEE-EEEECCEECcCCCCEEEEE-cCCEEEEEECCCChhhCEEEEEEEEECCCeEEE
Confidence            6778899998742221       112 23332211   11112222 334467889999999999999999999997654


Q ss_pred             CcceEE
Q psy11701        492 SEIISF  497 (745)
Q Consensus       492 S~~~~~  497 (745)
                      +..+.+
T Consensus       469 ~~~l~v  474 (570)
T 3b43_A          469 VGSITL  474 (570)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            433333

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=9e-47  Score=412.39  Aligned_cols=446  Identities=21%  Similarity=0.352  Sum_probs=350.1

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe--ccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ--GNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .|+.+...+.+..+.+|++++|.|.+.|.|.++|.|+|||+.|....++..  ......|.|.+++.+|+|.|+|.|.|.
T Consensus       100 ~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  179 (570)
T 3b43_A          100 LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNP  179 (570)
T ss_dssp             CCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeC
Confidence            355666777888899999999999999999999999999999987666542  334468999999999999999999999


Q ss_pred             CeeeEEEEEEEEEE---ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEc
Q psy11701        110 VGEAKSYSIDLSVL---AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIE  185 (745)
Q Consensus       110 ~g~~~~~~~~l~V~---~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~  185 (745)
                      .|... ....|.|.   .+|.+...|....+.+|+++.|.|.+.|.|.+.++|+|+|..+........... ....|.|.
T Consensus       180 ~g~~~-~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~  258 (570)
T 3b43_A          180 LGTAS-SSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL  258 (570)
T ss_dssp             TEEEE-EEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEES
T ss_pred             CcEEE-EEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEc
Confidence            88765 45666664   467888888888899999999999999999999999999999864322111112 23689999


Q ss_pred             cCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCC-ceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCc-e
Q psy11701        186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPK-DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-R  263 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~-~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~  263 (745)
                      ++..+|+|.|+|.|.|..|.....+.|.|.. +|.+...+. ...+.+|+.+.|.|.+.|.|.+.+.|++++..+... +
T Consensus       259 ~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~  337 (570)
T 3b43_A          259 KVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK  337 (570)
T ss_dssp             SBCGGGCEEEEEEEEETTEEEEEEEEECCBC-CCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSS
T ss_pred             ccCcccCEEEEEEEECCCCcEEEEEEEEeec-CCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCc
Confidence            9999999999999999999998889998875 666665543 345789999999999999999999999999987543 3


Q ss_pred             EEEe---ecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecCCCCcE
Q psy11701        264 YTIL---ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLS  340 (745)
Q Consensus       264 ~~~~---~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~  340 (745)
                      +...   ..+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+...|....+..|+.+.|.|.+.+.|.  +.
T Consensus       338 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~  415 (570)
T 3b43_A          338 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPP--FQ  415 (570)
T ss_dssp             EEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSS--CC
T ss_pred             EEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCC--CE
Confidence            3322   224699999999999999999999999999999999999999988888888899999999999999886  67


Q ss_pred             EEEeeCCeeccCCCCCeEEEc-CCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCCC---CCCceeEEeecC
Q psy11701        341 IVWLRGSEPIDFESEPRFVQS-NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEA---PSNFTLIQVIDA  416 (745)
Q Consensus       341 i~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~---P~~~~~~~~~~~  416 (745)
                      +.|++++..+.......+... ....|.|.++...|.|.|+|.|.|..|.....+.|.+..||..   |.++.+   ..+
T Consensus       416 v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~---~~g  492 (570)
T 3b43_A          416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDIST---VVG  492 (570)
T ss_dssp             CEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCC---BTT
T ss_pred             EEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCcee---cCC
Confidence            999999998864333222222 2257999999999999999999999999998899988876542   223222   456


Q ss_pred             ceeEEEEEeCCCCCcceeeeeEEEEEEeccCCC----CceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCC
Q psy11701        417 KKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGE----GSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPS  492 (745)
Q Consensus       417 ~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S  492 (745)
                      ..+.|.|.......       -.| .|.++++.    .....+.. ..+...+.|..+.+.+...|.|.|.|..|....+
T Consensus       493 ~~~~l~c~~~g~p~-------~~v-~W~k~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~  563 (570)
T 3b43_A          493 EEVQLQATIEGAEP-------ISV-AWFKDKGEIVRESDNIWISY-SENIATLQFSRAEPANAGKYTCQIKNEAGTQECF  563 (570)
T ss_dssp             CCEEEEEEEESCSS-------CCC-EEEETTEECCCCTTTEEECC-CSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEE
T ss_pred             CeEEEEEEEecCCC-------CEE-EEEeCCeEeccCCCeEEEEE-CCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEE
Confidence            77888887632211       112 23332211    11111222 3455688899999999999999999999976544


Q ss_pred             c
Q psy11701        493 E  493 (745)
Q Consensus       493 ~  493 (745)
                      .
T Consensus       564 a  564 (570)
T 3b43_A          564 A  564 (570)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-47  Score=429.17  Aligned_cols=575  Identities=15%  Similarity=0.214  Sum_probs=323.7

Q ss_pred             CCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccC-CCCCCEEEEEEEEeCCceEEEEEEEEEee--
Q psy11701        140 EETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL-RKSDTGNYGCNATNSLGYVYKDVYVNVLA--  216 (745)
Q Consensus       140 G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~--  216 (745)
                      +.++.|.|.+.|.|.+.+.|.|+|..+...        ....+.|..+ ..+..+.|+|.+.+..|..... .+.+..  
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~--------~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~~~~  161 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTW--------NRAELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVLGHP  161 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSC--------EEEEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEESSC
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCce--------eEEEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEeeecc
Confidence            468999999999999999999999876421        1234556554 2333478999877777764432 222222  


Q ss_pred             --cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEE-Ee--eCCEEccCceEEEee----cCcEEEcccCCCCCEEEEE
Q psy11701        217 --HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN-WI--HNQKELTGGRYTILE----TGDLKITDVAFADSGEYTC  287 (745)
Q Consensus       217 --~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~-W~--~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C  287 (745)
                        .+|.+. .+....+.+|++++|.|.+.|.|.+.+. |+  +++..+.........    .+.|.|.++...|.|.|+|
T Consensus       162 ~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c  240 (731)
T 2v5y_A          162 CTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC  240 (731)
T ss_dssp             CSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEE
T ss_pred             cccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEE
Confidence              356666 5667889999999999999999998887 88  677665433322221    2579999999999999999


Q ss_pred             EEEeCCce-EEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEe----cCCCCcEEEEeeCCeeccCCCCCeEEEcC
Q psy11701        288 FARNKLGT-AQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVS----DPSLKLSIVWLRGSEPIDFESEPRFVQSN  362 (745)
Q Consensus       288 ~~~n~~g~-~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~----~~~~~~~i~W~~~~~~~~~~~~~~~~~~~  362 (745)
                      .|.|..|. .+..+.|.|..+|.++..|....+ ....+.|.|....    .+...+.+.|...+..     ........
T Consensus       241 ~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~-~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~-----~~~~~~~~  314 (731)
T 2v5y_A          241 MIRTEGGVGISNYAELVVKEPPVPIAPPQLASV-GATYLWIQLNANSINGDGPIVAREVEYCTASGS-----WNDRQPVD  314 (731)
T ss_dssp             EEEETTEEEECCCEEEEEECCCCBSSCCEEEEE-CSSCEEEECCCSSBSSCSCCCEEEEEEEESSSS-----CEEEEECC
T ss_pred             EEECCCCCcceeeEEEEEecCCCCCCCcceecc-CCceEEEEeCCcccCCCCccEEEEEEEEECCCC-----ceEEeccC
Confidence            99999998 667788999888876666654443 4578889987643    2233357788765321     11223334


Q ss_pred             CeEEEEecCCCCCCEEEEEEEE--eCCceEEEEEEEEEe----ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeee
Q psy11701        363 DYSLTVTKSSELDSGQYTCRAQ--TELDFIEAQATLTVQ----VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFR  436 (745)
Q Consensus       363 ~~~l~i~~~~~~~~g~y~c~a~--n~~g~~~~~~~l~v~----~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~  436 (745)
                      ...+.|.++...+.|.|+|.|.  |..|.+..+..+.+.    .|+.+|.++.+.. .+.+++.|+|+++.....++.+.
T Consensus       315 ~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~-~~~~sv~l~W~~p~~~~~~~~~~  393 (731)
T 2v5y_A          315 STSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVE-VKSRQITIRWEPFGYNVTRCHSY  393 (731)
T ss_dssp             SSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEE-ECSSCEEEEEECCCHHHHCSSSC
T ss_pred             cceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEe-ccCCeEEEEEECCCcccccceee
Confidence            5689999999999999999999  999976644334443    4567888888877 88999999999965444456788


Q ss_pred             eEEEEEEeccCCCCcee-E--EEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCC--cee
Q psy11701        437 GYKVQTWTEKDGEGSIR-E--LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQ--SLE  511 (745)
Q Consensus       437 ~y~i~~~~~~~~~~~~~-~--~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~--~~~  511 (745)
                      +|.|+|+.......... .  +.. ......++|.+|.|++.|.|+|.|.|..|.|+ |..+.++|.+++|++|+  .+.
T Consensus       394 ~y~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~~P~~p~~~~~~  471 (731)
T 2v5y_A          394 NLTVHYCYQVGGQEQVREEVSWDT-ENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESIQ  471 (731)
T ss_dssp             EEEEEEEEESSSSEEEEEEEECCS-SCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCCCCCCCCCTTTCE
T ss_pred             eEEEEEEEccCCCCccceeEEEEe-cCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccCCCCCCCCcceEE
Confidence            99999987764322211 1  122 45678899999999999999999999999985 88899999999998775  444


Q ss_pred             EEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccC----CcccccccccCCCcceeeecCCCCCccEEEEEEEEec
Q psy11701        512 AIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVG----PLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTK  587 (745)
Q Consensus       512 ~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~  587 (745)
                      ... ..++|.|+|++|...+|.|.+|.|+|+..+.....    .... .. ......++++|.+|.|++.|.|+|.|+|.
T Consensus       472 ~~~-~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~  548 (731)
T 2v5y_A          472 GST-FEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSG-RV-SKLGNETHFLFFGLYPGTTYSFTIRASTA  548 (731)
T ss_dssp             EEE-ETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC---CCCCCEE-EE-EEETTCCEEEECSCCTTEEEEEEEEEEET
T ss_pred             eee-cCCeEEEEEcCCCCCCCCccceEEEEEECcCCCccccccCcce-EE-eecCCcceEEecCCCCCCEEEEEEEEEeC
Confidence            443 47899999999988889999999999876532110    0000 00 11456689999999999999999999999


Q ss_pred             CCCCCCcceeeecccCCCCCCC-----CCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccce
Q psy11701        588 AGDGAESKYLFYVPFKNPDNVE-----GRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSE  662 (745)
Q Consensus       588 ~G~g~~S~~~~~~~~~~~~~~~-----~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~  662 (745)
                      .|.|++|..........+....     ......+++.|+|.++  ...+|+|.+|.|.|+...............  ...
T Consensus       549 ~G~g~~s~~~~~T~~~~P~~p~~~~~~~~~~~~~si~l~W~pp--~~~~g~I~~Y~v~~~~~~~~~~~~~~~~~~--~~~  624 (731)
T 2v5y_A          549 KGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPA--HSRGAPVSVYQIVVEEERPRRTKKTTEILK--CYP  624 (731)
T ss_dssp             TEEEEEEEEEEECCCCCCCC------------------------------------------------------------
T ss_pred             CccCCCcccEEEcCCCCCCCCCcccccccccCCceEEEEEeCC--CCCCCceEEEEEEEEecCCCCCcccccccc--Ccc
Confidence            9999998643322222222111     1123567899999865  567889999999998654321100000000  000


Q ss_pred             EEeccCC-CcceEEEEEEEEeeeecCCCCeEEEEEec-CCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCC
Q psy11701        663 LVLANQP-TFQPYEIKVVQTWTEKDGEGSIRELIVNK-GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE  740 (745)
Q Consensus       663 ~~~~~l~-~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~  740 (745)
                      ..+.... ....+...+.|......... ...+.+.+ .....|.+..|+|++.|.|+|+|++.+|.|..++.+.+.|+.
T Consensus       625 ~~~~~~~~~~~~~~~y~aa~~~p~~~~~-~~~~~vg~~~~~~~~~n~~L~p~~~Y~i~v~A~s~~g~~~~~~~v~~~t~~  703 (731)
T 2v5y_A          625 VPIHFQNASLLNSQYYFAAEFPADSLQA-AQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKG  703 (731)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCHHHHhhcCCcceEEEEcChhhCcc-cCCEEECCCCeECCEECCCCCCCCceEEEEEEEEecCCCcEeeeEEEeccc
Confidence            0000000 00000000001000000000 00111111 122345667899999999999999999999999999999984


Q ss_pred             C
Q psy11701        741 G  741 (745)
Q Consensus       741 ~  741 (745)
                      +
T Consensus       704 ~  704 (731)
T 2v5y_A          704 A  704 (731)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=3.2e-41  Score=375.60  Aligned_cols=503  Identities=20%  Similarity=0.243  Sum_probs=363.2

Q ss_pred             ccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701         40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID  119 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~  119 (745)
                      +....+.+|+.++|.|.+.+ |.+.+.|+|+|..|....++.+...+..|.|.+++.+|+|.|+|.|.+..|...+..+.
T Consensus       118 ~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~  196 (642)
T 1e07_A          118 NNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVI  196 (642)
T ss_pred             cCceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEE
Confidence            44567899999999999998 88899999999999888888877777899999999999999999999988876667788


Q ss_pred             EEEEecCe-EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEE
Q psy11701        120 LSVLAAPY-FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       120 l~V~~~p~-~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      |.|..+|. +...|....+.+|+.+.|.|.+.+.|.+.++|+++|..+..          ...|.|.+++.+|+|.|+|.
T Consensus       197 l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~----------~~~L~i~~~~~~d~G~Y~C~  266 (642)
T 1e07_A          197 LNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS----------TQELFIPNITVNNSGSYTCQ  266 (642)
T ss_pred             EEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEccc----------CCceEEecccccCCeEEEEE
Confidence            99886553 45567777889999999999999999999999999988742          35799999999999999999


Q ss_pred             EEeCCceEEE--EEEEEEeecC--CeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC-ceEEEe-ecCcE
Q psy11701        199 ATNSLGYVYK--DVYVNVLAHA--PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG-GRYTIL-ETGDL  272 (745)
Q Consensus       199 ~~~~~g~~~~--~~~l~v~~~~--p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~-~~~~l  272 (745)
                      |.|..|....  .+.|.|...+  |.+. .+....+..|+.+.|.|.+.+.| +.+.|++++..+.. .++... ..+.|
T Consensus       267 a~n~~g~~~~s~~~~v~v~~~~~~p~i~-~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L  344 (642)
T 1e07_A          267 AHNSDTGLNRTTVTTITVYAEPPKPFIT-SNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTL  344 (642)
T ss_pred             EEeCCCceEEeeeEEEEEEccCCCCEEE-cCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEE
Confidence            9998876544  3556665432  3333 33344566688899999998876 68999999988753 344332 34689


Q ss_pred             EEcccCCCCCEEEEEEEEeCCceE-EEEEEEEEeeccee-ecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeec
Q psy11701        273 KITDVAFADSGEYTCFARNKLGTA-QGSGSLTVKEHTHI-TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI  350 (745)
Q Consensus       273 ~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~p~~-~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~  350 (745)
                      .|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.. ...|....+..|+.+.|.|.+.+.|.  +.+.|++++..+
T Consensus       345 ~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~i~W~~~g~~~  422 (642)
T 1e07_A          345 TLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPP--AQYSWLIDGNIQ  422 (642)
T ss_pred             EEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCC--CeEEEEECCEEc
Confidence            999999999999999999998864 45678888766643 34456677889999999999998876  689999999876


Q ss_pred             cCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEE--EEEEEeccCCCCCCc--eeEEeecCceeEEEEEeC
Q psy11701        351 DFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ--ATLTVQVPLEAPSNF--TLIQVIDAKKAVVSWNPV  426 (745)
Q Consensus       351 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~--~~l~v~~pp~~P~~~--~~~~~~~~~~v~l~W~~~  426 (745)
                      .          ....|.|..+...|.|.|+|.|.|..|....+  ..+.+..++.+|...  ....+..+..+.|.|...
T Consensus       423 ~----------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~  492 (642)
T 1e07_A          423 Q----------HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE  492 (642)
T ss_pred             C----------CCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECC
Confidence            4          23468999999999999999999999876554  445555444444211  011124677899999874


Q ss_pred             CCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCC-CcceEEeCCCCCCC
Q psy11701        427 SPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPP-SEIISFVTPEGVPG  505 (745)
Q Consensus       427 ~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~-S~~~~~~t~~~~P~  505 (745)
                      .+        ...+.|+..+........+.+ ..+...+.|.++...+.+.|+|.|.|..|.... +..+.+...+..+.
T Consensus       493 ~~--------~~~i~W~~~g~~l~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~  563 (642)
T 1e07_A          493 AQ--------NTTYLWWVNGQSLPVSPRLQL-SNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPI  563 (642)
T ss_pred             CC--------CcEEEEEECCEeCCCCCcEEE-cCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcce
Confidence            21        123433333222112222333 334568899999999999999999999986533 23444442221111


Q ss_pred             -CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEE
Q psy11701        506 -TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG  584 (745)
Q Consensus       506 -~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a  584 (745)
                       .|.+..+  .....+.|.......+.  .   .|.|...+..           + . ....+.|.++.+...-.++..|
T Consensus       564 ~~~~~~~v--~~g~~~~l~C~~~g~p~--p---~v~W~~~g~~-----------i-~-~~~~L~i~~~~~~d~G~Y~C~a  623 (642)
T 1e07_A          564 ISPPDSSY--LSGANLNLSCHSASNPS--P---QYSWRINGIP-----------Q-Q-HTQVLFIAKITPNNNGTYACFV  623 (642)
T ss_pred             ecCCceeE--EcCCcEEEEEEeccCCC--C---eEEEEECCEE-----------C-c-cCceEEECcccccCCeEEEEEE
Confidence             2223222  23445666655422111  1   4666553321           1 1 1246778888888888899999


Q ss_pred             EecCCCCCCcce
Q psy11701        585 YTKAGDGAESKY  596 (745)
Q Consensus       585 ~n~~G~g~~S~~  596 (745)
                      .|..|....+..
T Consensus       624 ~N~~G~~~~s~~  635 (642)
T 1e07_A          624 SNLATGRNNSIV  635 (642)
T ss_pred             EecccCcceeEE
Confidence            999998765543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=6.7e-42  Score=356.89  Aligned_cols=365  Identities=23%  Similarity=0.334  Sum_probs=297.4

Q ss_pred             CeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeC--CEEcc------CceEEEee---cCcEEEcccCCCCCEEEEE
Q psy11701        219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN--QKELT------GGRYTILE---TGDLKITDVAFADSGEYTC  287 (745)
Q Consensus       219 p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~~------~~~~~~~~---~~~l~i~~~~~~d~G~Y~C  287 (745)
                      |.|.. +....+.+|++++|.|.+.+.|.+.+.|+++  +..+.      ..++.+..   .+.|.|.+++.+|+|.|+|
T Consensus         2 P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   80 (389)
T 2jll_A            2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC   80 (389)
T ss_dssp             CEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEE
T ss_pred             CeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEE
Confidence            55555 5567788899999999999999999999999  77764      34555542   3579999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEc---CCe
Q psy11701        288 FARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQS---NDY  364 (745)
Q Consensus       288 ~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~  364 (745)
                      .|.|..|..+..+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++..+......++...   ...
T Consensus        81 ~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~i~W~~~g~~l~~~~~~~~~~~~~~~~~  158 (389)
T 2jll_A           81 EAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPP--ASIHWRRDKLVLPAKNTTNLKTYSTGRKM  158 (389)
T ss_dssp             EEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESC--CEEEEEETTEESSCTTCTTEEEEECSSCE
T ss_pred             EEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCC--CeEEEEECCccCCcccCceEEEeccCCEE
Confidence            9999999999999999999998877777667889999999999999885  78999999998875433333322   345


Q ss_pred             EEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEe
Q psy11701        365 SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWT  444 (745)
Q Consensus       365 ~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~  444 (745)
                      .|.|..+...|.|.|+|.|.|..|.....+.+.+..+|.+|.++.+.. ....++.|.|.++ ....+.++.+|.|+|+.
T Consensus       159 ~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~-~~~~~~~l~w~~p-~~~~g~pi~~y~v~~~~  236 (389)
T 2jll_A          159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIE-LSQTTAKVSFNKP-DSHGGVPIHHYQVDVKE  236 (389)
T ss_dssp             EEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEE-ECSSCEEEEEECC-SCCTTSCEEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEee-ccCCEEEEEEeCC-CCCCCcceEEEEEEEEE
Confidence            799999999999999999999999998889999988999998888877 7889999999974 33445578899998876


Q ss_pred             ccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCCCC-CCCCCCceeEEEcCCceEEEE
Q psy11701        445 EKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG-VPGTVQSLEAIPLGSSAFYLK  523 (745)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~-~P~~p~~~~~~~~~~~~i~l~  523 (745)
                      .+.  ..+..... ......+.|.+|.+++.|.|+|.|.|..|.+.+|..+.+.+.+. +|.+| .+.....+.+++.|+
T Consensus       237 ~~~--~~~~~~~~-~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p-~~~~~~~~~~~v~l~  312 (389)
T 2jll_A          237 VAS--EIWKIVRS-HGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP-SIHGQPSSGKSFKLS  312 (389)
T ss_dssp             TTC--SCCEEEEC-STTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCC-CEEEEEETTTEEEEE
T ss_pred             CCC--cccEEeec-cCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCC-ccccccCcCCEEEEE
Confidence            544  23333433 45667899999999999999999999999999999888888766 56666 577777899999999


Q ss_pred             eeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCccee
Q psy11701        524 WVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       524 W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~  597 (745)
                      |.+|.+.+++|.+|.|+|+..+...|.....    + .....++.|.+|.|++.|+|+|.|.|..|.|++|...
T Consensus       313 W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~----~-~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~~  381 (389)
T 2jll_A          313 ITKQDDGGAPILEYIVKYRSKDKEDQWLEKK----V-QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYE  381 (389)
T ss_dssp             ECCCCCCSSCCCEEEEEEEC-----CCBCCE----E-CTTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEEE
T ss_pred             EECCCCCCCcccEEEEEEEeCCCCcceeEee----c-cCCcceEEeCCcCCCCEEEEEEEEEcCCcCCCceeeE
Confidence            9999888899999999999865544432211    2 4566889999999999999999999999999998663

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=3.6e-43  Score=364.43  Aligned_cols=361  Identities=24%  Similarity=0.367  Sum_probs=282.2

Q ss_pred             CCeeEeeccceeE---ecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccC-CCCCCEEEEEEEEe
Q psy11701         33 PKQQYVTRKKEVA---LRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHV-EFSDQGSYTCEVSN  108 (745)
Q Consensus        33 p~~~~~~~~~~~v---~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~  108 (745)
                      ++.|+..|.+..+   .+|+++.|.|.+.|.|.|+|+|+|||.+|.......+...++.|.|.++ +.+|+|.|+|.|.|
T Consensus         5 ~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N   84 (384)
T 3kld_A            5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATN   84 (384)
T ss_dssp             EEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred             CCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEEc
Confidence            3456677777776   5899999999999999999999999999975433222223456777776 78999999999999


Q ss_pred             CCeeeEEEEEEEEEEecCeEEec-CceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCCCCCceeecCceEEEcc
Q psy11701        109 GVGEAKSYSIDLSVLAAPYFTVE-PEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN  186 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~~p~~~~~-~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~  186 (745)
                      ..|...+..+.|.+...+.+... +....+.+|+.+.|.|... +.|.+.+.|++++..+.... ........+.|.|.+
T Consensus        85 ~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~L~I~~  163 (384)
T 3kld_A           85 SFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDN-RRFVSQETGNLYIAK  163 (384)
T ss_dssp             TTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSS-SEEECTTTCCEEESS
T ss_pred             CcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeec-cEEEEcCCCcEEEee
Confidence            99987766677777665555433 3457789999999999764 46778999999998875221 111223457899999


Q ss_pred             CCCCCCEEEEEEEEeCCceEEEE---EEEEEe------ecCCee-eeCCCceEEecCceEEEEEEEeecCCCeEEEeeCC
Q psy11701        187 LRKSDTGNYGCNATNSLGYVYKD---VYVNVL------AHAPEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQ  256 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g~~~~~---~~l~v~------~~~p~~-~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~  256 (745)
                      +..+|+|.|+|.|.|..+.....   ..+.+.      ..+|.+ ...+....+.+|+.+.|.|.+.+.|.+.+.|++++
T Consensus       164 v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~  243 (384)
T 3kld_A          164 VEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRAD  243 (384)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETT
T ss_pred             cCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCC
Confidence            99999999999999987754321   122221      112333 33456677889999999999999999999999954


Q ss_pred             -EEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecC
Q psy11701        257 -KELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP  335 (745)
Q Consensus       257 -~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~  335 (745)
                       ..+..........+.|.|.+++.+|+|.|+|.|.|..|.......|.|..+|.+...+....+..|+.+.|.|.+.|.|
T Consensus       244 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P  323 (384)
T 3kld_A          244 GKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRP  323 (384)
T ss_dssp             CCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEES
T ss_pred             CccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccC
Confidence             4454433333445689999999999999999999999999899999999999888888888999999999999999998


Q ss_pred             CCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        336 SLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ  399 (745)
Q Consensus       336 ~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~  399 (745)
                      .  +.+.|++++..+..  ..++.. .++.|.|..+...|.|.|+|.|.|..|....++.|.|.
T Consensus       324 ~--p~i~W~k~g~~l~~--~~~~~~-~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          324 K--PTYRWLKNGDPLLT--RDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             C--CEEEEEETTEECCC--BTTEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             C--CeEEEEECCEECCC--CccEEE-eCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence            6  78999999998863  333333 34589999999999999999999999999999888874

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.2e-42  Score=364.62  Aligned_cols=367  Identities=26%  Similarity=0.454  Sum_probs=306.3

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEee-cCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccC-----CCCCCEEE
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGG-TPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHV-----EFSDQGSY  102 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~-----~~~d~G~Y  102 (745)
                      ..+..+..+|++..+.+|++++|.|.+.+ .|.+.+.|+|||..+...  .+..... +++|.|.++     +.+|+|.|
T Consensus        19 ~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~-~~~l~i~~~~~~~~~~~D~G~Y   97 (403)
T 3laf_A           19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLP-NGSLLIQNILHSRHHKPDEGLY   97 (403)
T ss_dssp             CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECT-TSCEEECSCCCBTTBCSSCEEE
T ss_pred             ceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEec-CCcEEEeeeeccCCCCCcceEE
Confidence            44677889999999999999999999976 577899999999998753  4444433 446888877     77899999


Q ss_pred             EEEEEeC-CeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce-eecCc
Q psy11701        103 TCEVSNG-VGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-KVGPN  180 (745)
Q Consensus       103 ~C~~~~~-~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~  180 (745)
                      +|.+.+. .+...+..+.|.|..+|.+...+....+.+|+++.|.|.+.+.|.+.+.|+|+|..+.......+. ...++
T Consensus        98 ~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  177 (403)
T 3laf_A           98 QCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG  177 (403)
T ss_dssp             EEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTS
T ss_pred             EEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCc
Confidence            9999864 455555678889988998888888899999999999999999999999999999888644333333 33467


Q ss_pred             eEEEccCCCCCCEEEEEEEEeCCceEE-EEEEEEEeecC-----CeeeeCCCceEEecCceEEEEEEEeecCCCeEEEee
Q psy11701        181 RITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHA-----PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH  254 (745)
Q Consensus       181 ~L~i~~v~~~d~G~Y~C~~~~~~g~~~-~~~~l~v~~~~-----p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~  254 (745)
                      .|.|.++..+|+|.|+|.+.|..+... ..+.+.|...+     +.+...+....+.+|+.++|.|.+.+.|.+.+.|++
T Consensus       178 ~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  257 (403)
T 3laf_A          178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR  257 (403)
T ss_dssp             CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEE
T ss_pred             eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEE
Confidence            899999999999999999999877633 34666665433     134556777888999999999999999999999999


Q ss_pred             CCEEcc--CceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEE
Q psy11701        255 NQKELT--GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAV  332 (745)
Q Consensus       255 ~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~  332 (745)
                      ++..+.  ..++.....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+...+....+..|+.+.|.|.+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~  337 (403)
T 3laf_A          258 GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVS  337 (403)
T ss_dssp             TTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEE
T ss_pred             CCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEe
Confidence            998875  345555566789999999999999999999999999999999999999988888888889999999999999


Q ss_pred             ecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccC
Q psy11701        333 SDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPL  402 (745)
Q Consensus       333 ~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp  402 (745)
                      +.|.  +.+.|++++..+.  ............|.|..+...|.|.|+|.|.|..|.....+.|.|..||
T Consensus       338 g~p~--p~v~W~~~g~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          338 GKPV--PTVNWMKNGDVVI--PSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             EESC--CEEEEEETTEECC--CSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             eccC--CEEEEEECCEECC--CCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence            9886  6899999998876  3344555566789999999999999999999999999999999887664

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=4.9e-40  Score=376.69  Aligned_cols=531  Identities=21%  Similarity=0.283  Sum_probs=377.1

Q ss_pred             CCCCeeEe-eccceeEecCCcEEEEEEEeecCCCeeEEEECCEec------CCCCCeEeccCCcEEEEccCCCCCCEEEE
Q psy11701         31 HAPKQQYV-TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPI------NPSDRISQGNYGKSLIIKHVEFSDQGSYT  103 (745)
Q Consensus        31 ~~p~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (745)
                      .+|.+... .+....+.+|++++|.|.+.|.|.+.+.|+|++...      ....++.  ..+++|.|.+++.+|+|.|+
T Consensus       245 ~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~  322 (816)
T 3dmk_A          245 AVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVK--QVSGTLIIKDAVVEDSGKYL  322 (816)
T ss_dssp             CCCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEE--EETTEEEECSCCGGGCEEEE
T ss_pred             CCCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceE--eccceEEECCCCHhHCEEEE
Confidence            34544322 235678899999999999999999999999954322      2233443  23568999999999999999


Q ss_pred             EEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEE
Q psy11701        104 CEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT  183 (745)
Q Consensus       104 C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~  183 (745)
                      |.|.|..|... ..+.|.|..+|.+...+....+.+|+++.|.|.+.+.|.+.+.|+|+|..+..         ..+.|.
T Consensus       323 C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~---------~~~~L~  392 (816)
T 3dmk_A          323 CVVNNSVGGES-VETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH---------SESVLR  392 (816)
T ss_dssp             EEEECSSCEEE-EEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSC---------CSSEEE
T ss_pred             EEEEcCCCceE-EEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCC---------CCCEEE
Confidence            99999888765 66888998888888889999999999999999999999999999999998863         246899


Q ss_pred             EccCCCCCCEEEEEEEEeCCceEEEEEEEEEe--ecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC
Q psy11701        184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVL--AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG  261 (745)
Q Consensus       184 i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~--~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~  261 (745)
                      |.+++.+|+|.|+|.+.|..|.....+.+.|.  ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus       393 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~  472 (816)
T 3dmk_A          393 IESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN  472 (816)
T ss_dssp             ESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCS
T ss_pred             EcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCC
Confidence            99999999999999999999987777777764  3578888878888899999999999999999999999999988754


Q ss_pred             c-eEEE----eecC----cEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEE
Q psy11701        262 G-RYTI----LETG----DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAV  332 (745)
Q Consensus       262 ~-~~~~----~~~~----~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~  332 (745)
                      . ++..    ...+    .|.|.++...|+|.|+|.|.|..|.....+.|.|..+|.+. .+....+..|+.+.|.|.+.
T Consensus       473 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~-~~~~~~v~~G~~v~l~C~~~  551 (816)
T 3dmk_A          473 NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCPVA  551 (816)
T ss_dssp             CTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEEC-CCCCEEEETTCCEEEECCEE
T ss_pred             CCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeE-ccCCeEEecCCeEEEEEEec
Confidence            3 3322    1122    59999999999999999999999999999999999888654 44456788999999999999


Q ss_pred             ecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCC-CCCCEEEEEEEEeCCceE-EEEEEEEEeccCCCC----C
Q psy11701        333 SDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSS-ELDSGQYTCRAQTELDFI-EAQATLTVQVPLEAP----S  406 (745)
Q Consensus       333 ~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~c~a~n~~g~~-~~~~~l~v~~pp~~P----~  406 (745)
                      +.|.  ..+.|++++..+..  ..+.....++.|.|..+. ..|.|.|+|.|.|..|.. .....+.+..+|...    .
T Consensus       552 g~p~--~~i~W~k~~~~l~~--~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~  627 (816)
T 3dmk_A          552 GYPI--DSIVWERDNRALPI--NRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFE  627 (816)
T ss_dssp             CSSE--EEEEEEETTEESCC--STTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCC
T ss_pred             CCCC--CEEEEEECCeEccc--CCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCcccccccc
Confidence            8875  68999999998863  344555567789999998 589999999999999853 445667776554322    1


Q ss_pred             CceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCC----ceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        407 NFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG----SIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       407 ~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      ...+   ..+..+.|.|.......      ...+. |..++...    ....... ......+.|..+.....+.|+|.|
T Consensus       628 ~~~~---~~G~~v~L~C~~~~~~~------~~~i~-W~~~g~~l~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a  696 (816)
T 3dmk_A          628 EGPA---QVGQYLTLHCSVPGGDL------PLNID-WTLDGQAISEDLGITTSRV-GRRGSVLTIEAVEASHAGNFTCHA  696 (816)
T ss_dssp             SSCE---ESSCEEEEEEBCCCSSS------CCEEE-EEETTBCCCGGGTCEEEEE-TTTEEEEEEESCCGGGCEEEEEEE
T ss_pred             cccc---CCCCeEEEEEEEeCCCC------CCEEE-EEECCeEcCCCCCeeEEEc-CCCeeEEEEccCChhhCEEEEEEE
Confidence            2222   56788999998632111      12333 33332211    1111122 345678999999999999999999


Q ss_pred             ecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCccccc--cccc
Q psy11701        483 FNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL--PYIS  560 (745)
Q Consensus       483 ~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~--~~~~  560 (745)
                      .|..|....+..+.+...+..-..|.+..+  .....+.|.-..-..   +.-  .|.|...+...........  ... 
T Consensus       697 ~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v--~~G~~v~l~C~~~g~---P~p--~i~W~k~~~~~~~~~~~~~~~~~~-  768 (816)
T 3dmk_A          697 RNLAGHQQFTTPLNVYVPPRWILEPTDKAF--AQGSDAKVECKADGF---PKP--QVTWKKAVGDTPGEYKDLKKSDNI-  768 (816)
T ss_dssp             ECSSCEEEEEEEECEEEEEEEEECCCCEEE--ETTCCEEEECEEEEE---SCC--EEECCEECSSSTTCCBCCCCBTTE-
T ss_pred             EeCCccEEEEEEEEEEeCCceeeeccccee--cCCCcEEEEEEEecC---CCC--eEEEEecCCCCCccccccccCCCE-
Confidence            999887655544444321110012222221  123333333221100   000  2444433221111000000  000 


Q ss_pred             CCCcceeeecCCCCCccEEEEEEEEecCCCCCCccee
Q psy11701        561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       561 ~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~  597 (745)
                      ........|.++.....=.++..|.|..|.+..+...
T Consensus       769 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~  805 (816)
T 3dmk_A          769 RVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM  805 (816)
T ss_dssp             EEETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEE
T ss_pred             EecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEE
Confidence            0012357788888877777888999999988765443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=2.8e-42  Score=359.61  Aligned_cols=355  Identities=20%  Similarity=0.359  Sum_probs=283.1

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEE-CCEecCCCCCeEeccCCcEEEEccCCCCC------CEEEEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSD------QGSYTC  104 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~-~~~~i~~~~~~~~~~~~~~L~i~~~~~~d------~G~Y~C  104 (745)
                      +|.+...++....+.+|+.++|.|.+.|.|.+++.|+| ||.++....+......+++|.|.+++.+|      +|.|+|
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C   82 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC   82 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEE
Confidence            34444433344668899999999999999999999999 88888765443333456689999999997      999999


Q ss_pred             EEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCC---CeEEEEeCCEeccCCC--CCCce-eec
Q psy11701        105 EVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPE---PEIHWVHNGKPISQAP--PNPRR-KVG  178 (745)
Q Consensus       105 ~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~---~~v~W~~~g~~~~~~~--~~~~~-~~~  178 (745)
                      .|.|..|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.+.   +.+.|++++..+....  ...+. ...
T Consensus        83 ~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T 2v5m_A           83 LARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP  162 (388)
T ss_dssp             EEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECT
T ss_pred             EEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEcc
Confidence            99999988766778899988998888888889999999999999987543   6899999987764221  12222 335


Q ss_pred             CceEEEccCCCCCC-EEEEEEEEeCCceEEE-E---EEEEEeec----CCee-eeCCCceEEecCceEEEEEEEeecCCC
Q psy11701        179 PNRITIENLRKSDT-GNYGCNATNSLGYVYK-D---VYVNVLAH----APEI-TEAPKDEYTVDGKTVVLTCRVFGAPKP  248 (745)
Q Consensus       179 ~~~L~i~~v~~~d~-G~Y~C~~~~~~g~~~~-~---~~l~v~~~----~p~~-~~~~~~~~v~~g~~~~l~C~~~~~p~~  248 (745)
                      ++.|.|.+++.+|+ |.|+|.+.|..+.... .   ..+.|...    +|.+ ........+.+|+.++|.|.+.+.|.+
T Consensus       163 ~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p  242 (388)
T 2v5m_A          163 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP  242 (388)
T ss_dssp             TSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCC
T ss_pred             CCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCC
Confidence            67899999999999 9999999997643322 2   24444421    1211 112334568899999999999999999


Q ss_pred             eEEEeeCCEEc------c-CceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEec
Q psy11701        249 EVNWIHNQKEL------T-GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEA  321 (745)
Q Consensus       249 ~i~W~~~~~~~------~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~  321 (745)
                      .+.|++++..+      . ..++. ...+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+...|....+..
T Consensus       243 ~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~  321 (388)
T 2v5m_A          243 SFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF  321 (388)
T ss_dssp             EEEEEEECTTSSCEEECCCSSSEE-EETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECT
T ss_pred             EEEEEecCCCCcccccccccCcee-cccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecC
Confidence            99999974322      1 22222 3467899999999999999999999999998999999999888877788888999


Q ss_pred             CCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV  398 (745)
Q Consensus       322 g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v  398 (745)
                      |+.+.|.|.+.+.|.  +.+.|++++..+..         .+..|.|..+...|.|.|+|.|.|..|.....+.|.|
T Consensus       322 g~~~~l~C~~~g~p~--p~i~W~~~g~~i~~---------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          322 GRPAVFTCQYTGNPI--KTVSWMKDGKAIGH---------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             TSCEEEEEEEEEECC--CEEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCEEEEEEeccccC--CeEEEEECCEECcc---------CCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            999999999999886  68999999988752         2468999999999999999999999999998888876

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1e-41  Score=354.46  Aligned_cols=358  Identities=27%  Similarity=0.415  Sum_probs=288.3

Q ss_pred             CCeeEeeccceeE---ecCCcEEEEEEEeecCCCeeEEEECCEecCCC--CCeEeccCCcEEEEccCCC-CCCEEEEEEE
Q psy11701         33 PKQQYVTRKKEVA---LRNKKVELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIKHVEF-SDQGSYTCEV  106 (745)
Q Consensus        33 p~~~~~~~~~~~v---~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~  106 (745)
                      |+.|...|.+..+   .+|++++|.|.+.|.|.+++.|+|||..|...  .++..  .+++|.|.++.. +|+|.|+|.|
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~--~~~~L~i~~~~~~~D~G~Y~C~a   81 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL--VAGDLVISNPVKAKDAGSYQCVA   81 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEE--ETTEEEEESCCHHHHCEEEEEEE
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEe--eCCeEEEecccccccCEEEEEEE
Confidence            5566777888776   78999999999999999999999999998754  44554  345899999997 9999999999


Q ss_pred             EeCCeeeEEEEEEEEEEecCeEEec-CceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCcee-ecCceEE
Q psy11701        107 SNGVGEAKSYSIDLSVLAAPYFTVE-PEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRIT  183 (745)
Q Consensus       107 ~~~~g~~~~~~~~l~V~~~p~~~~~-~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~  183 (745)
                      .+..|...+..+.|.|...|.+... +....+.+|+++.|.|.+ .+.|.+.+.|++++..+.......... ...+.|.
T Consensus        82 ~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~  161 (382)
T 1cs6_A           82 TNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY  161 (382)
T ss_dssp             EETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEE
T ss_pred             EcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEE
Confidence            9998887666678888776665443 556788999999999996 457889999999987654322222222 2347899


Q ss_pred             EccCCCCCCEEEEEEEEeCCceEEEE-----EEEEEee-----cCCeeee-CCCceEEecCceEEEEEEEeecCCCeEEE
Q psy11701        184 IENLRKSDTGNYGCNATNSLGYVYKD-----VYVNVLA-----HAPEITE-APKDEYTVDGKTVVLTCRVFGAPKPEVNW  252 (745)
Q Consensus       184 i~~v~~~d~G~Y~C~~~~~~g~~~~~-----~~l~v~~-----~~p~~~~-~~~~~~v~~g~~~~l~C~~~~~p~~~i~W  252 (745)
                      |.+++.+|+|.|+|.+.|..|.....     +.+.+..     .+|.+.. .+....+.+|+.++|.|.+.+.|.+.+.|
T Consensus       162 i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W  241 (382)
T 1cs6_A          162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW  241 (382)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEE
T ss_pred             EEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEE
Confidence            99999999999999999877432221     3444321     2455544 35677889999999999999999999999


Q ss_pred             eeCCEEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEE
Q psy11701        253 IHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAV  332 (745)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~  332 (745)
                      ++++..+...  .....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+...+....+..|+.+.|.|.+.
T Consensus       242 ~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~  319 (382)
T 1cs6_A          242 RKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVAS  319 (382)
T ss_dssp             EECCSCCSCC--CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEE
T ss_pred             EECCcccccE--EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEee
Confidence            9988765431  11234579999999999999999999999999899999999999888888888899999999999999


Q ss_pred             ecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        333 SDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ  399 (745)
Q Consensus       333 ~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~  399 (745)
                      +.|.  +.+.|++++..+...  .++.. .++.|.|..+...|.|.|+|.|.|..|.....+.|.|.
T Consensus       320 g~p~--p~v~W~~~g~~~~~~--~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          320 GKPR--PAVRWLRDGQPLASQ--NRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EESC--CEEEEEETTEECCCC--SSEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eecC--CEEEEEECCEECCCC--ceEEE-ECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            9886  679999999988743  34433 34589999999999999999999999999988888875

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.9e-38  Score=353.26  Aligned_cols=511  Identities=17%  Similarity=0.201  Sum_probs=352.7

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC-------------------CCCeEeccCCcEEEEccCCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP-------------------SDRISQGNYGKSLIIKHVEF   96 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~-------------------~~~~~~~~~~~~L~i~~~~~   96 (745)
                      +..+|....+.+|++++|.|...+.+...+.|+|++.....                   .+|..+.. +.+|.|.+++.
T Consensus         2 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~-~~sL~I~~v~~   80 (642)
T 1e07_A            2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP-NASLLIQNIIQ   80 (642)
T ss_pred             ceEeccCCcccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceeecc-CCcEEECCCCc
Confidence            45677888899999999999986666779999994432211                   11222222 34799999999


Q ss_pred             CCCEEEEEEEEeCCeeeEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCC
Q psy11701         97 SDQGSYTCEVSNGVGEAKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP  173 (745)
Q Consensus        97 ~d~G~Y~C~~~~~~g~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~  173 (745)
                      +|+|.|+|.+.+.........+.|.|..   +|.+... ....+.+|+.+.|.|.+.+ |.+.++|+++|..+..... .
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~-~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~-~  157 (642)
T 1e07_A           81 NDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSN-NSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPR-L  157 (642)
T ss_pred             ccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEcc-CceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCc-e
Confidence            9999999999876433334566777765   4444443 3456889999999999998 8899999999998874321 1


Q ss_pred             ceeecCceEEEccCCCCCCEEEEEEEEeCCceE-EEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEE
Q psy11701        174 RRKVGPNRITIENLRKSDTGNYGCNATNSLGYV-YKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW  252 (745)
Q Consensus       174 ~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~-~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W  252 (745)
                      ......+.|.|.++..+|+|.|+|.+.|..|.. ...+.|.|...|+.....+....+.+|+.++|.|.+.+.|.+.+.|
T Consensus       158 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W  237 (642)
T 1e07_A          158 QLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW  237 (642)
T ss_pred             EEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEE
Confidence            222345789999999999999999999988764 3457788876565556667777889999999999999999999999


Q ss_pred             eeCCEEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEE--EEEEEEeec---ceeecCCCcEEEecCCeEEE
Q psy11701        253 IHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQG--SGSLTVKEH---THITDQPEDYEVEAGQSATF  327 (745)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~--~~~l~v~~~---p~~~~~p~~~~~~~g~~~~l  327 (745)
                      ++++..+.       ....|.|.++..+|+|.|+|.|.|..|....  ...|.|..+   |.+. .+....+..|+.+.|
T Consensus       238 ~~~g~~i~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~-~~~~~~~~~g~~v~l  309 (642)
T 1e07_A          238 FVNGTFQQ-------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFIT-SNNSNPVEDEDAVAL  309 (642)
T ss_pred             EECCeEcc-------cCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEE-cCCceeEecCCcEEE
Confidence            99998773       2457999999999999999999998876543  455666543   2222 233344566888999


Q ss_pred             EEEEEecCCCCcEEEEeeCCeeccCCCCCeEEE-cCCeEEEEecCCCCCCEEEEEEEEeCCceE-EEEEEEEEeccCCCC
Q psy11701        328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ-SNDYSLTVTKSSELDSGQYTCRAQTELDFI-EAQATLTVQVPLEAP  405 (745)
Q Consensus       328 ~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~l~v~~pp~~P  405 (745)
                      .|.+.+.+   +.+.|++++..+...  .++.. .....|.|..+...|.|.|+|.|.|..|.. ...+.|.|..+|..|
T Consensus       310 ~C~~~~~p---~~v~W~~~g~~l~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~  384 (642)
T 1e07_A          310 TCEPEIQN---TTYLWWVNNQSLPVS--PRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDP  384 (642)
T ss_pred             EEECCCCC---ccEEEEECCccCCCc--CCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCC
Confidence            99998875   579999999887632  23332 345689999999999999999999999864 345778887665443


Q ss_pred             CCc-eeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEec
Q psy11701        406 SNF-TLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN  484 (745)
Q Consensus       406 ~~~-~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n  484 (745)
                      ... .......+..+.|.|.....+.       -.+ .|.+++..         ......+.|.++.....+.|+|.|.|
T Consensus       385 ~~~~~~~~~~~g~~~~l~C~~~g~p~-------~~i-~W~~~g~~---------~~~~~~L~i~~~~~~d~G~Y~C~a~n  447 (642)
T 1e07_A          385 TISPSYTYYRPGVNLSLSCHAASNPP-------AQY-SWLIDGNI---------QQHTQELFISNITEKNSGLYTCQANN  447 (642)
T ss_pred             eecCCceEecCCCcEEEEEEcCccCC-------CeE-EEEECCEE---------cCCCceEEEccCChhhCeEEEEEEEc
Confidence            211 1112256678899998732211       133 33333211         12345688899999999999999999


Q ss_pred             CCCCCCCCcceEEeCCCCCCCCCCcee----EEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCccccccccc
Q psy11701        485 GAYNGPPSEIISFVTPEGVPGTVQSLE----AIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS  560 (745)
Q Consensus       485 ~~G~g~~S~~~~~~t~~~~P~~p~~~~----~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~  560 (745)
                      ..|....+..+.+.... .+.+| .+.    ........+.|.+....    +  .-.+.|...+........   ..+ 
T Consensus       448 ~~g~~~~s~~~~v~v~~-~~~~p-~i~~~~~~~v~~g~~v~l~C~~~~----~--~~~i~W~~~g~~l~~~~~---~~~-  515 (642)
T 1e07_A          448 SASGHSRTTVKTITVSA-ELPKP-SISSNNSKPVEDKDAVAFTCEPEA----Q--NTTYLWWVNGQSLPVSPR---LQL-  515 (642)
T ss_pred             CCCCCcccceEEEEEec-cCCCc-eEecCCceeecCCCeEEEEEECCC----C--CcEEEEEECCEeCCCCCc---EEE-
Confidence            99887666544443321 11111 111    12224567888887641    1  124556543322111000   001 


Q ss_pred             CCCcceeeecCCCCCccEEEEEEEEecCCCCC
Q psy11701        561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGA  592 (745)
Q Consensus       561 ~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~  592 (745)
                      ......+.|.++.......++..|.|..|...
T Consensus       516 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  547 (642)
T 1e07_A          516 SNGNRTLTLFNVTRNDARAYVCGIQNSVSANR  547 (642)
T ss_pred             cCCCcEEEEeecChhcCceEEEEeEcCCCCcc
Confidence            12235788888888888888889999988643

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=1.6e-41  Score=356.25  Aligned_cols=367  Identities=22%  Similarity=0.409  Sum_probs=294.9

Q ss_pred             CCCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC--CCeEeccCCcEEEEc----cCCCCCCEEEE
Q psy11701         30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS--DRISQGNYGKSLIIK----HVEFSDQGSYT  103 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~--~~~~~~~~~~~L~i~----~~~~~d~G~Y~  103 (745)
                      ..+|.+....+.+..+.+|++++|.|.+.|.|.+.+.|+|+|..+...  .++.....+++|.|.    +++.+|+|.|+
T Consensus        14 ~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~   93 (404)
T 3p3y_A           14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQ   93 (404)
T ss_dssp             CCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEE
T ss_pred             cCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEE
Confidence            356777777789999999999999999999999999999999988642  344444455667765    88999999999


Q ss_pred             EEEEeCCeeeEEEEEEEEEEecCeEEec-CceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceeecCce
Q psy11701        104 CEVSNGVGEAKSYSIDLSVLAAPYFTVE-PEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR  181 (745)
Q Consensus       104 C~~~~~~g~~~~~~~~l~V~~~p~~~~~-~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~  181 (745)
                      |.+.+..|...+..+.|.|..+|.+... +....+.+|+++.|.|.+ .+.|.+.+.|++++....... .......++.
T Consensus        94 C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~  172 (404)
T 3p3y_A           94 CFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD-KRVSQGHNGD  172 (404)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCC-SSEEECTTSC
T ss_pred             EEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCC-CcEEEcCCCc
Confidence            9999998888777899999988866443 455788999999999999 788899999999875443211 1122335678


Q ss_pred             EEEccCCCCC-CEEEEEEEEeCCceEEEE---EEEEEee------cCCeeeeCC---CceEEecCceEEEEEEEeecCCC
Q psy11701        182 ITIENLRKSD-TGNYGCNATNSLGYVYKD---VYVNVLA------HAPEITEAP---KDEYTVDGKTVVLTCRVFGAPKP  248 (745)
Q Consensus       182 L~i~~v~~~d-~G~Y~C~~~~~~g~~~~~---~~l~v~~------~~p~~~~~~---~~~~v~~g~~~~l~C~~~~~p~~  248 (745)
                      |.|.++...| +|.|+|.+.|..+.....   +.+.+..      .+|.+...+   ....+.+|+.++|.|.+.+.|.+
T Consensus       173 l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~  252 (404)
T 3p3y_A          173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTP  252 (404)
T ss_dssp             EEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCC
T ss_pred             EEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCC
Confidence            9999999999 599999999987764332   4455542      133333222   23468899999999999999999


Q ss_pred             eEEEeeCCEEccCceE-EEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEE
Q psy11701        249 EVNWIHNQKELTGGRY-TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATF  327 (745)
Q Consensus       249 ~i~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l  327 (745)
                      .+.|++++..+..... .....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+...+....+..|+.+.|
T Consensus       253 ~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l  332 (404)
T 3p3y_A          253 DIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRL  332 (404)
T ss_dssp             EEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEE
T ss_pred             cEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEE
Confidence            9999999988765433 333456899999999999999999999999999999999999999888888899999999999


Q ss_pred             EEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ  399 (745)
Q Consensus       328 ~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~  399 (745)
                      .|.+.+.|.  +.+.|++++..+............+..|.|..+...|.|.|+|.|.|..|.....+.|.|.
T Consensus       333 ~C~~~g~p~--p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          333 VCRANGNPK--PTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             ECEEEEESC--CEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEccccCC--CceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            999999886  6799999999887543222222334589999999999999999999999999988888774

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=1.4e-39  Score=372.82  Aligned_cols=524  Identities=15%  Similarity=0.244  Sum_probs=365.7

Q ss_pred             CeeEeeccc-eeEecCCcEEEEEEEeecCCCeeEEEE-CCEecCCCCCeEeccCCcEEEEccCCCCC------CEEEEEE
Q psy11701         34 KQQYVTRKK-EVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSD------QGSYTCE  105 (745)
Q Consensus        34 ~~~~~~~~~-~~v~~G~~~~l~C~~~g~p~~~v~W~~-~~~~i~~~~~~~~~~~~~~L~i~~~~~~d------~G~Y~C~  105 (745)
                      +.|..+|.+ +.+.+|++++|.|.+.|.|.|++.|+| ||+.+....+......+++|.|.+++.+|      +|.|+|.
T Consensus        39 P~~~~~p~~~~~~~~g~~~~l~C~a~g~p~p~~~W~k~~g~~~~~~~~~~~~~~~g~l~i~~~~~~~~~~~~d~G~Y~C~  118 (816)
T 3dmk_A           39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL  118 (816)
T ss_dssp             EEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEE
T ss_pred             CcEEeCCCCeEEEECCCCeEEEeeecCCCCCEEEEEeCCCCCccCCCceEEEeeCCcEEEcCCChHHccccccceEEEEE
Confidence            445555665 568889999999999999999999999 89988754443333445689999999887      8999999


Q ss_pred             EEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeec-CC--CeEEEEeCCEeccC--CCCCCcee-ecC
Q psy11701        106 VSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PE--PEIHWVHNGKPISQ--APPNPRRK-VGP  179 (745)
Q Consensus       106 ~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~--~~v~W~~~g~~~~~--~~~~~~~~-~~~  179 (745)
                      |.|..|...+..+.|.+...+.+...+....+.+|+++.|.|.+.+. +.  +.+.|++++..+..  .....+.. ..+
T Consensus       119 a~n~~G~~~S~~~~v~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~~~~  198 (816)
T 3dmk_A          119 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS  198 (816)
T ss_dssp             EEETTEEEEEEEEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBSSCBTTTEEECTT
T ss_pred             EecCcceEEccceEEEEEEccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEeccccCCCceEEEecC
Confidence            99999998888888888878877777888889999999999998653 22  58999998865431  11233433 356


Q ss_pred             ceEEEccCCCCCC-EEEEEEEEeCCceEE-E---EEEEEEee----cCCeeeeCC--CceEEecCceEEEEEEEeecCCC
Q psy11701        180 NRITIENLRKSDT-GNYGCNATNSLGYVY-K---DVYVNVLA----HAPEITEAP--KDEYTVDGKTVVLTCRVFGAPKP  248 (745)
Q Consensus       180 ~~L~i~~v~~~d~-G~Y~C~~~~~~g~~~-~---~~~l~v~~----~~p~~~~~~--~~~~v~~g~~~~l~C~~~~~p~~  248 (745)
                      +.|.|.+++.+|+ |.|+|.+.+...... .   ...+.+..    .+|.+...+  ....+..|+.++|.|.+.+.|.+
T Consensus       199 g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p  278 (816)
T 3dmk_A          199 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP  278 (816)
T ss_dssp             SCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCCCBCSSCC
T ss_pred             ceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEEeeecCCC
Confidence            7999999999998 999999997654322 1   13444432    134443222  34567899999999999999999


Q ss_pred             eEEEeeCCEEc-------cCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEec
Q psy11701        249 EVNWIHNQKEL-------TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEA  321 (745)
Q Consensus       249 ~i~W~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~  321 (745)
                      .+.|++++...       ...+.. ...++|.|.+++.+|+|.|+|.|.|..|.......|.|..++.+...|....+..
T Consensus       279 ~v~W~k~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~  357 (816)
T 3dmk_A          279 VFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF  357 (816)
T ss_dssp             EEEEEEECTTSSCEEECCCSSSEE-EETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCT
T ss_pred             eEEEEeCCCCCccCcceecCCceE-eccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecC
Confidence            99999853211       122222 3456899999999999999999999999888888999988887777777888899


Q ss_pred             CCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEecc
Q psy11701        322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP  401 (745)
Q Consensus       322 g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~p  401 (745)
                      |+.+.|.|.+.+.|.  +.+.|++++..+..         ....|.|..+...|.|.|+|.+.|..|.......+.+...
T Consensus       358 G~~v~l~C~~~g~p~--~~v~W~k~g~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  426 (816)
T 3dmk_A          358 GRPAVFTCQYTGNPI--KTVSWMKDGKAIGH---------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR  426 (816)
T ss_dssp             TSCEEEEEEEEEECC--CEEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCS
T ss_pred             CCCEEEEEEEeccCC--CEEEEEECCEECCC---------CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccc
Confidence            999999999999876  78999999988752         2457999999999999999999999998888888877654


Q ss_pred             CCCCCCcee---EEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCC---ceeEE--EE--ccCceeEEEecccc
Q psy11701        402 LEAPSNFTL---IQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG---SIREL--IV--NKGESTTTEVDKFV  471 (745)
Q Consensus       402 p~~P~~~~~---~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~---~~~~~--~~--~~~~~~~~~i~~L~  471 (745)
                      ..+|.....   ..+..+..+.|.|.......       ..+. |..++...   .....  .+  .......+.|..+.
T Consensus       427 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~-------p~v~-W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~  498 (816)
T 3dmk_A          427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPT-------PEIS-WELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVH  498 (816)
T ss_dssp             SCCCEEEEECCCEEECSSSCEEEEEEEECSSC-------CEEE-EEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCC
T ss_pred             cCCCceEecCcceEEcCCCCEEEEEEEecCCC-------CEEE-EEECCEECCCCCCcccccEEecCCCcEEEEEEeecc
Confidence            455522111   12245678888887632111       1332 33322110   01111  11  11223468889999


Q ss_pred             cCcceeEEEEEecCCCCCCCCcceEEeCCCCCCC--CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCccc
Q psy11701        472 PASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG--TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV  549 (745)
Q Consensus       472 ~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~--~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~  549 (745)
                      ......|+|.|.|..|....+..+.+..   +|.  .+..  ........+.|.......   +.  -.+.|...+....
T Consensus       499 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---~p~~~~~~~--~~v~~G~~v~l~C~~~g~---p~--~~i~W~k~~~~l~  568 (816)
T 3dmk_A          499 ANDGGLYKCIAKSKVGVAEHSAKLNVYG---LPYIRQMEK--KAIVAGETLIVTCPVAGY---PI--DSIVWERDNRALP  568 (816)
T ss_dssp             TTTCEEEEEEEEETTEEEEEEEEEEECS---SCEECCCCC--EEEETTCCEEEECCEECS---SE--EEEEEEETTEESC
T ss_pred             ccCCEEEEEEEEECCCeEEEEEEEEEec---CCeeEccCC--eEEecCCeEEEEEEecCC---CC--CEEEEEECCeEcc
Confidence            9999999999999988765554444432   231  1112  222345667777754321   21  2566665443211


Q ss_pred             CCcccccccccCCCcceeeecCCC-CCccEEEEEEEEecCCCCC
Q psy11701        550 GPLLERLPYISDPTTTSAKLAGLE-PSTKYRIHLAGYTKAGDGA  592 (745)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~l~~L~-p~t~Y~~~V~a~n~~G~g~  592 (745)
                      .....   .+  .....+.|.++. ......++..|.|..|.+.
T Consensus       569 ~~~~~---~~--~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~  607 (816)
T 3dmk_A          569 INRKQ---KV--FPNGTLIIENVERNSDQATYTCVAKNQEGYSA  607 (816)
T ss_dssp             CSTTE---EE--CTTSEEEESSCCHHHHCEEEEEEEEESSSCEE
T ss_pred             cCCce---EE--ecCCeEEEEecCccccCEEEEEEEEECCCcee
Confidence            11100   01  122467788886 5667778888999988543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=9.6e-41  Score=375.75  Aligned_cols=454  Identities=17%  Similarity=0.163  Sum_probs=331.2

Q ss_pred             CceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCC-CCEEEEEEEEeCCceEEEE-EEEEE---eec
Q psy11701        233 GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA-DSGEYTCFARNKLGTAQGS-GSLTV---KEH  307 (745)
Q Consensus       233 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~n~~g~~~~~-~~l~v---~~~  307 (745)
                      ...+.|.|.+.|.|.+.+.|.++|..+..-+     .+.+.|..+... ..+.|.|.+.+..|..... ..+.+   ..+
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~-----~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~  165 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWN-----RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRT  165 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCE-----EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSS
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCcee-----EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccc
Confidence            4589999999999999999999997764321     234556554233 3478899887777764322 22221   134


Q ss_pred             ceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEE-Ee--eCCeeccCCCCCeEEEcC---CeEEEEecCCCCCCEEEEE
Q psy11701        308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV-WL--RGSEPIDFESEPRFVQSN---DYSLTVTKSSELDSGQYTC  381 (745)
Q Consensus       308 p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~-W~--~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~c  381 (745)
                      |.+. .+....+..|+.+.|.|.+.+.|.+.  +. |+  +++..+...  .......   .+.|.|.++...|.|.|+|
T Consensus       166 p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~--i~~W~~~~~g~~l~~~--~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c  240 (731)
T 2v5y_A          166 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAG--DRLWLQGIDVRDAPLK--EIKVTSSRRFIASFNVVNTTKRDAGKYRC  240 (731)
T ss_dssp             CEEC-CCCCEEEETTSCEEEEEEEESCCCTT--CEEEEEESSSCCEEEE--EEEECCSSEEEEEEEECSCCTTTCEEEEE
T ss_pred             cccc-cccceEEeCCCcEEEEEEeCCCCCCc--eeEEEecCCCcccccc--ceEEeccccceEEEEEcccccccCeEEEE
Confidence            5555 56678899999999999999998754  44 77  677655421  1111111   2689999999999999999


Q ss_pred             EEEeCCce-EEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccC
Q psy11701        382 RAQTELDF-IEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG  460 (745)
Q Consensus       382 ~a~n~~g~-~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~  460 (745)
                      .|.|..|. ....+.|.+..+|.+|..+.+.. .+.+++.|.|.++ ...+++++.+|.|+|+....   .+..+.  ..
T Consensus       241 ~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~-~~~~~v~l~w~~~-~~~g~~~i~~Y~v~~~~~~~---~~~~~~--~~  313 (731)
T 2v5y_A          241 MIRTEGGVGISNYAELVVKEPPVPIAPPQLAS-VGATYLWIQLNAN-SINGDGPIVAREVEYCTASG---SWNDRQ--PV  313 (731)
T ss_dssp             EEEETTEEEECCCEEEEEECCCCBSSCCEEEE-ECSSCEEEECCCS-SBSSCSCCCEEEEEEEESSS---SCEEEE--EC
T ss_pred             EEECCCCCcceeeEEEEEecCCCCCCCcceec-cCCceEEEEeCCc-ccCCCCccEEEEEEEEECCC---CceEEe--cc
Confidence            99999997 56678899999999988888877 7889999999974 33455789999999877533   233333  24


Q ss_pred             ceeEEEecccccCcceeEEEEEe--cCCCCCCCCcceEEeCCCCCC-CCCCceeEEEcCCceEEEEeeCCCC--CCCcee
Q psy11701        461 ESTTTEVDKFVPASKNFARVLAF--NGAYNGPPSEIISFVTPEGVP-GTVQSLEAIPLGSSAFYLKWVKPEQ--PNGVLM  535 (745)
Q Consensus       461 ~~~~~~i~~L~~~~~Y~~~V~a~--n~~G~g~~S~~~~~~t~~~~P-~~p~~~~~~~~~~~~i~l~W~~p~~--~~g~i~  535 (745)
                      ....++|.+|.+++.|.|+|.|.  |..|.+.+|..+.++|.+..| .+|.++.+...+.++|.|+|++|..  .++.+.
T Consensus       314 ~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~  393 (731)
T 2v5y_A          314 DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSY  393 (731)
T ss_dssp             CSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSC
T ss_pred             CcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceee
Confidence            55889999999999999999999  999999999989898887666 7899999999999999999999864  356789


Q ss_pred             eEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCC-C---CC
Q psy11701        536 GYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNV-E---GR  611 (745)
Q Consensus       536 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~-~---~~  611 (745)
                      +|.|+|+......+..+....... ......++|.+|.|++.|.|+|.|+|..|.|+ |..+...+....+.. +   ..
T Consensus       394 ~y~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~~P~~p~~~~~~  471 (731)
T 2v5y_A          394 NLTVHYCYQVGGQEQVREEVSWDT-ENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESIQ  471 (731)
T ss_dssp             EEEEEEEEESSSSEEEEEEEECCS-SCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCCCCCCCCCTTTCE
T ss_pred             eEEEEEEEccCCCCccceeEEEEe-cCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccCCCCCCCCcceEE
Confidence            999999887643222221100112 45678999999999999999999999999985 655544433222111 1   10


Q ss_pred             C-CCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCC
Q psy11701        612 G-STPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGS  690 (745)
Q Consensus       612 ~-~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~  690 (745)
                      . ...+++.|+|++|.  ..+|.|.+|.|.|+..........                                  .. .
T Consensus       472 ~~~~~~si~l~W~~P~--~~~g~i~~Y~V~~~~~~~~~~~~~----------------------------------~~-~  514 (731)
T 2v5y_A          472 GSTFEEKIFLQWREPT--QTYGVITLYEITYKAVSSFDPEID----------------------------------LS-N  514 (731)
T ss_dssp             EEEETTEEEEECCCCS--CCSSCCCEEEEEEEEEEECC---C----------------------------------CC-C
T ss_pred             eeecCCeEEEEEcCCC--CCCCCccceEEEEEECcCCCcccc----------------------------------cc-C
Confidence            1 12578999999764  468899999999986532111000                                  00 0


Q ss_pred             eEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCCCCc
Q psy11701        691 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGGT  743 (745)
Q Consensus       691 ~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~~~~  743 (745)
                      ........++.+++.|.+|.|++.|.|+|+|.|.+|.|++|+ +.++|..+++
T Consensus       515 ~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~T~~~~P  566 (731)
T 2v5y_A          515 QSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFTTKISAP  566 (731)
T ss_dssp             CEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE-EEEECCCCCC
T ss_pred             cceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc-cEEEcCCCCC
Confidence            011222356788999999999999999999999999999995 8888876553

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=5.1e-41  Score=351.10  Aligned_cols=358  Identities=23%  Similarity=0.299  Sum_probs=281.4

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEee-cCCCeeEEEECCEecCCCC-CeEeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGG-TPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~~i~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      |+.+...|.+..+.+|++++|.|.+.+ .|.+.+.|+|+|..|.... ++.....+++|.|.+++.+|+|.|+|.+.+..
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   85 (395)
T 1bih_A            6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   85 (395)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCC
Confidence            555677889999999999999999998 7889999999999987654 45555566789999999999999999999988


Q ss_pred             eeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCC---EeccCC-CCCCce-eecCceEEE
Q psy11701        111 GEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNG---KPISQA-PPNPRR-KVGPNRITI  184 (745)
Q Consensus       111 g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g---~~~~~~-~~~~~~-~~~~~~L~i  184 (745)
                      |...+..+.|.|...+.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++   ...... ....+. ...++.|.|
T Consensus        86 g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  165 (395)
T 1bih_A           86 GVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYF  165 (395)
T ss_dssp             EEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEE
T ss_pred             CeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEE
Confidence            876654455555443222334556778899999999996 78899999999986   222111 112232 234678999


Q ss_pred             ccCCCCCCE---EEEEEEEeCCceEEEEEEEEE---ee---------cCCeeeeCCCceEEecCceEEEEEEEeecCCCe
Q psy11701        185 ENLRKSDTG---NYGCNATNSLGYVYKDVYVNV---LA---------HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE  249 (745)
Q Consensus       185 ~~v~~~d~G---~Y~C~~~~~~g~~~~~~~l~v---~~---------~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~  249 (745)
                      .+++.+|+|   .|+|.+.|..+..........   ..         .+|.+  .+....+.+|+.++|.|.+.+.|.+.
T Consensus       166 ~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~  243 (395)
T 1bih_A          166 TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGY  243 (395)
T ss_dssp             EEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCC
T ss_pred             EEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCe
Confidence            999999999   999999998887443322211   11         12222  35667889999999999999999999


Q ss_pred             EEEeeCCEEccCc---eEEEe---ecCcEEEcccCCCCCEEEEEEEEeCCceEEE-EEEEEEeecceeecCCCc-EEEec
Q psy11701        250 VNWIHNQKELTGG---RYTIL---ETGDLKITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKEHTHITDQPED-YEVEA  321 (745)
Q Consensus       250 i~W~~~~~~~~~~---~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~-~~~l~v~~~p~~~~~p~~-~~~~~  321 (745)
                      +.|++++..+...   ++...   ....|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|.+...+.. ..+..
T Consensus       244 i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~  323 (395)
T 1bih_A          244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQ  323 (395)
T ss_dssp             CEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECT
T ss_pred             EEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecC
Confidence            9999999887532   22221   1126999999999999999999999988654 889999999998888877 78899


Q ss_pred             CCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        322 GQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV  398 (745)
Q Consensus       322 g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v  398 (745)
                      |+.+.|.|.+.+.|.  +.+.|++++..+...   ++.... +.|.|..+...|.|.|+|.|.|..|.....+.|.|
T Consensus       324 g~~~~l~C~~~g~p~--p~v~W~~~g~~~~~~---~~~~~~-~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          324 GQDVTIPCKVTGLPA--PNVVWSHNAKPLSGG---RATVTD-SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             TSCEEEECEEEEESC--CCCEEEETTEECCSS---SEEEET-TEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCeEEEEEEECcccC--CeeEEEECCEECCCC---ceEEEC-CEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            999999999999887  569999999987632   444333 48999999999999999999999999988888876

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=4.8e-41  Score=349.98  Aligned_cols=354  Identities=16%  Similarity=0.233  Sum_probs=246.0

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEecc-CCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGN-YGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      ++..+..+.|.+|+++.|.|.+.|.|.+.|.|++++..+.....+.... ...+|.|.+++.+|+|.|+|.|.|..|...
T Consensus        51 ~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~  130 (423)
T 3qs7_E           51 TVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT  130 (423)
T ss_dssp             -----CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEE
T ss_pred             ceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEE
Confidence            3456668999999999999999999999999999998876433322111 123699999999999999999999887765


Q ss_pred             EEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCC--CceeecCceEEEccCCCCCC
Q psy11701        115 SYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN--PRRKVGPNRITIENLRKSDT  192 (745)
Q Consensus       115 ~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~  192 (745)
                       ..+.|.|..+|.+.. .....+..|+.+.|.|.+.|.|.|.++|+|++..+......  .........|     ...|+
T Consensus       131 -~~~~l~V~~~p~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l-----~~~d~  203 (423)
T 3qs7_E          131 -ILFTVSIRNTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-----HELFG  203 (423)
T ss_dssp             -EEEEEEEC-----CE-EEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEE-----CCCCS
T ss_pred             -EEEEEEEecCccccc-cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEE-----ecccC
Confidence             678888887665421 12223567888999999999999999999998765321110  0111111122     57899


Q ss_pred             EEEEEEEEeCCceEEEE-EEEEEeecCCeeeeCCCceEEecCceEEEEEEEee-cCCCeEEEeeCCEEccCceEE-----
Q psy11701        193 GNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG-APKPEVNWIHNQKELTGGRYT-----  265 (745)
Q Consensus       193 G~Y~C~~~~~~g~~~~~-~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~-----  265 (745)
                      |.|+|.|.|..|..... +.|.|.. +|.+  .+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+......     
T Consensus       204 G~Y~C~A~N~~G~~~~~~~~l~V~~-~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~  280 (423)
T 3qs7_E          204 TDIRCCARNELGRECTRLFTIDLNQ-TPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY  280 (423)
T ss_dssp             SCEEEEEECSSCEEEEECEEEESSS-CCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEE
T ss_pred             eEEEEEEEcCCCCcceeeEEEEEec-CCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccc
Confidence            99999999999876553 5666653 3333  455678899999999999998 667899999999877543211     


Q ss_pred             -----EeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCC--CcEEEecCCeEEEEEEEEecCCCC
Q psy11701        266 -----ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP--EDYEVEAGQSATFRCNAVSDPSLK  338 (745)
Q Consensus       266 -----~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p--~~~~~~~g~~~~l~C~~~~~~~~~  338 (745)
                           ....+.|.|.++..+|+|.|+|.|.|.   ....+.|.|..+|.+...+  ....+..|+.+.|.|.+.+.|.  
T Consensus       281 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~--  355 (423)
T 3qs7_E          281 STNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ--  355 (423)
T ss_dssp             ETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESC--
T ss_pred             cCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCC--
Confidence                 223347999999999999999999887   6778889998888766555  3455678999999999999987  


Q ss_pred             cEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCCCCCC
Q psy11701        339 LSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN  407 (745)
Q Consensus       339 ~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P~~  407 (745)
                      +.+.|++++..+.....  . ......+.+......|.|.|+|.|.|..|....++.|.+..+|++|..
T Consensus       356 p~i~W~k~g~~l~~~~~--~-~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~~  421 (423)
T 3qs7_E          356 IRCTWTFSRKSFPCEQK--G-LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHH  421 (423)
T ss_dssp             CEEEEEETTEEEECBCC--B-CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----------
T ss_pred             CeEEEEECCEECCCccc--c-ccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCccccc
Confidence            78999999998863210  0 001122323556778999999999999999999999999988888754

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=5.1e-41  Score=364.35  Aligned_cols=350  Identities=17%  Similarity=0.242  Sum_probs=283.3

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      |+.+...+.+..+.+|++++|.|.+.+    .+.|+|++.++.      ......+|.|.+++.+|+|.|+|.+.+  |.
T Consensus        36 pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~------~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g~  103 (524)
T 2ec8_A           36 PPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET------NENKQNEWITEKAEATNTGKYTCTNKH--GL  103 (524)
T ss_dssp             CCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC------EEECSSEEEESSCCSTTCEEEEEEETT--SC
T ss_pred             CCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc------ccCccceEEEcccchhhCEEEEEeecC--Cc
Confidence            455566778899999999999999986    899999998772      234567899999999999999999988  43


Q ss_pred             eEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe-CCEeccCCCCCCcee-ecCceEEEccCCCC
Q psy11701        113 AKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRK-VGPNRITIENLRKS  190 (745)
Q Consensus       113 ~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~g~~~~~~~~~~~~~-~~~~~L~i~~v~~~  190 (745)
                        +..+.|.|..+|.+...+....+.+|+++.|.|.+.+.+.+.++|++ +|..+...   .+.. ...+.|.|.+++.+
T Consensus       104 --~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~---~~~~~~~~~~L~i~~~~~~  178 (524)
T 2ec8_A          104 --SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKD---LRFIPDPKAGIMIKSVKRA  178 (524)
T ss_dssp             --EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSS---CEEEEETTTEEEEESCCGG
T ss_pred             --ceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCC---CceeECCCccEEEeccchh
Confidence              56788899888877777888889999999999999987768999998 78777532   2332 34678999999999


Q ss_pred             CCE-EEEEEEEeCCceEEE-EEEEEEe---ecCCeeeeCCCceEEecCceEEEEEEEeecCCCe-EEEeeCCEEc--cCc
Q psy11701        191 DTG-NYGCNATNSLGYVYK-DVYVNVL---AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKEL--TGG  262 (745)
Q Consensus       191 d~G-~Y~C~~~~~~g~~~~-~~~l~v~---~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~--~~~  262 (745)
                      |+| .|+|.+.|..+.... .+.|.|.   ..+|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+  ...
T Consensus       179 d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~  258 (524)
T 2ec8_A          179 YHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEK  258 (524)
T ss_dssp             GTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEE
T ss_pred             hCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccc
Confidence            999 999999988665533 5677776   3688888888888999999999999999988876 9999998773  211


Q ss_pred             -eEE------EeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCC---CcEEEecCCeEEEEEEEE
Q psy11701        263 -RYT------ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP---EDYEVEAGQSATFRCNAV  332 (745)
Q Consensus       263 -~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p---~~~~~~~g~~~~l~C~~~  332 (745)
                       +..      ....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+...|   ....+..|+.+.|.|.+.
T Consensus       259 ~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~  338 (524)
T 2ec8_A          259 YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYE  338 (524)
T ss_dssp             EEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEE
T ss_pred             cccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEe
Confidence             111      2234579999999999999999999999998889999999888766544   367889999999999999


Q ss_pred             ecCCCCcE-EEEeeCCeeccCCCCCeEEEcC-------CeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccC
Q psy11701        333 SDPSLKLS-IVWLRGSEPIDFESEPRFVQSN-------DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPL  402 (745)
Q Consensus       333 ~~~~~~~~-i~W~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp  402 (745)
                      +.|.  +. +.|++++..+..... ++....       ...|.|..+...|.|.|+|.|.|..|.....+.|.|..+|
T Consensus       339 g~P~--p~~v~W~k~g~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  413 (524)
T 2ec8_A          339 AFPK--PEHQQWIYMNRTFTDKWE-DYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP  413 (524)
T ss_dssp             EESC--CCEEEEESSSCBCSSSBC-CEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEE
T ss_pred             ecCC--CcEEEEEECCeeccCCcc-ceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCC
Confidence            9887  45 999999988764332 222221       2589999999999999999999999998888999887654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=348.32  Aligned_cols=348  Identities=16%  Similarity=0.229  Sum_probs=250.0

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCC-cEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYG-KSLIIKHVEFSDQGSYTCEVSNGVGEAKSY  116 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~  116 (745)
                      ..+..+.|.+|++++|.|.+.+.|..++.|++++..+.....+..++.+ .+|.|.+++.+|+|.|+|.|.+..+... .
T Consensus        53 ~~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~-~  131 (527)
T 3qs9_E           53 YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT-I  131 (527)
T ss_dssp             ---CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEE-E
T ss_pred             eeeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEE-E
Confidence            3444789999999999999998888899999999987755555433222 3599999999999999999998776544 3


Q ss_pred             EEEEEEEecCeEEecCc-eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEE
Q psy11701        117 SIDLSVLAAPYFTVEPE-FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNY  195 (745)
Q Consensus       117 ~~~l~V~~~p~~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  195 (745)
                      .+.|.|.  |.+...+. ......|+.+.|.|.+.|.|.|.++|++++..+....   ......-......+...|+|.|
T Consensus       132 ~~~v~v~--~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~G~Y  206 (527)
T 3qs9_E          132 LFTVSIR--NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK---EESPAVVKKEEKVLHELFGTDI  206 (527)
T ss_dssp             EEEEEEC-------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC----------------CEEECCSEECCCCSSCE
T ss_pred             EEEEEEC--CceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCcccc---ccCCcEEEEeeeeccccCCEEE
Confidence            3455544  43332222 2234568888999999999999999999887654211   0111111122334458899999


Q ss_pred             EEEEEeCCceEEEE-EEEEEeecCCeeeeCCCceEEecCceEEEEEEEe-ecCCCeEEEeeCCEEccCceEE--------
Q psy11701        196 GCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKELTGGRYT--------  265 (745)
Q Consensus       196 ~C~~~~~~g~~~~~-~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~--------  265 (745)
                      +|.|.|..|..... +.|.|.. +|.+  .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+......        
T Consensus       207 ~C~A~N~~G~~~~~~~~l~V~~-~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~  283 (527)
T 3qs9_E          207 RCCARNELGRECTRLFTIDLNQ-TPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTN  283 (527)
T ss_dssp             EEEEECSSCEEEEECEEEESSS-CCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETT
T ss_pred             EEEEEeCCCcccceEEEEEEec-cCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccC
Confidence            99999999987665 6777764 4444  56677889999999999996 8899999999999876543211        


Q ss_pred             --EeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCC--cEEEecCCeEEEEEEEEecCCCCcEE
Q psy11701        266 --ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE--DYEVEAGQSATFRCNAVSDPSLKLSI  341 (745)
Q Consensus       266 --~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~--~~~~~~g~~~~l~C~~~~~~~~~~~i  341 (745)
                        ....+.|.|.+++.+|+|.|+|.|.|.   ....+.|.|..+|.+...+.  ...+..|+.+.|.|.+.+.|.  +.+
T Consensus       284 ~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~--p~i  358 (527)
T 3qs9_E          284 RTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ--IRC  358 (527)
T ss_dssp             TEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESC--CEE
T ss_pred             cceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCC--CEE
Confidence              123346999999999999999999887   66778888988887655543  355678999999999999987  679


Q ss_pred             EEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccC
Q psy11701        342 VWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPL  402 (745)
Q Consensus       342 ~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp  402 (745)
                      .|++++..+.....  . ......|.|..+...|.|.|+|.|.|..|.....+.|.|..+|
T Consensus       359 ~W~k~g~~l~~~~~--~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P  416 (527)
T 3qs9_E          359 TWTFSRKSFPCEQK--G-LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKP  416 (527)
T ss_dssp             EEEETTEEEECBCC--B-CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCC
T ss_pred             EEEECCEECcCCcc--c-ccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCC
Confidence            99999998863322  1 2245689999999999999999999999998888888887554

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=2.9e-38  Score=347.98  Aligned_cols=439  Identities=18%  Similarity=0.249  Sum_probs=315.5

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCC---eeEEEECCEecC--------------CCCCeEecc---C-CcEEEEccCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLP---QTIWSKDGVPIN--------------PSDRISQGN---Y-GKSLIIKHVE   95 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~---~v~W~~~~~~i~--------------~~~~~~~~~---~-~~~L~i~~~~   95 (745)
                      +..|+++.+.+|++++|.|.+.+.|.+   .+.|+|++..+.              ..+|+.+..   . ..+|.|.+++
T Consensus         4 i~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~   83 (585)
T 2ocw_A            4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS   83 (585)
T ss_pred             ccCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence            456778899999999999999887654   899999886431              123454432   2 2379999999


Q ss_pred             CCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeCCEecc----CC-
Q psy11701         96 FSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPIS----QA-  169 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~----~~-  169 (745)
                      .+|+|.|+|.|.+..+.. +..+.|.|..+|.+...+....+.+|+++.|.|.+.+. +.+.+.|+|++....    .. 
T Consensus        84 ~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~  162 (585)
T 2ocw_A           84 QDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS  162 (585)
T ss_pred             cccCEEEEEEcccCCCCc-eEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCC
Confidence            999999999999877665 46799999999999888999999999999999999864 456899999876421    00 


Q ss_pred             -----CCCCceee--cC-----ceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEE
Q psy11701        170 -----PPNPRRKV--GP-----NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVV  237 (745)
Q Consensus       170 -----~~~~~~~~--~~-----~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~  237 (745)
                           ....+...  ..     ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+|      ....+.+|+.++
T Consensus       163 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p------~~~~~~~G~~v~  236 (585)
T 2ocw_A          163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEP------ELVYEDLRGSVT  236 (585)
T ss_pred             cccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCC------ceeEEcCCCcEE
Confidence                 01122221  11     2799999999999999999999999888888888875433      344677999999


Q ss_pred             EEEEEeecCC---CeEEEe-eCCEE----c---------cCceEEEee---cC--cEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        238 LTCRVFGAPK---PEVNWI-HNQKE----L---------TGGRYTILE---TG--DLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       238 l~C~~~~~p~---~~i~W~-~~~~~----~---------~~~~~~~~~---~~--~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      |.|.+ +.+.   +.+.|+ +++..    +         ...++.+..   .+  .|.|.++..+|+|.|+|.|.|. |.
T Consensus       237 l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~  314 (585)
T 2ocw_A          237 FHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQ  314 (585)
T ss_pred             EEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CC
Confidence            99997 4443   578897 77631    1         123443332   34  6999999999999999999995 44


Q ss_pred             EE-----EEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEE--EEee--CCe--eccC-------CCCCe
Q psy11701        296 AQ-----GSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSI--VWLR--GSE--PIDF-------ESEPR  357 (745)
Q Consensus       296 ~~-----~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i--~W~~--~~~--~~~~-------~~~~~  357 (745)
                      ..     ..+.|.|..+|.+...|....+..|+.+.|.|.+.+.|.+.+.+  .|++  ++.  .+..       ....+
T Consensus       315 ~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r  394 (585)
T 2ocw_A          315 LQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGR  394 (585)
T ss_pred             ccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCC
Confidence            33     77889999999888888888899999999999999888754433  8998  775  3321       01223


Q ss_pred             EEEc---CCe--EEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCCC---CCCceeEEeecCceeEEEEEeCCCC
Q psy11701        358 FVQS---NDY--SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEA---PSNFTLIQVIDAKKAVVSWNPVSPQ  429 (745)
Q Consensus       358 ~~~~---~~~--~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~---P~~~~~~~~~~~~~v~l~W~~~~~~  429 (745)
                      +...   .++  .|.|..+...|.|.|+|.| |..|.....+.|.|..++..   |..+.+   ..+..+.|.|......
T Consensus       395 ~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v---~~G~~v~L~C~~~~~~  470 (585)
T 2ocw_A          395 LSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTA---VLGETLKVPCHFPCKF  470 (585)
T ss_pred             EEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeE---ecCCcEEEEEEecCCC
Confidence            3222   122  4999999999999999999 88898888888888753221   223332   5677899999874211


Q ss_pred             CcceeeeeEEEEEEeccCCCCce-------e-EEEE-ccCceeEEEecccccCcceeEEEEEecCCCCCCCC
Q psy11701        430 SLRGHFRGYKVQTWTEKDGEGSI-------R-ELIV-NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPS  492 (745)
Q Consensus       430 ~~~~~i~~y~i~~~~~~~~~~~~-------~-~~~~-~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S  492 (745)
                      ..   .-.+.|. |.+++.....       . ...+ .......++|.++...+...|.|.|.|..|.+...
T Consensus       471 ~~---~p~~~v~-W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  538 (585)
T 2ocw_A          471 SS---YEKYWCK-WNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETA  538 (585)
T ss_pred             CC---CccEEEE-EeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEE
Confidence            11   1123443 3333321100       0 1111 02334688999999999999999999999876543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=5.4e-38  Score=340.49  Aligned_cols=361  Identities=16%  Similarity=0.236  Sum_probs=261.4

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--EecC------------CCCCeEeccC--CcEEEEccCCCCCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VPIN------------PSDRISQGNY--GKSLIIKHVEFSDQ   99 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~i~------------~~~~~~~~~~--~~~L~i~~~~~~d~   99 (745)
                      ++..|....+.+|++++|.|.+.+.|.+.+.|+|++  ..+.            ...|+.....  ..+|.|.+++.+|+
T Consensus         3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (523)
T 2rcj_C            3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE   82 (523)
T ss_pred             ccccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence            345677889999999999999998899999999974  2211            1245554332  34899999999999


Q ss_pred             EEEEEEEEeCCeee--EEEEEEEEE----EecCeEEecCceeEeeCCCeEEEEEEEeecCCC--eEEEEeCCEeccCCCC
Q psy11701        100 GSYTCEVSNGVGEA--KSYSIDLSV----LAAPYFTVEPEFINAAEEETVTFECKASGLPEP--EIHWVHNGKPISQAPP  171 (745)
Q Consensus       100 G~Y~C~~~~~~g~~--~~~~~~l~V----~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~--~v~W~~~g~~~~~~~~  171 (745)
                      |.|+|.|.+..|..  ....+.|.|    ..+|.+...+....+.+|+.+.|.|.+.|.|++  .++|+|+|..+.....
T Consensus        83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~  162 (523)
T 2rcj_C           83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVE  162 (523)
T ss_pred             EEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceE
Confidence            99999999876532  224467777    457777777777777899999999999987654  9999999988864321


Q ss_pred             CCce-eec------CceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE---eecCCeeeeCCCceEEecCceEEEEEE
Q psy11701        172 NPRR-KVG------PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV---LAHAPEITEAPKDEYTVDGKTVVLTCR  241 (745)
Q Consensus       172 ~~~~-~~~------~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v---~~~~p~~~~~~~~~~v~~g~~~~l~C~  241 (745)
                      .... ...      .+.|.|.++..+|+|.|+|.|.|..+.....+.+.+   ...+|.+...+....+.+|+.++|.|.
T Consensus       163 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~  242 (523)
T 2rcj_C          163 TTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCL  242 (523)
T ss_pred             eccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEE
Confidence            1100 111      236999999999999999999999887655554432   123555554444455678999999999


Q ss_pred             Eeec-CCC-eEEEeeCCEEccCce--EEEee------cCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeeccee-
Q psy11701        242 VFGA-PKP-EVNWIHNQKELTGGR--YTILE------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI-  310 (745)
Q Consensus       242 ~~~~-p~~-~i~W~~~~~~~~~~~--~~~~~------~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~-  310 (745)
                      +.+. |.+ .+.|++++..+....  .....      ...|.|.++..+| |.|+|.|.|..|.......+.+...|.+ 
T Consensus       243 ~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~  321 (523)
T 2rcj_C          243 VKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVF  321 (523)
T ss_pred             EeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEE
Confidence            9886 766 899999987643211  01111      2379999999999 9999999999998777777776655554 


Q ss_pred             ecCCCcEE-EecCCeEEEEEEEEecCCC--CcEEEEeeCCeeccCCCCCeEEEcC------CeEEEEecCCCCCCEEEEE
Q psy11701        311 TDQPEDYE-VEAGQSATFRCNAVSDPSL--KLSIVWLRGSEPIDFESEPRFVQSN------DYSLTVTKSSELDSGQYTC  381 (745)
Q Consensus       311 ~~~p~~~~-~~~g~~~~l~C~~~~~~~~--~~~i~W~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~~~g~y~c  381 (745)
                      ...|.... +..|+.+.|.|.+.+.++.  .+.+.|++++..+............      .+.|.|..+...|.|.|+|
T Consensus       322 ~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C  401 (523)
T 2rcj_C          322 LFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKC  401 (523)
T ss_pred             ecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEE
Confidence            33343333 6789999999999987643  3699999999887643221111111      1357888888899999999


Q ss_pred             EEEeCCceEEEEEEEE
Q psy11701        382 RAQTELDFIEAQATLT  397 (745)
Q Consensus       382 ~a~n~~g~~~~~~~l~  397 (745)
                      .|.|..+.......+.
T Consensus       402 ~a~n~~~~~~~~~~~~  417 (523)
T 2rcj_C          402 KVSNKALPAPIEKTIS  417 (523)
T ss_pred             EEeCCCCCCceeEEEE
Confidence            9999877655444444

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=1.1e-39  Score=354.00  Aligned_cols=362  Identities=19%  Similarity=0.224  Sum_probs=270.4

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEE-CCEecCCCCCeEeccCCcEEEEccCCCCCCE-EEEEEEEeCC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYGKSLIIKHVEFSDQG-SYTCEVSNGV  110 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~-~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~  110 (745)
                      |..+ ..+.+..+.+|++++|.|.+.+.|.+.+.|++ ||..|..+.++.... .+.|.|.+++.+|+| .|+|.+.+..
T Consensus       115 ~~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~-~~~L~i~~~~~~d~G~~Y~C~a~n~~  192 (524)
T 2ec8_A          115 AKLF-LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDP-KAGIMIKSVKRAYHRLCLHCSVDQEG  192 (524)
T ss_dssp             SCSB-CCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEET-TTEEEEESCCGGGTTCEEEEEEC---
T ss_pred             Cccc-ccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECC-CccEEEeccchhhCCceEEEEEEECC
Confidence            3444 77888899999999999999987778999998 898888777776644 447999999999999 9999999876


Q ss_pred             eeeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEeecCCCe-EEEEeCCEec--cCCCC----CCceeecC
Q psy11701        111 GEAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPI--SQAPP----NPRRKVGP  179 (745)
Q Consensus       111 g~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~-v~W~~~g~~~--~~~~~----~~~~~~~~  179 (745)
                      +...+..+.|.|.    .+|.+...+....+.+|+++.|.|.+.+.|.+. +.|++++..+  .....    ........
T Consensus       193 ~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (524)
T 2ec8_A          193 KSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQ  272 (524)
T ss_dssp             -CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEE
T ss_pred             ceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceE
Confidence            6655556888886    788998999988999999999999999988886 9999999874  21100    00012345


Q ss_pred             ceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCC---ceEEecCceEEEEEEEeecCCCe-EEEeeC
Q psy11701        180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPK---DEYTVDGKTVVLTCRVFGAPKPE-VNWIHN  255 (745)
Q Consensus       180 ~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~---~~~v~~g~~~~l~C~~~~~p~~~-i~W~~~  255 (745)
                      +.|.|.++..+|+|.|+|.|.|..|.....+.|.|.. +|.+...+.   ...+.+|+.++|.|.+.+.|.+. +.|+++
T Consensus       273 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~  351 (524)
T 2ec8_A          273 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD-KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYM  351 (524)
T ss_dssp             EEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEES-SCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESS
T ss_pred             EEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEec-cCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEEC
Confidence            7899999999999999999999999988888999885 666665443   57889999999999999999998 999999


Q ss_pred             CEEccCce--EEEee-------cCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEE
Q psy11701        256 QKELTGGR--YTILE-------TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSAT  326 (745)
Q Consensus       256 ~~~~~~~~--~~~~~-------~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~  326 (745)
                      +..+....  +....       ...|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+...+.   ...|   .
T Consensus       352 g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~---~~~g---~  425 (524)
T 2ec8_A          352 NRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDR---LVNG---M  425 (524)
T ss_dssp             SCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEEEC---CSSS---C
T ss_pred             CeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeeccc---CcCc---E
Confidence            98876442  33222       24799999999999999999999999999999999998887765443   2344   9


Q ss_pred             EEEEEEecCCCCcEEEEeeCCeeccC-------CCC--CeEEEcCCeEEE----EecCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        327 FRCNAVSDPSLKLSIVWLRGSEPIDF-------ESE--PRFVQSNDYSLT----VTKSSELDSGQYTCRAQTELDFIEAQ  393 (745)
Q Consensus       327 l~C~~~~~~~~~~~i~W~~~~~~~~~-------~~~--~~~~~~~~~~l~----i~~~~~~~~g~y~c~a~n~~g~~~~~  393 (745)
                      |.|.+.|.|.  +.+.|++++..+..       ...  ........+.+.    +......|.|.|+|.|.|..|.....
T Consensus       426 l~C~~~g~P~--p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~  503 (524)
T 2ec8_A          426 LQCVAAGFPE--PTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAY  503 (524)
T ss_dssp             EEEEEEEESC--CEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECC
T ss_pred             EEEEEEeecC--CEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEE
Confidence            9999999987  68999999765420       000  011122233333    33334589999999999999999888


Q ss_pred             EEEEEeccCCCC
Q psy11701        394 ATLTVQVPLEAP  405 (745)
Q Consensus       394 ~~l~v~~pp~~P  405 (745)
                      +.|.|..++...
T Consensus       504 ~~l~V~e~~~~~  515 (524)
T 2ec8_A          504 FNFAFKGNNKEQ  515 (524)
T ss_dssp             CCCCC-------
T ss_pred             EEEEEecCCHHH
Confidence            888887665443

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=100.00  E-value=3e-40  Score=363.79  Aligned_cols=534  Identities=16%  Similarity=0.150  Sum_probs=346.8

Q ss_pred             ecCceeEeeCCCeEEEEEEEe-------ecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        130 VEPEFINAAEEETVTFECKAS-------GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~-------~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      +.|.+..+.+|++++|.|.+.       +.+.+.|.|++||+.+...... ......+.|+|.++...|++ |+|.+...
T Consensus         8 i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~~~~-~~~~~~~~l~i~~~~~~~~~-y~C~~~~~   85 (589)
T 3l5h_A            8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYT-IINRTASSVTFTDIASLNIQ-LTCNILTF   85 (589)
T ss_dssp             CSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGGGCB-CCSSSCCBCCCCCCCSSCCC-CCCC-CCT
T ss_pred             EecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChHHcc-ccCCcEeEEEEecCCCccee-eEEecccC
Confidence            457777899999999999997       5567899999999877643211 12223568999999988865 77887632


Q ss_pred             CceEE---EEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEee-----------
Q psy11701        203 LGYVY---KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE-----------  268 (745)
Q Consensus       203 ~g~~~---~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~-----------  268 (745)
                       |...   ..+.|.+. .             ..+....|.|...+.....+.|...........|.+..           
T Consensus        86 -~~~~~~~~~~~l~v~-~-------------pP~~P~nl~c~~~~~~~~~~~W~~~~~~~~~~~y~l~~~~~~~~~~~c~  150 (589)
T 3l5h_A           86 -GQLEQNVYGITIISG-L-------------PPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCK  150 (589)
T ss_dssp             -TCC-CCCCCCCCCC--C-------------CCCCCEEEEEEEETTSCEEEEEECCSCCSSCEEEEECCBCSSSBCCCEE
T ss_pred             -CCcccEEEeEEEecc-C-------------CCCCCEeeEEEECCCceEEEEECCCCcCCcCceEEEEEEEcCCCcccCC
Confidence             2211   11122221 1             13556678888877666778887743221112222210           


Q ss_pred             -----cCcEEEc-ccCCCCCEEEEEEEEeCCceEEE-EEEEEEeecceeecCCCcEEEe----cCCeEEEEEEEEec---
Q psy11701        269 -----TGDLKIT-DVAFADSGEYTCFARNKLGTAQG-SGSLTVKEHTHITDQPEDYEVE----AGQSATFRCNAVSD---  334 (745)
Q Consensus       269 -----~~~l~i~-~~~~~d~G~Y~C~~~n~~g~~~~-~~~l~v~~~p~~~~~p~~~~~~----~g~~~~l~C~~~~~---  334 (745)
                           .....+. ++.......|+|.|.|..|.... ...+.. .....+..|..+.+.    ....+.|.|.....   
T Consensus       151 ~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~-~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~  229 (589)
T 3l5h_A          151 AKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDP-VYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV  229 (589)
T ss_dssp             CBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECG-GGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGGT
T ss_pred             CCCCCcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEcc-ccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCCe
Confidence                 0122333 34444566788999999887422 222211 112234566666662    34578888875532   


Q ss_pred             CCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEE---EEEEEEeccC----CCCCC
Q psy11701        335 PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEA---QATLTVQVPL----EAPSN  407 (745)
Q Consensus       335 ~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~---~~~l~v~~pp----~~P~~  407 (745)
                      +...+.++|...+..................+.+.++.....+.|++.|.|..|.+..   +..+.+..++    .+|..
T Consensus       230 ~~~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~  309 (589)
T 3l5h_A          230 IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSF  309 (589)
T ss_dssp             SCEEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCE
T ss_pred             eeEEEEEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcE
Confidence            2223666776554221110000000112357889999999999999999998875422   2333333332    45543


Q ss_pred             ceeE---EeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEec
Q psy11701        408 FTLI---QVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN  484 (745)
Q Consensus       408 ~~~~---~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n  484 (745)
                      +...   ...+.+++.|.|+++++...+|.+.+|.|.|+.......   .  . ......+  ..|.+++.|.|+|.|.|
T Consensus       310 ~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~~---~--~-~~~~~~~--~~l~~~~~Y~~~V~A~n  381 (589)
T 3l5h_A          310 WYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ---N--Y-TVNATKL--TVNLTNDRYLATLTVRN  381 (589)
T ss_dssp             EEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCCC---B--C-CCSSSCC--EECCCSSCCCEEEEEEB
T ss_pred             EEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCCce---e--e-ccCCceE--EEEeCCCCEEEEEEEEe
Confidence            3322   114678999999987778889999999998866544221   1  1 2223333  34889999999999999


Q ss_pred             CCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCc
Q psy11701        485 GAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT  564 (745)
Q Consensus       485 ~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~  564 (745)
                      ..|.|+++..........+|.+|.++.+... .+++.|+|++|..   .+.+|.|+|+..+........+..  +.....
T Consensus       382 ~~G~~~~s~~~~~~~~~~~~~p~~~l~~~~~-~~si~l~W~~p~~---~i~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~  455 (589)
T 3l5h_A          382 LVGKSDAAVLTIPACDFQATHPVMDLKAFPK-DNMLWVEWTTPRE---SVKKYILEWCVLSDKAPCITDWQQ--EDGTVH  455 (589)
T ss_dssp             TTBCCCCCCCCCCCTTCCCCSCCCSCEEEEC-SSSEEEECCCCSS---CCSCBCCEEEEECSSSCCCEEECC--BCSSCC
T ss_pred             CCccCCCeEEEeecccccCCCCcceEEEEEC-CCeEEEEEECCCC---CccEEEEEEEECCCCCCCccCcEE--eeCCcc
Confidence            9999998864433322234566778888775 6899999999864   799999999987654321111111  224455


Q ss_pred             ceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCC---CCCCCCCCCCcceeEEEeecCccccCCCcceEEEEE
Q psy11701        565 TSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNP---DNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFW  641 (745)
Q Consensus       565 ~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~---~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~  641 (745)
                      ..+++.+|.|++.|.|+|.|.|..|.|.++..........|   +.+.+.....+++.|+|++++....+|.|.+|.|+|
T Consensus       456 ~~~~~~~L~p~t~Y~~~V~A~~~~g~g~~~~~~~~t~~~~P~~pp~l~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~  535 (589)
T 3l5h_A          456 RTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFY  535 (589)
T ss_dssp             EEECCSCCCSSSEEEEEECBEETTEECCCEEEEEESSCCCCSSCCCCCEECCCSSCBEEBCCCCCHHHHCSCEEEEEECC
T ss_pred             eEEehhccccCcEEEEEEEEEeCCcccCCEEEEEEeccCCCCCCCeEEEeecccceEEEEecCCCHHHcCccceeEEEEE
Confidence            67788999999999999999999999998654433322222   233334456789999999887788999999999999


Q ss_pred             eccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEE
Q psy11701        642 RRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  721 (745)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A  721 (745)
                      +..++.. +                                           ....++..+.+.|.+|.|++.|.|+|+|
T Consensus       536 ~~~~~~~-~-------------------------------------------~~~~~~~~~~~~~~~L~p~t~Y~~~V~A  571 (589)
T 3l5h_A          536 RTIIGNE-T-------------------------------------------AVNVDSSHTEYTLSSLTSDTLYMVRMAA  571 (589)
T ss_dssp             BCSSCCC-C-------------------------------------------CEEECTTCCBCCBCSCCSSCCEECCEEE
T ss_pred             EeCCCCe-E-------------------------------------------EEEeCCcccEEEecCCCCCCEEEEEEEE
Confidence            8653211 0                                           0112467888999999999999999999


Q ss_pred             ecCcccCCCCcceEEeCCC
Q psy11701        722 FNGAYNGPPSEIISFVTPE  740 (745)
Q Consensus       722 ~~~~G~g~~s~~~~~~t~~  740 (745)
                      .|.+| |++|+++.|+|+.
T Consensus       572 ~n~~G-~~~S~~~~~~T~k  589 (589)
T 3l5h_A          572 YTDEG-GKDGPEFTFTTPK  589 (589)
T ss_dssp             EETTE-EEECCCCEECCCC
T ss_pred             EeCCC-CCCCCCeEEecCC
Confidence            99999 9999999999963

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=3.8e-38  Score=336.98  Aligned_cols=341  Identities=16%  Similarity=0.141  Sum_probs=239.8

Q ss_pred             eeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      .....|+.++|.|.+.|.|.|.|.|++++..+.......  ..........++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus       149 ~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V  226 (527)
T 3qs9_E          149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEES--PAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL  226 (527)
T ss_dssp             EEEECSSSSCEEEEEEESSCCEEEEEEC---------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEES
T ss_pred             cEEecCCceEEEEEEceecCCeEEEEECCCCCccccccC--CcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEE
Confidence            345678889999999999999999999887764221111  111112233456899999999999999988766688888


Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCCCC-------CceeecCceEEEccCCCCCCEE
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPN-------PRRKVGPNRITIENLRKSDTGN  194 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~~-------~~~~~~~~~L~i~~v~~~d~G~  194 (745)
                      ..+|.+  .|....+.+|+++.|.|.+. +.|.+.++|+|+|..+......       .......+.|.|.+++.+|+|.
T Consensus       227 ~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~  304 (527)
T 3qs9_E          227 NQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGY  304 (527)
T ss_dssp             SSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEE
T ss_pred             eccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeE
Confidence            887766  66788899999999999996 8899999999999877532111       0112233569999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCCeeeeCC--CceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcE
Q psy11701        195 YGCNATNSLGYVYKDVYVNVLAHAPEITEAP--KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDL  272 (745)
Q Consensus       195 Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~--~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l  272 (745)
                      |+|.|.|.   ....+.|.|.. +|.+...+  ....+.+|+.+.|.|.+.+.|.+.+.|++++..+..........+.|
T Consensus       305 Y~C~a~N~---~~~~~~L~V~~-~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L  380 (527)
T 3qs9_E          305 YTCSSSKH---PSQSALVTIVE-KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSI  380 (527)
T ss_dssp             EEEEETTE---EEEEEEEEEC---CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEE
T ss_pred             EEEEEEeC---CCceEEEEEEc-cCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEE
Confidence            99999987   56677888875 55555444  33567789999999999999999999999999886443223345689


Q ss_pred             EEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccC
Q psy11701        273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF  352 (745)
Q Consensus       273 ~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~  352 (745)
                      .|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+...+.        ...|.|.+.|.|.  +.+.|++++.....
T Consensus       381 ~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~~--------~~~l~C~a~g~P~--p~i~W~~~~~~~~~  450 (527)
T 3qs9_E          381 SKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPL--PSWTWKKCSDKSPN  450 (527)
T ss_dssp             EEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECCC--------CE---EEEECSSC--CEEEEECCC-----
T ss_pred             EEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeCC--------CCEEEEEEEEEcC--CeEEEEECCCCcCC
Confidence            9999999999999999999999999999999998887765542        2357999999987  68999987654311


Q ss_pred             CCC-----------CeEEEcC-CeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEecc
Q psy11701        353 ESE-----------PRFVQSN-DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP  401 (745)
Q Consensus       353 ~~~-----------~~~~~~~-~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~p  401 (745)
                      ...           ....... ...+.+......|.|.|+|.|.|..|.....+.|.+..|
T Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p  511 (527)
T 3qs9_E          451 CTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP  511 (527)
T ss_dssp             CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC-----
T ss_pred             CccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCC
Confidence            000           0000111 112333333456999999999999999999888866543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=6.3e-36  Score=311.67  Aligned_cols=360  Identities=19%  Similarity=0.246  Sum_probs=270.4

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEeccCCCC--CCceee----cCceEEEccCCCCCCEEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPISQAPP--NPRRKV----GPNRITIENLRKSDTGNYG  196 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~~~~~--~~~~~~----~~~~L~i~~v~~~d~G~Y~  196 (745)
                      +|.+.. +.+..+.+|+++.|.|.+.|.|.+.++|+|+  |..+.....  ..+...    ..+.|.|.+++.+|+|.|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            356655 5667788999999999999999999999999  888864321  223322    3468999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCc---eEEEeec---C
Q psy11701        197 CNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILET---G  270 (745)
Q Consensus       197 C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~---~  270 (745)
                      |.|.|..|.....+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...   ++.....   .
T Consensus        80 C~a~n~~g~~~~~~~l~V~~-~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~  158 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDIEY-APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKM  158 (389)
T ss_dssp             EEEECSSCEEEEEEEEEEEE-EEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCE
T ss_pred             EEEEeCCCCcceEEEEEEEe-CCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEE
Confidence            99999999988889999985 777776666667889999999999999999999999999988643   3444333   3


Q ss_pred             cEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEE--ecCCeEEEEEEEEec----CCCCcEEEEe
Q psy11701        271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEV--EAGQSATFRCNAVSD----PSLKLSIVWL  344 (745)
Q Consensus       271 ~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~--~~g~~~~l~C~~~~~----~~~~~~i~W~  344 (745)
                      .|.|.++...|.|.|+|.|.|..|.....+.+.+...|   ..|....+  ..+..+.|.|.....    +...+.+.|.
T Consensus       159 ~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P---~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~  235 (389)
T 2jll_A          159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP---SSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVK  235 (389)
T ss_dssp             EEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCC---CCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCC---CCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEE
Confidence            69999999999999999999999998888888876654   23323322  345789999975322    2223578888


Q ss_pred             eCCeeccCCCCCeEEE-cCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEec----cCCCCCCceeEEeecCcee
Q psy11701        345 RGSEPIDFESEPRFVQ-SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV----PLEAPSNFTLIQVIDAKKA  419 (745)
Q Consensus       345 ~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~----pp~~P~~~~~~~~~~~~~v  419 (745)
                      +.+....    ..... .....+.|.++...+.|.|+|.|.|..|.+..+..+.+..    +|.+| .+.... .+.+++
T Consensus       236 ~~~~~~~----~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p-~~~~~~-~~~~~v  309 (389)
T 2jll_A          236 EVASEIW----KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP-SIHGQP-SSGKSF  309 (389)
T ss_dssp             ETTCSCC----EEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCC-CEEEEE-ETTTEE
T ss_pred             ECCCccc----EEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCC-cccccc-CcCCEE
Confidence            8764322    11111 2335799999999999999999999999766554444443    56666 455555 688999


Q ss_pred             EEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeC
Q psy11701        420 VVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT  499 (745)
Q Consensus       420 ~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t  499 (745)
                      .|+|.++  .+.++++.+|.|+|+......+. ....+ ......++|.+|.+++.|.|+|+|.|..|.|++|.. .++|
T Consensus       310 ~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~~-~~~~~-~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~-~~~T  384 (389)
T 2jll_A          310 KLSITKQ--DDGGAPILEYIVKYRSKDKEDQW-LEKKV-QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY-EFSM  384 (389)
T ss_dssp             EEEECCC--CCCSSCCCEEEEEEEC-----CC-BCCEE-CTTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEE-EEEC
T ss_pred             EEEEECC--CCCCCcccEEEEEEEeCCCCcce-eEeec-cCCcceEEeCCcCCCCEEEEEEEEEcCCcCCCceee-EecC
Confidence            9999974  45678899999999875443222 12334 556778999999999999999999999999999864 6776


Q ss_pred             C
Q psy11701        500 P  500 (745)
Q Consensus       500 ~  500 (745)
                      .
T Consensus       385 ~  385 (389)
T 2jll_A          385 P  385 (389)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=3e-37  Score=328.11  Aligned_cols=408  Identities=13%  Similarity=0.131  Sum_probs=280.0

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCee-----EEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQT-----IWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v-----~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      +.+.|++..+.+|++++|.|.+.| |.|.+     .|+|++..+.. .+      ...|.|.+++. |+| |+|.+.+..
T Consensus         2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~-~~------~~~l~i~~v~~-d~g-Y~C~a~~~~   71 (450)
T 1z7z_I            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG-NN------RKVYELSNVQE-DSQ-PMCYSNCPD   71 (450)
T ss_dssp             CEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST-TT------EEEEEEEEECS-CBC-CEEEEEETT
T ss_pred             cccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC-CC------ceEEEEEeccc-CCe-eEEEEeCCC
Confidence            456788999999999999999998 88888     89998875542 22      23799999987 999 999997654


Q ss_pred             eeeEEEEEEEEEEecCeEE-ecCceeEeeCCCeEEEEEEEeecCCC---eEEEEeCCEeccCCCCCCceeecCceEEEcc
Q psy11701        111 GEAKSYSIDLSVLAAPYFT-VEPEFINAAEEETVTFECKASGLPEP---EIHWVHNGKPISQAPPNPRRKVGPNRITIEN  186 (745)
Q Consensus       111 g~~~~~~~~l~V~~~p~~~-~~~~~~~v~~G~~~~l~C~~~~~p~~---~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~  186 (745)
                      +. .+..+.|.|..+|.+. ..+....+.+|+++.|.|.+.+.|++   .++|+|+|..+.......  ...++.|.|.+
T Consensus        72 ~~-~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~--~~~~~~L~i~~  148 (450)
T 1z7z_I           72 GQ-STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG--EPAEVTTTVLV  148 (450)
T ss_dssp             EE-EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT--TTEEEEEEEEC
T ss_pred             Cc-ceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc--cccceEEEEEe
Confidence            44 4477889998888776 56777889999999999999998887   899999999886432111  11235899999


Q ss_pred             CCCCCCEEEEEEEEeCCceEE--------EEEEEEEeec---CCeeeeCCCceEEecCceEEEEEEEeec-C--CCeEEE
Q psy11701        187 LRKSDTGNYGCNATNSLGYVY--------KDVYVNVLAH---APEITEAPKDEYTVDGKTVVLTCRVFGA-P--KPEVNW  252 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g~~~--------~~~~l~v~~~---~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p--~~~i~W  252 (745)
                      +..+|+|.|+|.|.|..|...        ....+.|...   +|.+..   ...+.+|+.++|.|.+.+. |  .+.+.|
T Consensus       149 ~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W  225 (450)
T 1z7z_I          149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHL  225 (450)
T ss_dssp             CSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEE
T ss_pred             eccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEE
Confidence            999999999999999866321        2234444422   232221   1678899999999999998 6  679999


Q ss_pred             eeCCEEccCceEEEeecCcEEEc---ccCCCCCE--EEEEEEEeCCceEEEEEEEEEee--cceeecCCCcEEEecCCeE
Q psy11701        253 IHNQKELTGGRYTILETGDLKIT---DVAFADSG--EYTCFARNKLGTAQGSGSLTVKE--HTHITDQPEDYEVEAGQSA  325 (745)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G--~Y~C~~~n~~g~~~~~~~l~v~~--~p~~~~~p~~~~~~~g~~~  325 (745)
                      ++++..+.. +..... ..+.+.   +++..|+|  .|+|.+.|..|.......|.|..  +|.+...  ...+..|+.+
T Consensus       226 ~~~~~~~~~-~~~~~~-~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~--~~~v~~G~~v  301 (450)
T 1z7z_I          226 ALGDQRLNP-TVTYGN-DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT--KPEVSEGTEV  301 (450)
T ss_dssp             EETTEECCC-EEEEET-TEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES--CSEEETTCEE
T ss_pred             eCCCEeCCc-eEEecC-CceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC--CeeEeCCCcE
Confidence            999988865 332222 222222   67889999  99999999999988888888876  4444332  3478899999


Q ss_pred             EEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCc-e---EEEEEEEEEecc
Q psy11701        326 TFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELD-F---IEAQATLTVQVP  401 (745)
Q Consensus       326 ~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g-~---~~~~~~l~v~~p  401 (745)
                      .|.|.+.  |  .+.+.|  ++..+..       ......|.|..+...|.|.|+|.|.|..+ .   ....+.|.|..+
T Consensus       302 ~l~C~~~--p--~p~i~W--~g~~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~  368 (450)
T 1z7z_I          302 TVKCEAH--P--RAKVTL--NGVPAQP-------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG  368 (450)
T ss_dssp             EEEEEC-----------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEE
T ss_pred             EEEEecC--C--CCEeEE--CCEEcCC-------CCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecC
Confidence            9999997  4  378899  6655521       11234789999999999999999997655 3   336677788766


Q ss_pred             CCCCCCc--eeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        402 LEAPSNF--TLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       402 p~~P~~~--~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      |......  ....+..+..+.|.|.....+.       -.| .|.+++.      ..+ .. ...+   .+...+...|+
T Consensus       369 P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~-------p~i-~W~~~g~------~~~-~~-g~~~---~v~~~d~G~Y~  429 (450)
T 1z7z_I          369 PRLDERDCPGNWTWPENSQQTPMCQAWGNPL-------PEL-KCLKDGT------FPL-PI-GESV---TVTRDLEGTYL  429 (450)
T ss_dssp             EECCSTTSCSEEEEETTCEECCCCCCEEESC-------CEE-EEEETTT------EEC-CT-TSCE---ECCGGGCEEEE
T ss_pred             CceeeccCCCceeEcCCCeEEEEEecccCCC-------CcE-EEEECCc------ccC-CC-CCeE---eEehhhCeEEE
Confidence            6443222  1112256778888886521111       123 3444332      111 11 1122   46667888999


Q ss_pred             EEEecCCCCCCCCcce
Q psy11701        480 VLAFNGAYNGPPSEII  495 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~  495 (745)
                      |.|.|..|....+..+
T Consensus       430 C~a~N~~G~~~~~~~l  445 (450)
T 1z7z_I          430 CRARSTQGEVTREVTV  445 (450)
T ss_dssp             EEEEETTEEEEEEEEE
T ss_pred             EEEEeCCCceeEEEEE
Confidence            9999998876444333

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=1.1e-35  Score=327.48  Aligned_cols=358  Identities=21%  Similarity=0.282  Sum_probs=268.0

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeec-CCCeeEEEECCEecC----C---------CCCeEeccCCc-----EEEEccCC
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKDGVPIN----P---------SDRISQGNYGK-----SLIIKHVE   95 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~~~~i~----~---------~~~~~~~~~~~-----~L~i~~~~   95 (745)
                      .+...+....+.+|++++|.|.+.+. |.+.+.|+|++..+.    .         ..++.+...+.     +|.|.+++
T Consensus       114 ~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~  193 (585)
T 2ocw_A          114 GLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR  193 (585)
T ss_pred             cccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCC
Confidence            34567888899999999999999865 456899999875421    0         24444433332     79999999


Q ss_pred             CCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCC---CeEEEE-eCCEe---ccC
Q psy11701         96 FSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPE---PEIHWV-HNGKP---ISQ  168 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~---~~v~W~-~~g~~---~~~  168 (745)
                      .+|+|.|+|.|.+..|... ..+.|.|..+|     |....+.+|+.+.|.|.+.+ +.   +.+.|+ ++|..   +..
T Consensus       194 ~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~-----p~~~~~~~G~~v~l~C~~~~-~~~~~~~~~w~~~~g~~~~~~~~  266 (585)
T 2ocw_A          194 LSDAGQYLCQAGDDSNSNK-KNADLQVLKPE-----PELVYEDLRGSVTFHCALGP-EVANVAKFLCRQSSGENCDVVVN  266 (585)
T ss_pred             hhHCeEEEEEeccCCcccc-ceEEEEEccCC-----CceeEEcCCCcEEEEEEcCC-CCCCceEEEEEeCCCCCcceEEe
Confidence            9999999999998877654 66888887644     45566789999999999743 33   688997 88842   111


Q ss_pred             CC------CCCceeec----Cc--eEEEccCCCCCCEEEEEEEEeCCceEE-----EEEEEEEeecCCeeeeCCCceEEe
Q psy11701        169 AP------PNPRRKVG----PN--RITIENLRKSDTGNYGCNATNSLGYVY-----KDVYVNVLAHAPEITEAPKDEYTV  231 (745)
Q Consensus       169 ~~------~~~~~~~~----~~--~L~i~~v~~~d~G~Y~C~~~~~~g~~~-----~~~~l~v~~~~p~~~~~~~~~~v~  231 (745)
                      ..      ...+....    ++  .|.|.+++.+|+|.|+|.|.|. |...     ..+.|.|.. +|.+...+....+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~  344 (585)
T 2ocw_A          267 TLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNE-ESTIPRSPTVVKGV  344 (585)
T ss_pred             CCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEec-ccccccCCcceEEE
Confidence            10      11222221    33  7999999999999999999995 4433     667788874 77787788888899


Q ss_pred             cCceEEEEEEEeecCCCeE----EEee--CCE--Ecc----------CceEEEe---ecCc--EEEcccCCCCCEEEEEE
Q psy11701        232 DGKTVVLTCRVFGAPKPEV----NWIH--NQK--ELT----------GGRYTIL---ETGD--LKITDVAFADSGEYTCF  288 (745)
Q Consensus       232 ~g~~~~l~C~~~~~p~~~i----~W~~--~~~--~~~----------~~~~~~~---~~~~--l~i~~~~~~d~G~Y~C~  288 (745)
                      +|+.++|.|.+.+.|.+.+    .|++  ++.  .+.          ..++.+.   ..+.  |.|.+++.+|+|.|+|.
T Consensus       345 ~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~  424 (585)
T 2ocw_A          345 AGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCL  424 (585)
T ss_pred             eCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEc
Confidence            9999999999999988866    7999  776  332          2344443   2333  99999999999999999


Q ss_pred             EEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecC--CCCcEEEEeeCCeeccCCCCC----eEEE-c
Q psy11701        289 ARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP--SLKLSIVWLRGSEPIDFESEP----RFVQ-S  361 (745)
Q Consensus       289 ~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~--~~~~~i~W~~~~~~~~~~~~~----~~~~-~  361 (745)
                      | |..|.....+.|.|...+.....|....+..|+.+.|.|.+.+.+  .+.+.+.|++++..+......    .+.. .
T Consensus       425 a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~  503 (585)
T 2ocw_A          425 T-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCD  503 (585)
T ss_pred             c-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEec
Confidence            9 888888888899998755444557778889999999999997432  234789999999876432211    1222 1


Q ss_pred             ---CCeEEEEecCCCCCCEEEEEEEEeCCceEEEE-EEEEEeccC
Q psy11701        362 ---NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ-ATLTVQVPL  402 (745)
Q Consensus       362 ---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~-~~l~v~~pp  402 (745)
                         ....|.|..+...|.|.|+|.|.|..|..... +.|.|..+|
T Consensus       504 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          504 ENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             CcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence               12589999999999999999999999866544 888888776

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.9e-36  Score=320.57  Aligned_cols=337  Identities=14%  Similarity=0.207  Sum_probs=247.6

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCC---eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLP---QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~---~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      +|..+...+.+..+.+|++++|.|.+.|.|.+   .|+|+|+|.+|....... ......|.|.+++.+|+|.|+|.|.|
T Consensus        85 ~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n  163 (450)
T 1z7z_I           85 TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG-EPAEVTTTVLVRRDHHGANFSCRTEL  163 (450)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT-TTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc-cccceEEEEEeeccccCceEEEEEEc
Confidence            57777788888999999999999999998887   899999999886433221 22235899999999999999999998


Q ss_pred             CCeee-------EEEEEEEEEEec----CeEEecCceeEeeCCCeEEEEEEEeec-C--CCeEEEEeCCEeccCCCCCCc
Q psy11701        109 GVGEA-------KSYSIDLSVLAA----PYFTVEPEFINAAEEETVTFECKASGL-P--EPEIHWVHNGKPISQAPPNPR  174 (745)
Q Consensus       109 ~~g~~-------~~~~~~l~V~~~----p~~~~~~~~~~v~~G~~~~l~C~~~~~-p--~~~v~W~~~g~~~~~~~~~~~  174 (745)
                      ..|..       .+....|.|...    |.+..   ...+.+|+.+.|.|.+.|. |  .+.+.|+++|..+..     .
T Consensus       164 ~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~-----~  235 (450)
T 1z7z_I          164 DLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-----T  235 (450)
T ss_dssp             ECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC-----E
T ss_pred             ccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc-----e
Confidence            75531       112344555433    22221   1578999999999999997 7  689999999998864     2


Q ss_pred             eeecCceEEEc---cCCCCCCE--EEEEEEEeCCceEEEEEEEEEeec-CCeeeeCCCceEEecCceEEEEEEEeecCCC
Q psy11701        175 RKVGPNRITIE---NLRKSDTG--NYGCNATNSLGYVYKDVYVNVLAH-APEITEAPKDEYTVDGKTVVLTCRVFGAPKP  248 (745)
Q Consensus       175 ~~~~~~~L~i~---~v~~~d~G--~Y~C~~~~~~g~~~~~~~l~v~~~-~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~  248 (745)
                      .......+.+.   +++.+|+|  .|+|.+.|..|.....+.|.|... +|.+...  ...+.+|+.++|.|.+.  |.+
T Consensus       236 ~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~--~~~v~~G~~v~l~C~~~--p~p  311 (450)
T 1z7z_I          236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT--KPEVSEGTEVTVKCEAH--PRA  311 (450)
T ss_dssp             EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES--CSEEETTCEEEEEEEC------
T ss_pred             EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC--CeeEeCCCcEEEEEecC--CCC
Confidence            22222233322   78999999  999999999998888888888753 3444433  45888999999999997  788


Q ss_pred             eEEEeeCCEEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCc-e---EEEEEEEEEeecceeecCC--CcEEEecC
Q psy11701        249 EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLG-T---AQGSGSLTVKEHTHITDQP--EDYEVEAG  322 (745)
Q Consensus       249 ~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g-~---~~~~~~l~v~~~p~~~~~p--~~~~~~~g  322 (745)
                      .+.|  +|..+...    .....|.|.++..+|+|.|+|.|.|..+ .   ....+.|.|..+|.+...+  ....+..|
T Consensus       312 ~i~W--~g~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g  385 (450)
T 1z7z_I          312 KVTL--NGVPAQPL----GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPEN  385 (450)
T ss_dssp             ------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETT
T ss_pred             EeEE--CCEEcCCC----CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCC
Confidence            9999  66655211    1234799999999999999999997655 3   3477888998888876654  66788999


Q ss_pred             CeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEecc
Q psy11701        323 QSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP  401 (745)
Q Consensus       323 ~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~p  401 (745)
                      +.+.|.|.+.|.|.  +.+.|++++..+...         ...+   .+...|.|.|+|.|.|..|.....+.|.|..|
T Consensus       386 ~~~~l~C~~~g~P~--p~i~W~~~g~~~~~~---------g~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  450 (450)
T 1z7z_I          386 SQQTPMCQAWGNPL--PELKCLKDGTFPLPI---------GESV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  450 (450)
T ss_dssp             CEECCCCCCEEESC--CEEEEEETTTEECCT---------TSCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CeEEEEEecccCCC--CcEEEEECCcccCCC---------CCeE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEcC
Confidence            99999999999987  689999998743211         1112   47779999999999999999999999988643

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=3.4e-35  Score=291.62  Aligned_cols=272  Identities=28%  Similarity=0.448  Sum_probs=232.0

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe--ccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ--GNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      +|+.+...|.+..+.+|++++|.|.+.|.|.+.+.|+|++..+....++..  .....+|.|.+++.+|+|.|+|.+.+.
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~   83 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV   83 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEEC
Confidence            477788899999999999999999999999999999999999987766543  344568999999999999999999998


Q ss_pred             CeeeEEEEEEEEEEecCeEEecCc-eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce-eecCceEEEccC
Q psy11701        110 VGEAKSYSIDLSVLAAPYFTVEPE-FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-KVGPNRITIENL  187 (745)
Q Consensus       110 ~g~~~~~~~~l~V~~~p~~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~L~i~~v  187 (745)
                      .|... ..+.|.|..+|.+...+. ...+.+|+.+.|.|.+.+.|.+.+.|++++..+......... ......|.|.++
T Consensus        84 ~g~~~-~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  162 (284)
T 2rik_A           84 AGKDS-CSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNL  162 (284)
T ss_dssp             TEEEE-EEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSC
T ss_pred             CceEE-EEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCC
Confidence            88754 778999999998876644 556899999999999999999999999999988754321111 123467999999


Q ss_pred             CCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC-ceEEE
Q psy11701        188 RKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG-GRYTI  266 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~  266 (745)
                      +.+|+|.|+|.+.|..|.....+.|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. .++..
T Consensus       163 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~  241 (284)
T 2rik_A          163 SVEDSGDYTCEAHNAAGSASSSTSLKVKE-PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKI  241 (284)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEEC-CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEE
T ss_pred             CcccCEEEEEEEEcCCCceeEEEEEEEec-CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEE
Confidence            99999999999999999988888898875 78888888888899999999999999999999999999988753 34444


Q ss_pred             eec---CcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        267 LET---GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK  305 (745)
Q Consensus       267 ~~~---~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~  305 (745)
                      ...   ..|.|.++..+|.|.|+|.|.|..|.....+.|.|+
T Consensus       242 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          242 MSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             EEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            443   379999999999999999999999999888888875

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=4.7e-36  Score=325.24  Aligned_cols=351  Identities=16%  Similarity=0.249  Sum_probs=245.1

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCC--eeEEEECCEecCCCCCeE---eccCC-----cEEEEccCCCCCCEEEE
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLP--QTIWSKDGVPINPSDRIS---QGNYG-----KSLIIKHVEFSDQGSYT  103 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~--~v~W~~~~~~i~~~~~~~---~~~~~-----~~L~i~~~~~~d~G~Y~  103 (745)
                      +.+.+.+....+.+|++++|.|.+.|.|++  .|+|+|||.+|..+.+..   ....+     +.|.|.+++.+|+|.|+
T Consensus       115 P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  194 (523)
T 2rcj_C          115 PTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYS  194 (523)
T ss_pred             CeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEE
Confidence            344466666778899999999999988654  999999999887543321   11111     36999999999999999


Q ss_pred             EEEEeCCeeeEEEEEEEE----EEecCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEEEEeCCEeccCCCCCCceee
Q psy11701        104 CEVSNGVGEAKSYSIDLS----VLAAPYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWVHNGKPISQAPPNPRRKV  177 (745)
Q Consensus       104 C~~~~~~g~~~~~~~~l~----V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W~~~g~~~~~~~~~~~~~~  177 (745)
                      |.|.+..+... ..+.+.    +..+|.+...+....+.+|+.+.|.|.+.|. |.+ .++|+|+|..+..... .....
T Consensus       195 C~a~n~~~~~~-~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~-~~~~~  272 (523)
T 2rcj_C          195 CQVTHEGSTVE-KTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTF-PAVLQ  272 (523)
T ss_pred             EEEEecCcccc-cceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeC-CcEec
Confidence            99999876544 333332    2346666544444567899999999999885 777 8999999987542111 11111


Q ss_pred             c------CceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceE-EecCceEEEEEEEeecCC---
Q psy11701        178 G------PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEY-TVDGKTVVLTCRVFGAPK---  247 (745)
Q Consensus       178 ~------~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~-v~~g~~~~l~C~~~~~p~---  247 (745)
                      .      .+.|.|.++..+| |.|+|.|.|..|.......|.+...|..+...|.... +.+|+.++|.|.+.+.++   
T Consensus       273 ~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~  351 (523)
T 2rcj_C          273 SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDP  351 (523)
T ss_pred             CCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCC
Confidence            1      3489999999999 9999999999998777777766543333344454444 788999999999998653   


Q ss_pred             -CeEEEeeCCEEccCceE---EEe------ecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEE----EeecceeecC
Q psy11701        248 -PEVNWIHNQKELTGGRY---TIL------ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLT----VKEHTHITDQ  313 (745)
Q Consensus       248 -~~i~W~~~~~~~~~~~~---~~~------~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~----v~~~p~~~~~  313 (745)
                       +.|.|++++..+.....   ...      ..+.|.|.++..+|+|.|+|.|.|..+.......+.    +..+|.+...
T Consensus       352 ~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~  431 (523)
T 2rcj_C          352 QVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL  431 (523)
T ss_pred             ceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCEEEEe
Confidence             48999999988753321   111      123588999999999999999999877654444444    3445554433


Q ss_pred             CCc-EEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCe------EEEEecCCCCCCEEEEEEEEeC
Q psy11701        314 PED-YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQYTCRAQTE  386 (745)
Q Consensus       314 p~~-~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~g~y~c~a~n~  386 (745)
                      +.. ..+. +..+.|.|.+.+.+++.+.+.|++++..+............++      .|.+......|.|.|+|.|.|.
T Consensus       432 ~~~~~~~~-~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~  510 (523)
T 2rcj_C          432 PPSREEMT-KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE  510 (523)
T ss_pred             CCChHHcc-CCceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcC
Confidence            322 2233 4459999999998776679999999988763222222223333      2444444456799999999987


Q ss_pred             Cc
Q psy11701        387 LD  388 (745)
Q Consensus       387 ~g  388 (745)
                      ..
T Consensus       511 ~l  512 (523)
T 2rcj_C          511 AL  512 (523)
T ss_pred             Cc
Confidence            64

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=7e-37  Score=315.02  Aligned_cols=311  Identities=15%  Similarity=0.211  Sum_probs=242.1

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEECCEec--------------CCCCCeEec-----cCCcEEEEccCCCCCCEEE
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPI--------------NPSDRISQG-----NYGKSLIIKHVEFSDQGSY  102 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i--------------~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y  102 (745)
                      .+.+.+|++++|.|.+.+.|.+.+.|+|++..+              ....|+.+.     ....+|.|.+++.+|+|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            357899999999999998999999999998531              112344432     2456899999999999999


Q ss_pred             EEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceE
Q psy11701        103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI  182 (745)
Q Consensus       103 ~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L  182 (745)
                      +|.+.+..     ..+.|.|..   +...|. ..+.+|+++.|.|.+.+.|.+.+.|+++|..+         ......|
T Consensus        83 ~C~~~n~~-----~~~~l~V~~---~~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~---------~~~~~~L  144 (363)
T 1wio_A           83 ICEVEDQK-----EEVQLLVFG---LTANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN---------IQGGKTL  144 (363)
T ss_dssp             EEEETTEE-----EEEEEEEEE---EEESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCE---------EEESSEE
T ss_pred             EEEEEECC-----CcEEEEEEe---CCCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc---------cccceEE
Confidence            99997653     246666664   333343 46889999999999988899999999987543         2356799


Q ss_pred             EEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEee-----cCCCeEEEeeCCE
Q psy11701        183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG-----APKPEVNWIHNQK  257 (745)
Q Consensus       183 ~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~-----~p~~~i~W~~~~~  257 (745)
                      .|.+++.+|+|.|+|.|.|..+.....+.+.|.. +|..   +....+.+|+.++|.|.+.+     .|.+.+.|++++.
T Consensus       145 ~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~-~p~~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~  220 (363)
T 1wio_A          145 SVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA-FQKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA  220 (363)
T ss_dssp             EECSBCGGGCEECEEEEEETTEEEEECCEECEEC-CSCS---EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSC
T ss_pred             EEeeCChhcCCEEEEEEecCCCeEEEEEEEEEec-CCCC---CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCC
Confidence            9999999999999999999877777767777764 3332   24556889999999998877     6778999999987


Q ss_pred             EccC---------ceEEEe-----------e--cCcEEEcccCCCCCEEEEEEEEeC--CceEEEEEEEEEeecceeecC
Q psy11701        258 ELTG---------GRYTIL-----------E--TGDLKITDVAFADSGEYTCFARNK--LGTAQGSGSLTVKEHTHITDQ  313 (745)
Q Consensus       258 ~~~~---------~~~~~~-----------~--~~~l~i~~~~~~d~G~Y~C~~~n~--~g~~~~~~~l~v~~~p~~~~~  313 (745)
                      .+..         .++.+.           .  ...|.|.++..+|+|.|+|.|.|.  .|.....+.|.|..       
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~-------  293 (363)
T 1wio_A          221 SSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR-------  293 (363)
T ss_dssp             CCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE-------
T ss_pred             CccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE-------
Confidence            7643         333332           2  238999999999999999999999  89888888888872       


Q ss_pred             CCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQ  393 (745)
Q Consensus       314 p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~  393 (745)
                            ..|+.+.|.|.+.+.|.+...+.|++++..+..          ...|.|..+...|.|.|+|.|.|. |....+
T Consensus       294 ------v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~----------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~  356 (363)
T 1wio_A          294 ------ATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV----------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLE  356 (363)
T ss_dssp             ------ECCCSSSEEEEEESSCCTTCCEEEECSSSSCSE----------EESSSEEEESSCCSEEEEEEECSS-SSCCEE
T ss_pred             ------ecCCCeeEEEEEccccCCCccEEEEeCCCceee----------eeeeeeeeeccccceeEEEEEecC-CeEEEe
Confidence                  128889999999999876667999999876642          234677889999999999999964 444445


Q ss_pred             EEEEE
Q psy11701        394 ATLTV  398 (745)
Q Consensus       394 ~~l~v  398 (745)
                      ..+.|
T Consensus       357 ~~~~V  361 (363)
T 1wio_A          357 SNIKV  361 (363)
T ss_dssp             EEEEE
T ss_pred             cceEe
Confidence            44444

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=7.6e-37  Score=324.04  Aligned_cols=359  Identities=18%  Similarity=0.240  Sum_probs=247.6

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC----CeeEEEECC--Eec------------CCCCCeEecc--CCcEEEEccCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL----PQTIWSKDG--VPI------------NPSDRISQGN--YGKSLIIKHVE   95 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~----~~v~W~~~~--~~i------------~~~~~~~~~~--~~~~L~i~~~~   95 (745)
                      +...|..+.+.+|++++|.|.+.+.|.    +.+.|+|++  ..+            ....++....  ...+|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE   83 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence            445588889999999999999988876    489999963  322            1134555432  23489999999


Q ss_pred             CCCCEEEEEEEEeCCeeeEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEee-cCCC-eEEEEeCCEeccCCC
Q psy11701         96 FSDQGSYTCEVSNGVGEAKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGKPISQAP  170 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~  170 (745)
                      .+|+|.|+|.|.+..+......+.|.|..   +|.+...+......+|+.+.|.|.+.+ .|.+ .++|+|+|..+....
T Consensus        84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~  163 (438)
T 1qgc_4           84 ADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV  163 (438)
T ss_dssp             GGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             CcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCc
Confidence            99999999999987654333445666653   676666544444457889999999987 6777 999999999886441


Q ss_pred             -C-------CCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEE
Q psy11701        171 -P-------NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV  242 (745)
Q Consensus       171 -~-------~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~  242 (745)
                       .       ........+.|.|.++..+|+|.|+|.|.|..+.......+.+.. ++.....+....+.+|+.++|.|.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~G~~v~L~C~~  242 (438)
T 1qgc_4          164 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE-CEVMLVESGGGLVKPGGSLKLSCTA  242 (438)
T ss_dssp             EEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC--CCEEEEECCEEECTTCCEEEEEEE
T ss_pred             eeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccccccc-ceeEEecCCceEEecCCcEEEEEEE
Confidence             0       001111235799999999999999999999887653333333221 2233344567788999999999999


Q ss_pred             eecC--CCeEEEeeC--CEEcc------------------CceEEEeec-----CcEEEcccCCCCCEEEEEEEEeCCc-
Q psy11701        243 FGAP--KPEVNWIHN--QKELT------------------GGRYTILET-----GDLKITDVAFADSGEYTCFARNKLG-  294 (745)
Q Consensus       243 ~~~p--~~~i~W~~~--~~~~~------------------~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~n~~g-  294 (745)
                      .+.|  .+.+.|+++  +..+.                  .+++....+     ..|.|.+++.+|+|.|+|.|.|..+ 
T Consensus       243 ~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  322 (438)
T 1qgc_4          243 SGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGD  322 (438)
T ss_dssp             ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSC
T ss_pred             cccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCC
Confidence            9988  568999986  43221                  345554432     2799999999999999999998443 


Q ss_pred             ----eEEEEEEEEEee----cceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcC----
Q psy11701        295 ----TAQGSGSLTVKE----HTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN----  362 (745)
Q Consensus       295 ----~~~~~~~l~v~~----~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~----  362 (745)
                          .......+.|..    +|.+...+....+..|+.++|.|.+.+..+..+.+.|++++..+............    
T Consensus       323 ~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~  402 (438)
T 1qgc_4          323 EGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL  402 (438)
T ss_dssp             CCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEE
T ss_pred             ccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEE
Confidence                222345666653    33332222222345799999999999873323599999998776421111222111    


Q ss_pred             CeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        363 DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATL  396 (745)
Q Consensus       363 ~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l  396 (745)
                      .+.|.|......| |.|+|.|.|..|.......+
T Consensus       403 ~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i  435 (438)
T 1qgc_4          403 SSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  435 (438)
T ss_dssp             EEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence            1258888887778 99999999999976655443

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.4e-35  Score=293.66  Aligned_cols=275  Identities=31%  Similarity=0.551  Sum_probs=212.6

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cC--CcEEEEccCCC-CCCEEEEEEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NY--GKSLIIKHVEF-SDQGSYTCEV  106 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~--~~~L~i~~~~~-~d~G~Y~C~~  106 (745)
                      .|+.|...|.+..+.+|++++|.|.+.|.|.+.++|+|+|..+.. .++...  ..  +..|.|.+++. +|+|.|+|.+
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a   83 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVYECVA   83 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------C-TTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCC-CceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence            355677889999999999999999999999999999999998864 343321  22  26899999998 9999999999


Q ss_pred             EeCCeeeEEEEEEEEEEec-------CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce-eec
Q psy11701        107 SNGVGEAKSYSIDLSVLAA-------PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-KVG  178 (745)
Q Consensus       107 ~~~~g~~~~~~~~l~V~~~-------p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-~~~  178 (745)
                      .+..|... ..+.|.|..+       |.+...|....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.......+. ...
T Consensus        84 ~n~~g~~~-~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~  162 (304)
T 2yd9_A           84 QNSVGEIT-VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLR  162 (304)
T ss_dssp             ECSSCEEC-CEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECT
T ss_pred             ECCCCeEE-EEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCC
Confidence            99888744 6788888875       77888888889999999999999999999999999999988754333333 345


Q ss_pred             CceEEEccCCCCCCEEEEEEEEeCCceEEE---EEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeC
Q psy11701        179 PNRITIENLRKSDTGNYGCNATNSLGYVYK---DVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN  255 (745)
Q Consensus       179 ~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~---~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~  255 (745)
                      ++.|.|.+++.+|+|.|+|.|.|..|....   .+.+.+...+|.+...+....+.+|+.++|.|.+.+.|.+.+.|+++
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~  242 (304)
T 2yd9_A          163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG  242 (304)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEET
T ss_pred             CeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEEC
Confidence            679999999999999999999999887663   33444434578888888888899999999999999999999999999


Q ss_pred             CEEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeeccee
Q psy11701        256 QKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI  310 (745)
Q Consensus       256 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~  310 (745)
                      +..+............|.+.++  +|+|.|+|.|.|..|.....+.|.|..++..
T Consensus       243 ~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  295 (304)
T 2yd9_A          243 AEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPKA  295 (304)
T ss_dssp             TEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-------
T ss_pred             CEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCccc
Confidence            9888644211111223666655  6999999999999999999999999876543

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=1.8e-37  Score=353.96  Aligned_cols=442  Identities=22%  Similarity=0.283  Sum_probs=66.2

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeec--CCCeeEEEECCEecCCCCCeEe----------ccCCcEEEEccCCCCCCEE
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDGVPINPSDRISQ----------GNYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~~~i~~~~~~~~----------~~~~~~L~i~~~~~~d~G~  101 (745)
                      ...+..+....+.+|++++|.|.+.+.  +.+.+.|++++..+........          ......|.|.+++.+|+|.
T Consensus       225 ~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  304 (772)
T 3v2a_R          225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL  304 (772)
T ss_dssp             EEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSE
T ss_pred             eeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeE
Confidence            333334445789999999999999874  4568999999988765433311          1223579999999999999


Q ss_pred             EEEEEEeCCeeeEEEEEEEEEEecCeEEecC---ceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec
Q psy11701        102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP---EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG  178 (745)
Q Consensus       102 Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~---~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~  178 (745)
                      |+|.+.+..+... ..+.|.|..+|.+...+   ....+.+|+.+.|.|.+.+.|.+.+.|+++|..+....   . ...
T Consensus       305 Y~C~~~~~~~~~~-~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~---~-~~~  379 (772)
T 3v2a_R          305 YTCAASSGLMTKK-NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH---T-IKA  379 (772)
T ss_dssp             EEEEEECSSCEEE-EEEEEEEECCCC------------------------------------------------------
T ss_pred             EEEEEEcCCccee-EEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCc---e-Ecc
Confidence            9999998877654 77899999988775543   45678999999999999999999999999999887421   1 114


Q ss_pred             CceEEEccCCCCCCEEEEEEEEeCCceEEE--EEEEEEeecCCeeeeCC---CceEEecCceEEEEEEEeecCCCe-EEE
Q psy11701        179 PNRITIENLRKSDTGNYGCNATNSLGYVYK--DVYVNVLAHAPEITEAP---KDEYTVDGKTVVLTCRVFGAPKPE-VNW  252 (745)
Q Consensus       179 ~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~--~~~l~v~~~~p~~~~~~---~~~~v~~g~~~~l~C~~~~~p~~~-i~W  252 (745)
                      ...|.|.++..+|+|.|+|.|.|..|....  .+.|.|.. +|.+....   ....+.+|+.++|.|.+.+.|.+. +.|
T Consensus       380 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~-~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W  458 (772)
T 3v2a_R          380 GHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV-PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW  458 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEec-CCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEE
Confidence            578999999999999999999998886543  45566653 55553221   112377899999999999999886 999


Q ss_pred             eeCCEE--------------------------------cc--CceEEEee-----cCcEEEcccCCCCCEEEEEEEEeCC
Q psy11701        253 IHNQKE--------------------------------LT--GGRYTILE-----TGDLKITDVAFADSGEYTCFARNKL  293 (745)
Q Consensus       253 ~~~~~~--------------------------------~~--~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~n~~  293 (745)
                      ++++..                                +.  ..+.....     ...|.|.++  +|+|.|+|.|.|..
T Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~  536 (772)
T 3v2a_R          459 YWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKV  536 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccc
Confidence            996321                                10  00111111     135777766  78999999999999


Q ss_pred             ceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEE--------------
Q psy11701        294 GTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFV--------------  359 (745)
Q Consensus       294 g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--------------  359 (745)
                      |.....+.+.|..+|.+...|. ..+..|+.+.|.|.+.+.|.  +.+.|++++..+.........              
T Consensus       537 g~~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~--~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~  613 (772)
T 3v2a_R          537 GRGERVISFHVTRGPEITLQPD-MQPTEQESVSLWCTADRSTF--ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLN  613 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccceeEEEEEECCceeeccCC-cccccCCceEEEEeccCCCC--CCcEEEEcCCcccccccCcccccccccccceeecc
Confidence            9988888999988877766554 44678999999999998875  679999987654321111110              


Q ss_pred             -----Ec--CCeEEEEecCCCCCCEEEEEEEEeCCceEE--EEEEEEEe--ccCC---CCCCceeEEeecCceeEEEEEe
Q psy11701        360 -----QS--NDYSLTVTKSSELDSGQYTCRAQTELDFIE--AQATLTVQ--VPLE---APSNFTLIQVIDAKKAVVSWNP  425 (745)
Q Consensus       360 -----~~--~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~--~~~~l~v~--~pp~---~P~~~~~~~~~~~~~v~l~W~~  425 (745)
                           ..  ....|.|.++...|.|.|+|.|.|..|...  ....+.+.  .+|.   .|.+..+   ..+..+.|.|..
T Consensus       614 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v---~~g~~~~l~C~~  690 (772)
T 3v2a_R          614 ATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTT---SIGESIEVSCTA  690 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEE---eCCCCEEEEEEe
Confidence                 00  123489999999999999999999665433  23344443  2222   1122222   445678888876


Q ss_pred             CCCCCcceeeeeEEEEEEeccCCCCc-eeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEe
Q psy11701        426 VSPQSLRGHFRGYKVQTWTEKDGEGS-IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFV  498 (745)
Q Consensus       426 ~~~~~~~~~i~~y~i~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~  498 (745)
                      ...+.       -.| .|.+++.... ...+.+ ......+.|.++...+...|+|.|.|..|....+..+.+.
T Consensus       691 ~g~P~-------p~v-~W~k~g~~l~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  755 (772)
T 3v2a_R          691 SGNPP-------PQI-MWFKDNETLVEDSGIVL-KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE  755 (772)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             CccCC-------CeE-EEEECCeECcCCCCeEE-cCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEE
Confidence            32111       123 2333332211 112222 2345678899999999999999999999987776655554

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=3.2e-34  Score=285.74  Aligned_cols=273  Identities=22%  Similarity=0.392  Sum_probs=225.6

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecC-CCeeEEEE-CCEecCCC-CCeEec---cCCcEEEEccCCCCCCEEEEEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTP-LPQTIWSK-DGVPINPS-DRISQG---NYGKSLIIKHVEFSDQGSYTCEV  106 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p-~~~v~W~~-~~~~i~~~-~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~  106 (745)
                      |..+.+.|.+..+.+|++++|.|.+.+.| .+.+.|+| +|..+... .++...   ....+|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            56678899999999999999999999876 68999999 88887743 444432   34568999999999999999999


Q ss_pred             EeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEcc
Q psy11701        107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN  186 (745)
Q Consensus       107 ~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~  186 (745)
                      .+..|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............++.|.|.+
T Consensus        82 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~  161 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG  161 (291)
T ss_dssp             ECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETT
T ss_pred             EcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEcc
Confidence            99887666788999999999999999999999999999999999999999999999988765443333345667999999


Q ss_pred             CCCCCCEEEEEEEEeCCceE--EEEEEEEEeecCCeeeeCCC--ceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCc
Q psy11701        187 LRKSDTGNYGCNATNSLGYV--YKDVYVNVLAHAPEITEAPK--DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG  262 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g~~--~~~~~l~v~~~~p~~~~~~~--~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~  262 (745)
                      +..+|+|.|+|.+.|..+..  ...+.+.|.. +|.+...+.  ...+.+|+.++|.|.+.+.|.+.+.|++++..+...
T Consensus       162 ~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~  240 (291)
T 1qz1_A          162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNV-PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE  240 (291)
T ss_dssp             CCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE-EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred             CccccCeEEEEEEEecCCCceeeEEEEEEEec-CCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCC
Confidence            99999999999999876433  3445666653 666655443  446778999999999999999999999999987643


Q ss_pred             -----eEEEeec-CcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        263 -----RYTILET-GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE  306 (745)
Q Consensus       263 -----~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~  306 (745)
                           ++..... ..|.|.++..+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       241 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          241 EEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             --CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence                 3444333 4699999999999999999999999998888888864

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=6.5e-36  Score=341.18  Aligned_cols=435  Identities=18%  Similarity=0.202  Sum_probs=128.9

Q ss_pred             eccceeEecC--CcEEEEEEEeecCCCeeEEEEC--CEecCCC-CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         39 TRKKEVALRN--KKVELFCIFGGTPLPQTIWSKD--GVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        39 ~~~~~~v~~G--~~~~l~C~~~g~p~~~v~W~~~--~~~i~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      .+....+.+|  ++++|.|.+.+ |.+.++|+|+  +..+... ..... .....|.|.+++.+|.|.|+|.+.+.....
T Consensus       132 ~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  209 (772)
T 3v2a_R          132 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMISYAGMVFCEAKINDESY  209 (772)
T ss_dssp             CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCEE-ETTTEEEEEGGGTTTCSEEEEEEEETTEEE
T ss_pred             cceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceeec-CCCCCeEecCCChhhCeEEEEEEEECCceE
Confidence            3566778999  99999999976 7789999997  6655443 33333 345679999999999999999999875544


Q ss_pred             EEEEEEEEEEe--cCeEEecCc-eeEeeCCCeEEEEEEEee--cCCCeEEEEeCCEeccCCCCCC---------ceeecC
Q psy11701        114 KSYSIDLSVLA--APYFTVEPE-FINAAEEETVTFECKASG--LPEPEIHWVHNGKPISQAPPNP---------RRKVGP  179 (745)
Q Consensus       114 ~~~~~~l~V~~--~p~~~~~~~-~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~g~~~~~~~~~~---------~~~~~~  179 (745)
                      .+..+.+.+..  .+.+...+. ...+.+|++++|.|.+.+  .+.+.+.|++++..+.......         ......
T Consensus       210 ~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (772)
T 3v2a_R          210 QSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL  289 (772)
T ss_dssp             ECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEE
T ss_pred             EEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEE
Confidence            44435555543  233444444 368999999999999987  4556899999988765322110         112234


Q ss_pred             ceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCC---CceEEecCceEEEEEEEeecCCCeEEEeeCC
Q psy11701        180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAP---KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQ  256 (745)
Q Consensus       180 ~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~---~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~  256 (745)
                      ..|.|.+++.+|+|.|+|.+.|..+.....+.|.|.. +|.+...+   ....+.+|+.++|.|.+.+.|.+.+.|++++
T Consensus       290 ~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g  368 (772)
T 3v2a_R          290 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNG  368 (772)
T ss_dssp             EEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEEC-CCC---------------------------------------
T ss_pred             EEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeC-CCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECC
Confidence            5899999999999999999999998888888888875 55544332   4556889999999999999999999999999


Q ss_pred             EEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceE--EEEEEEEEeecceeecCC---CcEEEecCCeEEEEEEE
Q psy11701        257 KELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTA--QGSGSLTVKEHTHITDQP---EDYEVEAGQSATFRCNA  331 (745)
Q Consensus       257 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~--~~~~~l~v~~~p~~~~~p---~~~~~~~g~~~~l~C~~  331 (745)
                      ..+... +.....+.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..+|.+....   ....+..|+.+.|.|.+
T Consensus       369 ~~l~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~  447 (772)
T 3v2a_R          369 IPLESN-HTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTV  447 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeCCCC-ceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEe
Confidence            877642 223344789999999999999999999988865  456677777777654331   11236789999999999


Q ss_pred             EecCCCCcE-EEEeeCCee--------------------------------ccCCCCCeEEE--c---CCeEEEEecCCC
Q psy11701        332 VSDPSLKLS-IVWLRGSEP--------------------------------IDFESEPRFVQ--S---NDYSLTVTKSSE  373 (745)
Q Consensus       332 ~~~~~~~~~-i~W~~~~~~--------------------------------~~~~~~~~~~~--~---~~~~l~i~~~~~  373 (745)
                      .+.|.  +. +.|++++..                                +... ..+...  .   ....|.|..+  
T Consensus       448 ~g~p~--p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-~~~~~~~~~~~~~~~~L~i~~~--  522 (772)
T 3v2a_R          448 YAIPP--PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN-KNQFALIEGKNKTVSTLVIQAA--  522 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCC--CcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEe-ccceeeccCcceEEEEEEEeec--
Confidence            98876  44 999986321                                0000 000000  0   1135666655  


Q ss_pred             CCCEEEEEEEEeCCceEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCce-
Q psy11701        374 LDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSI-  452 (745)
Q Consensus       374 ~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~-  452 (745)
                      .|.|.|+|.|.|..|.....+.+.|..+|.......... ..+..+.|.|.......       -.+ .|.+.+..... 
T Consensus       523 ~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~-~~G~~v~l~C~~~~~p~-------~~v-~W~k~~~~~~~~  593 (772)
T 3v2a_R          523 NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQP-TEQESVSLWCTADRSTF-------ENL-TWYKLGPQPLPI  593 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCeEEEEEEEccccccceeEEEEEECCceeeccCCccc-ccCCceEEEEeccCCCC-------CCc-EEEEcCCccccc
Confidence            689999999999999888888888875543221111111 45566777776532110       112 12222111000 


Q ss_pred             e--------------------EE-EEccCceeEEEecccccCcceeEEEEEecCCCCCCC
Q psy11701        453 R--------------------EL-IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPP  491 (745)
Q Consensus       453 ~--------------------~~-~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~  491 (745)
                      .                    .. .........+.|.++...+.+.|+|.|.|..|....
T Consensus       594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  653 (772)
T 3v2a_R          594 HVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRH  653 (772)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEE
Confidence            0                    00 000112334888999999999999999997655433

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-34  Score=283.93  Aligned_cols=275  Identities=23%  Similarity=0.409  Sum_probs=221.8

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEE-CCEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEe
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK-DGVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~-~~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      +++.+...+.+..+.+|++++|.|.+.|.|. .+.|+| +|..+....++.+...+  ..|.|.+++.+|+|.|+|.+.+
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   81 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   81 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence            3566778899999999999999999998875 999999 78888777777654433  5899999999999999999999


Q ss_pred             CCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC
Q psy11701        109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR  188 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~  188 (745)
                      ..|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............++.|.|.++.
T Consensus        82 ~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  161 (291)
T 2wim_A           82 AKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNIN  161 (291)
T ss_dssp             SSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCC
T ss_pred             ccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecc
Confidence            88887777889999999988888888899999999999999999999999999998876543332333456789999999


Q ss_pred             CCCCEEEEEEEEeCCceEE--EEEEEEEeecCCeeeeCCC--ceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCc-e
Q psy11701        189 KSDTGNYGCNATNSLGYVY--KDVYVNVLAHAPEITEAPK--DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-R  263 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~~~--~~~~l~v~~~~p~~~~~~~--~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~  263 (745)
                      .+|+|.|+|.+.|..+...  ..+.+.+.. +|.+...+.  ...+.+|+.++|.|.+.+.|.+.+.|++++..+... +
T Consensus       162 ~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~  240 (291)
T 2wim_A          162 KSDEGIYRCEGRVEARGEIDFRDIIVIVNV-PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK  240 (291)
T ss_dssp             GGGCEEEEEEEEETTTTEEEEEEEEEEEEB-CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTT
T ss_pred             hhhCEEEEEEEEECCCCeeEEeeEEEEecc-CCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCcc
Confidence            9999999999999875433  345565553 666655544  345778999999999999999999999999987543 4


Q ss_pred             EEEee-cCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc
Q psy11701        264 YTILE-TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT  308 (745)
Q Consensus       264 ~~~~~-~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p  308 (745)
                      +.... .+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..++
T Consensus       241 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  286 (291)
T 2wim_A          241 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH  286 (291)
T ss_dssp             EEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred             EEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence            43332 3579999999999999999999999999999999987654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=5.6e-33  Score=290.95  Aligned_cols=273  Identities=26%  Similarity=0.482  Sum_probs=230.3

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC---CCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP---SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      |..+...+....+.+|++++|.|.+.|.|.+.+.|+|++..+..   ..+... ..+++|.|.+++.+|+|.|+|.+.+.
T Consensus       121 p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~  199 (403)
T 3laf_A          121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV-LPSGALQISRLQPGDSGVYRCSARNP  199 (403)
T ss_dssp             CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEE-CTTSCEEECSCCGGGCEEEEEEEECS
T ss_pred             CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEE-cCCceEEEcccccccCEEEEEEEEcC
Confidence            55666778889999999999999999999999999999988853   233433 33458999999999999999999998


Q ss_pred             CeeeEEEEEEEEEEecCe------EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEE
Q psy11701        110 VGEAKSYSIDLSVLAAPY------FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT  183 (745)
Q Consensus       110 ~g~~~~~~~~l~V~~~p~------~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~  183 (745)
                      .+...+..+.|.|...|.      +...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ......++.|.
T Consensus       200 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~L~  278 (403)
T 3laf_A          200 ASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK-KYSLLGGSNLL  278 (403)
T ss_dssp             SCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSS-SEEEETTTEEE
T ss_pred             CCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCc-eEEECCccEEE
Confidence            776555567788876653      45567778889999999999999999999999999998864321 22334567899


Q ss_pred             EccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC-c
Q psy11701        184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG-G  262 (745)
Q Consensus       184 i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~  262 (745)
                      |.++..+|+|.|+|.|.|..|.....+.|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. .
T Consensus       279 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~  357 (403)
T 3laf_A          279 ISNVTDDDSGTYTCVVTYKNENISASAELTVLV-PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD  357 (403)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-EEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSS
T ss_pred             EeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC-CCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCC
Confidence            999999999999999999999988889998875 78888888888899999999999999999999999999988753 4


Q ss_pred             eEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc
Q psy11701        263 RYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT  308 (745)
Q Consensus       263 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p  308 (745)
                      ++.....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|
T Consensus       358 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          358 YFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             SEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             cEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence            4555566789999999999999999999999999999999987653

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=3.3e-32  Score=270.02  Aligned_cols=274  Identities=22%  Similarity=0.449  Sum_probs=227.8

Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-ecCceEEEccCCCCCCEEEEEEEEe
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      ..+|.|...|....+.+|++++|.|.+.+.|.+.++|+|+|..+.......... .....|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   82 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN   82 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence            358889999999999999999999999998999999999999887443211111 1346899999999999999999999


Q ss_pred             CCceEEEEEEEEEeecCCeeeeCC-CceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCc-eEEEe---ecCcEEEcc
Q psy11701        202 SLGYVYKDVYVNVLAHAPEITEAP-KDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-RYTIL---ETGDLKITD  276 (745)
Q Consensus       202 ~~g~~~~~~~l~v~~~~p~~~~~~-~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~  276 (745)
                      ..|.....+.|.|.. +|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ++...   ....|.|.+
T Consensus        83 ~~g~~~~~~~l~V~~-~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~  161 (284)
T 2rik_A           83 VAGKDSCSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYN  161 (284)
T ss_dssp             TTEEEEEEEEEEEEC-CCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECS
T ss_pred             CCceEEEEEEEEccC-CCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECC
Confidence            999888888999885 56655444 4456889999999999999999999999999887543 22221   234699999


Q ss_pred             cCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCC
Q psy11701        277 VAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP  356 (745)
Q Consensus       277 ~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~  356 (745)
                      ++..|+|.|+|.+.|..|.....+.|.|..+|.+...|....+..|+.+.|.|.+.+.|.  +.+.|++++..+......
T Consensus       162 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~v~W~~~~~~~~~~~~~  239 (284)
T 2rik_A          162 LSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPP--FQVSWHKDKRELRSGKKY  239 (284)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSC--CEEEEEETTEEECBTTTE
T ss_pred             CCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCC--CEEEEEECCEECcCCCCE
Confidence            999999999999999999999999999999998888888888999999999999998876  789999999988744332


Q ss_pred             eEEEc-CCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        357 RFVQS-NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ  399 (745)
Q Consensus       357 ~~~~~-~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~  399 (745)
                      ..... ....|.|..+...|.|.|+|.|.|..|.....+.|.|+
T Consensus       240 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             EEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            22222 22579999999999999999999999999888888774

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=100.00  E-value=5.5e-32  Score=299.43  Aligned_cols=417  Identities=14%  Similarity=0.108  Sum_probs=268.6

Q ss_pred             CCCEEEEEEEEeCCceEEEEEEEEEeecceeecCC-CcEEE--ecCCeEEEEEEEEe----cCCCCcEEEEeeCCe-ecc
Q psy11701        280 ADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQP-EDYEV--EAGQSATFRCNAVS----DPSLKLSIVWLRGSE-PID  351 (745)
Q Consensus       280 ~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p-~~~~~--~~g~~~~l~C~~~~----~~~~~~~i~W~~~~~-~~~  351 (745)
                      ++.|.+.|. .|..|..-......+...|   ..| ..+.+  .....+.|.|....    .+.. +.++|..... ...
T Consensus       133 ~c~g~~~Cc-~n~cG~~C~~P~~~~~~~P---~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~  207 (680)
T 1zlg_A          133 ECSGVKKCC-SNGCGHTCQVPKTLYKGVP---LKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPS  207 (680)
T ss_pred             cCCCccccc-cccccccccccceeeeccc---ccccccceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcC
Confidence            456777774 3444442111111123322   334 34444  34567888888642    2221 5556654321 000


Q ss_pred             C---CCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCce-EE--EEEEEEEe---ccCCCCCCceeEEee--cCc---
Q psy11701        352 F---ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDF-IE--AQATLTVQ---VPLEAPSNFTLIQVI--DAK---  417 (745)
Q Consensus       352 ~---~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~-~~--~~~~l~v~---~pp~~P~~~~~~~~~--~~~---  417 (745)
                      .   .............+.|.++.....|.|++.|.|..|. ..  ....+...   .+|.+|.++.+.. .  +.+   
T Consensus       208 ~~~~~~w~~v~~~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~-~~~~~~g~~  286 (680)
T 1zlg_A          208 EDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLAN-STVNSDGSV  286 (680)
T ss_pred             ccccCceEEEEecCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeee-eeecCCCce
Confidence            0   0111122234456889999999999999999999882 22  22222221   4788999999876 5  667   


Q ss_pred             eeEEEEEeCCCCCcceeeeeEEEEEEec-c----CCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCC
Q psy11701        418 KAVVSWNPVSPQSLRGHFRGYKVQTWTE-K----DGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPS  492 (745)
Q Consensus       418 ~v~l~W~~~~~~~~~~~i~~y~i~~~~~-~----~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S  492 (745)
                      ++.|+|+++.  ..+++|.+|.|+|... .    .....+....+ ......++|.+|.+++.|.|+|.|.|..|.|++|
T Consensus       287 sv~l~W~pP~--~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S  363 (680)
T 1zlg_A          287 TVTIVWDLPE--EPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTT-DGFQNSVILEKLQPDCDYVVELQAITYWGQTRLK  363 (680)
T ss_pred             EEEEEecCCC--CCCCceeEEEEEEEecccccccCCccceEEEEE-cCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCC
Confidence            9999999853  3568999999988732 1    11123444445 5566899999999999999999999999999988


Q ss_pred             cc---eEEeCCCCCCCCCCceeEEEcCCceEEE-----------EeeCCCCCCCceeeEEEEEEEcCCcccCCcc-----
Q psy11701        493 EI---ISFVTPEGVPGTVQSLEAIPLGSSAFYL-----------KWVKPEQPNGVLMGYKIKYQSVKGTKVGPLL-----  553 (745)
Q Consensus       493 ~~---~~~~t~~~~P~~p~~~~~~~~~~~~i~l-----------~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~-----  553 (745)
                      ..   +.++|.+++|+ |.++.+...+.++|.|           +|.+|...+ .+.+|.|.|+..+........     
T Consensus       364 ~~~~~v~~~T~~~~P~-p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~~~-~~~~y~v~w~~~~~~~v~~Y~V~w~~  441 (680)
T 1zlg_A          364 SAKVSLHFTSTHATNN-KEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQD-GQLQVKVYWKKTEDPTVNRYHVRWFP  441 (680)
T ss_pred             CCceeEEEECCCCCCC-ccccccccccCccccccccccCCCccccccCCcccC-CcceEEEEEeCCCCCccceEEEEEee
Confidence            87   88899988888 8899998888888877           999986433 467899998765432100000     


Q ss_pred             ---------cccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeeccc----------------------
Q psy11701        554 ---------ERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPF----------------------  602 (745)
Q Consensus       554 ---------~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~----------------------  602 (745)
                               ...........++++|.+|.|++.|.|+|.|+|..|.|......+....                      
T Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~  521 (680)
T 1zlg_A          442 EACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVL  521 (680)
T ss_pred             eecccCCCCcceeeeeeccCceEEecCCCCCCeEEEEEEEecCCCCCCccccceeCCCccccccCCccccccCCCCcccc
Confidence                     0000011345678999999999999999999999997653221111100                      


Q ss_pred             ----CCCCC----CCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceE
Q psy11701        603 ----KNPDN----VEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPY  674 (745)
Q Consensus       603 ----~~~~~----~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y  674 (745)
                          ..|.+    +.+.....+ |.|+|+++... .||.|.+|+|.|....++......                  ...
T Consensus       522 ~~v~~~P~~l~~~v~v~~~~~t-i~lsW~pP~~~-~ng~I~gY~V~y~~~~~~~~~~~~------------------~~~  581 (680)
T 1zlg_A          522 SKVLAKPENLSASFIVQDVNIT-GHFSWKMAKAN-LYQPMTGFQVTWAEVTTESRQNSL------------------PNS  581 (680)
T ss_pred             ccccCCccccceeEEEeccCce-EEEEecCCCCC-CCCCceeEEEEEEEccCCCccccc------------------cce
Confidence                00011    001111223 89999977643 489999999999865332210000                  000


Q ss_pred             EEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCCCCc
Q psy11701        675 EIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGGT  743 (745)
Q Consensus       675 ~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~~~~  743 (745)
                      .+               ......+++.+++.|.+|+|++.|.|+|+|.|.+|.|++ +++.|+|+++++
T Consensus       582 ~~---------------~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~G~~-~~~~~~T~~~~P  634 (680)
T 1zlg_A          582 II---------------SQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPA-TIKTFRTPELPP  634 (680)
T ss_pred             ee---------------ecccccCCcccEEEecCCCCCceEEEEEEEEcCCCcCCC-cceEEECCCCCC
Confidence            00               001122467889999999999999999999999999998 889999987753

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=100.00  E-value=4.3e-32  Score=280.07  Aligned_cols=315  Identities=19%  Similarity=0.297  Sum_probs=233.4

Q ss_pred             cCCCCCCceeEEeecCc-eeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        401 PLEAPSNFTLIQVIDAK-KAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~-~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      ||.+|.++++.. .+.+ ++.|.|+++.    ++.+.+|.|+|+.............+ ......+++.+|.+++.|.|+
T Consensus         1 Pp~~P~~l~~~~-~~~~~sv~l~W~~~~----~~~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~   74 (368)
T 1fnf_A            1 PLSPPTNLHLEA-NPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVV-HADQSSCTFDNLSPGLEYNVS   74 (368)
T ss_dssp             CCCCCEEEEEEE-CSSSSCEEEEEECCS----CSSCCEEEEEEEETTTCSSCCEEEEE-CTTCCEEECCCCCTTSCEEEE
T ss_pred             CCCCCcceEEEe-cCCCcEEEEEEeCCC----CCCceEEEEEEEECCCCCCceeEEEe-cCCcCEEEECCCCCCCEEEEE
Confidence            688999999987 6665 6999999853    46789999999876654333333445 667889999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccc
Q psy11701        480 VLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI  559 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~  559 (745)
                      |.|.|..|.+.++.   ..+...+ .+|.++++...+.++|.|+|++|.  ++.+.+|.|+|+..+....  +...  .+
T Consensus        75 V~a~~~~g~s~~~~---~~~~~~~-~~p~~l~~~~~~~~si~l~W~~p~--~~~~~~Y~v~~~~~~~~~~--~~~~--~~  144 (368)
T 1fnf_A           75 VYTVKDDKESVPIS---DTIIPAV-PPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNEED--VAEL--SI  144 (368)
T ss_dssp             EEEEETTEECCCEE---EEECCCC-CCCEEEEEESCCSSCEEEEEECCT--TCCCSEEEEEEEETTCTTC--CEEE--EE
T ss_pred             EEEEcCCCccCcee---eeecCCC-cCCceeEEEEcCCCeEEEEeeCCC--CCCCcEEEEEEEECCCCCc--cEEE--Ec
Confidence            99999998876543   2333333 378899999989999999999984  4689999999998654321  1111  12


Q ss_pred             cCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCcceeEEEeecCccccCCCcceEEE
Q psy11701        560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRI  639 (745)
Q Consensus       560 ~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i  639 (745)
                       .....++.+.+|.|++.|.|+|.|.|..|.|.++..........+..+.+.....+++.|+|+++.     |.+.+|.|
T Consensus       145 -~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~~~P~~l~~~~~~~~sv~l~W~~p~-----~~i~~Y~v  218 (368)
T 1fnf_A          145 -SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR-----ATITGYRI  218 (368)
T ss_dssp             -CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEESCCSSEEEEEEECCS-----SCCSEEEE
T ss_pred             -CCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeEeeecCCCCCCCccEEEEccCCEEEEEEeCCC-----CCcCEEEE
Confidence             456689999999999999999999999998887544333323333334444556789999998763     56799999


Q ss_pred             EEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeE---------------------------
Q psy11701        640 FWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIR---------------------------  692 (745)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~---------------------------  692 (745)
                      .|+.......+. ..........+++.||.+++.|.|+|.|....|.+..+..                           
T Consensus       219 ~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~  297 (368)
T 1fnf_A          219 RHHPEHFSGRPR-EDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWD  297 (368)
T ss_dssp             EEECSCCSSCCE-EEEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEEEEEECCCCSCEEEEEEEEETTEEEEEEE
T ss_pred             EEecCCCCCCcc-EEEeCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCcccccccCCCCCCCeeEEEecCCCEEEEEee
Confidence            998765433322 2233445688999999999999999999444333221110                           


Q ss_pred             ----------------------EEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCc---ceEEeC
Q psy11701        693 ----------------------ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---IISFVT  738 (745)
Q Consensus       693 ----------------------~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~---~~~~~t  738 (745)
                                            .....+++.+.+.+.+|.|++.|.|+|+|.|.+|.|++|+   .++|+|
T Consensus       298 ~p~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~s~~~~~i~~~T  368 (368)
T 1fnf_A          298 APAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT  368 (368)
T ss_dssp             CCSSCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEECCCSSSCCBCCCEEEEECC
T ss_pred             CCCCccceEEEEEEECCCCCccEEEEcCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCcccCceeeeeeeC
Confidence                                  1123356778999999999999999999999999999987   455554

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=318.68  Aligned_cols=409  Identities=17%  Similarity=0.173  Sum_probs=283.2

Q ss_pred             CCCcEEEecCCeEEEEEEEEec-----CCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCC
Q psy11701        313 QPEDYEVEAGQSATFRCNAVSD-----PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL  387 (745)
Q Consensus       313 ~p~~~~~~~g~~~~l~C~~~~~-----~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~  387 (745)
                      .|.+..+..|++++|.|.+...     ..+...|.|++++..+... ..+........|.|.++...+. .|.|.+....
T Consensus         9 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~-~~~~~~~~~~~l~i~~~~~~~~-~y~C~~~~~~   86 (589)
T 3l5h_A            9 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTIINRTASSVTFTDIASLNI-QLTCNILTFG   86 (589)
T ss_dssp             SCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGG-GCBCCSSSCCBCCCCCCCSSCC-CCCCC-CCTT
T ss_pred             ecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChH-HccccCCcEeEEEEecCCCcce-eeEEecccCC
Confidence            4556667899999999999743     1223678999998766532 2222223345788888887765 4778876422


Q ss_pred             c--eEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEE
Q psy11701        388 D--FIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTT  465 (745)
Q Consensus       388 g--~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~  465 (745)
                      .  .......|.+..||.+|.++++.. ....++.++|+++...   +.+.+|.|+|+.....   .............+
T Consensus        87 ~~~~~~~~~~l~v~~pP~~P~nl~c~~-~~~~~~~~~W~~~~~~---~~~~~y~l~~~~~~~~---~~~c~~~~~~~~~c  159 (589)
T 3l5h_A           87 QLEQNVYGITIISGLPPEKPKNLSCIV-NEGKKMRCEWDGGRET---HLETNFTLKSEWATHK---FADCKAKRDTPTSC  159 (589)
T ss_dssp             CC-CCCCCCCCCC-CCCCCCEEEEEEE-ETTSCEEEEEECCSCC---SSCEEEEECCBCSSSB---CCCEECBTTBSSCC
T ss_pred             CcccEEEeEEEeccCCCCCCEeeEEEE-CCCceEEEEECCCCcC---CcCceEEEEEEEcCCC---cccCCCCCCCcEEE
Confidence            1  223445677788999999999988 7788999999986422   3578899977544321   11122113445677


Q ss_pred             Eec-ccccCcceeEEEEEecCCCCCCCCcceEEeCC-CCCCCCCCceeEE--EcCCceEEEEeeCCCCCCCceeeEEEEE
Q psy11701        466 EVD-KFVPASKNFARVLAFNGAYNGPPSEIISFVTP-EGVPGTVQSLEAI--PLGSSAFYLKWVKPEQPNGVLMGYKIKY  541 (745)
Q Consensus       466 ~i~-~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~-~~~P~~p~~~~~~--~~~~~~i~l~W~~p~~~~g~i~~Y~v~~  541 (745)
                      .+. +|.+++.|.|+|.|.|..|.+.. ..+.+.+. ...|.+|.++.+.  ..+.+++.|+|++|...++.+.+|.|+|
T Consensus       160 ~~~~~l~~~~~Y~~~v~a~n~~G~~~s-~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~~  238 (589)
T 3l5h_A          160 TVDYSTVYFVNIEVWVEAENALGKVTS-DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQY  238 (589)
T ss_dssp             BCCSCCCSSSCEEECEEEEESSCCBCC-CCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGGTSCEEEEEEE
T ss_pred             EECCCCchheeEEEEEEEEeCCCCccc-ccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCCeeeEEEEEEE
Confidence            777 79999999999999999998743 33445433 3478899999884  4678999999999987778999999999


Q ss_pred             EEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCC-C----------
Q psy11701        542 QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVE-G----------  610 (745)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~-~----------  610 (745)
                      +..+...|......   .......++.+.+|.|++.|.|+|+|.|..|.|.+|++.......+....+ .          
T Consensus       239 ~~~~~~~w~~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~~v~~  315 (589)
T 3l5h_A          239 RTKDASTWSQIPPE---DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDP  315 (589)
T ss_dssp             EETTCSCCBCCCTT---SSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEEECCS
T ss_pred             CCCCCCCcEEEccc---cCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcEEEEeec
Confidence            98876554432210   113456889999999999999999999999999887665444333333222 1          


Q ss_pred             -CCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCC
Q psy11701        611 -RGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEG  689 (745)
Q Consensus       611 -~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~  689 (745)
                       .....+++.|+|++++....+|.|.+|.|.|+..+..  +....   .....  +..|.+++.|.|+|.|....|.++.
T Consensus       316 ~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~--~~~~~---~~~~~--~~~l~~~~~Y~~~V~A~n~~G~~~~  388 (589)
T 3l5h_A          316 SHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH--LQNYT---VNATK--LTVNLTNDRYLATLTVRNLVGKSDA  388 (589)
T ss_dssp             CSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSC--CCBCC---CSSSC--CEECCCSSCCCEEEEEEBTTBCCCC
T ss_pred             CcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCC--ceeec---cCCce--EEEEeCCCCEEEEEEEEeCCccCCC
Confidence             1345689999999988888999999999999765332  22221   12233  3448899999999999766554322


Q ss_pred             CeEE-------------------------------------------------------EEEecCCCcEEEecccccCCc
Q psy11701        690 SIRE-------------------------------------------------------LIVNKGESTTTEVDKFVPASK  714 (745)
Q Consensus       690 ~~~~-------------------------------------------------------~~~~~~~~~~~~i~~L~p~~~  714 (745)
                      +...                                                       ..+.......+.+.+|.|++.
T Consensus       389 s~~~~~~~~~~~~~p~~~l~~~~~~~si~l~W~~p~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~  468 (589)
T 3l5h_A          389 AVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKC  468 (589)
T ss_dssp             CCCCCCCTTCCCCSCCCSCEEEECSSSEEEECCCCSSCCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSCCCSSSE
T ss_pred             eEEEeecccccCCCCcceEEEEECCCeEEEEEECCCCCccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhccccCcE
Confidence            1100                                                       011112234566799999999


Q ss_pred             ceeEEEEecCcccCCCCcceEEeCCCCC
Q psy11701        715 NFARVLAFNGAYNGPPSEIISFVTPEGG  742 (745)
Q Consensus       715 Y~~~v~A~~~~G~g~~s~~~~~~t~~~~  742 (745)
                      |.|+|+|.|..|.|+++. +.+.|.++.
T Consensus       469 Y~~~V~A~~~~g~g~~~~-~~~~t~~~~  495 (589)
T 3l5h_A          469 YLITVTPVYADGPGSPES-IKAYLKQAP  495 (589)
T ss_dssp             EEEEECBEETTEECCCEE-EEEESSCCC
T ss_pred             EEEEEEEEeCCcccCCEE-EEEEeccCC
Confidence            999999999999998864 666676554

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=3.9e-32  Score=281.40  Aligned_cols=264  Identities=31%  Similarity=0.448  Sum_probs=212.9

Q ss_pred             eccceeEecCCcEEEEEEEe-ecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE--
Q psy11701         39 TRKKEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS--  115 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~--  115 (745)
                      .+....+.+|+.+.|.|... +.|.+.+.|++++.++....+......++.|.|.+++.+|+|.|+|.|.|..+....  
T Consensus       108 ~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~  187 (384)
T 3kld_A          108 TRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLG  187 (384)
T ss_dssp             CCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEEC
T ss_pred             CCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeC
Confidence            34557899999999999763 557789999999999876666555555668999999999999999999997654321  


Q ss_pred             EEEEEEEE-------ecCeEE-ecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC-CEeccCCCCCCceeecCceEEEcc
Q psy11701        116 YSIDLSVL-------AAPYFT-VEPEFINAAEEETVTFECKASGLPEPEIHWVHN-GKPISQAPPNPRRKVGPNRITIEN  186 (745)
Q Consensus       116 ~~~~l~V~-------~~p~~~-~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~L~i~~  186 (745)
                      ....+.+.       .+|.+. ..|....+.+|+++.|.|.+.|.|.+.+.|+|+ +..+..   ..+....++.|.|.+
T Consensus       188 ~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~---~~~~~~~~~~L~I~~  264 (384)
T 3kld_A          188 PPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIAR---KARRHKSNGILEIPN  264 (384)
T ss_dssp             CCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCT---TCEECTTSCEEEECS
T ss_pred             CceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccc---cceecCCCcEEEECC
Confidence            11222221       234443 346677889999999999999999999999995 444442   122333467899999


Q ss_pred             CCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEE
Q psy11701        187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTI  266 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~  266 (745)
                      ++.+|+|.|+|.|.|..|.....+.|.|.. +|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.......
T Consensus       265 v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~-~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~  343 (384)
T 3kld_A          265 FQQEDAGSYECVAENSRGKNVAKGQLTFYA-QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQ  343 (384)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEE-EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEE
T ss_pred             CChhhCEEEEEEEEcCCCeEEEEEEEEEec-CCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEE
Confidence            999999999999999999998888888875 7778788888899999999999999999999999999999886443333


Q ss_pred             eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE  306 (745)
Q Consensus       267 ~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~  306 (745)
                      ...++|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       344 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          344 IEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             EETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             EeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence            4667999999999999999999999999999999998853

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=284.56  Aligned_cols=272  Identities=22%  Similarity=0.301  Sum_probs=212.3

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeec-CCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      .|+.+. .+.+..+.+|++++|.|.+.+. |.+.+.|+|+|..|....++.+......|.|.+++.+|+|.|+|.+.+..
T Consensus         6 ~~P~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   84 (317)
T 2y25_A            6 TGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR   84 (317)
T ss_dssp             SCCEEE-EEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSS
T ss_pred             CCCcEe-eeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCC
Confidence            344444 4556999999999999999887 78899999999999877777766666799999999999999999999988


Q ss_pred             eeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEee----------cCCCeEEEEeCCEeccCCCCCCceeec--
Q psy11701        111 GEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG----------LPEPEIHWVHNGKPISQAPPNPRRKVG--  178 (745)
Q Consensus       111 g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~----------~p~~~v~W~~~g~~~~~~~~~~~~~~~--  178 (745)
                      |... ..+.|.|...|.+...+....+.+|+.+.|.|.+.+          .|.+.+.|+++|..+...... .....  
T Consensus        85 g~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~  162 (317)
T 2y25_A           85 GKDK-SRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRV-KTGVTGE  162 (317)
T ss_dssp             CEEE-EEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSE-EEEECSS
T ss_pred             CcEE-EEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCe-EEeccCC
Confidence            7665 556666666555544455556678888888888776          688999999999988743211 11112  


Q ss_pred             CceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEee-------------------cCCeeee-CCCceEEecCceEEE
Q psy11701        179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA-------------------HAPEITE-APKDEYTVDGKTVVL  238 (745)
Q Consensus       179 ~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~-------------------~~p~~~~-~~~~~~v~~g~~~~l  238 (745)
                      ...|.|.+++.+|+|.|+|.+.|..|.....+.+.+..                   .+|.+.. .+....+.+|+.++|
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l  242 (317)
T 2y25_A          163 QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNL  242 (317)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCE
T ss_pred             EEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEE
Confidence            23599999999999999999999999888877776531                   1334443 355678899999999


Q ss_pred             EEEEeecCCCeEEEeeCCEEccC-ceEEEeec-C---cEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        239 TCRVFGAPKPEVNWIHNQKELTG-GRYTILET-G---DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE  306 (745)
Q Consensus       239 ~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~-~---~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~  306 (745)
                      .|.+.+.|.+.+.|++++..+.. .++.+... +   .|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       243 ~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          243 TCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             EEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            99999999999999999988753 34454433 3   799999999999999999999999999888888864

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=1.1e-33  Score=299.78  Aligned_cols=352  Identities=16%  Similarity=0.195  Sum_probs=234.1

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEecC-----------------CCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPIN-----------------PSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i~-----------------~~~~~~~~~----~~~~L~   90 (745)
                      ++..|..+.+.+|++++|.|.+.+.+  .+.+.|+|+  +..+.                 ...|+.+..    ...+|.
T Consensus         3 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (444)
T 1igt_B            3 KLQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQ   82 (444)
T ss_dssp             EEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEE
Confidence            34566778899999999999998764  568999985  33210                 124655432    235899


Q ss_pred             EccCCCCCCEEEEEEEEeCCee--eEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEEEEeC
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGE--AKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWVHN  162 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~--~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W~~~  162 (745)
                      |.+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+...+....+.+|+.+.|.|.+.|. |.+ .+.|+++
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  162 (444)
T 1igt_B           83 MSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG  162 (444)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecC
Confidence            9999999999999999986543  222345677763    4555443333346899999999999884 776 9999999


Q ss_pred             CEeccCCCCCC----ceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe-----------------ecCCee
Q psy11701        163 GKPISQAPPNP----RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL-----------------AHAPEI  221 (745)
Q Consensus       163 g~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~-----------------~~~p~~  221 (745)
                      +..+.......    ......+.|.|.++..+| |.|+|.|.|..+.......+.+.                 ..+|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v  241 (444)
T 1igt_B          163 SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSV  241 (444)
T ss_dssp             TBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEE
T ss_pred             CCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceE
Confidence            87642110000    111123578999999999 99999999998876554444321                 124554


Q ss_pred             -eeCCCceE-EecCceEEEEEEEeecC----CCeEEEeeCCEEccCce---EEE------eecCcEEEcccCCCCCEEEE
Q psy11701        222 -TEAPKDEY-TVDGKTVVLTCRVFGAP----KPEVNWIHNQKELTGGR---YTI------LETGDLKITDVAFADSGEYT  286 (745)
Q Consensus       222 -~~~~~~~~-v~~g~~~~l~C~~~~~p----~~~i~W~~~~~~~~~~~---~~~------~~~~~l~i~~~~~~d~G~Y~  286 (745)
                       ...|.... +.+|+.++|.|.+.+.+    .+.+.|++++..+....   ...      ...+.|.|.++..+|.|.|+
T Consensus       242 ~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~  321 (444)
T 1igt_B          242 FIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFK  321 (444)
T ss_dssp             EEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEE
T ss_pred             EecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEE
Confidence             34443333 57899999999999884    35899999998764321   111      12347999999999999999


Q ss_pred             EEEEeCCceE--EEEEEE--EEeecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcC
Q psy11701        287 CFARNKLGTA--QGSGSL--TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSN  362 (745)
Q Consensus       287 C~~~n~~g~~--~~~~~l--~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~  362 (745)
                      |.|.|..+..  ...+.+  .+..+|.+...+.......+..+.|.|.+.+.+++.+.+.|++++..+............
T Consensus       322 C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~  401 (444)
T 1igt_B          322 CKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDS  401 (444)
T ss_dssp             EEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECT
T ss_pred             EEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCC
Confidence            9999988765  333222  334455543322211112344599999999865544599999999877421111111122


Q ss_pred             Ce------EEEEecCCCCCCEEEEEEEEeCCc
Q psy11701        363 DY------SLTVTKSSELDSGQYTCRAQTELD  388 (745)
Q Consensus       363 ~~------~l~i~~~~~~~~g~y~c~a~n~~g  388 (745)
                      ++      .|.+......|.|.|+|.|.|..-
T Consensus       402 ~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          402 DGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             TSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             CCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence            22      345555555678999999999753

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=267.87  Aligned_cols=273  Identities=28%  Similarity=0.486  Sum_probs=211.0

Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecC---ceEEEccCCC-CCCEEEEEE
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP---NRITIENLRK-SDTGNYGCN  198 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~L~i~~v~~-~d~G~Y~C~  198 (745)
                      ..+|.|...|.+..+.+|+++.|.|.+.|.|.+.++|+|+|..+...... .....+   ..|.|.++.. +|+|.|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~-~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFE-TIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEE-EEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceE-EEEecCCCceEEEEecccccCCCeEEEEE
Confidence            45889999999999999999999999999999999999999988532111 111122   5799999998 999999999


Q ss_pred             EEeCCceEEEEEEEEEeecC------CeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCc----eEEEee
Q psy11701        199 ATNSLGYVYKDVYVNVLAHA------PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG----RYTILE  268 (745)
Q Consensus       199 ~~~~~g~~~~~~~l~v~~~~------p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~----~~~~~~  268 (745)
                      +.|..|.....+.|.|...+      |.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+...    ++....
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~  162 (304)
T 2yd9_A           83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLR  162 (304)
T ss_dssp             EECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECT
T ss_pred             EECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCC
Confidence            99999988778888887532      67788888888999999999999999999999999999887532    555666


Q ss_pred             cCcEEEcccCCCCCEEEEEEEEeCCceEEEE-EEEEEe---ecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEe
Q psy11701        269 TGDLKITDVAFADSGEYTCFARNKLGTAQGS-GSLTVK---EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL  344 (745)
Q Consensus       269 ~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~v~---~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~  344 (745)
                      ++.|.|.++...|+|.|+|.|.|..|..... ..+.|.   .+|.+...|....+..|+.+.|.|.+.+.|.  +.+.|+
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~--p~v~W~  240 (304)
T 2yd9_A          163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPM--PYVKWM  240 (304)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESC--CEEEEE
T ss_pred             CeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCC--CEEEEE
Confidence            7799999999999999999999998876532 445553   5666777777777889999999999999886  679999


Q ss_pred             eCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCC
Q psy11701        345 RGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLE  403 (745)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~  403 (745)
                      +++..+.....  . ......|.+..+  .|.|.|+|.|.|..|.....+.|.|..++.
T Consensus       241 ~~~~~l~~~~~--~-~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  294 (304)
T 2yd9_A          241 QGAEDLTPEDD--M-PVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPK  294 (304)
T ss_dssp             ETTEECSCSSS--C-CBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC------
T ss_pred             ECCEECCCccc--c-cCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence            99988764321  1 122335666655  689999999999999999999998876543

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=100.00  E-value=1.9e-31  Score=275.88  Aligned_cols=311  Identities=17%  Similarity=0.276  Sum_probs=234.8

Q ss_pred             ccCCCCCCceeEEeecCc-eeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeE
Q psy11701        400 VPLEAPSNFTLIQVIDAK-KAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA  478 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~-~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~  478 (745)
                      .|+.+|.++++.. .+.+ ++.|+|+++..    +.+.+|.|+|+.............+ ......+.|.+|.+++.|.|
T Consensus         1 vP~~~P~~l~~~~-~~~~~sv~l~W~~~~~----~~~~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~   74 (375)
T 3t1w_A            1 MPLSPPTNLHLEA-NPDTGVLTVSWERSTT----PDITGYRITTTPTNGQQGNSLEEVV-HADQSSCTFDNLSPGLEYNV   74 (375)
T ss_dssp             -CCCCCEEEEEEE-ETTTTEEEEEEECCSC----SSCCEEEEEEEETTCTTSCCEEEEE-ETTCCEEEECCCCTTCCEEE
T ss_pred             CCCCCCCccEEEe-cCCCeEEEEEEeCCCC----CCeeeEEEEEEECCCCCCcceeEEc-CCCccEEEEcCCcCCCEEEE
Confidence            3789999999988 7888 99999998532    4588999999887654444444555 56788999999999999999


Q ss_pred             EEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCccccccc
Q psy11701        479 RVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY  558 (745)
Q Consensus       479 ~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~  558 (745)
                      +|+|.|..|.+.+.   ...+...+|. |.++.+...+.+++.|+|++|.  ++.+.+|.|+|+..+........     
T Consensus        75 ~V~a~~~~g~s~~~---~~~~~~~~p~-p~~l~~~~~~~~si~l~W~~~~--~~~i~~Y~v~~~~~~~~~~~~~~-----  143 (375)
T 3t1w_A           75 SVYTVKDDKESVPI---SDTIIPEVPQ-LTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAGEGIPIFED-----  143 (375)
T ss_dssp             EEEEEETTEECCCE---EEEECCCCCC-CSCCEEECCCSSEEEEECCCCC--CTTEEEEEEEEEESSSCCSCEEE-----
T ss_pred             EEEEEcCCCCCCcE---EeeEcCCCCC-CceEEEEecCCCeEEEEEECCC--CCCceEEEEEEEECCCCCceeEE-----
Confidence            99999988776553   3444556664 8899999999999999999875  46899999999976543221111     


Q ss_pred             ccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCcceeEEEeecCccccCCCcceEE
Q psy11701        559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYR  638 (745)
Q Consensus       559 ~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~  638 (745)
                      .......++.+.+|.|++.|.|+|.|.|..|.|.++..........+.++.+....++++.|+|++++    ++.+.+|.
T Consensus       144 ~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~t~~~~p~~l~~~~~~~~si~l~W~~p~----~~~i~~Y~  219 (375)
T 3t1w_A          144 FVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFL  219 (375)
T ss_dssp             EECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEESCCSSCEEEEEECCS----SCCCCEEE
T ss_pred             EcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeeeeeecCCCCCceeEEEecccCEEEEEEcCCC----CCCccEEE
Confidence            11556789999999999999999999999999999876544433333344444567899999999764    35689999


Q ss_pred             EEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCe---------------------------
Q psy11701        639 IFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSI---------------------------  691 (745)
Q Consensus       639 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~---------------------------  691 (745)
                      |.|+..+....+.... .......+++.+|.+++.|.|+|.|....+.+....                           
T Consensus       220 v~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W  298 (375)
T 3t1w_A          220 VRYSPVKNEEDVAELS-ISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHW  298 (375)
T ss_dssp             EEEEEGGGTTCCEEEE-ECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEESCCSSCEEEEE
T ss_pred             EEEEeCCCCCCcEEEE-cCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCceeeEEecCCCCCCccEeeeccCCEEEEEE
Confidence            9999765443333222 234458899999999999999999833322221110                           


Q ss_pred             ----------------------EEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCc
Q psy11701        692 ----------------------RELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE  732 (745)
Q Consensus       692 ----------------------~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~  732 (745)
                                            .......+..+++.|.+|.|++.|.|+|+|.|.+|.|++..
T Consensus       299 ~~p~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~s  361 (375)
T 3t1w_A          299 IAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI  361 (375)
T ss_dssp             ECCSSCCSEEEEEEEETTCCSSCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             CCCCcceeeEEEEEEECCCCCcceeEEcCCCccEEEECCCCCCCEEEEEEEEECCCCCCCcee
Confidence                                  11133356788999999999999999999999999998875

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=2.6e-31  Score=275.87  Aligned_cols=261  Identities=26%  Similarity=0.368  Sum_probs=214.7

Q ss_pred             eccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecC--CCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee--
Q psy11701         39 TRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPIN--PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA--  113 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~--  113 (745)
                      .+....+.+|++++|.|.+ .+.|.+.+.|+|++.++.  ...+......++.|.|.+++.+|+|.|+|.+.+..|..  
T Consensus       107 ~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~  186 (382)
T 1cs6_A          107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITK  186 (382)
T ss_dssp             CCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             CCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccc
Confidence            4567789999999999996 567888999999987753  34455555555789999999999999999999865321  


Q ss_pred             --EEEEEEEEEE------ecCeEEe-cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEE
Q psy11701        114 --KSYSIDLSVL------AAPYFTV-EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI  184 (745)
Q Consensus       114 --~~~~~~l~V~------~~p~~~~-~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i  184 (745)
                        .+..+.|.|.      .+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..     ........|.|
T Consensus       187 ~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-----~~~~~~~~L~i  261 (382)
T 1cs6_A          187 SVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-----KWLSSEPLLHI  261 (382)
T ss_dssp             EEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC-----CCSBSSSEEEE
T ss_pred             eeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc-----EEecCCcEEEE
Confidence              1223445543      2455544 36678899999999999999999999999998877653     23345678999


Q ss_pred             ccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceE
Q psy11701        185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY  264 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~  264 (745)
                      .++..+|+|.|+|.|.|..|.....+.|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.....
T Consensus       262 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~  340 (382)
T 1cs6_A          262 QNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR  340 (382)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSS
T ss_pred             ccCChhhCEEEEEEEEcCCCeEEEEEEEEEec-CCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCce
Confidence            99999999999999999999988888888875 77888888888999999999999999999999999999998865433


Q ss_pred             EEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        265 TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK  305 (745)
Q Consensus       265 ~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~  305 (745)
                      .....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       341 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          341 IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            33456789999999999999999999999999988888875

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=100.00  E-value=2.7e-32  Score=271.44  Aligned_cols=261  Identities=18%  Similarity=0.261  Sum_probs=208.0

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      ..|+.+...+.+..+.+|++++|.|.+.|    .+.|+|++..+     ......+..|.|.+++.+|+|.|+|.+.+  
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--   78 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN-----EMVENKKNEWIQEKAEATRTGTYTCSNSN--   78 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS-----CEEEECSSEEEETTCCGGGCEEEEEEESS--
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce-----eeecCCCceEEEeccCHHhCeEEEEEeeC--
Confidence            34556667889999999999999999987    89999999877     12223457999999999999999999988  


Q ss_pred             eeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCC-CeEEE-EeCCEeccCCCCCCce-eecCceEEEccC
Q psy11701        111 GEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPE-PEIHW-VHNGKPISQAPPNPRR-KVGPNRITIENL  187 (745)
Q Consensus       111 g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~-~~v~W-~~~g~~~~~~~~~~~~-~~~~~~L~i~~v  187 (745)
                      |.  +..+.|.|..+|.+...+....+.+|+.+.|.|.+.+ |. +.++| +++|..+...   .+. ....+.|.|.++
T Consensus        79 g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~---~~~~~~~~~~L~i~~v  152 (290)
T 2o26_X           79 GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTD---LTFVPNPKAGITIKNV  152 (290)
T ss_dssp             SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTT---CEEEEETTTEEEEESC
T ss_pred             Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCC---CceeeCCCCCEEEecc
Confidence            43  5678899998887777777888999999999999996 77 89999 5688777532   232 234578999999


Q ss_pred             CCCCCE-EEEEEEEeCCceEEE-EEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeecCCCe-EEEeeCCEEc--
Q psy11701        188 RKSDTG-NYGCNATNSLGYVYK-DVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIHNQKEL--  259 (745)
Q Consensus       188 ~~~d~G-~Y~C~~~~~~g~~~~-~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~--  259 (745)
                      ..+|+| .|+|.|.|..+.... .+.|.|..   .+|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+  
T Consensus       153 ~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~  232 (290)
T 2o26_X          153 KRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQH  232 (290)
T ss_dssp             CGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEE
T ss_pred             cHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCcc
Confidence            999999 999999998655333 36777652   578888888888899999999999999999885 9999988762  


Q ss_pred             --cC-ceE------EEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc
Q psy11701        260 --TG-GRY------TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT  308 (745)
Q Consensus       260 --~~-~~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p  308 (745)
                        .. ...      .....+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          233 IAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             CCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             ceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence              11 111      12334579999999999999999999999999888888887654

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=9.4e-32  Score=279.96  Aligned_cols=382  Identities=13%  Similarity=0.099  Sum_probs=215.9

Q ss_pred             CCCCEEEEEEEEeCCeeeEEEEEE------------EEEEec---CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEE
Q psy11701         96 FSDQGSYTCEVSNGVGEAKSYSID------------LSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV  160 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~~~~~~~~------------l~V~~~---p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~  160 (745)
                      ..|.|.|+|.+.+..+...+..+.            |.....   +.+...|....+.+|+++.|.|.+.+.|.+.+.|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~   83 (423)
T 3qs7_E            4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWV   83 (423)
T ss_dssp             ----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEEE
T ss_pred             cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEE
Confidence            468899999998764433222211            222221   24556667889999999999999999999999999


Q ss_pred             eCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEE
Q psy11701        161 HNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTC  240 (745)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C  240 (745)
                      +++..+...............|.|.+++.+|+|.|+|.|.|..|.....+.|.|.. +|.+. ......+..|+.+.|.|
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-~p~~~-~~~p~~~~~~~~~~L~C  161 (423)
T 3qs7_E           84 FKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN-TLLYT-LRRPYFRKMENQDALVC  161 (423)
T ss_dssp             ETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC------C-EEEEEEEECSSSSCEEE
T ss_pred             ECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEec-Ccccc-ccCCcEeccCCceEEEE
Confidence            99987763221110111123699999999999999999999999888888888874 44332 11122345688889999


Q ss_pred             EEeecCCCeEEEeeCCEEccCceE----EEeecCcEEEcccCCCCCEEEEEEEEeCCceEEE-EEEEEEeecceeecCCC
Q psy11701        241 RVFGAPKPEVNWIHNQKELTGGRY----TILETGDLKITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKEHTHITDQPE  315 (745)
Q Consensus       241 ~~~~~p~~~i~W~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~-~~~l~v~~~p~~~~~p~  315 (745)
                      .+.|.|.+.|.|++++..+.....    .+..... .+   ...|+|.|+|.|.|..|.... .+.|.|..+|..  .+.
T Consensus       162 ~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~-~l---~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~  235 (423)
T 3qs7_E          162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK-VL---HELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLP  235 (423)
T ss_dssp             EEEESSCCEEEEEEC-------------CEEECCS-EE---CCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STT
T ss_pred             EEeeecCCeEEEEECCCCCccccccccccccccce-EE---ecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCC
Confidence            999999999999998875432110    0111111 11   568999999999999988644 366777665544  445


Q ss_pred             cEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCC---eE----EEcCCeEEEEecCCCCCCEEEEEEEEeCCc
Q psy11701        316 DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP---RF----VQSNDYSLTVTKSSELDSGQYTCRAQTELD  388 (745)
Q Consensus       316 ~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~---~~----~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g  388 (745)
                      ...+..|+.+.|.|.+.+.++ .+.+.|++++..+......   .+    .......|.|..+...|.|.|+|.|.|.  
T Consensus       236 ~~~v~~G~~v~L~C~~~g~~p-~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~--  312 (423)
T 3qs7_E          236 QLFLKVGEPLWIRCKAVHVNH-GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH--  312 (423)
T ss_dssp             EEEEETTSCEEEEEEEEESSS-CCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE--
T ss_pred             ceEEeCCCeEEEEEEEEcCCC-CcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC--
Confidence            677899999999999998432 2689999998876421100   00    0122347999999999999999999987  


Q ss_pred             eEEEEEEEEEeccCCC---CCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccC--cee
Q psy11701        389 FIEAQATLTVQVPLEA---PSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG--EST  463 (745)
Q Consensus       389 ~~~~~~~l~v~~pp~~---P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~--~~~  463 (745)
                       ....+.|.|..+|..   |....+ .+..+..+.|.|.....+.       -.+ .|.+++..     +.. ..  ...
T Consensus       313 -~~~~~~L~V~~~p~i~~~~~~~~~-~v~~G~~v~l~C~~~g~P~-------p~i-~W~k~g~~-----l~~-~~~~~~~  376 (423)
T 3qs7_E          313 -PSQSALVTIVEKGFINATNSSEDY-EIDQYEEFCFSVRFKAYPQ-------IRC-TWTFSRKS-----FPC-EQKGLDN  376 (423)
T ss_dssp             -EEEEEEEEEESSCEEEEC---CEE-CCCTTCCCCEEEEEEEESC-------CEE-EEEETTEE-----EEC-BCCBCSS
T ss_pred             -CCceEEEEEEeCCcceEcCCCccE-EecCCCeEEEEEEEEEcCC-------CeE-EEEECCEE-----CCC-ccccccC
Confidence             667777888755421   211111 1144567788887632111       133 34443311     111 00  001


Q ss_pred             EEEe--cccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCC
Q psy11701        464 TTEV--DKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTV  507 (745)
Q Consensus       464 ~~~i--~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p  507 (745)
                      .+.+  ..+.......|.|.|.|..|....+..+.+.   +.|++|
T Consensus       377 ~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~---~~p~~~  419 (423)
T 3qs7_E          377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR---SGTKHH  419 (423)
T ss_dssp             SSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----------
T ss_pred             CcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEe---cCCccc
Confidence            1222  3445567888999999998876544444443   444444

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=100.00  E-value=8.4e-33  Score=293.88  Aligned_cols=351  Identities=17%  Similarity=0.219  Sum_probs=229.6

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEe---c--------------CCCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVP---I--------------NPSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~---i--------------~~~~~~~~~~----~~~~L~   90 (745)
                      ++..+..+.+.+|++++|.|.+.+.+  .+.+.|+|+  +..   +              ....|+.+..    ...+|.
T Consensus         3 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (457)
T 1hzh_H            3 QLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYME   82 (457)
T ss_dssp             EEEECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEE
Confidence            34556678899999999999998876  678999984  321   1              0134665432    224899


Q ss_pred             EccCCCCCCEEEEEEEEeCCe---------e--eEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CC
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVG---------E--AKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PE  154 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g---------~--~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~  154 (745)
                      |.+++.+|+|.|+|.+.+..|         .  .....+.|.|..    +|.+...+....+.+|+.+.|.|.+.|. |.
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  162 (457)
T 1hzh_H           83 LRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (457)
T ss_dssp             ECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSC
T ss_pred             ECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCC
Confidence            999999999999999988754         1  122335677764    5666555544557899999999999886 65


Q ss_pred             -CeEEEEeCCEeccCCCC-----CCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEee------------
Q psy11701        155 -PEIHWVHNGKPISQAPP-----NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA------------  216 (745)
Q Consensus       155 -~~v~W~~~g~~~~~~~~-----~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~------------  216 (745)
                       +.+.|++++..+.....     ........+.|.|.++..+| |.|+|.|.|..+.......+.+..            
T Consensus       163 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~  241 (457)
T 1hzh_H          163 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPA  241 (457)
T ss_dssp             CCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCC
T ss_pred             CeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCC
Confidence             79999999965431100     00001112479999999999 999999999877655444443321            


Q ss_pred             ----cCCee-eeCCCceE-EecCceEEEEEEEeecCCC----eEEEeeCCEEccCceE---EEeecCcEEEccc---CCC
Q psy11701        217 ----HAPEI-TEAPKDEY-TVDGKTVVLTCRVFGAPKP----EVNWIHNQKELTGGRY---TILETGDLKITDV---AFA  280 (745)
Q Consensus       217 ----~~p~~-~~~~~~~~-v~~g~~~~l~C~~~~~p~~----~i~W~~~~~~~~~~~~---~~~~~~~l~i~~~---~~~  280 (745)
                          .+|.+ ...|.... +.+|+.++|.|.+.+.+++    .+.|++++..+.....   ....++.|.+...   ...
T Consensus       242 ~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~  321 (457)
T 1hzh_H          242 PELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQ  321 (457)
T ss_dssp             CCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHH
T ss_pred             ccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHH
Confidence                13444 33443333 5679999999999987553    8999999987754321   2233455555432   244


Q ss_pred             C---CEEEEEEEEeCCceEEEEEEEE----EeecceeecCC-CcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccC
Q psy11701        281 D---SGEYTCFARNKLGTAQGSGSLT----VKEHTHITDQP-EDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF  352 (745)
Q Consensus       281 d---~G~Y~C~~~n~~g~~~~~~~l~----v~~~p~~~~~p-~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~  352 (745)
                      |   .|.|+|.|.|..+.......+.    +..+|.+...+ ....+..|+ +.|.|.+.+.+++.+.+.|++++..+..
T Consensus       322 d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~  400 (457)
T 1hzh_H          322 DWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENN  400 (457)
T ss_dssp             HHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             HccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcc
Confidence            4   9999999998755433332332    23445443332 222223444 9999999998665579999999988752


Q ss_pred             CCCCeEEEcCCe------EEEEecCCCCCCEEEEEEEEeCCc
Q psy11701        353 ESEPRFVQSNDY------SLTVTKSSELDSGQYTCRAQTELD  388 (745)
Q Consensus       353 ~~~~~~~~~~~~------~l~i~~~~~~~~g~y~c~a~n~~g  388 (745)
                      ..........++      .|.+......|.|.|+|.|.|...
T Consensus       401 ~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  442 (457)
T 1hzh_H          401 YKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  442 (457)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             eeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCC
Confidence            211111222222      345555545678999999999764

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=2.2e-30  Score=258.01  Aligned_cols=272  Identities=23%  Similarity=0.385  Sum_probs=218.7

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecC-CCeEEEEe-CCEeccCCCCCCcee---ecCceEEEccCCCCCCEEEEEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLP-EPEIHWVH-NGKPISQAPPNPRRK---VGPNRITIENLRKSDTGNYGCNA  199 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~-~g~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~~  199 (745)
                      ++.+...|....+.+|+++.|.|.+.+.+ .+.+.|++ +|..+..........   ...+.|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            56778889999999999999999999876 68999999 787776432221111   13468999999999999999999


Q ss_pred             EeCCce-EEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEcc---CceEEEeecCcEEEc
Q psy11701        200 TNSLGY-VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKIT  275 (745)
Q Consensus       200 ~~~~g~-~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~---~~~~~~~~~~~l~i~  275 (745)
                      .|..|. ....+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.   ..++....++.|.|.
T Consensus        82 ~n~~g~~~~~~~~l~v~~-~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~  160 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR  160 (291)
T ss_dssp             ECTTSCEEEEEEEEEEEC-CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEET
T ss_pred             EcCCCCeeEEEEEEEeec-cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEc
Confidence            998854 44567777764 7788888888899999999999999999999999999988764   345666677899999


Q ss_pred             ccCCCCCEEEEEEEEeCCce--EEEEEEEEEeecceeecCCC--cEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeecc
Q psy11701        276 DVAFADSGEYTCFARNKLGT--AQGSGSLTVKEHTHITDQPE--DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPID  351 (745)
Q Consensus       276 ~~~~~d~G~Y~C~~~n~~g~--~~~~~~l~v~~~p~~~~~p~--~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~  351 (745)
                      ++...|+|.|+|.+.|..+.  ....+.+.|..+|.+...+.  ...+..|+.+.|.|.+.+.|.  +.+.|++++..+.
T Consensus       161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~--p~i~W~~~g~~~~  238 (291)
T 1qz1_A          161 GIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPE--PTMSWTKDGEPIE  238 (291)
T ss_dssp             TCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESC--CEEEEEETTEECC
T ss_pred             cCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCC--CcEEEEECCEECc
Confidence            99999999999999987643  34567788877777665543  345678999999999999886  6899999999876


Q ss_pred             CCCC--CeEEE-cCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        352 FESE--PRFVQ-SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ  399 (745)
Q Consensus       352 ~~~~--~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~  399 (745)
                      ....  .++.. .....|.|..+...|.|.|+|.|.|..|.....+.|.|.
T Consensus       239 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          239 NEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             CC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence            4321  23333 334689999999999999999999999998888888875

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=100.00  E-value=7.3e-31  Score=280.09  Aligned_cols=351  Identities=15%  Similarity=0.188  Sum_probs=231.6

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEecC-----------------CCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPIN-----------------PSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i~-----------------~~~~~~~~~----~~~~L~   90 (745)
                      .+..|..+.+.+|++++|.|.+.+.+  .+.+.|+|+  +..+.                 ...|+.+..    ...+|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (475)
T 1iga_A            4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG   83 (475)
T ss_pred             eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence            34567788899999999999998764  568999985  22110                 124555432    234899


Q ss_pred             EccCCCCCCEEEEEEEEeCCee-----eEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CC-C-eEE
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGE-----AKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PE-P-EIH  158 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~-----~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~-~-~v~  158 (745)
                      |.+++.+|+|.|+|.+.+..|.     .....+.|.|..    +|.+...+.. .+.+|+.+.|.|.+.|. |. + .|.
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~g~~v~L~C~~~g~~P~~p~~v~  162 (475)
T 1iga_A           84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC-STQPDGNVVIACLVQGFFPQEPLSVT  162 (475)
T ss_pred             ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc-ccCCCCeEEEEEEEeeecCCCceEEE
Confidence            9999999999999999987642     122445677763    4555444322 23689999999999986 65 4 999


Q ss_pred             EEeCCEeccCCCCC------CceeecCceEEEccCCCCCCEEEEEEEEeCCceE-EEEEEEEEee---------------
Q psy11701        159 WVHNGKPISQAPPN------PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV-YKDVYVNVLA---------------  216 (745)
Q Consensus       159 W~~~g~~~~~~~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~-~~~~~l~v~~---------------  216 (745)
                      |++++.........      .......+.|.|..+..+|+|.|+|.|.|..+.. ...+.+.|..               
T Consensus       163 W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~  242 (475)
T 1iga_A          163 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSP  242 (475)
T ss_pred             EcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCC
Confidence            99988543211000      0011112468898999999999999999987642 2223322210               


Q ss_pred             --cCCee-eeCCCceEEecCceEEEEEEEeecCC---CeEEEeeCCEEccCc---eEE------EeecCcEEEcccCCCC
Q psy11701        217 --HAPEI-TEAPKDEYTVDGKTVVLTCRVFGAPK---PEVNWIHNQKELTGG---RYT------ILETGDLKITDVAFAD  281 (745)
Q Consensus       217 --~~p~~-~~~~~~~~v~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~~~---~~~------~~~~~~l~i~~~~~~d  281 (745)
                        .+|.+ ...|....+.+|+.++|.|.+.+.++   +.+.| +++ .+...   ...      ....+.|.|.++..+|
T Consensus       243 ~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~~~-~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d  320 (475)
T 1iga_A          243 SCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TPS-SGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNH  320 (475)
T ss_pred             CCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-CCC-CcCCccccCceECCCCCEEEEEEEEEchHHhcc
Confidence              24444 33344444688999999999998754   58999 433 33211   000      1133469999999999


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEE---eecceeecCCC-cEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCC--C
Q psy11701        282 SGEYTCFARNKLGTAQGSGSLTV---KEHTHITDQPE-DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES--E  355 (745)
Q Consensus       282 ~G~Y~C~~~n~~g~~~~~~~l~v---~~~p~~~~~p~-~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~--~  355 (745)
                      .|.|+|.|.|..+.......+.+   ..+|.+...+. ...+..|+.+.|.|.+.+.+++.+.+.|++++..+....  .
T Consensus       321 ~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  400 (475)
T 1iga_A          321 GKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT  400 (475)
T ss_pred             CCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceee
Confidence            99999999998887544444432   44555443332 223567889999999999765557999999998876331  0


Q ss_pred             CeEEEc---CC------eEEEEecCCCCCCEEEEEEEEeCCce
Q psy11701        356 PRFVQS---ND------YSLTVTKSSELDSGQYTCRAQTELDF  389 (745)
Q Consensus       356 ~~~~~~---~~------~~l~i~~~~~~~~g~y~c~a~n~~g~  389 (745)
                      ......   .+      +.|.|......+.|.|+|.|.|....
T Consensus       401 ~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          401 WASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             cccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            001111   12      34666666667899999999997653

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=100.00  E-value=7.2e-33  Score=281.88  Aligned_cols=273  Identities=28%  Similarity=0.531  Sum_probs=142.1

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeec-CCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      .|...+..+.+..+.+|++++|.|.+.+. |.+.+.|+|+|..|....++.+  .+++|.|.+++.+|+|.|+|.+.+. 
T Consensus         7 ~p~p~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n~-   83 (334)
T 1ry7_B            7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV--GPQRLQVLNASHEDSGAYSCRQRLT-   83 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe--ccceEEEeecccccCEEEEEEEEeC-
Confidence            34444555899999999999999999877 6789999999999987666654  3568999999999999999999987 


Q ss_pred             eeeEEEEEEEEEEec----------------------CeEEe----cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCE
Q psy11701        111 GEAKSYSIDLSVLAA----------------------PYFTV----EPEFINAAEEETVTFECKASGLPEPEIHWVHNGK  164 (745)
Q Consensus       111 g~~~~~~~~l~V~~~----------------------p~~~~----~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~  164 (745)
                      |... ..+.|.|...                      |.+..    .+....+.+|+.+.|.|.+.|.|.+.+.|+++|.
T Consensus        84 ~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~  162 (334)
T 1ry7_B           84 QRVL-CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGR  162 (334)
T ss_dssp             ------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTB
T ss_pred             CeEE-EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCE
Confidence            5433 5677777654                      33321    1234678899999999999999999999999999


Q ss_pred             eccCCCCCCc--eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecC---Ceeee-CCCceEEecCceEEE
Q psy11701        165 PISQAPPNPR--RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHA---PEITE-APKDEYTVDGKTVVL  238 (745)
Q Consensus       165 ~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~---p~~~~-~~~~~~v~~g~~~~l  238 (745)
                      .+........  .......|.|.+++.+|+|.|+|.+.|..|.....+.|.|...+   |.+.. .+....+.+|+.++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l  242 (334)
T 1ry7_B          163 EFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF  242 (334)
T ss_dssp             CCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEE
T ss_pred             ECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEE
Confidence            8875433222  22345689999999999999999999999998888888887533   33332 356778899999999


Q ss_pred             EEEEeecCCCeEEEee----CCEEccCc-e--EEEeec----------CcEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        239 TCRVFGAPKPEVNWIH----NQKELTGG-R--YTILET----------GDLKITDVAFADSGEYTCFARNKLGTAQGSGS  301 (745)
Q Consensus       239 ~C~~~~~p~~~i~W~~----~~~~~~~~-~--~~~~~~----------~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~  301 (745)
                      .|.+.+.|.+.+.|++    ++..+... .  +.....          ..|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus       243 ~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  322 (334)
T 1ry7_B          243 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW  322 (334)
T ss_dssp             CCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEE
T ss_pred             EEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEE
Confidence            9999999999999999    55554321 1  111111          26999999999999999999999999999999


Q ss_pred             EEEeecc
Q psy11701        302 LTVKEHT  308 (745)
Q Consensus       302 l~v~~~p  308 (745)
                      |.|...+
T Consensus       323 l~V~~~~  329 (334)
T 1ry7_B          323 LVVLPAE  329 (334)
T ss_dssp             EEEECSC
T ss_pred             EEEEECC
Confidence            9998654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.98  E-value=4.1e-31  Score=276.90  Aligned_cols=270  Identities=26%  Similarity=0.443  Sum_probs=216.5

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEE-eecCCCeeEEEECCE-ecCCCCCeEeccCCcEEEEccCCCCC-CEEEEEEEEeC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGV-PINPSDRISQGNYGKSLIIKHVEFSD-QGSYTCEVSNG  109 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~-~i~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~  109 (745)
                      |......+....+.+|++++|.|.+ .+.|.+.+.|++++. .+....++.... ++.|.|.+++.+| .|.|+|.+.+.
T Consensus       116 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~l~i~~v~~~d~~G~Y~C~a~n~  194 (404)
T 3p3y_A          116 PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGH-NGDLYFSNVMLQDMQTDYSCNARFH  194 (404)
T ss_dssp             CCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECT-TSCEEESSCCSGGGSSCBEEEEECT
T ss_pred             CccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcC-CCcEEEEeeeeccCCcceEEEEEec
Confidence            4444444566789999999999999 888999999999874 444455555543 4579999999999 59999999987


Q ss_pred             CeeeEE--EEEEEEEEe-------cCeEEec---CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee
Q psy11701        110 VGEAKS--YSIDLSVLA-------APYFTVE---PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV  177 (745)
Q Consensus       110 ~g~~~~--~~~~l~V~~-------~p~~~~~---~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~  177 (745)
                      .+....  ..+.|.|..       +|.+...   +....+.+|+++.|.|.+.+.|.+.+.|+++|..+....  .....
T Consensus       195 ~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~--~~~~~  272 (404)
T 3p3y_A          195 FTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDK--AKFEN  272 (404)
T ss_dssp             TTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTT--EEEEG
T ss_pred             cccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCc--ccccc
Confidence            765432  234556653       2333222   234568999999999999999999999999999886432  13334


Q ss_pred             cCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCE
Q psy11701        178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQK  257 (745)
Q Consensus       178 ~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~  257 (745)
                      .++.|.|.++..+|+|.|+|.|.|..|.....+.|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++.
T Consensus       273 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~  351 (404)
T 3p3y_A          273 FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA-APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGE  351 (404)
T ss_dssp             GGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE-EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTE
T ss_pred             cCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC-CCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCE
Confidence            467999999999999999999999999988888998885 7788888888999999999999999999999999999999


Q ss_pred             EccCce---EEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        258 ELTGGR---YTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE  306 (745)
Q Consensus       258 ~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~  306 (745)
                      .+....   .....++.|.|.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus       352 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          352 PLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             ecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            885432   2233556899999999999999999999999999988888754

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.98  E-value=3.1e-31  Score=263.56  Aligned_cols=281  Identities=15%  Similarity=0.209  Sum_probs=204.7

Q ss_pred             cCCCCCCceeEE----eecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcce
Q psy11701        401 PLEAPSNFTLIQ----VIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKN  476 (745)
Q Consensus       401 pp~~P~~~~~~~----~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y  476 (745)
                      +|..|.++....    ..+.+++.|.|+++++...++.+.+|.|+|+......   ....     .....+.+|.+++.|
T Consensus         3 ~Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~---~~~~-----~~~~~~~~l~p~t~Y   74 (290)
T 3l5i_A            3 RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHL---QNYT-----VNATKLTVNLTNDRY   74 (290)
T ss_dssp             CCSSCCCEEEEEEECSSTTCEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCC---EEEE-----ESSSEEEEEECSSCE
T ss_pred             CCCCCCceeEEecccccCCCceEEEEEccCCchhcCCceEeEEEEEEeCCcCc---eeEe-----cCCcEEEEEcCCceE
Confidence            456666665432    0235899999998766678899999999987765422   1121     234467889999999


Q ss_pred             eEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCccccc
Q psy11701        477 FARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL  556 (745)
Q Consensus       477 ~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~  556 (745)
                      .|+|.|.|..|.|+++..........+|.+|.++.+...+ ++|.|+|++|..   .|.+|.|+|+...........+..
T Consensus        75 ~~~V~A~n~~G~s~~s~~~~~~~~~~~~~p~~~~~~~~~~-~si~l~W~~p~~---~i~~Y~v~~~~~~~~~~~~~~~~~  150 (290)
T 3l5i_A           75 LATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKD-NMLWVEWTTPRE---SVKKYILEWCVLSDKAPCITDWQQ  150 (290)
T ss_dssp             EEEEEEEESSCBCCCEEEEECCTTCCCCCCCEEEEEEEET-TEEEEEEECCSS---CCCEEEEEEEEECSSSCCCCEEEE
T ss_pred             EEEEEEEcCCCCCCCceEEeecccccCCCccceeEEEeCC-CeEEEEEeCCCC---CCCcEEEEEEECCCCCCCCcCeEE
Confidence            9999999999999877533222222456677788877765 699999999865   799999999987654321111111


Q ss_pred             ccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCC---CCCCCCCCCcceeEEEeecCccccCCC
Q psy11701        557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPD---NVEGRGSTPNNLVISWTAMPEIEHNAP  633 (745)
Q Consensus       557 ~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~---~~~~~~~~p~~~~v~W~~~~~~~~~g~  633 (745)
                        +.......+.+.+|.|++.|.|+|.|.|..|.|+++..........+.   .+.+.....+++.|+|++++....+|.
T Consensus       151 --~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~~~~~~~t~~~~P~~~p~~~~~~~~~~sv~l~W~~~~~~~~~g~  228 (290)
T 3l5i_A          151 --EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGF  228 (290)
T ss_dssp             --EETTCSEEECCSCCCTTCEEEEEEEEEETTEECCCEEEEEESSCCCCSSCCCEEEEEECSSCEEEEECCCCHHHHSSC
T ss_pred             --ccCCCcceEEecCcCCccEEEEEEEEEeCCcccccEEEEeEccccCCCCCCeeeEeeccCCEEEEEEcCCChhccCCE
Confidence              224566788899999999999999999999999864433332222221   222223456899999998888889999


Q ss_pred             cceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCC
Q psy11701        634 HFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS  713 (745)
Q Consensus       634 i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  713 (745)
                      |.+|+|+|+..++..                                            ......+..+++.|.+|.|++
T Consensus       229 i~~Y~v~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~L~p~t  264 (290)
T 3l5i_A          229 IRNYTIFYRTIIGNE--------------------------------------------TAVNVDSSHTEYTLSSLTSDT  264 (290)
T ss_dssp             CCEEEEEEEETTSCC--------------------------------------------EEEEEETTCSEEEECSCCTTC
T ss_pred             EEEEEEEEEeCCCCe--------------------------------------------EEEEeCCCceEEEeCCCCCCC
Confidence            999999998652210                                            011125678899999999999


Q ss_pred             cceeEEEEecCcccCCCCcceEEeCCC
Q psy11701        714 KNFARVLAFNGAYNGPPSEIISFVTPE  740 (745)
Q Consensus       714 ~Y~~~v~A~~~~G~g~~s~~~~~~t~~  740 (745)
                      .|.|+|+|.|.+| |++|+.+.|+|+.
T Consensus       265 ~Y~~~V~A~n~~G-g~~s~~~~~~T~~  290 (290)
T 3l5i_A          265 LYMVRMAAYTDEG-GKDGPEFTFTTPK  290 (290)
T ss_dssp             EEEEEEEEEETTE-EEECCCEEEECCC
T ss_pred             EEEEEEEEEeCCC-CCCCCceEeecCC
Confidence            9999999999999 8999999999974

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.98  E-value=5.1e-31  Score=275.22  Aligned_cols=354  Identities=18%  Similarity=0.234  Sum_probs=251.8

Q ss_pred             EEEEecCeEEecCceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEE
Q psy11701        120 LSVLAAPYFTVEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       120 l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      |.|..+|.|...|....+.+|+++.|.|.+.+ .|.+.++|+|+|..+............+++|.|.+++.+|+|.|+|.
T Consensus         1 l~v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (395)
T 1bih_A            1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCF   80 (395)
T ss_dssp             ----CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEE
T ss_pred             CCcCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEE
Confidence            45778999999999999999999999999998 88899999999998875443222334567899999999999999999


Q ss_pred             EEeCCceEEE-EEEEEEee-cCCeeeeCCCceEEecCceEEEEEEE-eecCCCeEEEeeCC---EEcc-----CceEEEe
Q psy11701        199 ATNSLGYVYK-DVYVNVLA-HAPEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQ---KELT-----GGRYTIL  267 (745)
Q Consensus       199 ~~~~~g~~~~-~~~l~v~~-~~p~~~~~~~~~~v~~g~~~~l~C~~-~~~p~~~i~W~~~~---~~~~-----~~~~~~~  267 (745)
                      +.|..|.... .+.+.+.. ..|.+  .+....+.+|+.++|.|.+ .+.|.+.+.|++++   ....     ..++...
T Consensus        81 a~n~~g~~~s~~~~l~v~~~~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  158 (395)
T 1bih_A           81 AETPAGVASSRVISFRKTYLIASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG  158 (395)
T ss_dssp             EEETTEEEECCCEEEEEEEEECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC
T ss_pred             EEeCCCeEEeEEEEEEEEEeecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEc
Confidence            9998887652 24444432 12333  2345567799999999995 78899999999975   2111     4566666


Q ss_pred             ecCcEEEcccCCCCCE---EEEEEEEeCCceEEEEEEEEE---ee----------cceeecCCCcEEEecCCeEEEEEEE
Q psy11701        268 ETGDLKITDVAFADSG---EYTCFARNKLGTAQGSGSLTV---KE----------HTHITDQPEDYEVEAGQSATFRCNA  331 (745)
Q Consensus       268 ~~~~l~i~~~~~~d~G---~Y~C~~~n~~g~~~~~~~l~v---~~----------~p~~~~~p~~~~~~~g~~~~l~C~~  331 (745)
                      .++.|.|.++...|+|   .|+|.+.|..+..........   ..          .|.+  .+....+..|+.+.|.|.+
T Consensus       159 ~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~  236 (395)
T 1bih_A          159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMY  236 (395)
T ss_dssp             TTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEE
T ss_pred             CCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEe
Confidence            7789999999999999   999999998887433222211   11          1222  2456778999999999999


Q ss_pred             EecCCCCcEEEEeeCCeeccCCCCCeEEEc---CCeEEEEecCCCCCCEEEEEEEEeCCceEEE-EEEEEEeccCC---C
Q psy11701        332 VSDPSLKLSIVWLRGSEPIDFESEPRFVQS---NDYSLTVTKSSELDSGQYTCRAQTELDFIEA-QATLTVQVPLE---A  404 (745)
Q Consensus       332 ~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~-~~~l~v~~pp~---~  404 (745)
                      .+.|.  +.+.|++++..+......++...   ....|.|..+...|.|.|+|.|.|..|.... .+.|.|..+|.   .
T Consensus       237 ~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~  314 (395)
T 1bih_A          237 GSNPM--GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQK  314 (395)
T ss_dssp             ECSSC--CCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEEC
T ss_pred             ccCCC--CeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccC
Confidence            98886  56999999988765433444322   2237999999999999999999999998655 78888876653   2


Q ss_pred             CCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEec
Q psy11701        405 PSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN  484 (745)
Q Consensus       405 P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n  484 (745)
                      |.. .. .+..+..+.|.|.....+..       .+ .|..++.......+.+   ....+.|.++...+...|.|.|.|
T Consensus       315 ~~~-~~-~~~~g~~~~l~C~~~g~p~p-------~v-~W~~~g~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N  381 (395)
T 1bih_A          315 PEK-VI-VVKQGQDVTIPCKVTGLPAP-------NV-VWSHNAKPLSGGRATV---TDSGLVIKGVKNGDKGYYGCRATN  381 (395)
T ss_dssp             CCS-EE-EECTTSCEEEECEEEEESCC-------CC-EEEETTEECCSSSEEE---ETTEEEESSCCSTTCEEEEEEEEE
T ss_pred             CCc-ce-EecCCCeEEEEEEECcccCC-------ee-EEEECCEECCCCceEE---ECCEEEEeeCCcccCEEEEEEEEc
Confidence            222 11 11566788898876311111       12 3333332111112233   123889999999999999999999


Q ss_pred             CCCCCCCC
Q psy11701        485 GAYNGPPS  492 (745)
Q Consensus       485 ~~G~g~~S  492 (745)
                      ..|....+
T Consensus       382 ~~G~~~~~  389 (395)
T 1bih_A          382 EHGDKYFE  389 (395)
T ss_dssp             TTEEEEEE
T ss_pred             cCCCceEE
Confidence            98875433

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.98  E-value=1.7e-31  Score=270.35  Aligned_cols=266  Identities=15%  Similarity=0.178  Sum_probs=204.9

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeec---------CCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCE-EE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGT---------PLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG-SY  102 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~---------p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y  102 (745)
                      +.-.........+.+|++++|.|.+.+.         |.+.++|+|++..+....+.   ..+++|.|.+++.+|+| .|
T Consensus        29 ~~c~~~~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~---~~~~~L~i~~v~~~D~Gs~Y  105 (329)
T 3oq3_B           29 PSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR---VKNGDLWIANYTSNDSHRRY  105 (329)
T ss_dssp             TTSEEEEEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT---EETTEEEESSCCGGGGGCCE
T ss_pred             CCcccCCcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce---eecceEEEcCCChHhCCCcE
Confidence            3344455577889999999999999874         55799999999877644443   22568999999999999 99


Q ss_pred             EEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecC-CCeEEEEeCCEeccCCCCCCceeecCce
Q psy11701        103 TCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLP-EPEIHWVHNGKPISQAPPNPRRKVGPNR  181 (745)
Q Consensus       103 ~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~  181 (745)
                      +|.|.+..|......+.+.+..+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|+|++..+...  ..++...++.
T Consensus       106 ~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~--~~~~~~~~~~  183 (329)
T 3oq3_B          106 LCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID--GTKYSQSGQN  183 (329)
T ss_dssp             EEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCS--SSSEEEETTE
T ss_pred             EEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCC--CceEecCCCE
Confidence            999999887655444445555566655544445567899999999999999 8999999999988532  2344444789


Q ss_pred             EEEccCCCCCCEEEEEEEEeC--CceEE----EEEEEEEeecCC---eeeeCCCceEEecCceEEEEEEEeecC---CC-
Q psy11701        182 ITIENLRKSDTGNYGCNATNS--LGYVY----KDVYVNVLAHAP---EITEAPKDEYTVDGKTVVLTCRVFGAP---KP-  248 (745)
Q Consensus       182 L~i~~v~~~d~G~Y~C~~~~~--~g~~~----~~~~l~v~~~~p---~~~~~~~~~~v~~g~~~~l~C~~~~~p---~~-  248 (745)
                      |.|.+++.+|+|.|+|.|.|.  .|...    ..+.|.|...+.   .+. .+....+.+|+.++|.|.+.+.|   .+ 
T Consensus       184 L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i  262 (329)
T 3oq3_B          184 LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDV  262 (329)
T ss_dssp             EEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCC
T ss_pred             EEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCc
Confidence            999999999999999999986  54332    236777775441   222 66678899999999999999998   66 


Q ss_pred             eEEEeeCCEEc-cC-ceEEEe-------ecCcEEEcccCCCCCE-EEEEEEEeCCceEEEEEEEEE
Q psy11701        249 EVNWIHNQKEL-TG-GRYTIL-------ETGDLKITDVAFADSG-EYTCFARNKLGTAQGSGSLTV  304 (745)
Q Consensus       249 ~i~W~~~~~~~-~~-~~~~~~-------~~~~l~i~~~~~~d~G-~Y~C~~~n~~g~~~~~~~l~v  304 (745)
                      .+.|++++..+ .. .+....       ..+.|.|.+++.+|.| .|+|.|.|..|.....+.|.|
T Consensus       263 ~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          263 LIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            88999998874 22 221111       3457999999999999 999999999999888877766

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.98  E-value=1.2e-30  Score=259.67  Aligned_cols=267  Identities=17%  Similarity=0.264  Sum_probs=208.1

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      +|+.+...+....+.+|++++|.|.+.+    .+.|++++...   ........+.+|.|.+++.+|+|.|+|.+.+..+
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   75 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPY---WTLDPESPGSTLTTRNATFKNTGTYRCTELEDPM   75 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSS---SEECCCSSCCEEEESSCCGGGCEEEEEECCC---
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCce---EEEeccCCccEEEEeeeccccCEEEEEEEeccCC
Confidence            4566677888899999999999999986    49999876432   1223334567899999999999999999988766


Q ss_pred             eeEEEEEEEEEEecCe-EEecCceeEeeCCCeEEEEEEEeecCCCe-EEEEe-CCEeccCCCCCCceeecCceEEEccCC
Q psy11701        112 EAKSYSIDLSVLAAPY-FTVEPEFINAAEEETVTFECKASGLPEPE-IHWVH-NGKPISQAPPNPRRKVGPNRITIENLR  188 (745)
Q Consensus       112 ~~~~~~~~l~V~~~p~-~~~~~~~~~v~~G~~~~l~C~~~~~p~~~-v~W~~-~g~~~~~~~~~~~~~~~~~~L~i~~v~  188 (745)
                      .. +..+.|.|..+|. +...+....+.+|+++.|.|.+.+.+.+. +.|++ ++..+....  ......++.|.|.++.
T Consensus        76 ~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~v~  152 (289)
T 3ejj_X           76 AG-STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT--VYFFSPWRGFIIRKAK  152 (289)
T ss_dssp             ---CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTC--CEEEETTTEEEESSCC
T ss_pred             cc-eeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCc--cEEECCCCCEEEeecc
Confidence            54 4778899988776 57778888999999999999999866664 99986 666665221  1223456789999999


Q ss_pred             CCCCEEEEEEEEe-CCceEEEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEee-cCCCeEEEeeCCEEccCce
Q psy11701        189 KSDTGNYGCNATN-SLGYVYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFG-APKPEVNWIHNQKELTGGR  263 (745)
Q Consensus       189 ~~d~G~Y~C~~~~-~~g~~~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~  263 (745)
                      .+|+|.|+|.+.+ ..+.....+.|.|..   .+|.+...+....+.+|+.++|.|.+.+ .|.+.+.|++++..+....
T Consensus       153 ~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~  232 (289)
T 3ejj_X          153 VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL  232 (289)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCE
T ss_pred             cccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccC
Confidence            9999999999994 444455567788874   5788888888888889999999999998 6888999999998876443


Q ss_pred             EEE------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc
Q psy11701        264 YTI------LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT  308 (745)
Q Consensus       264 ~~~------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p  308 (745)
                      ...      ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.+..++
T Consensus       233 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          233 NSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH  283 (289)
T ss_dssp             EEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred             CcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence            221      224579999999999999999999999999999988886654

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.98  E-value=1.1e-30  Score=262.73  Aligned_cols=270  Identities=21%  Similarity=0.269  Sum_probs=208.5

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCC-----eeEEEECCEec-------------CCCCCeEecc-------CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLP-----QTIWSKDGVPI-------------NPSDRISQGN-------YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~-----~v~W~~~~~~i-------------~~~~~~~~~~-------~~~~L~   90 (745)
                      ++..|.++.+..|++++|.|.+.+.+.+     +|+|+|++...             ....++.+..       .+.+|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            4567788889999999999999877655     48999987543             2233343321       235799


Q ss_pred             EccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCC
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQA  169 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~  169 (745)
                      |.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+..|+.+.|.|.+. +.|.+.+.|++++..+...
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~  162 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT  162 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccccc
Confidence            999999999999999976544445577888888999888887777888999999999875 6899999999998776522


Q ss_pred             CCC----CceeecCceEEEccCCCCCCEEEEEEEEeCCceE--EEEEEEEEeecCCeeeeC-CCceEEecCceEEEEEEE
Q psy11701        170 PPN----PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV--YKDVYVNVLAHAPEITEA-PKDEYTVDGKTVVLTCRV  242 (745)
Q Consensus       170 ~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~--~~~~~l~v~~~~p~~~~~-~~~~~v~~g~~~~l~C~~  242 (745)
                      ...    .......+.|.|.++..+|+|.|+|.|.|..+..  ...+.|.|.. +|.+... +....+..|+.++|.|.+
T Consensus       163 ~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-~P~v~~~~~~~~~~~~g~~v~l~C~~  241 (313)
T 4fqp_A          163 SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY-PPEVSISGYDNNWYLGQNEATLTCDA  241 (313)
T ss_dssp             EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE-EEEEEEECCCSCEETTCCCEEEEEEE
T ss_pred             ceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc-CCccccccccceeecCCCeEEEEEEe
Confidence            110    0011112468999999999999999999976553  3445565653 6666543 445566778999999999


Q ss_pred             eecCCC-eEEEeeCCEEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc
Q psy11701        243 FGAPKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT  308 (745)
Q Consensus       243 ~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p  308 (745)
                      .|+|.+ .|.|++++..+....  ...+++|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus       242 ~g~P~p~~v~W~~~~~~l~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  306 (313)
T 4fqp_A          242 RSNPEPTGYNWSTTMGPLPPFA--VAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP  306 (313)
T ss_dssp             EEESCCCEEEEEETTBSCCTTE--EEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             cCCCCCcEEEEEECCEECCCce--EEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence            999988 699999998886543  3356789999999999999999999999999999999998754

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=6.3e-31  Score=264.90  Aligned_cols=261  Identities=21%  Similarity=0.299  Sum_probs=200.7

Q ss_pred             ceeEecCCcEEEEEEEe-ecCCCeeEEEECCEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEE
Q psy11701         42 KEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI  118 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~  118 (745)
                      ...+.+|++++|.|... +.|.+.+.|+|++..+....++.+...+  .+|.|.+++.+|+|.|+|.+.+..|...  ++
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~--s~   87 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS--SY   87 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE--EE
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE--EE
Confidence            45688999999999984 5788999999999999988887766544  6899999999999999999998877554  35


Q ss_pred             EEEEEe------------cCeEEecCc-eeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCCCCCceee---cCce
Q psy11701        119 DLSVLA------------APYFTVEPE-FINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKV---GPNR  181 (745)
Q Consensus       119 ~l~V~~------------~p~~~~~~~-~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~~~~~~~---~~~~  181 (745)
                      .|.|..            +|.+...+. ...+.+|+.+.|.|.+. +.|.+.+.|+++|..+...........   ....
T Consensus        88 ~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~  167 (312)
T 2y23_A           88 LIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE  167 (312)
T ss_dssp             EECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEE
T ss_pred             EEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEE
Confidence            566543            666555444 77899999999999998 889999999999999875432211111   1234


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCceEEEEEEEE------------------EeecCCeeeeCCCceEEecCceEEEEEEEe
Q psy11701        182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVN------------------VLAHAPEITEAPKDEYTVDGKTVVLTCRVF  243 (745)
Q Consensus       182 L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~------------------v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~  243 (745)
                      |.|.+++.+|+|.|+|.+.+..+.......+.                  +...+|.+.... ...+.+|+.++|.|.+.
T Consensus       168 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~  246 (312)
T 2y23_A          168 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVA  246 (312)
T ss_dssp             EEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTTEEEEEEEEE
T ss_pred             EEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCCEEEEEEEEc
Confidence            99999999999999999987554443333321                  011235554333 36788999999999999


Q ss_pred             ecCCC-eEEEeeCCEEcc-CceEEEeec-CcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        244 GAPKP-EVNWIHNQKELT-GGRYTILET-GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK  305 (745)
Q Consensus       244 ~~p~~-~i~W~~~~~~~~-~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~  305 (745)
                      +.|.+ .+.|++++..+. ..++..... ..|.|.++..+|+|.|+|.|.|..|.....+.|.+.
T Consensus       247 ~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          247 NIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             SCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             CCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            99888 999999998876 444443322 489999999999999999999999999888877653

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.97  E-value=6.2e-30  Score=254.70  Aligned_cols=273  Identities=27%  Similarity=0.439  Sum_probs=213.6

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe-CCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEe
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      .+|.+...+.+..+.+|+.+.|.|.+.+.|. .+.|++ +|..+........... ....|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   81 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   81 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence            3678888999999999999999999998775 999999 6776653221111111 124899999999999999999999


Q ss_pred             CCceEE-EEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEcc---CceEEEeecCcEEEccc
Q psy11701        202 SLGYVY-KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKITDV  277 (745)
Q Consensus       202 ~~g~~~-~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~---~~~~~~~~~~~l~i~~~  277 (745)
                      ..|... ..+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.   ..++....++.|.|.++
T Consensus        82 ~~g~~~~~~~~l~v~~-~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v  160 (291)
T 2wim_A           82 AKGQTQEATVVLEIYQ-KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNI  160 (291)
T ss_dssp             SSSCEEEEEEEEEEEC-CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTC
T ss_pred             ccCceEEEEEEEEecC-CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEec
Confidence            888764 456677764 6777777778889999999999999999999999999987764   45666667789999999


Q ss_pred             CCCCCEEEEEEEEeCCce--EEEEEEEEEeecceeecCCC--cEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCC
Q psy11701        278 AFADSGEYTCFARNKLGT--AQGSGSLTVKEHTHITDQPE--DYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE  353 (745)
Q Consensus       278 ~~~d~G~Y~C~~~n~~g~--~~~~~~l~v~~~p~~~~~p~--~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~  353 (745)
                      ...|+|.|+|.+.|..+.  ......+.+..+|.+...+.  ...+..|+.+.|.|.+.+.|.  +.+.|++++..+...
T Consensus       161 ~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~v~W~~~g~~~~~~  238 (291)
T 2wim_A          161 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE--PAISWFRNGKLIEEN  238 (291)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSC--CEEEEEETTEECCCT
T ss_pred             chhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCC--CeEEEEECCEECcCC
Confidence            999999999999998754  34566777777776655544  234578999999999998876  679999999987643


Q ss_pred             CCCeEEE-cCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccC
Q psy11701        354 SEPRFVQ-SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPL  402 (745)
Q Consensus       354 ~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp  402 (745)
                        .++.. .....|.|..+...|.|.|+|.|.|..|.....+.|.+..++
T Consensus       239 --~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  286 (291)
T 2wim_A          239 --EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH  286 (291)
T ss_dssp             --TTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred             --ccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence              23332 345789999999999999999999999999999999887664

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.97  E-value=2.4e-30  Score=262.91  Aligned_cols=277  Identities=20%  Similarity=0.350  Sum_probs=204.8

Q ss_pred             ccCCCCCeeEeeccceeEecCCcEEEEEEEeec----CCCeeEEEECC--E-------------ec--CCCCCeEec---
Q psy11701         28 QNRHAPKQQYVTRKKEVALRNKKVELFCIFGGT----PLPQTIWSKDG--V-------------PI--NPSDRISQG---   83 (745)
Q Consensus        28 ~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~----p~~~v~W~~~~--~-------------~i--~~~~~~~~~---   83 (745)
                      +...+|..++..+..+.+.+|++++|.|.+.+.    +.+.+.|+|++  .             .+  ....|+.+.   
T Consensus         9 ~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~   88 (331)
T 3u83_A            9 QMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPS   88 (331)
T ss_dssp             ------------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCS
T ss_pred             ccCCCCcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccC
Confidence            344566777888889999999999999999776    44579999954  1             11  223566553   


Q ss_pred             cCCcEEEEccCCCCCCEEEEEEEE-eCCeeeEEEEEEEEEEecCeEEe--cCceeEeeCC---CeEEEEEE-EeecCCCe
Q psy11701         84 NYGKSLIIKHVEFSDQGSYTCEVS-NGVGEAKSYSIDLSVLAAPYFTV--EPEFINAAEE---ETVTFECK-ASGLPEPE  156 (745)
Q Consensus        84 ~~~~~L~i~~~~~~d~G~Y~C~~~-~~~g~~~~~~~~l~V~~~p~~~~--~~~~~~v~~G---~~~~l~C~-~~~~p~~~  156 (745)
                      ..+.+|.|.+++.+|+|.|+|.+. +..+. .+..+.|.|..+|.+..  .+....+.+|   +.+.|.|. ..+.|.+.
T Consensus        89 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~  167 (331)
T 3u83_A           89 FTDGTIRLSRLELEDEGVYICEFATFPTGN-RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSV  167 (331)
T ss_dssp             SSBCCEEECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCE
T ss_pred             CCCceEEEcccCcccCcEEEEEEEecCCCc-cEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCce
Confidence            234589999999999999999955 44554 44778999999887744  5666778888   88999998 78899999


Q ss_pred             EEEEeCC--EeccCCC-CCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeee-eCCCceEEec
Q psy11701        157 IHWVHNG--KPISQAP-PNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEIT-EAPKDEYTVD  232 (745)
Q Consensus       157 v~W~~~g--~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~-~~~~~~~v~~  232 (745)
                      +.|++++  ....... .........+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.. +|.+. ..+....+.+
T Consensus       168 i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~-~P~~~~~~~~~~~~~~  246 (331)
T 3u83_A          168 VSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY-EPEVTIEGFDGNWYLQ  246 (331)
T ss_dssp             EEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE-EEEEEEECCCSCCBTT
T ss_pred             EEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec-CCeEEEecCCCceEeC
Confidence            9999953  2211000 0011111234688999999999999999999999888888888875 55555 4445556889


Q ss_pred             CceEEEEEEEeecCCCe-EEEeeCCEEccCceEEEeecCcEEEc-ccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc
Q psy11701        233 GKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKIT-DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT  308 (745)
Q Consensus       233 g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p  308 (745)
                      |+.++|.|.+.+.|.+. +.|++++..+....  ....++|.|. ++..+|+|.|+|.|.|..|.....+.|.|...+
T Consensus       247 g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~--~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  322 (331)
T 3u83_A          247 RMDVKLTCKADANPPATEYHWTTLNGSLPKGV--EAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA  322 (331)
T ss_dssp             CCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--EEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC--
T ss_pred             CCeEEEEEeCcCCCCCCEEEEEECCCcccccc--eecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccc
Confidence            99999999999999997 99999998876542  2356789999 899999999999999999999999999887654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.97  E-value=6.4e-30  Score=250.32  Aligned_cols=238  Identities=21%  Similarity=0.275  Sum_probs=195.9

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      .+...|.+..+.+|++++|.|.+.+.|.+ .+.|+|+|..+..        .+..|.|.+++.+|+|.|+|.+.+..+. 
T Consensus         3 ~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~s-   73 (262)
T 3rjd_A            3 VITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT--------STPSYRITSASVNDSGEYRCQRGLSGRS-   73 (262)
T ss_dssp             EEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC--------CSSEEEESSCCGGGCEEEEEEESSSCCC-
T ss_pred             eEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec--------cCCeEEEecCCcccCeEEEEEEecCCcc-
Confidence            35577888899999999999999988887 9999999999863        3568999999999999999999875544 


Q ss_pred             EEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCC
Q psy11701        114 KSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDT  192 (745)
Q Consensus       114 ~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  192 (745)
                        ..+.|.|..++ +...+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..       ....+.|.|.+++.+|+
T Consensus        74 --~~~~l~v~~~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~-------~~~~~~l~i~~~~~~d~  143 (262)
T 3rjd_A           74 --DPIQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF-------FHWNSNLTILKTNISHN  143 (262)
T ss_dssp             --CCEEEEEECSS-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGC
T ss_pred             --ccEEEEEeccc-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccc-------cCCCCeEEEEECChhhC
Confidence              34778887766 4445556678899999999999 6778889999999998752       23357899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEeec--CCeeeeCCCceEEecCceEEEEEEEeecCC-C----eEEEeeCCEEccCceEE
Q psy11701        193 GNYGCNATNSLGYVYKDVYVNVLAH--APEITEAPKDEYTVDGKTVVLTCRVFGAPK-P----EVNWIHNQKELTGGRYT  265 (745)
Q Consensus       193 G~Y~C~~~~~~g~~~~~~~l~v~~~--~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~-~----~i~W~~~~~~~~~~~~~  265 (745)
                      |.|+|.+.|..+.....+.|.|...  +|.+...+ ...+.+|+.++|.|.+.+.|. +    .+.|++++..+...   
T Consensus       144 G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~---  219 (262)
T 3rjd_A          144 GTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR---  219 (262)
T ss_dssp             EEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE---
T ss_pred             EEEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc---
Confidence            9999999999987777788888753  55565555 566889999999999998875 4    37899999876522   


Q ss_pred             EeecCcEEEcccCCCCCEEEEEEEEeCCceE
Q psy11701        266 ILETGDLKITDVAFADSGEYTCFARNKLGTA  296 (745)
Q Consensus       266 ~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~  296 (745)
                       .....|.|.++..+|+|.|+|.|.|..|..
T Consensus       220 -~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          220 -NTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             -ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             -CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence             244579999999999999999999999864

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.97  E-value=7.1e-34  Score=299.97  Aligned_cols=350  Identities=15%  Similarity=0.182  Sum_probs=230.0

Q ss_pred             EeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Eec----C-------------CCCCeEeccC----CcEEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VPI----N-------------PSDRISQGNY----GKSLII   91 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~i----~-------------~~~~~~~~~~----~~~L~i   91 (745)
                      +..+....+.+|++++|.|.+.+.+  .+.|.|+|++  ..+    .             ...|+.+...    ..+|.|
T Consensus         3 l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   82 (434)
T 1igy_B            3 LQESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHL   82 (434)
T ss_dssp             EECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEE
T ss_pred             eECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEE
Confidence            4556677899999999999998764  6789999863  221    0             1246665332    347999


Q ss_pred             ccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEEEEeCCEe
Q psy11701         92 KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWVHNGKP  165 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W~~~g~~  165 (745)
                      .+++.+|+|.|+|.+.+..+... ..+.|.|..    +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|++++..
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~~~~~-~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~  161 (434)
T 1igy_B           83 SSLTSDDSAVYYCVREGEVPYWG-QGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  161 (434)
T ss_dssp             CSBCGGGCSEECCCCSSSSCCCC-CCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBC
T ss_pred             CCCChHHCEEEEEEEEccccccC-CceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcC
Confidence            99999999999999987532221 335667753    4555444333446899999999999885 776 9999999875


Q ss_pred             ccCCCCC----CceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEee-----------cCCee-eeCCCceE
Q psy11701        166 ISQAPPN----PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA-----------HAPEI-TEAPKDEY  229 (745)
Q Consensus       166 ~~~~~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~-----------~~p~~-~~~~~~~~  229 (745)
                      +......    .......+.|.|.++..+| |.|+|.|.|..+.......+.+..           ..|.+ ...|....
T Consensus       162 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~  240 (434)
T 1igy_B          162 SGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKD  240 (434)
T ss_dssp             SSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHH
T ss_pred             CCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHH
Confidence            3211000    0111123569999999989 999999999988744433332210           00333 33333222


Q ss_pred             -EecCceEEEEEEEeecC----CCeEEEeeCCEEccCceE---EE------eecCcEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        230 -TVDGKTVVLTCRVFGAP----KPEVNWIHNQKELTGGRY---TI------LETGDLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       230 -v~~g~~~~l~C~~~~~p----~~~i~W~~~~~~~~~~~~---~~------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                       +.+|+.++|.|.+.+.+    .+.|.|++++..+.....   ..      ...+.|.|.++..+|.|.|+|.|.|..+.
T Consensus       241 ~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  320 (434)
T 1igy_B          241 TLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFP  320 (434)
T ss_dssp             HHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCS
T ss_pred             hcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCC
Confidence             78899999999999874    347999999876642210   00      11346999999999999999999998875


Q ss_pred             EE--EEEEE--EEeecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCC------eE
Q psy11701        296 AQ--GSGSL--TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND------YS  365 (745)
Q Consensus       296 ~~--~~~~l--~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~------~~  365 (745)
                      ..  ..+.+  .+..+|.+...+.......|+.+.|.|.+.+.+++.+.+.|++++..+............+      ..
T Consensus       321 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~  400 (434)
T 1igy_B          321 APIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSK  400 (434)
T ss_dssp             SCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEE
T ss_pred             CceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEE
Confidence            42  22222  2334454433322222235778999999999755457999999998774211111111122      24


Q ss_pred             EEEecCCCCCCEEEEEEEEeCCc
Q psy11701        366 LTVTKSSELDSGQYTCRAQTELD  388 (745)
Q Consensus       366 l~i~~~~~~~~g~y~c~a~n~~g  388 (745)
                      |.|......|.|.|+|.|.|...
T Consensus       401 l~i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          401 LNVQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             EEEEHHHHHTTCCEEEEEEETTS
T ss_pred             EEECchhccCCCEEEEEEEcCCC
Confidence            56666666679999999999864

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.97  E-value=4.8e-30  Score=267.04  Aligned_cols=347  Identities=23%  Similarity=0.381  Sum_probs=251.8

Q ss_pred             cCeEEecCce-eEeeCCCeEEEEEEEeecCCCeEEEEe-CCEeccCCCCCCceeecCceEEEccCCCCC------CEEEE
Q psy11701        125 APYFTVEPEF-INAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPNRITIENLRKSD------TGNYG  196 (745)
Q Consensus       125 ~p~~~~~~~~-~~v~~G~~~~l~C~~~~~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d------~G~Y~  196 (745)
                      +|.|...|.. ..+.+|+.+.|.|.+.|.|.+.++|+| +|..+.... .......++.|.|.+++.+|      +|.|+
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~-~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~   81 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLVFPPFRAEDYRQEVHAQVYA   81 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBT-TTBEECSTTEEEECCCCGGGCCHHHHEEEEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCC-CceEEcCCceEEecccChhhccccccCceEE
Confidence            6788888765 557899999999999999999999999 788776432 22334467899999999987      99999


Q ss_pred             EEEEeCCceEE-EEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCC---CeEEEeeCCEEcc------CceEEE
Q psy11701        197 CNATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPK---PEVNWIHNQKELT------GGRYTI  266 (745)
Q Consensus       197 C~~~~~~g~~~-~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~------~~~~~~  266 (745)
                      |.|.|..|... ..+.|.+.. +|.+...+....+.+|+.++|.|.+.+.+.   +.+.|++++..+.      ..++..
T Consensus        82 C~a~n~~g~~~s~~~~v~v~~-~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  160 (388)
T 2v5m_A           82 CLARNQFGSIISRDVHVRAVV-AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV  160 (388)
T ss_dssp             EEEEETTEEEECCCEEEEEEC-CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEE
T ss_pred             EEEEccCCeEEecceEEEEcc-ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEE
Confidence            99999988743 346666654 666666777788999999999999987653   6899999987652      346666


Q ss_pred             eecCcEEEcccCCCCC-EEEEEEEEeCCceEE-EE---EEEEEeec-----ceee-cCCCcEEEecCCeEEEEEEEEecC
Q psy11701        267 LETGDLKITDVAFADS-GEYTCFARNKLGTAQ-GS---GSLTVKEH-----THIT-DQPEDYEVEAGQSATFRCNAVSDP  335 (745)
Q Consensus       267 ~~~~~l~i~~~~~~d~-G~Y~C~~~n~~g~~~-~~---~~l~v~~~-----p~~~-~~p~~~~~~~g~~~~l~C~~~~~~  335 (745)
                      ..++.|.|.+++.+|. |.|+|.+.|..+... ..   ..+.|..+     |.++ .......+..|+.+.|.|.+.+.|
T Consensus       161 ~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p  240 (388)
T 2v5m_A          161 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFP  240 (388)
T ss_dssp             CTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEES
T ss_pred             ccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCC
Confidence            7778999999999999 999999999864432 21   24555543     2211 122345678899999999999887


Q ss_pred             CCCcEEEEeeCCeeccC----CCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCCCCCCceeE
Q psy11701        336 SLKLSIVWLRGSEPIDF----ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLI  411 (745)
Q Consensus       336 ~~~~~i~W~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P~~~~~~  411 (745)
                      .  +.+.|++++..+..    ....++. ...+.|.|..+...|.|.|+|.|.|..|.....+.|.|..||.........
T Consensus       241 ~--p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~  317 (388)
T 2v5m_A          241 A--PSFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ  317 (388)
T ss_dssp             C--CEEEEEEECTTSSCEEECCCSSSEE-EETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEE
T ss_pred             C--CEEEEEecCCCCcccccccccCcee-cccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcE
Confidence            6  67999997432210    0122222 234689999999999999999999999998888889888765321111112


Q ss_pred             EeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCC
Q psy11701        412 QVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPP  491 (745)
Q Consensus       412 ~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~  491 (745)
                      .+..+..+.|.|.....+.       -.+ .|.+++.       .+ ......+.|.++.......|+|.|.|..|....
T Consensus       318 ~v~~g~~~~l~C~~~g~p~-------p~i-~W~~~g~-------~i-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  381 (388)
T 2v5m_A          318 TVDFGRPAVFTCQYTGNPI-------KTV-SWMKDGK-------AI-GHSESVLRIESVKKEDKGMYQCFVRNDRESAEA  381 (388)
T ss_dssp             EECTTSCEEEEEEEEEECC-------CEE-EEEETTE-------EC-SCCSSEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             EecCCCCEEEEEEeccccC-------CeE-EEEECCE-------EC-ccCCCEEEEecCChhhCEEEEEEEEcCCCcEEE
Confidence            2256778899998631111       123 3444331       11 234567889999999999999999999987544


Q ss_pred             C
Q psy11701        492 S  492 (745)
Q Consensus       492 S  492 (745)
                      +
T Consensus       382 ~  382 (388)
T 2v5m_A          382 S  382 (388)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.97  E-value=7.4e-30  Score=253.37  Aligned_cols=274  Identities=18%  Similarity=0.289  Sum_probs=206.2

Q ss_pred             EeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCccee
Q psy11701        398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNF  477 (745)
Q Consensus       398 v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~  477 (745)
                      ...+|.+|.++.+.. .+.+++.|+|+++     ++.+.+|.|+|+..... ..+....+ ......+.|.+|.+++.|.
T Consensus        17 ~~~~p~~P~~l~~~~-~~~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~-~~~~~~~~-~~~~~~~~i~~L~p~t~Y~   88 (290)
T 3r8q_A           17 QGPAIPAPTDLKFTQ-VTPTSLSAQWTPP-----NVQLTGYRVRVTPKEKT-GPMKEINL-APDSSSVVVSGLMVATKYE   88 (290)
T ss_dssp             ---CCCCCEEEEEEE-ECSSCEEEEEECC-----SSCCCEEEEEEEESSSS-SCCEEEEE-CTTCCEEEECSCCSSCEEE
T ss_pred             eCCCCCCCCceEEEE-CCCCEEEEEEeCC-----CCCeeEEEEEEEeCCCC-CceEEEEc-CCCccEEEeCCCCCCCEEE
Confidence            345678899999988 8999999999985     35788999988876532 34555556 6678899999999999999


Q ss_pred             EEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccc
Q psy11701        478 ARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP  557 (745)
Q Consensus       478 ~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~  557 (745)
                      |+|.|.|..|.|.++. ..++|.+. |.+|.++.+...+.+++.|+|++|   ++.+.+|.|+|+..+........    
T Consensus        89 ~~V~a~~~~g~s~~s~-~~~~t~~~-~~~P~~l~~~~~~~~sv~l~W~~p---~~~~~~Y~v~~~~~~~~~~~~~~----  159 (290)
T 3r8q_A           89 VSVYALKDTLTSRPAQ-GVVTTLEN-VSPPRRARVTDATETTITISWRTK---TETITGFQVDAVPANGQTPIQRT----  159 (290)
T ss_dssp             EEEEEEETTEECCCEE-EEEECCCC-CCCCEEEEEEEECSSCEEEEEECC---SCCCCEEEEEEEESSSCCCEEEE----
T ss_pred             EEEEEEeCCCCCCCcc-eeEecCCC-CCCCceeEEEEcCCCeEEEEEeCC---CCcccEEEEEEEECCCCcceEEe----
Confidence            9999999999998874 55666544 468899999999999999999987   35899999999987644321111    


Q ss_pred             cccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCcceeEEEeecCccccCCCcceE
Q psy11701        558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKY  637 (745)
Q Consensus       558 ~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y  637 (745)
                       . .....++.|.+|.|++.|.|+|.|.|..|.|.++..........+.++.+.....+++.|+|.++.     |.+.+|
T Consensus       160 -~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~~p~-----~~~~~Y  232 (290)
T 3r8q_A          160 -I-KPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPPR-----ARITGY  232 (290)
T ss_dssp             -E-CTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEEEEETTEEEEEEECCS-----SCCCEE
T ss_pred             -c-CCCccEEEECCCCCCCEEEEEEEEEeCCcccCCEEEEecCCCCCCCccEEEeeCCCEEEEEEeCCC-----CcccEE
Confidence             1 456789999999999999999999999999888544333322233333333456788999998765     467899


Q ss_pred             EEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCccee
Q psy11701        638 RIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA  717 (745)
Q Consensus       638 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~  717 (745)
                      .|.|+..++.. +..                                         .....+..+++.|.+|.|++.|.|
T Consensus       233 ~v~~~~~~~~~-~~~-----------------------------------------~~~~~~~~~~~~i~~L~p~t~Y~~  270 (290)
T 3r8q_A          233 IIKYEKPGSPP-REV-----------------------------------------VPRPRPGVTEATITGLEPGTEYTI  270 (290)
T ss_dssp             EEEEECTTSCC-EEC-----------------------------------------SSCCCTTCCEEEECSCCTTCEEEE
T ss_pred             EEEEEeCCCCc-cee-----------------------------------------EeccCCCccEEEECCCCCCCEEEE
Confidence            99998653211 000                                         001135678899999999999999


Q ss_pred             EEEEecCcccCCCCcceEEeC
Q psy11701        718 RVLAFNGAYNGPPSEIISFVT  738 (745)
Q Consensus       718 ~v~A~~~~G~g~~s~~~~~~t  738 (745)
                      +|+|.|.+|.|++.. ..++|
T Consensus       271 ~V~A~~~~g~s~p~~-~~~~T  290 (290)
T 3r8q_A          271 YVIALKNNQKSEPLI-GRKKT  290 (290)
T ss_dssp             EEEEEETTEECCCEE-EEEEC
T ss_pred             EEEEEeCCCcCCccc-cccCC
Confidence            999999999997743 44443

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.97  E-value=8e-30  Score=252.36  Aligned_cols=269  Identities=16%  Similarity=0.243  Sum_probs=203.0

Q ss_pred             EEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCc
Q psy11701        395 TLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS  474 (745)
Q Consensus       395 ~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~  474 (745)
                      .+....+|.+|.++.+.. .+.+++.|.|+++.     +.+.+|.|+|+..... ..+....+ ......+.|.+|.+++
T Consensus         8 ~~~~~~~p~~P~~l~~~~-~~~~sv~l~W~~~~-----~~~~~Y~v~~~~~~~~-~~~~~~~~-~~~~~~~~i~~L~p~t   79 (283)
T 1tdq_A            8 GGGGIPVIDGPTQILVRD-VSDTVAFVEWTPPR-----AKVDFILLKYGLVGGE-GGKTTFRL-QPPLSQYSVQALRPGS   79 (283)
T ss_dssp             ----CCSSCCCEEEEEEE-ECSSCEEEEEECCS-----SCCSEEEEEEEESSSS-CCCEEEEE-CTTCSEEEECSCCTTC
T ss_pred             ccccccCCCCCcEEEEEe-cCCCeEEEEEECCC-----CceeEEEEEEEEecCC-CCcEEEEe-CCCCCEEEecCCCCCC
Confidence            345567899999999988 88999999999854     5688999988765432 22344555 6678899999999999


Q ss_pred             ceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCccc
Q psy11701        475 KNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLE  554 (745)
Q Consensus       475 ~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~  554 (745)
                      .|.|+|.|.|..|.+.+. ...+.+   +|.+|.++++...+.+++.|+|++|.   +.+.+|.|+|+..++..+.... 
T Consensus        80 ~Y~~~V~a~~~~g~s~~~-~~~~~t---~p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~~~~~~~~~~~-  151 (283)
T 1tdq_A           80 RYEVSISAVRGTNESDAS-STQFTT---EIDAPKNLRVGSRTATSLDLEWDNSE---AEAQEYKVVYSTLAGEQYHEVL-  151 (283)
T ss_dssp             EEEEEEEEEETTEECCCE-EEEEEC---CCCCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEETTCCCCEEEE-
T ss_pred             EEEEEEEEECCCCCCCCe-eEEEEC---CCCCCCceEEEecCCCeEEEEecCCC---CCccEEEEEEEeCCCCcceEEE-
Confidence            999999999998887643 344554   57778999999999999999999986   5799999999987654331111 


Q ss_pred             ccccccCCC---cceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCcceeEEEeecCccccC
Q psy11701        555 RLPYISDPT---TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHN  631 (745)
Q Consensus       555 ~~~~~~~~~---~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~~~v~W~~~~~~~~~  631 (745)
                          + ...   ..++.+.+|.|++.|.|+|.|.|..|.|.++..........+.++.+.....+++.|+|+++     +
T Consensus       152 ----~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~~~~~t~~~~P~~l~~~~~~~~sv~l~W~~p-----~  221 (283)
T 1tdq_A          152 ----V-PKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWTKA-----S  221 (283)
T ss_dssp             ----E-ECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEEEECSSCEEEEEECC-----C
T ss_pred             ----C-CCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcceEEEecCCCCCCCccEEeEecCCEEEEEEeCC-----C
Confidence                1 233   68899999999999999999999999888754433332233333334444678899999864     3


Q ss_pred             CCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEeccccc
Q psy11701        632 APHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVP  711 (745)
Q Consensus       632 g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  711 (745)
                      |.+.+|.|.|+..++.                                            .......+..+++.|.+|.|
T Consensus       222 ~~i~~Y~v~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~i~~L~p  257 (283)
T 1tdq_A          222 GPIDHYRITFTPSSGI--------------------------------------------SSEVTVPRDRTSYTLTDLEP  257 (283)
T ss_dssp             SCCSEEEEEEECSSSC--------------------------------------------CEEEEEESSCSEEEECCCCT
T ss_pred             CcccEEEEEEEcCCCC--------------------------------------------eeEEEeCCCccEEEECCCCC
Confidence            6789999999864221                                            00111246778899999999


Q ss_pred             CCcceeEEEEecCcccCCCCcc
Q psy11701        712 ASKNFARVLAFNGAYNGPPSEI  733 (745)
Q Consensus       712 ~~~Y~~~v~A~~~~G~g~~s~~  733 (745)
                      ++.|.|+|+|.|.+|.|+++..
T Consensus       258 ~t~Y~~~V~A~~~~g~s~~~~~  279 (283)
T 1tdq_A          258 GAEYIISITAERGRQQSLESTV  279 (283)
T ss_dssp             TCCEEEEEEEEETTEECCCEEE
T ss_pred             CCEEEEEEEEEcCCCCCcceee
Confidence            9999999999999999998764

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=1.2e-31  Score=273.34  Aligned_cols=270  Identities=18%  Similarity=0.253  Sum_probs=211.7

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEe-------ecCCCeeEEEECCEec--CCCCCeEeccCCcEEEEccCCCCCCEEEEE
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFG-------GTPLPQTIWSKDGVPI--NPSDRISQGNYGKSLIIKHVEFSDQGSYTC  104 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~-------g~p~~~v~W~~~~~~i--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (745)
                      +.+...+.+..+.+|++++|.|.+.       +.|.+.+.|+|++..+  ....+..+...+++|.|.+++.+|+|.|+|
T Consensus        19 p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   98 (339)
T 3o4o_C           19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVC   98 (339)
T ss_dssp             EEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEEC
T ss_pred             HhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEE
Confidence            4567888999999999999999997       8899999999999874  332122222345689999999999999999


Q ss_pred             EEEeCCeeeEEEEEEEEEEecCeEE--ecCceeEeeCCCeEEEEEE-----EeecCCCeEEEEeCCEeccCCCCCCceee
Q psy11701        105 EVSNGVGEAKSYSIDLSVLAAPYFT--VEPEFINAAEEETVTFECK-----ASGLPEPEIHWVHNGKPISQAPPNPRRKV  177 (745)
Q Consensus       105 ~~~~~~g~~~~~~~~l~V~~~p~~~--~~~~~~~v~~G~~~~l~C~-----~~~~p~~~v~W~~~g~~~~~~~~~~~~~~  177 (745)
                      .+.+..|... ..+.|.|..+|...  .......+.+|+.+.|.|.     +.+.|.+.+.|+|+|..+...........
T Consensus        99 ~~~n~~g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~  177 (339)
T 3o4o_C           99 TTRNASYCDK-MSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR  177 (339)
T ss_dssp             CEEETTEEEE-EEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECT
T ss_pred             EEECCcceEE-EEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcC
Confidence            9999887555 77888888766432  2233457889999999999     78888999999999998874432212222


Q ss_pred             cCceEEEccCCCCCCEEEEEEEEeCCc----eEEEEEEEEEeec----CCeeeeCCCceEEecCceEEEEEEE---eecC
Q psy11701        178 GPNRITIENLRKSDTGNYGCNATNSLG----YVYKDVYVNVLAH----APEITEAPKDEYTVDGKTVVLTCRV---FGAP  246 (745)
Q Consensus       178 ~~~~L~i~~v~~~d~G~Y~C~~~~~~g----~~~~~~~l~v~~~----~p~~~~~~~~~~v~~g~~~~l~C~~---~~~p  246 (745)
                      ..+.|.|.+++.+|+|.|+|.+.|..|    .....+.|.|...    +|.+...+....+.+|+.++|.|.+   .+.|
T Consensus       178 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P  257 (339)
T 3o4o_C          178 GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTP  257 (339)
T ss_dssp             TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCC
T ss_pred             CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCC
Confidence            335899999999999999999999877    4566677887642    5677777777788999999999999   8888


Q ss_pred             -CCeEEEeeCCEEcc----------CceEEEeecC------cEEEcccCCCCC-EEEEEEEEeCCceEEEEEEEEE
Q psy11701        247 -KPEVNWIHNQKELT----------GGRYTILETG------DLKITDVAFADS-GEYTCFARNKLGTAQGSGSLTV  304 (745)
Q Consensus       247 -~~~i~W~~~~~~~~----------~~~~~~~~~~------~l~i~~~~~~d~-G~Y~C~~~n~~g~~~~~~~l~v  304 (745)
                       .+.+.|++++..+.          ..++....++      .|.|.++..+|. |.|+|.|.|..|..+..+.+.+
T Consensus       258 ~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          258 LTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             SSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred             CCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence             77999999887643          2233333344      799999999997 9999999999999876665544

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=1.5e-30  Score=266.40  Aligned_cols=265  Identities=23%  Similarity=0.297  Sum_probs=176.3

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC-----------CeeEEEECCE------ecC---CCCCeEeccCCcEEEEccCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL-----------PQTIWSKDGV------PIN---PSDRISQGNYGKSLIIKHVE   95 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~-----------~~v~W~~~~~------~i~---~~~~~~~~~~~~~L~i~~~~   95 (745)
                      ......++.+.+|++++|.|.+.+.|.           +.+.|+|++.      .+.   ...++.  ..+..|.|.+++
T Consensus        10 ~~~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~   87 (349)
T 4dep_C           10 GLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS--KEKDVLWFRPTL   87 (349)
T ss_dssp             EECCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEE--EETTEEEESSCC
T ss_pred             ccceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEe--ecCCEEEEccCC
Confidence            334467788999999999999987654           8999999884      222   123333  335589999999


Q ss_pred             CCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEE----ecCceeEeeCCCeEEEEEEE-----eecCCCeEEEEeCCEec
Q psy11701         96 FSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT----VEPEFINAAEEETVTFECKA-----SGLPEPEIHWVHNGKPI  166 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~----~~~~~~~v~~G~~~~l~C~~-----~~~p~~~v~W~~~g~~~  166 (745)
                      .+|+|.|+|.|.+..+... ..+.|.|..+|.+.    ..+....+.+|+.+.|.|.+     .+.|.+.++|+|+|..+
T Consensus        88 ~~D~G~Y~C~a~n~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l  166 (349)
T 4dep_C           88 LNDTGNYTCMLRNTTYCSK-VAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKI  166 (349)
T ss_dssp             GGGCEEEEEEEECSSCEEE-EEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEEC
T ss_pred             hhhCEEEEEEEecCCceEE-EEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEEC
Confidence            9999999999999877665 56888888766432    22446678899999999985     67889999999999988


Q ss_pred             cCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC-ceE---EEEEEEEEeec-----CCeeeeCCCce--EEecCce
Q psy11701        167 SQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL-GYV---YKDVYVNVLAH-----APEITEAPKDE--YTVDGKT  235 (745)
Q Consensus       167 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~-g~~---~~~~~l~v~~~-----~p~~~~~~~~~--~v~~g~~  235 (745)
                      ...   .........|.|.+++.+|+|.|+|.|.|.. |..   ...+.|.|...     +|.+...+...  .+.+|+.
T Consensus       167 ~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~  243 (349)
T 4dep_C          167 QNF---NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE  243 (349)
T ss_dssp             CSC---SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC---------------
T ss_pred             CCc---cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCc
Confidence            632   3444556789999999999999999999986 543   45566777643     56665555433  7789999


Q ss_pred             EEEEEEEe----ecCCCeEEEeeCCEEccC--ceEEE------------eecCcEEEcccCCCCC-EEEEEEEEeCCceE
Q psy11701        236 VVLTCRVF----GAPKPEVNWIHNQKELTG--GRYTI------------LETGDLKITDVAFADS-GEYTCFARNKLGTA  296 (745)
Q Consensus       236 ~~l~C~~~----~~p~~~i~W~~~~~~~~~--~~~~~------------~~~~~l~i~~~~~~d~-G~Y~C~~~n~~g~~  296 (745)
                      ++|.|.+.    +.|.+.+.|++++..+..  .++..            .....|.|.++..+|. |.|+|.|.|..|..
T Consensus       244 v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~  323 (349)
T 4dep_C          244 LLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV  323 (349)
T ss_dssp             -CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEE
T ss_pred             EEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcE
Confidence            99999998    467889999999887654  22111            1123599999999999 99999999999999


Q ss_pred             EEEEEEEEee
Q psy11701        297 QGSGSLTVKE  306 (745)
Q Consensus       297 ~~~~~l~v~~  306 (745)
                      ...+.|.|..
T Consensus       324 ~~~~~l~v~~  333 (349)
T 4dep_C          324 AKAAKVKQKV  333 (349)
T ss_dssp             EEECC-----
T ss_pred             EEEEEEeeec
Confidence            8888888865

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.97  E-value=1.3e-28  Score=246.84  Aligned_cols=280  Identities=21%  Similarity=0.283  Sum_probs=225.9

Q ss_pred             cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC--ceEEEe--ecC--cEEEcccCCCCCEEEEEEEE
Q psy11701        217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG--GRYTIL--ETG--DLKITDVAFADSGEYTCFAR  290 (745)
Q Consensus       217 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~--~~~~~~--~~~--~l~i~~~~~~d~G~Y~C~~~  290 (745)
                      .+|.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+..  .++...  .++  .|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            478888889999999999999999999999999999999988753  344432  223  79999999999999999999


Q ss_pred             eCCceEEEEEEEEEeecceeecC-----CCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEc-CCe
Q psy11701        291 NKLGTAQGSGSLTVKEHTHITDQ-----PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQS-NDY  364 (745)
Q Consensus       291 n~~g~~~~~~~l~v~~~p~~~~~-----p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~  364 (745)
                      |..|.....+.|.|..+|.+...     +....+..|+.+.|.|.+.+.|.  +.+.|++++..+........... ...
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~~~~~~~~  160 (305)
T 2nzi_A           83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD--PVITWQKGQDLIDNNGHYQVIVTRSFT  160 (305)
T ss_dssp             ETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESC--CEEEEEESSSBCCSSSSCEEEECSSEE
T ss_pred             cCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCC--CEEEEEECCEECCCCCcEEEEEcCCce
Confidence            99999888899999877765332     35577889999999999999886  68999999888764333333322 346


Q ss_pred             EEEEec-CCCCCCEEEEEEEEeCCceEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEE
Q psy11701        365 SLTVTK-SSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTW  443 (745)
Q Consensus       365 ~l~i~~-~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~  443 (745)
                      .|.|.. +...|.|.|+|.|.|..|.....+.|.+..+|.+|.++.+.. ....++.|.|.++ ..+.+..+..|.++++
T Consensus       161 ~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~-~~~~~v~l~w~~p-~~~g~~~i~~y~v~~~  238 (305)
T 2nzi_A          161 SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSD-VSRDSVNLTWTEP-ASDGGSKITNYIVEKC  238 (305)
T ss_dssp             EEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEES-CCSSCEEEEEECC-SCCSBSCEEEEEEEEE
T ss_pred             EEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeee-ccCCEEEEEEcCC-ccCCCCceeEEEEEEe
Confidence            899998 999999999999999999999999999999999999988876 7889999999984 3345567999999887


Q ss_pred             eccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceE-EeCCCCCC
Q psy11701        444 TEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIIS-FVTPEGVP  504 (745)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~-~~t~~~~P  504 (745)
                      ....  ..|.....  .....++|.+|.+++.|.|+|.|.|..|.|.+|.... +++.+++|
T Consensus       239 ~~~~--~~w~~~~~--~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~~t~~~~p  296 (305)
T 2nzi_A          239 ATTA--ERWLRVGQ--ARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKT  296 (305)
T ss_dssp             ETTS--CCEEEEEE--ESSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCEECCC---
T ss_pred             cCCC--CccEECcc--ccCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCEEcCCccc
Confidence            7644  33433332  2367899999999999999999999999999987654 44444444

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.97  E-value=1.1e-29  Score=253.62  Aligned_cols=280  Identities=20%  Similarity=0.177  Sum_probs=207.7

Q ss_pred             CCCcEEEecCCeEEEEEEEEec-----CCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCC
Q psy11701        313 QPEDYEVEAGQSATFRCNAVSD-----PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL  387 (745)
Q Consensus       313 ~p~~~~~~~g~~~~l~C~~~~~-----~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~  387 (745)
                      .|.+..+..|++++|.|.+.+.     ..+.+.|.|++++..+... .........+.|.|.++... .|.|+|.|.+..
T Consensus        10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~~~~~~~L~i~~~~~~-~g~Y~C~a~~~g   87 (303)
T 1i1r_A           10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTIINRTASSVTFTDIASL-NIQLTCNILTFG   87 (303)
T ss_dssp             ESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEEETTEEEEEECSCCCS-EEEEEEEEEETT
T ss_pred             ccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeeeCCcEEEEEEcCcCCC-ceEEEEecccCC
Confidence            4556778999999999999864     1224789999999887532 22333333468999999887 499999998853


Q ss_pred             ceE--EEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEE
Q psy11701        388 DFI--EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTT  465 (745)
Q Consensus       388 g~~--~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~  465 (745)
                      +..  ...+.+.+..||.+|.++.+.. .+.+++.|+|+++...   +.+.+|.|+|+.......  ..... ......+
T Consensus        88 ~~~~~~~~~~l~v~~~P~~P~~l~~~~-~~~~~v~l~W~~~~~~---~~~~~Y~v~~~~~~~~~~--~~~~~-~~~~~~~  160 (303)
T 1i1r_A           88 QLEQNVYGITIISGLPPEKPKNLSCIV-NEGKKMRCEWDGGRET---HLETNFTLKSEWATHKFA--DCKAK-RDTPTSC  160 (303)
T ss_dssp             TEEEEEEEEEEEEECCCCCCEEEEEEE-ETTSCCEEEEECCSCC---SSCCEEEEEEEETTEECC--CEECC-SSCTTEE
T ss_pred             CcceEEEEEEEeccCCCCCCeeeEEEE-CCCCcEEEEccCCCCC---CCCcCEEEEEEecCCCCc--cCCCc-CCCceEE
Confidence            222  3446778889999999999877 7778999999986432   346799999876532211  11112 4456789


Q ss_pred             Eeccc-ccCcceeEEEEEecCCCCCCCCcceEEeC-CCCCCCCCCceeEEEc--CCceEEEEeeCCCCCCCceeeEEEEE
Q psy11701        466 EVDKF-VPASKNFARVLAFNGAYNGPPSEIISFVT-PEGVPGTVQSLEAIPL--GSSAFYLKWVKPEQPNGVLMGYKIKY  541 (745)
Q Consensus       466 ~i~~L-~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t-~~~~P~~p~~~~~~~~--~~~~i~l~W~~p~~~~g~i~~Y~v~~  541 (745)
                      +|.+| .+++.|.|+|.|.|..|.+.++. ..+.+ ...+|++|.++.+...  +.+++.|+|++|...+|.|.+|.|+|
T Consensus       161 ~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~-~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y  239 (303)
T 1i1r_A          161 TVDYSTVYFVNIEVWVEAENALGKVTSDH-INFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQY  239 (303)
T ss_dssp             ECSSCCCTTSCEEEEEEEEETTEEEECCC-EEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGGTSCEEEEEEE
T ss_pred             EECCcCcccccEEEEEEEEcCCCCcccCC-EEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCCCcccEEEEEEE
Confidence            99999 99999999999999999986433 33433 2357888988888755  67899999999987788999999999


Q ss_pred             EEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCC
Q psy11701        542 QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNP  605 (745)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~  605 (745)
                      +..+...|.....   .........+.|.+|.|++.|+|+|+|.|.+|.|++|+++......++
T Consensus       240 ~~~~~~~w~~~~~---~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~  300 (303)
T 1i1r_A          240 RTKDASTWSQIPP---EDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY  300 (303)
T ss_dssp             EETTCSSCEECCG---GGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECC
T ss_pred             EeCCCCCceEEcc---ccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCC
Confidence            9876544332210   000335578999999999999999999999999999987765555544

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=8.6e-31  Score=264.08  Aligned_cols=260  Identities=21%  Similarity=0.286  Sum_probs=202.3

Q ss_pred             cceeEecCCcEEEEEEEeecC-CCeeEEEECCEecC----CCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701         41 KKEVALRNKKVELFCIFGGTP-LPQTIWSKDGVPIN----PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS  115 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p-~~~v~W~~~~~~i~----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~  115 (745)
                      ....+.+|++++|.|.+.+.| .+.+.|+|++..+.    ...++...  +++|.|.+++.+|+|.|+|.+.+..|... 
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~-   89 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH--KEKLWFVPAKVEDSGHYYCVVRNSSYCLR-   89 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEEC--SSBEECTTCCGGGCSCCEECCCSSSCCCC-
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEecc--CCeEEECCCChhhCEEEEEEEeCCceEEE-
Confidence            356799999999999998887 77999999986542    23444433  45899999999999999999998877655 


Q ss_pred             EEEEEEEE-ecCeEEecC---ceeEeeCCCeEEEEEEE------eecCCCeEEEEeCCEeccCCCCCCceeecCceEEEc
Q psy11701        116 YSIDLSVL-AAPYFTVEP---EFINAAEEETVTFECKA------SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE  185 (745)
Q Consensus       116 ~~~~l~V~-~~p~~~~~~---~~~~v~~G~~~~l~C~~------~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~  185 (745)
                      ..+.+.+. .+|.+...+   ....+.+|+++.|.|.+      .+.|.+.+.|+|+|..+...  ..+....++.|.|.
T Consensus        90 ~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~--~~~~~~~~~~L~i~  167 (315)
T 1itb_B           90 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD--NIHFSGVKDRLIVM  167 (315)
T ss_dssp             EECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCC--SSSEEEETTEEEES
T ss_pred             EEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCc--cceEeecCceEEEE
Confidence            44455543 345443332   23568899999999998      78899999999999998643  23455567899999


Q ss_pred             cCCCCCCEEEEEEEE-eCCceEE---EEEEEEEe----ecCCeeeeCCCc-eEEecCceEEEEEEEeecCCCeEEEeeCC
Q psy11701        186 NLRKSDTGNYGCNAT-NSLGYVY---KDVYVNVL----AHAPEITEAPKD-EYTVDGKTVVLTCRVFGAPKPEVNWIHNQ  256 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~-~~~g~~~---~~~~l~v~----~~~p~~~~~~~~-~~v~~g~~~~l~C~~~~~p~~~i~W~~~~  256 (745)
                      +++.+|+|.|+|.|. |..|...   ..+.+.+.    ..+|.+...+.. ..+.+|+.++|.|.+.+.|.+.+.|++++
T Consensus       168 ~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g  247 (315)
T 1itb_B          168 NVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNG  247 (315)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETT
T ss_pred             eceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECC
Confidence            999999999999999 7777763   33444444    256777666554 46889999999999999999999999999


Q ss_pred             EEccCc------eEEEe----------ecCcEEEcccCCCC-CEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        257 KELTGG------RYTIL----------ETGDLKITDVAFAD-SGEYTCFARNKLGTAQGSGSLTVK  305 (745)
Q Consensus       257 ~~~~~~------~~~~~----------~~~~l~i~~~~~~d-~G~Y~C~~~n~~g~~~~~~~l~v~  305 (745)
                      ..+...      .+...          ..+.|.|.++..+| +|.|+|.|.|..|.....+.|.|+
T Consensus       248 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          248 SVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             EECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             EECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            987642      12111          12379999999999 999999999999999988888775

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.97  E-value=8.6e-28  Score=248.42  Aligned_cols=357  Identities=15%  Similarity=0.188  Sum_probs=256.7

Q ss_pred             CCCcEEEe--cCC-eEEEEEEEEec-CCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCc
Q psy11701        313 QPEDYEVE--AGQ-SATFRCNAVSD-PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELD  388 (745)
Q Consensus       313 ~p~~~~~~--~g~-~~~l~C~~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g  388 (745)
                      .|.++.+.  ... .+.|.|..... ....+.+.|...+..-.. ............+.+.++.....+.|++.|.|..|
T Consensus         5 ~P~~l~~~~~~~~~sv~l~W~~~~~~~~~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   83 (375)
T 3t1w_A            5 PPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGN-SLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDK   83 (375)
T ss_dssp             CCEEEEEEEETTTTEEEEEEECCSCSSCCEEEEEEEETTCTTSC-CEEEEEETTCCEEEECCCCTTCCEEEEEEEEETTE
T ss_pred             CCCccEEEecCCCeEEEEEEeCCCCCCeeeEEEEEEECCCCCCc-ceeEEcCCCccEEEEcCCcCCCEEEEEEEEEcCCC
Confidence            44445442  244 68888876532 233467777764431110 11122233556889999999999999999999887


Q ss_pred             eEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEec
Q psy11701        389 FIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVD  468 (745)
Q Consensus       389 ~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~  468 (745)
                      .+..........+| +|.++.+.. .+.+++.|+|+++.    ++.+.+|.|+|+..+.. .......+ ......+++.
T Consensus        84 ~s~~~~~~~~~~~p-~p~~l~~~~-~~~~si~l~W~~~~----~~~i~~Y~v~~~~~~~~-~~~~~~~~-~~~~~~~~i~  155 (375)
T 3t1w_A           84 ESVPISDTIIPEVP-QLTDLSFVD-ITDSSIGLRWTPLN----SSTIIGYRITVVAAGEG-IPIFEDFV-DSSVGYYTVT  155 (375)
T ss_dssp             ECCCEEEEECCCCC-CCSCCEEEC-CCSSEEEEECCCCC----CTTEEEEEEEEEESSSC-CSCEEEEE-CTTCCEEEEE
T ss_pred             CCCcEEeeEcCCCC-CCceEEEEe-cCCCeEEEEEECCC----CCCceEEEEEEEECCCC-CceeEEEc-CCCcceEEEe
Confidence            55443333333333 578998877 78999999999853    35789999988865543 22333444 6678899999


Q ss_pred             ccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcc
Q psy11701        469 KFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK  548 (745)
Q Consensus       469 ~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~  548 (745)
                      +|.+++.|.|+|.|.|..|.|.++. ....|   .|.+|.++.+...+.+++.|+|++|.  ++.+.+|.|+|+..+...
T Consensus       156 ~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t---~~~~p~~l~~~~~~~~si~l~W~~p~--~~~i~~Y~v~~~~~~~~~  229 (375)
T 3t1w_A          156 GLEPGIDYDISVITLINGGESAPTT-LTQQT---AVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNEE  229 (375)
T ss_dssp             CCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CCCCCEEEEEESCCSSCEEEEEECCS--SCCCCEEEEEEEEGGGTT
T ss_pred             CCCCCCEEEEEEEEEeCCcccCCee-eeeec---CCCCCceeEEEecccCEEEEEEcCCC--CCCccEEEEEEEeCCCCC
Confidence            9999999999999999999998877 44444   34478899999899999999999974  467999999999876432


Q ss_pred             cCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCcceeEEEeecCcc
Q psy11701        549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEI  628 (745)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~~~v~W~~~~~~  628 (745)
                      ......    + .....++.+.+|.|++.|.|+|.|.|..|.|.++..........+..+.+.....+++.|+|+++.  
T Consensus       230 ~~~~~~----~-~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~~p~--  302 (375)
T 3t1w_A          230 DVAELS----I-SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR--  302 (375)
T ss_dssp             CCEEEE----E-CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEESCCSSCEEEEEECCS--
T ss_pred             CcEEEE----c-CCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCceeeEEecCCCCCCccEeeeccCCEEEEEECCCC--
Confidence            211111    2 456689999999999999999999999999988755444333344444454567899999998763  


Q ss_pred             ccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEE
Q psy11701        629 EHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELI  695 (745)
Q Consensus       629 ~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~  695 (745)
                         |.+.+|.|.|+..++..... ..........+++.||.+++.|.|+|.|....|.++.......
T Consensus       303 ---~~~~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~s~~~~  365 (375)
T 3t1w_A          303 ---ATITGYRIRHHPEHFSGRPR-EDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS  365 (375)
T ss_dssp             ---SCCSEEEEEEEETTCCSSCE-EEEEETTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEE
T ss_pred             ---cceeeEEEEEEECCCCCcce-eEEcCCCccEEEECCCCCCCEEEEEEEEECCCCCCCceeeeeE
Confidence               57899999999765423222 2333455688999999999999999999998888876554443

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.97  E-value=3.4e-30  Score=258.74  Aligned_cols=267  Identities=20%  Similarity=0.302  Sum_probs=196.9

Q ss_pred             ccceeEecCCcEEEEEEEeec-CCCeeEEEECCEecC---------------C--CCCeEecc---CCcEEEEccCCCCC
Q psy11701         40 RKKEVALRNKKVELFCIFGGT-PLPQTIWSKDGVPIN---------------P--SDRISQGN---YGKSLIIKHVEFSD   98 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~~~~i~---------------~--~~~~~~~~---~~~~L~i~~~~~~d   98 (745)
                      ++++.+.+|++++|.|.+.+. +.+.|+|+|++....               .  ..|+.+..   .+.+|.|.+++.+|
T Consensus         6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   85 (308)
T 4fom_A            6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSD   85 (308)
T ss_dssp             CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGG
T ss_pred             CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHH
Confidence            346789999999999998654 445799998643211               0  13343322   23579999999999


Q ss_pred             CEEEEEEEEeCCeeeEEEEEEEEEEecCeEE--ecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCC--C
Q psy11701         99 QGSYTCEVSNGVGEAKSYSIDLSVLAAPYFT--VEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPN--P  173 (745)
Q Consensus        99 ~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~--~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~--~  173 (745)
                      +|.|+|.|.+..+...+..+.+.+...|.+.  ..+.......|+.+.|.|.+ .|.|.+.++|++++..+......  .
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~  165 (308)
T 4fom_A           86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN  165 (308)
T ss_dssp             CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred             CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence            9999999998754444466778887766543  34555566788999999986 67899999999999877532111  1


Q ss_pred             ceeecCceEEEccCCCCCCEEEEEEEEeCCceE--EEEEEEEEeecCCeeeeCC-CceEEecCceEEEEEEEeecCCC-e
Q psy11701        174 RRKVGPNRITIENLRKSDTGNYGCNATNSLGYV--YKDVYVNVLAHAPEITEAP-KDEYTVDGKTVVLTCRVFGAPKP-E  249 (745)
Q Consensus       174 ~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~--~~~~~l~v~~~~p~~~~~~-~~~~v~~g~~~~l~C~~~~~p~~-~  249 (745)
                      ......+.|.|.++..+|+|.|+|.|.|..+..  ...+.|.|.. +|.+...+ ....+..|+.++|.|.+.+.|.+ .
T Consensus       166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~  244 (308)
T 4fom_A          166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY-APEVSVTGYDGNWFVGRKGVNLKCNADANPPPFK  244 (308)
T ss_dssp             SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE-EEEECCBCCCSCEETTCCSCEEECCEEEESCEEE
T ss_pred             ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec-CCeeEEcccceeeeeccccEEEEEEEecCCCCcE
Confidence            111223579999999999999999999987653  4445566654 55555443 44566778999999999999988 6


Q ss_pred             EEEeeCCEEccCceEEEeecC-cEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecce
Q psy11701        250 VNWIHNQKELTGGRYTILETG-DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH  309 (745)
Q Consensus       250 i~W~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~  309 (745)
                      +.|++++..+.....  ..++ .|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.++|.
T Consensus       245 v~W~k~~~~~~~~~~--~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          245 SVWSRLDGQWPDGLL--ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             EECCBSSSCCCSSCB--CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred             EEEEECCeECCCcEE--EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence            999999887754421  2223 356788999999999999999999999999999988763

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=255.66  Aligned_cols=271  Identities=20%  Similarity=0.282  Sum_probs=205.0

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .+|.|.. |....+.+|+++.|.|.+.+. |.+.+.|+|+|..+..... .....+...|.|.+++.+|+|.|+|.+.|.
T Consensus         6 ~~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   83 (317)
T 2y25_A            6 TGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK-HDFKDGICTLLITEFSKKDAGIYEVILKDD   83 (317)
T ss_dssp             SCCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC------CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred             CCCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCc-EEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence            3666763 445889999999999999886 7789999999999874332 223345579999999999999999999999


Q ss_pred             CceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEee----------cCCCeEEEeeCCEEccC-ceEEEeecC-
Q psy11701        203 LGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG----------APKPEVNWIHNQKELTG-GRYTILETG-  270 (745)
Q Consensus       203 ~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~----------~p~~~i~W~~~~~~~~~-~~~~~~~~~-  270 (745)
                      .|.....+.|.|.. +|.+...+....+..|+.+.|.|.+.+          .|.+.+.|++++..+.. .++.....+ 
T Consensus        84 ~g~~~~~~~l~v~~-~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  162 (317)
T 2y25_A           84 RGKDKSRLKLVDEA-FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE  162 (317)
T ss_dssp             SCEEEEEECCSTHH-HHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSS
T ss_pred             CCcEEEEEEEEEec-CccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCC
Confidence            98877766665543 233322233334556777777777666          67889999999988753 344443333 


Q ss_pred             --cEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEee--------------------cce-eecCCCcEEEecCCeEEE
Q psy11701        271 --DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE--------------------HTH-ITDQPEDYEVEAGQSATF  327 (745)
Q Consensus       271 --~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~--------------------~p~-~~~~p~~~~~~~g~~~~l  327 (745)
                        .|.|.++..+|+|.|+|.|.|..|.....+.+.+..                    .|. ....|....+..|+.+.|
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l  242 (317)
T 2y25_A          163 QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNL  242 (317)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCE
T ss_pred             EEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEE
Confidence              499999999999999999999998888777776542                    122 223455678899999999


Q ss_pred             EEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCC----eEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEecc
Q psy11701        328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND----YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP  401 (745)
Q Consensus       328 ~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~p  401 (745)
                      .|.+.+.|.  +.+.|++++..+...  .++.....    ..|.|..+...|.|.|+|.|.|..|.....+.|.|..|
T Consensus       243 ~C~~~g~p~--p~i~W~~~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          243 TCNVWGDPP--PEVSWLKNEKALASD--DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             EEEEECSSC--CEEEEEESSSEECCC--SSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEecCCC--CEEEEEECCEeCCCC--CcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence            999998886  679999999888643  33333222    48999999999999999999999999999999988754

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.97  E-value=4.8e-29  Score=244.01  Aligned_cols=237  Identities=21%  Similarity=0.334  Sum_probs=184.6

Q ss_pred             eEecCCcEEEEEEEee-cCCC--eeEEEECCEecCCCCCeEeccCCcEEEEccC---CCCCCEE--EEEEEEeCCeeeEE
Q psy11701         44 VALRNKKVELFCIFGG-TPLP--QTIWSKDGVPINPSDRISQGNYGKSLIIKHV---EFSDQGS--YTCEVSNGVGEAKS  115 (745)
Q Consensus        44 ~v~~G~~~~l~C~~~g-~p~~--~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~---~~~d~G~--Y~C~~~~~~g~~~~  115 (745)
                      .+.+|++++|.|.+.| .|.+  ++.|+|+|..+..  ++  ...+..|.+..+   +.+|+|.  |+|.+.+..|... 
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~--~~--~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~-   88 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TV--TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE-   88 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC--EE--EECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEE-
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc--eE--eeCCCeEEEEeecccccccCCcceEEEEEecCCCCcE-
Confidence            7899999999999998 7776  9999999999874  22  233446666665   7888884  9999999888755 


Q ss_pred             EEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEE
Q psy11701        116 YSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNY  195 (745)
Q Consensus       116 ~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  195 (745)
                      ..+.|.|...|.....+....+.+|+.+.|.|.+.  |.+.++|  +|..+...       ...+.|.|..+..+|+|.|
T Consensus        89 ~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~-------~~~~~l~i~~~~~~~~g~Y  157 (265)
T 2oz4_A           89 TLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL-------GPRAQLLLKATPEDNGRSF  157 (265)
T ss_dssp             EEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCC-------SSEECCEEECCGGGTTEEE
T ss_pred             EEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCC-------CCcEEEEEccccccCCceE
Confidence            67888887644333334566788999999999998  8889999  77776311       1235688999999999999


Q ss_pred             EEEEEeCC-ceEE---EEEEEEEeecCCeeeeC--CCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeec
Q psy11701        196 GCNATNSL-GYVY---KDVYVNVLAHAPEITEA--PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILET  269 (745)
Q Consensus       196 ~C~~~~~~-g~~~---~~~~l~v~~~~p~~~~~--~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  269 (745)
                      +|.|.|.. |...   ..+.|.|.. +|.+...  |....+.+|+.++|.|.+.|.|.+.+.|++++..       ....
T Consensus       158 ~C~a~n~~~g~~~~~s~~~~l~V~~-~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~-------~~~~  229 (265)
T 2oz4_A          158 SCSATLEVAGQLIHKNQTRELRVLY-GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF-------PLPI  229 (265)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEEEEE-EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTE-------ECCT
T ss_pred             EEEEEcCCCCCcccccccEEEEEEe-CCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcc-------cCCC
Confidence            99998544 6554   557777765 5554433  5567889999999999999999999999999872       2233


Q ss_pred             CcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE  306 (745)
Q Consensus       270 ~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~  306 (745)
                      +.+.  .++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       230 g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          230 GESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             TSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence            4443  3777999999999999999999999998864

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.97  E-value=2.8e-28  Score=269.75  Aligned_cols=321  Identities=13%  Similarity=0.134  Sum_probs=219.3

Q ss_pred             CCCEEEEEEEEeCCceEEEEEEEEEeccCCCC-CCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccC----C
Q psy11701        374 LDSGQYTCRAQTELDFIEAQATLTVQVPLEAP-SNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKD----G  448 (745)
Q Consensus       374 ~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P-~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~----~  448 (745)
                      ...|.+.| +.|..|.........+...|.+| .++.+.. .+.+++.|+|+++.. ....++. |.|+|+....    .
T Consensus       133 ~c~g~~~C-c~n~cG~~C~~P~~~~~~~P~~P~~~l~v~~-~~~~sv~l~W~pp~~-~~~~~i~-Y~V~~r~~~g~~~~~  208 (680)
T 1zlg_A          133 ECSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTE-LQSGQLEVKWSSKFN-ISIEPVI-YVVQRRWNYGIHPSE  208 (680)
T ss_pred             cCCCcccc-ccccccccccccceeeecccccccccceEEe-ccCceEEEEEeCCCC-CCCCCEE-EEEEEEECCCCCcCc
Confidence            45566777 45566654443333456778888 7999988 889999999998532 2345566 9999987532    1


Q ss_pred             --CCceeEEEEccCceeEEEecccccCcceeEEEEEecCCC-CCCCCcceEEeCCC--CCCCCCCceeEEEc--CCc---
Q psy11701        449 --EGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAY-NGPPSEIISFVTPE--GVPGTVQSLEAIPL--GSS---  518 (745)
Q Consensus       449 --~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G-~g~~S~~~~~~t~~--~~P~~p~~~~~~~~--~~~---  518 (745)
                        ...|..+.  ......++|.+|.|++.|.|+|.|.|..| .+..+....+++.+  .+|++|.++++...  +.+   
T Consensus       209 ~~~~~w~~v~--~~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~  286 (680)
T 1zlg_A          209 DDATHWQTVA--QTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSV  286 (680)
T ss_pred             cccCceEEEE--ecCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCce
Confidence              12333333  24567899999999999999999999999 55555556677754  57889999999888  778   


Q ss_pred             eEEEEeeCCCCCCCceeeEEEEEEEc-CCc---ccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCc
Q psy11701        519 AFYLKWVKPEQPNGVLMGYKIKYQSV-KGT---KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES  594 (745)
Q Consensus       519 ~i~l~W~~p~~~~g~i~~Y~v~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S  594 (745)
                      +|.|+|++|.+.+|+|.+|.|+|+.. +..   ....+...  .+ ....++++|.+|.|++.|.|+|.|+|..|.|++|
T Consensus       287 sv~l~W~pP~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~--~v-~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S  363 (680)
T 1zlg_A          287 TVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRK--TT-DGFQNSVILEKLQPDCDYVVELQAITYWGQTRLK  363 (680)
T ss_pred             EEEEEecCCCCCCCceeEEEEEEEecccccccCCccceEEE--EE-cCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCC
Confidence            99999999987889999999999832 211   11112111  12 4456899999999999999999999999999988


Q ss_pred             ce---eeecccCCC---CCCCCCCCCCcceeE-----------EEeecCccccCCCcceEEEEEeccCCCCCCCccCccc
Q psy11701        595 KY---LFYVPFKNP---DNVEGRGSTPNNLVI-----------SWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLD  657 (745)
Q Consensus       595 ~~---~~~~~~~~~---~~~~~~~~~p~~~~v-----------~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~  657 (745)
                      ..   +.+.+...+   .++.+....++++.|           +|.+|..  . +.+.+|.|+|.....+          
T Consensus       364 ~~~~~v~~~T~~~~P~p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~--~-~~~~~y~v~w~~~~~~----------  430 (680)
T 1zlg_A          364 SAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFY--Q-DGQLQVKVYWKKTEDP----------  430 (680)
T ss_pred             CCceeEEEECCCCCCCccccccccccCccccccccccCCCccccccCCcc--c-CCcceEEEEEeCCCCC----------
Confidence            76   333322221   222333345566665           9997753  2 2357999999865321          


Q ss_pred             cccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCC
Q psy11701        658 WRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGP  729 (745)
Q Consensus       658 ~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~  729 (745)
                                  ....|.|+........ ...............+++.|.+|.|++.|.|+|+|.|.+|.|+
T Consensus       431 ------------~v~~Y~V~w~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~  489 (680)
T 1zlg_A          431 ------------TVNRYHVRWFPEACAH-NRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSK  489 (680)
T ss_pred             ------------ccceEEEEEeeeeccc-CCCCcceeeeeeccCceEEecCCCCCCeEEEEEEEecCCCCCC
Confidence                        1245666432110000 0000011122245678999999999999999999999999775

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=8.9e-28  Score=257.39  Aligned_cols=348  Identities=16%  Similarity=0.220  Sum_probs=223.8

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC----CeeEEEEC--CEecC----------------CCCCeEecc----CCcEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL----PQTIWSKD--GVPIN----------------PSDRISQGN----YGKSL   89 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~----~~v~W~~~--~~~i~----------------~~~~~~~~~----~~~~L   89 (745)
                      .+..|..+.+.+|++++|.|.+.+.+.    ..+.|+|+  |..+.                -..|+.+..    ...+|
T Consensus         3 ~l~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   82 (512)
T 1zvo_C            3 QLQESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSL   82 (512)
T ss_pred             EEECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEE
Confidence            345677888999999999999987543    57999985  32110                024555432    12589


Q ss_pred             EEccCCCCCCEEEEEEEEeCCe-----------e-eEEEEEEEEEEe----cCeEEe-cCceeEeeCCCeEEEEEEEeec
Q psy11701         90 IIKHVEFSDQGSYTCEVSNGVG-----------E-AKSYSIDLSVLA----APYFTV-EPEFINAAEEETVTFECKASGL  152 (745)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~~g-----------~-~~~~~~~l~V~~----~p~~~~-~~~~~~v~~G~~~~l~C~~~~~  152 (745)
                      .|.+++.+|+|.|+|.+.+..+           . .....+.|.|..    +|.+.. .+.......|+.+.|.|.+.|.
T Consensus        83 ~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~  162 (512)
T 1zvo_C           83 NLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGY  162 (512)
T ss_pred             EECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEee
Confidence            9999999999999999987532           1 112335677763    454432 2222212357899999999885


Q ss_pred             -CCC-eEEEEeCCEeccCCCCCCcee------ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEE-----------EEE
Q psy11701        153 -PEP-EIHWVHNGKPISQAPPNPRRK------VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV-----------YVN  213 (745)
Q Consensus       153 -p~~-~v~W~~~g~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~-----------~l~  213 (745)
                       |.+ .++|++++...... ......      ...+.|.|.....+ +|.|+|.|.|..+......           .+.
T Consensus       163 ~P~p~~v~W~~~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~  240 (512)
T 1zvo_C          163 HPTSVTVTWYMGTQSQPQR-TFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSV  240 (512)
T ss_pred             ecCceEEEEEcCcccCceE-ecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEE
Confidence             665 89999976432100 011111      11246889888877 9999999999887655443           222


Q ss_pred             Eee---------------------------------------------------cCCee-eeCCCceEEecCceEEEEEE
Q psy11701        214 VLA---------------------------------------------------HAPEI-TEAPKDEYTVDGKTVVLTCR  241 (745)
Q Consensus       214 v~~---------------------------------------------------~~p~~-~~~~~~~~v~~g~~~~l~C~  241 (745)
                      +..                                                   .+|.+ ...|....+.+|+.++|.|.
T Consensus       241 l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~  320 (512)
T 1zvo_C          241 PTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCF  320 (512)
T ss_pred             EeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEE
Confidence            221                                                   12333 23334344667999999999


Q ss_pred             EeecCC--CeEEEeeCCEEccCc----eEEEeec------CcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEE-----
Q psy11701        242 VFGAPK--PEVNWIHNQKELTGG----RYTILET------GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV-----  304 (745)
Q Consensus       242 ~~~~p~--~~i~W~~~~~~~~~~----~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v-----  304 (745)
                      +.+..+  ..|+|++++..+...    ......+      ..|.|.....+|.|.|+|.|.|..+... ...+..     
T Consensus       321 v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~  399 (512)
T 1zvo_C          321 VVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQ  399 (512)
T ss_pred             EeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCC
Confidence            988633  389999999876521    1111122      3489999988999999999999876543 222221     


Q ss_pred             -eecceeecCCCcEEEecCCeEE-EEEEEEecCCCCcEEEEeeCCeeccCCCC--CeEEEcCC-------eEEEEecCCC
Q psy11701        305 -KEHTHITDQPEDYEVEAGQSAT-FRCNAVSDPSLKLSIVWLRGSEPIDFESE--PRFVQSND-------YSLTVTKSSE  373 (745)
Q Consensus       305 -~~~p~~~~~p~~~~~~~g~~~~-l~C~~~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~-------~~l~i~~~~~  373 (745)
                       ..+|.+...+...   .|+.+. |.|.+.+.+++.+.+.|.+++..+.....  .......+       ..|.+.....
T Consensus       400 ~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~  476 (512)
T 1zvo_C          400 APVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPS  476 (512)
T ss_pred             CCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhc
Confidence             1234332222211   688899 99999997776788999999988764211  11122222       2355665666


Q ss_pred             CCCEEEEEEEEeCCce
Q psy11701        374 LDSGQYTCRAQTELDF  389 (745)
Q Consensus       374 ~~~g~y~c~a~n~~g~  389 (745)
                      .+.|.|+|.|.|....
T Consensus       477 ~~~g~YtC~v~h~~l~  492 (512)
T 1zvo_C          477 PQPATYTCVVSHEDSR  492 (512)
T ss_pred             CCCCeEEEEEEecCCC
Confidence            6799999999998654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=2.8e-29  Score=254.23  Aligned_cols=262  Identities=19%  Similarity=0.241  Sum_probs=181.0

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeec-CCCeeEEEECCEecC---------CCCCeEec-------cCCcEEEEccCC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKDGVPIN---------PSDRISQG-------NYGKSLIIKHVE   95 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~~~~i~---------~~~~~~~~-------~~~~~L~i~~~~   95 (745)
                      +..+...|....+.+|++++|.|.+.+. |.+.|.|+|++.++.         ...++...       ....+|.|.+++
T Consensus         3 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~   82 (327)
T 2wng_A            3 ELQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT   82 (327)
T ss_dssp             CCCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred             eeEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence            3456677889999999999999999887 888999999886532         11244432       334579999999


Q ss_pred             CCCCEEEEEEEEeCCeeeE----EEEEEEEEEecCeE-EecCceeEeeCCCeEEEEEEEeecCCC--eEEEEeCCEeccC
Q psy11701         96 FSDQGSYTCEVSNGVGEAK----SYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASGLPEP--EIHWVHNGKPISQ  168 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~~~----~~~~~l~V~~~p~~-~~~~~~~~v~~G~~~~l~C~~~~~p~~--~v~W~~~g~~~~~  168 (745)
                      .+|+|.|+|.+.+..+...    +..+.|.|..+|.. ...+....+.+|+.+.|.|.+.+.|++  .++|+++|..+..
T Consensus        83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~  162 (327)
T 2wng_A           83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSD  162 (327)
T ss_dssp             GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             cccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccc
Confidence            9999999999998755321    23467788765542 122223568899999999999987665  8999999998864


Q ss_pred             CCCC------CceeecCceEEEccCCCCCCEEEEEEEEeCCceE---EEEEEEEE-eecCCeeeeCCCceEEecCceEEE
Q psy11701        169 APPN------PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV---YKDVYVNV-LAHAPEITEAPKDEYTVDGKTVVL  238 (745)
Q Consensus       169 ~~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~---~~~~~l~v-~~~~p~~~~~~~~~~v~~g~~~~l  238 (745)
                      ....      .......+.|.|.....+|+|.|+|.|.|..+..   ...+.+.+ ...+|.+...+..  +.+|+.++|
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l  240 (327)
T 2wng_A          163 FQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNV  240 (327)
T ss_dssp             EEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEE
T ss_pred             cccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEEE
Confidence            3210      0111112357787777778899999999987652   33333322 2346776655444  678999999


Q ss_pred             EEEEeecC-CC-eEEEeeCCEEccCc---eEEEeecC------cEEEcccCCCCCEEEEEEEEeCCceE
Q psy11701        239 TCRVFGAP-KP-EVNWIHNQKELTGG---RYTILETG------DLKITDVAFADSGEYTCFARNKLGTA  296 (745)
Q Consensus       239 ~C~~~~~p-~~-~i~W~~~~~~~~~~---~~~~~~~~------~l~i~~~~~~d~G~Y~C~~~n~~g~~  296 (745)
                      .|.+.+.+ .+ .+.|+++|..+...   ......++      .|.|..+..+|.|.|+|.|.|..+..
T Consensus       241 ~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          241 TCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             EEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            99999854 43 79999999877432   12222222      47888888999999999999998864

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.97  E-value=8e-30  Score=254.05  Aligned_cols=266  Identities=19%  Similarity=0.269  Sum_probs=201.2

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      .|+.+...+.+..+.+|++++|.|.+.+.    +.|++++..   ..++......++|.|.+++.+|+|.|+|.+.+..+
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~   75 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP---HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPL   75 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS---SCEECCBTTEEEEEESSCCGGGCSCEEECCCC---
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC---ceEEeccCceEEEEEcccccccCEEEEEEEccCCC
Confidence            35667788889999999999999999873    999976532   11222223346899999999999999999998776


Q ss_pred             eeEEEEEEEEEEecCe-EEecCceeEeeCCCeEEEEEEEeecCC--CeEEEEeC-CEeccCCCCCCceeecCceEEEccC
Q psy11701        112 EAKSYSIDLSVLAAPY-FTVEPEFINAAEEETVTFECKASGLPE--PEIHWVHN-GKPISQAPPNPRRKVGPNRITIENL  187 (745)
Q Consensus       112 ~~~~~~~~l~V~~~p~-~~~~~~~~~v~~G~~~~l~C~~~~~p~--~~v~W~~~-g~~~~~~~~~~~~~~~~~~L~i~~v  187 (745)
                      .. +..+.|.|..+|. +...+....+.+|+.+.|.|.+.+ |.  +.+.|+++ +..+....  ......+..|.|.++
T Consensus        76 ~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~  151 (292)
T 4dkd_C           76 GG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHT--NYSFSPWHGFTIHRA  151 (292)
T ss_dssp             -C-CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSC--CEECCSSSCCEETTC
T ss_pred             Cc-ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCC--cccccCCceEEECCC
Confidence            65 4778899988776 466678888999999999999987 44  68999997 44443211  112223456999999


Q ss_pred             CCCCCEEEEEEEEeCCceEEE-EEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeecCC-CeEEEeeCCEEccCc
Q psy11701        188 RKSDTGNYGCNATNSLGYVYK-DVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVNWIHNQKELTGG  262 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g~~~~-~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~  262 (745)
                      ..+|+|.|+|.+.|..+.... .+.|.|..   .+|.+...+....+.+|+.++|.|.+.+.|. ..+.|++++..+...
T Consensus       152 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~  231 (292)
T 4dkd_C          152 KFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP  231 (292)
T ss_dssp             CGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCC
T ss_pred             CHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccC
Confidence            999999999999988775543 57777764   3788888888877789999999999998765 478899988765422


Q ss_pred             eEEE------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc
Q psy11701        263 RYTI------LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT  308 (745)
Q Consensus       263 ~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p  308 (745)
                      ....      ...+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|....
T Consensus       232 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~  283 (292)
T 4dkd_C          232 QQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA  283 (292)
T ss_dssp             BEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             ccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence            2111      123479999999999999999999999999999888887643

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.96  E-value=1.2e-28  Score=244.92  Aligned_cols=264  Identities=16%  Similarity=0.226  Sum_probs=204.9

Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      ..+|.|...+....+.+|+++.|.|.+.+    .+.|+|++..+.      ......+.|.|.+++.+|+|.|+|.+.| 
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~------~~~~~~~~L~i~~~~~~d~G~Y~C~~~n-   78 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE------MVENKKNEWIQEKAEATRTGTYTCSNSN-   78 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC------EEEECSSEEEETTCCGGGCEEEEEEESS-
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee------eecCCCceEEEeccCHHhCeEEEEEeeC-
Confidence            34688887888889999999999999987    899999998761      1223348999999999999999999999 


Q ss_pred             CceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCC-CeEEEe-eCCEEccC-ceEEEeecCcEEEcccCC
Q psy11701        203 LGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPK-PEVNWI-HNQKELTG-GRYTILETGDLKITDVAF  279 (745)
Q Consensus       203 ~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~-~~i~W~-~~~~~~~~-~~~~~~~~~~l~i~~~~~  279 (745)
                       |. ...+.|.|.. +|.+...+....+.+|+.+.|.|.+.+ |. +.+.|+ +++..+.. .++.....+.|.|.++..
T Consensus        79 -g~-~~~~~l~V~~-~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~  154 (290)
T 2o26_X           79 -GL-TSSIYVFVRD-PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKR  154 (290)
T ss_dssp             -SC-EEEEEEEEEC-SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCG
T ss_pred             -Cc-cEEEEEEEeC-CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccH
Confidence             44 6667888875 444446677788899999999999985 77 899994 67777654 344555567899999999


Q ss_pred             CCCE-EEEEEEEeCCceEE-EEEEEEEe----ecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeec---
Q psy11701        280 ADSG-EYTCFARNKLGTAQ-GSGSLTVK----EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI---  350 (745)
Q Consensus       280 ~d~G-~Y~C~~~n~~g~~~-~~~~l~v~----~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~---  350 (745)
                      +|+| .|+|.|.|..+... ..+.|.|.    .+|.+...+....+..|+.+.|.|.+.+.|.+ ..+.|++++..+   
T Consensus       155 ~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p-~~i~W~~~~~~~~~~  233 (290)
T 2o26_X          155 AYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTS-VNSMWLKMNPQPQHI  233 (290)
T ss_dssp             GGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTT-CEEEEEEESSSEEEC
T ss_pred             HHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcc-eeEEEecCCCCCccc
Confidence            9999 99999999865533 35777776    66777777777788999999999999988762 359999988763   


Q ss_pred             -cCCCCCeEE----EcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccC
Q psy11701        351 -DFESEPRFV----QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPL  402 (745)
Q Consensus       351 -~~~~~~~~~----~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp  402 (745)
                       .........    ......|.|..+...|.|.|+|.|.|..|.....+.|.|..+|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          234 AQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             CCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             eeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence             221111111    2234689999999999999999999999999888888876553

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.96  E-value=1.4e-27  Score=246.12  Aligned_cols=353  Identities=15%  Similarity=0.170  Sum_probs=248.3

Q ss_pred             cCCCcEEEec--CC-eEEEEEEEEec-CCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCC
Q psy11701        312 DQPEDYEVEA--GQ-SATFRCNAVSD-PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTEL  387 (745)
Q Consensus       312 ~~p~~~~~~~--g~-~~~l~C~~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~  387 (745)
                      ..|..+.+..  .. .+.|.|..... +...+.+.|...+..... ............+.+.++.....+.|++.|.|..
T Consensus         3 ~~P~~l~~~~~~~~~sv~l~W~~~~~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   81 (368)
T 1fnf_A            3 SPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGN-SLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDD   81 (368)
T ss_dssp             CCCEEEEEEECSSSSCEEEEEECCSCSSCCEEEEEEEETTTCSSC-CEEEEECTTCCEEECCCCCTTSCEEEEEEEEETT
T ss_pred             CCCcceEEEecCCCcEEEEEEeCCCCCCceEEEEEEEECCCCCCc-eeEEEecCCcCEEEECCCCCCCEEEEEEEEEcCC
Confidence            3444455432  22 48888877532 233467777654321110 0111222345678899999999999999999998


Q ss_pred             ceEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEe
Q psy11701        388 DFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEV  467 (745)
Q Consensus       388 g~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i  467 (745)
                      |.+... ...+...+.+|.++.+.. .+.+++.|.|+++.    ++.+.+|.|+|+..... ..+..+.+ ......+.+
T Consensus        82 g~s~~~-~~~~~~~~~~p~~l~~~~-~~~~si~l~W~~p~----~~~~~~Y~v~~~~~~~~-~~~~~~~~-~~~~~~~~i  153 (368)
T 1fnf_A           82 KESVPI-SDTIIPAVPPPTDLRFTN-IGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNE-EDVAELSI-SPSDNAVVL  153 (368)
T ss_dssp             EECCCE-EEEECCCCCCCEEEEEES-CCSSCEEEEEECCT----TCCCSEEEEEEEETTCT-TCCEEEEE-CTTCCEEEE
T ss_pred             CccCce-eeeecCCCcCCceeEEEE-cCCCeEEEEeeCCC----CCCCcEEEEEEEECCCC-CccEEEEc-CCCcceEEe
Confidence            854432 223333445788888876 78999999999863    36688999988765443 34455556 567889999


Q ss_pred             cccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCc
Q psy11701        468 DKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT  547 (745)
Q Consensus       468 ~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~  547 (745)
                      .+|.+++.|.|+|.|.|..|.+.+.. ....   .+|.+|.++.+...+.+++.|+|++|.   +.|.+|.|+|+..+..
T Consensus       154 ~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~~---~~~~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~~~~~  226 (368)
T 1fnf_A          154 TNLLPGTEYVVSVSSVYEQHESTPLR-GRQK---TGLDSPTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHPEHFS  226 (368)
T ss_dssp             CSCCTTCEEEEEEEEEETTEECCCEE-EEEE---CCCCCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECSCCS
T ss_pred             cCCCCCCEEEEEEEEEeCCCCCCCeE-eeec---CCCCCCCccEEEEccCCEEEEEEeCCC---CCcCEEEEEEecCCCC
Confidence            99999999999999999999876543 2222   346677899999989999999999874   5899999999876543


Q ss_pred             ccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCcceeEEEeecCc
Q psy11701        548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPE  627 (745)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~~~v~W~~~~~  627 (745)
                      .......    + .....++.+.+|.|++.|.|+|.|.|..|.|+++..........+..+.+....++++.|+|+++..
T Consensus       227 ~~~~~~~----~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~~p~~  301 (368)
T 1fnf_A          227 GRPREDR----V-PHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAV  301 (368)
T ss_dssp             SCCEEEE----E-ETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEEEEEECCCCSCEEEEEEEEETTEEEEEEECCSS
T ss_pred             CCccEEE----e-CCCcCEEEECCCCCCCEEEEEEEEEeCCccCCcccccccCCCCCCCeeEEEecCCCEEEEEeeCCCC
Confidence            2211111    2 4566899999999999999999999999999886543222222223333334467899999987654


Q ss_pred             cccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCe
Q psy11701        628 IEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSI  691 (745)
Q Consensus       628 ~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~  691 (745)
                           .+.+|.|.|+..++..... ..........+++.||.+++.|.|+|.|....|.++.+.
T Consensus       302 -----~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~s~  359 (368)
T 1fnf_A          302 -----TVRYYRITYGETGGNSPVQ-EFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASS  359 (368)
T ss_dssp             -----CCSEEEEEEEETTCCSCCE-EEEEETTCCEEEECSCCTTCCEEEEEEEECCCSSSCCBC
T ss_pred             -----ccceEEEEEEECCCCCccE-EEEcCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCcccC
Confidence                 3689999999765433222 222344568899999999999999999999888876554

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.96  E-value=1.2e-28  Score=249.39  Aligned_cols=260  Identities=23%  Similarity=0.286  Sum_probs=201.1

Q ss_pred             ceeEeeCCCeEEEEEEEeec---------CCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCE-EEEEEEEeC
Q psy11701        133 EFINAAEEETVTFECKASGL---------PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTG-NYGCNATNS  202 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~~---------p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~~~  202 (745)
                      ....+.+|+++.|.|.+.+.         |.+.++|+|++..+....   +. ...+.|.|.+++.+|+| .|+|.|.|.
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~---~~-~~~~~L~i~~v~~~D~Gs~Y~C~a~n~  112 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLN---RR-VKNGDLWIANYTSNDSHRRYLCTVTTK  112 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECS---TT-EETTEEEESSCCGGGGGCCEEEEEECT
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccC---ce-eecceEEEcCCChHhCCCcEEEEEEeC
Confidence            34568899999999999874         557999999998766422   12 45789999999999999 999999999


Q ss_pred             CceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecC-CCeEEEeeCCEEcc--CceEEEeecCcEEEcccCC
Q psy11701        203 LGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAP-KPEVNWIHNQKELT--GGRYTILETGDLKITDVAF  279 (745)
Q Consensus       203 ~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~--~~~~~~~~~~~l~i~~~~~  279 (745)
                      .|.......+.+...+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+.  ..++... .+.|.|.++..
T Consensus       113 ~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~~~L~I~~v~~  191 (329)
T 3oq3_B          113 NGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-GQNLIIHNPEL  191 (329)
T ss_dssp             TSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-TTEEEECSCCG
T ss_pred             CCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-CCEEEEeecCh
Confidence            87765554445555566655444444466799999999999999 89999999999884  3444443 68899999999


Q ss_pred             CCCEEEEEEEEeC--CceE----EEEEEEEEeecc----eeecCCCcEEEecCCeEEEEEEEEecC--CCCcEEEEeeCC
Q psy11701        280 ADSGEYTCFARNK--LGTA----QGSGSLTVKEHT----HITDQPEDYEVEAGQSATFRCNAVSDP--SLKLSIVWLRGS  347 (745)
Q Consensus       280 ~d~G~Y~C~~~n~--~g~~----~~~~~l~v~~~p----~~~~~p~~~~~~~g~~~~l~C~~~~~~--~~~~~i~W~~~~  347 (745)
                      +|+|.|+|.|.|.  .|..    ...+.|.|..+|    .+. .|....+..|+.+.|.|.+.+.|  .+.+.+.|++++
T Consensus       192 ~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g  270 (329)
T 3oq3_B          192 EDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPS  270 (329)
T ss_dssp             GGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTT
T ss_pred             hhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECC
Confidence            9999999999987  5442    334778887766    333 66678889999999999999998  332489999998


Q ss_pred             eeccCCCCCeEEE---c---CCeEEEEecCCCCCCE-EEEEEEEeCCceEEEEEEEEE
Q psy11701        348 EPIDFESEPRFVQ---S---NDYSLTVTKSSELDSG-QYTCRAQTELDFIEAQATLTV  398 (745)
Q Consensus       348 ~~~~~~~~~~~~~---~---~~~~l~i~~~~~~~~g-~y~c~a~n~~g~~~~~~~l~v  398 (745)
                      ..+..........   .   ....|.|..+...|.| .|+|.|.|..|.....+.|.+
T Consensus       271 ~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          271 GWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             SCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             eeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            8743222211111   0   3467999999999999 999999999999888887765

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.96  E-value=4e-28  Score=241.29  Aligned_cols=268  Identities=19%  Similarity=0.272  Sum_probs=205.0

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .+|.+...+....+.+|+++.|.|.+.+    .+.|++++.....    .........|.|.+++.+|+|.|+|.+.+..
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   74 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWT----LDPESPGSTLTTRNATFKNTGTYRCTELEDP   74 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSE----ECCCSSCCEEEESSCCGGGCEEEEEECCC--
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEE----EeccCCccEEEEeeeccccCEEEEEEEeccC
Confidence            3566777788889999999999999987    5999987643221    1122345789999999999999999999888


Q ss_pred             ceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCe-EEEee-CCEEcc-CceEEEeecCcEEEcccCCC
Q psy11701        204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPE-VNWIH-NQKELT-GGRYTILETGDLKITDVAFA  280 (745)
Q Consensus       204 g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~-i~W~~-~~~~~~-~~~~~~~~~~~l~i~~~~~~  280 (745)
                      +.....+.|.|...+..+...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+. ..++.....+.|.|.++..+
T Consensus        75 ~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  154 (289)
T 3ejj_X           75 MAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL  154 (289)
T ss_dssp             ---CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGG
T ss_pred             CcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccc
Confidence            8877888888886444467777888899999999999998876664 99986 555553 44566666778999999999


Q ss_pred             CCEEEEEEEEe-CCceEEEEEEEEEe----ecceeecCCCcEEEecCCeEEEEEEEEe-cCCCCcEEEEeeCCeeccCCC
Q psy11701        281 DSGEYTCFARN-KLGTAQGSGSLTVK----EHTHITDQPEDYEVEAGQSATFRCNAVS-DPSLKLSIVWLRGSEPIDFES  354 (745)
Q Consensus       281 d~G~Y~C~~~n-~~g~~~~~~~l~v~----~~p~~~~~p~~~~~~~g~~~~l~C~~~~-~~~~~~~i~W~~~~~~~~~~~  354 (745)
                      |+|.|+|.+.+ ..+..+..+.|.|.    .+|.+...+....+..|+.+.|.|.+.+ .|.  +.+.|++++..+....
T Consensus       155 d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~i~W~~~~~~~~~~~  232 (289)
T 3ejj_X          155 DSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG--FNVILKRGDTKLEIPL  232 (289)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSC--CEEEEEETTEECCCCE
T ss_pred             cCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCc--eEEEEEECCEEeeccC
Confidence            99999999994 44455677888887    5677777777777789999999999998 443  7999999998775321


Q ss_pred             CCeE---EEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEecc
Q psy11701        355 EPRF---VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP  401 (745)
Q Consensus       355 ~~~~---~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~p  401 (745)
                      ...+   .......|.|..+...|.|.|+|.|.|..|....++.|.+..+
T Consensus       233 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~  282 (289)
T 3ejj_X          233 NSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES  282 (289)
T ss_dssp             EEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC--
T ss_pred             CcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEec
Confidence            1100   0112457999999999999999999999999999988877533

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.96  E-value=2e-29  Score=256.47  Aligned_cols=268  Identities=26%  Similarity=0.440  Sum_probs=138.6

Q ss_pred             cCceeEeeCCCeEEEEEEEeec-CCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        131 EPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      .+....+.+|+++.|.|.+.+. |.+.+.|+|+|..+...   .+....++.|.|.+++.+|+|.|+|.+.|. |.....
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~   89 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS---ERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCH   89 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCc---ccEEeccceEEEeecccccCEEEEEEEEeC-CeEEEE
Confidence            3777889999999999999886 57899999999988632   344445679999999999999999999998 766666


Q ss_pred             EEEEEeec---------------------CCeeeeC----CCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceE
Q psy11701        210 VYVNVLAH---------------------APEITEA----PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY  264 (745)
Q Consensus       210 ~~l~v~~~---------------------~p~~~~~----~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~  264 (745)
                      +.|.|...                     +|.+...    +....+.+|+.++|.|.+.+.|.+.+.|++++..+.....
T Consensus        90 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~  169 (334)
T 1ry7_B           90 FSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR  169 (334)
T ss_dssp             -----------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSS
T ss_pred             EEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccc
Confidence            77777642                     2333221    1235688999999999999999999999999987753311


Q ss_pred             -----EEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeec----ceee-cCCCcEEEecCCeEEEEEEEEec
Q psy11701        265 -----TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH----THIT-DQPEDYEVEAGQSATFRCNAVSD  334 (745)
Q Consensus       265 -----~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~----p~~~-~~p~~~~~~~g~~~~l~C~~~~~  334 (745)
                           .......|.|.++...|+|.|+|.+.|..|.....+.|.|...    |.+. ..|....+..|+.+.|.|.+.+.
T Consensus       170 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~  249 (334)
T 1ry7_B          170 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSD  249 (334)
T ss_dssp             TTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCS
T ss_pred             ccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecC
Confidence                 1122347999999999999999999999999888888888763    2222 23566788999999999999987


Q ss_pred             CCCCcEEEEee----CCeeccCCCCCeEEEc----------CCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEec
Q psy11701        335 PSLKLSIVWLR----GSEPIDFESEPRFVQS----------NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV  400 (745)
Q Consensus       335 ~~~~~~i~W~~----~~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~  400 (745)
                      |.  +.+.|++    ++..+...........          ....|.|..+...|.|.|+|.|.|..|.....+.|.|..
T Consensus       250 p~--p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  327 (334)
T 1ry7_B          250 AQ--PHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLP  327 (334)
T ss_dssp             SC--EEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEEC
T ss_pred             CC--CeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEE
Confidence            76  6899999    5555543222111111          113799999999999999999999999999999999986


Q ss_pred             cCCC
Q psy11701        401 PLEA  404 (745)
Q Consensus       401 pp~~  404 (745)
                      .+.+
T Consensus       328 ~~~~  331 (334)
T 1ry7_B          328 AEEE  331 (334)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            5543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.96  E-value=5.1e-28  Score=240.41  Aligned_cols=259  Identities=17%  Similarity=0.226  Sum_probs=183.2

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccC---CcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY---GKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      .+...+..+.+|++++|.|.+.|.    +.|+|++..+.  .+......   .++|.|.+++.+|+|.|+|.|.+..|..
T Consensus         4 ~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   77 (289)
T 3mjg_X            4 TPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLE   77 (289)
T ss_dssp             CSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC-----
T ss_pred             cCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCC
Confidence            345567789999999999999864    99999998874  23333232   2589999999999999999999877653


Q ss_pred             E--EEEEEEEEEecCe--EEecCc--eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccC
Q psy11701        114 K--SYSIDLSVLAAPY--FTVEPE--FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL  187 (745)
Q Consensus       114 ~--~~~~~l~V~~~p~--~~~~~~--~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v  187 (745)
                      .  +..+.|.|..+..  +...+.  ...+.+|+++.|.|.+. .|.+.++|++++......   ... .....+.    
T Consensus        78 ~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~---~~~-~~~~~~~----  148 (289)
T 3mjg_X           78 TDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP---VPY-DHQRGFS----  148 (289)
T ss_dssp             -CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC---CCE-ETTTEEE----
T ss_pred             cCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc---eee-cCCcCee----
Confidence            3  2445555553332  212222  16789999999999999 578899999875322211   011 1112222    


Q ss_pred             CCCCCEEEEEEEEeCCceEEEE-EEEEEee-cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCc---
Q psy11701        188 RKSDTGNYGCNATNSLGYVYKD-VYVNVLA-HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---  262 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~-~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---  262 (745)
                      ...|+|.|+|.|.|..+..... ..|.|.. .+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++......   
T Consensus       149 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~  228 (289)
T 3mjg_X          149 GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEP  228 (289)
T ss_dssp             ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCC
T ss_pred             eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccc
Confidence            3579999999999877665433 5566654 4677777777778999999999999999999999999876543211   


Q ss_pred             eEEE------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeeccee
Q psy11701        263 RYTI------LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI  310 (745)
Q Consensus       263 ~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~  310 (745)
                      ....      ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|...+..
T Consensus       229 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  282 (289)
T 3mjg_X          229 VTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG  282 (289)
T ss_dssp             EEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC--
T ss_pred             cccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecC
Confidence            1111      12357999999999999999999999999999999999876643

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.96  E-value=9.6e-29  Score=248.83  Aligned_cols=267  Identities=15%  Similarity=0.181  Sum_probs=181.7

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCC-
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV-  110 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-  110 (745)
                      +|+.+...|. ..+.+|++++|.|.+.+. .+.+.|+|+|..+...  ......+..|.|.+++.+|+|.|+|.|.+.. 
T Consensus        23 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~   98 (316)
T 3vh8_G           23 DKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI--FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHS   98 (316)
T ss_dssp             -CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH--HHHCCBSSCEEECSCCGGGCEEEEEEEBCSSS
T ss_pred             CCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCcccee--ecCCcceEEEEECCCCcccCeEEEEEEEcCCC
Confidence            3455556666 678999999999999877 6799999999876532  1112345689999999999999999998632 


Q ss_pred             ---eeeEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce--eecCceE
Q psy11701        111 ---GEAKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR--KVGPNRI  182 (745)
Q Consensus       111 ---g~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~~L  182 (745)
                         ....+..+.|.|..   +|.+...+... +.+|++++|.|.+.+ +.+.+.|+|+|..+.........  ......|
T Consensus        99 ~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L  176 (316)
T 3vh8_G           99 PTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANF  176 (316)
T ss_dssp             SSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEETTEEEEEE
T ss_pred             CcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeecCCCceEEE
Confidence               22233556777754   45666666654 889999999999954 56799999999876422111111  1234689


Q ss_pred             EEccCCCCCCEEEEEEEEeCCceE-----EEEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeC
Q psy11701        183 TIENLRKSDTGNYGCNATNSLGYV-----YKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN  255 (745)
Q Consensus       183 ~i~~v~~~d~G~Y~C~~~~~~g~~-----~~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~  255 (745)
                      .|.+++.+|+|.|+|.|.|..|..     ...+.|.|..  .+|.+...+.. .+.+|+.++|.|.+. .+.+.+.|+++
T Consensus       177 ~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~W~k~  254 (316)
T 3vh8_G          177 SIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP-KVQAGESVTLSCSSR-SSYDMYHLSRE  254 (316)
T ss_dssp             EECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCS-CCCTTSCCEEEEEES-SCCSEEEEEET
T ss_pred             EECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCC-eecCCCcEEEEEECC-CCCcEEEEEEC
Confidence            999999999999999999987631     3335566643  35666655543 568899999999997 46789999999


Q ss_pred             CEEccCceEE-Ee----ecCcEEEcccCCCCCEEEEEEEEeCCce-----EEEEEEEEEeecc
Q psy11701        256 QKELTGGRYT-IL----ETGDLKITDVAFADSGEYTCFARNKLGT-----AQGSGSLTVKEHT  308 (745)
Q Consensus       256 ~~~~~~~~~~-~~----~~~~l~i~~~~~~d~G~Y~C~~~n~~g~-----~~~~~~l~v~~~p  308 (745)
                      +..+...... ..    ....|.|.+++  |+|.|+|.+.|..+.     .+..+.|.|..+|
T Consensus       255 g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          255 GGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             TSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             CCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence            8766432111 11    12469999998  999999999997653     2445556665443

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.96  E-value=3.1e-27  Score=237.54  Aligned_cols=267  Identities=18%  Similarity=0.229  Sum_probs=199.1

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCC-----eEEEEeCCEeccCC----------CCCCce---------eecCceEE
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEP-----EIHWVHNGKPISQA----------PPNPRR---------KVGPNRIT  183 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~-----~v~W~~~g~~~~~~----------~~~~~~---------~~~~~~L~  183 (745)
                      +...|....+..|++++|.|.+.+.+.+     .++|+|+|......          ....+.         ...+.+|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            3456778888999999999999886554     49999987643210          001111         11345799


Q ss_pred             EccCCCCCCEEEEEEEE-eCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEe-ecCCCeEEEeeCCEEccC
Q psy11701        184 IENLRKSDTGNYGCNAT-NSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKELTG  261 (745)
Q Consensus       184 i~~v~~~d~G~Y~C~~~-~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~  261 (745)
                      |.+++.+|+|.|+|.+. +..+.....+.|.+.. +|.+...+....+..|+.+.|.|.+. +.|.+.+.|++++..+..
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~-~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~  161 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA-KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPN  161 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBB-CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeecc-CCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccc
Confidence            99999999999999986 4456666667777764 66666666666777889999999865 678899999999876643


Q ss_pred             ceEEE-eec------CcEEEcccCCCCCEEEEEEEEeCCce--EEEEEEEEEeecceeec-CCCcEEEecCCeEEEEEEE
Q psy11701        262 GRYTI-LET------GDLKITDVAFADSGEYTCFARNKLGT--AQGSGSLTVKEHTHITD-QPEDYEVEAGQSATFRCNA  331 (745)
Q Consensus       262 ~~~~~-~~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~--~~~~~~l~v~~~p~~~~-~p~~~~~~~g~~~~l~C~~  331 (745)
                      ..... ..+      ..|.|.....+|+|.|+|.|.|..+.  ....+.|.|..+|.+.. .+....+..|+.+.|.|.+
T Consensus       162 ~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~  241 (313)
T 4fqp_A          162 TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDA  241 (313)
T ss_dssp             EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEE
T ss_pred             cceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEe
Confidence            32221 111      24888899999999999999997655  45566777777777643 3344556778999999999


Q ss_pred             EecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEecc
Q psy11701        332 VSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP  401 (745)
Q Consensus       332 ~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~p  401 (745)
                      .|.|.+ ..+.|++++..+..  . .  ...+..|.|..+...|.|.|+|.|.|..|.....+.|.|..+
T Consensus       242 ~g~P~p-~~v~W~~~~~~l~~--~-~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  305 (313)
T 4fqp_A          242 RSNPEP-TGYNWSTTMGPLPP--F-A--VAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEG  305 (313)
T ss_dssp             EEESCC-CEEEEEETTBSCCT--T-E--EEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             cCCCCC-cEEEEEECCEECCC--c-e--EEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeC
Confidence            998863 47999999987752  1 1  223458999999999999999999999999999999988754

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.96  E-value=4e-28  Score=248.42  Aligned_cols=269  Identities=17%  Similarity=0.224  Sum_probs=173.7

Q ss_pred             CceeEeeCCCeEEEEEEEeecCC-----------CeEEEEeCCEec------cCCCCCCceeecCceEEEccCCCCCCEE
Q psy11701        132 PEFINAAEEETVTFECKASGLPE-----------PEIHWVHNGKPI------SQAPPNPRRKVGPNRITIENLRKSDTGN  194 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~-----------~~v~W~~~g~~~------~~~~~~~~~~~~~~~L~i~~v~~~d~G~  194 (745)
                      .....+.+|+++.|.|.+.+.|.           +.+.|+|++...      .......+.....+.|.|.+++.+|+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            45667899999999999987554           899999988421      1011223445567899999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCCeee---eCCCceEEecCceEEEEEEE-----eecCCCeEEEeeCCEEccCceEEE
Q psy11701        195 YGCNATNSLGYVYKDVYVNVLAHAPEIT---EAPKDEYTVDGKTVVLTCRV-----FGAPKPEVNWIHNQKELTGGRYTI  266 (745)
Q Consensus       195 Y~C~~~~~~g~~~~~~~l~v~~~~p~~~---~~~~~~~v~~g~~~~l~C~~-----~~~p~~~i~W~~~~~~~~~~~~~~  266 (745)
                      |+|.+.|..+.....+.|.|...+..+.   ..+....+.+|+.+.|.|.+     .+.|.+.+.|++++..+.......
T Consensus        94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~  173 (349)
T 4dep_C           94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI  173 (349)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEE
T ss_pred             EEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcccee
Confidence            9999999999888888898886333222   12334567889999999985     677889999999999886533233


Q ss_pred             eecCcEEEcccCCCCCEEEEEEEEeCC-ceE---EEEEEEEEee------cceeecCCCcE--EEecCCeEEEEEEEEec
Q psy11701        267 LETGDLKITDVAFADSGEYTCFARNKL-GTA---QGSGSLTVKE------HTHITDQPEDY--EVEAGQSATFRCNAVSD  334 (745)
Q Consensus       267 ~~~~~l~i~~~~~~d~G~Y~C~~~n~~-g~~---~~~~~l~v~~------~p~~~~~p~~~--~~~~g~~~~l~C~~~~~  334 (745)
                      .....|.|.+++.+|+|.|+|.|.|.. |..   ...+.|.|..      +|.+...+...  .+..|+.+.|.|.+.+.
T Consensus       174 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~  253 (349)
T 4dep_C          174 PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFS  253 (349)
T ss_dssp             EETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEEC
T ss_pred             ecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEc
Confidence            344579999999999999999999976 443   5667777765      45444444322  67889999999999964


Q ss_pred             C--CCCcEEEEeeCCeeccCC-CCCeE----E------EcCCeEEEEecCCCCCC-EEEEEEEEeCCceEEEEEEEEEec
Q psy11701        335 P--SLKLSIVWLRGSEPIDFE-SEPRF----V------QSNDYSLTVTKSSELDS-GQYTCRAQTELDFIEAQATLTVQV  400 (745)
Q Consensus       335 ~--~~~~~i~W~~~~~~~~~~-~~~~~----~------~~~~~~l~i~~~~~~~~-g~y~c~a~n~~g~~~~~~~l~v~~  400 (745)
                      +  .+.+.+.|++++..+... .....    .      ......|.|..+...|. |.|+|.|.|..|.....+.|.+..
T Consensus       254 ~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          254 FLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             CCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred             cCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence            1  124799999998876531 11110    0      00123489999999999 999999999999999888888864

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.96  E-value=5.5e-28  Score=242.25  Aligned_cols=280  Identities=13%  Similarity=0.091  Sum_probs=200.7

Q ss_pred             CcEEEecCCeEEEEEEEEec--CC-CCcEEEEeeCCeeccCCCCCeEEEcCC--eEEEEecCCCCCCEEEEEEEEeCCce
Q psy11701        315 EDYEVEAGQSATFRCNAVSD--PS-LKLSIVWLRGSEPIDFESEPRFVQSND--YSLTVTKSSELDSGQYTCRAQTELDF  389 (745)
Q Consensus       315 ~~~~~~~g~~~~l~C~~~~~--~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~~~g~y~c~a~n~~g~  389 (745)
                      ....+..|++++|.|.+.+.  +. +.+.+.|++++..+... .........  +.|.|.++...|.|.|.|.+.+..+.
T Consensus         8 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B            8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGG-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             SCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTC-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred             CCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCcc-ceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence            45667899999999999986  21 23779999999877421 111111222  67999999999999999998765555


Q ss_pred             EEEEEEEEEeccCCCCCCceeEEee-cCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCC----CceeEEEEccCceeE
Q psy11701        390 IEAQATLTVQVPLEAPSNFTLIQVI-DAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGE----GSIRELIVNKGESTT  464 (745)
Q Consensus       390 ~~~~~~l~v~~pp~~P~~~~~~~~~-~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~----~~~~~~~~~~~~~~~  464 (745)
                      ....+.|.+..||.+|.++.+.. . ..+++++.|+++..  .+ ....|.|+|+......    ..+..... ......
T Consensus        87 ~~~~~~l~v~~~P~~P~~l~c~~-~~~~~~~~~~W~~~~~--~~-~~~~Y~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~  161 (313)
T 2d9q_B           87 ILDQVELRAGYPPAIPHNLSCLM-NLTTSSLICQWEPGPE--TH-LPTSFTLKSFKSRGNCQTQGDSILDCVP-KDGQSH  161 (313)
T ss_dssp             EEEEEEEEECCCCCCCEEEEEEE-ETTTTEEEEEEECCSC--CS-SCCEEEEEEEECCTTSCSCCCCEEEECC-CTTCSE
T ss_pred             eEEEEEEccCCCCCCCccceeeE-CCCCccEEEEecCCCC--CC-CceeEEEEEEecCCCcccCCcccccCCC-CCCCcE
Confidence            55678888889999999999876 5 36899999998643  22 2457999988654321    11222211 223345


Q ss_pred             EEe--cccccCcceeEEEEEecCCCCCCCCcceEEeCCC-CCCCCCCceeEEEc------CCceEEEEeeCCCCCCCcee
Q psy11701        465 TEV--DKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE-GVPGTVQSLEAIPL------GSSAFYLKWVKPEQPNGVLM  535 (745)
Q Consensus       465 ~~i--~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~-~~P~~p~~~~~~~~------~~~~i~l~W~~p~~~~g~i~  535 (745)
                      +++  .+|.+++.|.|+|.|.|..|.+. +..+.+.+.. .+|++|.++.+...      ..+++.|+|++|...++.++
T Consensus       162 ~~~~~~~L~~~~~Y~f~V~A~N~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l  240 (313)
T 2d9q_B          162 CSIPRKHLLLYQNMGIWVQAENALGTSM-SPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQ  240 (313)
T ss_dssp             EEEEGGGCCSSSCEEEEEEEEETTEEEE-CCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGGGTTSCE
T ss_pred             EEECccccccceeEEEEEEEECCCCCcc-CccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCCCCceeE
Confidence            555  45999999999999999999864 3345555443 46888988887765      46899999999876555568


Q ss_pred             eEEEEEE-EcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCC
Q psy11701        536 GYKIKYQ-SVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPD  606 (745)
Q Consensus       536 ~Y~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~  606 (745)
                      +|.|+|+ ..+...|....     ........+.|.+|.|++.|.|+|+|.|..|.|.+|+++..+...+..
T Consensus       241 ~Y~v~y~~~~~~~~w~~~~-----~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~  307 (313)
T 2d9q_B          241 KCELRHKPQRGEASWALVG-----PLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTE  307 (313)
T ss_dssp             EEEEEEEESSSCCCCEEEE-----EECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC
T ss_pred             EEEEEEccCCCCCCcEEcc-----cccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCc
Confidence            9999999 55444443221     113345789999999999999999999999999988777655555554

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.96  E-value=5.8e-29  Score=253.49  Aligned_cols=276  Identities=17%  Similarity=0.247  Sum_probs=213.3

Q ss_pred             EEEecCeEEecCceeEeeCCCeEEEEEEEe-------ecCCCeEEEEeCCEeccCCCC-CCceeecCceEEEccCCCCCC
Q psy11701        121 SVLAAPYFTVEPEFINAAEEETVTFECKAS-------GLPEPEIHWVHNGKPISQAPP-NPRRKVGPNRITIENLRKSDT  192 (745)
Q Consensus       121 ~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~-------~~p~~~v~W~~~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~  192 (745)
                      .....|.+...|....+.+|+++.|.|.+.       +.|.+.+.|+|+|..+..... ..+....++.|.|.+++.+|+
T Consensus        14 ~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~   93 (339)
T 3o4o_C           14 AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDS   93 (339)
T ss_dssp             ----CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCC
T ss_pred             cchhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccC
Confidence            445678899999999999999999999998       888899999999987532222 445556778999999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEeecCCee-eeCCCceEEecCceEEEEEE-----EeecCCCeEEEeeCCEEccC--ceE
Q psy11701        193 GNYGCNATNSLGYVYKDVYVNVLAHAPEI-TEAPKDEYTVDGKTVVLTCR-----VFGAPKPEVNWIHNQKELTG--GRY  264 (745)
Q Consensus       193 G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~-~~~~~~~~v~~g~~~~l~C~-----~~~~p~~~i~W~~~~~~~~~--~~~  264 (745)
                      |.|+|.+.|..|.....+.|.|...++.. ........+.+|+.+.|.|.     +.+.|.+.+.|++++..+..  .++
T Consensus        94 G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~  173 (339)
T 3o4o_C           94 GTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF  173 (339)
T ss_dssp             EEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSE
T ss_pred             EEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCcee
Confidence            99999999999988888888888644322 12222346789999999999     78888899999999988754  345


Q ss_pred             EEeec-CcEEEcccCCCCCEEEEEEEEeCCc----eEEEEEEEEEee-----cceeecCCCcEEEecCCeEEEEEEE---
Q psy11701        265 TILET-GDLKITDVAFADSGEYTCFARNKLG----TAQGSGSLTVKE-----HTHITDQPEDYEVEAGQSATFRCNA---  331 (745)
Q Consensus       265 ~~~~~-~~l~i~~~~~~d~G~Y~C~~~n~~g----~~~~~~~l~v~~-----~p~~~~~p~~~~~~~g~~~~l~C~~---  331 (745)
                      ..... +.|.|.++...|+|.|+|.|.|..|    .....+.|.|..     +|.+...+....+..|+.+.|.|.+   
T Consensus       174 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~  253 (339)
T 3o4o_C          174 LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLG  253 (339)
T ss_dssp             EECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEES
T ss_pred             EEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECC
Confidence            44433 4799999999999999999999887    456777888864     4456666666778899999999999   


Q ss_pred             EecCCCCcEEEEeeCCeeccCC-------CCCeEEEcCCe------EEEEecCCCCCC-EEEEEEEEeCCceEEEEEEEE
Q psy11701        332 VSDPSLKLSIVWLRGSEPIDFE-------SEPRFVQSNDY------SLTVTKSSELDS-GQYTCRAQTELDFIEAQATLT  397 (745)
Q Consensus       332 ~~~~~~~~~i~W~~~~~~~~~~-------~~~~~~~~~~~------~l~i~~~~~~~~-g~y~c~a~n~~g~~~~~~~l~  397 (745)
                      .+.|. .+.+.|++++..+...       ...++....++      .|.|..+...|. |.|+|.|.|..|.....+.+.
T Consensus       254 ~g~P~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~  332 (339)
T 3o4o_C          254 TGTPL-TTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK  332 (339)
T ss_dssp             SSCCS-SCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCC
T ss_pred             CCCCC-CceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhh
Confidence            67763 3789999988765421       11222222232      699999999997 999999999999887665544

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.96  E-value=7.8e-27  Score=228.31  Aligned_cols=241  Identities=21%  Similarity=0.293  Sum_probs=194.0

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .|.|...|....+.+|+.+.|.|.+.+.|.+ .++|+|+|..+...         ...|.|.+++.+|+|.|+|.+.|..
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~---------~~~l~i~~~~~~d~G~Y~C~~~~~~   71 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS---------TPSYRITSASVNDSGEYRCQRGLSG   71 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC---------SSEEEESSCCGGGCEEEEEEESSSC
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc---------CCeEEEecCCcccCeEEEEEEecCC
Confidence            4778888999899999999999999988887 99999999988632         5689999999999999999998765


Q ss_pred             ceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEE-eecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCCC
Q psy11701        204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADS  282 (745)
Q Consensus       204 g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  282 (745)
                      +..  .+.|.|.. ++ +...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...    ...+.|.|.+++..|+
T Consensus        72 ~s~--~~~l~v~~-~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~----~~~~~l~i~~~~~~d~  143 (262)
T 3rjd_A           72 RSD--PIQLEIHR-GW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF----HWNSNLTILKTNISHN  143 (262)
T ss_dssp             CCC--CEEEEEEC-SS-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE----EECCCEEESSCCGGGC
T ss_pred             ccc--cEEEEEec-cc-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc----CCCCeEEEEECChhhC
Confidence            543  45566653 33 3444556678899999999999 66677899999999877432    2356899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEee---cceeecCCCcEEEecCCeEEEEEEEEecCC-CC--cEEEEeeCCeeccCCCCC
Q psy11701        283 GEYTCFARNKLGTAQGSGSLTVKE---HTHITDQPEDYEVEAGQSATFRCNAVSDPS-LK--LSIVWLRGSEPIDFESEP  356 (745)
Q Consensus       283 G~Y~C~~~n~~g~~~~~~~l~v~~---~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~-~~--~~i~W~~~~~~~~~~~~~  356 (745)
                      |.|+|.+.|..+..+..+.|.|..   +|.+...+ ...+..|+.+.|.|.+.+.|. +.  ..+.|++++..+..    
T Consensus       144 G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~----  218 (262)
T 3rjd_A          144 GTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG----  218 (262)
T ss_dssp             EEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEE----
T ss_pred             EEEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecc----
Confidence            999999999998888888888875   34444444 455788999999999998864 22  45789999887642    


Q ss_pred             eEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceE
Q psy11701        357 RFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFI  390 (745)
Q Consensus       357 ~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  390 (745)
                         ......|.|..+...|.|.|+|.|.|..|..
T Consensus       219 ---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          219 ---RNTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             ---EESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             ---cCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence               2345689999999999999999999999964

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.96  E-value=1.1e-28  Score=280.53  Aligned_cols=295  Identities=18%  Similarity=0.157  Sum_probs=213.5

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccC------------CCCceeEEEEcc---------Cc
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKD------------GEGSIRELIVNK---------GE  461 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~------------~~~~~~~~~~~~---------~~  461 (745)
                      ..|.++++.. .+.+++.|+|+++.. ..++++.+|.|+|+....            +...|....+..         ..
T Consensus       470 ~~~~~l~v~~-~s~~sv~LsW~~p~~-~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~  547 (897)
T 2dtg_E          470 NELLKFSYIR-TSFDKILLRWEPYWP-PDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQN  547 (897)
T ss_dssp             CCBCCCSEEE-ECSSCEEEECCCCCS-SSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSS
T ss_pred             cceeEEEEEE-EecCeEEEEecCCCC-CCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCcccccccccc
Confidence            3456788887 899999999998643 344589999998876421            111222111100         02


Q ss_pred             eeEEEecccccCcceeEEEEE-ecCCCC----CCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceee
Q psy11701        462 STTTEVDKFVPASKNFARVLA-FNGAYN----GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMG  536 (745)
Q Consensus       462 ~~~~~i~~L~~~~~Y~~~V~a-~n~~G~----g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~  536 (745)
                      ...+++.+|+|++.|.|+|.| .|..|.    |.+|..+.++|.+++|++|.++.+...+.++|.|+|++|.+.+|.|++
T Consensus       548 ~~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG~I~~  627 (897)
T 2dtg_E          548 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITH  627 (897)
T ss_dssp             CCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEECSSSCEEEEEECCCCSSSSCSE
T ss_pred             ccceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEeCCCCEEEEEEeCCCCCCCCeeE
Confidence            578999999999999999999 999998    788888999999999999999999999999999999999888999999


Q ss_pred             EEEEEEEcCCcccC--------------------------------------------------------------Cccc
Q psy11701        537 YKIKYQSVKGTKVG--------------------------------------------------------------PLLE  554 (745)
Q Consensus       537 Y~v~~~~~~~~~~~--------------------------------------------------------------~~~~  554 (745)
                      |.|+|+........                                                              .|..
T Consensus       628 Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W~~  707 (897)
T 2dtg_E          628 YLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFED  707 (897)
T ss_dssp             EECCEEEECCCCSCTTCSSSCSCCCCCC----------------------------------------------------
T ss_pred             EEEEEEECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhhhhhhhheeeeEEE
Confidence            99999875431000                                                              0000


Q ss_pred             ----cc---------cc----------------ccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC---cceeeeccc
Q psy11701        555 ----RL---------PY----------------ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE---SKYLFYVPF  602 (745)
Q Consensus       555 ----~~---------~~----------------~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~---S~~~~~~~~  602 (745)
                          ..         ..                ...+..+++++.+|.|++.|+|+|.|.|..|.|++   +..+...+.
T Consensus       708 ~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~T~  787 (897)
T 2dtg_E          708 YLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTM  787 (897)
T ss_dssp             ----------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECC
T ss_pred             ccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEecc
Confidence                00         00                00124478999999999999999999999998775   333322221


Q ss_pred             ------CCCCCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEE
Q psy11701        603 ------KNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEI  676 (745)
Q Consensus       603 ------~~~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i  676 (745)
                            ..+..+.+....+++|.|+|++|.  ..+|.|.+|.|.|+..+.  .+....+.                    
T Consensus       788 ~~~~~p~~P~~l~~~~~~~~sv~LsW~~P~--~~nG~I~~Y~V~y~~~~~--~~~~~~~~--------------------  843 (897)
T 2dtg_E          788 PEAKADDIVGPVTHEIFENNVVHLMWQEPK--EPNGLIVLYEVSYRRYGD--EELHLCDT--------------------  843 (897)
T ss_dssp             CCCCCCCCCCCCCCCSSSSSCCCCCCCCCC--SCSSCEEEECCCCBSSSB--CCCCCCCC--------------------
T ss_pred             CccCCCCCCcceEEEeCCCCEEEEEECCCC--CCCCCEEEEEEEEEECCC--cceEEEEe--------------------
Confidence                  112233334456789999998764  478899999999986532  11000000                    


Q ss_pred             EEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCCCC
Q psy11701        677 KVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGG  742 (745)
Q Consensus       677 ~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~~~  742 (745)
                                        .......+.+.|.+|.|+ .|.|+|+|.|.+|.|++|+++.|+|++.+
T Consensus       844 ------------------~~~~~~~~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~~v~~~T~~~p  890 (897)
T 2dtg_E          844 ------------------RKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYVTDYL  890 (897)
T ss_dssp             ------------------SSSCCCTTCCCCCSCCSS-EECCCCCEEETTBCCCCCCCCEECCCCCC
T ss_pred             ------------------eeeecccCcEEECCCCCC-cEEEEEEEEeCCcccCCCCCEEEEeCCCC
Confidence                              000235677889999999 69999999999999999999999997764

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.96  E-value=1.9e-26  Score=231.17  Aligned_cols=251  Identities=20%  Similarity=0.243  Sum_probs=189.1

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEec---cCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQG---NYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      |+.+...|.+..+.+|++++|.|.+.|.|.+.+.|+|++..+... .++...   .....|.|.+++.+|+|.|+|.|.+
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n   83 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN   83 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEc
Confidence            566778889999999999999999999999999999999998754 344432   2224899999999999999999999


Q ss_pred             CCeeeEEEEEEEEEEecCeEEec-----CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-ecCceE
Q psy11701        109 GVGEAKSYSIDLSVLAAPYFTVE-----PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRI  182 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~~p~~~~~-----~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L  182 (745)
                      ..|... ..+.|.|..+|.+...     +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......... .....|
T Consensus        84 ~~g~~~-~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l  162 (305)
T 2nzi_A           84 QGGSVS-GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL  162 (305)
T ss_dssp             TTEEEE-EEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEE
T ss_pred             CCCCcc-ceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEE
Confidence            988754 7788999887765432     356778899999999999999999999999998886432221111 134689


Q ss_pred             EEcc-CCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEE--ecCceEEEEEEE--------------eec
Q psy11701        183 TIEN-LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYT--VDGKTVVLTCRV--------------FGA  245 (745)
Q Consensus       183 ~i~~-v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v--~~g~~~~l~C~~--------------~~~  245 (745)
                      .|.+ +..+|+|.|+|.|.|..|.....+.|.|...| ..   |....+  ..+..+.|.|..              ...
T Consensus       163 ~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P-~~---p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~  238 (305)
T 2nzi_A          163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP-DP---PRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKC  238 (305)
T ss_dssp             EETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCC-CC---CEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEE
T ss_pred             EEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCC-CC---CCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEe
Confidence            9999 99999999999999999999888888887532 11   111111  234556666653              222


Q ss_pred             CCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEE
Q psy11701        246 PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQ  297 (745)
Q Consensus       246 p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~  297 (745)
                      +.....|.+.+..         ....|.|.++...+.|.|+|.|.|..|...
T Consensus       239 ~~~~~~w~~~~~~---------~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~  281 (305)
T 2nzi_A          239 ATTAERWLRVGQA---------RETRYTVINLFGKTSYQFRVIAENKFGLSK  281 (305)
T ss_dssp             ETTSCCEEEEEEE---------SSSEEEECSCCSSCEEEEEEEEEETTEECC
T ss_pred             cCCCCccEECccc---------cCceEEecCCCCCCeEEEEEEEEeCCcccC
Confidence            2222333332211         245799999999999999999999998753

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.96  E-value=2.5e-28  Score=246.03  Aligned_cols=265  Identities=17%  Similarity=0.207  Sum_probs=205.1

Q ss_pred             ceeEeeCCCeEEEEEEEeecC-CCeEEEEeCCEeccCC-CCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        133 EFINAAEEETVTFECKASGLP-EPEIHWVHNGKPISQA-PPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV  210 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~g~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~  210 (745)
                      ....+.+|+++.|.|.+.+.+ .+.+.|+|+|..+... ....+....++.|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   92 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKI   92 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEEC
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEEE
Confidence            356789999999999998877 7799999998754322 22345555677999999999999999999999988877777


Q ss_pred             EEEEeecCCeeeeCCC---ceEEecCceEEEEEEE------eecCCCeEEEeeCCEEccCc-eEEEeecCcEEEcccCCC
Q psy11701        211 YVNVLAHAPEITEAPK---DEYTVDGKTVVLTCRV------FGAPKPEVNWIHNQKELTGG-RYTILETGDLKITDVAFA  280 (745)
Q Consensus       211 ~l~v~~~~p~~~~~~~---~~~v~~g~~~~l~C~~------~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~  280 (745)
                      .+.+...+|.+...+.   ...+..|+++.|.|.+      .+.|.+.+.|++++..+... .......+.|.|.++...
T Consensus        93 ~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~  172 (315)
T 1itb_B           93 SAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK  172 (315)
T ss_dssp             CCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGG
T ss_pred             EEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceeh
Confidence            7777666666544432   3467889999999998      78888999999999988532 222345678999999999


Q ss_pred             CCEEEEEEEE-eCCceE---EEEEEEEEe-----ecceeecCCCc-EEEecCCeEEEEEEEEecCCCCcEEEEeeCCeec
Q psy11701        281 DSGEYTCFAR-NKLGTA---QGSGSLTVK-----EHTHITDQPED-YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPI  350 (745)
Q Consensus       281 d~G~Y~C~~~-n~~g~~---~~~~~l~v~-----~~p~~~~~p~~-~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~  350 (745)
                      |+|.|+|.|. |..|..   ...+.+.+.     .+|.+...+.. ..+..|+.+.|.|.+.+.|.  +.+.|++++..+
T Consensus       173 d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~--p~i~W~~~g~~i  250 (315)
T 1itb_B          173 HRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLS--DIAYWKWNGSVI  250 (315)
T ss_dssp             GCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTT--SEEEEEETTEEC
T ss_pred             hCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCC--CeeEEEECCEEC
Confidence            9999999999 777775   334444443     45666555543 46789999999999999886  679999999988


Q ss_pred             cCCCCCe----EEEc---------CCeEEEEecCCCCC-CEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        351 DFESEPR----FVQS---------NDYSLTVTKSSELD-SGQYTCRAQTELDFIEAQATLTVQ  399 (745)
Q Consensus       351 ~~~~~~~----~~~~---------~~~~l~i~~~~~~~-~g~y~c~a~n~~g~~~~~~~l~v~  399 (745)
                      .......    ....         ....|.|..+...| .|.|+|.|.|..|.....+.|.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          251 DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             CTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             CcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            7533211    1111         12489999999999 999999999999999988888764

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.96  E-value=1.8e-27  Score=244.65  Aligned_cols=304  Identities=16%  Similarity=0.190  Sum_probs=216.8

Q ss_pred             eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccC-----------CCCCCceee-------cCceEEEccCCCCCCEEE
Q psy11701        134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ-----------APPNPRRKV-------GPNRITIENLRKSDTGNY  195 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~-----------~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y  195 (745)
                      ...+.+|+++.|.|.+.+.|.+.+.|+|++..+..           .....++..       ....|.|.+++.+|+|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            34678999999999999889999999999854210           111223321       356899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEc
Q psy11701        196 GCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKIT  275 (745)
Q Consensus       196 ~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~  275 (745)
                      +|.+.|..+    .+.|.|..    +...|. ..+.+|++++|.|.+.+.|.+.+.|++++..+      ....+.|.|.
T Consensus        83 ~C~~~n~~~----~~~l~V~~----~~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i~  147 (363)
T 1wio_A           83 ICEVEDQKE----EVQLLVFG----LTANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVS  147 (363)
T ss_dssp             EEEETTEEE----EEEEEEEE----EEESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCE------EEESSEEEEC
T ss_pred             EEEEEECCC----cEEEEEEe----CCCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc------cccceEEEEe
Confidence            999987643    45566653    223332 46789999999999999898999999987543      2356789999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecC---CCCcEEEEeeCCeeccC
Q psy11701        276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDP---SLKLSIVWLRGSEPIDF  352 (745)
Q Consensus       276 ~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~---~~~~~i~W~~~~~~~~~  352 (745)
                      ++..+|+|.|+|.|.|..+.....+.+.|...|..   +....+..|+.+.|.|.+.+.+   .+.+.+.|++++..+..
T Consensus       148 ~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~  224 (363)
T 1wio_A          148 QLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSK  224 (363)
T ss_dssp             SBCGGGCEECEEEEEETTEEEEECCEECEECCSCS---EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCC
T ss_pred             eCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCC---CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccc
Confidence            99999999999999998777777777777755532   3556678899999999887732   12478999999887653


Q ss_pred             C------CCCeEEEc-----------C--CeEEEEecCCCCCCEEEEEEEEeC--CceEEEEEEEEEeccCCCCCCceeE
Q psy11701        353 E------SEPRFVQS-----------N--DYSLTVTKSSELDSGQYTCRAQTE--LDFIEAQATLTVQVPLEAPSNFTLI  411 (745)
Q Consensus       353 ~------~~~~~~~~-----------~--~~~l~i~~~~~~~~g~y~c~a~n~--~g~~~~~~~l~v~~pp~~P~~~~~~  411 (745)
                      .      ....+...           .  ...|.|..+...|.|.|+|.|.|.  .|.....+.|.|...++.+..+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~g~~~~l~C~  304 (363)
T 1wio_A          225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCE  304 (363)
T ss_dssp             CEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEECCCSSSEEEE
T ss_pred             eEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEecCCCeeEEEE
Confidence            1      02222221           2  348999999999999999999999  9988888888887544444344332


Q ss_pred             EeecC--ceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecC
Q psy11701        412 QVIDA--KKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG  485 (745)
Q Consensus       412 ~~~~~--~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~  485 (745)
                      . .+.  ..+.+.|.                    +++....         ....+.|..+...+...|+|.|.|.
T Consensus       305 ~-~g~p~p~~~i~W~--------------------~~~~~~~---------~~~~l~i~~v~~~d~G~Y~C~a~~~  350 (363)
T 1wio_A          305 V-WGPTSPKLMLSLK--------------------LENKEAK---------VSKREKAVWVLNPEAGMWQCLLSDS  350 (363)
T ss_dssp             E-ESSCCTTCCEEEE--------------------CSSSSCS---------EEESSSEEEESSCCSEEEEEEECSS
T ss_pred             E-ccccCCCccEEEE--------------------eCCCcee---------eeeeeeeeeeccccceeEEEEEecC
Confidence            2 111  11223333                    3222111         1234466788888899999999864

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.95  E-value=5.6e-27  Score=237.26  Aligned_cols=260  Identities=19%  Similarity=0.287  Sum_probs=178.1

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeCCEecc------CCCCCCcee---------ecCceEEEccCCCC
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPIS------QAPPNPRRK---------VGPNRITIENLRKS  190 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~------~~~~~~~~~---------~~~~~L~i~~v~~~  190 (745)
                      .+...|....+.+|+++.|.|.+.+. |.+.++|+|++....      ......+..         .....|.|.+++.+
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   84 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA   84 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence            45666888899999999999999886 888999999875432      011112222         33457999999999


Q ss_pred             CCEEEEEEEEeCCceEE-----EEEEEEEeecC--CeeeeCCCceEEecCceEEEEEEEeecCCC--eEEEeeCCEEccC
Q psy11701        191 DTGNYGCNATNSLGYVY-----KDVYVNVLAHA--PEITEAPKDEYTVDGKTVVLTCRVFGAPKP--EVNWIHNQKELTG  261 (745)
Q Consensus       191 d~G~Y~C~~~~~~g~~~-----~~~~l~v~~~~--p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~  261 (745)
                      |+|.|+|.+.|..+...     ..+.|.|...+  |.+. .+ ...+.+|+.++|.|.+.+.|.+  .+.|++++..+..
T Consensus        85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~  162 (327)
T 2wng_A           85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS-GP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSD  162 (327)
T ss_dssp             GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE-CC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee-cc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccc
Confidence            99999999999865411     23566665433  2333 33 4567889999999999988765  8999999998865


Q ss_pred             ceEEEee---------cCcEEEcccCCCCCEEEEEEEEeCCce---EEEEEEE--EEeecceeecCCCcEEEecCCeEEE
Q psy11701        262 GRYTILE---------TGDLKITDVAFADSGEYTCFARNKLGT---AQGSGSL--TVKEHTHITDQPEDYEVEAGQSATF  327 (745)
Q Consensus       262 ~~~~~~~---------~~~l~i~~~~~~d~G~Y~C~~~n~~g~---~~~~~~l--~v~~~p~~~~~p~~~~~~~g~~~~l  327 (745)
                      .......         ...|.|.....+|.|.|+|.|.|..+.   ......+  .+..+|.+...+..  +..|+.+.|
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l  240 (327)
T 2wng_A          163 FQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNV  240 (327)
T ss_dssp             EEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEE
T ss_pred             cccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEEE
Confidence            4432211         124677777777789999999998765   2333333  33455554443332  568999999


Q ss_pred             EEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCC------eEEEEecCCCCCCEEEEEEEEeCCceE
Q psy11701        328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND------YSLTVTKSSELDSGQYTCRAQTELDFI  390 (745)
Q Consensus       328 ~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~~~g~y~c~a~n~~g~~  390 (745)
                      .|.+.+.+++.+.+.|++++..+............+      ..|.|..+...|.|.|+|.|.|..|..
T Consensus       241 ~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          241 TCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             EEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            999999765456899999998875322222222222      347788888899999999999999864

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.95  E-value=7.4e-27  Score=235.05  Aligned_cols=257  Identities=18%  Similarity=0.317  Sum_probs=190.7

Q ss_pred             ceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCCCCCceee----cCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        133 EFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      ....+.+|+.+.|.|... +.|.+.++|+|+|..+....   +...    ....|.|.+++.+|+|.|+|.+.|..|...
T Consensus         9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~   85 (312)
T 2y23_A            9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSP---RLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS   85 (312)
T ss_dssp             CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCT---TEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE
T ss_pred             eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCC---CEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE
Confidence            345678999999999885 57889999999999987432   3222    225899999999999999999999887544


Q ss_pred             EEEEEEEee-----------cCCeeeeCCC-ceEEecCceEEEEEEEe-ecCCCeEEEeeCCEEccC-ceEEEeecC---
Q psy11701        208 KDVYVNVLA-----------HAPEITEAPK-DEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKELTG-GRYTILETG---  270 (745)
Q Consensus       208 ~~~~l~v~~-----------~~p~~~~~~~-~~~v~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~-~~~~~~~~~---  270 (745)
                       ++.+.|..           .+|.+...+. ...+.+|+.+.|.|.+. +.|.+.+.|++++..+.. .++.+..+.   
T Consensus        86 -s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~  164 (312)
T 2y23_A           86 -SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG  164 (312)
T ss_dssp             -EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTT
T ss_pred             -EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCC
Confidence             45555532           0444444333 67788999999999998 789999999999998864 344443332   


Q ss_pred             --cEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe---------------------ecceeecCCCcEEEecCCeEEE
Q psy11701        271 --DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK---------------------EHTHITDQPEDYEVEAGQSATF  327 (745)
Q Consensus       271 --~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~---------------------~~p~~~~~p~~~~~~~g~~~~l  327 (745)
                        .|.|.+++.+|+|.|+|.+.+..+.....  +.+.                     .+|.+.. +....+..|+.+.|
T Consensus       165 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~v~~G~~~~l  241 (312)
T 2y23_A          165 IIEMFMEKLQDEDEGTYTFQLQDGKATNHST--VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSWEVTGECNVLL  241 (312)
T ss_dssp             EEEEEESCCCGGGCEEEEEEEESSSCEEEEE--EEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE-EEEEEEETTTEEEE
T ss_pred             EEEEEEccCCcccCEeEEEEEEeCCceEEEE--EEEcchhhhhhcccccccccchhhccCCceee-cceEEEeCCCEEEE
Confidence              39999999999999999998654443333  3331                     1122221 11357789999999


Q ss_pred             EEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        328 RCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV  398 (745)
Q Consensus       328 ~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v  398 (745)
                      .|.+.+.|.+ ..+.|++++..+......... .....|.|..+...|.|.|+|.|.|..|.....+.|.+
T Consensus       242 ~C~~~~~p~~-~~v~W~~~g~~~~~~~~~~~~-~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          242 KCKVANIKKE-THIVWYKDEREISVDEKHDFK-DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             EEEEESCCSS-CEEEEEETTEEEEEECCC-----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             EEEEcCCCCC-CEEEEeeCCEECCCCCcEEEE-CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            9999998763 389999999887643332222 33468999999999999999999999999988887765

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.95  E-value=1.7e-26  Score=234.53  Aligned_cols=270  Identities=16%  Similarity=0.221  Sum_probs=198.0

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeec----CCCeEEEEeCC--Ee-------------ccCCCCCCceee-----cCceE
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGL----PEPEIHWVHNG--KP-------------ISQAPPNPRRKV-----GPNRI  182 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~----p~~~v~W~~~g--~~-------------~~~~~~~~~~~~-----~~~~L  182 (745)
                      .+...+....+.+|+++.|.|.+.+.    +.+.+.|+|++  ..             +. .....+...     .+..|
T Consensus        16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~L   94 (331)
T 3u83_A           16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVL-APYRERVEFLRPSFTDGTI   94 (331)
T ss_dssp             -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEEC-TTCTTTEEESSCSSSBCCE
T ss_pred             ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcC-cccCCceEecccCCCCceE
Confidence            34455777889999999999999875    44589999954  11             11 112223332     35689


Q ss_pred             EEccCCCCCCEEEEEE-EEeCCceEEEEEEEEEeecCCeee--eCCCceEEecC---ceEEEEEE-EeecCCCeEEEeeC
Q psy11701        183 TIENLRKSDTGNYGCN-ATNSLGYVYKDVYVNVLAHAPEIT--EAPKDEYTVDG---KTVVLTCR-VFGAPKPEVNWIHN  255 (745)
Q Consensus       183 ~i~~v~~~d~G~Y~C~-~~~~~g~~~~~~~l~v~~~~p~~~--~~~~~~~v~~g---~~~~l~C~-~~~~p~~~i~W~~~  255 (745)
                      .|.+++.+|+|.|+|. +.+..+.....+.|.|.. +|.+.  ..+....+.+|   +.++|.|. +.+.|.+.+.|+++
T Consensus        95 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~  173 (331)
T 3u83_A           95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA-KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR  173 (331)
T ss_dssp             EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB-CCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES
T ss_pred             EEcccCcccCcEEEEEEEecCCCccEEEEEEEEec-CCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcC
Confidence            9999999999999998 556677777788888886 55442  35566778888   78999998 88889999999995


Q ss_pred             CEEccCceEEE------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceeecC-CCcEEEecCCeEEEE
Q psy11701        256 QKELTGGRYTI------LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQ-PEDYEVEAGQSATFR  328 (745)
Q Consensus       256 ~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~~~-p~~~~~~~g~~~~l~  328 (745)
                      +..........      .....|.|.++..+|+|.|+|.|.|..+..+..+.|.|..+|.+... +....+..|+.+.|.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~  253 (331)
T 3u83_A          174 LKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLT  253 (331)
T ss_dssp             SCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEE
T ss_pred             CCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEE
Confidence            32211111111      11235888888999999999999999999888999999888876533 344557789999999


Q ss_pred             EEEEecCCCCcE-EEEeeCCeeccCCCCCeEEEcCCeEEEEe-cCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCCCC
Q psy11701        329 CNAVSDPSLKLS-IVWLRGSEPIDFESEPRFVQSNDYSLTVT-KSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAP  405 (745)
Q Consensus       329 C~~~~~~~~~~~-i~W~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P  405 (745)
                      |.+.+.|.  +. +.|++++..+..  .  . ......|.|. .+...|.|.|+|.|.|..|.....+.|.|...+...
T Consensus       254 C~~~g~p~--p~~i~W~~~~~~~~~--~--~-~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~  325 (331)
T 3u83_A          254 CKADANPP--ATEYHWTTLNGSLPK--G--V-EAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALE  325 (331)
T ss_dssp             EEEEEESC--CCEEEEEETTBSCCT--T--E-EEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC-----
T ss_pred             EeCcCCCC--CCEEEEEECCCcccc--c--c-eecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccchhh
Confidence            99999987  45 999999887652  2  1 1234689999 899999999999999999999888888887655443

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.95  E-value=1.1e-27  Score=238.67  Aligned_cols=272  Identities=16%  Similarity=0.214  Sum_probs=203.4

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .+|.|...+....+.+|+++.|.|.+.+.    +.|++++.....    .......+.|.|.+++.+|+|.|+|.+.|..
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   74 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWT----LYSDGSSSILSTNNATFQNTGTYRCTEPGDP   74 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSSCE----ECCBTTEEEEEESSCCGGGCSCEEECCCC--
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCceE----EeccCceEEEEEcccccccCEEEEEEEccCC
Confidence            47888888888899999999999999873    899976542110    0011123589999999999999999999988


Q ss_pred             ceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCC--CeEEEeeC-CEEcc-CceEEEeecCcEEEcccCC
Q psy11701        204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPK--PEVNWIHN-QKELT-GGRYTILETGDLKITDVAF  279 (745)
Q Consensus       204 g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~--~~i~W~~~-~~~~~-~~~~~~~~~~~l~i~~~~~  279 (745)
                      +.....+.|.|...+..+...+....+.+|+.++|.|.+.+ |.  +.+.|+++ +..+. ..++.....+.|.|.++..
T Consensus        75 ~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (292)
T 4dkd_C           75 LGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKF  153 (292)
T ss_dssp             --CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCG
T ss_pred             CCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCCCH
Confidence            87778888888864544566777888999999999999987 44  67999997 44443 3345555566799999999


Q ss_pred             CCCEEEEEEEEeCCceE-EEEEEEEEee----cceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCC
Q psy11701        280 ADSGEYTCFARNKLGTA-QGSGSLTVKE----HTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES  354 (745)
Q Consensus       280 ~d~G~Y~C~~~n~~g~~-~~~~~l~v~~----~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~  354 (745)
                      .|+|.|+|.+.|..+.. +..+.|.|..    +|.+...+....+..|+.+.|.|.+.+.++ .+.+.|++++..+....
T Consensus       154 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~~~w~~~~~~~~~~~  232 (292)
T 4dkd_C          154 IQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDV-NFDVFLQHNNTKLAIPQ  232 (292)
T ss_dssp             GGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSS-CCEEECCBSSCCCCCCB
T ss_pred             HHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCC-ceEEEEeCCCcccccCc
Confidence            99999999999887755 3478888886    777777777666679999999999998764 47899999887664322


Q ss_pred             CCeEEE---cCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCCCC
Q psy11701        355 EPRFVQ---SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAP  405 (745)
Q Consensus       355 ~~~~~~---~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P  405 (745)
                      ...+..   .....|.|..+...|.|.|+|.|.|..|.....+.|.|.....++
T Consensus       233 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~  286 (292)
T 4dkd_C          233 QSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS  286 (292)
T ss_dssp             EEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-------
T ss_pred             cceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence            211111   123479999999999999999999999999999988887665443

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.95  E-value=3.3e-26  Score=223.81  Aligned_cols=236  Identities=15%  Similarity=0.221  Sum_probs=184.4

Q ss_pred             EeeCCCeEEEEEEEee-cCCC--eEEEEeCCEeccCCCCCCceeecCceEEEccC---CCCCCEE--EEEEEEeCCceEE
Q psy11701        136 NAAEEETVTFECKASG-LPEP--EIHWVHNGKPISQAPPNPRRKVGPNRITIENL---RKSDTGN--YGCNATNSLGYVY  207 (745)
Q Consensus       136 ~v~~G~~~~l~C~~~~-~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v---~~~d~G~--Y~C~~~~~~g~~~  207 (745)
                      .+.+|+++.|.|.+.+ .|.+  .++|+|+|..+..     ........|.+..+   ...|+|.  |+|.+.|..|...
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~-----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~   88 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE   88 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC-----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc-----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcE
Confidence            6889999999999998 7776  9999999998863     33444556777666   7788885  9999999999988


Q ss_pred             EEEEEEEeecCC-eeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCCCEEEE
Q psy11701        208 KDVYVNVLAHAP-EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYT  286 (745)
Q Consensus       208 ~~~~l~v~~~~p-~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  286 (745)
                      ..+.|.|...++ .+.  +....+.+|+.++|.|.+.  |.+.+.|  ++..+....    ..+.|.|..+..+|.|.|+
T Consensus        89 ~~~~l~V~~~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~----~~~~l~i~~~~~~~~g~Y~  158 (265)
T 2oz4_A           89 TLQTVTIYSFPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG----PRAQLLLKATPEDNGRSFS  158 (265)
T ss_dssp             EEEEEEEECCCCCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS----SEECCEEECCGGGTTEEEE
T ss_pred             EEEEEEEeCCCCceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC----CcEEEEEccccccCCceEE
Confidence            888999875443 333  4456688999999999997  8889999  776663211    2246889999999999999


Q ss_pred             EEEEeCC-ceEE---EEEEEEEeecceeecC--CCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEE
Q psy11701        287 CFARNKL-GTAQ---GSGSLTVKEHTHITDQ--PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ  360 (745)
Q Consensus       287 C~~~n~~-g~~~---~~~~l~v~~~p~~~~~--p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~  360 (745)
                      |.|.|.. |...   ..+.|.|..+|.+...  |....+..|+.+.|.|.+.+.|.  +.+.|++++..+.         
T Consensus       159 C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~--p~i~W~~~~~~~~---------  227 (265)
T 2oz4_A          159 CSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL--PELKCLKDGTFPL---------  227 (265)
T ss_dssp             EEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESC--CEEEEEETTTEEC---------
T ss_pred             EEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCC--CeEEEEECCcccC---------
Confidence            9998544 6544   6788888888776443  55678899999999999999986  7899999986222         


Q ss_pred             cCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEec
Q psy11701        361 SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV  400 (745)
Q Consensus       361 ~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~  400 (745)
                       ..+.+  ..+...|.|.|+|.|.|..|.....+.|.|..
T Consensus       228 -~~g~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          228 -PIGES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             -CTTSC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             -CCCcE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence             11112  23677999999999999999999999988864

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=232.63  Aligned_cols=266  Identities=20%  Similarity=0.273  Sum_probs=193.6

Q ss_pred             ceeEeeCCCeEEEEEEEeec-CCCeEEEEeCCEecc--------------CCCCCCceee-----cCceEEEccCCCCCC
Q psy11701        133 EFINAAEEETVTFECKASGL-PEPEIHWVHNGKPIS--------------QAPPNPRRKV-----GPNRITIENLRKSDT  192 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~--------------~~~~~~~~~~-----~~~~L~i~~v~~~d~  192 (745)
                      ...++.+|++++|.|.+.+. +.+.++|+|++....              ......+...     .+.+|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            35678899999999998654 445899998643221              0111122221     345799999999999


Q ss_pred             EEEEEEEEeC-CceEEEEEEEEEeecCCe-eeeCCCceEEecCceEEEEEEE-eecCCCeEEEeeCCEEccCceEEE---
Q psy11701        193 GNYGCNATNS-LGYVYKDVYVNVLAHAPE-ITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELTGGRYTI---  266 (745)
Q Consensus       193 G~Y~C~~~~~-~g~~~~~~~l~v~~~~p~-~~~~~~~~~v~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~---  266 (745)
                      |.|+|.|.|. .|.....+.+.+...++. +...+.......|+.+.|.|.+ .+.|.+.+.|++++..+.......   
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~  166 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNE  166 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTS
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeee
Confidence            9999999986 455666667776653332 2344555556678999999985 678999999999987765332221   


Q ss_pred             --eecCcEEEcccCCCCCEEEEEEEEeCCce--EEEEEEEEEeecceeecCC-CcEEEecCCeEEEEEEEEecCCCCcEE
Q psy11701        267 --LETGDLKITDVAFADSGEYTCFARNKLGT--AQGSGSLTVKEHTHITDQP-EDYEVEAGQSATFRCNAVSDPSLKLSI  341 (745)
Q Consensus       267 --~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~--~~~~~~l~v~~~p~~~~~p-~~~~~~~g~~~~l~C~~~~~~~~~~~i  341 (745)
                        ...+.|.|..+...|.|.|+|.|.|..+.  ....+.|.|..+|.+...+ ....+..|+.+.|.|.+.+.|.+ ..+
T Consensus       167 ~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p-~~v  245 (308)
T 4fom_A          167 TATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP-FKS  245 (308)
T ss_dssp             CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCE-EEE
T ss_pred             cccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCC-cEE
Confidence              11235999999999999999999998765  4556677777777765444 34456778999999999998862 379


Q ss_pred             EEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCC
Q psy11701        342 VWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLE  403 (745)
Q Consensus       342 ~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~  403 (745)
                      .|++++..+...    ........+.|..+...|.|.|+|.|.|..|..+..+.|.|..||.
T Consensus       246 ~W~k~~~~~~~~----~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          246 VWSRLDGQWPDG----LLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             ECCBSSSCCCSS----CBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred             EEEECCeECCCc----EEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence            999998776421    1223445567788999999999999999999999999999987764

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.94  E-value=1.4e-25  Score=225.58  Aligned_cols=276  Identities=12%  Similarity=0.163  Sum_probs=199.7

Q ss_pred             cCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEE
Q psy11701        312 DQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE  391 (745)
Q Consensus       312 ~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~  391 (745)
                      .++..+.+..|++++|.|.+.+.+. .+.|.|++++..+.. ...+. ....+.|.|.++...|.|.|+|.   ..|...
T Consensus        11 ~p~~~v~~~~G~~v~l~C~~~~~~~-~~~i~W~~~~~~~~~-~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~---~~g~~~   84 (325)
T 1n26_A           11 VARGVLTSLPGDSVTLTCPGVEPED-NATVHWVLRKPAAGS-HPSRW-AGMGRRLLLRSVQLHDSGNYSCY---RAGRPA   84 (325)
T ss_dssp             CCTTEEEECTTCCEEEECTTSCTTC-CSEEEEEEECSSSSC-CCEEE-EEESSEEEECSCCGGGCEEEEEE---SSSSCS
T ss_pred             cCCCcEECCCCCcEEEEeCCCCCCC-CceEEEEECCccCCc-ccccc-ccccceEEecccchhhCeEeEEE---eCCEEe
Confidence            3344444579999999999887553 478999998765532 11222 23457899999999999999999   367777


Q ss_pred             EEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCC-CCce-eEEE-EccCceeEEEec
Q psy11701        392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDG-EGSI-RELI-VNKGESTTTEVD  468 (745)
Q Consensus       392 ~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~-~~~~-~~~~-~~~~~~~~~~i~  468 (745)
                      ..+.|.|..||.+|. +.+.......++.+.|+++...   +...+|.|.|+..... ...+ .... .......++.+.
T Consensus        85 ~~~~L~V~~pP~~P~-l~c~~~~~~~~~~c~W~~~~~~---~~~~~y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~  160 (325)
T 1n26_A           85 GTVHLLVDVPPEEPQ-LSCFRKSPLSNVVCEWGPRSTP---SLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLA  160 (325)
T ss_dssp             CEEEEEECCCCCCCC-CEEEBSSTTSCEEEEECCSSCC---CTTCEEEEEEEEESSSSCEEEEEEEEEETTTTEEEEEEC
T ss_pred             eeEEEEeccCCCCCc-eeEEeecCCCcEEEEECCCCCC---CCCceEEEEEEEccCCCCCcccccCCCCCCCCCEEEEEC
Confidence            889999999999997 7664213367899999985432   2347899988764221 1111 1221 113456788888


Q ss_pred             ccc-cCcceeEEEEEecCCCCCCCCcceEEeC-CCCCCCCCCceeEEEcCC--ceEEEEeeCCCC--CCCceeeEEEEEE
Q psy11701        469 KFV-PASKNFARVLAFNGAYNGPPSEIISFVT-PEGVPGTVQSLEAIPLGS--SAFYLKWVKPEQ--PNGVLMGYKIKYQ  542 (745)
Q Consensus       469 ~L~-~~~~Y~~~V~a~n~~G~g~~S~~~~~~t-~~~~P~~p~~~~~~~~~~--~~i~l~W~~p~~--~~g~i~~Y~v~~~  542 (745)
                      .+. +.+.|.|+|.|.|..|.+. +....+.+ ....|++|.++.+...+.  +++.|+|++|..  .++.+++|.|+|+
T Consensus       161 ~~~~~~~~Y~f~v~A~N~~G~~~-s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr  239 (325)
T 1n26_A          161 VPEGDSSFYIVSMCVASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYR  239 (325)
T ss_dssp             CCTTCCCEEEEEEEEEETTEEEE-CCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEE
T ss_pred             CCcccCcEEEEEEEEEcCCCCcc-cCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEE
Confidence            876 7899999999999999874 33344443 345688999999888753  689999999975  5678999999999


Q ss_pred             EcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCC
Q psy11701        543 SVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKN  604 (745)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~  604 (745)
                      ..+...|....     + .....++.|.+|.|++.|+|+|+|.|..|.|.+|+++..+...+
T Consensus       240 ~~~~~~W~~~~-----~-~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~  295 (325)
T 1n26_A          240 AERSKTFTTWM-----V-KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTP  295 (325)
T ss_dssp             ETTCSCCEEEE-----C-GGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEECC
T ss_pred             eCCCCCCEEEc-----c-cCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccceec
Confidence            87654443221     1 23457899999999999999999999999999998876554443

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.94  E-value=2.6e-26  Score=228.02  Aligned_cols=266  Identities=16%  Similarity=0.218  Sum_probs=178.5

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      |.+........+.+|+++.|.|.+.+.    ++|++++..+.............+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   76 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGL   76 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC----
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCC
Confidence            344445666788999999999999874    9999999887311000000001358999999999999999999998876


Q ss_pred             ---EEEEEEEEEeecCCeeeeCCCc---eEEecCceEEEEEEEeecCCCeEEEeeCC--EEccCceEEEeecCcEEEccc
Q psy11701        206 ---VYKDVYVNVLAHAPEITEAPKD---EYTVDGKTVVLTCRVFGAPKPEVNWIHNQ--KELTGGRYTILETGDLKITDV  277 (745)
Q Consensus       206 ---~~~~~~l~v~~~~p~~~~~~~~---~~v~~g~~~~l~C~~~~~p~~~i~W~~~~--~~~~~~~~~~~~~~~l~i~~~  277 (745)
                         ....+.|.|......+......   ..+.+|+.+.|.|.+. .|.+.+.|++.+  ..+.. .+ . ....+.    
T Consensus        77 ~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~-~~-~-~~~~~~----  148 (289)
T 3mjg_X           77 ETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPV-PY-D-HQRGFS----  148 (289)
T ss_dssp             --CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCC-CE-E-TTTEEE----
T ss_pred             CcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccce-ee-c-CCcCee----
Confidence               2334444444211111111112   5688999999999998 677788888864  22221 11 0 111121    


Q ss_pred             CCCCCEEEEEEEEeCCceEE-EEEEEEEee--cceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCC
Q psy11701        278 AFADSGEYTCFARNKLGTAQ-GSGSLTVKE--HTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFES  354 (745)
Q Consensus       278 ~~~d~G~Y~C~~~n~~g~~~-~~~~l~v~~--~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~  354 (745)
                      ...|+|.|+|.|.|..+... ....+.|..  +|.+...+....+..|+.+.|.|.+.+.|.  +.+.|++++.......
T Consensus       149 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~--p~v~W~~~~~~~~~~~  226 (289)
T 3mjg_X          149 GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEV--VNFEWTYPRKESGRLV  226 (289)
T ss_dssp             ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSS--BEEEEECTTSSSSCCC
T ss_pred             eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCC--cceEEEcCCccCCCcc
Confidence            35799999999998776643 345666654  555555555567889999999999999775  7899998765443212


Q ss_pred             CCeEEEc------CCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccCCCC
Q psy11701        355 EPRFVQS------NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAP  405 (745)
Q Consensus       355 ~~~~~~~------~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P  405 (745)
                      .......      ....|.|..+...|.|.|+|.|.|..|....++.|.+...+...
T Consensus       227 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~  283 (289)
T 3mjg_X          227 EPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH  283 (289)
T ss_dssp             CCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred             cccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence            2222221      23689999999999999999999999999999999998776544

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.94  E-value=2.8e-27  Score=250.49  Aligned_cols=267  Identities=18%  Similarity=0.281  Sum_probs=180.9

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEee-cCCC-eeEEEECCEecCCCCCe--E--eccC-----CcEEEEccCCCCCCE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGG-TPLP-QTIWSKDGVPINPSDRI--S--QGNY-----GKSLIIKHVEFSDQG  100 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g-~p~~-~v~W~~~~~~i~~~~~~--~--~~~~-----~~~L~i~~~~~~d~G  100 (745)
                      +|.+. +.+....+.+|+.++|.|.+.| .|.+ +|+|+|||.+|......  .  ....     .+.|.|.+++.+|+|
T Consensus       116 ~P~v~-~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  194 (438)
T 1qgc_4          116 APTVS-IFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN  194 (438)
T ss_dssp             CCEEE-EECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred             CCEEE-ecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCC
Confidence            34443 3333333457889999999977 6777 99999999998754111  1  1111     237999999999999


Q ss_pred             EEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecC--CCeEEEEeC--CEeccC--------
Q psy11701        101 SYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLP--EPEIHWVHN--GKPISQ--------  168 (745)
Q Consensus       101 ~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--g~~~~~--------  168 (745)
                      .|+|.|.+..+... ....+.+..++.....|....+.+|+++.|.|.+.|.|  .+.+.|+|+  |+.+..        
T Consensus       195 ~Y~C~a~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~  273 (438)
T 1qgc_4          195 SYTCEATHKTSTSP-IVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGG  273 (438)
T ss_dssp             EEEEEEEETTCSSC-EEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTS
T ss_pred             eEEEEEEecccCCc-eecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecC
Confidence            99999999877642 22222222233344456677899999999999999987  679999996  443320        


Q ss_pred             ------CCCCCceeec------CceEEEccCCCCCCEEEEEEEEeCCc-----eEEEEEEEEEee---cCCeeeeCCCce
Q psy11701        169 ------APPNPRRKVG------PNRITIENLRKSDTGNYGCNATNSLG-----YVYKDVYVNVLA---HAPEITEAPKDE  228 (745)
Q Consensus       169 ------~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~~g-----~~~~~~~l~v~~---~~p~~~~~~~~~  228 (745)
                            .....++...      ...|.|.+++.+|+|.|+|.|.|..+     .......+.|..   .+|.+...+...
T Consensus       274 ~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~  353 (438)
T 1qgc_4          274 TYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGS  353 (438)
T ss_dssp             CCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCG
T ss_pred             CceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCccc
Confidence                  0011222221      24899999999999999999998443     112234566653   345554444344


Q ss_pred             EEecCceEEEEEEEeec-CCC-eEEEeeCCEEccCc---eEEE----eecCcEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy11701        229 YTVDGKTVVLTCRVFGA-PKP-EVNWIHNQKELTGG---RYTI----LETGDLKITDVAFADSGEYTCFARNKLGTAQGS  299 (745)
Q Consensus       229 ~v~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~---~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~  299 (745)
                      .+.+|+.++|.|.+.+. |.+ .+.|++++..+...   ....    .....|.|.++..+| |.|+|.|.|..|.....
T Consensus       354 ~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~  432 (438)
T 1qgc_4          354 AAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  432 (438)
T ss_dssp             GGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEE
T ss_pred             ccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCccee
Confidence            56689999999999987 777 99999998765321   1110    111258898888888 99999999999876554


Q ss_pred             EE
Q psy11701        300 GS  301 (745)
Q Consensus       300 ~~  301 (745)
                      ..
T Consensus       433 ~~  434 (438)
T 1qgc_4          433 KK  434 (438)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.94  E-value=5.6e-27  Score=236.50  Aligned_cols=265  Identities=17%  Similarity=0.280  Sum_probs=176.0

Q ss_pred             CCCCCeeEeeccceeEecC-CcEEEEEEEeec-C-CCeeEEEECCEecCCCCCe--EeccCC-----cEEEEccCCCCCC
Q psy11701         30 RHAPKQQYVTRKKEVALRN-KKVELFCIFGGT-P-LPQTIWSKDGVPINPSDRI--SQGNYG-----KSLIIKHVEFSDQ   99 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~v~~G-~~~~l~C~~~g~-p-~~~v~W~~~~~~i~~~~~~--~~~~~~-----~~L~i~~~~~~d~   99 (745)
                      ..+|..++..+....+..| ++++|.|.+.|. | .++|+|+|||..|......  .....+     +.|.|..+..+|.
T Consensus         5 ~~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~   84 (323)
T 2wqr_A            5 FTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSD   84 (323)
T ss_dssp             CCCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTT
T ss_pred             CCCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCC
Confidence            3466666665554444332 699999999886 4 4699999999998754321  111122     2578888888899


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEE---EecCeE-EecCceeEeeCCCeEEEEEEEeec-CCC---eEEEEeCC-EeccCCC
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSV---LAAPYF-TVEPEFINAAEEETVTFECKASGL-PEP---EIHWVHNG-KPISQAP  170 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V---~~~p~~-~~~~~~~~v~~G~~~~l~C~~~~~-p~~---~v~W~~~g-~~~~~~~  170 (745)
                      |.|+|.|.+..+... ..+.+.+   ...|.+ ...|....+.+|+++.|.|.+.+. |.+   .+.|+|++ ..+....
T Consensus        85 g~Y~C~a~n~~~~~~-~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~  163 (323)
T 2wqr_A           85 RTYTCQVTYQGHTFE-DSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHST  163 (323)
T ss_dssp             CCEEEEEEETTEEEE-EEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCC
T ss_pred             CcEEEEEEeCCCCcc-eeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccccc
Confidence            999999999876543 3232211   123433 444555568899999999999885 555   99999975 4443211


Q ss_pred             C-----CCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE---eecCCeeeeCCCceEEecCceEEEEEEE
Q psy11701        171 P-----NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV---LAHAPEITEAPKDEYTVDGKTVVLTCRV  242 (745)
Q Consensus       171 ~-----~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v---~~~~p~~~~~~~~~~v~~g~~~~l~C~~  242 (745)
                      .     ........+.|.|.++..+|+|.|+|.|.|..+.......+.+   ...+|.+...+.......|+.++|.|.+
T Consensus       164 ~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~  243 (323)
T 2wqr_A          164 RKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLI  243 (323)
T ss_dssp             CEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEE
T ss_pred             CCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEe
Confidence            0     0001112347999999999999999999998643322223321   1246665543322222239999999999


Q ss_pred             eec-CCC-eEEEeeCCEEccCceEEE-----ee------cCcEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        243 FGA-PKP-EVNWIHNQKELTGGRYTI-----LE------TGDLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       243 ~~~-p~~-~i~W~~~~~~~~~~~~~~-----~~------~~~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      .+. |.+ .+.|++++..+....+..     ..      .+.|.|..+..+|.|.|+|.|.|....
T Consensus       244 ~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          244 QNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             eeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            884 433 799999999886543321     11      235899999999999999999998765

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.94  E-value=1.9e-25  Score=232.59  Aligned_cols=357  Identities=13%  Similarity=0.118  Sum_probs=164.0

Q ss_pred             CCeEEEEEEEEecC--CCCcEEEEeeCCeeccCCCCCeEEE-cCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        322 GQSATFRCNAVSDP--SLKLSIVWLRGSEPIDFESEPRFVQ-SNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV  398 (745)
Q Consensus       322 g~~~~l~C~~~~~~--~~~~~i~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v  398 (745)
                      ...+.|+|......  ...+.++|...+..-.......... .....+....+.....+.+++.|.| .+.+.......+
T Consensus        20 ~~~~~L~W~p~~~~~~~i~Y~V~y~~~~~~~W~~~~~c~~~~~~~~~~t~~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~~   98 (414)
T 3se4_A           20 DDNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEK-ENTSSWYEVDSF   98 (414)
T ss_dssp             TTEEEEC----------CEEEEEEEESSCCCCEEEEEEEEESCSCEECCSSCCCTTSCEEEEEEEEE-TTEEEEEECCCB
T ss_pred             CCceEEEEcCCCCCCCCeEEEEEEEECCCCCcEECcCccCCCCCEEECCcccccCCCcEEEEEEEee-CCcCCCEecCce
Confidence            45677888765432  1225666665331111000000001 1223444445677888999999999 554333222111


Q ss_pred             ----eccCCCCCCceeEEeecCceeEEEEEeCCCCC-----cceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecc
Q psy11701        399 ----QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQS-----LRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDK  469 (745)
Q Consensus       399 ----~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~-----~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  469 (745)
                          ..+.++|. +.+..  ..+++.|+|. +....     .++.+.+|+|.||..+....  ..  + ......+.|.+
T Consensus        99 ~~~~~~~~~pP~-v~~~~--~~~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~y~~~~~~~~--~~--~-~~~~~~~~i~~  169 (414)
T 3se4_A           99 TPFRKAQIGPPE-VHLEA--EDKAIVIHIS-PGTKDSVMWALDGLSFTYSLVIWKNSSGVE--ER--I-ENIYSRHKIYK  169 (414)
T ss_dssp             CHHHHCCCCCCE-EEEEE--CSSCEEEEEE-CSSSSCTTTGGGGSSCEEEEEEEETTTCCE--EE--E-EEECSEEEECC
T ss_pred             eecccceeCCCe-EEEEE--cCCEEEEEEE-cCCCCCceeeeecCcEEEEEEEEECCCCce--EE--E-ecCCcEEEEcC
Confidence                13445664 66554  4568999999 43222     14678899999998765432  22  2 33567899999


Q ss_pred             cccCcceeEEEEEecC--CCCCCCCcceEEeCCCCCC-CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEc--
Q psy11701        470 FVPASKNFARVLAFNG--AYNGPPSEIISFVTPEGVP-GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSV--  544 (745)
Q Consensus       470 L~~~~~Y~~~V~a~n~--~G~g~~S~~~~~~t~~~~P-~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~--  544 (745)
                      |.|++.|.|+|+|+|.  .|.|++|....+.|.+++| .+|.++.+...+ +++.|.|++|..    +.+|.|+|+..  
T Consensus       170 L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~-~~~~l~W~pp~~----~~~Y~v~y~~~~~  244 (414)
T 3se4_A          170 LSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDYTYA----NMTFQVQWLHAFL  244 (414)
T ss_dssp             CCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEET-TEEEEEEECSSS----SCEEEEEEEESGG
T ss_pred             CCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEec-CCeEEEECCCCC----CeEEEEEEEehhc
Confidence            9999999999999994  7888889888888877655 578899887765 679999999742    35999999973  


Q ss_pred             ------CCcccCCcccccccccCCCcceeeec-CCCCCccEEEEEEEEecCCCCCCcceeeecccCC----CCCCCCCCC
Q psy11701        545 ------KGTKVGPLLERLPYISDPTTTSAKLA-GLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKN----PDNVEGRGS  613 (745)
Q Consensus       545 ------~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~----~~~~~~~~~  613 (745)
                            +...|.....    ..+.....+.+. +|.+++.|.|+|.|+|..|.|++|....+.+...    ++.+.+.+ 
T Consensus       245 ~~~~~~~~~~w~~~~~----~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~t~~~~~~~pP~l~~~~-  319 (414)
T 3se4_A          245 KRNPGNHLYKWKQIPD----CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRS-  319 (414)
T ss_dssp             GSCCCC--CCCCBCST----TTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEETTCC-------------
T ss_pred             cccccccccCceECCC----ccCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccccccchhccccCCCeEEEEE-
Confidence                  1122221110    112234666776 6999999999999999999999986554432211    11122222 


Q ss_pred             CCcceeEEEeecCccc----cCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCC
Q psy11701        614 TPNNLVISWTAMPEIE----HNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEG  689 (745)
Q Consensus       614 ~p~~~~v~W~~~~~~~----~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~  689 (745)
                      ..++|.|+|.+|....    .+|.+..|.|.|...+...                                        .
T Consensus       320 ~~~si~v~W~~P~~~~~~~~~~~~~~~Y~v~y~~~~~~~----------------------------------------~  359 (414)
T 3se4_A          320 LSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNA----------------------------------------E  359 (414)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEEEEEECCCCccccchhhcCCeEEEEEEEECCCCc----------------------------------------e
Confidence            2467888888766543    1345677777665321110                                        0


Q ss_pred             CeEEEEEecCCCcEEEecccccCCcceeEEEEec----CcccCCCCcceEEeCCCCCc
Q psy11701        690 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFN----GAYNGPPSEIISFVTPEGGT  743 (745)
Q Consensus       690 ~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~----~~G~g~~s~~~~~~t~~~~~  743 (745)
                        ..  + ....+.+.|.+|+|++.|.|+|+|.+    .+|.|++|+++.++|..|.+
T Consensus       360 --~~--~-~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~~~g~g~~S~~~~~~T~~~~~  412 (414)
T 3se4_A          360 --RK--I-IEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNT  412 (414)
T ss_dssp             ----------------------------------------------------------
T ss_pred             --EE--E-EecCCeEEeCCCCCCCeEEEEEEEEecccccCCCCCCCCCEeEEeCCCCc
Confidence              00  0 12456788999999999999999999    36999999999999977653

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.94  E-value=3.8e-26  Score=229.79  Aligned_cols=261  Identities=14%  Similarity=0.199  Sum_probs=175.9

Q ss_pred             EEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEE
Q psy11701        116 YSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNY  195 (745)
Q Consensus       116 ~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  195 (745)
                      ..+...+..+|.|...|. ..+.+|++++|.|.+.+. .+.+.|+|+|..+...   .........|.|.+++.+|+|.|
T Consensus        15 ~~~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y   89 (316)
T 3vh8_G           15 KGSHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI---FHGRIFQESFNMSPVTTAHAGNY   89 (316)
T ss_dssp             ---------CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH---HHHCCBSSCEEECSCCGGGCEEE
T ss_pred             cccccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCcccee---ecCCcceEEEEECCCCcccCeEE
Confidence            335566778999998888 578899999999999886 6799999999875421   11223467899999999999999


Q ss_pred             EEEEEeCCc-----eEEEEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEE--
Q psy11701        196 GCNATNSLG-----YVYKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTI--  266 (745)
Q Consensus       196 ~C~~~~~~g-----~~~~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~--  266 (745)
                      +|.+.+..+     .....+.|.|..  .+|.+...+... +.+|++++|.|.+. .+.+.+.|++++..+.......  
T Consensus        90 ~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~  167 (316)
T 3vh8_G           90 TCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQI  167 (316)
T ss_dssp             EEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEE
T ss_pred             EEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeee
Confidence            999986422     233345666653  245666555554 88999999999994 4566899999987764322111  


Q ss_pred             ---eecCcEEEcccCCCCCEEEEEEEEeCCce-----EEEEEEEEEee---cceeecCCCcEEEecCCeEEEEEEEEecC
Q psy11701        267 ---LETGDLKITDVAFADSGEYTCFARNKLGT-----AQGSGSLTVKE---HTHITDQPEDYEVEAGQSATFRCNAVSDP  335 (745)
Q Consensus       267 ---~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~-----~~~~~~l~v~~---~p~~~~~p~~~~~~~g~~~~l~C~~~~~~  335 (745)
                         ...+.|.|.+++.+|+|.|+|.|.|..|.     .+....|.|..   +|.+...+.. .+..|+.++|.|.+.. +
T Consensus       168 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~-~v~~G~~v~L~C~~~~-~  245 (316)
T 3vh8_G          168 HDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP-KVQAGESVTLSCSSRS-S  245 (316)
T ss_dssp             ETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCS-CCCTTSCCEEEEEESS-C
T ss_pred             cCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCC-eecCCCcEEEEEECCC-C
Confidence               13457999999999999999999998763     14455666653   3444333332 4578999999999973 3


Q ss_pred             CCCcEEEEeeCCeeccCCCCCeEEEc--CCeEEEEecCCCCCCEEEEEEEEeCCce
Q psy11701        336 SLKLSIVWLRGSEPIDFESEPRFVQS--NDYSLTVTKSSELDSGQYTCRAQTELDF  389 (745)
Q Consensus       336 ~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~c~a~n~~g~  389 (745)
                      .  ..+.|++++..+...........  ....|.|..+.  |.|.|+|.+.|..+.
T Consensus       246 ~--~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          246 Y--DMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             C--SEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             C--cEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence            3  78999999876542110000001  12578888888  999999999997663

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.94  E-value=2.6e-26  Score=233.76  Aligned_cols=257  Identities=16%  Similarity=0.214  Sum_probs=174.0

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEec-----------------CCCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPI-----------------NPSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i-----------------~~~~~~~~~~----~~~~L~   90 (745)
                      .+..|....+.+|++++|.|.+.+.+  .+.+.|+|+  +..+                 ....|+.+..    ...+|.
T Consensus         3 ~l~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (344)
T 1za6_B            3 QLVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVE   82 (344)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred             eeeCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEE
Confidence            45567778899999999999998763  678999996  3322                 1134665532    235899


Q ss_pred             EccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCE
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASGL-PE-PEIHWVHNGK  164 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~  164 (745)
                      |.+++.+|+|.|+|.+.+..+.. ...+.|.|.    .+|.+...+....+.+|+.++|.|.+.|. |. +.+.|+++|.
T Consensus        83 I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~  161 (344)
T 1za6_B           83 LSSLRSEDTAVYFCTRSLNMAYW-GQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  161 (344)
T ss_dssp             ECSCCGGGCEEEEEEETTTTCEE-CCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTB
T ss_pred             ECCCCcccCEEEEEEEecCccee-cCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCc
Confidence            99999999999999998754322 234577776    35555554444457899999999999986 65 6999999997


Q ss_pred             eccCCCCC-----CceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE-----------------------Eee
Q psy11701        165 PISQAPPN-----PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN-----------------------VLA  216 (745)
Q Consensus       165 ~~~~~~~~-----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~-----------------------v~~  216 (745)
                      .+......     .......+.|.|.++..+| |.|+|.|.|..+.......+.                       ...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~  240 (344)
T 1za6_B          162 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQP  240 (344)
T ss_dssp             CTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CC
T ss_pred             cCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCC
Confidence            64211000     0111112479999998888 999999999887643332221                       122


Q ss_pred             cCCeeeeCCCceEEecCceEEEEEEEeec-C-CCeEEEeeCCEEccCce---EEEeecC------cEEEcccCCCCCEEE
Q psy11701        217 HAPEITEAPKDEYTVDGKTVVLTCRVFGA-P-KPEVNWIHNQKELTGGR---YTILETG------DLKITDVAFADSGEY  285 (745)
Q Consensus       217 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~---~~~~~~~------~l~i~~~~~~d~G~Y  285 (745)
                      .+|.+...+.......|..++|.|.+.+. | .+.+.|++++..+....   .....++      .|.|.....+|.|.|
T Consensus       241 ~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~Y  320 (344)
T 1za6_B          241 REPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVF  320 (344)
T ss_dssp             BCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEE
T ss_pred             cCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeE
Confidence            45665544333223346679999999985 4 35899999998765321   1112233      356666666789999


Q ss_pred             EEEEEeCCc
Q psy11701        286 TCFARNKLG  294 (745)
Q Consensus       286 ~C~~~n~~g  294 (745)
                      +|.|.|...
T Consensus       321 tC~a~~~~l  329 (344)
T 1za6_B          321 SCSVMHEAL  329 (344)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEcCCC
Confidence            999998754

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.93  E-value=1.7e-24  Score=203.75  Aligned_cols=183  Identities=28%  Similarity=0.480  Sum_probs=156.6

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecC-CCCCeEec--cCC-cEEEEccCCC-CCCEEEEEEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPIN-PSDRISQG--NYG-KSLIIKHVEF-SDQGSYTCEV  106 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~-~~~~~~~~--~~~-~~L~i~~~~~-~d~G~Y~C~~  106 (745)
                      .|+.+...|.+..+.+|++++|.|.+.|.|.+.+.|+|++..+. ...++...  ..+ ..|.|.+++. +|+|.|+|.+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            46677788999999999999999999999999999999999997 34555442  222 5899999999 9999999999


Q ss_pred             EeCCeeeEEEEEEEEEEec-------CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecC
Q psy11701        107 SNGVGEAKSYSIDLSVLAA-------PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP  179 (745)
Q Consensus       107 ~~~~g~~~~~~~~l~V~~~-------p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~  179 (745)
                      .+..|...+..+.|.|...       |.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  .+....+
T Consensus        85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~  162 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSN--PRYSLKD  162 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTS--TTEEEET
T ss_pred             EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCC--CeEEccC
Confidence            9988886667889999876       788888888889999999999999999999999999999887432  3445567


Q ss_pred             ceEEEccCCCCCCEEEEEEEEeCCceEEEE-EEEEEee
Q psy11701        180 NRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLA  216 (745)
Q Consensus       180 ~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~  216 (745)
                      +.|.|.++..+|+|.|+|.|.|..|..... +.|.|..
T Consensus       163 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          163 GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence            799999999999999999999999988765 7888764

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.93  E-value=6.5e-25  Score=209.57  Aligned_cols=186  Identities=24%  Similarity=0.414  Sum_probs=155.8

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .|+.+|.++.+.. .+.+++.|+|+++     ++.+.+|.|+|+...........  + ......++|.+|.+++.|.|+
T Consensus         4 ~p~~~P~~l~~~~-~~~~si~l~W~~p-----~g~i~~Y~v~~~~~~~~~~~~~~--~-~~~~~~~~i~~L~p~t~Y~~~   74 (234)
T 3f7q_A            4 MDLGAPQNPNAKA-AGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHL--L-DSKVPSVELTNLYPYCDYEMK   74 (234)
T ss_dssp             -CCCCCEEEEEEE-CSSSCEEEEEECC-----SSCCCEEEEEEEETTSCGGGCEE--E-EESSSEEEECSCCTTCEEEEE
T ss_pred             CCCCCCcceEEEE-cCCCEEEEEEECC-----CCccceEEEEEEECCCCccceEE--E-cCCccEEEECCCCCCCEEEEE
Confidence            5789999999988 8899999999985     46789999999877654333322  2 346778999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccC--Ccccccc
Q psy11701        480 VLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVG--PLLERLP  557 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~--~~~~~~~  557 (745)
                      |.|.|..|.|++|..+.++|.+.+|.+|.++++...+.++|.|+|++|.+.+|.|.+|.|+|+..+.....  .+..  .
T Consensus        75 V~A~n~~G~g~~s~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~--~  152 (234)
T 3f7q_A           75 VCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKK--V  152 (234)
T ss_dssp             EEEEETTEECCCCCCEEEECCCCCCCCCCCCEEEECSSSCEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBSSCCEE--C
T ss_pred             EEEEeCCCcCCCCCeEEEEcCCCCCCCCCccEEEEecCCEEEEEEcCCCCCCCceeEEEEEEEECCCCCCccCcceE--E
Confidence            99999999999999999999999999999999999999999999999988889999999999987654321  1211  1


Q ss_pred             cccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcce
Q psy11701        558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKY  596 (745)
Q Consensus       558 ~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~  596 (745)
                      .......+++.|.+|.|++.|.|+|.|.|..|.|++|..
T Consensus       153 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  191 (234)
T 3f7q_A          153 LVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA  191 (234)
T ss_dssp             CCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEE
T ss_pred             EecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCc
Confidence            122455679999999999999999999999999999874

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.93  E-value=1.3e-24  Score=201.67  Aligned_cols=180  Identities=24%  Similarity=0.371  Sum_probs=150.3

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCC--C--eEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--R--ISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~--~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      |+.+...+....+.+|++++|.|.+.|.|.+.+.|+|++..+....  +  +........|.|.+++.+|+|.|+|.+.+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN   84 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEc
Confidence            4556678889999999999999999999999999999999887653  3  33344456899999999999999999999


Q ss_pred             CCeeeEEEEEEEEEE---ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecC--ceEE
Q psy11701        109 GVGEAKSYSIDLSVL---AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP--NRIT  183 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~---~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~--~~L~  183 (745)
                      ..|... ..+.|.|.   .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+...... ......  ..|.
T Consensus        85 ~~~~~~-~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~L~  162 (194)
T 2a38_A           85 GSGQAT-STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDF-QISQEGDLYSLL  162 (194)
T ss_dssp             TTEEEE-EEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSE-EEEEETTEEEEE
T ss_pred             CCceEe-EEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcE-EEEEcCCEEEEE
Confidence            887765 56778887   6777888888889999999999999999999999999999988743221 111112  2799


Q ss_pred             EccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       184 i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      |.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus       163 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          163 IAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            9999999999999999999999888888776

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.93  E-value=1.2e-24  Score=201.16  Aligned_cols=182  Identities=19%  Similarity=0.314  Sum_probs=152.4

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecC-CCeeEEEE-CCEecCC-CCCeEec---cCCcEEEEccCCCCCCEEEEEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTP-LPQTIWSK-DGVPINP-SDRISQG---NYGKSLIIKHVEFSDQGSYTCEV  106 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p-~~~v~W~~-~~~~i~~-~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~  106 (745)
                      |..+...|.+..+.+|++++|.|.+.+.+ .+.+.|++ ++..+.. ..++...   .....|.|.+++.+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            66778899999999999999999998876 78999999 8888874 4555542   34568999999999999999999


Q ss_pred             EeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEcc
Q psy11701        107 SNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN  186 (745)
Q Consensus       107 ~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~  186 (745)
                      .+..+...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............++.|.|.+
T Consensus        82 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~  161 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG  161 (191)
T ss_dssp             EETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETT
T ss_pred             EcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECC
Confidence            99886566688999999999999999999999999999999999999999999999999875433333344567899999


Q ss_pred             CCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        187 LRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      +..+|+|.|+|.|.|..+.......+.|
T Consensus       162 ~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          162 IKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             CCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            9999999999999998865555444443

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.93  E-value=6.8e-25  Score=205.02  Aligned_cols=195  Identities=25%  Similarity=0.397  Sum_probs=148.2

Q ss_pred             CCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCC-cccCCcccccccccCCCcceeeecCCCCCccEE
Q psy11701        501 EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKG-TKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR  579 (745)
Q Consensus       501 ~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~  579 (745)
                      .++|++|.++++.. +.+++.|+|++|.+.+++|.+|.|+|+.... ..|....   ..+ ......+.+ +|.|++.|+
T Consensus         3 ~~~P~~P~~~~~~~-~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~~---~~~-~~~~~~~~~-~L~p~t~Y~   76 (205)
T 1cfb_A            3 QDVPNAPKLTGITC-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAY---EKV-PNTDSSFVV-QMSPWANYT   76 (205)
T ss_dssp             CCCCCCCEEEEEEE-CSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEE---EEE-ETTCSEEEE-ECCSSEEEE
T ss_pred             ccCCCCCCCcEEEe-cCCEEEEEEECcccCCCceEEEEEEEecCCCCCCceeee---ecc-CCCceEEEE-eCCCCCEEE
Confidence            57899999999999 9999999999998888899999999987543 2221111   112 345567777 999999999


Q ss_pred             EEEEEEecCCCCCCc-ceeeecccC-C----CCCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCcc
Q psy11701        580 IHLAGYTKAGDGAES-KYLFYVPFK-N----PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQD  653 (745)
Q Consensus       580 ~~V~a~n~~G~g~~S-~~~~~~~~~-~----~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~  653 (745)
                      |+|.|.|..|.|.+| ......+.. .    +.++.+....+++|.|+|+++.....||.|.+|.|.|+..+....+   
T Consensus        77 ~~V~A~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~---  153 (205)
T 1cfb_A           77 FRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAW---  153 (205)
T ss_dssp             EEEEEEETTEECCCCCCCCCEEECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCC---
T ss_pred             EEEEEEECCccCCCCCCceeEEcCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCCCc---
Confidence            999999999999998 333333222 1    2233334456789999999988778899999999999876332211   


Q ss_pred             CccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCC-CCc
Q psy11701        654 DVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGP-PSE  732 (745)
Q Consensus       654 ~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~-~s~  732 (745)
                                                            ....+.....+++.|.+|.|++.|.|+|+|.|.+|.|+ .|+
T Consensus       154 --------------------------------------~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~  195 (205)
T 1cfb_A          154 --------------------------------------ENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAE  195 (205)
T ss_dssp             --------------------------------------EEEEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCC
T ss_pred             --------------------------------------EEEEecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCC
Confidence                                                  11111133678899999999999999999999999999 479


Q ss_pred             ceEEeCCCCC
Q psy11701        733 IISFVTPEGG  742 (745)
Q Consensus       733 ~~~~~t~~~~  742 (745)
                      ++.++|.|++
T Consensus       196 ~v~~~T~e~v  205 (205)
T 1cfb_A          196 EVVGYSGEDR  205 (205)
T ss_dssp             CEEEESSSCC
T ss_pred             cEEEecCCCC
Confidence            9999998864

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.93  E-value=1.5e-24  Score=201.23  Aligned_cols=176  Identities=24%  Similarity=0.424  Sum_probs=151.5

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEe-ecCCCeeEEEECCEecCCCC--CeEe--ccC-------CcEEEEccCCCCCCE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPINPSD--RISQ--GNY-------GKSLIIKHVEFSDQG  100 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~i~~~~--~~~~--~~~-------~~~L~i~~~~~~d~G  100 (745)
                      |..|+..|++..+.+|++++|.|.+. |.|.+.+.|+|+|..|....  ++.+  ...       .++|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            55677899999999999999999998 99999999999999998652  3332  222       358999999999999


Q ss_pred             EEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecC
Q psy11701        101 SYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGP  179 (745)
Q Consensus       101 ~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~  179 (745)
                      .|+|.+.+..|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+......    ...
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~----~~~  157 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----GPQ  157 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----SCC
T ss_pred             EEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----CCC
Confidence            9999999988877666689999999999999998999999999999999999999 99999999988754322    456


Q ss_pred             ceEEEccCCCCCCEEEEEEEEeCCceEE-EEEEEEE
Q psy11701        180 NRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNV  214 (745)
Q Consensus       180 ~~L~i~~v~~~d~G~Y~C~~~~~~g~~~-~~~~l~v  214 (745)
                      +.|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       158 ~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          158 RSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            789999987  79999999999999886 5778877

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.93  E-value=7.2e-25  Score=202.96  Aligned_cols=182  Identities=27%  Similarity=0.452  Sum_probs=156.0

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC-CCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP-SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      |+.+...+....+.+|++++|.|.+.|.|.+.+.|+|++..+.. ..++.+...+..|.|.+++.+|+|.|+|.+.+..|
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   86 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVG   86 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCC
Confidence            34566777888999999999999999999999999999999875 46677777777899999999999999999999888


Q ss_pred             eeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCC
Q psy11701        112 EAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSD  191 (745)
Q Consensus       112 ~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d  191 (745)
                      ...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ......++.|.|.++..+|
T Consensus        87 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d  164 (192)
T 2iep_A           87 GAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS--RIAVLESGSLRIHNVQKED  164 (192)
T ss_dssp             CCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCS--SEEECTTSCEEESSCCGGG
T ss_pred             ceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCC--cEEEecCCcEEEecCChhh
Confidence            76667788999999999988888899999999999999999999999999999887432  1223356689999999999


Q ss_pred             CEEEEEEEEeCCceEEE-EEEEEEee
Q psy11701        192 TGNYGCNATNSLGYVYK-DVYVNVLA  216 (745)
Q Consensus       192 ~G~Y~C~~~~~~g~~~~-~~~l~v~~  216 (745)
                      +|.|+|.|.|..|.... .+.|.|..
T Consensus       165 ~G~Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          165 AGQYRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence            99999999999988743 46777653

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.93  E-value=3.6e-24  Score=197.68  Aligned_cols=178  Identities=25%  Similarity=0.365  Sum_probs=146.3

Q ss_pred             CCCCeeEeeccceeEec-CCcEEEEEEEeecCC--CeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEE
Q psy11701         31 HAPKQQYVTRKKEVALR-NKKVELFCIFGGTPL--PQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~-G~~~~l~C~~~g~p~--~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      .+|.+. . +....+.+ |++++|.|.+.+.|.  +.+.|+|++..+.......   .+..|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~P~i~-~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~   76 (190)
T 2wv3_A            2 NEPRIV-T-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA---SNMEYRINKPRAEDSGEYHCVYH   76 (190)
T ss_dssp             -CCEEE-E-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC---SEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCccc-c-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe---ccEEEEEecCCcccCEEEEEEEE
Confidence            345443 3 55666777 999999999998887  7999999999987543332   45689999999999999999999


Q ss_pred             eCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe--CCEeccCCCCCCceeec----Cce
Q psy11701        108 NGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH--NGKPISQAPPNPRRKVG----PNR  181 (745)
Q Consensus       108 ~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~--~g~~~~~~~~~~~~~~~----~~~  181 (745)
                      +. +.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++  +|..+.......++...    .+.
T Consensus        77 n~-~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~  154 (190)
T 2wv3_A           77 FV-SAP-KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE  154 (190)
T ss_dssp             ET-TEE-EEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEE
T ss_pred             eC-Ccc-cccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeE
Confidence            98 544 47789999999999988988899999999999999999999999999  88877644333343332    237


Q ss_pred             EEEccCC-CCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        182 ITIENLR-KSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       182 L~i~~v~-~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      |.|.++. .+|+|.|+|.|.|..|.....+.|.|.
T Consensus       155 L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          155 LNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            9999999 799999999999999998888888774

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.93  E-value=4e-24  Score=201.11  Aligned_cols=182  Identities=30%  Similarity=0.488  Sum_probs=147.1

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe--c-cCCcEEEEccC-CCCCCEEEEEEEEe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ--G-NYGKSLIIKHV-EFSDQGSYTCEVSN  108 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~--~-~~~~~L~i~~~-~~~d~G~Y~C~~~~  108 (745)
                      |+.+...|.+..+.+|++++|.|.+.|.|.+.+.|+|++..+........  . ..+..|.|.++ +.+|+|.|+|.+.+
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n   85 (212)
T 2yd6_A            6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN   85 (212)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEE
T ss_pred             CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEc
Confidence            55566788899999999999999999999999999999999975433222  1 23457999999 59999999999999


Q ss_pred             CCeeeEEEEEEEEEEec-------CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee----
Q psy11701        109 GVGEAKSYSIDLSVLAA-------PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----  177 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~~-------p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~----  177 (745)
                      ..|... ..+.|.|...       |.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.......+...    
T Consensus        86 ~~g~~~-~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~  164 (212)
T 2yd6_A           86 NVGEIS-VSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSE  164 (212)
T ss_dssp             TTEEEE-EEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEET
T ss_pred             CCCcEE-EEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecC
Confidence            988754 6788888764       6777788888899999999999999999999999999999876533333322    


Q ss_pred             cCceEEEccCCCCCCEEEEEEEEeCCceEEEE-EEEEEe
Q psy11701        178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVL  215 (745)
Q Consensus       178 ~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~  215 (745)
                      ..+.|.|.++..+|+|.|+|.|.|..|..... +.|.+.
T Consensus       165 ~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          165 SIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            23789999999999999999999999987654 666665

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.93  E-value=1.3e-24  Score=204.23  Aligned_cols=195  Identities=16%  Similarity=0.206  Sum_probs=158.8

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCC--CCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCccee
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSP--QSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNF  477 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~--~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~  477 (745)
                      .|+.+|.++.+.. .+.+++.|+|+++..  ...++.+.+|.|+|+...........  . ......++|.+|.|++.|.
T Consensus         3 ~P~~~P~~l~~~~-~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~--~-~~~~~~~~i~~L~p~t~Y~   78 (211)
T 3p4l_A            3 LPMMPPVGVQASI-LSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN--A-NATTLSYLVTGLKPNTLYE   78 (211)
T ss_dssp             CCCCCCEEEEEEE-CSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEE--E-EESSSEEEECSCCTTCEEE
T ss_pred             CCCCCCCCEEEEe-cCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEE--e-CCCceEEEecCcCCCCEEE
Confidence            5788999999987 889999999998542  33467899999999876554333332  2 4467789999999999999


Q ss_pred             EEEEEecCCCCCCCCcceEEeCCCCCCC-CCCceeEEEc--CCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCccc
Q psy11701        478 ARVLAFNGAYNGPPSEIISFVTPEGVPG-TVQSLEAIPL--GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLE  554 (745)
Q Consensus       478 ~~V~a~n~~G~g~~S~~~~~~t~~~~P~-~p~~~~~~~~--~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~  554 (745)
                      |+|.|.|..|.|++|..+.++|.+..|. +|.++++...  +.++|.|+|++|.+.+|.|.+|.|+|+..+......+..
T Consensus        79 ~~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~  158 (211)
T 3p4l_A           79 FSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVI  158 (211)
T ss_dssp             EEEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCCSCCCEEEEEEESCTTSCGGGSEE
T ss_pred             EEEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCceEE
Confidence            9999999999999999999999998887 8889998887  478999999999888899999999999765543332221


Q ss_pred             ccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        555 RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       555 ~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      .   ...+..+++.|.+|.|++.|.|+|.|.|..|.|++|+.+.+..
T Consensus       159 ~---~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~  202 (211)
T 3p4l_A          159 E---PVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT  202 (211)
T ss_dssp             E---EEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEEC
T ss_pred             E---EecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccC
Confidence            1   1145678999999999999999999999999999998876553

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=1.2e-24  Score=199.37  Aligned_cols=174  Identities=26%  Similarity=0.429  Sum_probs=145.6

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccC----CcEEEEccCCCCCCEEEEEEEEe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      ++.+...|.+..+.+|++++|.|.+.|.|.+.+.|+|++..+....+......    ...|.|.+++.+|+|.|+|.+.+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            44567788899999999999999999999999999999999987655443322    25899999999999999999998


Q ss_pred             CCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecCceEEEccC
Q psy11701        109 GVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENL  187 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v  187 (745)
                      ..+...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+....      .....|.|.++
T Consensus        82 ~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~------~~~~~L~i~~~  155 (182)
T 1rhf_A           82 GGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA------PSPSVLNVTGV  155 (182)
T ss_dssp             CTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE------ESSEEEEECCC
T ss_pred             CCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCC------CCceEEEEecc
Confidence            87766667789999999999999999999999999999999999999 999999999886321      25678999988


Q ss_pred             CCCCCEEEEEEEEeCCceEEE-EEEEEE
Q psy11701        188 RKSDTGNYGCNATNSLGYVYK-DVYVNV  214 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g~~~~-~~~l~v  214 (745)
                        +|+|.|+|.|.|..|.... .+.|.|
T Consensus       156 --~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          156 --TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             --SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             --ccCeEEEEEEECCCCCcccceEEEEe
Confidence              5899999999999998754 566655

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.92  E-value=7.8e-24  Score=196.83  Aligned_cols=182  Identities=21%  Similarity=0.272  Sum_probs=149.0

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEecc-CC--cEEEEccCCCCCCEEEEEEEEe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGN-YG--KSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~-~~--~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      |+.+...+.+..+.+|++++|.|.+.|.|.+.+.|+|++..+... .++.... .+  ..|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   83 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN   83 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEE
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEE
Confidence            556678889999999999999999999999999999999998754 3444432 22  3899999999999999999999


Q ss_pred             CCeeeEEEEEEEEEEecCeEEec-----CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-ecCceE
Q psy11701        109 GVGEAKSYSIDLSVLAAPYFTVE-----PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRI  182 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~~p~~~~~-----~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L  182 (745)
                      ..|... ..+.|.|..+|.+...     +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......... ...+.|
T Consensus        84 ~~g~~~-~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L  162 (197)
T 2j8h_A           84 QGGSVS-GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL  162 (197)
T ss_dssp             TTEEEE-EEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEE
T ss_pred             CCCcee-EEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEE
Confidence            887754 7788888887765432     355678899999999999999999999999999887433221111 134689


Q ss_pred             EEcc-CCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        183 TIEN-LRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       183 ~i~~-v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      .|.+ +..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       163 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             ECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            9999 99999999999999999998888888875

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.92  E-value=8e-25  Score=231.55  Aligned_cols=272  Identities=18%  Similarity=0.287  Sum_probs=178.7

Q ss_pred             eceEEEEEEecccCCcccCCCCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCC--CCCeEec---c
Q psy11701         12 GNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINP--SDRISQG---N   84 (745)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~--~~~~~~~---~   84 (745)
                      +....|.|...      ...+|.++...+.. .+.+|+.++|.|.+.|. |.+ .|.|+|++..+..  .......   .
T Consensus       109 ~~~~~l~V~~~------~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~  181 (444)
T 1igt_B          109 GQGTTVTVSSA------KTTAPSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYT  181 (444)
T ss_dssp             BCCEEEEECSC------CCBCCEEEEECCCS-SCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEE
T ss_pred             cCcEEEEecCC------CCCCCceeEecccc-cCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEE
Confidence            34456666521      12345555444443 45899999999999885 776 9999999876421  1111110   0


Q ss_pred             CCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEE------------------EecCeEEec-CceeE-eeCCCeEE
Q psy11701         85 YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV------------------LAAPYFTVE-PEFIN-AAEEETVT  144 (745)
Q Consensus        85 ~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V------------------~~~p~~~~~-~~~~~-v~~G~~~~  144 (745)
                      ..+.|.|.+++.+| |.|+|.|.+..+... ....+.+                  ..+|.+... |.... +.+|++++
T Consensus       182 ~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~  259 (444)
T 1igt_B          182 LSSSVTVTSSTWPS-QSITCNVAHPASSTK-VDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPI  259 (444)
T ss_dssp             EEEEEEECSTTTTT-SCCEEEEEETTTTEE-EEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCE
T ss_pred             EEEEEEEchhhcCC-CeEEEEEEeCCCCcc-eEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcE
Confidence            12469999999999 999999999877643 2223322                  125555333 33333 58999999


Q ss_pred             EEEEEeecC----CCeEEEEeCCEeccCCCCCCcee------ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        145 FECKASGLP----EPEIHWVHNGKPISQAPPNPRRK------VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       145 l~C~~~~~p----~~~v~W~~~g~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      |.|.+.|.+    .+.++|+|+|..+..........      ...+.|.|.++..+|+|.|+|.|.|..+.......+.+
T Consensus       260 L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~  339 (444)
T 1igt_B          260 VTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISK  339 (444)
T ss_dssp             EEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             EEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEec
Confidence            999999873    36999999998876433221111      12357999999999999999999998876532333321


Q ss_pred             ---eecCCeeeeCCCce-EEecCceEEEEEEEeec-CCC-eEEEeeCCEEccCceE---EEeecC------cEEEcccCC
Q psy11701        215 ---LAHAPEITEAPKDE-YTVDGKTVVLTCRVFGA-PKP-EVNWIHNQKELTGGRY---TILETG------DLKITDVAF  279 (745)
Q Consensus       215 ---~~~~p~~~~~~~~~-~v~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~---~~~~~~------~l~i~~~~~  279 (745)
                         ...+|.+...+... .+..| .++|.|.+.+. |.+ .+.|++++..+.....   ....++      .|.|.....
T Consensus       340 ~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~  418 (444)
T 1igt_B          340 PKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNW  418 (444)
T ss_dssp             CCCCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHH
T ss_pred             cCCCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHh
Confidence               22467665444332 33344 59999999984 555 8999999988743211   112333      355666666


Q ss_pred             CCCEEEEEEEEeCC
Q psy11701        280 ADSGEYTCFARNKL  293 (745)
Q Consensus       280 ~d~G~Y~C~~~n~~  293 (745)
                      +|.|.|+|.|.|..
T Consensus       419 ~d~g~YtC~a~n~~  432 (444)
T 1igt_B          419 VERNSYSCSVVHEG  432 (444)
T ss_dssp             HTCCCEEEEEECTT
T ss_pred             cCCCeEEEEEECCC
Confidence            77999999999875

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.92  E-value=1.9e-23  Score=194.35  Aligned_cols=183  Identities=23%  Similarity=0.363  Sum_probs=151.0

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCc--EEEEccCCCCCCEEEEEEEEeC
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .|+.+...+.+..+.+|++++|.|.+.+.|.+.+.|+|++..+....++.....+.  +|.|.+++.+|+|.|+|.+.+.
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   85 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNE   85 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECS
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECC
Confidence            34556788889999999999999999999999999999999998777776654443  8999999999999999999988


Q ss_pred             CeeeEEEEEEEEEEecCeEEec---CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec--CceEEE
Q psy11701        110 VGEAKSYSIDLSVLAAPYFTVE---PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG--PNRITI  184 (745)
Q Consensus       110 ~g~~~~~~~~l~V~~~p~~~~~---~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~~L~i  184 (745)
                      .|... ..+.|.|..+|.+...   +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... .....  ...|.|
T Consensus        86 ~~~~~-~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~-~~~~~~~~~~L~i  163 (197)
T 3lcy_A           86 VGEVE-TSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENI-TIENTEHYTHLVM  163 (197)
T ss_dssp             SCEEE-EEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSE-EEEECSSEEEEEE
T ss_pred             CCcee-EEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCce-EEEEcCCEEEEEE
Confidence            77655 6678888887766533   35567889999999999999999999999999998743221 11111  268999


Q ss_pred             ccCCC-CCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        185 ENLRK-SDTGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       185 ~~v~~-~d~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      .++.. +|+|.|+|.|.|..|.....+.|.|..
T Consensus       164 ~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          164 KNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             SSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            99995 899999999999999998888888763

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.92  E-value=6.5e-24  Score=199.00  Aligned_cols=193  Identities=14%  Similarity=0.195  Sum_probs=153.4

Q ss_pred             EEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcce-eeeeEEEEEEeccCCCCceeEEEEc---cCceeEEEecccc
Q psy11701        396 LTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEGSIRELIVN---KGESTTTEVDKFV  471 (745)
Q Consensus       396 l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~-~i~~y~i~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~  471 (745)
                      +....+|.+|.++.+.. .+. ++.|+|+++.  ..+| ++.+|.|+|+......  +......   ......+++.+|.
T Consensus         3 l~~~~~P~~P~~~~~~~-~~~-s~~l~W~~p~--~~~g~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~L~   76 (209)
T 2vkw_A            3 LAQADTPSSPSIDQVEP-YSS-TAQVQFDEPE--ATGGVPILKYKAEWRAVGEEV--WHSKWYDAKEASMEGIVTIVGLK   76 (209)
T ss_dssp             --CCCCCCCCEEEEEEE-CSS-CEEEEEECCS--CCCSSCCCEEEEEEEESSCCC--CEEEEEEHHHHHHHSEEEECCCC
T ss_pred             ccccCCCcCCcccEeee-ccC-eEEEEEcCCC--cCCCcceeEEEEEEeeCCCCC--ceEeEeeccCCCccceEEeCCCC
Confidence            45567889999999876 555 6899999852  2344 4999999998765433  3223220   1235689999999


Q ss_pred             cCcceeEEEEEecCCCCCCCCcceEEeCCCC-CCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccC
Q psy11701        472 PASKNFARVLAFNGAYNGPPSEIISFVTPEG-VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVG  550 (745)
Q Consensus       472 ~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~-~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~  550 (745)
                      |++.|.|+|.|.|..|.|.+|..+.++|... +|++|.++.+...+.++|.|+|++|.+.+++|.+|.|+|+. ....+.
T Consensus        77 p~t~Y~~~V~A~n~~G~~~~s~~~~~~T~~~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~-~~~~~~  155 (209)
T 2vkw_A           77 PETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRA-LSSEWK  155 (209)
T ss_dssp             TTCEEEEEEEEEETTEECCCCCCEEEECCCSCSCCCCEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEEEE-TTSCCC
T ss_pred             CCCeEEEEEEEEcCCcccCCcccccccccCCCCCCCCcccccccccCCeEEEEEECcccCCCCCceEEEEEEC-CCCCCc
Confidence            9999999999999999999999888888776 89999999988899999999999997788999999999998 333333


Q ss_pred             CcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        551 PLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      ....    + .....++.|.+|.|++.|.|+|.|.|..|.|++|......
T Consensus       156 ~~~~----~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~  200 (209)
T 2vkw_A          156 PEIR----L-PSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRT  200 (209)
T ss_dssp             CCEE----E-CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEEC
T ss_pred             eeee----c-CCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchhhhhh
Confidence            2221    2 4566899999999999999999999999999998776544

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.92  E-value=2.9e-23  Score=191.57  Aligned_cols=181  Identities=28%  Similarity=0.429  Sum_probs=144.8

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC--CCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP--SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      |+.+...+....+.+|++++|.|.+.+.|.+.+.|++++..+..  ..++.... +++|.|.+++.+|+|.|+|.+.+..
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-NNNLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT-TSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec-CCCEEEeeCCHhHCcEEEEEEEEcC
Confidence            45567888889999999999999999999999999999988763  45555544 4479999999999999999999876


Q ss_pred             -eeeEEEEEEEEEEecCeEEecCc--eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccC
Q psy11701        111 -GEAKSYSIDLSVLAAPYFTVEPE--FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENL  187 (745)
Q Consensus       111 -g~~~~~~~~l~V~~~p~~~~~~~--~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v  187 (745)
                       +......+.|.|..+|.+...+.  ...+.+|+.+.|.|.+.+.|.+.+.|+++|..+..... .......+.|.|.++
T Consensus        81 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~-~~~~~~~~~L~i~~~  159 (189)
T 2v5t_A           81 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK-YILKGSNTELTVRNI  159 (189)
T ss_dssp             TTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSS-EEEETTTTEEEECSC
T ss_pred             CCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCc-EEEecCCCEEEEcCC
Confidence             44445667888888888776654  45678999999999999999999999999998874321 112234578999999


Q ss_pred             CCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        188 RKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      ..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       160 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          160 INSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            9999999999999999998888888775

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.92  E-value=1.3e-23  Score=196.37  Aligned_cols=192  Identities=19%  Similarity=0.181  Sum_probs=151.4

Q ss_pred             EeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccC-CCCceeEEEEccCceeEEEecccccCcce
Q psy11701        398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKD-GEGSIRELIVNKGESTTTEVDKFVPASKN  476 (745)
Q Consensus       398 v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y  476 (745)
                      |+.+|.+|.++.+..  +.+++.|+|+++  .+.++.+.+|.|+|+.... +.+......+ ......+.+ +|.|++.|
T Consensus         2 v~~~P~~P~~~~~~~--~~~sv~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~-~~~~~~~~~-~L~p~t~Y   75 (205)
T 1cfb_A            2 VQDVPNAPKLTGITC--QADKAEIHWEQQ--GDNRSPILHYTIQFNTSFTPASWDAAYEKV-PNTDSSFVV-QMSPWANY   75 (205)
T ss_dssp             CCCCCCCCEEEEEEE--CSSEEEEEEECC--CCTTSCCCEEEEEEEESSSTTCCEEEEEEE-ETTCSEEEE-ECCSSEEE
T ss_pred             cccCCCCCCCcEEEe--cCCEEEEEEECc--ccCCCceEEEEEEEecCCCCCCceeeeecc-CCCceEEEE-eCCCCCEE
Confidence            456889999999876  889999999985  3556889999999976543 2221122233 345567777 99999999


Q ss_pred             eEEEEEecCCCCCCCC-cceEEeCCCCCCC-CCCceeEEEcCCceEEEEeeCCC--CCCCceeeEEEEEEEcCCcccCCc
Q psy11701        477 FARVLAFNGAYNGPPS-EIISFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPE--QPNGVLMGYKIKYQSVKGTKVGPL  552 (745)
Q Consensus       477 ~~~V~a~n~~G~g~~S-~~~~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~--~~~g~i~~Y~v~~~~~~~~~~~~~  552 (745)
                      .|+|.|.|..|.|.+| ....++|.+.+|. +|.++++...+.++|.|+|++|.  +.+|.|.+|.|+|+..+...  .+
T Consensus        76 ~~~V~A~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~--~~  153 (205)
T 1cfb_A           76 TFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAA--AW  153 (205)
T ss_dssp             EEEEEEEETTEECCCCCCCCCEEECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTC--CC
T ss_pred             EEEEEEEECCccCCCCCCceeEEcCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCC--Cc
Confidence            9999999999999998 5678888887774 78899999999999999999998  68899999999999876542  12


Q ss_pred             ccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC-cceeee
Q psy11701        553 LERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE-SKYLFY  599 (745)
Q Consensus       553 ~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~-S~~~~~  599 (745)
                      ....  +......++.|.+|.|++.|.|+|.|+|..|.|++ |..+..
T Consensus       154 ~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~  199 (205)
T 1cfb_A          154 ENNN--IFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVG  199 (205)
T ss_dssp             EEEE--ECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEE
T ss_pred             EEEE--ecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEE
Confidence            1111  22446789999999999999999999999999995 555433

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.91  E-value=9.1e-24  Score=196.36  Aligned_cols=172  Identities=16%  Similarity=0.193  Sum_probs=134.8

Q ss_pred             eeccceeEecCCcEEEEEEEe-ecCCCeeEEEECCEecCCCCCeEeccC----CcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         38 VTRKKEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPINPSDRISQGNY----GKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~i~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      ..+.+..+.+|+.+.|.|.+. +.|.|+|+|+|||++|..+.++.+...    ..+|.|.+++.+|+|.|+|.|.|..  
T Consensus         7 ~~~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~--   84 (207)
T 3rbs_A            7 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK--   84 (207)
T ss_dssp             CEEEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETT--
T ss_pred             ecCCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCC--
Confidence            445578999999999999995 479999999999999987766544322    2379999999999999999999933  


Q ss_pred             eEEEEEEEEEE---------------------ecCeEEecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeCCEeccCCC
Q psy11701        113 AKSYSIDLSVL---------------------AAPYFTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAP  170 (745)
Q Consensus       113 ~~~~~~~l~V~---------------------~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~~~~  170 (745)
                      .. ....+.+.                     .+|.|...+ ...+.+|+++.|.|.+.|. |.+.++|+|||..+....
T Consensus        85 a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~  162 (207)
T 3rbs_A           85 AT-NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE  162 (207)
T ss_dssp             EE-EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCC
T ss_pred             eE-EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCC
Confidence            33 22232211                     257776555 4778999999999999998 899999999999997533


Q ss_pred             CCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        171 PNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       171 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      .. ....+...|.|.+++.+|+|.|+|.|.|..|.....+.|..
T Consensus       163 ~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          163 KH-DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             CC-CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             ce-EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            21 11223347999999999999999999999999988887764

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.91  E-value=8.2e-24  Score=198.66  Aligned_cols=192  Identities=18%  Similarity=0.218  Sum_probs=143.2

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCC----CCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCcc
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQP----NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK  577 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~  577 (745)
                      .+|.+|.++++...+.+++.|+|++|...    ++.+.+|.|+|+..+...+....     . .....++.|.+|.|++.
T Consensus         3 ~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~-----~-~~~~~~~~i~~L~p~t~   76 (211)
T 3p4l_A            3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN-----A-NATTLSYLVTGLKPNTL   76 (211)
T ss_dssp             CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEE-----E-EESSSEEEECSCCTTCE
T ss_pred             CCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEE-----e-CCCceEEEecCcCCCCE
Confidence            45678999999999999999999998633    67899999999986654322211     1 45668999999999999


Q ss_pred             EEEEEEEEecCCCCCCcceeeecccCCCCC-----CCCCCC--CCcceeEEEeecCccccCCCcceEEEEEeccCCCCCC
Q psy11701        578 YRIHLAGYTKAGDGAESKYLFYVPFKNPDN-----VEGRGS--TPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAW  650 (745)
Q Consensus       578 Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~-----~~~~~~--~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~  650 (745)
                      |.|+|.|.|..|.|++|..+...+....+.     +.+...  .++++.|+|+++.  ..+|.|.+|.|.|+........
T Consensus        77 Y~~~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~--~~~g~i~~Y~v~~~~~~~~~~~  154 (211)
T 3p4l_A           77 YEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPS--EANGKITGYIIYYSTDVNAEIH  154 (211)
T ss_dssp             EEEEEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCT--TCCSCCCEEEEEEESCTTSCGG
T ss_pred             EEEEEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCC--CCCCCEEEEEEEEEECCCCCCC
Confidence            999999999999999987765554332221     111112  3678999999764  4778999999999855222100


Q ss_pred             CccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCC
Q psy11701        651 NQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPP  730 (745)
Q Consensus       651 ~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~  730 (745)
                                            .                  .......++.+++.|.+|.|++.|.|+|+|.|.+|.|++
T Consensus       155 ----------------------~------------------~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  194 (211)
T 3p4l_A          155 ----------------------D------------------WVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPM  194 (211)
T ss_dssp             ----------------------G------------------SEEEEEESSCSEEEECCCCTTCEEEEEEEEEETTEECCC
T ss_pred             ----------------------c------------------eEEEEecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCC
Confidence                                  0                  011122567889999999999999999999999999999


Q ss_pred             CcceEEeCCCC
Q psy11701        731 SEIISFVTPEG  741 (745)
Q Consensus       731 s~~~~~~t~~~  741 (745)
                      |+++.|+|.+.
T Consensus       195 S~~v~~~~~~~  205 (211)
T 3p4l_A          195 SEAVQFRTPKA  205 (211)
T ss_dssp             CCCEEEECC--
T ss_pred             CCCEEccCccc
Confidence            99999999764

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.91  E-value=2.6e-23  Score=221.64  Aligned_cols=274  Identities=18%  Similarity=0.284  Sum_probs=179.3

Q ss_pred             eceEEEEEEecccCCcccCCCCCeeEeeccceeEecCCcEEEEEEEeec-CC-C-eeEEEECCEecCCCC-CeEe-ccC-
Q psy11701         12 GNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGT-PL-P-QTIWSKDGVPINPSD-RISQ-GNY-   85 (745)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-~-~v~W~~~~~~i~~~~-~~~~-~~~-   85 (745)
                      +....|.|...      ...+|.++...+..  +.+|+.++|.|.+.|. |. + .|.|++++..+.... .... ... 
T Consensus       113 ~~~~~l~V~~~------~~~~P~i~~~~~~~--~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g  184 (475)
T 1iga_A          113 GQGTLVTVSSA------SPTSPKVFPLSLCS--TQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGD  184 (475)
T ss_pred             cCceEEEeccC------CCcCCeEEecCccc--cCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCC
Confidence            44566777621      12345555443333  3799999999999887 65 5 999999885432110 0001 011 


Q ss_pred             ----CcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE------------------ecCeE-EecCceeEeeCCCe
Q psy11701         86 ----GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL------------------AAPYF-TVEPEFINAAEEET  142 (745)
Q Consensus        86 ----~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~------------------~~p~~-~~~~~~~~v~~G~~  142 (745)
                          .+.|.|..+..+|.|.|+|.|.+..+...+..+.|.|.                  .+|.+ ...|....+.+|++
T Consensus       185 ~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~  264 (475)
T 1iga_A          185 LYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSE  264 (475)
T ss_pred             cEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCc
Confidence                13588999999999999999999876444444444331                  24444 33344444689999


Q ss_pred             EEEEEEEeecCC---CeEEEEeCCEeccCCCCCCce------eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        143 VTFECKASGLPE---PEIHWVHNGKPISQAPPNPRR------KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN  213 (745)
Q Consensus       143 ~~l~C~~~~~p~---~~v~W~~~g~~~~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~  213 (745)
                      +.|.|.+.|.++   +.+.|  ++..+.........      ....+.|.|.++..+|+|.|+|.|.|..+.......|.
T Consensus       265 v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~  342 (475)
T 1iga_A          265 ANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLS  342 (475)
T ss_pred             eEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEee
Confidence            999999998644   59999  44433321111111      11345799999999999999999999988754444443


Q ss_pred             E--eecCCeeeeCCCc-eEEecCceEEEEEEEeec-C-CCeEEEeeCCEEccCceEE-----Ee---ecC------cEEE
Q psy11701        214 V--LAHAPEITEAPKD-EYTVDGKTVVLTCRVFGA-P-KPEVNWIHNQKELTGGRYT-----IL---ETG------DLKI  274 (745)
Q Consensus       214 v--~~~~p~~~~~~~~-~~v~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~-----~~---~~~------~l~i  274 (745)
                      +  ...+|.+...+.. ..+..|+.++|.|.+.+. | .+.|.|+++|..+....+.     ..   .++      .|.|
T Consensus       343 ~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i  422 (475)
T 1iga_A          343 KSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRV  422 (475)
T ss_pred             cCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEE
Confidence            2  2346666544433 346789999999999986 3 3489999999887654211     11   222      4677


Q ss_pred             cccCCCCCEEEEEEEEeCCce
Q psy11701        275 TDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       275 ~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      .....+|.|.|+|.|.|....
T Consensus       423 ~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          423 AAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             ChHHhcCCCEEEEEEEcCCCC
Confidence            777778899999999987543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.91  E-value=7.4e-23  Score=189.70  Aligned_cols=182  Identities=30%  Similarity=0.469  Sum_probs=152.7

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCC-Cceee--cCceEEEccCCCCCCEEEEEEEE
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN-PRRKV--GPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~-~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      .+|.|...+....+.+|+++.|.|.+.+.|.+.+.|+++|..+...... .....  ....|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            4678888888999999999999999999999999999999988754321 12222  23589999999999999999999


Q ss_pred             eCCceEEEEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC-ceEEEeecC---cEEE
Q psy11701        201 NSLGYVYKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG-GRYTILETG---DLKI  274 (745)
Q Consensus       201 ~~~g~~~~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~---~l~i  274 (745)
                      |..|.....+.|.|..  .+|.+...+....+..|+.++|.|.+.+.|.+.+.|++++..+.. .++....++   .|.|
T Consensus        84 n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i  163 (194)
T 2a38_A           84 NGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLI  163 (194)
T ss_dssp             ETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEE
T ss_pred             cCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEE
Confidence            9999888877787763  467778888888899999999999999999999999999998853 344444444   6999


Q ss_pred             cccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVK  305 (745)
Q Consensus       275 ~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~  305 (745)
                      .++...|.|.|+|.|.|..|.....+.|.|+
T Consensus       164 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          164 AEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            9999999999999999999998888888763

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.91  E-value=3.3e-23  Score=191.75  Aligned_cols=185  Identities=35%  Similarity=0.563  Sum_probs=152.5

Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      ..+|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+...............|.|.+++.+|+|.|+|.+.|.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   84 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG   84 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcC
Confidence            45677777888889999999999999999999999999999988743322223334457999999999999999999998


Q ss_pred             Cce-EEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC-ceEEEeecCcEEEcccCCC
Q psy11701        203 LGY-VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG-GRYTILETGDLKITDVAFA  280 (745)
Q Consensus       203 ~g~-~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~  280 (745)
                      .|. ....+.+.|.. +|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. .++.....+.|.|.++..+
T Consensus        85 ~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  163 (192)
T 2iep_A           85 VGGAVESCGALQVKM-KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE  163 (192)
T ss_dssp             SSCCEEEEEEEEEEE-EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGG
T ss_pred             CCceeEeEEEEEEEe-CCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChh
Confidence            877 44556677764 77788888888899999999999999999999999999988753 4566667779999999999


Q ss_pred             CCEEEEEEEEeCCceE-EEEEEEEEeecc
Q psy11701        281 DSGEYTCFARNKLGTA-QGSGSLTVKEHT  308 (745)
Q Consensus       281 d~G~Y~C~~~n~~g~~-~~~~~l~v~~~p  308 (745)
                      |+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus       164 d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          164 DAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             hCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            9999999999999887 456778877653

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.91  E-value=1.4e-22  Score=190.63  Aligned_cols=184  Identities=32%  Similarity=0.540  Sum_probs=152.7

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-ecC--ceEEEccCCC-CCCEEEEEEE
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-VGP--NRITIENLRK-SDTGNYGCNA  199 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~--~~L~i~~v~~-~d~G~Y~C~~  199 (745)
                      .+|.|...|....+.+|+++.|.|.+.+.|.+.+.|+++|..+.......... ..+  ..|.|.++.. +|+|.|+|.+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            47889999999999999999999999999999999999999986322221111 122  5899999999 9999999999


Q ss_pred             EeCCce-EEEEEEEEEeecC------CeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC--ceEEEeecC
Q psy11701        200 TNSLGY-VYKDVYVNVLAHA------PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG--GRYTILETG  270 (745)
Q Consensus       200 ~~~~g~-~~~~~~l~v~~~~------p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~--~~~~~~~~~  270 (745)
                      .|..|. ....+.|.|...+      |.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+..  .++ ...++
T Consensus        85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~-~~~~~  163 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-SLKDG  163 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTE-EEETT
T ss_pred             EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeE-EccCC
Confidence            999888 6777888887532      7788888888899999999999999999999999999998753  333 34567


Q ss_pred             cEEEcccCCCCCEEEEEEEEeCCceEEEE-EEEEEeecc
Q psy11701        271 DLKITDVAFADSGEYTCFARNKLGTAQGS-GSLTVKEHT  308 (745)
Q Consensus       271 ~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~v~~~p  308 (745)
                      .|.|.++..+|+|.|+|.|.|..|..... +.|.|....
T Consensus       164 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence            99999999999999999999999988654 788887653

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.91  E-value=4e-23  Score=195.32  Aligned_cols=185  Identities=29%  Similarity=0.486  Sum_probs=147.9

Q ss_pred             CCCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCC----CeEeccCCcE---EEEccCCCCCCEEE
Q psy11701         30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGNYGKS---LIIKHVEFSDQGSY  102 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~----~~~~~~~~~~---L~i~~~~~~d~G~Y  102 (745)
                      +..|+.+...|.+..+.+|++++|.|.+.|.|.+.+.|+|+|..+....    ++... .+..   |.|.+++.+|+|.|
T Consensus         6 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~~~l~i~~v~~~d~G~Y   84 (217)
T 2vr9_A            6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK-DGALFFYRTMQGKKEQDGGEY   84 (217)
T ss_dssp             CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECT-TSCEEESSCCBSSSCBCCEEE
T ss_pred             ccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEec-CCceEEEEEeccCCcccCceE
Confidence            3456667788999999999999999999999999999999999987642    22222 2222   36889999999999


Q ss_pred             EEEEEeCCeeeEEEEEEEEEEe-cCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCC-----CCc-
Q psy11701        103 TCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPP-----NPR-  174 (745)
Q Consensus       103 ~C~~~~~~g~~~~~~~~l~V~~-~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~-----~~~-  174 (745)
                      +|.+.+..|...+..+.|.|.. +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.....     ..+ 
T Consensus        85 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~  164 (217)
T 2vr9_A           85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV  164 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSE
T ss_pred             EEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcE
Confidence            9999998887765566777765 5667777888889999999999999 8899999999999998874321     112 


Q ss_pred             eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        175 RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       175 ~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      .....+.|.|.+++.+|+|.|+|.|.|..|....+..+.+.
T Consensus       165 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             EEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence            22356789999999999999999999999988776555544

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.91  E-value=4.8e-23  Score=194.06  Aligned_cols=191  Identities=27%  Similarity=0.443  Sum_probs=147.6

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC-----eEeccCCc----EEEEccCCCCCCEEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR-----ISQGNYGK----SLIIKHVEFSDQGSY  102 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~-----~~~~~~~~----~L~i~~~~~~d~G~Y  102 (745)
                      .|+.+...|.+..+.+|++++|.|.+.|.|.+.+.|+|++..+.....     ......+.    .|.|.+++.+|+|.|
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   87 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence            356667888999999999999999999999999999999999875321     12222222    244567799999999


Q ss_pred             EEEEEeCCeeeEEEEEEEEEEe-cCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceeecCc
Q psy11701        103 TCEVSNGVGEAKSYSIDLSVLA-APYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPN  180 (745)
Q Consensus       103 ~C~~~~~~g~~~~~~~~l~V~~-~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~  180 (745)
                      +|.+.+..|...+..+.|.|.. ++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+....  .+....++
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~--~~~~~~~~  165 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD--ERITIRGG  165 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTS--TTEEEETT
T ss_pred             EEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCc--ceEEccCC
Confidence            9999998887765667777765 4556667778889999999999999 889999999999999987432  34455678


Q ss_pred             eEEEccCCCCCCEEEEEEEEeCCceEEEE-EEEEEeecCCeeeeCC
Q psy11701        181 RITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAP  225 (745)
Q Consensus       181 ~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~~~p~~~~~~  225 (745)
                      .|.|.++..+|+|.|+|.|.|..|..... +.|.|.. +|.+...|
T Consensus       166 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~-~P~~~~~P  210 (212)
T 2v9r_A          166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE-RPSFVKAA  210 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---------
T ss_pred             eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe-CchHhhhc
Confidence            99999999999999999999999986654 7888874 66665544

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.91  E-value=1.7e-24  Score=229.86  Aligned_cols=272  Identities=14%  Similarity=0.238  Sum_probs=171.5

Q ss_pred             ceEEEEEEecccCCcccCCCCCeeEeeccceeEecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC-eEeccCC---
Q psy11701         13 NRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR-ISQGNYG---   86 (745)
Q Consensus        13 ~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~-~~~~~~~---   86 (745)
                      ....|.|....      ..+|.++. .+....+.+|++++|.|.+.|. |. +.|.|+|++..+..... ......+   
T Consensus       119 ~~~~l~V~~~~------~~~P~i~~-~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~  191 (457)
T 1hzh_H          119 KGTTVIVSSAS------TKGPSVFP-LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYS  191 (457)
T ss_dssp             CCEEEEECSCC------CBCCEEEE-ECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEE
T ss_pred             CcEEEEecCCC------CCCCeEEe-cCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEE
Confidence            45567766311      23454443 3434457899999999999887 65 79999999976531100 0111111   


Q ss_pred             --cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE-----------------ecCeE-EecCceeE-eeCCCeEEE
Q psy11701         87 --KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL-----------------AAPYF-TVEPEFIN-AAEEETVTF  145 (745)
Q Consensus        87 --~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~-----------------~~p~~-~~~~~~~~-v~~G~~~~l  145 (745)
                        ..|.|.+++.+| |.|+|.|.+..+... ....+.+.                 .+|.+ ...|.... +.+|+++.|
T Consensus       192 ~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L  269 (457)
T 1hzh_H          192 LSSVVTVPSSSLGT-QTYICNVNHKPSNTK-VDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEV  269 (457)
T ss_dssp             EEEEEEECSGGGGT-SCCEEEEEEGGGTEE-EEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCE
T ss_pred             EEEEEEecccccCC-ceEEEEEEeCCCCcc-eeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEE
Confidence              369999999999 999999999765533 22333321                 24554 33333332 678999999


Q ss_pred             EEEEeecCCC----eEEEEeCCEeccCCCCCCceeecCceEEEcc---CCCCC---CEEEEEEEEeCCceEEEEEEEEE-
Q psy11701        146 ECKASGLPEP----EIHWVHNGKPISQAPPNPRRKVGPNRITIEN---LRKSD---TGNYGCNATNSLGYVYKDVYVNV-  214 (745)
Q Consensus       146 ~C~~~~~p~~----~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~---v~~~d---~G~Y~C~~~~~~g~~~~~~~l~v-  214 (745)
                      .|.+.|.+++    .+.|+|+|..+............++.|.+..   +...|   +|.|+|.|.|..+.......+.+ 
T Consensus       270 ~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~  349 (457)
T 1hzh_H          270 TCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA  349 (457)
T ss_dssp             EEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCC
T ss_pred             EEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcc
Confidence            9999987543    9999999988763221111222344555443   23455   99999999987554433333322 


Q ss_pred             --eecCCeeeeCCCc-eEEecCceEEEEEEEeecCCC--eEEEeeCCEEccCceE---EEeecC------cEEEcccCCC
Q psy11701        215 --LAHAPEITEAPKD-EYTVDGKTVVLTCRVFGAPKP--EVNWIHNQKELTGGRY---TILETG------DLKITDVAFA  280 (745)
Q Consensus       215 --~~~~p~~~~~~~~-~~v~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~---~~~~~~------~l~i~~~~~~  280 (745)
                        ...+|.+...+.. ..+..|+ ++|.|.+.+.+++  .+.|+++|..+.....   ....++      .|.|.....+
T Consensus       350 ~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~  428 (457)
T 1hzh_H          350 KGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQ  428 (457)
T ss_dssp             CCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHH
T ss_pred             cCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHcc
Confidence              2346666554433 3344455 9999999986443  8999999988753221   112233      3555555557


Q ss_pred             CCEEEEEEEEeCCc
Q psy11701        281 DSGEYTCFARNKLG  294 (745)
Q Consensus       281 d~G~Y~C~~~n~~g  294 (745)
                      |.|.|+|.|.|...
T Consensus       429 ~~g~YtC~a~n~~l  442 (457)
T 1hzh_H          429 QGNVFSCSVMHEAL  442 (457)
T ss_dssp             TTCCEEEEEECTTS
T ss_pred             CCCeEEEEEEECCC
Confidence            89999999999754

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.91  E-value=5.5e-24  Score=220.89  Aligned_cols=284  Identities=14%  Similarity=0.086  Sum_probs=201.8

Q ss_pred             EEeecceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEE
Q psy11701        303 TVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCR  382 (745)
Q Consensus       303 ~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~  382 (745)
                      .+..+..+...|....+..|++++|.|.+. .    ..+.|++++..+...   + .......|.|.++...|.|.|.|.
T Consensus       199 ~~~~~t~i~v~P~~~~v~~Gs~vtl~C~a~-~----~~I~W~~ng~~i~~~---r-i~~~~~~L~I~nl~~sd~g~y~~~  269 (488)
T 2q7n_A          199 SWIRNTETNVFPQDKVVLAGSNMTICCMSP-T----KVLSGQIGNTLRPLI---H-LYGQTVAIHILNIPVSENSGTNII  269 (488)
T ss_dssp             CCCCCSSCCEECTTCEEESSCCCEEEECCS-S----CEEEEEETTEECCCE---E-CSSSCEEEECCSCCCCCSSCEEEE
T ss_pred             CCcCCCceEECCCCCEEcCCCCEEEEEECC-C----CEEEEEECCEECchh---h-ccceEEEEEEeCCCcccCCcEEEE
Confidence            333444455667777889999999999987 2    489999999877532   2 234456899999999888777776


Q ss_pred             EEeCCceEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcc-eeeeeEEEEEEeccCCCCceeEEEEccCc
Q psy11701        383 AQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLR-GHFRGYKVQTWTEKDGEGSIRELIVNKGE  461 (745)
Q Consensus       383 a~n~~g~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~-~~i~~y~i~~~~~~~~~~~~~~~~~~~~~  461 (745)
                      +.+  +.....+.+.+..||.+|.++.+.. ....++.++|+++...... .++..|.|.|+..+.. ............
T Consensus       270 C~~--~~~i~~~~l~v~~pP~~P~nl~C~~-~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~-~~c~~~~~~~~~  345 (488)
T 2q7n_A          270 FIT--DDDVYGTVVFAGYPPDVPQKLSCET-HDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKS-AVFHRIEGLTNE  345 (488)
T ss_dssp             EEE--SSCEEEEEEEEECCCCCCCSCEEEB-SSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCE-EEEECSSCCCSS
T ss_pred             EEc--CCeEEEEEEEeeCCCCCCcccEEEE-cCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCC-CCCccccccCCc
Confidence            664  2234478888999999999999876 6889999999996544322 2578999988654321 001000000134


Q ss_pred             eeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCC-CCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEE
Q psy11701        462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP-EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIK  540 (745)
Q Consensus       462 ~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~-~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~  540 (745)
                      ...+++..+...+.|.|+|.|.|..|.++ + .+.+.+. ..+|++|.++++...+.+++.|+|++|...++.+.+|.|+
T Consensus       346 ~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~-S-~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~~g~~l~YeV~  423 (488)
T 2q7n_A          346 TYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-S-AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIE  423 (488)
T ss_dssp             CEEEEEECCSSCCCCEEEEEEEETTEEEE-E-EEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEEEECSSSEEEEEEE
T ss_pred             eEEEEEcCCCCccEEEEEEEEEeCCCCcc-c-eEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCCCCCCCcceEEEEE
Confidence            45666654444699999999999999854 4 3445433 3578999999999889999999999997667899999999


Q ss_pred             EEEcCCcccCCcccccccccCCCccee--eecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCC
Q psy11701        541 YQSVKGTKVGPLLERLPYISDPTTTSA--KLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPD  606 (745)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~  606 (745)
                      |+..+...+.....    ........+  .|.+|.|++.|.|+|+|.+ .|.|.+|+++......+++
T Consensus       424 Yr~~~~~~w~~~~~----~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e  486 (488)
T 2q7n_A          424 ICKANSKKEVRNAT----IRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTE  486 (488)
T ss_dssp             EBCTTSCCEEEEEE----EECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCC
T ss_pred             EEECCCCCceEEEE----EecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCC
Confidence            99876543311111    112123455  9999999999999999999 9998777766555555543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.91  E-value=8.2e-24  Score=195.29  Aligned_cols=166  Identities=17%  Similarity=0.213  Sum_probs=126.9

Q ss_pred             ceeEecCCcEEEEEEE---eecCCCeeEEEECCEecCC-----------------CCCeE--eccCCcEEEEccCCCCCC
Q psy11701         42 KEVALRNKKVELFCIF---GGTPLPQTIWSKDGVPINP-----------------SDRIS--QGNYGKSLIIKHVEFSDQ   99 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~---~g~p~~~v~W~~~~~~i~~-----------------~~~~~--~~~~~~~L~i~~~~~~d~   99 (745)
                      .+++..|++++|.|..   .+.|.+.|.|+|+|..+..                 ..++.  .......|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            5678999999999964   6778999999998743321                 11222  223345799999999999


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccC-CCCCCcee-e
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ-APPNPRRK-V  177 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~-~~~~~~~~-~  177 (745)
                      |.|+|.|.|..|... ..+.|.|..||.+...+....+.+|+++.|.|.+.|.|.|.++|++++..+.. .....+.. .
T Consensus        82 G~Y~C~a~n~~g~~~-~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~  160 (203)
T 4fa8_A           82 GNYLCRMKLGETEVT-KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE  160 (203)
T ss_dssp             EEEEEEEEETTEEEE-EEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEEC
T ss_pred             eEEEEEEEcCCCcEE-EEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEe
Confidence            999999999988776 67899999999999889999999999999999999999999999987655432 12222333 3


Q ss_pred             cCceE---EEccCCCCCCEEEEEEEEeCCceEEE
Q psy11701        178 GPNRI---TIENLRKSDTGNYGCNATNSLGYVYK  208 (745)
Q Consensus       178 ~~~~L---~i~~v~~~d~G~Y~C~~~~~~g~~~~  208 (745)
                      .+++|   .|.++..+|+|.|+|.|.|..|.+..
T Consensus       161 ~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          161 KDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             TTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             CCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            44544   45689999999999999999998764

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.90  E-value=1.6e-22  Score=190.19  Aligned_cols=186  Identities=27%  Similarity=0.474  Sum_probs=150.0

Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee--cCceEEEccC-CCCCCEEEEEEE
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV--GPNRITIENL-RKSDTGNYGCNA  199 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v-~~~d~G~Y~C~~  199 (745)
                      ..+|.|...|....+.+|+++.|.|.+.|.|.+.+.|+++|..+...........  ....|.|.++ +.+|+|.|+|.+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            4578899999999999999999999999999999999999998874321111111  2356999999 599999999999


Q ss_pred             EeCCceEEEEEEEEEeec------CCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC----ceEEEee-
Q psy11701        200 TNSLGYVYKDVYVNVLAH------APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG----GRYTILE-  268 (745)
Q Consensus       200 ~~~~g~~~~~~~l~v~~~------~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~----~~~~~~~-  268 (745)
                      .|..|.....+.|.|...      .|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+..    .++.... 
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~  163 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS  163 (212)
T ss_dssp             EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEE
T ss_pred             EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEec
Confidence            999999888888888753      26777788888899999999999999999999999999988753    2444333 


Q ss_pred             --cCcEEEcccCCCCCEEEEEEEEeCCceEE-EEEEEEEeecc
Q psy11701        269 --TGDLKITDVAFADSGEYTCFARNKLGTAQ-GSGSLTVKEHT  308 (745)
Q Consensus       269 --~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~-~~~~l~v~~~p  308 (745)
                        .+.|.|.++..+|.|.|+|.|.|..|... ..+.|.|..++
T Consensus       164 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence              25799999999999999999999999864 45777776544

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.90  E-value=8.1e-23  Score=192.49  Aligned_cols=196  Identities=13%  Similarity=0.172  Sum_probs=141.9

Q ss_pred             CCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCC-cccCCccccc------ccccCCCcceeeecCCCCCc
Q psy11701        504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKG-TKVGPLLERL------PYISDPTTTSAKLAGLEPST  576 (745)
Q Consensus       504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~l~~L~p~t  576 (745)
                      |.+|.++++...+.++|.|+|++|.+.+++|.+|.|+|+..+. ..|.......      ..+.......+.+.+|.|++
T Consensus         2 ~~pP~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   81 (214)
T 2ibg_A            2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQH   81 (214)
T ss_dssp             CCCCCCCEEEEEETTEEEEEEEEECCSSCCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTTC
T ss_pred             CCCCCCCEeeEecCCEEEEEEECCCCCCCCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCCC
Confidence            3456677777789999999999998878899999999998653 2222111000      00112355788999999999


Q ss_pred             cEEEEEEEEecCCCCCCcceeeecc--cC-------CCCCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCC
Q psy11701        577 KYRIHLAGYTKAGDGAESKYLFYVP--FK-------NPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTG  647 (745)
Q Consensus       577 ~Y~~~V~a~n~~G~g~~S~~~~~~~--~~-------~~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~  647 (745)
                      .|.|+|.|.|..|.|.+|.......  ..       .+..+.+....++++.|+|+++. ...+|.|.+|.|.|+..+..
T Consensus        82 ~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~~i~~Y~v~~~~~~~~  160 (214)
T 2ibg_A           82 TYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLAS-DADEHLITGYYAYYRPSSSA  160 (214)
T ss_dssp             EEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCT-TCCGGGCCEEEEEEEETTCC
T ss_pred             EEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCC-ccCCCCcceEEEEEEECCCC
Confidence            9999999999999988776332111  11       11223333456789999999887 56778999999999876332


Q ss_pred             CCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCccc
Q psy11701        648 EAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYN  727 (745)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~  727 (745)
                      ..+                                         ....+.....+++.|.+|.|++.|.|+|+|.|.+|.
T Consensus       161 ~~~-----------------------------------------~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  199 (214)
T 2ibg_A          161 GEY-----------------------------------------FKATIEGAHARSFKIAPLETATMYEFKLQSFSAASA  199 (214)
T ss_dssp             SCC-----------------------------------------EEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCB
T ss_pred             cce-----------------------------------------EEeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCcc
Confidence            111                                         111112345678999999999999999999999999


Q ss_pred             CCCCcceEEeCCCC
Q psy11701        728 GPPSEIISFVTPEG  741 (745)
Q Consensus       728 g~~s~~~~~~t~~~  741 (745)
                      |++|+++.++|.+.
T Consensus       200 g~~S~~~~~~T~~p  213 (214)
T 2ibg_A          200 SEFSALKQGRTQRP  213 (214)
T ss_dssp             CCCCCCEEEECCCC
T ss_pred             CCCcceEeeEecCC
Confidence            99999999999763

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.90  E-value=2.4e-23  Score=195.14  Aligned_cols=192  Identities=16%  Similarity=0.198  Sum_probs=142.8

Q ss_pred             CCCCCCCCCceeEEEcCCceEEEEeeCCCCCCC-ceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccE
Q psy11701        500 PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY  578 (745)
Q Consensus       500 ~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y  578 (745)
                      ..++|++|.++++...+. ++.|+|++|.+.+| +|.+|.|+|+..+...|.......  ........+.+.+|+|++.|
T Consensus         5 ~~~~P~~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y   81 (209)
T 2vkw_A            5 QADTPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA--KEASMEGIVTIVGLKPETTY   81 (209)
T ss_dssp             CCCCCCCCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEH--HHHHHHSEEEECCCCTTCEE
T ss_pred             ccCCCcCCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeec--cCCCccceEEeCCCCCCCeE
Confidence            357899999999988877 68999999986666 499999999987655443221100  00123468999999999999


Q ss_pred             EEEEEEEecCCCCCCcceeeecccCC--CC---CCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCcc
Q psy11701        579 RIHLAGYTKAGDGAESKYLFYVPFKN--PD---NVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQD  653 (745)
Q Consensus       579 ~~~V~a~n~~G~g~~S~~~~~~~~~~--~~---~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~  653 (745)
                      .|+|.|.|..|.|++|..+...+...  +.   .+.+....++++.|+|.++  ...+|.|.+|.|.|+..  ...+...
T Consensus        82 ~~~V~A~n~~G~~~~s~~~~~~T~~~~~P~~P~~~~~~~~~~~sv~l~W~~p--~~~~~~i~~Y~v~~~~~--~~~~~~~  157 (209)
T 2vkw_A           82 AVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ--DDGGSPIRHYLVRYRAL--SSEWKPE  157 (209)
T ss_dssp             EEEEEEEETTEECCCCCCEEEECCCSCSCCCCEEEEEECTTSSCEEEEEECC--CCTTSCCCEEEEEEEET--TSCCCCC
T ss_pred             EEEEEEEcCCcccCCcccccccccCCCCCCCCcccccccccCCeEEEEEECc--ccCCCCCceEEEEEECC--CCCCcee
Confidence            99999999999999988765543322  11   1122245678999999975  56788999999999872  2111110


Q ss_pred             CccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcc
Q psy11701        654 DVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI  733 (745)
Q Consensus       654 ~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~  733 (745)
                                                               ...++..+++.|.+|.|++.|.|+|+|.|.+|.|++|++
T Consensus       158 -----------------------------------------~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~  196 (209)
T 2vkw_A          158 -----------------------------------------IRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHF  196 (209)
T ss_dssp             -----------------------------------------EEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEE
T ss_pred             -----------------------------------------eecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchh
Confidence                                                     111456788999999999999999999999999999998


Q ss_pred             eEEeCC
Q psy11701        734 ISFVTP  739 (745)
Q Consensus       734 ~~~~t~  739 (745)
                      +.+++.
T Consensus       197 ~~~~~~  202 (209)
T 2vkw_A          197 VFRTAA  202 (209)
T ss_dssp             EEECC-
T ss_pred             hhhhhh
Confidence            877664

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.90  E-value=1.8e-24  Score=218.12  Aligned_cols=265  Identities=15%  Similarity=0.191  Sum_probs=168.9

Q ss_pred             cCeEEecCceeEeeCC--CeEEEEEEEeec-C-CCeEEEEeCCEeccCCCCCCc-ee-----ecCceEEEccCCCCCCEE
Q psy11701        125 APYFTVEPEFINAAEE--ETVTFECKASGL-P-EPEIHWVHNGKPISQAPPNPR-RK-----VGPNRITIENLRKSDTGN  194 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G--~~~~l~C~~~~~-p-~~~v~W~~~g~~~~~~~~~~~-~~-----~~~~~L~i~~v~~~d~G~  194 (745)
                      +|.+...+.......|  +++.|.|.+.+. | .+.|+|+|+|..+........ ..     ...+.|.|.++..+|+|.
T Consensus         7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~   86 (323)
T 2wqr_A            7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT   86 (323)
T ss_dssp             CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCc
Confidence            4554444333223344  699999999885 4 469999999998864321100 11     112357888888889999


Q ss_pred             EEEEEEeCCceEEEEEEEEE--eecCCe-eeeCCCceEEecCceEEEEEEEeec-CCC---eEEEeeCC-EEccCce-EE
Q psy11701        195 YGCNATNSLGYVYKDVYVNV--LAHAPE-ITEAPKDEYTVDGKTVVLTCRVFGA-PKP---EVNWIHNQ-KELTGGR-YT  265 (745)
Q Consensus       195 Y~C~~~~~~g~~~~~~~l~v--~~~~p~-~~~~~~~~~v~~g~~~~l~C~~~~~-p~~---~i~W~~~~-~~~~~~~-~~  265 (745)
                      |+|.|.|..+.....+.+.+  ...+|. +...|....+.+|+.++|.|.+.+. |.+   .|.|++++ ..+.... ..
T Consensus        87 Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~  166 (323)
T 2wqr_A           87 YTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKE  166 (323)
T ss_dssp             EEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEE
T ss_pred             EEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCC
Confidence            99999998776544432211  111233 3445555567889999999999886 445   89999975 3332211 11


Q ss_pred             -------EeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEE----eecceeecCCCcEEEecCCeEEEEEEEEec
Q psy11701        266 -------ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV----KEHTHITDQPEDYEVEAGQSATFRCNAVSD  334 (745)
Q Consensus       266 -------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v----~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~  334 (745)
                             ....+.|.|.+++.+|+|.|+|.|.|..+.......+.+    ..+|.+...+.......|+.+.|.|.+.+.
T Consensus       167 ~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~  246 (323)
T 2wqr_A          167 EKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNF  246 (323)
T ss_dssp             EECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEE
T ss_pred             ccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeee
Confidence                   012346999999999999999999998643322222221    133433222111111239999999999986


Q ss_pred             CCCCcEEEEeeCCeeccCCC---CCeEEEc-----CCeEEEEecCCCCCCEEEEEEEEeCCce
Q psy11701        335 PSLKLSIVWLRGSEPIDFES---EPRFVQS-----NDYSLTVTKSSELDSGQYTCRAQTELDF  389 (745)
Q Consensus       335 ~~~~~~i~W~~~~~~~~~~~---~~~~~~~-----~~~~l~i~~~~~~~~g~y~c~a~n~~g~  389 (745)
                      +++.+.+.|++++..+....   .......     ..+.|.|......|.|.|+|.|.|..+.
T Consensus       247 ~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          247 MPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             BSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             eCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            55456899999998875321   0000011     1246888888888999999999998875

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.90  E-value=2.1e-22  Score=200.73  Aligned_cols=230  Identities=13%  Similarity=0.093  Sum_probs=158.8

Q ss_pred             ceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEE
Q psy11701        461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIK  540 (745)
Q Consensus       461 ~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~  540 (745)
                      ....++|.++... ...|.|.|.|. |...............+|++|.++.+...+.++++|+|++|.+.+ .+++|.|+
T Consensus        63 ~~~~L~i~~~~~~-~g~Y~C~a~~~-g~~~~~~~~~~l~v~~~P~~P~~l~~~~~~~~~v~l~W~~~~~~~-~~~~Y~v~  139 (303)
T 1i1r_A           63 TASSVTFTDIASL-NIQLTCNILTF-GQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETH-LETNFTLK  139 (303)
T ss_dssp             TEEEEEECSCCCS-EEEEEEEEEET-TTEEEEEEEEEEEEECCCCCCEEEEEEEETTSCCEEEEECCSCCS-SCCEEEEE
T ss_pred             cEEEEEEcCcCCC-ceEEEEecccC-CCcceEEEEEEEeccCCCCCCeeeEEEECCCCcEEEEccCCCCCC-CCcCEEEE
Confidence            3567889998876 46788888773 432211111111224678999999998888899999999998755 46899999


Q ss_pred             EEEcCCcccCCcccccccccCCCcceeeecCC-CCCccEEEEEEEEecCCCCCCcceeeecc----cCCCCCCCCC--CC
Q psy11701        541 YQSVKGTKVGPLLERLPYISDPTTTSAKLAGL-EPSTKYRIHLAGYTKAGDGAESKYLFYVP----FKNPDNVEGR--GS  613 (745)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~----~~~~~~~~~~--~~  613 (745)
                      |+......+ ...     .......++.|.+| .|++.|+|+|.|.|..|.|.++.......    ..+|..+.+.  ..
T Consensus       140 ~~~~~~~~~-~~~-----~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~v~~~~~  213 (303)
T 1i1r_A          140 SEWATHKFA-DCK-----AKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEE  213 (303)
T ss_dssp             EEETTEECC-CEE-----CCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEEEECCSS
T ss_pred             EEecCCCCc-cCC-----CcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceEEEEecC
Confidence            987643211 111     11445688999999 99999999999999999986544322111    1122222222  23


Q ss_pred             CCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEE
Q psy11701        614 TPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRE  693 (745)
Q Consensus       614 ~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~  693 (745)
                      .++++.|+|+++..  .+|.|.+|.|+|+..+. ..|......+                                    
T Consensus       214 ~~~sv~l~W~~p~~--~~~~i~~Y~v~y~~~~~-~~w~~~~~~~------------------------------------  254 (303)
T 1i1r_A          214 LSSILKLTWTNPSI--KSVIILKYNIQYRTKDA-STWSQIPPED------------------------------------  254 (303)
T ss_dssp             SSSCEEEEEECCGG--GGTSCEEEEEEEEETTC-SSCEECCGGG------------------------------------
T ss_pred             CCCEEEEEECCCCC--CCcccEEEEEEEEeCCC-CCceEEcccc------------------------------------
Confidence            67899999997765  46789999999997632 1221110000                                    


Q ss_pred             EEEecCCCcEEEecccccCCcceeEEEEecCcccCCC---CcceEEeCCCC
Q psy11701        694 LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPP---SEIISFVTPEG  741 (745)
Q Consensus       694 ~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~---s~~~~~~t~~~  741 (745)
                         ..+..+.+.|.+|.|++.|.|+|+|.|.+|.|+|   |+++.++|+|+
T Consensus       255 ---~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~e~  302 (303)
T 1i1r_A          255 ---TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED  302 (303)
T ss_dssp             ---GCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECCCC
T ss_pred             ---CCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCCcC
Confidence               0235678899999999999999999999998776   57899999885

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.90  E-value=6.8e-23  Score=202.84  Aligned_cols=282  Identities=15%  Similarity=0.122  Sum_probs=161.2

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEE-ccCceeEEEe--cccccCcceeE
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV-NKGESTTTEV--DKFVPASKNFA  478 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i--~~L~~~~~Y~~  478 (745)
                      +.+|+++++.. . ..++.|+|+++..  .++.+. |.|+|...+.  ..|..... .......+.+  ..|.+++.|.|
T Consensus         4 l~~P~nv~~~~-~-n~~~iL~W~pp~~--~~~~v~-Y~V~y~~~~~--~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~   76 (306)
T 3s98_A            4 LKSPQKVEVDI-I-DDNFILRWNRSDE--SVGNVT-FSFDYQKTGM--DNWIKLSGCQNITSTKCNFSSLKLNVYEEIKL   76 (306)
T ss_dssp             ----CCCEEEE-E-TTEEEEECC----------CE-EEEEEEESSC--SSCEECTTCSSBSSSEEECCC---CTTSCEEE
T ss_pred             CCCCcEeEEEE-E-CCeEEEEEcCCCC--CCCCeE-EEEEEEECCC--CCcEECCCccCCCCCEEEccccccCCCCcEEE
Confidence            46799999976 4 4567899999643  345565 9999987533  23332210 0123334444  45789999999


Q ss_pred             EEEEecCCCCCCCCcceEEeCCCC-CCCCCCceeEEEcCCceEEEEeeCCCCC------CCceeeEEEEEEEcCCcccCC
Q psy11701        479 RVLAFNGAYNGPPSEIISFVTPEG-VPGTVQSLEAIPLGSSAFYLKWVKPEQP------NGVLMGYKIKYQSVKGTKVGP  551 (745)
Q Consensus       479 ~V~a~n~~G~g~~S~~~~~~t~~~-~P~~p~~~~~~~~~~~~i~l~W~~p~~~------~g~i~~Y~v~~~~~~~~~~~~  551 (745)
                      ||+|.| .|.|+++....+.+.+. .++|| .+.+.... ++|.|+|.||...      +|.+.+|.|.|+..+....  
T Consensus        77 rV~A~n-~~~S~~s~~~~f~~~~~~~~~pP-~v~~~~~~-~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~~~~~~~--  151 (306)
T 3s98_A           77 RIRAEK-ENTSSWYEVDSFTPFRKAQIGPP-EVHLEAED-KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVE--  151 (306)
T ss_dssp             EEEEEC-SSCEEEEECCCBCHHHHCBCCCC-EEEEEECS-SCEEEEEECC---CCCC-----CCEEEEEEEETTTCCC--
T ss_pred             EEEEEe-CCcCCCEeeeeEechhhCccCCC-eEEEEEcC-CEEEEEEECCCCCCcceeccCCcEEEEEEEEECCCCCe--
Confidence            999999 88887776566655443 34455 47776544 6899999966542      4689999999988765421  


Q ss_pred             cccccccccCCCcceeeecCCCCCccEEEEEEEEe--cCCCCCCcceeeecccCCCCCCCCCCCCCcceeEEEeecCccc
Q psy11701        552 LLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYT--KAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIE  629 (745)
Q Consensus       552 ~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n--~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~~~v~W~~~~~~~  629 (745)
                      +.     + ......+.|.+|.|++.|.|+|.|+|  ..|.|++|......+...     .++.+|.+|.+  ..     
T Consensus       152 ~~-----~-~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~-----~p~~~P~~v~~--~~-----  213 (306)
T 3s98_A          152 ER-----I-ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVE-----NELPPPENIEV--SV-----  213 (306)
T ss_dssp             EE-----E-EEECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSC-----CSSCCCEEEEE--EE-----
T ss_pred             EE-----E-ecccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCC-----CcCCCCceEEE--EE-----
Confidence            11     1 12357899999999999999999999  789999998875554322     11233443332  11     


Q ss_pred             cCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEE-EEeeeecCCCCeEEEE---EecCCCcEEE
Q psy11701        630 HNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVV-QTWTEKDGEGSIRELI---VNKGESTTTE  705 (745)
Q Consensus       630 ~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~-a~~~~~~~~~~~~~~~---~~~~~~~~~~  705 (745)
                      .+   ..+.|.|.++..+.                        .|.+... .+.....+.++..+..   ......+.+.
T Consensus       214 ~~---~s~~l~W~~p~~~~------------------------~~~v~~~~gy~~~~~~~~~~~W~~~~~c~~~~~~~c~  266 (306)
T 3s98_A          214 QN---QNYVLKWDYTYANM------------------------TFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCV  266 (306)
T ss_dssp             ET---TEEEEEEECSSSSC------------------------EEEEEEEEGGGGSCC----CCCEECGGGTTBSSSEEE
T ss_pred             ec---CEEEEEeCCCCCcE------------------------EEEEEEehhhhhccccccccCceECCCceeCCCcccc
Confidence            11   33445554431110                        0100000 0000000100101110   0123556677


Q ss_pred             ecc-cccCCcceeEEEEecCcccCCCCcceEEeCCC
Q psy11701        706 VDK-FVPASKNFARVLAFNGAYNGPPSEIISFVTPE  740 (745)
Q Consensus       706 i~~-L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~  740 (745)
                      +.+ |.+...|.|||+|.|++|.|.+|+.+.|+|..
T Consensus       267 ~~~~~~~~~~Y~~RV~A~n~~~~s~~s~~~~~~~~~  302 (306)
T 3s98_A          267 FPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEI  302 (306)
T ss_dssp             EEGGGSCSSEEEEEEEEECSSCBCCCCCCEEEEC--
T ss_pred             CchhhcccCCEEEEEEEccCCCccccccccccCccc
Confidence            777 44555999999999999999999999999864

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.90  E-value=1.1e-23  Score=214.35  Aligned_cols=255  Identities=18%  Similarity=0.316  Sum_probs=166.6

Q ss_pred             cCceeEeeCCCeEEEEEEEeec--CCCeEEEEeC--CEecc--------------CCCCCCceee------cCceEEEcc
Q psy11701        131 EPEFINAAEEETVTFECKASGL--PEPEIHWVHN--GKPIS--------------QAPPNPRRKV------GPNRITIEN  186 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~--g~~~~--------------~~~~~~~~~~------~~~~L~i~~  186 (745)
                      .|....+.+|++++|.|.+.+.  +.+.+.|+|+  |..+.              ......++..      ....|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            3556788999999999999886  3579999996  33221              0011223332      124899999


Q ss_pred             CCCCCCEEEEEEEEeCCceEEEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CC-CeEEEeeCCEEcc-
Q psy11701        187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PK-PEVNWIHNQKELT-  260 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~-  260 (745)
                      ++.+|+|.|+|.+.|..+.......|.|..   .+|.+...+....+.+|+.++|.|.+.+. |. +.+.|++++..+. 
T Consensus        86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~  165 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV  165 (344)
T ss_dssp             CCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTE
T ss_pred             CCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCce
Confidence            999999999999998654444456777763   34555544434446789999999999987 54 6899999986531 


Q ss_pred             ---------CceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEE------------------------Eeec
Q psy11701        261 ---------GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLT------------------------VKEH  307 (745)
Q Consensus       261 ---------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~------------------------v~~~  307 (745)
                               ++.+.  ..+.|.|.++..+| |.|+|.|.|..+.......+.                        +..+
T Consensus       166 ~~~~~~~~~~~~~~--~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~  242 (344)
T 1za6_B          166 HTFPAVLQSSGLYS--LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPRE  242 (344)
T ss_dssp             EECCCEECTTSCEE--EEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBC
T ss_pred             eECCCeECCCCCEE--EEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcC
Confidence                     11221  12368898888777 999999999887643322221                        1223


Q ss_pred             ceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCe------EEEEecCCCCCCEEEEE
Q psy11701        308 THITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDY------SLTVTKSSELDSGQYTC  381 (745)
Q Consensus       308 p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~g~y~c  381 (745)
                      |.+...+.......|+.+.|.|.+.+.+++.+.+.|++++..+............++      .|.|......|.|.|+|
T Consensus       243 P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC  322 (344)
T 1za6_B          243 PQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSC  322 (344)
T ss_dssp             CEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEE
T ss_pred             CEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEE
Confidence            332222111111246679999999997655689999999887652211112222222      34454444456999999


Q ss_pred             EEEeCCc
Q psy11701        382 RAQTELD  388 (745)
Q Consensus       382 ~a~n~~g  388 (745)
                      .|.|...
T Consensus       323 ~a~~~~l  329 (344)
T 1za6_B          323 SVMHEAL  329 (344)
T ss_dssp             EEECTTS
T ss_pred             EEEcCCC
Confidence            9999764

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.90  E-value=1e-21  Score=181.07  Aligned_cols=174  Identities=26%  Similarity=0.458  Sum_probs=145.5

Q ss_pred             cCeEEecCceeEeeC-CCeEEEEEEEeecCC--CeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEe
Q psy11701        125 APYFTVEPEFINAAE-EETVTFECKASGLPE--PEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~-G~~~~l~C~~~~~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      +|.+.. +....+.+ |+++.|.|.+.+.|.  +.+.|+|+|..+.....    ...++.|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n   77 (190)
T 2wv3_A            3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK----NASNMEYRINKPRAEDSGEYHCVYHF   77 (190)
T ss_dssp             CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCB----CCSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccce----EeccEEEEEecCCcccCEEEEEEEEe
Confidence            566665 44455666 999999999998876  79999999998874322    22557899999999999999999999


Q ss_pred             CCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEee--CCEEc----cCceEEEeecC---cE
Q psy11701        202 SLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH--NQKEL----TGGRYTILETG---DL  272 (745)
Q Consensus       202 ~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~--~~~~~----~~~~~~~~~~~---~l  272 (745)
                      . +.....+.|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+.+.|++  ++..+    ...++.+...+   .|
T Consensus        78 ~-~~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L  155 (190)
T 2wv3_A           78 V-SAPKANATIEVKA-APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTEL  155 (190)
T ss_dssp             T-TEEEEEEEEEEEC-CCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEE
T ss_pred             C-CcccccEEEEEec-CCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEE
Confidence            9 8888888898885 7888888888889999999999999999999999999  77665    34555554433   69


Q ss_pred             EEcccC-CCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        273 KITDVA-FADSGEYTCFARNKLGTAQGSGSLTVK  305 (745)
Q Consensus       273 ~i~~~~-~~d~G~Y~C~~~n~~g~~~~~~~l~v~  305 (745)
                      .|.++. .+|.|.|+|.|.|..|.....+.|.|.
T Consensus       156 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          156 NIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            999999 799999999999999998888888775

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.90  E-value=2.1e-22  Score=187.08  Aligned_cols=181  Identities=25%  Similarity=0.408  Sum_probs=147.1

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cC--ceEEEccCCCCCCEEEEEEEE
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GP--NRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~--~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      .+|.|...+....+.+|+++.|.|.+.+.|.+.+.|+++|..+........... ..  ..|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            478888889999999999999999999999999999999998874332222222 22  289999999999999999999


Q ss_pred             eCCceEEEEEEEEEeecCCeeee-----CCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC-ceEEEe---ecCc
Q psy11701        201 NSLGYVYKDVYVNVLAHAPEITE-----APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG-GRYTIL---ETGD  271 (745)
Q Consensus       201 ~~~g~~~~~~~l~v~~~~p~~~~-----~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~---~~~~  271 (745)
                      |..|.....+.|.|.. +|.+..     .+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. .++...   ..+.
T Consensus        83 n~~g~~~~~~~l~V~~-~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~  161 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEV-PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS  161 (197)
T ss_dssp             ETTEEEEEEEEEEEEE-EEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEE
T ss_pred             ECCCceeEEEEEEEcC-CCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceE
Confidence            9999888888888875 333322     23445688899999999999999999999999988753 344332   2347


Q ss_pred             EEEcc-cCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        272 LKITD-VAFADSGEYTCFARNKLGTAQGSGSLTVK  305 (745)
Q Consensus       272 l~i~~-~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~  305 (745)
                      |.|.+ +..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus       162 L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            99999 99999999999999999998888888875

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.7e-22  Score=190.76  Aligned_cols=169  Identities=24%  Similarity=0.345  Sum_probs=144.3

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      ...+...|.+..+.+|++++|.|.+.|.|.+.+.|+|++..+...       .+..|.|.+++.+|+|.|+|.+.+..|.
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~   90 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-------NTSELIFNAVHVKDAGFYVCRVNNNFTF   90 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-------CSSEEEETTCCGGGCEEEEEEEECTTCC
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-------CCCEEEEccCChhhCeEeEEEEEcCCCC
Confidence            344567889999999999999999999999999999999998643       2458999999999999999999998876


Q ss_pred             eEEEEEEEEEEec---------------CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee
Q psy11701        113 AKSYSIDLSVLAA---------------PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV  177 (745)
Q Consensus       113 ~~~~~~~l~V~~~---------------p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~  177 (745)
                      ..+..+.|.|...               |.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+....       
T Consensus        91 ~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~-------  163 (218)
T 3k0w_A           91 EFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------  163 (218)
T ss_dssp             EECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC-------
T ss_pred             ceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC-------
Confidence            6666688888765               677888888899999999999999999999999999999887432       


Q ss_pred             cCceEEEccCCCCCCEEEEEEEEeCCceE-EEEEEEEEee
Q psy11701        178 GPNRITIENLRKSDTGNYGCNATNSLGYV-YKDVYVNVLA  216 (745)
Q Consensus       178 ~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~-~~~~~l~v~~  216 (745)
                       ...|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..
T Consensus       164 -~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          164 -KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             -SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             -CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence             3589999999999999999999988874 3446666653

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.90  E-value=1.1e-22  Score=189.94  Aligned_cols=181  Identities=24%  Similarity=0.274  Sum_probs=146.6

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEE-EeecCC-CeeEEEECCEecC--CCCCeEeccCCcEEEEccCCCCCCEEEEEEEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCI-FGGTPL-PQTIWSKDGVPIN--PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~-~~g~p~-~~v~W~~~~~~i~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      .|......+....+.+|++++|.|. +.+.|. +.+.|+|++..+.  ...+......+.+|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   86 (201)
T 3s97_C            7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVS   86 (201)
T ss_dssp             ECCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEE
Confidence            3555566778889999999999999 888898 9999999998774  33445555566789999999999999999999


Q ss_pred             eCCeeeEE--EEEEEEEE-------ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec
Q psy11701        108 NGVGEAKS--YSIDLSVL-------AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG  178 (745)
Q Consensus       108 ~~~g~~~~--~~~~l~V~-------~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~  178 (745)
                      +..+....  ..+.+.+.       .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...   ......
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~---~~~~~~  163 (201)
T 3s97_C           87 SPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST---AEISTS  163 (201)
T ss_dssp             EGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTT---CEEETT
T ss_pred             ecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCc---eeecCC
Confidence            86554432  22333332       3566766666888999999999999999999999999999977632   344456


Q ss_pred             CceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       179 ~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      .+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          164 GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            7799999999999999999999999999888888875

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.90  E-value=5e-25  Score=232.21  Aligned_cols=258  Identities=16%  Similarity=0.245  Sum_probs=171.5

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCC--------CCCeEeccCCcEEEEccCCCCCCEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINP--------SDRISQGNYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~--------~~~~~~~~~~~~L~i~~~~~~d~G~  101 (745)
                      +|.++...+.. .+.+|+.++|.|.+.|. |.+ .|.|+|++..+..        ...+..   .+.|.|.+++.+| |.
T Consensus       119 ~P~i~~~~~~~-~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~---~s~L~i~~~~~~d-g~  193 (434)
T 1igy_B          119 PPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL---SSSVTVPSSPRPS-ET  193 (434)
T ss_dssp             CCCEEEECCCC-CCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEE---EEEEEEETTTTTS-SC
T ss_pred             CCeEEEcCCcc-ccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEE---EEEEEEcchhcCC-Cc
Confidence            45555444433 46899999999999886 776 9999999876421        011111   2469999999999 99


Q ss_pred             EEEEEEeCCeeeEEEEEEEEEEe----------c--CeEEecCce-eE-eeCCCeEEEEEEEeecC----CCeEEEEeCC
Q psy11701        102 YTCEVSNGVGEAKSYSIDLSVLA----------A--PYFTVEPEF-IN-AAEEETVTFECKASGLP----EPEIHWVHNG  163 (745)
Q Consensus       102 Y~C~~~~~~g~~~~~~~~l~V~~----------~--p~~~~~~~~-~~-v~~G~~~~l~C~~~~~p----~~~v~W~~~g  163 (745)
                      |+|.|.+..+... ....+.+..          .  |.+...+.. .. +.+|+++.|.|.+.|.+    .+.+.|+|+|
T Consensus       194 Y~C~a~n~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~  272 (434)
T 1igy_B          194 VTCNVAHPASSTK-VDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDN  272 (434)
T ss_dssp             CEEEEECTTTTCC-EEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSS
T ss_pred             EEEEEEeCCCCcc-ceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCC
Confidence            9999999877643 122232210          0  444333332 22 88999999999999873    3589999999


Q ss_pred             EeccCCCCCCc------eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE---eecCCeeeeCCCceEEecCc
Q psy11701        164 KPISQAPPNPR------RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV---LAHAPEITEAPKDEYTVDGK  234 (745)
Q Consensus       164 ~~~~~~~~~~~------~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v---~~~~p~~~~~~~~~~v~~g~  234 (745)
                      ..+........      .....+.|.|.++..+|+|.|+|.|.|..|.......+.+   ...+|.+...+.......|+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~  352 (434)
T 1igy_B          273 VEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKD  352 (434)
T ss_dssp             CCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSS
T ss_pred             cccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCC
Confidence            87753321111      1112457999999999999999999998875422222221   22366665544433344577


Q ss_pred             eEEEEEEEeec-CC-CeEEEeeCCEEccCceEEE---eecC------cEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        235 TVVLTCRVFGA-PK-PEVNWIHNQKELTGGRYTI---LETG------DLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       235 ~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~---~~~~------~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      .++|.|.+.+. |. +.|.|++++..+.......   ..++      .|.|.....+|.|.|+|.|.|....
T Consensus       353 ~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          353 KVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             EEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             cEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence            89999999985 43 3899999998774322111   1223      3666666667899999999997543

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.90  E-value=1.1e-22  Score=189.07  Aligned_cols=187  Identities=18%  Similarity=0.298  Sum_probs=153.2

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .+|.+|.++.+.. .+.+++.|.|+++. ...+.++.+|.|+|+.....  .+..+.. ......+.+.+|.+++.|.|+
T Consensus         4 ~~P~~P~~l~~~~-~~~~sv~l~W~~p~-~~~~~~i~~Y~v~~~~~~~~--~~~~~~~-~~~~~~~~~~~L~p~t~Y~~~   78 (197)
T 3lpw_A            4 DTPGPPQDLKVKE-VTKTSVTLTWDPPL-LDGGSKIKNYIVEKRESTRK--AYSTVAT-NCHKTSWKVDQLQEGCSYYFR   78 (197)
T ss_dssp             CSCCCCEEEEEEE-ECSSCEEEEEECCS-CCTTSCCCEEEEEEEETTCS--SCEEEEE-EECSSEEEECCCCTTCEEEEE
T ss_pred             CCCCCCCCcEEEE-ecCCEEEEEEcCCc-cCCCCcccEEEEEEEECCCC--ccEEeec-CCCccEEEEcCCCCCCEEEEE
Confidence            5789999999887 88999999999853 23334589999988766442  3444444 456788999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCC-ceeeEEEEEEEcCCcccCCccccccc
Q psy11701        480 VLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPY  558 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~  558 (745)
                      |.|.|..|.+.++....+.+...+|.+|.++.+...+.+++.|+|.+|...++ .+.+|.|+|+..+...+....     
T Consensus        79 V~a~~~~g~~~~s~~~~~~t~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~-----  153 (197)
T 3lpw_A           79 VLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCA-----  153 (197)
T ss_dssp             EEEEETTEECCCEECSSCEESCCCCCCCSCEEEEEECSSCEEEEECCCSCCTTSCCCEEEEEEEETTCSCCEEEE-----
T ss_pred             EEEEcCccccCCCCCccceecCCCCCCCcccEEEeccCCeEEEEecCCCcCCCCcccEEEEEEEeCCCCceEEee-----
Confidence            99999999998887767777788899999999999999999999999876554 999999999987655433222     


Q ss_pred             ccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceee
Q psy11701        559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF  598 (745)
Q Consensus       559 ~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~  598 (745)
                        ....+++.+.+|.|++.|.|+|.|.|..|.|++|....
T Consensus       154 --~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~  191 (197)
T 3lpw_A          154 --TVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSV  191 (197)
T ss_dssp             --EESSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSS
T ss_pred             --cccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCcc
Confidence              34568899999999999999999999999999986653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.90  E-value=1.2e-22  Score=188.81  Aligned_cols=164  Identities=19%  Similarity=0.257  Sum_probs=133.1

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCe-eEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQ-TIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~-v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      ..+...|.+..+.+|++++|.|.+.+.|.+. +.|+|+|..|...        ...|.|.+++.+|+|.|+|.+.+... 
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~--------~~~L~i~~v~~~D~G~Y~C~a~n~~~-   78 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ--------ASSYFIDAATVDDSGEYRCQTQLSTL-   78 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC--------SSEEEESSCCGGGCEEEEEEETTSBC-
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC--------ccEEEEecccccCCEEEEEEeCCCcc-
Confidence            3456777778999999999999999988775 9999999988733        36899999999999999999976422 


Q ss_pred             eEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCC
Q psy11701        113 AKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSD  191 (745)
Q Consensus       113 ~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d  191 (745)
                        +..+.|.|..+|.+...+. ..+.+|++++|.|.+.+. |.+.+.|+|+|..+..       ....+.|.|.+++.+|
T Consensus        79 --s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~-------~~~~~~L~i~~v~~~D  148 (204)
T 3sgj_C           79 --SDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY-------FHHNSDFYIPKATLKD  148 (204)
T ss_dssp             --CCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGG
T ss_pred             --cccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec-------ccCCceEEECcCCccc
Confidence              3457888888887766665 678899999999999665 5679999999998642       2346789999999999


Q ss_pred             CEEEEEEEEeCCc-eEEEEEEEEEee
Q psy11701        192 TGNYGCNATNSLG-YVYKDVYVNVLA  216 (745)
Q Consensus       192 ~G~Y~C~~~~~~g-~~~~~~~l~v~~  216 (745)
                      +|.|+|.|.|..+ ..+..+.|.|..
T Consensus       149 ~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (204)
T 3sgj_C          149 SGSYFCRGLVGSKNVSSETVQITITQ  174 (204)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CEEEEEEEEeCCCceecCcEEEEEeC
Confidence            9999999999543 444457777764

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.90  E-value=6.2e-23  Score=193.35  Aligned_cols=181  Identities=20%  Similarity=0.374  Sum_probs=143.9

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEec------------CCCCCeEeccCCcEEEEccCCCCCCE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPI------------NPSDRISQGNYGKSLIIKHVEFSDQG  100 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i------------~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (745)
                      |..+...+.+..+.+|++++|.|.+.+.|.+.+.|+|++..+            ....++.+..  .+|.|.+++.+|+|
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~L~i~~v~~~D~G   78 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS--SGITFSSVTRKDNG   78 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET--TEEEESCCCGGGCE
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec--eeEEEcccCcccCe
Confidence            456677888999999999999999998899999999987652            1234555433  78999999999999


Q ss_pred             EEEEEEEeCCee-eEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEE-EeecCCCeEEEEeCCE-eccCCCCC-----
Q psy11701        101 SYTCEVSNGVGE-AKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECK-ASGLPEPEIHWVHNGK-PISQAPPN-----  172 (745)
Q Consensus       101 ~Y~C~~~~~~g~-~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~-~~~~p~~~v~W~~~g~-~~~~~~~~-----  172 (745)
                      .|+|.+.+..|. ..+..+.|.|..+|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+......     
T Consensus        79 ~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~  158 (212)
T 1f97_A           79 EYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFM  158 (212)
T ss_dssp             EEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCS
T ss_pred             EEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccccccccc
Confidence            999999997662 334678899999988777666678899999999999 6889999999999999 87643322     


Q ss_pred             -Ccee--ecCceEEEccCCCCCCEEEEEEEEeCCceEEE--EEEEEEe
Q psy11701        173 -PRRK--VGPNRITIENLRKSDTGNYGCNATNSLGYVYK--DVYVNVL  215 (745)
Q Consensus       173 -~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~--~~~l~v~  215 (745)
                       ....  ...+.|.|.++..+|+|.|+|.|.|..|....  .+.|.|.
T Consensus       159 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          159 NSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             SSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             CceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence             1122  24678999999999999999999999998733  4566554

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.89  E-value=1.9e-21  Score=192.06  Aligned_cols=258  Identities=17%  Similarity=0.193  Sum_probs=189.1

Q ss_pred             cCCCcEEE--ecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeE-EEcCCeEEEEecCCCCCCEEEEEEEEeCCc
Q psy11701        312 DQPEDYEV--EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTKSSELDSGQYTCRAQTELD  388 (745)
Q Consensus       312 ~~p~~~~~--~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g  388 (745)
                      ..|.++.+  .....+.|.|.....+...+.+.|......-   ..... .......+.|.++.....+.+++.|.|..|
T Consensus        16 ~~P~~l~~~~~~~~sv~l~W~~~~~~~~~Y~v~~~~~~~~~---~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   92 (283)
T 1tdq_A           16 DGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEG---GKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTN   92 (283)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCSSCCSEEEEEEEESSSSC---CCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCcEEEEEecCCCeEEEEEECCCCceeEEEEEEEEecCCC---CcEEEEeCCCCCEEEecCCCCCCEEEEEEEEECCCC
Confidence            34444443  3456788888766533334677774321110   11111 123456789999999999999999999887


Q ss_pred             eEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCc---eeEE
Q psy11701        389 FIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE---STTT  465 (745)
Q Consensus       389 ~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~---~~~~  465 (745)
                      .+. ...+.+..+|.+|.++.+.. .+.+++.|.|+++.     +.+.+|.|+|+......  +....+ ...   ...+
T Consensus        93 ~s~-~~~~~~~t~p~~P~~l~~~~-~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~~~~--~~~~~~-~~~~~~~~~~  162 (283)
T 1tdq_A           93 ESD-ASSTQFTTEIDAPKNLRVGS-RTATSLDLEWDNSE-----AEAQEYKVVYSTLAGEQ--YHEVLV-PKGIGPTTKT  162 (283)
T ss_dssp             ECC-CEEEEEECCCCCCEEEEEEE-ECSSCEEEEEECCS-----SCCSEEEEEEEETTCCC--CEEEEE-ECCSSSEEEE
T ss_pred             CCC-CeeEEEECCCCCCCceEEEe-cCCCeEEEEecCCC-----CCccEEEEEEEeCCCCc--ceEEEC-CCCCcccceE
Confidence            653 45566677889999999887 88999999999853     56889999887765432  234444 344   7899


Q ss_pred             EecccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcC
Q psy11701        466 EVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVK  545 (745)
Q Consensus       466 ~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~  545 (745)
                      ++.+|.+++.|.|+|.|.|..|.|.+.. +...+   .|.+|.++.+...+.+++.|+|++|   +|.|.+|.|+|+..+
T Consensus       163 ~i~~L~p~t~Y~~~V~A~n~~g~s~~~~-~~~~t---~~~~P~~l~~~~~~~~sv~l~W~~p---~~~i~~Y~v~~~~~~  235 (283)
T 1tdq_A          163 TLTDLVPGTEYGVGISAVMNSKQSIPAT-MNART---ELDSPRDLMVTASSETSISLIWTKA---SGPIDHYRITFTPSS  235 (283)
T ss_dssp             EECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CCCCCEEEEEEEECSSCEEEEEECC---CSCCSEEEEEEECSS
T ss_pred             EEecCCCCCEEEEEEEEEeCCCCCcceE-EEecC---CCCCCCccEEeEecCCEEEEEEeCC---CCcccEEEEEEEcCC
Confidence            9999999999999999999998876543 33333   3457789999999999999999986   468999999999765


Q ss_pred             CcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcce
Q psy11701        546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKY  596 (745)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~  596 (745)
                      +...  ..    .+ .....++.|.+|.|++.|.|+|.|.|..|.|+++..
T Consensus       236 ~~~~--~~----~~-~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~  279 (283)
T 1tdq_A          236 GISS--EV----TV-PRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV  279 (283)
T ss_dssp             SCCE--EE----EE-ESSCSEEEECCCCTTCCEEEEEEEEETTEECCCEEE
T ss_pred             CCee--EE----Ee-CCCccEEEECCCCCCCEEEEEEEEEcCCCCCcceee
Confidence            4321  11    12 456789999999999999999999999999998643

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.89  E-value=2.4e-21  Score=191.91  Aligned_cols=258  Identities=14%  Similarity=0.189  Sum_probs=191.0

Q ss_pred             ecCCCcEEE--ecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeE-EEcCCeEEEEecCCCCCCEEEEEEEEeCC
Q psy11701        311 TDQPEDYEV--EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF-VQSNDYSLTVTKSSELDSGQYTCRAQTEL  387 (745)
Q Consensus       311 ~~~p~~~~~--~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~c~a~n~~  387 (745)
                      +..|.++.+  .....+.|.|.....+...+.+.|...+....   .... .......+.+.++.....+.|++.|.|..
T Consensus        21 p~~P~~l~~~~~~~~sv~l~W~~p~~~~~~Y~v~~~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   97 (290)
T 3r8q_A           21 IPAPTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGP---MKEINLAPDSSSVVVSGLMVATKYEVSVYALKDT   97 (290)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCSSCCCEEEEEEEESSSSSC---CEEEEECTTCCEEEECSCCSSCEEEEEEEEEETT
T ss_pred             CCCCCceEEEECCCCEEEEEEeCCCCCeeEEEEEEEeCCCCCc---eEEEEcCCCccEEEeCCCCCCCEEEEEEEEEeCC
Confidence            345555544  34567889988764444457788776432111   1111 12234678999999999999999999988


Q ss_pred             ceEEEEEEEEEec--cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEE
Q psy11701        388 DFIEAQATLTVQV--PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTT  465 (745)
Q Consensus       388 g~~~~~~~l~v~~--pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~  465 (745)
                      |.+.... ..+..  .+.+|.++.+.. .+.+++.|.|+++     ++.+.+|.|+|+......  .....+ ......+
T Consensus        98 g~s~~s~-~~~~t~~~~~~P~~l~~~~-~~~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~~--~~~~~~-~~~~~~~  167 (290)
T 3r8q_A           98 LTSRPAQ-GVVTTLENVSPPRRARVTD-ATETTITISWRTK-----TETITGFQVDAVPANGQT--PIQRTI-KPDVRSY  167 (290)
T ss_dssp             EECCCEE-EEEECCCCCCCCEEEEEEE-ECSSCEEEEEECC-----SCCCCEEEEEEEESSSCC--CEEEEE-CTTCSEE
T ss_pred             CCCCCcc-eeEecCCCCCCCceeEEEE-cCCCeEEEEEeCC-----CCcccEEEEEEEECCCCc--ceEEec-CCCccEE
Confidence            8655442 22332  357888898887 8899999999984     356889999988765432  233444 5677889


Q ss_pred             EecccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcC
Q psy11701        466 EVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVK  545 (745)
Q Consensus       466 ~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~  545 (745)
                      +|.+|.+++.|.|+|.|.|..|.|.+.. +.+.+   .|.+|.++.+...+.+++.|+|++|.   |.+.+|.|+|+..+
T Consensus       168 ~i~~L~p~t~Y~~~V~A~n~~g~s~~~~-~~~~t---~p~~P~~l~~~~~~~~sv~l~W~~p~---~~~~~Y~v~~~~~~  240 (290)
T 3r8q_A          168 TITGLQPGTDYKIYLYTLNDNARSSPVV-IDAST---AIDAPSNLRFLATTPNSLLVSWQPPR---ARITGYIIKYEKPG  240 (290)
T ss_dssp             EECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CCCCCEEEEEEEEETTEEEEEEECCS---SCCCEEEEEEECTT
T ss_pred             EECCCCCCCEEEEEEEEEeCCcccCCEE-EEecC---CCCCCCccEEEeeCCCEEEEEEeCCC---CcccEEEEEEEeCC
Confidence            9999999999999999999999887643 44444   37778899999889999999999986   48999999999876


Q ss_pred             CcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701        546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE  593 (745)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~  593 (745)
                      ...+....     .......++.+.+|.|++.|.|+|.|.|..|.|.+
T Consensus       241 ~~~~~~~~-----~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p  283 (290)
T 3r8q_A          241 SPPREVVP-----RPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP  283 (290)
T ss_dssp             SCCEECSS-----CCCTTCCEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred             CCcceeEe-----ccCCCccEEEECCCCCCCEEEEEEEEEeCCCcCCc
Confidence            54332111     11456789999999999999999999999999987

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.89  E-value=3e-22  Score=204.20  Aligned_cols=306  Identities=12%  Similarity=0.082  Sum_probs=152.5

Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEeccCCCCCCceeEEeec-CceeEEEEEeCCC-CCcceeeeeEEEEEEeccCCCCcee
Q psy11701        376 SGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVID-AKKAVVSWNPVSP-QSLRGHFRGYKVQTWTEKDGEGSIR  453 (745)
Q Consensus       376 ~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P~~~~~~~~~~-~~~v~l~W~~~~~-~~~~~~i~~y~i~~~~~~~~~~~~~  453 (745)
                      .+.+...+.+..|..... .  ...+|.||.++.+.. .+ .+++.|+|+++.+ +..++.+..|+|+|+..+.  ..|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~-~--~~v~~~pP~nl~v~~-~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~--~~w~   82 (380)
T 3lb6_C            9 GCLYTFLISTTFGCTSSS-D--TEIKVNPPQDFEIVD-PGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGS--ETWK   82 (380)
T ss_dssp             -------------------------CCCCCEEEEEEC-CSSSSEEEEEEECCCC------CCCEEEEEEEETTC--SSCE
T ss_pred             hhhhhheeecccccccCC-c--ccccCCcCCceEEEe-cCcCceEEEEECCCCCccccccceEEEEEEECCCCC--Ccce
Confidence            455566666766644221 1  123578999999876 44 6889999999765 3356778999999987653  3455


Q ss_pred             EEEEccCceeEEEecccccCcceeEEEEEecC----CCCCCCCcceEEe---CCCC-CCCCCCceeEEEcCCceEEEEee
Q psy11701        454 ELIVNKGESTTTEVDKFVPASKNFARVLAFNG----AYNGPPSEIISFV---TPEG-VPGTVQSLEAIPLGSSAFYLKWV  525 (745)
Q Consensus       454 ~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~----~G~g~~S~~~~~~---t~~~-~P~~p~~~~~~~~~~~~i~l~W~  525 (745)
                      .+.. . ...  ...++..+..|+|+|+|.|.    .|.|.+|......   +.++ +|++|.++++...+.+++.++|+
T Consensus        83 ~~~~-~-~~~--~~~~~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~l~csW~  158 (380)
T 3lb6_C           83 TIIT-K-NLH--YKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWK  158 (380)
T ss_dssp             EEEE-S-SSE--EEEECCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTEEEEEEE
T ss_pred             EEEe-c-cEE--EEEeecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECCCcEEEEEEc
Confidence            5554 2 222  23355558999999999975    6777766544433   3444 46789999999999999999999


Q ss_pred             CCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeee--cCCCCCccEEEEEEEEecCCCCCCcceeeecccC
Q psy11701        526 KPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKL--AGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFK  603 (745)
Q Consensus       526 ~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~  603 (745)
                      ++.+. +..++|.|+|+..+...+..+....  ...+......+  .++.+++.|.|+|.|.|..|.+.++.........
T Consensus       159 p~~~~-~~~~~Y~l~y~~~~~~~~~~C~~~~--~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~s~~~~~~~~~~  235 (380)
T 3lb6_C          159 PGIGV-LLDTNYNLFYWYEGLDHALQCVDYI--KADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNI  235 (380)
T ss_dssp             CC-------CCEEEEEECTTCSSCEECSEEE--EC--CEEEEECCCCTTCSSSCEEEEEEEC-----CCCEEEEECGGGS
T ss_pred             CCCCC-CCCccEEEEEEECCCCccccCCCcc--ccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeeccccEEEcHHHc
Confidence            88753 5678999999876543222221100  11122223444  4678999999999999999987764433222221


Q ss_pred             CCC----CCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEE
Q psy11701        604 NPD----NVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVV  679 (745)
Q Consensus       604 ~~~----~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~  679 (745)
                      ..+    ++.+.....+++.|+|++|... ..+.+..|.|+|++.  +..|...                          
T Consensus       236 v~p~pP~~l~v~~~~~~~l~l~W~~P~~~-~~~~~l~Yev~y~~~--~~~w~~~--------------------------  286 (380)
T 3lb6_C          236 VKPLPPVYLTFTRESSCEIKLKWSIPLGP-IPARCFDYEIEIRED--DTTLVTA--------------------------  286 (380)
T ss_dssp             CCCCCCEEEEEC-------CEEEECCSSS-CCSTTEEEEECC----------CC--------------------------
T ss_pred             ccCCCCceEEEEEcCCCeEEEEECCCCCC-CCcceEEEEEEEEeC--CCCceEe--------------------------
Confidence            111    2222223456788899876643 224667888888753  1111100                          


Q ss_pred             EEeeeecCCCCeEEEEEecCCCcEEEecc-cccCCcceeEEEEecC-----cc-cCCCCcceEEeCCCCC
Q psy11701        680 QTWTEKDGEGSIRELIVNKGESTTTEVDK-FVPASKNFARVLAFNG-----AY-NGPPSEIISFVTPEGG  742 (745)
Q Consensus       680 a~~~~~~~~~~~~~~~~~~~~~~~~~i~~-L~p~~~Y~~~v~A~~~-----~G-~g~~s~~~~~~t~~~~  742 (745)
                                     .  ..  ..+.|.+ |+|++.|.|+|+|...     .| .|.||+++.|.|++..
T Consensus       287 ---------------~--~~--~~~~l~~~L~p~t~Y~~qVRa~~~~~~~~~g~WSeWS~~~~~~t~~~~  337 (380)
T 3lb6_C          287 ---------------T--VE--NETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLS  337 (380)
T ss_dssp             ---------------E--ES--SSCC------------CCEEEEECTTTCSSCCCCCCCCC---------
T ss_pred             ---------------c--cc--ceEEEeCccCCCcEEEEEEEEEEcccCCCCCCCCCCCCCEEEeCCCCC
Confidence                           0  01  1355778 9999999999999843     34 3788999999998653

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.89  E-value=1.6e-22  Score=193.06  Aligned_cols=194  Identities=21%  Similarity=0.311  Sum_probs=145.2

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      .+|++|.++++...+.+++.|+|++|   +|.+.+|.|+|+..+........     + ....+++.|.+|.|++.|.|+
T Consensus         4 ~p~~~P~~l~~~~~~~~si~l~W~~p---~g~i~~Y~v~~~~~~~~~~~~~~-----~-~~~~~~~~i~~L~p~t~Y~~~   74 (234)
T 3f7q_A            4 MDLGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGDSESEAHL-----L-DSKVPSVELTNLYPYCDYEMK   74 (234)
T ss_dssp             -CCCCCEEEEEEECSSSCEEEEEECC---SSCCCEEEEEEEETTSCGGGCEE-----E-EESSSEEEECSCCTTCEEEEE
T ss_pred             CCCCCCcceEEEEcCCCEEEEEEECC---CCccceEEEEEEECCCCccceEE-----E-cCCccEEEECCCCCCCEEEEE
Confidence            56789999999999999999999998   46899999999986543322111     1 356689999999999999999


Q ss_pred             EEEEecCCCCCCcceeeecccCCC----CCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccc
Q psy11701        582 LAGYTKAGDGAESKYLFYVPFKNP----DNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLD  657 (745)
Q Consensus       582 V~a~n~~G~g~~S~~~~~~~~~~~----~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~  657 (745)
                      |.|.|..|.|++|..+...+....    ..+.+.....+++.|+|+++.  ..+|.|.+|.|.|+..+.......     
T Consensus        75 V~A~n~~G~g~~s~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~--~~~g~i~~Y~v~~~~~~~~~~~~~-----  147 (234)
T 3f7q_A           75 VCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPA--ETNGEITAYEVCYGLVNDDNRPIG-----  147 (234)
T ss_dssp             EEEEETTEECCCCCCEEEECCCCCCCCCCCCEEEECSSSCEEEECCCCS--CCSSCCCEEEEEEEEBCTTSCBSS-----
T ss_pred             EEEEeCCCcCCCCCeEEEEcCCCCCCCCCccEEEEecCCEEEEEEcCCC--CCCCceeEEEEEEEECCCCCCccC-----
Confidence            999999999999877655443322    222333456788999999764  467899999999987643321000     


Q ss_pred             cccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcc-eEE
Q psy11701        658 WRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEI-ISF  736 (745)
Q Consensus       658 ~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~-~~~  736 (745)
                                                      ....+.+.....+++.|.+|.|++.|.|+|+|.|.+|.|++|++ +.+
T Consensus       148 --------------------------------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~  195 (234)
T 3f7q_A          148 --------------------------------PMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINL  195 (234)
T ss_dssp             --------------------------------CCEECCCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECG
T ss_pred             --------------------------------cceEEEecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEe
Confidence                                            00111111345678999999999999999999999999999984 888


Q ss_pred             eCCCCCc
Q psy11701        737 VTPEGGT  743 (745)
Q Consensus       737 ~t~~~~~  743 (745)
                      +|.++.+
T Consensus       196 ~T~~~~P  202 (234)
T 3f7q_A          196 ATQPKRP  202 (234)
T ss_dssp             GGSCCCC
T ss_pred             ecCCCCC
Confidence            8876654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.89  E-value=2.9e-22  Score=191.62  Aligned_cols=175  Identities=27%  Similarity=0.489  Sum_probs=142.7

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCe---EeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEE
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYS  117 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~  117 (745)
                      ....+.+|++++|.|.+.|.|.+.+.|+|++..+....++   .....+.+|.|.+++.+|+|.|+|.+.+..|... ..
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~-~~  105 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN-HT  105 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE-EE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCccc-cc
Confidence            7888999999999999999999999999999998765432   4445566899999999999999999999887765 66


Q ss_pred             EEEEEEec----CeEEe-cCceeEeeCCCeEEEEEEEeecCCCeEEEEe----CCEeccCCCCCCce--------eecCc
Q psy11701        118 IDLSVLAA----PYFTV-EPEFINAAEEETVTFECKASGLPEPEIHWVH----NGKPISQAPPNPRR--------KVGPN  180 (745)
Q Consensus       118 ~~l~V~~~----p~~~~-~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~----~g~~~~~~~~~~~~--------~~~~~  180 (745)
                      +.|.|...    |.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++    +|..+.........        ....+
T Consensus       106 ~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  185 (231)
T 3ojm_B          106 YHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE  185 (231)
T ss_dssp             EEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTT
T ss_pred             EEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCcc
Confidence            78888753    33322 3567788999999999999999999999999    77776533221111        11245


Q ss_pred             eEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        181 RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       181 ~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      .|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       186 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  221 (231)
T 3ojm_B          186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP  221 (231)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEec
Confidence            799999999999999999999999998889998875

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.89  E-value=4.1e-22  Score=191.84  Aligned_cols=176  Identities=28%  Similarity=0.464  Sum_probs=141.7

Q ss_pred             ccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC---eEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEE
Q psy11701         40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY  116 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~  116 (745)
                      +....+.+|++++|.|.+.|.|.+.+.|+|++..+....+   ........+|.|.+++.+|+|.|+|.+.+..+... .
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~-~  100 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR-Q  100 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE-E
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceE-E
Confidence            4578999999999999999999999999999999875433   34445567899999999999999999999887765 5


Q ss_pred             EEEEEEEe----cCeEE-ecCceeEeeCCCeEEEEEEEeecCCCeEEEEe----CCEeccCCCCCCce---------eec
Q psy11701        117 SIDLSVLA----APYFT-VEPEFINAAEEETVTFECKASGLPEPEIHWVH----NGKPISQAPPNPRR---------KVG  178 (745)
Q Consensus       117 ~~~l~V~~----~p~~~-~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~----~g~~~~~~~~~~~~---------~~~  178 (745)
                      .+.|.|..    +|.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++    +|..+.........         ...
T Consensus       101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  180 (241)
T 3grw_A          101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA  180 (241)
T ss_dssp             EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEE
T ss_pred             EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCC
Confidence            67788865    23333 34667788999999999999999999999999    88777543322111         113


Q ss_pred             CceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       179 ~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      .+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       181 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  218 (241)
T 3grw_A          181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG  218 (241)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred             ceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecC
Confidence            45799999999999999999999999999888888875

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.89  E-value=3.6e-22  Score=207.83  Aligned_cols=274  Identities=16%  Similarity=0.147  Sum_probs=170.4

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEE----EEccCceeEEEecccccCccee
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIREL----IVNKGESTTTEVDKFVPASKNF  477 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~L~~~~~Y~  477 (745)
                      +.+|+++.+.. . ..++.|+|+++..  .++.+. |.|+|+..+..  .|...    .+ ......++..+|.+++.|.
T Consensus         8 l~~P~nv~~~~-~-~~~~~L~W~p~~~--~~~~i~-Y~V~y~~~~~~--~W~~~~~c~~~-~~~~~~~t~~~l~~~~~Y~   79 (414)
T 3se4_A            8 LKSPQKVEVDI-I-DDNFILRWNRSDE--SVGNVT-FSFDYQKTGMD--NWIKLSGCQNI-TSTKCNFSSLKLNVYEEIK   79 (414)
T ss_dssp             ---CCCCCEEE-E-TTEEEEC------------CE-EEEEEEESSCC--CCEEEEEEEEE-SCSCEECCSSCCCTTSCEE
T ss_pred             CCCCceeEEEE-E-CCceEEEEcCCCC--CCCCeE-EEEEEEECCCC--CcEECcCccCC-CCCEEECCcccccCCCcEE
Confidence            46789999987 4 4578999999654  345666 99999875432  33322    22 3344555666789999999


Q ss_pred             EEEEEecCCCCCCCCcceEEeCCCC-CCCCCCceeEEEcCCceEEEEeeCCCCCC-------CceeeEEEEEEEcCCccc
Q psy11701        478 ARVLAFNGAYNGPPSEIISFVTPEG-VPGTVQSLEAIPLGSSAFYLKWVKPEQPN-------GVLMGYKIKYQSVKGTKV  549 (745)
Q Consensus       478 ~~V~a~n~~G~g~~S~~~~~~t~~~-~P~~p~~~~~~~~~~~~i~l~W~~p~~~~-------g~i~~Y~v~~~~~~~~~~  549 (745)
                      |||+|.| .|.+.++....+.+... .++|| .+.+... .++|.|+|. |...+       +.+.+|.|.|...+....
T Consensus        80 ~rV~A~n-~~~S~~s~~~~~~~~~~~~~~pP-~v~~~~~-~~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~y~~~~~~~~  155 (414)
T 3se4_A           80 LRIRAEK-ENTSSWYEVDSFTPFRKAQIGPP-EVHLEAE-DKAIVIHIS-PGTKDSVMWALDGLSFTYSLVIWKNSSGVE  155 (414)
T ss_dssp             EEEEEEE-TTEEEEEECCCBCHHHHCCCCCC-EEEEEEC-SSCEEEEEE-CSSSSCTTTGGGGSSCEEEEEEEETTTCCE
T ss_pred             EEEEEee-CCcCCCEecCceeecccceeCCC-eEEEEEc-CCEEEEEEE-cCCCCCceeeeecCcEEEEEEEEECCCCce
Confidence            9999999 55555543333332222 23344 4776654 468999999 65332       468899999988765432


Q ss_pred             CCcccccccccCCCcceeeecCCCCCccEEEEEEEEec--CCCCCCcceeeecccCCCC-----CCCCCCCCCcceeEEE
Q psy11701        550 GPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTK--AGDGAESKYLFYVPFKNPD-----NVEGRGSTPNNLVISW  622 (745)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~--~G~g~~S~~~~~~~~~~~~-----~~~~~~~~p~~~~v~W  622 (745)
                      ..       + ......+.|.+|.|++.|.|+|.|+|.  .|.|++|......+...++     ++..... ..++.|+|
T Consensus       156 ~~-------~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~-~~~~~l~W  226 (414)
T 3se4_A          156 ER-------I-ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQ-NQNYVLKW  226 (414)
T ss_dssp             EE-------E-EEECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEE-TTEEEEEE
T ss_pred             EE-------E-ecCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEe-cCCeEEEE
Confidence            11       1 234578999999999999999999994  7888888765443322111     1111111 24578899


Q ss_pred             eecCccccCCCcceEEEEEecc------C-CCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEE
Q psy11701        623 TAMPEIEHNAPHFKYRIFWRRH------N-TGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELI  695 (745)
Q Consensus       623 ~~~~~~~~~g~i~~y~i~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~  695 (745)
                      +++.   .+   .+|.|+|+..      + +...|.....                                .       
T Consensus       227 ~pp~---~~---~~Y~v~y~~~~~~~~~~~~~~~w~~~~~--------------------------------~-------  261 (414)
T 3se4_A          227 DYTY---AN---MTFQVQWLHAFLKRNPGNHLYKWKQIPD--------------------------------C-------  261 (414)
T ss_dssp             ECSS---SS---CEEEEEEEESGGGSCCCC--CCCCBCST--------------------------------T-------
T ss_pred             CCCC---CC---eEEEEEEEehhccccccccccCceECCC--------------------------------c-------
Confidence            8753   12   5899998853      0 1111211000                                0       


Q ss_pred             EecCCCcEEEec-ccccCCcceeEEEEecCcccCCCCcceEEeCCCCC
Q psy11701        696 VNKGESTTTEVD-KFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGG  742 (745)
Q Consensus       696 ~~~~~~~~~~i~-~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~~~  742 (745)
                       .....+.+.+. +|.+++.|.|+|+|.|+.|.|++|+.+.|.|.++.
T Consensus       262 -~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~t~~~~  308 (414)
T 3se4_A          262 -ENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQA  308 (414)
T ss_dssp             -TTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEETTCC-
T ss_pred             -cCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccccccchhcc
Confidence             01133455555 69999999999999999999999999999998764

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.89  E-value=3.2e-22  Score=181.47  Aligned_cols=165  Identities=18%  Similarity=0.237  Sum_probs=131.6

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCe-eEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQ-TIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~-v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      +++.+...|....+.+|++++|.|.+.+.|.+. +.|+|++..+.        ..+..|.|.+++.+|+|.|+|.+.+..
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~~~n~~   77 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS--------SQASSYFIDAATVNDSGEYRCQTNLST   77 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE--------SSCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEcc--------CCceEEEEeCCCcccCEEEEEEeeCCc
Confidence            445566788888999999999999999888775 88999998876        345689999999999999999998754


Q ss_pred             eeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecCceEEEccCCC
Q psy11701        111 GEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK  189 (745)
Q Consensus       111 g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~  189 (745)
                      +   +..+.|.|..++.+... ....+.+|+.+.|.|.+.+.+++ .+.|+|+|..+..       ......|.|.+++.
T Consensus        78 ~---s~~~~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~-------~~~~~~L~i~~v~~  146 (175)
T 1fnl_A           78 L---SDPVQLEVHIGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-------FHHNSDFHIPKATL  146 (175)
T ss_dssp             C---CCCEEEEEECSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-------EEECCCEEESSCCG
T ss_pred             c---cccEEEEEeCCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC-------CCCCCEEEEcccCh
Confidence            4   24577888766654443 44678899999999999876654 9999999998742       23467899999999


Q ss_pred             CCCEEEEEEEEeCCce-EEEEEEEEEe
Q psy11701        190 SDTGNYGCNATNSLGY-VYKDVYVNVL  215 (745)
Q Consensus       190 ~d~G~Y~C~~~~~~g~-~~~~~~l~v~  215 (745)
                      +|+|.|+|.|.|..+. .+..+.|.|.
T Consensus       147 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          147 KDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             hhCeEEEEEEEcCCCCccCccEEEEEe
Confidence            9999999999997654 3334566664

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.89  E-value=5.7e-22  Score=186.71  Aligned_cols=191  Identities=26%  Similarity=0.484  Sum_probs=149.0

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCC---ceeecCceE-----EEccCCCCCCEEE
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP---RRKVGPNRI-----TIENLRKSDTGNY  195 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~---~~~~~~~~L-----~i~~v~~~d~G~Y  195 (745)
                      .+|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+.......   +....++.+     .|.+++.+|+|.|
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   87 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence            37788888999999999999999999999999999999999887543221   222334444     4456799999999


Q ss_pred             EEEEEeCCceE-EEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEE-eecCCCeEEEeeCCEEccCc-eEEEeecCcE
Q psy11701        196 GCNATNSLGYV-YKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELTGG-RYTILETGDL  272 (745)
Q Consensus       196 ~C~~~~~~g~~-~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~l  272 (745)
                      +|.+.|..|.. ...+.|.|...++.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+... ......++.|
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L  167 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKL  167 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEE
T ss_pred             EEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeE
Confidence            99999998865 345777777667777777888889999999999998 88899999999999887632 2233456789


Q ss_pred             EEcccCCCCCEEEEEEEEeCCceEEE-EEEEEEeecceeecCC
Q psy11701        273 KITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKEHTHITDQP  314 (745)
Q Consensus       273 ~i~~~~~~d~G~Y~C~~~n~~g~~~~-~~~l~v~~~p~~~~~p  314 (745)
                      .|.++..+|.|.|+|.|.|..|.... .+.|.|..+|.+...|
T Consensus       168 ~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P  210 (212)
T 2v9r_A          168 MITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA  210 (212)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--------
T ss_pred             EEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhhc
Confidence            99999999999999999999998654 4899999888776555

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.89  E-value=4.4e-22  Score=187.46  Aligned_cols=169  Identities=26%  Similarity=0.417  Sum_probs=136.1

Q ss_pred             EecCCcEEEEEEEeec-CCCeeEEEECCEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEE
Q psy11701         45 ALRNKKVELFCIFGGT-PLPQTIWSKDGVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLS  121 (745)
Q Consensus        45 v~~G~~~~l~C~~~g~-p~~~v~W~~~~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~  121 (745)
                      ..+|+.+.|.|.+.+. |.+.+.|+|+|.+|....++.+...+  ..|.|.+++.+|+|.|+|.+.+..|... ..+.|.
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~-~~~~l~   92 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ-KTVDLS   92 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEE-EEEEEC
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceE-EEEEEE
Confidence            3467888899988775 58899999999999988887654444  4699999999999999999999877655 556665


Q ss_pred             EEe--------------------cC-eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec--
Q psy11701        122 VLA--------------------AP-YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG--  178 (745)
Q Consensus       122 V~~--------------------~p-~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~--  178 (745)
                      |..                    .| .+...|....+.+|+.+.|.|.+.+.|.+.+.|+|+|..+...... .....  
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~-~~~~~~~  171 (212)
T 2r15_A           93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHC-NLKFEAG  171 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSE-EEEEETT
T ss_pred             EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCE-EEEEcCC
Confidence            542                    33 3444567788999999999999999999999999999998754321 11111  


Q ss_pred             -CceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        179 -PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       179 -~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                       ...|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       172 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          172 RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence             2389999999999999999999999998888888886

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.89  E-value=8.3e-22  Score=182.65  Aligned_cols=176  Identities=23%  Similarity=0.433  Sum_probs=145.4

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCCCC-Cceee-c--------CceEEEccCCCCCCE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPN-PRRKV-G--------PNRITIENLRKSDTG  193 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~~-~~~~~-~--------~~~L~i~~v~~~d~G  193 (745)
                      +|.|...|....+.+|+++.|.|.+. +.|.+.+.|+|+|..+...... .+... .        .+.|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            67888999999999999999999998 8999999999999998754211 11111 1        358999999999999


Q ss_pred             EEEEEEEeCCceEEEE-EEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC-eEEEeeCCEEccCceEEEeecCc
Q psy11701        194 NYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETGD  271 (745)
Q Consensus       194 ~Y~C~~~~~~g~~~~~-~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~  271 (745)
                      .|+|.+.+..+..... +.|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+ .+.|++++..+...... ...+.
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-~~~~~  159 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEG-LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-GPQRS  159 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECC-SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-SCCEE
T ss_pred             EEEEEEEeCCCceecccEEEEEec-CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-CCCCe
Confidence            9999999988775544 7788764 7888888888899999999999999999999 99999999887543211 34557


Q ss_pred             EEEcccCCCCCEEEEEEEEeCCceEE-EEEEEEE
Q psy11701        272 LKITDVAFADSGEYTCFARNKLGTAQ-GSGSLTV  304 (745)
Q Consensus       272 l~i~~~~~~d~G~Y~C~~~n~~g~~~-~~~~l~v  304 (745)
                      |.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       160 L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          160 LHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            9999987  78999999999999885 6788887

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.89  E-value=1.3e-21  Score=180.65  Aligned_cols=179  Identities=22%  Similarity=0.364  Sum_probs=145.2

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecC-CCeEEEEe-CCEeccCCCCCCcee---ecCceEEEccCCCCCCEEEEEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLP-EPEIHWVH-NGKPISQAPPNPRRK---VGPNRITIENLRKSDTGNYGCNA  199 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~-~g~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~~  199 (745)
                      ++.+...|....+.+|+++.|.|.+.+.+ .+.+.|++ +|..+..........   .....|.|.+++.+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            45677788888999999999999999876 78999999 888776432211111   23468999999999999999999


Q ss_pred             EeCC-ceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEcc---CceEEEeecCcEEEc
Q psy11701        200 TNSL-GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT---GGRYTILETGDLKIT  275 (745)
Q Consensus       200 ~~~~-g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~---~~~~~~~~~~~l~i~  275 (745)
                      .+.. +.....+.|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.   ..++....++.|.|.
T Consensus        82 ~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~  160 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR  160 (191)
T ss_dssp             EETTTEEEEEEEEEEEEC-CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEET
T ss_pred             EcCCCcceEEEEEEEeec-CceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEEC
Confidence            9998 4556667777774 7888888888889999999999999999999999999998874   346666677799999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        276 DVAFADSGEYTCFARNKLGTAQGSGSLTV  304 (745)
Q Consensus       276 ~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v  304 (745)
                      ++...|+|.|+|.|.|..+.......+.|
T Consensus       161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          161 GIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             TCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            99999999999999998865544444443

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.88  E-value=1.2e-21  Score=182.00  Aligned_cols=183  Identities=26%  Similarity=0.412  Sum_probs=147.6

Q ss_pred             EEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec--CceEEEccCCCCCCEEEEEEE
Q psy11701        122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG--PNRITIENLRKSDTGNYGCNA  199 (745)
Q Consensus       122 V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~  199 (745)
                      +..+|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+...... .....  ...|.|.++..+|+|.|+|.+
T Consensus         4 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (197)
T 3lcy_A            4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKY-KMSSDGRTHTLTVMTEEQEDEGVYTCIA   82 (197)
T ss_dssp             CCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSE-EEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred             cCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccE-EEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence            345788888899999999999999999999999999999999988643211 11111  227999999999999999999


Q ss_pred             EeCCceEEEEEEEEEeecCCeeee---CCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCc-eEEEeec---CcE
Q psy11701        200 TNSLGYVYKDVYVNVLAHAPEITE---APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-RYTILET---GDL  272 (745)
Q Consensus       200 ~~~~g~~~~~~~l~v~~~~p~~~~---~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~---~~l  272 (745)
                      .|..+.....+.+.|.. +|.+..   .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ++.....   +.|
T Consensus        83 ~n~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L  161 (197)
T 3lcy_A           83 TNEVGEVETSSKLLLQA-TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHL  161 (197)
T ss_dssp             ECSSCEEEEEEEEEEEE-EEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEE
T ss_pred             ECCCCceeEEEEEEEEc-CCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEE
Confidence            99999888888888875 333332   234456789999999999999999999999999988543 4444333   469


Q ss_pred             EEcccCC-CCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        273 KITDVAF-ADSGEYTCFARNKLGTAQGSGSLTVKE  306 (745)
Q Consensus       273 ~i~~~~~-~d~G~Y~C~~~n~~g~~~~~~~l~v~~  306 (745)
                      .|.++.. +|+|.|+|.|.|..|.....+.|.|.+
T Consensus       162 ~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          162 VMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             EESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            9999985 899999999999999998888888864

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.88  E-value=2.2e-22  Score=210.13  Aligned_cols=219  Identities=17%  Similarity=0.234  Sum_probs=151.2

Q ss_pred             cceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCC-ceeeEEEEEEEcCCc--cc-
Q psy11701        474 SKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGT--KV-  549 (745)
Q Consensus       474 ~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g-~i~~Y~v~~~~~~~~--~~-  549 (745)
                      ....+.|.|.|..|.++........+  .+|++|.++.. .++.++|.|+|++|.+.+| +|.+|.|+|+.....  .+ 
T Consensus       306 ~~Gs~~C~C~ng~~ra~~d~~~~~ct--~pPsaP~nl~~-~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~~~~  382 (536)
T 3fl7_A          306 PEGATSCECEEGFFRAPQDPASMPCT--RPPSAPHYLTA-VGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECG  382 (536)
T ss_dssp             CTTCSSCEECTTCBCCTTCCTTSCCB--CCCCCBSCEEE-ECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CCCEE
T ss_pred             CCCccEEEEeccccccCCCccccccc--cCCCcccceEE-EecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCCccc
Confidence            34556788999998876544332222  47899999954 6889999999999988777 799999999974321  11 


Q ss_pred             --CCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCC---CCcceeeecccC-CCCCCCCCCCCCcceeEEEe
Q psy11701        550 --GPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG---AESKYLFYVPFK-NPDNVEGRGSTPNNLVISWT  623 (745)
Q Consensus       550 --~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g---~~S~~~~~~~~~-~~~~~~~~~~~p~~~~v~W~  623 (745)
                        ...............++++|.+|.|++.|.|+|.|.|..|.+   +.+..+...+.. .|..+......+++|.|+|+
T Consensus       383 ~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~Ps~~~~~~~s~tSV~LsW~  462 (536)
T 3fl7_A          383 PCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWS  462 (536)
T ss_dssp             ECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCCCEEEEEECCC-CCEEEEE
T ss_pred             ccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeecccCCCCCceeeccCCeEEEEEE
Confidence              000000000113456899999999999999999999999984   344444333222 22222233456789999999


Q ss_pred             ecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcE
Q psy11701        624 AMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTT  703 (745)
Q Consensus       624 ~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~  703 (745)
                      +|  ...+|.|.+|.|.|+..+..  . .                                         ....++..++
T Consensus       463 pP--~~~ng~I~~Y~V~y~~~~~~--~-~-----------------------------------------~~~v~~~~ts  496 (536)
T 3fl7_A          463 IP--PPQQSRVWKYEVTYRKKGDS--N-S-----------------------------------------YNVRRTEGFS  496 (536)
T ss_dssp             CC--TTTTTTCSEEEEEEEEC--C--C-C-----------------------------------------CEEEEESSSE
T ss_pred             CC--cCCCCcccEEEEEEEECCCC--c-e-----------------------------------------EEEEcCCCCE
Confidence            76  45788999999999865221  0 0                                         0011457789


Q ss_pred             EEecccccCCcceeEEEEecCcccCCCCcceEEeCCCC
Q psy11701        704 TEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG  741 (745)
Q Consensus       704 ~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~~  741 (745)
                      +.|.+|+|++.|.|+|+|.|.+|.|++|+++.|+|..+
T Consensus       497 ~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~T~~~  534 (536)
T 3fl7_A          497 VTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSP  534 (536)
T ss_dssp             EECCSCCSSCEEEEEEEEECC---CEECCCEEEECCC-
T ss_pred             EEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEEeCCC
Confidence            99999999999999999999999999999999999643

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.88  E-value=1.9e-21  Score=179.30  Aligned_cols=180  Identities=24%  Similarity=0.459  Sum_probs=140.2

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+............++.|.|.+++.+|+|.|+|.+.+..+
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   81 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR   81 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTT
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCC
Confidence            57788888999999999999999999989999999999988765433333344567899999999999999999998875


Q ss_pred             eEE--EEEEEEEeecCCeeeeCCC--ceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCc-eEEEe-ecCcEEEcccC
Q psy11701        205 YVY--KDVYVNVLAHAPEITEAPK--DEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-RYTIL-ETGDLKITDVA  278 (745)
Q Consensus       205 ~~~--~~~~l~v~~~~p~~~~~~~--~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~-~~~~l~i~~~~  278 (745)
                      ...  ..+.+.+.. +|.+...+.  ...+.+|+.++|.|.+.+.|.+.+.|++++..+... ++... ..+.|.|.++.
T Consensus        82 ~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~  160 (189)
T 2v5t_A           82 GEIDFRDIIVIVNV-PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII  160 (189)
T ss_dssp             TEEEEEEEEEEEEE-EEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCC
T ss_pred             CceEEEEEEEEecC-CCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCC
Confidence            433  345555554 566655444  345678999999999999999999999999987643 33332 24579999999


Q ss_pred             CCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        279 FADSGEYTCFARNKLGTAQGSGSLTVK  305 (745)
Q Consensus       279 ~~d~G~Y~C~~~n~~g~~~~~~~l~v~  305 (745)
                      .+|+|.|+|.|.|..|.....+.|.|.
T Consensus       161 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          161 NSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             hhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            999999999999999998888888775

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.88  E-value=4e-21  Score=200.26  Aligned_cols=311  Identities=13%  Similarity=0.186  Sum_probs=190.9

Q ss_pred             CCCCCEEEEEEEEeCCceEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCc----ceeeeeEEEEEEeccC
Q psy11701        372 SELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSL----RGHFRGYKVQTWTEKD  447 (745)
Q Consensus       372 ~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~----~~~i~~y~i~~~~~~~  447 (745)
                      ...+.+.|...+.|..|. ...+.+.-...|.||.++.+.. .+ ..+.|+|+++.....    .+..+.|+|+|+....
T Consensus        80 ~~~~~~~~~v~~~~~~~~-~~~~~~~~~v~p~pP~~l~v~~-~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~~  156 (419)
T 2gys_A           80 VVTDVDYFSFQPDRPLGT-RLTVTLTQHVQPPEPRDLQIST-DQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQD  156 (419)
T ss_dssp             CTTCEEEEEEEESSCCCE-EEEEEGGGSBCCCCCEEEEEEE-ET-TEEEEEEECCC-----CCSCGGGEEEEEEEEETTS
T ss_pred             eeecccEEEEeCCccccc-cceEcHHHcccCCCCCceEEEe-cC-CeEEEEECCCccccccchhccCceEEEEEEccCCC
Confidence            334455666666566553 2222222235789999999876 44 699999999765432    1356889999998763


Q ss_pred             CCCceeEEEEccCceeEEEec--ccccCcceeEEEEEecCC---CCC---CCCcceEEeCCCCCCCCCCceeEEEcCCce
Q psy11701        448 GEGSIRELIVNKGESTTTEVD--KFVPASKNFARVLAFNGA---YNG---PPSEIISFVTPEGVPGTVQSLEAIPLGSSA  519 (745)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~i~--~L~~~~~Y~~~V~a~n~~---G~g---~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~  519 (745)
                      ...... . + ......+.+.  +|.|++.|+|+|+|.+..   +.|   ++|..+.+.+.++.|.+|.++.+...+.+.
T Consensus       157 ~w~~~~-~-~-~~~~~~~~~~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~~~~p~~l~c~~~~~~~  233 (419)
T 2gys_A          157 SWEDAA-I-L-LSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAV  233 (419)
T ss_dssp             CSTTCE-E-E-EESSSEEEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCCTTSCEEEEEEECSSSE
T ss_pred             Chhhee-e-e-cccceEEEechhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeeccccccCCCceEEEEECCceE
Confidence            222222 2 1 1223444555  899999999999999964   334   446778899998889999999999989999


Q ss_pred             EEEEeeCCCCCCCceeeEEEEEEEcCCc------ccCCcccccccccCC------CcceeeecCCCCCccEEEEEEEEec
Q psy11701        520 FYLKWVKPEQPNGVLMGYKIKYQSVKGT------KVGPLLERLPYISDP------TTTSAKLAGLEPSTKYRIHLAGYTK  587 (745)
Q Consensus       520 i~l~W~~p~~~~g~i~~Y~v~~~~~~~~------~~~~~~~~~~~~~~~------~~~~~~l~~L~p~t~Y~~~V~a~n~  587 (745)
                      |.+.|+++....+. .+|.|+|+.....      .........  ....      ....+.+.+|.+++.|.|+|.|.+.
T Consensus       234 l~c~W~~~~~~~~~-~~y~l~y~~~~~~g~~~~~~~~~C~~~~--~~~~~~~~~~~~c~~~~~~l~~~~~y~i~V~a~~~  310 (419)
T 2gys_A          234 LSCSWEVRKEVASS-VSFGLFYKPSPDAGSAVLLREEECSPVL--REGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRA  310 (419)
T ss_dssp             EEEEEEEEHHHHTT-CCEEEEEECC-----CCCCCCEECCCEE--EECCTTTEEEEEEEEECSCTTTCCEEEEEEEECCC
T ss_pred             EEeEEECCCCCCCc-eeEEEEEEecCccccccCcccccCCCcc--cccCCCcceeEEeEEECccCCccCEEEEEEEEccC
Confidence            99999986322222 5699999865321      011100000  0011      1235778899999999999999754


Q ss_pred             CCCCCCcceeeecccCCCCCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEecc
Q psy11701        588 AGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLAN  667 (745)
Q Consensus       588 ~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (745)
                      .|.-.++..   +. ..++.+.+.. ..+.+.|+|++|.....+ .+..|.|+|+..+.  .|...              
T Consensus       311 ~~~~~~~~~---v~-p~PP~l~v~~-~~~~l~l~W~~P~~~~~~-~~l~Yev~y~~~~~--~w~~~--------------  368 (419)
T 2gys_A          311 EKHIKSSVN---IQ-MAPPSLQVTK-DGDSYSLRWETMKMRYEH-IDHTFEIQYRKDTA--TWKDS--------------  368 (419)
T ss_dssp             CEEEEGGGS---BC-CCCCEEEEC----CCCEEEEEC---------CEEEEEEEECSSS--CSTTS--------------
T ss_pred             CccccceEE---EE-ECCCCeEEEE-eCCeEEEEECCCcccccc-cceEEEEEEEcCCC--Cccee--------------
Confidence            442111111   11 1111122222 257889999887542222 45799999986521  11110              


Q ss_pred             CCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcc-----cCCCCcceEEeCC
Q psy11701        668 QPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAY-----NGPPSEIISFVTP  739 (745)
Q Consensus       668 l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G-----~g~~s~~~~~~t~  739 (745)
                                              ....+ . +.+++.|.+|+|++.|.|+|+|.+.+|     .|.||+++.|+|+
T Consensus       369 ------------------------~~~~~-~-~~~~~~l~~L~p~t~Y~~qVRa~~~~g~~~G~wS~WS~~~~~~t~  419 (419)
T 2gys_A          369 ------------------------KTETL-Q-NAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDTE  419 (419)
T ss_dssp             ------------------------CEEEE-E-SCSEEECCCCCSSCCCEEEEEEEECCTTCCBCCCCCCCCEECCC-
T ss_pred             ------------------------ecccc-c-cccEEEeccCCCCCeEEEEEEEEEcCCCCCCccCCCCCCeEeeCC
Confidence                                    00011 1 567899999999999999999999763     3488899999874

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.88  E-value=9.4e-22  Score=195.04  Aligned_cols=217  Identities=16%  Similarity=0.210  Sum_probs=164.1

Q ss_pred             EecCCCCCCEEEEEEEEeCCceEEEEEEEEEec---cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEe
Q psy11701        368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQV---PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWT  444 (745)
Q Consensus       368 i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~---pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~  444 (745)
                      +..+.....+.+++.|.|..|.+..........   ++.+|.++.+.. . ..++.|+|+++..     .+.+|.|+|+.
T Consensus        65 ~~~l~p~t~Y~~~V~A~n~~G~s~~s~~~~~~~~~~~~~p~~~~~~~~-~-~~si~l~W~~p~~-----~i~~Y~v~~~~  137 (290)
T 3l5i_A           65 LTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFP-K-DNMLWVEWTTPRE-----SVKKYILEWCV  137 (290)
T ss_dssp             EEEEECSSCEEEEEEEEESSCBCCCEEEEECCTTCCCCCCCEEEEEEE-E-TTEEEEEEECCSS-----CCCEEEEEEEE
T ss_pred             EEEEcCCceEEEEEEEEcCCCCCCCceEEeecccccCCCccceeEEEe-C-CCeEEEEEeCCCC-----CCCcEEEEEEE
Confidence            344556788999999999998765443222222   455566676655 3 4799999998532     68899999887


Q ss_pred             ccCCCCc-eeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEE
Q psy11701        445 EKDGEGS-IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLK  523 (745)
Q Consensus       445 ~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~  523 (745)
                      ....... .....+.......+.+.+|.+++.|.|+|.|.|..|.|.+ ..+.+.|.+.+|..|+++.+...+.++|.|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~-~~~~~~t~~~~P~~~p~~~~~~~~~~sv~l~  216 (290)
T 3l5i_A          138 LSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP-ESIKAYLKQAPPSKGPTVRTKKVGKNEAVLE  216 (290)
T ss_dssp             ECSSSCCCCEEEEEETTCSEEECCSCCCTTCEEEEEEEEEETTEECCC-EEEEEESSCCCCSSCCCEEEEEECSSCEEEE
T ss_pred             CCCCCCCCcCeEEccCCCcceEEecCcCCccEEEEEEEEEeCCccccc-EEEEeEccccCCCCCCeeeEeeccCCEEEEE
Confidence            6654321 1122222566778889999999999999999999999984 5566778888998878999988999999999


Q ss_pred             eeCC--CCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        524 WVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       524 W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      |+++  .+.+|.|.+|.|+|+..++.... ..     + ....++++|.+|.|++.|.|+|.|.|.+| |++|..+.+.
T Consensus       217 W~~~~~~~~~g~i~~Y~v~~~~~~~~~~~-~~-----~-~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~~~~~  287 (290)
T 3l5i_A          217 WDQLPVDVQNGFIRNYTIFYRTIIGNETA-VN-----V-DSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFTFT  287 (290)
T ss_dssp             ECCCCHHHHSSCCCEEEEEEEETTSCCEE-EE-----E-ETTCSEEEECSCCTTCEEEEEEEEEETTE-EEECCCEEEE
T ss_pred             EcCCChhccCCEEEEEEEEEEeCCCCeEE-EE-----e-CCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCceEee
Confidence            9954  35688999999999987543211 11     2 55678999999999999999999999999 8777665444

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.88  E-value=2.2e-22  Score=182.86  Aligned_cols=165  Identities=16%  Similarity=0.215  Sum_probs=129.4

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      ++.+...|....+.+|++++|.|.+.+.+.+ .+.|+|++..+.        ..+.+|.|.+++.+|+|.|+|.+.+..+
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   75 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE--------ETNSSLNIVNAKFEDSGEYKCQHQQVNE   75 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECS--------CCSSEEEECSCCGGGCEEEEEECTTSSC
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECC--------CCceEEEEeccceecCEEEEEEcCCccc
Confidence            4455677888899999999999999888775 799999999886        3466899999999999999999987554


Q ss_pred             eeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCC
Q psy11701        112 EAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS  190 (745)
Q Consensus       112 ~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~  190 (745)
                      .   ..+.|.|..++.+... ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+...       ...+.|.|.++..+
T Consensus        76 s---~~~~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-------~~~~~L~i~~v~~~  144 (176)
T 1f2q_A           76 S---EPVYLEVFSDWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-------YENHNISITNATVE  144 (176)
T ss_dssp             C---CCEEEEEECSSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-------CCSSEEEESSCCGG
T ss_pred             c---ccEEEEEeCcceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-------cCCCeEEECCCCcc
Confidence            3   3467777755544433 445788999999999994 5666799999999988522       23578999999999


Q ss_pred             CCEEEEEEEEeCCce-EEEEEEEEEee
Q psy11701        191 DTGNYGCNATNSLGY-VYKDVYVNVLA  216 (745)
Q Consensus       191 d~G~Y~C~~~~~~g~-~~~~~~l~v~~  216 (745)
                      |+|.|+|.|.|..+. ....+.|.|..
T Consensus       145 d~G~Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          145 DSGTYYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cCEEEEEEEEeCCcceEecCEEEEEec
Confidence            999999999997544 33447777764

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.88  E-value=6.7e-22  Score=186.17  Aligned_cols=191  Identities=18%  Similarity=0.186  Sum_probs=144.9

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEE--E---------ccCceeEEEeccc
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI--V---------NKGESTTTEVDKF  470 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~--~---------~~~~~~~~~i~~L  470 (745)
                      +.+|.++.+.. .+.+++.|+|+++..  .++.+.+|.|+|+..+.. ..+..+.  +         .......+++.+|
T Consensus         2 ~~pP~~~~~~~-~~~~sv~l~W~~p~~--~~~~i~~Y~v~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L   77 (214)
T 2ibg_A            2 TYPPTPPNVTR-LSDESVMLRWMVPRN--DGLPIVIFKVQYRMVGKR-KNWQTTNDNIPYGKPKWNSELGKSFTASVTDL   77 (214)
T ss_dssp             CCCCCCCEEEE-EETTEEEEEEEEECC--SSCCEEEEEEEEEESSSS-CCCEECSCCEECCSSSCSSSSEEEEEEEECSC
T ss_pred             CCCCCCCEeeE-ecCCEEEEEEECCCC--CCCCceEEEEEEEECCCC-CcCcccccccCccccccccccCcceeEEecCC
Confidence            35777777777 789999999998643  357899999998875431 2222211  0         0135678899999


Q ss_pred             ccCcceeEEEEEecCCCCCCCCc-ceEEeCCCC----CCCCCCceeEEEcCCceEEEEeeCCC-CCCCceeeEEEEEEEc
Q psy11701        471 VPASKNFARVLAFNGAYNGPPSE-IISFVTPEG----VPGTVQSLEAIPLGSSAFYLKWVKPE-QPNGVLMGYKIKYQSV  544 (745)
Q Consensus       471 ~~~~~Y~~~V~a~n~~G~g~~S~-~~~~~t~~~----~P~~p~~~~~~~~~~~~i~l~W~~p~-~~~g~i~~Y~v~~~~~  544 (745)
                      .+++.|.|+|.|.|..|.|..+. ...+.+...    +|.+|.++.+...+.++|.|+|++|. +.++.|.+|.|+|+..
T Consensus        78 ~p~t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~  157 (214)
T 2ibg_A           78 KPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPS  157 (214)
T ss_dssp             CTTCEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEET
T ss_pred             cCCCEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCCccCCCCcceEEEEEEEC
Confidence            99999999999999999877665 333444333    45678899998889999999999997 5678999999999987


Q ss_pred             CC-cccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        545 KG-TKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       545 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      +. ..+....     +......+++|.+|.|++.|.|+|.|+|..|.|++|..+...+
T Consensus       158 ~~~~~~~~~~-----~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  210 (214)
T 2ibg_A          158 SSAGEYFKAT-----IEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT  210 (214)
T ss_dssp             TCCSCCEEEE-----EECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEEC
T ss_pred             CCCcceEEee-----ccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEe
Confidence            65 2222211     2244468999999999999999999999999999998775553

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.88  E-value=1.7e-22  Score=189.82  Aligned_cols=180  Identities=19%  Similarity=0.202  Sum_probs=131.6

Q ss_pred             eccceeEecC--CcEEEEEEEeecCCCeeEEEE---CCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         39 TRKKEVALRN--KKVELFCIFGGTPLPQTIWSK---DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        39 ~~~~~~v~~G--~~~~l~C~~~g~p~~~v~W~~---~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      .|..+.+.+|  ++++|.|.+.+ |.+.++|++   |+..+..+.++..+. ...|.|.+++.+|+|.|+|.|.+..+..
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~-~~~l~I~~v~~~D~G~Y~C~a~n~~~~~   90 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDS-KKGFTIPSYMISYAGMVFCEAKINDESY   90 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEET-TTEEEEEGGGTTTCSEEEEEEC----CE
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccC-CccEEEccCChhcCceEEEEEEECCeeE
Confidence            4578899999  99999999986 778999988   477777665555433 4579999999999999999998854444


Q ss_pred             EEEEEEEEEEe--cCeEEecCce-eEeeCCCeEEEEEEEeecCC--CeEEEEeCCEeccCCCC-CCc--------eeecC
Q psy11701        114 KSYSIDLSVLA--APYFTVEPEF-INAAEEETVTFECKASGLPE--PEIHWVHNGKPISQAPP-NPR--------RKVGP  179 (745)
Q Consensus       114 ~~~~~~l~V~~--~p~~~~~~~~-~~v~~G~~~~l~C~~~~~p~--~~v~W~~~g~~~~~~~~-~~~--------~~~~~  179 (745)
                      .+..+.|.|..  +|.+...+.. ..+.+|++++|.|.+.+.|.  +.+.|+++|..+..... ...        .....
T Consensus        91 ~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  170 (213)
T 2x1w_L           91 QSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL  170 (213)
T ss_dssp             ECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEE
T ss_pred             EEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeee
Confidence            43446677743  4455555544 48999999999999998554  58999999876432110 000        01223


Q ss_pred             ceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCee
Q psy11701        180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI  221 (745)
Q Consensus       180 ~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~  221 (745)
                      +.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.. +|.|
T Consensus       171 ~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-~p~i  211 (213)
T 2x1w_L          171 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-DPIE  211 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-----
T ss_pred             EEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec-cccc
Confidence            5799999999999999999999999999899999985 4433

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.88  E-value=8e-21  Score=203.44  Aligned_cols=273  Identities=15%  Similarity=0.196  Sum_probs=172.4

Q ss_pred             eceEEEEEEecccCCcccCCCCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCC-CCCeEeccCC--
Q psy11701         12 GNRILLNVIATGISASQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINP-SDRISQGNYG--   86 (745)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~-~~~~~~~~~~--   86 (745)
                      +..+.|+|...      ...+|.++...+......+|+.++|.|.+.|. |.+ +|.|++++..... .........+  
T Consensus       120 ~~~~~L~V~~~------~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~  193 (512)
T 1zvo_C          120 GQGTTVHVSSA------PTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYY  193 (512)
T ss_pred             cCceEEEeccc------CCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCE
Confidence            45577777732      22356555444433212357999999999887 765 8999997643210 0000111111  


Q ss_pred             ---cEEEEccCCCCCCEEEEEEEEeCCeeeEEEE----------EEEEEEe-----------------------------
Q psy11701         87 ---KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYS----------IDLSVLA-----------------------------  124 (745)
Q Consensus        87 ---~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~----------~~l~V~~-----------------------------  124 (745)
                         +.|.|.....+ .|.|+|.|.+..+......          ..|.+..                             
T Consensus       194 ~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~  272 (512)
T 1zvo_C          194 MTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKK  272 (512)
T ss_pred             EEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCccccccee
Confidence               35889888777 8999999999876544221          1233332                             


Q ss_pred             -----------------------cCeEE-ecCceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCEeccCCCCCCce-e-
Q psy11701        125 -----------------------APYFT-VEPEFINAAEEETVTFECKASGL-PE-PEIHWVHNGKPISQAPPNPRR-K-  176 (745)
Q Consensus       125 -----------------------~p~~~-~~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~~~~~~~~~-~-  176 (745)
                                             +|.+. ..|....+.+|+.++|.|.+.|. |. ..|+|+|+|..+......... . 
T Consensus       273 ~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~  352 (512)
T 1zvo_C          273 KEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERH  352 (512)
T ss_pred             ccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecC
Confidence                                   23332 23344456789999999999885 42 499999999986521111111 1 


Q ss_pred             -----ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe-----ecCCeeeeCCCceEEecCceEE-EEEEEeec
Q psy11701        177 -----VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL-----AHAPEITEAPKDEYTVDGKTVV-LTCRVFGA  245 (745)
Q Consensus       177 -----~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~-----~~~p~~~~~~~~~~v~~g~~~~-l~C~~~~~  245 (745)
                           ...+.|.|..+..+|+|.|+|.|.|..+... ...+...     ..+|.+...+...   .|+.++ |.|.+.+.
T Consensus       353 ~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~  428 (512)
T 1zvo_C          353 SNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGF  428 (512)
T ss_pred             CCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeee
Confidence                 1124699999999999999999999876543 2222221     1345554443332   789999 99999986


Q ss_pred             CC--CeEEEeeCCEEccCceEE-----EeecC-------cEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        246 PK--PEVNWIHNQKELTGGRYT-----ILETG-------DLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       246 p~--~~i~W~~~~~~~~~~~~~-----~~~~~-------~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      ++  ..+.|+++|..+....+.     ...++       .|.|.....+|.|.|+|.|.|....
T Consensus       429 ~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~  492 (512)
T 1zvo_C          429 SPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSR  492 (512)
T ss_pred             CCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCC
Confidence            44  368999999888654322     22333       3666666667799999999987644

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.88  E-value=6e-22  Score=186.89  Aligned_cols=177  Identities=18%  Similarity=0.251  Sum_probs=139.9

Q ss_pred             EeeccceeEecCCcEEEEEEEeecC----CCeeEEEE----------------CCEecCC-----CCCeEecc-----CC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTP----LPQTIWSK----------------DGVPINP-----SDRISQGN-----YG   86 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p----~~~v~W~~----------------~~~~i~~-----~~~~~~~~-----~~   86 (745)
                      ..++..+.+.+|++++|.|.+.+.+    .+.+.|+|                ++..+..     ..|+.+..     ..
T Consensus         4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   83 (214)
T 3jz7_A            4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD   83 (214)
T ss_dssp             --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTB
T ss_pred             ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCc
Confidence            3455677899999999999998876    46999998                5555442     34565533     45


Q ss_pred             cEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEe
Q psy11701         87 KSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKP  165 (745)
Q Consensus        87 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~  165 (745)
                      .+|.|.+++.+|+|.|+|.+.+..|... ..+.|.|..+|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..
T Consensus        84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~  162 (214)
T 3jz7_A           84 ASINVTNLQLSDIGTYQCKVKKAPGVAN-KKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDS  162 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTT
T ss_pred             ccEEEccCChhhCeEEEEEEEeCCCccc-cEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCC
Confidence            6899999999999999999999887664 7789999999887666666668899999999999 8899999999995432


Q ss_pred             ccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        166 ISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       166 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      .... .........+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       163 ~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          163 QTMP-TPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             CCCC-GGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             CccC-ccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            2211 111223345699999999999999999999999999888888876

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.88  E-value=1.4e-21  Score=184.75  Aligned_cols=183  Identities=28%  Similarity=0.563  Sum_probs=149.2

Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCC-CceeecCceE----EEccCCCCCCEEEEE
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN-PRRKVGPNRI----TIENLRKSDTGNYGC  197 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~-~~~~~~~~~L----~i~~v~~~d~G~Y~C  197 (745)
                      ..+|.|...|....+.+|+++.|.|.+.+.|.+.+.|+++|..+...... .+....++.+    .|.+++.+|+|.|+|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            35788899999999999999999999999899999999999988754322 2233334444    688899999999999


Q ss_pred             EEEeCCceEE-EEEEEEEeecCCeeeeCCCceEEecCceEEEEEEE-eecCCCeEEEeeCCEEcc---------CceEEE
Q psy11701        198 NATNSLGYVY-KDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELT---------GGRYTI  266 (745)
Q Consensus       198 ~~~~~~g~~~-~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~---------~~~~~~  266 (745)
                      .+.|..|... ..+.+.|...+|.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+.         ..++..
T Consensus        87 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~  166 (217)
T 2vr9_A           87 VAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI  166 (217)
T ss_dssp             EEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEE
T ss_pred             EEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEe
Confidence            9999988764 34677776667777778888889999999999998 889999999999998875         334555


Q ss_pred             eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK  305 (745)
Q Consensus       267 ~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~  305 (745)
                      ...+.|.|.++..+|.|.|+|.|.|..|.......+.+.
T Consensus       167 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          167 VDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             ETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence            566789999999999999999999999987765444443

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.88  E-value=1.8e-21  Score=180.53  Aligned_cols=178  Identities=16%  Similarity=0.218  Sum_probs=129.5

Q ss_pred             Eeecccee-EecCCcEEEEEEEeecCCCeeEEEECC-EecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         37 YVTRKKEV-ALRNKKVELFCIFGGTPLPQTIWSKDG-VPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        37 ~~~~~~~~-v~~G~~~~l~C~~~g~p~~~v~W~~~~-~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      .+.|.+.. +.+|++++|.|.+.|.|.|.+.|+++. .++.  .+.........|.|.+++.+|+|.|+|.|.+..|.. 
T Consensus         4 ~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-   80 (202)
T 1vca_A            4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-   80 (202)
T ss_dssp             EEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE-
T ss_pred             EECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceE-
Confidence            34455544 459999999999999999999999842 2221  222323344579999999999999999999987764 


Q ss_pred             EEEEEEEEEecCeE-EecCceeEeeCCCeEEEEEEEeec-CC--CeEEEEeCCEeccCCCCCCc-----eeecCceEEEc
Q psy11701        115 SYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASGL-PE--PEIHWVHNGKPISQAPPNPR-----RKVGPNRITIE  185 (745)
Q Consensus       115 ~~~~~l~V~~~p~~-~~~~~~~~v~~G~~~~l~C~~~~~-p~--~~v~W~~~g~~~~~~~~~~~-----~~~~~~~L~i~  185 (745)
                      +..+.|.|..+|.. ...+. ..+.+|+.++|.|.+.+. |.  +.++|+|++..+........     .......|.|.
T Consensus        81 ~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~  159 (202)
T 1vca_A           81 EKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT  159 (202)
T ss_dssp             EEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEEC
T ss_pred             eeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEE
Confidence            47789999887753 33333 668999999999999875 43  37999999998753221110     01223457888


Q ss_pred             cCCCCCCEEEEEEEEeCCce-------EEEEEEEEEeecCC
Q psy11701        186 NLRKSDTGNYGCNATNSLGY-------VYKDVYVNVLAHAP  219 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g~-------~~~~~~l~v~~~~p  219 (745)
                      .+..+|+|.|+|+|.|..+.       ......|.|.. +|
T Consensus       160 ~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y-~P  199 (202)
T 1vca_A          160 PVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI-SP  199 (202)
T ss_dssp             CCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEEC-CC
T ss_pred             eeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEec-CC
Confidence            88889999999999998765       34567777764 44

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.88  E-value=5.5e-21  Score=191.15  Aligned_cols=291  Identities=13%  Similarity=0.086  Sum_probs=172.2

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEE
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL  481 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~  481 (745)
                      ..+|.++++.. ....++.|+|+++. ...++.+.+|++.+...   .   .....    ...+.+.+|.++..|.|+|+
T Consensus         4 ~~pP~nl~~~~-~~~~~v~l~W~pP~-~~~~~~~~~Y~v~~~~~---~---~~~~~----~~~~~~~~~~~~~~y~~~V~   71 (314)
T 3bpo_C            4 QPPVTNLSVSV-ENLCTVIWTWNPPE-GASSNCSLWYFSHFGDK---Q---DKKIA----PETRRSIEVPLNERICLQVG   71 (314)
T ss_dssp             CCCCEEEEEEE-ETTTEEEEEEECCS-SCCCSSCCCEEECCC-----C---CCEEE----SSSEEEEECCCSSCEEEEEE
T ss_pred             CCCCcceEEEe-CCceEEEEEEcCCC-CCCCCceEEEEEEeccc---C---ceEec----cccEEEEEEcCCCcEEEEEE
Confidence            47889999976 78899999999953 33356677899866331   1   11111    22345677899999999999


Q ss_pred             Eec-CCCCCCCCcceEEe--CCC-CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccc
Q psy11701        482 AFN-GAYNGPPSEIISFV--TPE-GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP  557 (745)
Q Consensus       482 a~n-~~G~g~~S~~~~~~--t~~-~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~  557 (745)
                      |.+ ..|.|.++..+...  +.+ .+|++|.++.+...+.+++.++|++|.+. +.+++|.|+|+..+...+....... 
T Consensus        72 a~~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~~~~-~~~~~Y~l~y~~~~~~~~~~C~~~~-  149 (314)
T 3bpo_C           72 SQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNT-SPDTNYTLYYWHRSLEKIHQCENIF-  149 (314)
T ss_dssp             ECC---------CCEEEEECCCCC-CCSSCEEEEEEEETTTEEEEEEECCC----CCCCEEEEEEESSCSSCEECCCEE-
T ss_pred             EEecCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEECCCCeEEEEECCCCCC-CCCccEEEEEEeCCCCccccCcCee-
Confidence            964 56677777766522  333 45668999999998899999999998765 4589999999875432221211100 


Q ss_pred             cccCCCcceeeecCCC----CCccEEEEEEEEecCCCCCCcceeeeccc----CCCCCCCCCCCCCcceeEEEeecCccc
Q psy11701        558 YISDPTTTSAKLAGLE----PSTKYRIHLAGYTKAGDGAESKYLFYVPF----KNPDNVEGRGSTPNNLVISWTAMPEIE  629 (745)
Q Consensus       558 ~~~~~~~~~~~l~~L~----p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~----~~~~~~~~~~~~p~~~~v~W~~~~~~~  629 (745)
                       . .+....+.+..+.    +++.|.|+|.|.|..|.+.++........    .+|.++.+. ...+++.|+|++|..  
T Consensus       150 -~-~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~~~~~~~~~~v~P~pP~~l~~~-~~~~~l~lsW~~P~~--  224 (314)
T 3bpo_C          150 -R-EGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQN--  224 (314)
T ss_dssp             -E-ETTEEEEEEECCC--------CCEEEEEEETTSCSCCEEEEECSSSSEECCCCEEEEEE-EETTEEEEEEECCTT--
T ss_pred             -c-CCCeEEEEECCCCccccceeEEEEEEEEEcCCCceecccEEEehhheEeeCCCCEEEEE-EcCCcEEEEEeCCCc--
Confidence             1 2334566666665    47899999999999999877643222111    111111121 234677888876653  


Q ss_pred             cCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEeccc
Q psy11701        630 HNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKF  709 (745)
Q Consensus       630 ~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  709 (745)
                      .++.+..|.|+|++.+.. .|..                     +.+        .........+.......+++.|.+|
T Consensus       225 ~~~~~l~Yev~y~~~~~~-~w~~---------------------~~~--------~~~~c~~~~~~~~~~~~~~~~l~~L  274 (314)
T 3bpo_C          225 FISRCLFYEVEVNNSQTE-THNV---------------------FYV--------QEAKCENPEFERNVENTSCFMVPGV  274 (314)
T ss_dssp             CCGGGEEEEEEEEC--CC-CEEE---------------------EEE--------SCCCCCCTTSSCCCSSEEEEEEESC
T ss_pred             cCCceEEEEEEEEECCCC-cceE---------------------Eec--------ccccccccccccccCCceEEEEccC
Confidence            333457788888754221 1100                     000        0000000000000135677889999


Q ss_pred             ccCCcceeEEEEecC------cc-cCCCCcceEEeCCCC
Q psy11701        710 VPASKNFARVLAFNG------AY-NGPPSEIISFVTPEG  741 (745)
Q Consensus       710 ~p~~~Y~~~v~A~~~------~G-~g~~s~~~~~~t~~~  741 (745)
                      +|++.|.|+|+|.+.      .| .|.||+++.|.+.++
T Consensus       275 ~p~t~Y~~qVra~~~~~~~~~~g~WS~WS~~~~~~~~~~  313 (314)
T 3bpo_C          275 LPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGKKRN  313 (314)
T ss_dssp             CTTSCEEEEEEEEECTTTSCCCCCCCCCCCCEEESCCCC
T ss_pred             CCCCEEEEEEEeeecccccCCCCeeCCCCCCeEecccCC
Confidence            999999999999984      56 489999999987653

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.88  E-value=1.7e-21  Score=178.35  Aligned_cols=173  Identities=23%  Similarity=0.443  Sum_probs=138.7

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec----CceEEEccCCCCCCEEEEEEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG----PNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      +|.|...|....+.+|+++.|.|.+.+.|.+.+.|+|++..+...... .....    .+.|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   80 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQL-YIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   80 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEE-EEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCce-EEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence            466778888899999999999999999899999999999988744211 11111    3689999999999999999999


Q ss_pred             eCCceE-EEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC-eEEEeeCCEEccCceEEEeecCcEEEcccC
Q psy11701        201 NSLGYV-YKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETGDLKITDVA  278 (745)
Q Consensus       201 ~~~g~~-~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~  278 (745)
                      +..+.. ...+.|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+ .+.|++++..+.....   ....|.|.++ 
T Consensus        81 ~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~---~~~~L~i~~~-  155 (182)
T 1rhf_A           81 DGGETEISQPVWLTVEG-VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---SPSVLNVTGV-  155 (182)
T ss_dssp             SCTTCEECCCEEEEEEC-SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---SSEEEEECCC-
T ss_pred             cCCCcEEEEEEEEEEec-CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---CceEEEEecc-
Confidence            987653 3457788874 7888888888899999999999999999998 9999999988865432   4557899888 


Q ss_pred             CCCCEEEEEEEEeCCceEE-EEEEEEE
Q psy11701        279 FADSGEYTCFARNKLGTAQ-GSGSLTV  304 (745)
Q Consensus       279 ~~d~G~Y~C~~~n~~g~~~-~~~~l~v  304 (745)
                       +|+|.|+|.|.|..|... ..+.|.|
T Consensus       156 -~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          156 -TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             -SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -ccCeEEEEEEECCCCCcccceEEEEe
Confidence             589999999999999874 3666665

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.88  E-value=2.7e-22  Score=185.79  Aligned_cols=169  Identities=14%  Similarity=0.120  Sum_probs=115.8

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC-eEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR-ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      |+.+...|. ..+.+|++++|.|.+.+.|. .+.|+|++..+....+ ......+..|.|.+++.+|+|.|+|.+.+..|
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (196)
T 2d3v_A            5 KATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG   82 (196)
T ss_dssp             BCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCC
Confidence            344455565 48999999999999988766 9999999987753211 11223456899999999999999999998876


Q ss_pred             eeE-EEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee---ecCceEEE
Q psy11701        112 EAK-SYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK---VGPNRITI  184 (745)
Q Consensus       112 ~~~-~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~---~~~~~L~i  184 (745)
                      ... +..+.|.|..   +|.+...+. ..+.+|++++|.|.+.+.| +.+.|+|+|..+..........   ...+.|.|
T Consensus        83 ~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I  160 (196)
T 2d3v_A           83 WSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPV  160 (196)
T ss_dssp             ECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEEC
T ss_pred             cCCcCccEEEEecCCCCCCeEEccCC-ccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEe
Confidence            432 4557788876   566655543 5788999999999999988 8999999998764211110111   12268999


Q ss_pred             ccCCCCCCEEEEEEEEeCCce
Q psy11701        185 ENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      .+++.+|+|.|+|.|.|..+.
T Consensus       161 ~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          161 GPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             CCCBTTBCEEEEEEEEETTEE
T ss_pred             eecCcccCeeEEEEEEccCCC
Confidence            999999999999999997653

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.88  E-value=1.2e-22  Score=190.85  Aligned_cols=175  Identities=24%  Similarity=0.388  Sum_probs=141.7

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEec------------CCCCCeEeccCCcEEEEccCCCCCCE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPI------------NPSDRISQGNYGKSLIIKHVEFSDQG  100 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i------------~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (745)
                      +..+...+....+.+|++++|.|.+.+.|.+.+.|+|++..+            ....++....  .+|.|.+++.+|+|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~L~i~~~~~~d~G   81 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP--TGITFKSVTREDTG   81 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET--TEEECSCCCTTSCS
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec--cEEEEeeCCHHHCc
Confidence            566778888999999999999999999899999999977552            1234455433  78999999999999


Q ss_pred             EEEEEEEeCCee-eEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCC------
Q psy11701        101 SYTCEVSNGVGE-AKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPN------  172 (745)
Q Consensus       101 ~Y~C~~~~~~g~-~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~------  172 (745)
                      .|+|.+.+..|. ..+..+.|.|..+|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......      
T Consensus        82 ~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  161 (209)
T 1nbq_A           82 TYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSN  161 (209)
T ss_dssp             EEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTT
T ss_pred             EEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeec
Confidence            999999987652 2346688899989988777777778999999999997 88999999999999988754322      


Q ss_pred             Cce--eecCceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        173 PRR--KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       173 ~~~--~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      ..+  ....+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus       162 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s  200 (209)
T 1nbq_A          162 SSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS  200 (209)
T ss_dssp             CCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEEC
T ss_pred             cceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccccc
Confidence            111  1245789999999999999999999999987443

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.88  E-value=1.6e-22  Score=186.70  Aligned_cols=164  Identities=22%  Similarity=0.256  Sum_probs=126.7

Q ss_pred             eeEeeCCCeEEEEEE---EeecCCCeEEEEeCCEeccCC--------------CCCCce----eecCceEEEccCCCCCC
Q psy11701        134 FINAAEEETVTFECK---ASGLPEPEIHWVHNGKPISQA--------------PPNPRR----KVGPNRITIENLRKSDT  192 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~---~~~~p~~~v~W~~~g~~~~~~--------------~~~~~~----~~~~~~L~i~~v~~~d~  192 (745)
                      ..++..|++++|.|.   +.+.|.+.++|+|+|..+...              ....+.    ......|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            356889999999996   467789999999987533210              000111    11235799999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEcc-----CceEEEe
Q psy11701        193 GNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTIL  267 (745)
Q Consensus       193 G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~-----~~~~~~~  267 (745)
                      |.|+|.|.|..|.....+.|.|.. ||.+...+....+.+|+.++|.|.+.|.|.|.|.|++++..+.     ..++.+.
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~-p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~  160 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE  160 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEE-EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEEC
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecC-CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEe
Confidence            999999999999999899999874 7777777777788899999999999999999999998765442     3455666


Q ss_pred             ecCcEEE---cccCCCCCEEEEEEEEeCCceEEE
Q psy11701        268 ETGDLKI---TDVAFADSGEYTCFARNKLGTAQG  298 (745)
Q Consensus       268 ~~~~l~i---~~~~~~d~G~Y~C~~~n~~g~~~~  298 (745)
                      .+++|.|   .++..+|+|.|+|.|.|..|....
T Consensus       161 ~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          161 KDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             TTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             CCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            6776555   588899999999999999998765

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.87  E-value=3.3e-22  Score=185.32  Aligned_cols=167  Identities=13%  Similarity=0.189  Sum_probs=127.0

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe-ccCCcEEEEccCCCCCCEEEEEEEEeCCe-
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ-GNYGKSLIIKHVEFSDQGSYTCEVSNGVG-  111 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g-  111 (745)
                      +.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..+....+... ...+..|.|.+++.+|+|.|+|.+.|..| 
T Consensus         6 P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (196)
T 3p2t_A            6 PTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGW   83 (196)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcc
Confidence            344566666 8999999999999987 6789999999988764221111 13456899999999999999999999887 


Q ss_pred             eeEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCc--eeecCceEEEcc
Q psy11701        112 EAKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR--RKVGPNRITIEN  186 (745)
Q Consensus       112 ~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~--~~~~~~~L~i~~  186 (745)
                      ...+..+.|.|..   +|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|+|+|..+........  .....+.|.|.+
T Consensus        84 ~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~  161 (196)
T 3p2t_A           84 SQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSP  161 (196)
T ss_dssp             BCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECS
T ss_pred             cCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceEEEeCC
Confidence            3344667788864   5666666654 6789999999999988 4468999999987653211111  122456899999


Q ss_pred             CCCCCCEEEEEEEEeCCc
Q psy11701        187 LRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g  204 (745)
                      ++.+|+|.|+|.|.|..+
T Consensus       162 v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          162 VTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             CCGGGCEEEEEEEECGGG
T ss_pred             CcccCCCeEEEEEEcCCC
Confidence            999999999999999875

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.87  E-value=2.5e-21  Score=177.54  Aligned_cols=179  Identities=21%  Similarity=0.279  Sum_probs=131.4

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      .+|++|.++++...+.++|.|+|++|.   +.|.+|.|+|+..++.    ....  .+ .....++.+.+|.|++.|.|+
T Consensus         5 t~p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~~~~~----~~~~--~~-~~~~~~~~i~~L~p~t~Y~~~   74 (186)
T 1qr4_A            5 TDLDNPKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYVSPSGK----KNEM--EI-PVDSTSFILRGLDAGTEYTIS   74 (186)
T ss_dssp             ---CCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECTTCC----EEEE--EE-CTTCSEEEEESCCSSCEEEEE
T ss_pred             CCCcCCCceEEEecCCCEEEEEEeCCC---CCccEEEEEEEeCCCC----eeEE--EC-CCCCCEEEECCCCCCCEEEEE
Confidence            468889999999999999999999984   4789999999954322    1111  12 456689999999999999999


Q ss_pred             EEEEecCCCCCCcceeeecccCCCCCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccc
Q psy11701        582 LAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQS  661 (745)
Q Consensus       582 V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~  661 (745)
                      |.|.|..|.|.+...........+.++.+.....+++.|+|+++.     |.+.+|.|.|+..+++.             
T Consensus        75 V~a~~~~~~s~~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~~~~-------------  136 (186)
T 1qr4_A           75 LVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPR-----SRVDSYRVSYVPITGGT-------------  136 (186)
T ss_dssp             EEEESSSCBCCCEEEEEECCCCCCSCEEEESCCSSCEEEEECCCS-----SCCSEEEEEEEETTCCC-------------
T ss_pred             EEEEcCCccCCCEEEEEECCCCCCCccEEEEeCCCEEEEEEECCC-----CcccEEEEEEEeCCCCC-------------
Confidence            999998877776444333333334444455567799999998664     46799999998653211             


Q ss_pred             eEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCC
Q psy11701        662 ELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP  739 (745)
Q Consensus       662 ~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~  739 (745)
                                                    .......+..+++.|.+|.|++.|.|+|+|.|+.|.|++.. ..++|.
T Consensus       137 ------------------------------~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~-~~~~T~  183 (186)
T 1qr4_A          137 ------------------------------PNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPIS-GILKTA  183 (186)
T ss_dssp             ------------------------------CEEEEEETTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEEC-
T ss_pred             ------------------------------ceEEEcCCCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCEE-EEEEec
Confidence                                          01112245778899999999999999999999999998865 566663

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.87  E-value=2.2e-21  Score=180.25  Aligned_cols=174  Identities=18%  Similarity=0.313  Sum_probs=130.9

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeec----CceEEEccCCCCCCEEEEEEEE
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVG----PNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      |.|.. +....+.+|+.+.|.|.+.+ .|.+.++|+|||+.+..+... +....    ...|.|.+++.+|+|.|+|.|.
T Consensus         4 p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~-~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            4 PFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKY-KMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             --CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSC-EEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             Ceeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCE-EEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            44433 33567899999999999964 799999999999999754322 22221    1269999999999999999999


Q ss_pred             eCCceEEEEEEEEEe--------------------ecCCeeeeCCCceEEecCceEEEEEEEeec-CCCeEEEeeCCEEc
Q psy11701        201 NSLGYVYKDVYVNVL--------------------AHAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKEL  259 (745)
Q Consensus       201 ~~~g~~~~~~~l~v~--------------------~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~  259 (745)
                      |  |.......+.+.                    ..+|.+...+ ...+.+|+.+.|.|.+.+. |.+.+.|++++..+
T Consensus        82 N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l  158 (207)
T 3rbs_A           82 D--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREI  158 (207)
T ss_dssp             E--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred             C--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEEC
Confidence            9  444444333221                    0256666555 4678899999999999998 89999999999988


Q ss_pred             cCc-eEEEe-ecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        260 TGG-RYTIL-ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV  304 (745)
Q Consensus       260 ~~~-~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v  304 (745)
                      ... ++... ....|.|.++..+|+|.|+|.|.|..|.....+.|.+
T Consensus       159 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          159 SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             CCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             CCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            543 22211 1236999999999999999999999999988887764

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.87  E-value=1.3e-21  Score=181.88  Aligned_cols=184  Identities=14%  Similarity=0.233  Sum_probs=135.0

Q ss_pred             CCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEE
Q psy11701        500 PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR  579 (745)
Q Consensus       500 ~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~  579 (745)
                      ..++| +|.++.+...+.++|.|+|++|.  ++.|.+|.|+|+..+........     .......++.+.+|.|++.|.
T Consensus        20 ~~~~P-~P~~l~~~~~~~~sv~lsW~~p~--~~~i~~Y~v~~~~~~~~~~~~~~-----~~~~~~~~~~i~~L~p~t~Y~   91 (203)
T 2gee_A           20 HMEVP-QPTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAGEGIPIFED-----FVDSSVGYYTVTGLEPGIDYD   91 (203)
T ss_dssp             SSCCC-CCEEEEEECCTTTCEEEEEECCS--SSSCCEEEEEEEESSSSSCCEEE-----EEETTCCEEEECSCCTTCEEE
T ss_pred             cccCc-CCCccEEEecCCCEEEEEecCCC--CCCccEEEEEEEECCCCCCceeE-----EcCCCccEEEeCCCCCCCEEE
Confidence            34667 78999999999999999999986  46899999999987654322111     114567899999999999999


Q ss_pred             EEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccc
Q psy11701        580 IHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR  659 (745)
Q Consensus       580 ~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~  659 (745)
                      |+|.|.|..|.|.++..........+.++.+....++++.|+|++++    +|.|.+|.|.|+...+...          
T Consensus        92 ~~V~a~~~~g~s~~~~~~t~~~~p~P~~l~~~~~~~~sv~l~W~~p~----~~~i~~Y~v~~~~~~~~~~----------  157 (203)
T 2gee_A           92 ISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEED----------  157 (203)
T ss_dssp             EEEEEESSSCBCCCEEEEEECCCCCCEEEEEEEEETTEEEEEEECCS----SCCCSEEEEEEEETTCGGG----------
T ss_pred             EEEEEEeCCCccccEeeeecCCCcCCCceEEEEcCCCEEEEEEcCCC----CCCccEEEEEEEECCCCCc----------
Confidence            99999999998887644322222222223333446688999999774    3578999999986422110          


Q ss_pred             cceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeC
Q psy11701        660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT  738 (745)
Q Consensus       660 ~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t  738 (745)
                                                      ......++..+++.|.+|.|++.|.|+|+|.|.+|.|+|+. ..++|
T Consensus       158 --------------------------------~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~-~~~~T  203 (203)
T 2gee_A          158 --------------------------------VAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQKT  203 (203)
T ss_dssp             --------------------------------CEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC
T ss_pred             --------------------------------cEEEEcCCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCee-eEEcC
Confidence                                            01112256788999999999999999999999999998875 44444

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.87  E-value=5.4e-22  Score=186.22  Aligned_cols=164  Identities=13%  Similarity=0.160  Sum_probs=123.0

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeE-eccCCc--EEEEccCCCCCCEEEEEEEEeCC
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS-QGNYGK--SLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~-~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      +.+...|. ..+.+|++|+|.|.+.+ +.+.+.|+|+|..+....+.. ....+.  .|.|.+++.+|+|.|+|.+.+..
T Consensus        10 P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   87 (218)
T 1uct_A           10 PFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGH   87 (218)
T ss_dssp             CCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCC
Confidence            33445555 58999999999999986 677999999987654222211 112234  89999999999999999999976


Q ss_pred             ee-eEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEcc
Q psy11701        111 GE-AKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN  186 (745)
Q Consensus       111 g~-~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~  186 (745)
                      |. ..+..+.|.|..   +|.+...| ...+.+|++++|.|...+.+.+.+.|+|+|..+...   .......+.|.|.+
T Consensus        88 ~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~---~~~~~~~~~L~I~~  163 (218)
T 1uct_A           88 YRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ---HQSGEHPANFSLGP  163 (218)
T ss_dssp             TEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS---EEECSSSEEEECCS
T ss_pred             CceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc---ccCCCccCEEEEcc
Confidence            43 334557788865   56676666 457899999999997777778899999999877531   11223467899999


Q ss_pred             CCCCCCEEEEEEEEeCC
Q psy11701        187 LRKSDTGNYGCNATNSL  203 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~  203 (745)
                      ++.+|+|.|+|.|.|..
T Consensus       164 v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          164 VDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             CCGGGCEEEEEEEECTT
T ss_pred             CCcccCEEEEEEEEcCC
Confidence            99999999999999863

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.87  E-value=7.2e-22  Score=183.32  Aligned_cols=168  Identities=15%  Similarity=0.184  Sum_probs=121.5

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC-eEeccCCcEEEEccCCCCCCEEEEEEEEeCC-
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR-ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV-  110 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-  110 (745)
                      |+.+...|. ..+.+|++++|.|.+.+.|. .+.|+|+|..+....+ ......+..|.|.+++.+|+|.|+|.+.+.. 
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~   82 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTA   82 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTT
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCC
Confidence            444455565 48999999999999988776 7999999987742111 1112445689999999999999999999976 


Q ss_pred             ee-eEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee---cCceEE
Q psy11701        111 GE-AKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV---GPNRIT  183 (745)
Q Consensus       111 g~-~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~---~~~~L~  183 (745)
                      |. ..+..+.|.|..   +|.+...+. ..+.+|++++|.|.+.+. .+.+.|+|+|..+...........   ..+.|.
T Consensus        83 g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~  160 (198)
T 1ugn_A           83 GRSESSDPLELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFS  160 (198)
T ss_dssp             EECCCCCCEEEEEECSSCCCEEEEESC-SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEE
T ss_pred             CcccCCccEEEEEcccccCCccccCCc-cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEE
Confidence            52 334567888876   456655543 578899999999999887 779999999987742211111111   236899


Q ss_pred             EccCCCCCCEEEEEEEEeCCc
Q psy11701        184 IENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       184 i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      |.+++.+|+|.|+|.|.|..+
T Consensus       161 i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          161 VGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             ECCCCTTSCEEEEEEEECTTS
T ss_pred             ecccCcccCeEEEEEEEeCCC
Confidence            999999999999999999865

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.87  E-value=3.2e-21  Score=174.23  Aligned_cols=163  Identities=20%  Similarity=0.285  Sum_probs=128.8

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecC-CCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTP-LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p-~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      +..+...|....+.+|++++|.|.+.+.| .+.+.|+|+|..+...        ...+.|.+++.+|+|.|+|.+.+...
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~--------~~~~~~~~~~~~d~G~Y~C~~~~~~~   75 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH--------TQPSYRFKANNNDSGEYTCQTGQTSL   75 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC--------CSSEEEEECCGGGCEEEEEEETTSBC
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC--------ccceEEEecccccCeEEEEEEeCCCc
Confidence            34466777878899999999999998886 5699999999998733        34577889999999999999986433


Q ss_pred             eeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCC
Q psy11701        112 EAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS  190 (745)
Q Consensus       112 ~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~  190 (745)
                      .   ..+.|.|..+|.+...+ ...+.+|+.+.|.|.+. +.|.+.+.|+++|..+..       ......|.|.++..+
T Consensus        76 s---~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~-------~~~~~~L~i~~v~~~  144 (170)
T 3ry4_A           76 S---DPVHLTVLFEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF-------SHLDPTFSIPQANHS  144 (170)
T ss_dssp             C---CCEEEEEECCSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE-------ESSCCEEEESSCCGG
T ss_pred             e---EeEEEEEECCceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCeEccc-------cCCCCeEEEEecccc
Confidence            3   44788888877555444 45688999999999994 556689999999988752       223568999999999


Q ss_pred             CCEEEEEEEEeCCceE-EEEEEEEE
Q psy11701        191 DTGNYGCNATNSLGYV-YKDVYVNV  214 (745)
Q Consensus       191 d~G~Y~C~~~~~~g~~-~~~~~l~v  214 (745)
                      |+|.|+|.|.|..|.. +..+.|.|
T Consensus       145 d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          145 HSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCEEEEEEEEeCcCccccccEEEEE
Confidence            9999999999998863 23345444

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.87  E-value=9.1e-22  Score=185.34  Aligned_cols=197  Identities=19%  Similarity=0.191  Sum_probs=146.9

Q ss_pred             EeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEeccc-ccCcce
Q psy11701        398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKF-VPASKN  476 (745)
Q Consensus       398 v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~~~~~Y  476 (745)
                      +..||.+|.++.+.. .+.+++.|+|+++...   +...+|.|+|+.......  ..... ......++|.+| .+++.|
T Consensus         4 ~g~pP~~P~~l~~~~-~~~~sv~l~W~~p~~~---~~~~~Y~v~~~~~~~~~~--~~~~~-~~~~~~~~i~~L~~~~t~Y   76 (215)
T 1bqu_A            4 SGLPPEKPKNLSCIV-NEGKKMRCEWDGGRET---HLETNFTLKSEWATHKFA--DCKAK-RDTPTSCTVDYSTVYFVNI   76 (215)
T ss_dssp             -CCCCCCCEEEEEEE-ETTSCCEEEEECCSCC---SSCCEEEEEEEETTEECC--CEECC-SSCTTEEECSSCCCTTSCE
T ss_pred             cCCCCCCCEeeEeEE-CCCCcEEEEcCCCCCC---CCCceEEEEEEEcCCCcc--ccccc-cCCcceEEEcCCccccccE
Confidence            346899999999877 7778999999986443   234799998876543211  11112 445678999999 999999


Q ss_pred             eEEEEEecCCCCCCCCcceEEeCC-CCCCCCCCceeEEEc--CCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcc
Q psy11701        477 FARVLAFNGAYNGPPSEIISFVTP-EGVPGTVQSLEAIPL--GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLL  553 (745)
Q Consensus       477 ~~~V~a~n~~G~g~~S~~~~~~t~-~~~P~~p~~~~~~~~--~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~  553 (745)
                      .|+|.|.|..|.+. +....+.+. ..+|.+|.++.+...  +.+++.|+|++|...+|.|.+|.|+|+..+...|....
T Consensus        77 ~~~V~A~n~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y~~~~~~~~~~~~  155 (215)
T 1bqu_A           77 EVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIP  155 (215)
T ss_dssp             EEEEEEEETTEEEE-CCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTCSSCEECC
T ss_pred             EEEEEEEecccCcc-CCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCCcceEEEEEEEccCCCCCceEec
Confidence            99999999999886 444555433 347888989988765  67899999999987778999999999987644333221


Q ss_pred             cccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCC
Q psy11701        554 ERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNP  605 (745)
Q Consensus       554 ~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~  605 (745)
                      ..   .......++.|.+|.|++.|.|+|+|.|..|.|++|+++..+...+.
T Consensus       156 ~~---~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~  204 (215)
T 1bqu_A          156 PE---DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY  204 (215)
T ss_dssp             GG---GGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEEC
T ss_pred             cc---cccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCccccccc
Confidence            10   01345689999999999999999999999999988776654444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.87  E-value=4.4e-22  Score=202.51  Aligned_cols=179  Identities=20%  Similarity=0.252  Sum_probs=144.7

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCE-EEEEEEEeCCe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG-SYTCEVSNGVG  111 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~g  111 (745)
                      |+.+...+.+..+.+|++++|.|.+.|.|.+.+.|++++..+............++|.|.+++.+|+| .|+|.|.+..|
T Consensus       158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g  237 (347)
T 2ifg_A          158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG  237 (347)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             CCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCC
Confidence            55567788999999999999999999999999999999876543222222334568999999999999 99999999988


Q ss_pred             eeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce--------eecCceEE
Q psy11701        112 EAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR--------KVGPNRIT  183 (745)
Q Consensus       112 ~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~--------~~~~~~L~  183 (745)
                      ... ..+.|.|..+|.+    ....+.+|+.+.|.|.+.|.|.+.++|+|+|..+.........        ....+.|.
T Consensus       238 ~~~-~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~  312 (347)
T 2ifg_A          238 RAE-VSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR  312 (347)
T ss_dssp             ECC-EEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEE
T ss_pred             CEE-EEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEE
Confidence            775 6788888888875    1223467999999999999999999999999998743321111        01245799


Q ss_pred             EccCCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       184 i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      |.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus       313 I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          313 LNQPTHVNNGNYTLLAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred             ECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence            999999999999999999999998888888764

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.87  E-value=4.8e-21  Score=183.07  Aligned_cols=188  Identities=29%  Similarity=0.512  Sum_probs=148.1

Q ss_pred             EecCeEEecC----ceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCC--ceeecCceEEEccCCCCCCEEEE
Q psy11701        123 LAAPYFTVEP----EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP--RRKVGPNRITIENLRKSDTGNYG  196 (745)
Q Consensus       123 ~~~p~~~~~~----~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~  196 (745)
                      ..+|.|...+    ....+.+|+++.|.|.+.+.|.+.+.|+++|..+.......  ........|.|.+++.+|+|.|+
T Consensus        13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   92 (231)
T 3ojm_B           13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT   92 (231)
T ss_dssp             CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred             ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence            3467775555    77889999999999999999999999999999887543332  22334568999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEEeec---CCeee-eCCCceEEecCceEEEEEEEeecCCCeEEEee----CCEEccCce---EE
Q psy11701        197 CNATNSLGYVYKDVYVNVLAH---APEIT-EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH----NQKELTGGR---YT  265 (745)
Q Consensus       197 C~~~~~~g~~~~~~~l~v~~~---~p~~~-~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~----~~~~~~~~~---~~  265 (745)
                      |.+.|..|.....+.|.|...   +|.+. ..+....+.+|+.++|.|.+.+.|.+.+.|++    ++..+....   ..
T Consensus        93 C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~  172 (231)
T 3ojm_B           93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLK  172 (231)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEE
T ss_pred             EEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEe
Confidence            999999998888888888752   23332 23567788999999999999999999999999    666553221   11


Q ss_pred             E--------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeeccee
Q psy11701        266 I--------LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI  310 (745)
Q Consensus       266 ~--------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~  310 (745)
                      .        ...+.|.|.++...|+|.|+|.|.|..|.....+.|.|..+|..
T Consensus       173 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  225 (231)
T 3ojm_B          173 VLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA  225 (231)
T ss_dssp             EEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred             EecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence            1        11245999999999999999999999999999999999887644

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.87  E-value=8.2e-21  Score=179.14  Aligned_cols=171  Identities=22%  Similarity=0.399  Sum_probs=143.6

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ..+.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+...        ..+.|.|.+++.+|+|.|+|.+.+..
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~   88 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG--------NTSELIFNAVHVKDAGFYVCRVNNNF   88 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC--------CSSEEEETTCCGGGCEEEEEEEECTT
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC--------CCCEEEEccCChhhCeEeEEEEEcCC
Confidence            3567888899999999999999999999999999999999988643        24689999999999999999999987


Q ss_pred             ceE-EEEEEEEEeecC--------------CeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEee
Q psy11701        204 GYV-YKDVYVNVLAHA--------------PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILE  268 (745)
Q Consensus       204 g~~-~~~~~l~v~~~~--------------p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~  268 (745)
                      +.. ...+.|.|...+              |.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+...     .
T Consensus        89 ~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~-----~  163 (218)
T 3k0w_A           89 TFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----T  163 (218)
T ss_dssp             CCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC-----C
T ss_pred             CCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC-----C
Confidence            754 334677776532              67777888889999999999999999999999999999888654     2


Q ss_pred             cCcEEEcccCCCCCEEEEEEEEeCCce-EEEEEEEEEeec
Q psy11701        269 TGDLKITDVAFADSGEYTCFARNKLGT-AQGSGSLTVKEH  307 (745)
Q Consensus       269 ~~~l~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~~  307 (745)
                      ...|.|.++...|+|.|+|.|.|..|. .+..+.|.|...
T Consensus       164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred             CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence            457999999999999999999998887 456677777653

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=179.15  Aligned_cols=157  Identities=17%  Similarity=0.171  Sum_probs=122.9

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      |+.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|+|..        ....+..|.|.+++.+|+|.|+|.+.+..|.
T Consensus         8 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~--------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   77 (184)
T 2gi7_A            8 KPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS--------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLW   77 (184)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC--------CEESSSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc--------ccCcccEEEECcCChhhCceEEEEEEcCCCc
Confidence            3444455554 8999999999999987 7789999999865        1234568999999999999999999998764


Q ss_pred             -eEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC
Q psy11701        113 -AKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR  188 (745)
Q Consensus       113 -~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~  188 (745)
                       ..+..+.|.|..   +|.+...| ...+.+|++++|.|.+.+.+ +.+.|+|+|..+...   .........|.|.+++
T Consensus        78 ~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~---~~~~~~~~~L~i~~v~  152 (184)
T 2gi7_A           78 SLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYK---NPERWYRASFPIITVT  152 (184)
T ss_dssp             BCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSC---CCCEEEEESSSEEEET
T ss_pred             cCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcce---ecCCCceEEEEEccCC
Confidence             334557777743   56676666 45688999999999987644 699999999887642   1223345689999999


Q ss_pred             CCCCEEEEEEEEeCCc
Q psy11701        189 KSDTGNYGCNATNSLG  204 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g  204 (745)
                      .+|+|.|+|.|.|..+
T Consensus       153 ~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          153 AAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             TCCSEEEEEEEECTTS
T ss_pred             ccCCeEEEEEEEeCCC
Confidence            9999999999999754

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.86  E-value=4.2e-21  Score=178.32  Aligned_cols=186  Identities=16%  Similarity=0.206  Sum_probs=137.8

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCC-ceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      ++|++|.++++...+.++|.|+|++|...+| ++.+|.|+|+..+...+.....      .....++.+.+|.|++.|.|
T Consensus         4 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~------~~~~~~~~~~~L~p~t~Y~~   77 (197)
T 3lpw_A            4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVAT------NCHKTSWKVDQLQEGCSYYF   77 (197)
T ss_dssp             CSCCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEE------EECSSEEEECCCCTTCEEEE
T ss_pred             CCCCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeec------CCCccEEEEcCCCCCCEEEE
Confidence            6799999999999999999999999975444 6999999999876544332221      34568999999999999999


Q ss_pred             EEEEEecCCCCCCcceeeecccCCCC----CCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCcc
Q psy11701        581 HLAGYTKAGDGAESKYLFYVPFKNPD----NVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVL  656 (745)
Q Consensus       581 ~V~a~n~~G~g~~S~~~~~~~~~~~~----~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~  656 (745)
                      +|.|.|..|.|.+|......+...++    .+.+.....+++.|+|.++... .++.+.+|.|.|+..+... +      
T Consensus        78 ~V~a~~~~g~~~~s~~~~~~t~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~v~~~~~~~~~-~------  149 (197)
T 3lpw_A           78 RVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHD-GGSRILGYIVEMQTKGSDK-W------  149 (197)
T ss_dssp             EEEEEETTEECCCEECSSCEESCCCCCCCSCEEEEEECSSCEEEEECCCSCC-TTSCCCEEEEEEEETTCSC-C------
T ss_pred             EEEEEcCccccCCCCCccceecCCCCCCCcccEEEeccCCeEEEEecCCCcC-CCCcccEEEEEEEeCCCCc-e------
Confidence            99999999999987654433333222    2222334568899999875432 3347899999998642211 0      


Q ss_pred             ccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEE
Q psy11701        657 DWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF  736 (745)
Q Consensus       657 ~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~  736 (745)
                                                           ........+++.+.+|.|++.|.|+|+|.|..|.|++|++...
T Consensus       150 -------------------------------------~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~~  192 (197)
T 3lpw_A          150 -------------------------------------ATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVP  192 (197)
T ss_dssp             -------------------------------------EEEEEESSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSSC
T ss_pred             -------------------------------------EEeecccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCccc
Confidence                                                 0011236788999999999999999999999999999876544


Q ss_pred             eC
Q psy11701        737 VT  738 (745)
Q Consensus       737 ~t  738 (745)
                      .+
T Consensus       193 v~  194 (197)
T 3lpw_A          193 VI  194 (197)
T ss_dssp             EE
T ss_pred             Ee
Confidence            33

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.86  E-value=8.4e-21  Score=182.62  Aligned_cols=188  Identities=27%  Similarity=0.540  Sum_probs=143.8

Q ss_pred             ecCeEEec----CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCC--ceeecCceEEEccCCCCCCEEEEE
Q psy11701        124 AAPYFTVE----PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP--RRKVGPNRITIENLRKSDTGNYGC  197 (745)
Q Consensus       124 ~~p~~~~~----~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C  197 (745)
                      .+|.|...    +....+.+|+++.|.|.+.+.|.+.+.|+++|..+.......  ........|.|.+++.+|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            35655433    456789999999999999999999999999999887543322  233356789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEeec---CCee-eeCCCceEEecCceEEEEEEEeecCCCeEEEee----CCEEccCc-e-EE-E
Q psy11701        198 NATNSLGYVYKDVYVNVLAH---APEI-TEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH----NQKELTGG-R-YT-I  266 (745)
Q Consensus       198 ~~~~~~g~~~~~~~l~v~~~---~p~~-~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~----~~~~~~~~-~-~~-~  266 (745)
                      .+.+..+.....+.+.|...   +|.+ ...+....+.+|+.++|.|.+.+.|.+.+.|++    ++..+... . +. .
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~  169 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV  169 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEE
T ss_pred             EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeee
Confidence            99999998888888888753   2333 334667778899999999999999999999999    77665322 1 11 0


Q ss_pred             ---------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceee
Q psy11701        267 ---------LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT  311 (745)
Q Consensus       267 ---------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~  311 (745)
                               ...+.|.|.++..+|.|.|+|.|.|..|.....+.|.|..+|...
T Consensus       170 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          170 LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE  223 (241)
T ss_dssp             EEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-------
T ss_pred             eeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCC
Confidence                     123469999999999999999999999999999999998876543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=8.2e-21  Score=174.06  Aligned_cols=164  Identities=21%  Similarity=0.325  Sum_probs=129.8

Q ss_pred             eeEecCCcEEEEEEEeecCCC--eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         43 EVALRNKKVELFCIFGGTPLP--QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p~~--~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      ..+.+|++++|.|.+.+.|.+  .+.|+|++..|.......   ....|.|.  +.+|+|.|+|.+.+..    ...+.|
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~---~~~~l~i~--~~~d~G~Y~C~~~n~~----~~~~~l   78 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG---QKTEFKVD--SDDQWGEYSCVFLPEP----MGTANI   78 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC---SEEEEEEC--GGGCCEEEEEEEESTT----SCEEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC---CcEEEEEe--chhhCeEEEEEEECCc----CcEEEE
Confidence            567899999999999888777  999999999887543221   23356665  6899999999999732    145788


Q ss_pred             EEEecCeEEecCceeEeeCCCeEEEEEEEeecC-CCeEEEEe---CCEeccCCCCCCceee----cCceEEEccCC-CCC
Q psy11701        121 SVLAAPYFTVEPEFINAAEEETVTFECKASGLP-EPEIHWVH---NGKPISQAPPNPRRKV----GPNRITIENLR-KSD  191 (745)
Q Consensus       121 ~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~---~g~~~~~~~~~~~~~~----~~~~L~i~~v~-~~d  191 (745)
                      .|..+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++   ++..+.......++..    ....|.|.++. .+|
T Consensus        79 ~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d  158 (184)
T 3b5h_A           79 QLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEAD  158 (184)
T ss_dssp             EECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTS
T ss_pred             EEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccccc
Confidence            899999999988888899999999999999988 78999999   4443332211122222    12489999999 899


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        192 TGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       192 ~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      +|.|+|.|.|..|.....+.|.|.
T Consensus       159 ~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          159 PGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             SEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CceEEEEEEeCCCcceEEEEEEEe
Confidence            999999999999998888888875

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.86  E-value=1.1e-20  Score=173.33  Aligned_cols=174  Identities=16%  Similarity=0.299  Sum_probs=135.0

Q ss_pred             EeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCccee
Q psy11701        398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNF  477 (745)
Q Consensus       398 v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~  477 (745)
                      +..+|.+|.++++.. .+.+++.|+|+++.     +.+.+|.|+|+...   .......+ ......+.|.+|.+++.|.
T Consensus         3 ~~t~p~~P~~l~~~~-~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~---~~~~~~~~-~~~~~~~~i~~L~p~t~Y~   72 (186)
T 1qr4_A            3 AGTDLDNPKDLEVSD-PTETTLSLRWRRPV-----AKFDRYRLTYVSPS---GKKNEMEI-PVDSTSFILRGLDAGTEYT   72 (186)
T ss_dssp             -----CCCEEEEEES-CCSSEEEEEEECCS-----SCCSEEEEEEECTT---CCEEEEEE-CTTCSEEEEESCCSSCEEE
T ss_pred             ccCCCcCCCceEEEe-cCCCEEEEEEeCCC-----CCccEEEEEEEeCC---CCeeEEEC-CCCCCEEEECCCCCCCEEE
Confidence            446789999999987 88999999999852     46889999887432   23444555 5677899999999999999


Q ss_pred             EEEEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccc
Q psy11701        478 ARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP  557 (745)
Q Consensus       478 ~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~  557 (745)
                      |+|.|.|..|.+.+. .+.+.|.   |.+|.++++...+.++|.|+|++|.   +.|.+|.|+|+..+........    
T Consensus        73 ~~V~a~~~~~~s~~~-~~~~~t~---p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~~~~~~~~~~~----  141 (186)
T 1qr4_A           73 ISLVAEKGRHKSKPT-TIKGSTV---VGSPKGISFSDITENSATVSWTPPR---SRVDSYRVSYVPITGGTPNVVT----  141 (186)
T ss_dssp             EEEEEESSSCBCCCE-EEEEECC---CCCCSCEEEESCCSSCEEEEECCCS---SCCSEEEEEEEETTCCCCEEEE----
T ss_pred             EEEEEEcCCccCCCE-EEEEECC---CCCCCccEEEEeCCCEEEEEEECCC---CcccEEEEEEEeCCCCCceEEE----
Confidence            999999987766543 3455553   7778899999999999999999875   5799999999987653221111    


Q ss_pred             cccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCc
Q psy11701        558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES  594 (745)
Q Consensus       558 ~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S  594 (745)
                       + .....++.|.+|.|++.|.|+|.|.|..|.|.+.
T Consensus       142 -~-~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  176 (186)
T 1qr4_A          142 -V-DGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPI  176 (186)
T ss_dssp             -E-ETTCCEEEECSCCSSCEEEEEEEEEETTEECCCE
T ss_pred             -c-CCCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCE
Confidence             2 4566899999999999999999999999988874

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.86  E-value=1e-20  Score=176.30  Aligned_cols=177  Identities=22%  Similarity=0.357  Sum_probs=142.1

Q ss_pred             EecCceeEeeCCCeEEEEEE-EeecCC-CeEEEEeCCEeccCCCCCCce-eecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        129 TVEPEFINAAEEETVTFECK-ASGLPE-PEIHWVHNGKPISQAPPNPRR-KVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~-~~~~p~-~~v~W~~~g~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      ...+....+.+|+++.|.|. +.+.|. +.+.|++++..+......... ...++.|.|.+++.+|+|.|+|.+.+..+.
T Consensus        12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   91 (201)
T 3s97_C           12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSIT   91 (201)
T ss_dssp             SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGT
T ss_pred             cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCC
Confidence            34457788999999999999 888888 899999999877533222222 234678999999999999999999997765


Q ss_pred             EEEE---EEEEEee------cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcc
Q psy11701        206 VYKD---VYVNVLA------HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITD  276 (745)
Q Consensus       206 ~~~~---~~l~v~~------~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~  276 (745)
                      ....   ..+.+..      .+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+..........+.|.|.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~  171 (201)
T 3s97_C           92 KSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFN  171 (201)
T ss_dssp             EEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECS
T ss_pred             cchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEcc
Confidence            5432   3333321      345566666678899999999999999999999999999988776555555667899999


Q ss_pred             cCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        277 VAFADSGEYTCFARNKLGTAQGSGSLTVK  305 (745)
Q Consensus       277 ~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~  305 (745)
                      +..+|+|.|+|.|.|..|.....+.|.|+
T Consensus       172 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          172 IQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            99999999999999999999888888875

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.86  E-value=2.4e-22  Score=209.79  Aligned_cols=216  Identities=18%  Similarity=0.212  Sum_probs=156.4

Q ss_pred             CCCCEEEEEEEEeCCceEEEE-EEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCc
Q psy11701        373 ELDSGQYTCRAQTELDFIEAQ-ATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS  451 (745)
Q Consensus       373 ~~~~g~y~c~a~n~~g~~~~~-~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~  451 (745)
                      ..+.|.|.|.+.|..+..... .......||.+|.++.. . .+.+++.|+|+++. ...+.++.+|.|+|+........
T Consensus       304 s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~nl~~-~-vs~tSv~LsW~pP~-~~gG~~i~~Y~V~~~~~~~~~~~  380 (536)
T 3fl7_A          304 PSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTA-V-GMGAKVELRWTPPQ-DSGGREDIVYSVTCEQCWPESGE  380 (536)
T ss_dssp             CCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSCEEE-E-CCTTSEEEEECCBS-CCCSCSCCEEEEEEEEECC-CCC
T ss_pred             CCCCCccEEEEeccccccCCCccccccccCCCcccceEE-E-ecCCEEEEEEeCCc-CCCCCceeEEEEEEEeccCCCCc
Confidence            346789999999988865432 22334568999999854 5 78899999999853 22233699999998864321111


Q ss_pred             e------eEEE--EccCceeEEEecccccCcceeEEEEEecCCCC---CCCCcceEEeCCCCCCCCCCceeEEEcCCceE
Q psy11701        452 I------RELI--VNKGESTTTEVDKFVPASKNFARVLAFNGAYN---GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAF  520 (745)
Q Consensus       452 ~------~~~~--~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~---g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i  520 (745)
                      +      ....  ........++|.+|.|++.|.|+|.|.|..|.   ++.+..+.++|.+.+|.   .+.....+.++|
T Consensus       381 ~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~Ps---~~~~~~~s~tSV  457 (536)
T 3fl7_A          381 CGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPP---KVRLEGRSTTSL  457 (536)
T ss_dssp             EEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCCC---EEEEEECCC-CC
T ss_pred             ccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeecccCCC---CCceeeccCCeE
Confidence            1      0010  01235778999999999999999999999997   45667778888766654   444577889999


Q ss_pred             EEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        521 YLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       521 ~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      .|+|++|.+.+|+|.+|.|+|+..+..  ....     ......++++|.+|+|++.|.|+|.|.|.+|.|++|..+.+.
T Consensus       458 ~LsW~pP~~~ng~I~~Y~V~y~~~~~~--~~~~-----~v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~  530 (536)
T 3fl7_A          458 SVSWSIPPPQQSRVWKYEVTYRKKGDS--NSYN-----VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQ  530 (536)
T ss_dssp             EEEEECCTTTTTTCSEEEEEEEEC--C--CCCE-----EEEESSSEEECCSCCSSCEEEEEEEEECC---CEECCCEEEE
T ss_pred             EEEEECCcCCCCcccEEEEEEEECCCC--ceEE-----EEcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEE
Confidence            999999988889999999999987654  1111     114567899999999999999999999999999999877554


Q ss_pred             c
Q psy11701        601 P  601 (745)
Q Consensus       601 ~  601 (745)
                      +
T Consensus       531 T  531 (536)
T 3fl7_A          531 T  531 (536)
T ss_dssp             C
T ss_pred             e
Confidence            3

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.86  E-value=7.5e-21  Score=176.68  Aligned_cols=177  Identities=18%  Similarity=0.355  Sum_probs=139.6

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      ..| +|.++.+.. .+.+++.|+|+++.    ++.+.+|.|+|+..+... ......+ ......++|.+|.|++.|.|+
T Consensus        22 ~~P-~P~~l~~~~-~~~~sv~lsW~~p~----~~~i~~Y~v~~~~~~~~~-~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~   93 (203)
T 2gee_A           22 EVP-QPTDLSFVD-ITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGI-PIFEDFV-DSSVGYYTVTGLEPGIDYDIS   93 (203)
T ss_dssp             CCC-CCEEEEEEC-CTTTCEEEEEECCS----SSSCCEEEEEEEESSSSS-CCEEEEE-ETTCCEEEECSCCTTCEEEEE
T ss_pred             cCc-CCCccEEEe-cCCCEEEEEecCCC----CCCccEEEEEEEECCCCC-CceeEEc-CCCccEEEeCCCCCCCEEEEE
Confidence            344 788998887 88999999999854    356899999988765432 2233344 567889999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccc
Q psy11701        480 VLAFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI  559 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~  559 (745)
                      |.|.|..|.+.++   .+.+...+| +|.++++...+.+++.|+|++|.  ++.|.+|.|+|+............    +
T Consensus        94 V~a~~~~g~s~~~---~~~t~~~~p-~P~~l~~~~~~~~sv~l~W~~p~--~~~i~~Y~v~~~~~~~~~~~~~~~----~  163 (203)
T 2gee_A           94 VYTVKNGGESTPT---TLTQQTAVP-PPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNEEDVAELS----I  163 (203)
T ss_dssp             EEEESSSCBCCCE---EEEEECCCC-CCEEEEEEEEETTEEEEEEECCS--SCCCSEEEEEEEETTCGGGCEEEE----E
T ss_pred             EEEEeCCCccccE---eeeecCCCc-CCCceEEEEcCCCEEEEEEcCCC--CCCccEEEEEEEECCCCCccEEEE----c
Confidence            9999988877554   455555666 78999999999999999999985  468999999999865432211111    2


Q ss_pred             cCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcc
Q psy11701        560 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK  595 (745)
Q Consensus       560 ~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~  595 (745)
                       ....+++.|.+|.|++.|.|+|.|.|..|.|+++.
T Consensus       164 -~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~  198 (203)
T 2gee_A          164 -SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR  198 (203)
T ss_dssp             -CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             -CCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCee
Confidence             55678999999999999999999999999999854

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.86  E-value=1.1e-20  Score=177.23  Aligned_cols=174  Identities=17%  Similarity=0.319  Sum_probs=133.5

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC-------------------CCCeEeccCCcEEEEccCCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP-------------------SDRISQGNYGKSLIIKHVEFS   97 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~-------------------~~~~~~~~~~~~L~i~~~~~~   97 (745)
                      .+.+....+.+|++++|.|.+.+.+.+.+.|+|++.....                   ..++.+.. +++|.|.+++.+
T Consensus         3 ~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~i~~v~~~   81 (208)
T 3r4d_A            3 TIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-NGSLLFQMITMK   81 (208)
T ss_dssp             EEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT-TSCEEECSCCGG
T ss_pred             cccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEec-CCeEEEcccccc
Confidence            4556667899999999999988888889999997542211                   23444432 347999999999


Q ss_pred             CCEEEEEEEEeCCeeeEEEEEEEEEEec---CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCc
Q psy11701         98 DQGSYTCEVSNGVGEAKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR  174 (745)
Q Consensus        98 d~G~Y~C~~~~~~g~~~~~~~~l~V~~~---p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~  174 (745)
                      |+|.|+|.+.+..+...+..+.|.|..+   |.+...+..  +.+|+.+.|.|.+.+.| +.+.|+++|..+..... ..
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~-~~  157 (208)
T 3r4d_A           82 DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTER-MT  157 (208)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSS-EE
T ss_pred             CCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCC-eE
Confidence            9999999999986555557788888765   555554444  88999999999999866 79999999998874321 12


Q ss_pred             eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEE-EEEEEe
Q psy11701        175 RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVL  215 (745)
Q Consensus       175 ~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~  215 (745)
                      ....++.|.|.++..+|+|.|+|.|.|..|..... +.|.|.
T Consensus       158 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          158 LSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             EETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             EcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            22244789999999999999999999999886644 566555

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.86  E-value=7.2e-21  Score=176.71  Aligned_cols=168  Identities=21%  Similarity=0.371  Sum_probs=133.0

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCe-EEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      ..|.+...|....+.+|+++.|.|.+.+.|.+. +.|+|+|..+...         .+.|.|.+++.+|+|.|+|.+.|.
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~   76 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ---------ASSYFIDAATVDDSGEYRCQTQLS   76 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC---------SSEEEESSCCGGGCEEEEEEETTS
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC---------ccEEEEecccccCCEEEEEEeCCC
Confidence            456777888888899999999999999987764 9999999988632         279999999999999999999874


Q ss_pred             CceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeec-CCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCC
Q psy11701        203 LGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKELTGGRYTILETGDLKITDVAFAD  281 (745)
Q Consensus       203 ~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  281 (745)
                        .....+.|.|.. +|.+...+. ..+.+|++++|.|.+.+. |.+.+.|++++..+..    ....+.|.|.++..+|
T Consensus        77 --~~s~~~~l~V~~-~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~----~~~~~~L~i~~v~~~D  148 (204)
T 3sgj_C           77 --TLSDPVQLEVHI-GWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY----FHHNSDFYIPKATLKD  148 (204)
T ss_dssp             --BCCCCEEEEEEC-SSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----EEECCCEEESSCCGGG
T ss_pred             --cccccEEEEEec-CceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec----ccCCceEEECcCCccc
Confidence              334456777764 455555444 678899999999999766 5578999999987632    2245689999999999


Q ss_pred             CEEEEEEEEeCC-ceEEEEEEEEEeecc
Q psy11701        282 SGEYTCFARNKL-GTAQGSGSLTVKEHT  308 (745)
Q Consensus       282 ~G~Y~C~~~n~~-g~~~~~~~l~v~~~p  308 (745)
                      +|.|+|.|.|.. +..+..+.|.|..++
T Consensus       149 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          149 SGSYFCRGLVGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence            999999999954 445667788887654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=1.9e-21  Score=178.47  Aligned_cols=163  Identities=15%  Similarity=0.189  Sum_probs=121.7

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCC-CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      +.+...|.. .+.+|++|+|.|.+.+. .+.+.|+|+|..+.... .......+..|.|.+++.+|+|.|+|.+.+..+.
T Consensus         5 P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~   82 (188)
T 1oll_A            5 PFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELW   82 (188)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCC
Confidence            344555665 89999999999999753 46899999998764211 1112234568999999999999999999886543


Q ss_pred             e-EEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC
Q psy11701        113 A-KSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR  188 (745)
Q Consensus       113 ~-~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~  188 (745)
                      . .+..+.|.|..   +|.+...| ...+.+|++++|.|.+.+ +.+.+.|+|+|..+..   ..........|.|.+++
T Consensus        83 ~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~---~~~~~~~~~~L~I~~v~  157 (188)
T 1oll_A           83 SEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV---QRGYGKVQAEFPLGPVT  157 (188)
T ss_dssp             CCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE---EEEECSSEEEEEEEECC
T ss_pred             CCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc---cccCCCceeEEEECCCC
Confidence            2 24557777764   67776666 356899999999999876 4569999999976652   11112235689999999


Q ss_pred             CCCCEEEEEEEEeCC
Q psy11701        189 KSDTGNYGCNATNSL  203 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~  203 (745)
                      .+|+|.|+|.|.|..
T Consensus       158 ~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          158 TAHRGTYRCFGSYNN  172 (188)
T ss_dssp             GGGCEEEEEECEEET
T ss_pred             cCCCcEEEEEEEcCC
Confidence            999999999999864

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.86  E-value=5.4e-21  Score=177.72  Aligned_cols=179  Identities=14%  Similarity=0.215  Sum_probs=128.0

Q ss_pred             CCCceeEEEcC--CceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        506 TVQSLEAIPLG--SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       506 ~p~~~~~~~~~--~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      +|.++++..++  .++|.|+|++|  .++.|.+|.|+|+.......  +....  + .....++.|.+|.|++.|.|+|.
T Consensus         2 ~P~~l~v~~v~~~~~si~l~W~~p--~~~~i~~Y~v~~~~~~~~~~--~~~~~--~-~~~~~~~~i~~L~p~t~Y~~~V~   74 (201)
T 2ha1_A            2 GPVEVFITETPSQPNSHPIQWNAP--QPSHISKYILRWRPKNSVGR--WKEAT--I-PGHLNSYTIKGLKPGVVYEGQLI   74 (201)
T ss_dssp             CCCEEECCSCSCCSSCEEEEEECC--SSTTCCEEEEEEEETTCSSC--CEEEE--E-CTTCCEEEECSCCTTEEEEEEEE
T ss_pred             CceeEEEEecCCCCCEEEEEEeCC--CCCCceEEEEEEEECCCCCc--eEEEe--c-CCCccEEEecCCCCCCEEEEEEE
Confidence            57888888877  99999999998  46799999999997654211  11111  2 45568999999999999999999


Q ss_pred             EEecCCCCCCcceeeeccc--------------CC-C----CCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEecc
Q psy11701        584 GYTKAGDGAESKYLFYVPF--------------KN-P----DNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRH  644 (745)
Q Consensus       584 a~n~~G~g~~S~~~~~~~~--------------~~-~----~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~  644 (745)
                      |.|..|.|.++........              .. +    .++.+....++++.|+|.++     +|.|.+|.|.|+..
T Consensus        75 a~n~~G~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p-----~~~i~~Y~v~~~~~  149 (201)
T 2ha1_A           75 SIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA-----SDTVSGFRVEYELS  149 (201)
T ss_dssp             EECTTSCEEEEEEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCS-----CTTEEEEEEEEEET
T ss_pred             EEecccccCceeEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCC-----CCCccEEEEEEEEC
Confidence            9999999876422111100              00 1    11233344678899999876     34789999999854


Q ss_pred             CCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecC
Q psy11701        645 NTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG  724 (745)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~  724 (745)
                      ..+..                                          ......+++.+++.|.+|+|++.|.|+|+|.|.
T Consensus       150 ~~~~~------------------------------------------~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~  187 (201)
T 2ha1_A          150 EEGDE------------------------------------------PQYLDLPSTATSVNIPDLLPGRKYIVNVYQISE  187 (201)
T ss_dssp             TTCCC------------------------------------------CEEEEEETTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCc------------------------------------------eeEEEcCCceeEEEeCCCCCCCEEEEEEEEEcC
Confidence            22211                                          011122567889999999999999999999999


Q ss_pred             cccCCCCcceEEeC
Q psy11701        725 AYNGPPSEIISFVT  738 (745)
Q Consensus       725 ~G~g~~s~~~~~~t  738 (745)
                      +|.|++......+|
T Consensus       188 ~G~~~~~s~~~~tT  201 (201)
T 2ha1_A          188 DGEQSLILSTSQTT  201 (201)
T ss_dssp             TSCEEEEEEEEEEC
T ss_pred             CCCcccEeeEeecC
Confidence            99998877665554

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.86  E-value=9.8e-21  Score=178.19  Aligned_cols=180  Identities=28%  Similarity=0.476  Sum_probs=140.7

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEecc---------CCCCCCceeecCceEEEccCCCCCCEEEE
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS---------QAPPNPRRKVGPNRITIENLRKSDTGNYG  196 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~---------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  196 (745)
                      ..+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.         ......+.......|.|.+++.+|+|.|+
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~   81 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEE
Confidence            456667888899999999999999998999999999876531         01123345555689999999999999999


Q ss_pred             EEEEeCCc--eEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEE-EeecCCCeEEEeeCCE-EccCc----------
Q psy11701        197 CNATNSLG--YVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCR-VFGAPKPEVNWIHNQK-ELTGG----------  262 (745)
Q Consensus       197 C~~~~~~g--~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~-~~~~p~~~i~W~~~~~-~~~~~----------  262 (745)
                      |.+.+..|  .....+.|.|.. +|.+...+....+.+|+.++|.|. +.+.|.+.+.|++++. .+...          
T Consensus        82 C~~~~~~g~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~  160 (212)
T 1f97_A           82 CMVSEEGGQNYGEVSIHLTVLV-PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS  160 (212)
T ss_dssp             EEEEETTSSSEEEEEEEEEEEB-CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSS
T ss_pred             EEEEccCCCcccEEEEEEEEEc-CCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCc
Confidence            99999876  556667888875 555555555667889999999999 7889999999999998 76532          


Q ss_pred             eEEE-eecCcEEEcccCCCCCEEEEEEEEeCCceE--EEEEEEEEee
Q psy11701        263 RYTI-LETGDLKITDVAFADSGEYTCFARNKLGTA--QGSGSLTVKE  306 (745)
Q Consensus       263 ~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~--~~~~~l~v~~  306 (745)
                      ++.. ...+.|.|.++..+|.|.|+|.|.|..|..  +..+.|.|..
T Consensus       161 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          161 SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             CEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             eeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            2222 235689999999999999999999999987  4455565543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.85  E-value=8.8e-21  Score=183.67  Aligned_cols=177  Identities=20%  Similarity=0.295  Sum_probs=131.6

Q ss_pred             EeeccceeEecCCcEEEEEEEee---cCCCeeEEEECCEecC------------------------------CCCCeEec
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGG---TPLPQTIWSKDGVPIN------------------------------PSDRISQG   83 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g---~p~~~v~W~~~~~~i~------------------------------~~~~~~~~   83 (745)
                      ..++..+.+.+|++++|.|.+.+   .|.+.+.|+|++..+.                              ...|+.+.
T Consensus         6 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   85 (250)
T 2fbo_J            6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA   85 (250)
T ss_dssp             ECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECS
T ss_pred             EcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEec
Confidence            34455788999999999999988   7888999999875430                              12344433


Q ss_pred             c-CCcEEEEccCCCCCCEEEEEEEEeCCeee----EEEEEEEEEEec---CeEEe-cCceeEeeCCCeEEEEEEEeecCC
Q psy11701         84 N-YGKSLIIKHVEFSDQGSYTCEVSNGVGEA----KSYSIDLSVLAA---PYFTV-EPEFINAAEEETVTFECKASGLPE  154 (745)
Q Consensus        84 ~-~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~----~~~~~~l~V~~~---p~~~~-~~~~~~v~~G~~~~l~C~~~~~p~  154 (745)
                      . ...+|.|.+++.+|+|.|+|.+.+..+..    .+..+.|.|..+   |.+.. .+....+.+|+++.|.|.+.+.|.
T Consensus        86 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~  165 (250)
T 2fbo_J           86 NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN  165 (250)
T ss_dssp             CTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTT
T ss_pred             cCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCC
Confidence            3 23479999999999999999999876532    245688888764   34443 355677889999999999999899


Q ss_pred             CeEEEEeCCEeccCCCCC---------------------Cceee-cCceEEEccCCCCCCEEEEEEEEeCC---ceEEEE
Q psy11701        155 PEIHWVHNGKPISQAPPN---------------------PRRKV-GPNRITIENLRKSDTGNYGCNATNSL---GYVYKD  209 (745)
Q Consensus       155 ~~v~W~~~g~~~~~~~~~---------------------~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~---g~~~~~  209 (745)
                      +.++|+|++..+......                     .+... ..+.|.|.+++.+|+|.|+|.|.|..   |.....
T Consensus       166 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~  245 (250)
T 2fbo_J          166 ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS  245 (250)
T ss_dssp             CEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEE
T ss_pred             CeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCcccee
Confidence            999999999877542211                     11111 45799999999999999999999944   455555


Q ss_pred             EEEE
Q psy11701        210 VYVN  213 (745)
Q Consensus       210 ~~l~  213 (745)
                      +.|.
T Consensus       246 ~~l~  249 (250)
T 2fbo_J          246 TILK  249 (250)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.85  E-value=5.3e-21  Score=175.21  Aligned_cols=159  Identities=20%  Similarity=0.305  Sum_probs=126.2

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEe--cC------------CCCCeEecc-----CCcEEEEccCCCCCCEE
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVP--IN------------PSDRISQGN-----YGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~--i~------------~~~~~~~~~-----~~~~L~i~~~~~~d~G~  101 (745)
                      +.+.+.+|++++|.|.+.+.|.+.+.|+|++..  +.            ...++....     ...+|.|.+++.+|+|.
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            345789999999999999889999999998863  21            022333322     24469999999999999


Q ss_pred             EEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCce
Q psy11701        102 YTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR  181 (745)
Q Consensus       102 Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~  181 (745)
                      |+|.+.+..+     .+.|.|..   +.. +....+.+|++++|.|.+.+.|.+.+.|++++..+         ....+.
T Consensus        83 Y~C~~~~~~~-----~~~l~V~~---~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~---------~~~~~~  144 (184)
T 2ny1_B           83 YICEVEDQKE-----EVQLLVFG---LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN---------IQGGKT  144 (184)
T ss_dssp             EEEEETTEEE-----EEEEEEEE---EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE---------EEESSE
T ss_pred             EEEEEEcCCC-----cEEEEEEE---ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc---------ccCceE
Confidence            9999976543     35566653   222 45567899999999999988899999999987654         345679


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeec
Q psy11701        182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH  217 (745)
Q Consensus       182 L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~  217 (745)
                      |.|.+++.+|+|.|+|.|.|..+.....+.|.|...
T Consensus       145 L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~  180 (184)
T 2ny1_B          145 LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF  180 (184)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEec
Confidence            999999999999999999999998888888888753

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.85  E-value=1.3e-20  Score=184.61  Aligned_cols=197  Identities=18%  Similarity=0.261  Sum_probs=129.2

Q ss_pred             eEeeccceeEecCCcEEEEEEEe---ecCCCeeEEEECCEecCCC------------------CCeEec----cCCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFG---GTPLPQTIWSKDGVPINPS------------------DRISQG----NYGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~---g~p~~~v~W~~~~~~i~~~------------------~~~~~~----~~~~~L~   90 (745)
                      +...+....+.+|++++|.|.+.   +.+.+.+.|+|++......                  .++.+.    ..+.+|.
T Consensus         8 v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   87 (268)
T 3mj6_A            8 LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLL   87 (268)
T ss_dssp             ----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEE
T ss_pred             cccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEE
Confidence            45667778999999999999997   6777789999965433211                  344432    2236899


Q ss_pred             EccCCCCCCEEEEEEEEeCCeee-EEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEE---eecCCCeEEEEeC-CEe
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGEA-KSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA---SGLPEPEIHWVHN-GKP  165 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~~-~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~---~~~p~~~v~W~~~-g~~  165 (745)
                      |.+++.+|+|.|+|.+.+..+.. ....+.|.|..     ..|....+.+|++++|.|.+   .+.|.+.+.|+++ +..
T Consensus        88 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~  162 (268)
T 3mj6_A           88 LQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP-----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSH  162 (268)
T ss_dssp             ECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC-----CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTC
T ss_pred             ECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec-----cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCC
Confidence            99999999999999999875443 34556666642     34567789999999999999   5668889999994 321


Q ss_pred             cc------------------CCCCCCcee------ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCee
Q psy11701        166 IS------------------QAPPNPRRK------VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI  221 (745)
Q Consensus       166 ~~------------------~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~  221 (745)
                      ..                  ......+..      ...+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~  242 (268)
T 3mj6_A          163 TEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR  242 (268)
T ss_dssp             SSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC----
T ss_pred             CcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCee
Confidence            11                  011111111      235689999999999999999999999998899999997778888


Q ss_pred             eeCCCceEEecCceEE
Q psy11701        222 TEAPKDEYTVDGKTVV  237 (745)
Q Consensus       222 ~~~~~~~~v~~g~~~~  237 (745)
                      ...|....+.+|+.+.
T Consensus       243 ~~~p~~~~~~~~q~~~  258 (268)
T 3mj6_A          243 TISPTPPTDKGQQGIL  258 (268)
T ss_dssp             ----------------
T ss_pred             eeCCCCCCCCcceecc
Confidence            8888887777776543

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.85  E-value=8e-20  Score=182.81  Aligned_cols=273  Identities=12%  Similarity=0.090  Sum_probs=175.4

Q ss_pred             CCceEEecCceEEEEEEEeec-----CCCeEEEeeCCEEccCceEEEeec----CcEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        225 PKDEYTVDGKTVVLTCRVFGA-----PKPEVNWIHNQKELTGGRYTILET----GDLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       225 ~~~~~v~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      |....+..|++++|.|.+.+.     +.+.+.|.+++..+..+++.....    +.|.|.++...|+|.|.|.+.+..+.
T Consensus         7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B            7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             ESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred             CCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence            456678899999999999886     467899999998886554432222    45999999999999999988665555


Q ss_pred             EEEEEEEEEeecceeecCCCcEEEe-c--CCeEEEEEEEEecC--CCCcEEEEeeCCeeccCCCCCeEEE---cCCeEEE
Q psy11701        296 AQGSGSLTVKEHTHITDQPEDYEVE-A--GQSATFRCNAVSDP--SLKLSIVWLRGSEPIDFESEPRFVQ---SNDYSLT  367 (745)
Q Consensus       296 ~~~~~~l~v~~~p~~~~~p~~~~~~-~--g~~~~l~C~~~~~~--~~~~~i~W~~~~~~~~~~~~~~~~~---~~~~~l~  367 (745)
                      ....+.|.|..+|   ..|.++.+. .  ...+.+.|......  ...+.+.+...+.............   .......
T Consensus        87 ~~~~~~l~v~~~P---~~P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (313)
T 2d9q_B           87 ILDQVELRAGYPP---AIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCS  163 (313)
T ss_dssp             EEEEEEEEECCCC---CCCEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCTTSCSCCCCEEEECCCTTCSEEE
T ss_pred             eEEEEEEccCCCC---CCCccceeeECCCCccEEEEecCCCCCCCceeEEEEEEecCCCcccCCcccccCCCCCCCcEEE
Confidence            5556777776654   445555442 2  23455555433221  1124444443321111000001111   1122344


Q ss_pred             Ee--cCCCCCCEEEEEEEEeCCceEEEE-EEEEE--eccCCCCCCceeEEee------cCceeEEEEEeCCCCCcceeee
Q psy11701        368 VT--KSSELDSGQYTCRAQTELDFIEAQ-ATLTV--QVPLEAPSNFTLIQVI------DAKKAVVSWNPVSPQSLRGHFR  436 (745)
Q Consensus       368 i~--~~~~~~~g~y~c~a~n~~g~~~~~-~~l~v--~~pp~~P~~~~~~~~~------~~~~v~l~W~~~~~~~~~~~i~  436 (745)
                      +.  .+.....+.++|.|.|..|..... ..+..  ..+|.+|.++.+.. .      ..+++.|+|+++..  .++.+.
T Consensus       164 ~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~-~~~~~~~~~~~l~l~W~~p~~--~~~~~l  240 (313)
T 2d9q_B          164 IPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDP-SPEAAPPQAGCLQLSWEPWQP--GLHINQ  240 (313)
T ss_dssp             EEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEECCC--------CCSCEEEEEECCGG--GTTSCE
T ss_pred             ECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeEEEE-ecccccCCCCeEEEEECCCCC--CCceeE
Confidence            43  478888999999999999976432 22221  14688998887754 3      46899999998642  223357


Q ss_pred             eEEEEEE-eccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCC---CCcceEEeCCCCCCC
Q psy11701        437 GYKVQTW-TEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGP---PSEIISFVTPEGVPG  505 (745)
Q Consensus       437 ~y~i~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~---~S~~~~~~t~~~~P~  505 (745)
                      +|.|+|+ ..+..  .|..+.........+.|.+|.+++.|.|+|+|.|..|.|.   +|..+.++|.+++|+
T Consensus       241 ~Y~v~y~~~~~~~--~w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~  311 (313)
T 2d9q_B          241 KCELRHKPQRGEA--SWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA  311 (313)
T ss_dssp             EEEEEEEESSSCC--CCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC----
T ss_pred             EEEEEEccCCCCC--CcEEcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCCC
Confidence            9999998 44332  3443332244567899999999999999999999988775   667788999888774

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.85  E-value=2e-20  Score=176.19  Aligned_cols=192  Identities=16%  Similarity=0.150  Sum_probs=136.9

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCC-CCCccEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL-EPSTKYRI  580 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~p~t~Y~~  580 (745)
                      .+|++|.++++...+.+++.|+|++|.+.++ +.+|.|+|+..+... ....     .......++.|.+| .+++.|.|
T Consensus         6 ~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~~-~~~Y~v~~~~~~~~~-~~~~-----~~~~~~~~~~i~~L~~~~t~Y~~   78 (215)
T 1bqu_A            6 LPPEKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKF-ADCK-----AKRDTPTSCTVDYSTVYFVNIEV   78 (215)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCSCCSS-CCEEEEEEEETTEEC-CCEE-----CCSSCTTEEECSSCCCTTSCEEE
T ss_pred             CCCCCCEeeEeEECCCCcEEEEcCCCCCCCC-CceEEEEEEEcCCCc-cccc-----cccCCcceEEEcCCccccccEEE
Confidence            5788999999999888999999999987655 489999998764321 1111     11445688999999 99999999


Q ss_pred             EEEEEecCCCCCCcceeeecccC----CCCCCCCCC--CCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccC
Q psy11701        581 HLAGYTKAGDGAESKYLFYVPFK----NPDNVEGRG--STPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDD  654 (745)
Q Consensus       581 ~V~a~n~~G~g~~S~~~~~~~~~----~~~~~~~~~--~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~  654 (745)
                      +|.|.|..|.+.++.........    .+..+.+..  ..++++.|+|+++..  .+|.|.+|.|+|+..+. ..+....
T Consensus        79 ~V~A~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~--~~~~i~~Y~v~y~~~~~-~~~~~~~  155 (215)
T 1bqu_A           79 WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQYRTKDA-STWSQIP  155 (215)
T ss_dssp             EEEEEETTEEEECCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGG--GGTSCEEEEEEEEETTC-SSCEECC
T ss_pred             EEEEEecccCccCCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCC--CCcceEEEEEEEccCCC-CCceEec
Confidence            99999999998743322211111    111222222  266899999997764  46788999999987532 1111110


Q ss_pred             ccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCC---CC
Q psy11701        655 VLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGP---PS  731 (745)
Q Consensus       655 ~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~---~s  731 (745)
                      ..                                       ...+..+.+.|.+|.|++.|.|+|+|.|.+|.|+   +|
T Consensus       156 ~~---------------------------------------~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S  196 (215)
T 1bqu_A          156 PE---------------------------------------DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWS  196 (215)
T ss_dssp             GG---------------------------------------GGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCC
T ss_pred             cc---------------------------------------cccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCC
Confidence            00                                       0034667899999999999999999999999866   67


Q ss_pred             cceEEeCCCCC
Q psy11701        732 EIISFVTPEGG  742 (745)
Q Consensus       732 ~~~~~~t~~~~  742 (745)
                      +++.++|++++
T Consensus       197 ~~~~~~T~~~~  207 (215)
T 1bqu_A          197 EEASGITYEDR  207 (215)
T ss_dssp             CCEEEEECCCH
T ss_pred             CcccccccccC
Confidence            78999998765

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.85  E-value=4.1e-21  Score=173.62  Aligned_cols=157  Identities=17%  Similarity=0.196  Sum_probs=120.1

Q ss_pred             ceeEecCCcEEEEEEEee--cCCCeeEEEECCEecC----------CCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         42 KEVALRNKKVELFCIFGG--TPLPQTIWSKDGVPIN----------PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g--~p~~~v~W~~~~~~i~----------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .+.+.+|++++|.|...+  .+.+.|.|+|++..|.          ...|+.+...+ +|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g-sL~I~~v~~~D~G~Y~C~~~n~   83 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG-DLKIKNLTRDDSGTYNVTVYST   83 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS-CEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC-cEEEcccccccCEEEEEEEEeC
Confidence            467899999999995433  4566899999997552          34566664444 5999999999999999999998


Q ss_pred             Ceee-EEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC
Q psy11701        110 VGEA-KSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR  188 (745)
Q Consensus       110 ~g~~-~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~  188 (745)
                      .|.. .+..+.|.|..++.   .|  .....+..+.|.|.+.+.|.+.++|+|+|..+....          .+.|.++.
T Consensus        84 ~g~~~~~~~~~l~V~~~~~---~p--~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~----------~~~i~~~~  148 (176)
T 1hng_A           84 NGTRILNKALDLRILEMVS---KP--MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR----------QKTMSYQW  148 (176)
T ss_dssp             TCCEEEEEEEEEEEECCCC---CC--EEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEES----------SSEEEEEC
T ss_pred             CCCEEEEEEEEEEEeCCCC---CC--EEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCC----------cEEEEEEE
Confidence            8876 45667888876431   11  112235569999999999999999999999876321          25566888


Q ss_pred             CCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        189 KSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      .+|+|.|+|.|.|..|.....+.|.+
T Consensus       149 ~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          149 TNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             SCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             ccCCeEEEEEEEecCCCceecccccC
Confidence            99999999999999998877765543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.85  E-value=2.7e-20  Score=175.10  Aligned_cols=168  Identities=26%  Similarity=0.386  Sum_probs=133.1

Q ss_pred             eCCCeEEEEEEEeec-CCCeEEEEeCCEeccCCCCCCceeec--CceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        138 AEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKVG--PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       138 ~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      ..++.+.|.|.+.+. |.+.++|+|+|..+...... .....  ...|.|.+++.+|+|.|+|.+.|..|.....+.|.+
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v   93 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRV-KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG   93 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSE-EEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeE-EEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEE
Confidence            468888999998874 57899999999998754221 11122  245999999999999999999998888777776655


Q ss_pred             ee--------------------cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC-ceEEEeec-C--
Q psy11701        215 LA--------------------HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG-GRYTILET-G--  270 (745)
Q Consensus       215 ~~--------------------~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~-~--  270 (745)
                      ..                    .++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++..... +  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~  173 (212)
T 2r15_A           94 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT  173 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTE
T ss_pred             eeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCE
Confidence            42                    234444556667899999999999999999999999999988764 34444332 2  


Q ss_pred             -cEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        271 -DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE  306 (745)
Q Consensus       271 -~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~  306 (745)
                       .|.|.+++..|.|.|+|.|.|..|.....+.|.|..
T Consensus       174 ~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          174 AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence             799999999999999999999999988888888864

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.85  E-value=1.9e-20  Score=174.04  Aligned_cols=176  Identities=15%  Similarity=0.303  Sum_probs=134.3

Q ss_pred             CCCCceeEEeec--CceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEE
Q psy11701        404 APSNFTLIQVID--AKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL  481 (745)
Q Consensus       404 ~P~~~~~~~~~~--~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~  481 (745)
                      +|.++.+.. .+  .+++.|+|+++    .++.+.+|.|+|+.... ...+..+.+ ......++|.+|.|++.|.|+|.
T Consensus         2 ~P~~l~v~~-v~~~~~si~l~W~~p----~~~~i~~Y~v~~~~~~~-~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~   74 (201)
T 2ha1_A            2 GPVEVFITE-TPSQPNSHPIQWNAP----QPSHISKYILRWRPKNS-VGRWKEATI-PGHLNSYTIKGLKPGVVYEGQLI   74 (201)
T ss_dssp             CCCEEECCS-CSCCSSCEEEEEECC----SSTTCCEEEEEEEETTC-SSCCEEEEE-CTTCCEEEECSCCTTEEEEEEEE
T ss_pred             CceeEEEEe-cCCCCCEEEEEEeCC----CCCCceEEEEEEEECCC-CCceEEEec-CCCccEEEecCCCCCCEEEEEEE
Confidence            577888766 66  89999999985    35679999999886543 233455566 66678999999999999999999


Q ss_pred             EecCCCCCCCCcceEEeCCCC-----------CCCC-C----CceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcC
Q psy11701        482 AFNGAYNGPPSEIISFVTPEG-----------VPGT-V----QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVK  545 (745)
Q Consensus       482 a~n~~G~g~~S~~~~~~t~~~-----------~P~~-p----~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~  545 (745)
                      |.|..|.|.++ .+.++|...           .|.+ |    .++++...+.++|.|+|++|   ++.|.+|.|+|+...
T Consensus        75 a~n~~G~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p---~~~i~~Y~v~~~~~~  150 (201)
T 2ha1_A           75 SIQQYGHQEVT-RFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA---SDTVSGFRVEYELSE  150 (201)
T ss_dssp             EECTTSCEEEE-EEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCS---CTTEEEEEEEEEETT
T ss_pred             EEecccccCce-eEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCC---CCCccEEEEEEEECC
Confidence            99999998754 344443321           1222 2    46788888999999999988   358999999999754


Q ss_pred             CcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcc
Q psy11701        546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK  595 (745)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~  595 (745)
                      ...+.....    + .+...++.|.+|.|++.|.|+|.|+|..|.|.+..
T Consensus       151 ~~~~~~~~~----v-~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~s  195 (201)
T 2ha1_A          151 EGDEPQYLD----L-PSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLIL  195 (201)
T ss_dssp             TCCCCEEEE----E-ETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEEE
T ss_pred             CCCceeEEE----c-CCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccEe
Confidence            333322111    2 45678999999999999999999999999998743

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.84  E-value=4e-20  Score=171.40  Aligned_cols=177  Identities=16%  Similarity=0.233  Sum_probs=128.3

Q ss_pred             EecCceeE-eeCCCeEEEEEEEeecCCCeEEEEeCC-EeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701        129 TVEPEFIN-AAEEETVTFECKASGLPEPEIHWVHNG-KPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV  206 (745)
Q Consensus       129 ~~~~~~~~-v~~G~~~~l~C~~~~~p~~~v~W~~~g-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~  206 (745)
                      .+.|.... +.+|+++.|.|.+.|.|.+.+.|+++. ..+..   ..........|.|.+++.+|+|.|+|.|.|..|..
T Consensus         4 ~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~   80 (202)
T 1vca_A            4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL   80 (202)
T ss_dssp             EEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS---EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE
T ss_pred             EECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccc---eEEEcCCccEEEECcCCHHHCEEEEEEEEECCceE
Confidence            34444443 459999999999999999999999843 22110   00011123579999999999999999999998888


Q ss_pred             EEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCC---CeEEEeeCCEEccCceEE--------EeecCcEEEc
Q psy11701        207 YKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPK---PEVNWIHNQKELTGGRYT--------ILETGDLKIT  275 (745)
Q Consensus       207 ~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~--------~~~~~~l~i~  275 (745)
                      ...+.|.|...|..+...+. ..+.+|+.++|.|.+.+.++   +.+.|++++..+....+.        ......|.|.
T Consensus        81 ~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~  159 (202)
T 1vca_A           81 EKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT  159 (202)
T ss_dssp             EEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEEC
T ss_pred             eeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEE
Confidence            88889999865544444443 56889999999999988643   379999999876432211        1112346788


Q ss_pred             ccCCCCCEEEEEEEEeCCce-------EEEEEEEEEeecce
Q psy11701        276 DVAFADSGEYTCFARNKLGT-------AQGSGSLTVKEHTH  309 (745)
Q Consensus       276 ~~~~~d~G~Y~C~~~n~~g~-------~~~~~~l~v~~~p~  309 (745)
                      ....+|.|.|+|.|.|..+.       .+....|.|..+|.
T Consensus       160 ~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          160 PVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             CCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             eeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            88888999999999998765       35677788877663

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.84  E-value=4.2e-20  Score=167.43  Aligned_cols=166  Identities=21%  Similarity=0.360  Sum_probs=131.5

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCe-EEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPE-IHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .+|.+...|....+.+|++++|.|.+.+.|.+. +.|+|+|..+..         ..+.|.|.+++.+|+|.|+|.+.|.
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y~C~~~n~   76 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS---------QASSYFIDAATVNDSGEYRCQTNLS   76 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES---------SCSEEEESSCCGGGCEEEEEECSSS
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC---------CceEEEEeCCCcccCEEEEEEeeCC
Confidence            367788888888899999999999999887765 899999988762         3568999999999999999999985


Q ss_pred             CceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC-eEEEeeCCEEccCceEEEeecCcEEEcccCCCC
Q psy11701        203 LGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETGDLKITDVAFAD  281 (745)
Q Consensus       203 ~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  281 (745)
                      .+  ...+.|.|.. ++.+... ....+.+|+.++|.|.+.+.+++ .+.|++++..+..    ....+.|.|.+++.+|
T Consensus        77 ~~--s~~~~l~V~~-~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~----~~~~~~L~i~~v~~~d  148 (175)
T 1fnl_A           77 TL--SDPVQLEVHI-GWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----FHHNSDFHIPKATLKD  148 (175)
T ss_dssp             CC--CCCEEEEEEC-SSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----EEECCCEEESSCCGGG
T ss_pred             cc--cccEEEEEeC-CCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC----CCCCCEEEEcccChhh
Confidence            54  3345666663 3333333 44678899999999999887664 9999999987732    2245789999999999


Q ss_pred             CEEEEEEEEeCCce-EEEEEEEEEee
Q psy11701        282 SGEYTCFARNKLGT-AQGSGSLTVKE  306 (745)
Q Consensus       282 ~G~Y~C~~~n~~g~-~~~~~~l~v~~  306 (745)
                      +|.|+|.|.|..+. .+..+.|.|.+
T Consensus       149 ~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          149 SGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CeEEEEEEEcCCCCccCccEEEEEeC
Confidence            99999999997664 44566666654

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.84  E-value=5.8e-21  Score=185.20  Aligned_cols=198  Identities=18%  Similarity=0.263  Sum_probs=121.8

Q ss_pred             CCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecC-----CCeEEEEeCC--Eec
Q psy11701         94 VEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLP-----EPEIHWVHNG--KPI  166 (745)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p-----~~~v~W~~~g--~~~  166 (745)
                      ++.+|+|.|+|.|.   |... ..+.+.+..++.+...|....+.+|++++|.|.+.+.|     .+.+.|+|++  ..+
T Consensus        11 v~~~dsg~Y~C~a~---g~~~-~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~   86 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSF-TNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP   86 (254)
T ss_dssp             -------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred             ecCCccEEEEEcCc---hhhh-hhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence            68899999999997   4333 33455555577788889999999999999999998877     4899999843  222


Q ss_pred             c---------CCCCCCceee----cCceEEEccCCCCCCEEEEEEEEeCCceEEE-EEEEEEee--cCCeeeeCCCceEE
Q psy11701        167 S---------QAPPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYK-DVYVNVLA--HAPEITEAPKDEYT  230 (745)
Q Consensus       167 ~---------~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~-~~~l~v~~--~~p~~~~~~~~~~v  230 (745)
                      .         ......++..    ....|.|.+++.+|+|.|+|.|.|..+.... ...+.|..  .+|.+...+.....
T Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~  166 (254)
T 2c1o_A           87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQ  166 (254)
T ss_dssp             EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHH
T ss_pred             eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhh
Confidence            1         1111223322    2348999999999999999999987654322 23455542  35666654444434


Q ss_pred             ecCceEEEEEEEeec-CC-CeEEEeeCCEEccCc-eEEE----------eecCcEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        231 VDGKTVVLTCRVFGA-PK-PEVNWIHNQKELTGG-RYTI----------LETGDLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       231 ~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~-~~~~----------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      ..|+.++|.|.+.+. |. +.+.|++++..+... ....          ...+.|.|.++..+|+|.|+|.|.|....
T Consensus       167 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          167 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  244 (254)
T ss_dssp             HHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             ccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence            468899999999885 44 469999999887654 1111          11236999999999999999999998654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=174.09  Aligned_cols=167  Identities=17%  Similarity=0.291  Sum_probs=127.0

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .+|.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+...............|.|.+++.+|+|.|+|.+.|..
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            36777778877 8899999999999998 778999999998775321111111234689999999999999999999998


Q ss_pred             ce--EEEEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceE-----EEeecCcEEE
Q psy11701        204 GY--VYKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRY-----TILETGDLKI  274 (745)
Q Consensus       204 g~--~~~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-----~~~~~~~l~i  274 (745)
                      |.  ....+.|.|..  .+|.+...+.. .+.+|+.++|.|.+.+. .+.+.|++++..+.....     .....+.|.|
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i  159 (196)
T 3p2t_A           82 GWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPM  159 (196)
T ss_dssp             EEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEE
T ss_pred             cccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcceEEEe
Confidence            73  23446666653  34566655544 67899999999999874 458999999876643321     1224567999


Q ss_pred             cccCCCCCEEEEEEEEeCCc
Q psy11701        275 TDVAFADSGEYTCFARNKLG  294 (745)
Q Consensus       275 ~~~~~~d~G~Y~C~~~n~~g  294 (745)
                      .+++.+|+|.|+|.|.|..+
T Consensus       160 ~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          160 SPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             CSCCGGGCEEEEEEEECGGG
T ss_pred             CCCcccCCCeEEEEEEcCCC
Confidence            99999999999999999876

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.84  E-value=1.1e-20  Score=177.86  Aligned_cols=169  Identities=20%  Similarity=0.299  Sum_probs=128.4

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------------CCCCeEe--ccCCcEEEEccCCCCCCEEEEEE
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------------PSDRISQ--GNYGKSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------------~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~  105 (745)
                      ...+.+|++++|.|.+.+.|.+.+.|+|.  +..+.            ...++..  .....+|.|.+++.+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            77899999999999999899999999982  22110            1235543  23345799999999999999999


Q ss_pred             EEeCCe--eeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCEeccCCCCCCc---
Q psy11701        106 VSNGVG--EAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASGL-PE-PEIHWVHNGKPISQAPPNPR---  174 (745)
Q Consensus       106 ~~~~~g--~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~~~~~~~~---  174 (745)
                      +.+..+  ......+.|.|.    .+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+|+|..+........   
T Consensus        89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  168 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSK  168 (213)
T ss_dssp             EEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE
T ss_pred             eccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCc
Confidence            999876  344456788888    78888777766666799999999999885 44 49999999998864211111   


Q ss_pred             ---eeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        175 ---RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV  210 (745)
Q Consensus       175 ---~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~  210 (745)
                         .....+.|.|.++..+|+|.|+|.|.|..+.....+
T Consensus       169 ~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          169 SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence               111234689999999999999999999987655543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.84  E-value=1.3e-20  Score=170.99  Aligned_cols=169  Identities=22%  Similarity=0.361  Sum_probs=130.7

Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEe
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      ..+|.+...|....+.+|++++|.|.+.+.+.+ .+.|++++..+..         ..+.|.|.+++.+|+|.|+|.+.|
T Consensus         2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE---------TNSSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC---------CSSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC---------CceEEEEeccceecCEEEEEEcCC
Confidence            457888888888899999999999999887775 7999999998763         357999999999999999999987


Q ss_pred             CCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEe-ecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCC
Q psy11701        202 SLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA  280 (745)
Q Consensus       202 ~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~  280 (745)
                      ..+..  .+.|.|. .++.+... ....+.+|+.++|.|.+. +.|.+.+.|++++..+...    ...+.|.|.++..+
T Consensus        73 ~~~s~--~~~l~V~-~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~----~~~~~L~i~~v~~~  144 (176)
T 1f2q_A           73 VNESE--PVYLEVF-SDWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----YENHNISITNATVE  144 (176)
T ss_dssp             SSCCC--CEEEEEE-CSSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC----CCSSEEEESSCCGG
T ss_pred             ccccc--cEEEEEe-CcceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee----cCCCeEEECCCCcc
Confidence            65533  4556665 24433333 345788999999999995 4566699999999887432    23568999999999


Q ss_pred             CCEEEEEEEEeCCce-EEEEEEEEEeecc
Q psy11701        281 DSGEYTCFARNKLGT-AQGSGSLTVKEHT  308 (745)
Q Consensus       281 d~G~Y~C~~~n~~g~-~~~~~~l~v~~~p  308 (745)
                      |+|.|+|.|.|..+. .+..+.|.|..+|
T Consensus       145 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p  173 (176)
T 1f2q_A          145 DSGTYYCTGKVWQLDYESEPLNITVIKAP  173 (176)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             cCEEEEEEEEeCCcceEecCEEEEEecCC
Confidence            999999999997544 4456788887765

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.84  E-value=5.1e-20  Score=172.90  Aligned_cols=177  Identities=20%  Similarity=0.188  Sum_probs=127.2

Q ss_pred             cCceeEeeCC--CeEEEEEEEeecCCCeEEEEeC---CEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        131 EPEFINAAEE--ETVTFECKASGLPEPEIHWVHN---GKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       131 ~~~~~~v~~G--~~~~l~C~~~~~p~~~v~W~~~---g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      .|....+.+|  +++.|.|.+.+ |.+.++|+++   |..+...  ..........|.|.+++.+|+|.|+|.|.|..+.
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~--~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~   89 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDG--NRISWDSKKGFTIPSYMISYAGMVFCEAKINDES   89 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCS--SSCEEETTTEEEEEGGGTTTCSEEEEEEC----C
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCC--CcccccCCccEEEccCChhcCceEEEEEEECCee
Confidence            4577889999  99999999987 7789999884   6666533  1122345578999999999999999999985444


Q ss_pred             EEEE-EEEEEee-cCCeeeeCC-CceEEecCceEEEEEEEeecCC--CeEEEeeCCEEccCceE---E---------Eee
Q psy11701        206 VYKD-VYVNVLA-HAPEITEAP-KDEYTVDGKTVVLTCRVFGAPK--PEVNWIHNQKELTGGRY---T---------ILE  268 (745)
Q Consensus       206 ~~~~-~~l~v~~-~~p~~~~~~-~~~~v~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~---~---------~~~  268 (745)
                      .... +.|.|.. .+|.+...+ ....+.+|++++|.|.+.+.|.  +.+.|++++..+.....   .         ...
T Consensus        90 ~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~  169 (213)
T 2x1w_L           90 YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF  169 (213)
T ss_dssp             EECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEE
T ss_pred             EEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceee
Confidence            3322 5666643 134444444 4448899999999999998654  47999998876432211   0         111


Q ss_pred             cCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeeccee
Q psy11701        269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI  310 (745)
Q Consensus       269 ~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~  310 (745)
                      .+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+
T Consensus       170 ~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          170 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred             eEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence            336999999999999999999999999999999999887754

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=5.8e-21  Score=183.10  Aligned_cols=214  Identities=14%  Similarity=0.146  Sum_probs=123.8

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC---eEeccCCcEEEEccCCCCCCEEEEEEEEeCC-
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV-  110 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-  110 (745)
                      .+...|. ..+.+|++|+|.|.+.+ +.+.+.|+|+|..+.....   ......+..|.|.+++.+|+|.|+|.+.+.. 
T Consensus         9 ~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~   86 (257)
T 1b6u_A            9 SLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHS   86 (257)
T ss_dssp             EECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSC
T ss_pred             EEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCC
Confidence            3334444 77999999999999974 4679999999875531110   0111234579999999999999999998642 


Q ss_pred             ---eeeEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee--ecCceE
Q psy11701        111 ---GEAKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK--VGPNRI  182 (745)
Q Consensus       111 ---g~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~--~~~~~L  182 (745)
                         ....+..+.|.|..   +|.+...|. ..+.+|++++|.|.+.+. .+.+.|+|+|..+..........  ..+..|
T Consensus        87 ~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l  164 (257)
T 1b6u_A           87 PYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVNGTFQADF  164 (257)
T ss_dssp             TTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSSSCCBEEE
T ss_pred             CccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccCCceeEEE
Confidence               12334557777764   467766665 468999999999999875 46999999998765322111111  125689


Q ss_pred             EEccCCCCCCEEEEEEEEeCCc-----eEEEEEEEEEeecCCeeeeC-CCceEEecCceEEEEEEEeecCCCeEEEeeCC
Q psy11701        183 TIENLRKSDTGNYGCNATNSLG-----YVYKDVYVNVLAHAPEITEA-PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQ  256 (745)
Q Consensus       183 ~i~~v~~~d~G~Y~C~~~~~~g-----~~~~~~~l~v~~~~p~~~~~-~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~  256 (745)
                      .|.+++  |+|.|+|.+.+...     ..+..+.|.|.. +|.+... |.......|..+.|.|.+ |.+.+.|.|...+
T Consensus       165 ~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g-~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~  240 (257)
T 1b6u_A          165 PLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTG-NPSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDLNLD  240 (257)
T ss_dssp             EEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBC-CC--------------------------------------
T ss_pred             Eecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEec-cCCCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHhhhh
Confidence            999998  99999999997532     223346677765 4444422 223345568899999876 5556678887654

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.84  E-value=8.5e-20  Score=183.36  Aligned_cols=268  Identities=16%  Similarity=0.176  Sum_probs=175.8

Q ss_pred             eeeeCCCceEEecCceEEEEEEEeecC-CCeEEEeeCCEEccC-ceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEE
Q psy11701        220 EITEAPKDEYTVDGKTVVLTCRVFGAP-KPEVNWIHNQKELTG-GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQ  297 (745)
Q Consensus       220 ~~~~~~~~~~v~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~  297 (745)
                      .+..++....+..|++++|.|.+.+.+ .+.|.|++++..+.. ........+.|.|.++...|+|.|+|.+   .|...
T Consensus         8 ~~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~~   84 (325)
T 1n26_A            8 AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRPA   84 (325)
T ss_dssp             CCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES---SSSCS
T ss_pred             ccccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe---CCEEe
Confidence            344444444557999999999988764 679999998765421 1222344678999999999999999993   56666


Q ss_pred             EEEEEEEeecceeecCCCcEEEe-cCCeEEEEEEEEec----CCCCcEEEEeeC-Cee-ccCCCCCeEE--EcCCeEEEE
Q psy11701        298 GSGSLTVKEHTHITDQPEDYEVE-AGQSATFRCNAVSD----PSLKLSIVWLRG-SEP-IDFESEPRFV--QSNDYSLTV  368 (745)
Q Consensus       298 ~~~~l~v~~~p~~~~~p~~~~~~-~g~~~~l~C~~~~~----~~~~~~i~W~~~-~~~-~~~~~~~~~~--~~~~~~l~i  368 (745)
                      ..+.|.|..+|.   .|. +... .+....+.|.+...    ....+.+.+.+. +.. ... ......  ........|
T Consensus        85 ~~~~L~V~~pP~---~P~-l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~~~~~-~~~c~~~~~~~~~~c~i  159 (325)
T 1n26_A           85 GTVHLLVDVPPE---EPQ-LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDF-QEPCQYSQESQKFSCQL  159 (325)
T ss_dssp             CEEEEEECCCCC---CCC-CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSSCEEE-EEEEEEETTTTEEEEEE
T ss_pred             eeEEEEeccCCC---CCc-eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCCCCcc-cccCCCCCCCCCEEEEE
Confidence            778899988663   344 4443 34344566666522    111234444432 110 000 000000  012235666


Q ss_pred             ecCC-CCCCEEEEEEEEeCCceEEE-EEEE--EEeccCCCCCCceeEEeec--CceeEEEEEeCCCCCcceeeeeEEEEE
Q psy11701        369 TKSS-ELDSGQYTCRAQTELDFIEA-QATL--TVQVPLEAPSNFTLIQVID--AKKAVVSWNPVSPQSLRGHFRGYKVQT  442 (745)
Q Consensus       369 ~~~~-~~~~g~y~c~a~n~~g~~~~-~~~l--~v~~pp~~P~~~~~~~~~~--~~~v~l~W~~~~~~~~~~~i~~y~i~~  442 (745)
                      ..+. ....+.|+|.|.|..|.... ...+  ....+|.+|.++.+.. ..  .+++.|+|+++.....++.+.+|.|+|
T Consensus       160 ~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~-~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~y  238 (325)
T 1n26_A          160 AVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTA-VARNPRWLSVTWQDPHSWNSSFYRLRFELRY  238 (325)
T ss_dssp             CCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEE-CTTCTTCEEEEEECCTTCCCSSSCEEEEEEE
T ss_pred             CCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEE-ecCCCCEEEEEECCCCccCCCcEeEEEEEEE
Confidence            6554 45778899999999997642 2222  2235689999998876 43  368999999976544566789999999


Q ss_pred             EeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCc---ceEEeC
Q psy11701        443 WTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---IISFVT  499 (745)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~---~~~~~t  499 (745)
                      +....  ..|..+.+ ......++|.+|.+++.|+|+|+|.|..|.|.+|.   .+.+++
T Consensus       239 r~~~~--~~W~~~~~-~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~  295 (325)
T 1n26_A          239 RAERS--KTFTTWMV-KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTP  295 (325)
T ss_dssp             EETTC--SCCEEEEC-GGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEECC
T ss_pred             EeCCC--CCCEEEcc-cCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccceec
Confidence            87754  34444444 44567899999999999999999999988776654   455554

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.84  E-value=1.5e-20  Score=176.88  Aligned_cols=170  Identities=17%  Similarity=0.198  Sum_probs=125.9

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--Eec------------CCCCCeEecc--CCcEEEEccCCCCCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VPI------------NPSDRISQGN--YGKSLIIKHVEFSDQ   99 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~i------------~~~~~~~~~~--~~~~L~i~~~~~~d~   99 (745)
                      +...|..+.+.+|++++|.|.+.+.|.+.|.|+|++  ..+            ....++....  ...+|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence            344578889999999999999999988899999843  221            1124555432  234899999999999


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEee-cCCC-eEEEEeCCEeccCC-CCCC
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGKPISQA-PPNP  173 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~-~~~~  173 (745)
                      |.|+|.+.+..+......+.|.|..   +|.+...+......+|+.++|.|.+.| .|.+ .++|+|+|..+... ....
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~  163 (213)
T 3d9a_L           84 GMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSW  163 (213)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEE
T ss_pred             EEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecC
Confidence            9999999987665444445677765   677766554444558999999999987 5665 89999999988744 1000


Q ss_pred             c-------eeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        174 R-------RKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       174 ~-------~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      .       .....+.|.|.++..+|+|.|+|.|.|....
T Consensus       164 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          164 TDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  202 (213)
T ss_dssp             CCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence            0       0111248999999999999999999998654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.84  E-value=1.8e-20  Score=173.48  Aligned_cols=169  Identities=16%  Similarity=0.235  Sum_probs=117.1

Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      ..+|.|...|.. .+.+|++++|.|.+.+.|. .+.|+|+|..+.............+.|.|.+++.+|+|.|+|.+.|.
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            3 LSKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             CCBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            346788888874 7899999999999988665 99999999877532111112234568999999999999999999998


Q ss_pred             CceEE--EEEEEEEeec--CCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEE--Ee----ecCcE
Q psy11701        203 LGYVY--KDVYVNVLAH--APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYT--IL----ETGDL  272 (745)
Q Consensus       203 ~g~~~--~~~~l~v~~~--~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~----~~~~l  272 (745)
                      .|...  ..+.|.|...  +|.+...+ ...+.+|+.++|.|.+.+.| +.+.|++++..+......  ..    ..+.|
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L  158 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALF  158 (196)
T ss_dssp             TEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEE
T ss_pred             CCcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEE
Confidence            76432  3466777642  45555444 35788999999999999988 899999999876432211  11    12579


Q ss_pred             EEcccCCCCCEEEEEEEEeCCce
Q psy11701        273 KITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       273 ~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      .|.+++.+|+|.|+|.|.|..+.
T Consensus       159 ~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          159 PVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             ECCCCBTTBCEEEEEEEEETTEE
T ss_pred             EeeecCcccCeeEEEEEEccCCC
Confidence            99999999999999999987653

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.84  E-value=1.3e-20  Score=176.76  Aligned_cols=180  Identities=12%  Similarity=0.166  Sum_probs=130.5

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCc--eEEEccCCCCCCEEEEEEEEe
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN--RITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      .+|.|...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+..............  .|.|.+++.+|+|.|+|.+.|
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   85 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   85 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence            4677888877 47899999999999987 6789999999876542111000112234  899999999999999999999


Q ss_pred             CCceEEE--EEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEccc
Q psy11701        202 SLGYVYK--DVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV  277 (745)
Q Consensus       202 ~~g~~~~--~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~  277 (745)
                      ..|....  .+.|.|..  .+|.+...+ ...+.+|++++|.|.+.+.+.+.+.|++++..+..........+.|.|.++
T Consensus        86 ~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v  164 (218)
T 1uct_A           86 GHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPV  164 (218)
T ss_dssp             TTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSC
T ss_pred             CCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEccC
Confidence            8764332  36666654  356666555 457889999999997666777899999999876543332234567999999


Q ss_pred             CCCCCEEEEEEEEeCCc-----eEEEEEEEEEee
Q psy11701        278 AFADSGEYTCFARNKLG-----TAQGSGSLTVKE  306 (745)
Q Consensus       278 ~~~d~G~Y~C~~~n~~g-----~~~~~~~l~v~~  306 (745)
                      +.+|+|.|+|.|.|...     ..+..+.|.|..
T Consensus       165 ~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          165 DLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             CGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             CcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            99999999999997632     123445666654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.84  E-value=1.5e-20  Score=177.15  Aligned_cols=176  Identities=23%  Similarity=0.359  Sum_probs=134.6

Q ss_pred             cCceeEeeCCCeEEEEEEEeecC----CCeEEEEe----------------CCEeccC--CCCCCceee-------cCce
Q psy11701        131 EPEFINAAEEETVTFECKASGLP----EPEIHWVH----------------NGKPISQ--APPNPRRKV-------GPNR  181 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~----------------~g~~~~~--~~~~~~~~~-------~~~~  181 (745)
                      .+....+.+|+++.|.|.+.+.+    .+.+.|++                ++..+..  .....+...       .+..
T Consensus         6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   85 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS   85 (214)
T ss_dssp             CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred             CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence            34566789999999999998866    46999998                4444431  111223322       3468


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEE-eecCCCeEEEeeCC--EE
Q psy11701        182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQ--KE  258 (745)
Q Consensus       182 L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~~~p~~~i~W~~~~--~~  258 (745)
                      |.|.+++.+|+|.|+|.+.+..|.....+.|.|.. +|.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++  ..
T Consensus        86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~  164 (214)
T 3jz7_A           86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQT  164 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCC
T ss_pred             EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEc-CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCc
Confidence            99999999999999999999999888888898875 4554444334457789999999999 88899999999953  33


Q ss_pred             ccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeec
Q psy11701        259 LTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH  307 (745)
Q Consensus       259 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~  307 (745)
                      +..........+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+
T Consensus       165 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          165 MPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             CCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             cCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            3332222234568999999999999999999999999988888888743

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.84  E-value=5.6e-21  Score=174.76  Aligned_cols=145  Identities=20%  Similarity=0.370  Sum_probs=110.2

Q ss_pred             eeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEcc-CCCCCCEEEEEEEEeCCeeeEEEEEEEE
Q psy11701         43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKH-VEFSDQGSYTCEVSNGVGEAKSYSIDLS  121 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~~~~~~g~~~~~~~~l~  121 (745)
                      ..+.+|++++|.|.+.+ +. .|+|+|||..|...       .+++|.|.+ ++.+|+|.|+|.|.|..|... ..+.+.
T Consensus         9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~-~~~~~~   78 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTY-LYLKAR   78 (186)
T ss_dssp             EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-------CCSEEEEESCCTTTSCEEEEEECSSCCCCCC-EEECCC
T ss_pred             EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-------CCCEEEECCCCccccCEEEEEEEEeCCCcEE-EEEEEE
Confidence            34578999999999987 43 59999999998743       345799999 999999999999998877633 334444


Q ss_pred             EEe--cCeE----------------Eec--C--ce---eEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee
Q psy11701        122 VLA--APYF----------------TVE--P--EF---INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK  176 (745)
Q Consensus       122 V~~--~p~~----------------~~~--~--~~---~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~  176 (745)
                      |..  ++..                ...  +  ..   ..+.+|+++.|.|.+   |.+.++|+|+|..+....      
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~------  149 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLN------  149 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSS------
T ss_pred             EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccC------
Confidence            332  2210                000  0  00   234499999999988   788999999999987322      


Q ss_pred             ecCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701        177 VGPNRITIENLRKSDTGNYGCNATNSLGYV  206 (745)
Q Consensus       177 ~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~  206 (745)
                      ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus       150 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          150 ATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            156789999999999999999999988765

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.84  E-value=1.9e-20  Score=173.77  Aligned_cols=167  Identities=17%  Similarity=0.215  Sum_probs=122.5

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .+|.|...|.. .+.+|++++|.|.+.+.|. .+.|+|+|..+...............|.|.+++.+|+|.|+|.+.|..
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (198)
T 1ugn_A            4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT   81 (198)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence            46778777774 7899999999999998765 799999998774211111223456799999999999999999999987


Q ss_pred             -ce--EEEEEEEEEeec--CCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEE--Eee----cCcE
Q psy11701        204 -GY--VYKDVYVNVLAH--APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYT--ILE----TGDL  272 (745)
Q Consensus       204 -g~--~~~~~~l~v~~~--~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~~----~~~l  272 (745)
                       |.  ....+.|.|...  +|.+...+ ...+.+|++++|.|.+.+. .+.+.|++++..+......  ...    .+.|
T Consensus        82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L  159 (198)
T 1ugn_A           82 AGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIF  159 (198)
T ss_dssp             TEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEE
T ss_pred             CCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEE
Confidence             52  234567777652  35554444 3678899999999999887 6799999999876432221  111    3579


Q ss_pred             EEcccCCCCCEEEEEEEEeCCc
Q psy11701        273 KITDVAFADSGEYTCFARNKLG  294 (745)
Q Consensus       273 ~i~~~~~~d~G~Y~C~~~n~~g  294 (745)
                      .|.+++.+|+|.|+|.|.|..+
T Consensus       160 ~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          160 SVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EECCCCTTSCEEEEEEEECTTS
T ss_pred             EecccCcccCeEEEEEEEeCCC
Confidence            9999999999999999999865

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.84  E-value=2.4e-20  Score=174.92  Aligned_cols=168  Identities=14%  Similarity=0.213  Sum_probs=123.1

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEec------------CCCCCeEecc--CCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPI------------NPSDRISQGN--YGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i------------~~~~~~~~~~--~~~~L~i~~~~~~d~G~  101 (745)
                      ..|....+.+|++++|.|.+.+.|.+.+.|+|+  +..+            ....++....  ...+|.|.+++.+|+|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   84 (210)
T 1lk3_L            5 TQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAI   84 (210)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             ECCCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeE
Confidence            337888999999999999999988889999984  2222            1124555432  23489999999999999


Q ss_pred             EEEEEEeCCeeeEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEee-cCCC-eEEEEeCCEeccCC-CCC-Cc
Q psy11701        102 YTCEVSNGVGEAKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGKPISQA-PPN-PR  174 (745)
Q Consensus       102 Y~C~~~~~~g~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~-~~~-~~  174 (745)
                      |+|.+.+..+........|.|..   +|.+...+....+.+|+.++|.|.+.| .|.+ .+.|+|+|..+... ... ..
T Consensus        85 Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~  164 (210)
T 1lk3_L           85 YFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTD  164 (210)
T ss_dssp             EEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECC
T ss_pred             EEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCC
Confidence            99999987664443345677765   577766554444558999999999987 4554 89999999988644 100 00


Q ss_pred             ------eeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        175 ------RKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       175 ------~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                            .....+.|.|.++..+|+|.|+|.|.|....
T Consensus       165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          165 QDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             CCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             ccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence                  0111237999999999999999999997653

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.83  E-value=9.4e-20  Score=170.46  Aligned_cols=196  Identities=14%  Similarity=0.153  Sum_probs=134.0

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      .+|++|.++++.....+++.++|+++.+.++ .++|.|+|+......+.......  ........+.+.+|.+++.|.|+
T Consensus         2 ~pP~~P~nl~c~~~~~~~~~c~W~p~~~~~~-~~~Y~l~y~~~~~~~~~~c~~~~--~~~~~~c~~~~~~l~~~~~Y~~~   78 (210)
T 3n06_B            2 LPPGKPEIFKCRSPNKETFTCWWRPGTDGGL-PTNYSLTYHREGETLMHECPDYI--TGGPNSCHFGKQYTSMWRTYIMM   78 (210)
T ss_dssp             CCCCCCEEEEEEBSSSSCEEEEEECCSSSCC-CSEEEEEEEETTCCCCEECSCSS--TTCTTEEEECGGGCCSSSCEEEE
T ss_pred             CCCCCCeEeEEEeCCCCeEEEEECCCCCCCC-CceEEEEEEECCCCccccCCCCC--CCCCeEEEeCCCCcccceeEEEE
Confidence            4789999999999999999999999887554 47999999976543332221100  00123344556789999999999


Q ss_pred             EEEEecCCCCCCcceeeecccC----CCCCCCCCC----CCCcceeEEEeecCcccc-CC-CcceEEEEEeccCCCCCCC
Q psy11701        582 LAGYTKAGDGAESKYLFYVPFK----NPDNVEGRG----STPNNLVISWTAMPEIEH-NA-PHFKYRIFWRRHNTGEAWN  651 (745)
Q Consensus       582 V~a~n~~G~g~~S~~~~~~~~~----~~~~~~~~~----~~p~~~~v~W~~~~~~~~-~g-~i~~y~i~~~~~~~~~~~~  651 (745)
                      |.|.|..|.+.++.........    +|..+.+..    ..+++|.|+|++|..... +| .+..|.|+|+..+.. .+ 
T Consensus        79 V~A~N~~G~~~s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~~-~~-  156 (210)
T 3n06_B           79 VNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAA-EW-  156 (210)
T ss_dssp             EEEEETTEEEECCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTCS-SC-
T ss_pred             EEEEcCCCCeeCCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCCC-CC-
Confidence            9999999988543332211111    111122211    135788899987765442 35 458899988865221 11 


Q ss_pred             ccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCccc-CCC
Q psy11701        652 QDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYN-GPP  730 (745)
Q Consensus       652 ~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~-g~~  730 (745)
                                             .                  . ...+..+.+.|.+|.|++.|.|+|+|.+..|. |+|
T Consensus       157 -----------------------~------------------~-~~~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~w  194 (210)
T 3n06_B          157 -----------------------E------------------I-HFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAW  194 (210)
T ss_dssp             -----------------------E------------------E-EEEETCSEEEECCCCTTCEEEEEEEEEESSSCCCCC
T ss_pred             -----------------------E------------------E-EeccCceEEEEeccCCCCEEEEEEEEecCCCcccCC
Confidence                                   0                  0 01235678999999999999999999999998 999


Q ss_pred             CcceEEeCCCCCcC
Q psy11701        731 SEIISFVTPEGGTK  744 (745)
Q Consensus       731 s~~~~~~t~~~~~~  744 (745)
                      |+++.|+|+++.++
T Consensus       195 S~~~~~~Tp~~~~~  208 (210)
T 3n06_B          195 SPATFIQIPSDFTM  208 (210)
T ss_dssp             CCCEEEECCTTC--
T ss_pred             CCceeEECcCCCcc
Confidence            99999999999865

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.83  E-value=1.8e-19  Score=171.19  Aligned_cols=172  Identities=20%  Similarity=0.251  Sum_probs=119.4

Q ss_pred             cceeEecCCcEEEEEEEeecCCC---eeEEEECCEe-----------cCC------CCCeEec-----cCCcEEEEccCC
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLP---QTIWSKDGVP-----------INP------SDRISQG-----NYGKSLIIKHVE   95 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~---~v~W~~~~~~-----------i~~------~~~~~~~-----~~~~~L~i~~~~   95 (745)
                      +.+.+.+|++++|.|.+.+.+.+   .|.|+|++..           +..      ..|+...     ....+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            44778999999999999876544   6999986532           111      1223221     223589999999


Q ss_pred             CCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCc
Q psy11701         96 FSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPR  174 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~  174 (745)
                      .+|+|.|+|.|.+..|... .  .+.+...+.+...+....+.+|+.+.|.|.+.| .|.+.++|+|++..+........
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~-~--~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~  168 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEK-A--LVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV  168 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEE-E--EEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCC
T ss_pred             hHHCeeEEEEEECCCcEEE-E--EEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEE
Confidence            9999999999999877655 3  344444444445555667889999999999988 59999999996544332222222


Q ss_pred             eeecCce---EEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        175 RKVGPNR---ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       175 ~~~~~~~---L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      ....++.   +.+.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       169 ~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          169 VADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             EECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred             EECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence            2233332   3455788999999999999999998888888775

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.83  E-value=4.7e-20  Score=171.35  Aligned_cols=164  Identities=15%  Similarity=0.216  Sum_probs=118.2

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC---eEeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      +.+...|. ..+.+|++++|.|.+. .+.+.+.|+|+|..+....+   ......+..|.|.+++.+|+|.|+|.+.+..
T Consensus         9 P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~   86 (201)
T 1nkr_A            9 PSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTH   86 (201)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTT
T ss_pred             CeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCC
Confidence            33445555 7799999999999997 46779999999876642111   1112234689999999999999999998642


Q ss_pred             e----eeEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee--cCce
Q psy11701        111 G----EAKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV--GPNR  181 (745)
Q Consensus       111 g----~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~--~~~~  181 (745)
                      .    ...+..+.|.|..   +|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+...........  ....
T Consensus        87 ~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~  164 (201)
T 1nkr_A           87 SPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQAD  164 (201)
T ss_dssp             BTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEE
T ss_pred             CCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEE
Confidence            1    2233556777764   467776665 47899999999999986 5679999999987652111000111  1468


Q ss_pred             EEEccCCCCCCEEEEEEEEeCC
Q psy11701        182 ITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       182 L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      |.|.+++  |+|.|+|.|.+..
T Consensus       165 L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          165 FPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEECC--SCEEEEEEEEETT
T ss_pred             EEeCCcC--CCeeEEEEEEcCC
Confidence            9999998  9999999998763

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.83  E-value=6.1e-20  Score=172.54  Aligned_cols=170  Identities=17%  Similarity=0.255  Sum_probs=123.6

Q ss_pred             eccceeEecCCcEEEEEEEeecC---CCeeEEEECC--Eec------------CCCCCeEecc--CCcEEEEccCCCCCC
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTP---LPQTIWSKDG--VPI------------NPSDRISQGN--YGKSLIIKHVEFSDQ   99 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p---~~~v~W~~~~--~~i------------~~~~~~~~~~--~~~~L~i~~~~~~d~   99 (745)
                      .|....+.+|++++|.|.+.+.|   .+.+.|+|++  ..+            ....|+....  ...+|.|.+++.+|+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   85 (212)
T 1q0x_L            6 QESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDE   85 (212)
T ss_dssp             ECSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCC
Confidence            37888999999999999998877   4789999852  222            1134555432  334899999999999


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEEEEeCCEeccCCCCCC
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWVHNGKPISQAPPNP  173 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W~~~g~~~~~~~~~~  173 (745)
                      |.|+|.+.+..+......+.|.|.    .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+|+|..+.......
T Consensus        86 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  165 (212)
T 1q0x_L           86 AIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETT  165 (212)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC
T ss_pred             EEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecC
Confidence            999999998766444344566773    46777665554445679999999999885 443 899999999886432111


Q ss_pred             c-eee------cCceEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy11701        174 R-RKV------GPNRITIENLRKSDTGNYGCNATNSLGYVYK  208 (745)
Q Consensus       174 ~-~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~  208 (745)
                      . ...      ..+.|.|.++..+|+|.|+|.|.|.......
T Consensus       166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (212)
T 1q0x_L          166 QPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK  207 (212)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             CceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceee
Confidence            1 111      1236899999999999999999998765433

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.83  E-value=7.3e-20  Score=173.53  Aligned_cols=176  Identities=15%  Similarity=0.196  Sum_probs=124.3

Q ss_pred             eccceeEecCCcEEEEEEEeecCC-----CeeEEEECCEecC---------C------CCCeEecc-----CCcEEEEcc
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPL-----PQTIWSKDGVPIN---------P------SDRISQGN-----YGKSLIIKH   93 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~-----~~v~W~~~~~~i~---------~------~~~~~~~~-----~~~~L~i~~   93 (745)
                      ++..+.+.+|++++|.|.+.+.|.     +.+.|+|++..+.         .      ..+..+..     ...+|.|.+
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            445567999999999999987763     3899999763321         1      13343321     234899999


Q ss_pred             CCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC-CEeccCCCCC
Q psy11701         94 VEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN-GKPISQAPPN  172 (745)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~-g~~~~~~~~~  172 (745)
                      ++.+|+|.|+|.+.+ .+. ....+.|.|..+|.....+....+.+|+.+.|.|.+.|.|.+.+.|+++ |..+......
T Consensus        87 v~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~  164 (222)
T 3sbw_C           87 VKLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTT  164 (222)
T ss_dssp             CCGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEE
T ss_pred             cccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccce
Confidence            999999999999998 343 3466888898776543333333678999999999999999999999998 6555421110


Q ss_pred             CceeecCceEE---EccCCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        173 PRRKVGPNRIT---IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       173 ~~~~~~~~~L~---i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      ......++.+.   +..+..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       165 ~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  211 (222)
T 3sbw_C          165 TNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE  211 (222)
T ss_dssp             EECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             EEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence            01111122222   224567899999999999999999888888864

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.83  E-value=2.8e-20  Score=170.74  Aligned_cols=165  Identities=18%  Similarity=0.313  Sum_probs=122.7

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +|.+...|.. .+.+|++++|.|.+.+ +...+.|+|+|..+...............|.|.+++.+|+|.|+|.+.|..+
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   81 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCC
Confidence            5777777776 7999999999999876 4568999999987752111111223456899999999999999999998755


Q ss_pred             eE--EEEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCC
Q psy11701        205 YV--YKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA  280 (745)
Q Consensus       205 ~~--~~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~  280 (745)
                      ..  ...+.|.|..  .+|.+...+ ...+.+|++++|.|.+.+ +.+.+.|++++..+..........+.|.|.+++.+
T Consensus        82 ~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~  159 (188)
T 1oll_A           82 WSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTA  159 (188)
T ss_dssp             ECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGG
T ss_pred             CCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccccccCCCceeEEEECCCCcC
Confidence            33  2345666653  256666555 456889999999999865 45689999998765432222233457999999999


Q ss_pred             CCEEEEEEEEeCC
Q psy11701        281 DSGEYTCFARNKL  293 (745)
Q Consensus       281 d~G~Y~C~~~n~~  293 (745)
                      |+|.|+|.|.|..
T Consensus       160 d~G~Y~C~a~n~~  172 (188)
T 1oll_A          160 HRGTYRCFGSYNN  172 (188)
T ss_dssp             GCEEEEEECEEET
T ss_pred             CCcEEEEEEEcCC
Confidence            9999999998764

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.82  E-value=3.5e-20  Score=169.37  Aligned_cols=159  Identities=17%  Similarity=0.232  Sum_probs=124.6

Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      ..+|.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|+|..         .....+.|.|.+++.+|+|.|+|.+.|.
T Consensus         6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~---------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   74 (184)
T 2gi7_A            6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS---------RYQDQAVLFIPAMKRSLAGRYRCSYQNG   74 (184)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC---------CEESSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc---------ccCcccEEEECcCChhhCceEEEEEEcC
Confidence            357778777775 7899999999999987 7789999999865         2345679999999999999999999998


Q ss_pred             CceE--EEEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccC
Q psy11701        203 LGYV--YKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVA  278 (745)
Q Consensus       203 ~g~~--~~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~  278 (745)
                      .|..  ...+.|.|..  .+|.+...+ ...+.+|++++|.|.+.+.+ +.+.|++++..+..........+.|.|.+++
T Consensus        75 ~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~  152 (184)
T 2gi7_A           75 SLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPERWYRASFPIITVT  152 (184)
T ss_dssp             TEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCEEEEESSSEEEET
T ss_pred             CCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCCCceEEEEEccCC
Confidence            7642  2335666643  255666555 45677899999999987654 6899999998775432223345679999999


Q ss_pred             CCCCEEEEEEEEeCCc
Q psy11701        279 FADSGEYTCFARNKLG  294 (745)
Q Consensus       279 ~~d~G~Y~C~~~n~~g  294 (745)
                      .+|+|.|+|.|.|..+
T Consensus       153 ~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          153 AAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             TCCSEEEEEEEECTTS
T ss_pred             ccCCeEEEEEEEeCCC
Confidence            9999999999999754

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.82  E-value=3.1e-20  Score=177.34  Aligned_cols=165  Identities=20%  Similarity=0.342  Sum_probs=123.8

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCC-CeeEEEECCEecC---------C----CCCeE----------eccCCcEEEEc
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPL-PQTIWSKDGVPIN---------P----SDRIS----------QGNYGKSLIIK   92 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~-~~v~W~~~~~~i~---------~----~~~~~----------~~~~~~~L~i~   92 (745)
                      +..|.+..+.+|++++|.|.+.+.|. +.+.|+|++....         .    ..++.          +...+ .|.|.
T Consensus         4 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~L~i~   82 (231)
T 2pet_A            4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG-RLVLA   82 (231)
T ss_dssp             CCCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC-CEEES
T ss_pred             ccCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc-eEEEc
Confidence            45677888999999999999998885 8999998654321         0    11222          33333 49999


Q ss_pred             cCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecC---eEEecCceeEeeCCCeE-EEEEEE-eecCCCeEEEEeCCEecc
Q psy11701         93 HVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP---YFTVEPEFINAAEEETV-TFECKA-SGLPEPEIHWVHNGKPIS  167 (745)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p---~~~~~~~~~~v~~G~~~-~l~C~~-~~~p~~~v~W~~~g~~~~  167 (745)
                      +++.+|+|.|+|.+.+..+...+..+.|.|..+|   .+...+....+.+|+.+ .|.|.+ .+.|.+.+.|+++|..+.
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~  162 (231)
T 2pet_A           83 EAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLE  162 (231)
T ss_dssp             SCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECC
T ss_pred             ccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCc
Confidence            9999999999999998763344577889998774   45556666677899998 999999 889999999999999987


Q ss_pred             CCCC-CCceeec-------------CceEEEccCCCCCCEEEEEEEEeC
Q psy11701        168 QAPP-NPRRKVG-------------PNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       168 ~~~~-~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .... ..+....             .+.|.|.....+|+|.|+|.|.|.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          163 VPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             cccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            5441 1111111             156888766666799999999994

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=6.4e-19  Score=161.39  Aligned_cols=162  Identities=17%  Similarity=0.365  Sum_probs=127.9

Q ss_pred             eEeeCCCeEEEEEEEeecCCC--eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        135 INAAEEETVTFECKASGLPEP--EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       135 ~~v~~G~~~~l~C~~~~~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l  212 (745)
                      ..+.+|+++.|.|.+.+.|.+  .+.|+|+|..+......    .....|.|.  +.+|+|.|+|.+.|..   ...+.|
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~----~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~l   78 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP----GQKTEFKVD--SDDQWGEYSCVFLPEP---MGTANI   78 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC----CSEEEEEEC--GGGCCEEEEEEEESTT---SCEEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc----CCcEEEEEe--chhhCeEEEEEEECCc---CcEEEE
Confidence            357899999999999887666  99999999988744321    123356666  6899999999999832   245677


Q ss_pred             EEeecCCeeeeCCCceEEecCceEEEEEEEeecC-CCeEEEee---CCE-Ecc---CceEEEeecC---cEEEcccC-CC
Q psy11701        213 NVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAP-KPEVNWIH---NQK-ELT---GGRYTILETG---DLKITDVA-FA  280 (745)
Q Consensus       213 ~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p-~~~i~W~~---~~~-~~~---~~~~~~~~~~---~l~i~~~~-~~  280 (745)
                      .|. .+|.+...+....+.+|+.++|.|.+.+.| .+.+.|++   ++. .+.   ..++.+...+   .|.|.++. ..
T Consensus        79 ~V~-~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~  157 (184)
T 3b5h_A           79 QLH-GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA  157 (184)
T ss_dssp             EEC-CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTT
T ss_pred             EEe-cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccc
Confidence            776 478888888777899999999999999999 78999999   443 332   2556655444   79999999 89


Q ss_pred             CCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        281 DSGEYTCFARNKLGTAQGSGSLTVKE  306 (745)
Q Consensus       281 d~G~Y~C~~~n~~g~~~~~~~l~v~~  306 (745)
                      |.|.|+|.|.|..|.....+.|.|..
T Consensus       158 d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          158 DPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             SSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             cCceEEEEEEeCCCcceEEEEEEEec
Confidence            99999999999999988888888753

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.82  E-value=7.2e-20  Score=177.00  Aligned_cols=183  Identities=15%  Similarity=0.198  Sum_probs=131.2

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEecC-----------------CCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPIN-----------------PSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i~-----------------~~~~~~~~~----~~~~L~   90 (745)
                      .+..|....+.+|++++|.|.+.|.|  .+.+.|+|+  +..+.                 ...|+.+..    ...+|.
T Consensus         3 ~l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (256)
T 1nqb_A            3 QLQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQ   82 (256)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEE
Confidence            45667788999999999999998875  679999994  22210                 124555432    235899


Q ss_pred             EccCCCCCCEEEEEEEEeCCee----eEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCC-----eEEEEe
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGE----AKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEP-----EIHWVH  161 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~----~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-----~v~W~~  161 (745)
                      |.+++.+|+|.|+|.+.+..|.    .....+.|.|..+|.+...|....+.+|++++|.|.+.+.|.+     .+.|+|
T Consensus        83 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k  162 (256)
T 1nqb_A           83 LSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYL  162 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEE
Confidence            9999999999999999987552    2224467888888888888888899999999999999887764     999999


Q ss_pred             --CCEeccC---------CCCCCceee----cCceEEEccCCCCCCEEEEEEEEeCCceEE-EEEEEEEeecC
Q psy11701        162 --NGKPISQ---------APPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHA  218 (745)
Q Consensus       162 --~g~~~~~---------~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~-~~~~l~v~~~~  218 (745)
                        +|..+..         .....++..    ....|.|.+++.+|+|.|+|.+.+...... ....|.|...+
T Consensus       163 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~  235 (256)
T 1nqb_A          163 QKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRAA  235 (256)
T ss_dssp             ECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC--
T ss_pred             ECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECCC
Confidence              5654310         011122221    235799999999999999999987543222 22456665433

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=7.6e-20  Score=174.06  Aligned_cols=176  Identities=15%  Similarity=0.181  Sum_probs=126.9

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      +.+...|.. .+.+|++|+|.|.+.+ +...+.|+|+|..+... .+.........|.|.+++.+|+|.|+|.+.+..+.
T Consensus         8 P~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~   85 (242)
T 1p6f_A            8 PFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELW   85 (242)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCcc
Confidence            344556665 8999999999999874 45689999999876421 11111233458999999999999999999876443


Q ss_pred             -eEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCC
Q psy11701        113 -AKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLR  188 (745)
Q Consensus       113 -~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~  188 (745)
                       ..+..+.|.|..   +|.+...|. ..+.+|++++|.|.+.+. .+.+.|+|+|..+...   .........|.|.+++
T Consensus        86 s~~S~~~~L~V~~~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~---~~~~~~~~~l~I~~v~  160 (242)
T 1p6f_A           86 SEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ---RGYGKVQAEFPLGPVT  160 (242)
T ss_dssp             CCCCCCEEEEEECCSCCCEEEEESC-SEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEE---EEECSSEEEEEEEECC
T ss_pred             ccCCcceEEEeecccCCCceEccCC-CccCCCCcEEEEEecCCC-CCEEEEEECCCccCcc---ccCCCceEEEEeCCCc
Confidence             234557777764   677776664 468999999999998764 4599999999766520   0112234689999999


Q ss_pred             CCCCEEEEEEEEeCCc---eEEEEEEEEEee
Q psy11701        189 KSDTGNYGCNATNSLG---YVYKDVYVNVLA  216 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g---~~~~~~~l~v~~  216 (745)
                      .+|+|.|+|.+.|...   ..+..+.|.|..
T Consensus       161 ~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          161 TAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             GGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             cccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            9999999999998641   223346666664

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.82  E-value=3e-20  Score=179.56  Aligned_cols=258  Identities=13%  Similarity=0.137  Sum_probs=112.3

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCCCe-EeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSDRI-SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      .+.|++..|.+|++++|+|.+.. +.+ .+.|.-   .+. .... ..+.....|.|.+++.+  |.|+|++. ..|...
T Consensus         3 ~v~P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t---~l~-~~~~~~~g~~~~~~~l~~v~~~--~~y~C~~~-~~~~~~   74 (291)
T 1mq8_A            3 SVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIET---PLP-KKELLLPGNNRKVYELSNVQED--SQPMCYSN-CPDGQS   74 (291)
T ss_dssp             EEECSEEEECTTCEEEEEEEECC-SSCSEEEEEC---SSC-CCCCCCSCSSEEEEEEESCCSC--CCCEEEEE-CSSCEE
T ss_pred             EEeCCccEEcCCCeEEEEEeCCC-CCCccceEEe---cCC-CcccccCCCceEEEEEEecccC--CeEEEEEE-cCCccE
Confidence            35677889999999999999964 445 488853   111 1111 11112235888888854  46999996 445666


Q ss_pred             EEEEEEEEEecCeE-EecCceeEeeCCCeEEEEEEEee-cCCC--eEEEEeCCEeccCCCCCCceeecCceEEEccCCCC
Q psy11701        115 SYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASG-LPEP--EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKS  190 (745)
Q Consensus       115 ~~~~~l~V~~~p~~-~~~~~~~~v~~G~~~~l~C~~~~-~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~  190 (745)
                      +..+.|.|..+|.- .+.+....+.+|+.++|.|.+.+ .|..  .|+|+|+++.+......  .......|.+.....+
T Consensus        75 ~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~--~~~~~~~l~~~~~~~D  152 (291)
T 1mq8_A           75 TAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--GEPAEVTTTVLVRRDH  152 (291)
T ss_dssp             EEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC--BTTEEEEEECCCSSSC
T ss_pred             EEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC--CCCceEEEEeeeeecc
Confidence            78889999988754 23333345889999999999977 4544  58999999887633211  0112246777777777


Q ss_pred             CCEEEEEEEEeCCce--------EEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC---eEEEeeCCEEc
Q psy11701        191 DTGNYGCNATNSLGY--------VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP---EVNWIHNQKEL  259 (745)
Q Consensus       191 d~G~Y~C~~~~~~g~--------~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~---~i~W~~~~~~~  259 (745)
                      |.+.|+|+|.+..+.        .+....+.|...|+..........+.+|+.++|.|.+.|.+++   .+.|.+++..+
T Consensus       153 ~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l  232 (291)
T 1mq8_A          153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL  232 (291)
T ss_dssp             SSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------------------------------
T ss_pred             CCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEec
Confidence            777999999986542        2233567776544331111112357789999999999997554   59999999887


Q ss_pred             cCceEEEeecCcEEEccc---CCC--CCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        260 TGGRYTILETGDLKITDV---AFA--DSGEYTCFARNKLGTAQGSGSLTVKE  306 (745)
Q Consensus       260 ~~~~~~~~~~~~l~i~~~---~~~--d~G~Y~C~~~n~~g~~~~~~~l~v~~  306 (745)
                      ....  ....+.+.+...   ..+  +.+.|+|.+.+..........|.|..
T Consensus       233 ~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~  282 (291)
T 1mq8_A          233 NPTV--TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS  282 (291)
T ss_dssp             ----------------------------------------------------
T ss_pred             Ccee--eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence            6432  112233433333   233  35677788887544455666677755

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.82  E-value=1.3e-18  Score=163.79  Aligned_cols=189  Identities=18%  Similarity=0.169  Sum_probs=150.2

Q ss_pred             cceeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEc---CCeEEEEecCCCCCCEEEEEEE
Q psy11701        307 HTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQS---NDYSLTVTKSSELDSGQYTCRA  383 (745)
Q Consensus       307 ~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a  383 (745)
                      +|.+ ..|....+..|+.+.|.|.+.+.|.  +.+.|++++..+......++...   ....|.|..+...|.|.|+|.|
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFAYPS--ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEEESC--CEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEeecCC--CEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence            4555 4666688899999999999999987  68999999998875433344333   3568999999999999999999


Q ss_pred             EeCCceEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEc-cCce
Q psy11701        384 QTELDFIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN-KGES  462 (745)
Q Consensus       384 ~n~~g~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~-~~~~  462 (745)
                      .|..|.....+.+.+..+|.+|..+.+.  ....++.|.|.++ ....+.++.+|.|+|+......+........ ....
T Consensus        96 ~n~~g~~~~~~~l~v~~~P~~p~~~~~~--~~~~~~~l~w~~p-~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~  172 (215)
T 3mtr_A           96 VNRIGQESLEFILVQADTPSSPSIDQVE--PYSSTAQVQFDEP-EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME  172 (215)
T ss_dssp             ECSSCEEEEEEEEEECCCCCCCEEEEEE--EETTEEEEEEECC-SCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHH
T ss_pred             EECCCceEEEEEEEECCCCCCCcceEEE--EecceEEEEEecC-CccCCCceEEEEEEEEECCCCccccccccccccccc
Confidence            9999999999999999999999877763  5678899999974 3345668999999888766543222222221 1223


Q ss_pred             eEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCCC
Q psy11701        463 TTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       463 ~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~  501 (745)
                      ..++|.+|.+++.|.|+|.|.|..|.|.+|..+.++|.+
T Consensus       173 ~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          173 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             TEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             ccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence            789999999999999999999999999999999988753

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.82  E-value=1.1e-19  Score=171.79  Aligned_cols=178  Identities=17%  Similarity=0.266  Sum_probs=130.1

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCC---eeEEEECCEecCCC------------------CCeEec-----cCCcEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLP---QTIWSKDGVPINPS------------------DRISQG-----NYGKSLI   90 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~---~v~W~~~~~~i~~~------------------~~~~~~-----~~~~~L~   90 (745)
                      +..|+.+.+.+|++++|.|.+.+.|.+   .|.|+|++..+...                  .++.+.     ....+|.
T Consensus         3 l~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~   82 (218)
T 4frw_A            3 LETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVL   82 (218)
T ss_dssp             EECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEE
T ss_pred             EeCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEE
Confidence            345677889999999999999988766   48999987654321                  122221     1234799


Q ss_pred             EccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCe-EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCC
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY-FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQA  169 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~-~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~  169 (745)
                      |.+++.+|+|.|.|.+.+..+........+.+..++. ....+....+..|+.+.|.|.+.+.|.+.++|++++..+...
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~  162 (218)
T 4frw_A           83 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSS  162 (218)
T ss_dssp             ESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEE
T ss_pred             EeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccC
Confidence            9999999999999999876555554555555655443 344455667788999999999999999999999998876532


Q ss_pred             CCC--CceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        170 PPN--PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       170 ~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      ...  .......+.|.|.++..+|+|.|+|.|.|..|.....+.+.|
T Consensus       163 ~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          163 RSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             EEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             ceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            110  111122357999999999999999999999887665554443

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.82  E-value=2.1e-20  Score=175.48  Aligned_cols=173  Identities=27%  Similarity=0.463  Sum_probs=135.2

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEecc---------CCCCCCceeecCceEEEccCCCCCCEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS---------QAPPNPRRKVGPNRITIENLRKSDTGNY  195 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~---------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  195 (745)
                      ++.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.         ......+.......|.|.+++.+|+|.|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y   83 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY   83 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEE
Confidence            4456667888889999999999999998889999999876521         1122334445558999999999999999


Q ss_pred             EEEEEeCCc--eEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEE-eecCCCeEEEeeCCEEccCce---------
Q psy11701        196 GCNATNSLG--YVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELTGGR---------  263 (745)
Q Consensus       196 ~C~~~~~~g--~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~---------  263 (745)
                      +|.+.+..|  .....+.|.|.. +|.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+....         
T Consensus        84 ~C~~~~~~g~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~  162 (209)
T 1nbq_A           84 TCMVSEEGGNSYGEVKVKLIVLV-PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS  162 (209)
T ss_dssp             EEEEEETTSSCEECCEEECCEEB-CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTC
T ss_pred             EEEEecCCCCccceEEEEEEEec-CCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeecc
Confidence            999999865  334456677764 6666555666678999999999996 888999999999988765321         


Q ss_pred             -EEE-eecCcEEEcccCCCCCEEEEEEEEeCCceEEE
Q psy11701        264 -YTI-LETGDLKITDVAFADSGEYTCFARNKLGTAQG  298 (745)
Q Consensus       264 -~~~-~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~  298 (745)
                       +.. ...+.|.|.++..+|.|.|+|.|.|..|....
T Consensus       163 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  199 (209)
T 1nbq_A          163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMT  199 (209)
T ss_dssp             CCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEE
T ss_pred             ceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccc
Confidence             111 13458999999999999999999999988733

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.81  E-value=3.9e-20  Score=188.10  Aligned_cols=200  Identities=19%  Similarity=0.288  Sum_probs=157.2

Q ss_pred             CCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee
Q psy11701         98 DQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV  177 (745)
Q Consensus        98 d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~  177 (745)
                      +.|.|+|.+.+...     .+.+.+..+|.+...+....+.+|+++.|.|.+.|.|.+.+.|++++..+...... ....
T Consensus       136 ~~~~~~C~~~~~l~-----~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~-~~~~  209 (347)
T 2ifg_A          136 PEQKLQCHGQGPLA-----HMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-SGGL  209 (347)
T ss_dssp             GGGCCCCSSSSCSS-----CCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-CCCS
T ss_pred             cccCCCCCCChHHh-----cCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc-ceec
Confidence            56889998865221     12233445788888888889999999999999999999999999998765422111 1223


Q ss_pred             cCceEEEccCCCCCCE-EEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCC
Q psy11701        178 GPNRITIENLRKSDTG-NYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQ  256 (745)
Q Consensus       178 ~~~~L~i~~v~~~d~G-~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~  256 (745)
                      ..+.|.|.+++.+|+| .|+|.|.|..|.....+.|.|.. +|.+    ....+.+|+.++|.|.+.|.|.+.+.|++++
T Consensus       210 ~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~-~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g  284 (347)
T 2ifg_A          210 PSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF-PASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNG  284 (347)
T ss_dssp             SEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBE-EEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETT
T ss_pred             ccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcC-CCee----eeccCccCceEEEEEEeeecCCCcEEEEeCC
Confidence            4568999999999999 99999999999887777777764 5554    1123457999999999999999999999999


Q ss_pred             EEccCceEEEe-----------ecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc
Q psy11701        257 KELTGGRYTIL-----------ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT  308 (745)
Q Consensus       257 ~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p  308 (745)
                      ..+....+...           ..+.|.|.+++..|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus       285 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          285 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             EECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             EECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            98875433221           24569999999999999999999999999998888887654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.81  E-value=2.2e-19  Score=173.72  Aligned_cols=174  Identities=18%  Similarity=0.290  Sum_probs=127.5

Q ss_pred             ecCceeEeeCCCeEEEEEEEee---cCCCeEEEEeCCEecc-----C----------------------CCCCCceee--
Q psy11701        130 VEPEFINAAEEETVTFECKASG---LPEPEIHWVHNGKPIS-----Q----------------------APPNPRRKV--  177 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~---~p~~~v~W~~~g~~~~-----~----------------------~~~~~~~~~--  177 (745)
                      ..+....+.+|+++.|.|.+.+   .|.+.+.|+|++....     .                      .....+...  
T Consensus         7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J            7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            3455778999999999999987   7888999999875430     0                      011122222  


Q ss_pred             -cCceEEEccCCCCCCEEEEEEEEeCCce-----EEEEEEEEEeec--CCeeeeC-CCceEEecCceEEEEEEEeecCCC
Q psy11701        178 -GPNRITIENLRKSDTGNYGCNATNSLGY-----VYKDVYVNVLAH--APEITEA-PKDEYTVDGKTVVLTCRVFGAPKP  248 (745)
Q Consensus       178 -~~~~L~i~~v~~~d~G~Y~C~~~~~~g~-----~~~~~~l~v~~~--~p~~~~~-~~~~~v~~g~~~~l~C~~~~~p~~  248 (745)
                       ++..|.|.+++.+|+|.|+|.+.+..+.     ....+.|.|...  +|.+... +....+.+|+.++|.|.+.+.|.+
T Consensus        87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p  166 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA  166 (250)
T ss_dssp             TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC
T ss_pred             CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC
Confidence             2358999999999999999999987664     245677888753  3444433 445667789999999999999999


Q ss_pred             eEEEeeCCEEccC-------------------------ceEEEeecCcEEEcccCCCCCEEEEEEEEeCC---ceEEEEE
Q psy11701        249 EVNWIHNQKELTG-------------------------GRYTILETGDLKITDVAFADSGEYTCFARNKL---GTAQGSG  300 (745)
Q Consensus       249 ~i~W~~~~~~~~~-------------------------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~---g~~~~~~  300 (745)
                      .+.|++++..+..                         .+......+.|.|.++..+|+|.|+|.|.|..   |.....+
T Consensus       167 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~  246 (250)
T 2fbo_J          167 NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST  246 (250)
T ss_dssp             EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEE
T ss_pred             eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeE
Confidence            9999999876643                         11222233689999999999999999999954   4555555


Q ss_pred             EEE
Q psy11701        301 SLT  303 (745)
Q Consensus       301 ~l~  303 (745)
                      .|.
T Consensus       247 ~l~  249 (250)
T 2fbo_J          247 ILK  249 (250)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.81  E-value=2.4e-19  Score=168.56  Aligned_cols=196  Identities=12%  Similarity=0.147  Sum_probs=140.1

Q ss_pred             ccCCCCCCceeEEee-cCceeEEEEEeCCCCCcceeeeeEEEEEEeccCC----CCceeEEEE-ccCceeEEEecccccC
Q psy11701        400 VPLEAPSNFTLIQVI-DAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDG----EGSIRELIV-NKGESTTTEVDKFVPA  473 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~-~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~----~~~~~~~~~-~~~~~~~~~i~~L~~~  473 (745)
                      .||.+|.++.+.. . ..+++.+.|+++..  .+ ....|.|.|+.....    ...+..... .......+.+.+|.++
T Consensus         3 ~pP~~P~~l~c~~-~~~~~~~~~~W~p~~~--~~-~~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~   78 (215)
T 1cd9_B            3 YPPASPSNLSCLM-HLTTNSLVCQWEPGPE--TH-LPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLY   78 (215)
T ss_dssp             CCCCCCEEEEEEE-ETTTTEEEEEEECCSC--CS-SCCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTT
T ss_pred             CCCCCCeeeeeec-CCCcccEEEEecCCCC--CC-CceeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccc
Confidence            5789999999876 5 57899999998643  22 245799998865421    111111111 1224456778899999


Q ss_pred             cceeEEEEEecCCCCCCCCcceEEeCCC-CCCCCCCceeEEEc------CCceEEEEeeCCCCCCCceeeEEEEEE-EcC
Q psy11701        474 SKNFARVLAFNGAYNGPPSEIISFVTPE-GVPGTVQSLEAIPL------GSSAFYLKWVKPEQPNGVLMGYKIKYQ-SVK  545 (745)
Q Consensus       474 ~~Y~~~V~a~n~~G~g~~S~~~~~~t~~-~~P~~p~~~~~~~~------~~~~i~l~W~~p~~~~g~i~~Y~v~~~-~~~  545 (745)
                      +.|.|+|.|.|..|.+. +..+.+.+.. ..|++|.++.+...      +.+++.|+|++|...+..+.+|.|+|+ ..+
T Consensus        79 ~~Y~~~V~A~N~~G~~~-s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~~l~Y~v~y~~~~~  157 (215)
T 1cd9_B           79 QYMAIWVQAENMLGSSE-SPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLK  157 (215)
T ss_dssp             SCEEEEEEEEETTEEEE-CCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESST
T ss_pred             eEEEEEEEEECCCCCcc-CccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCCCCeEEEEEEEEEccCCC
Confidence            99999999999999863 4445565444 46888988887765      678899999999765555689999999 555


Q ss_pred             CcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCC
Q psy11701        546 GTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNP  605 (745)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~  605 (745)
                      ...|....     ........+.|.+|.|++.|.|+|+|.+..|.|.+|+++..+...++
T Consensus       158 ~~~w~~~~-----~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T~  212 (215)
T 1cd9_B          158 GANWTLVF-----HLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPT  212 (215)
T ss_dssp             TCCCEEEE-----EEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECCC
T ss_pred             CCCcEEEe-----cccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceecC
Confidence            44433211     11234578999999999999999999999998887777655555554

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.81  E-value=1.7e-19  Score=174.06  Aligned_cols=186  Identities=16%  Similarity=0.255  Sum_probs=122.8

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCe-----eEEEECCEecCC-----------------CCCeE---eccCCc
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQ-----TIWSKDGVPINP-----------------SDRIS---QGNYGK   87 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~-----v~W~~~~~~i~~-----------------~~~~~---~~~~~~   87 (745)
                      |...+..|....+.+|++++|.|.+.|.|.+.     +.|+|++.....                 ..++.   ......
T Consensus         3 ~~v~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (248)
T 3pv7_A            3 LKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDA   82 (248)
T ss_dssp             EEEECSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBC
T ss_pred             eEEEEeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcE
Confidence            34445566777899999999999999888775     999996432210                 01111   011234


Q ss_pred             EEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEee-cCCC-eEEEEeCCEe
Q psy11701         88 SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGKP  165 (745)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~  165 (745)
                      +|.|.+++.+|+|.|+|.+.+..+... ..+.|.|..+|.+...+.. .+..|+.+.|.|.+.+ .|.+ .++|+++|+.
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~-~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~  160 (248)
T 3pv7_A           83 SLRLPGIQLEEAGEYRCEVVVTPLKAQ-GTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQK  160 (248)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTEEEE-EEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSS
T ss_pred             EEEeCCCCHHHCeEEEEEEEeCCccce-eEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCcc
Confidence            699999999999999999999877654 6789999999988777663 3556888889999998 7888 9999999965


Q ss_pred             ccCCC-------------CCCceeecCceEEEccCCCCCCEEEEEEEEeCCce--EEEEEEEEEeecCCeee
Q psy11701        166 ISQAP-------------PNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY--VYKDVYVNVLAHAPEIT  222 (745)
Q Consensus       166 ~~~~~-------------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~--~~~~~~l~v~~~~p~~~  222 (745)
                      +....             ...........|.|.....+|+|.|+|.|.|..+.  ....+.|.|  ..|.+.
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V--~~p~~~  230 (248)
T 3pv7_A          161 FPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA--ARHSLS  230 (248)
T ss_dssp             SCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC----------
T ss_pred             CCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE--cCCCCC
Confidence            43210             00011112346888899999999999999998876  444566666  344443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.81  E-value=3.3e-20  Score=172.07  Aligned_cols=154  Identities=20%  Similarity=0.263  Sum_probs=110.8

Q ss_pred             EecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE-
Q psy11701         45 ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL-  123 (745)
Q Consensus        45 v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~-  123 (745)
                      +.+|++++|.|.+   |.+.|.|+|||..|...     ...+++|.|.+++.+|+|.|+|.+.+...    ..+.|.|. 
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-----~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s----~~~~v~v~~   82 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-----TEDKKKWNLGSNAKDPRGMYQCKGSQNKS----KPLQVYYRM   82 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-----ESSCCCEEEEEGGGCCEEEEEEESSSSCC----CCEEEEEEC
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-----CCCCCeEEeCCCCcCCCEEEEEEecCCCC----eeEEEEEEE
Confidence            5689999999998   77899999999988532     12456899999999999999999754322    12344443 


Q ss_pred             --------------------------e----cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCC
Q psy11701        124 --------------------------A----APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP  173 (745)
Q Consensus       124 --------------------------~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~  173 (745)
                                                .    ++.+...|. ....+|++++|.|.  +.|.+.+.|+|+|..+.......
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~  159 (204)
T 1sy6_A           83 GSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDK  159 (204)
T ss_dssp             ------------------------------------CCCC-EEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCT
T ss_pred             eccccccccccccccccccccccccccccccccceecCCc-eeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCc
Confidence                                      0    222222222 22238999999998  77888999999999886543333


Q ss_pred             ceeecCceEEEccC-CCCCCEEEEEEEEeCCceE-EEEEEEE
Q psy11701        174 RRKVGPNRITIENL-RKSDTGNYGCNATNSLGYV-YKDVYVN  213 (745)
Q Consensus       174 ~~~~~~~~L~i~~v-~~~d~G~Y~C~~~~~~g~~-~~~~~l~  213 (745)
                      .....++.|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.
T Consensus       160 ~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~  201 (204)
T 1sy6_A          160 NIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR  201 (204)
T ss_dssp             TEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred             eEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence            33445789999999 9999999999999998862 3334443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.81  E-value=1.1e-18  Score=160.64  Aligned_cols=157  Identities=17%  Similarity=0.248  Sum_probs=117.1

Q ss_pred             eccceeEecCCcEEEEEEEee-cCCCeeEEEECCEecC---CC---------------CCeEeccCCcEEEEccCCCCCC
Q psy11701         39 TRKKEVALRNKKVELFCIFGG-TPLPQTIWSKDGVPIN---PS---------------DRISQGNYGKSLIIKHVEFSDQ   99 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~~i~---~~---------------~~~~~~~~~~~L~i~~~~~~d~   99 (745)
                      .|..+.+.+|++|+|.|.+.+ .+.+.|.|+|++..|.   .+               +|+.+. .+.+|+|.+++.+|+
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~   82 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-QSYSLQLSNLKMEDT   82 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-TTCCEEECSCCGGGC
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-CCeEEEECCCCcccC
Confidence            456678999999999999975 4556999999986542   11               245554 356899999999999


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEEEecCe---EEecCceeEeeCCC-eEEEEEEEeec-CCCeEEEEeCCEeccCCCCCCc
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSVLAAPY---FTVEPEFINAAEEE-TVTFECKASGL-PEPEIHWVHNGKPISQAPPNPR  174 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V~~~p~---~~~~~~~~~v~~G~-~~~l~C~~~~~-p~~~v~W~~~g~~~~~~~~~~~  174 (745)
                      |.|+|.+.+..+... ..+.|.|..++.   +...+  ..+..|. .++|.|.+.+. |.+.+.|+++|..+..      
T Consensus        83 G~Y~C~~~~~~~~~~-~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~------  153 (193)
T 2if7_A           83 GSYRAQISTKTSAKL-SSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS------  153 (193)
T ss_dssp             EEEEEEEECSSCEEE-EEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES------
T ss_pred             ceEEEEEEecCCCeE-EEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC------
Confidence            999999998877654 578888876543   33332  2234565 89999999984 5789999999987642      


Q ss_pred             eeecCceEEEccCCCC-CCEEEEEEEEeCCceEEEE
Q psy11701        175 RKVGPNRITIENLRKS-DTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       175 ~~~~~~~L~i~~v~~~-d~G~Y~C~~~~~~g~~~~~  209 (745)
                          ...|.|.....+ |+|.|+|.|.|..|..+..
T Consensus       154 ----~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          154 ----QPNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             ----SSEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             ----CCeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence                346777655554 8999999999999887543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.81  E-value=2.1e-19  Score=169.75  Aligned_cols=171  Identities=20%  Similarity=0.315  Sum_probs=121.8

Q ss_pred             eeccceeEecCCcEEEEEEEeec-CCCeeEEEECC--Eec--------------C--CCCCeEec--cCCcEEEEccCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKDG--VPI--------------N--PSDRISQG--NYGKSLIIKHVEF   96 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~~--~~i--------------~--~~~~~~~~--~~~~~L~i~~~~~   96 (745)
                      ..| .+.+.+|++++|.|.+.+. |.+.+.|+|..  ...              .  ...|+.+.  ....+|.|.+++.
T Consensus         6 ~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   84 (218)
T 3s96_B            6 QSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQP   84 (218)
T ss_dssp             CCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCc
Confidence            344 7889999999999999998 88999999831  110              0  01344432  2335799999999


Q ss_pred             CCCEEEEEEEEeCCe----eeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEee-cCCC-eEEEEeCCEec
Q psy11701         97 SDQGSYTCEVSNGVG----EAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGKPI  166 (745)
Q Consensus        97 ~d~G~Y~C~~~~~~g----~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~  166 (745)
                      +|+|.|+|.+.+..|    ......+.|.|.    .+|.+...+....+..|+.++|.|.+.+ .|.+ .+.|+|+|..+
T Consensus        85 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l  164 (218)
T 3s96_B           85 EDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPI  164 (218)
T ss_dssp             GGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             ccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEEC
Confidence            999999999988654    222345678887    5677766655555667899999999988 5666 89999999988


Q ss_pred             cCCCCCCce------eecCceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        167 SQAPPNPRR------KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       167 ~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      .........      ....+.|.|.....+|+|.|+|.|.|..+.....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          165 TQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             --------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             cCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            642211111      1112358888888889999999999998765543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.81  E-value=1.9e-18  Score=157.03  Aligned_cols=155  Identities=15%  Similarity=0.166  Sum_probs=117.9

Q ss_pred             eeEecCCcEEEEEEEeecCCC--eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         43 EVALRNKKVELFCIFGGTPLP--QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p~~--~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      +.+.+|++++|.|.+ +.|.|  .|.|++.+..+   .+......+..|.|.+++.+|.|.|.|.+.+..+.. ...+.|
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~~~~~l   91 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF-QHTVQL   91 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEecCCccEEEECccCcccCceEEEEEEeCCCce-EEEEEE
Confidence            699999999999999 88888  99999966555   344445666789999999999999999999987664 478999


Q ss_pred             EEEecCeEEecCceeEeeCCCeEEEEEEEeec-CC----CeEEEEeCCEeccCCCCCC-ce--------------eecCc
Q psy11701        121 SVLAAPYFTVEPEFINAAEEETVTFECKASGL-PE----PEIHWVHNGKPISQAPPNP-RR--------------KVGPN  180 (745)
Q Consensus       121 ~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~----~~v~W~~~g~~~~~~~~~~-~~--------------~~~~~  180 (745)
                      +|+.+|........ .+.+|+.+ |+|.+.+. |.    ++++|+|||+.|....... ..              ..-.+
T Consensus        92 tV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts  169 (210)
T 1gsm_A           92 LVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTE  169 (210)
T ss_dssp             EEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEE
T ss_pred             EEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEE
Confidence            99999976443222 67788889 99999884 64    4899999999996432111 11              01123


Q ss_pred             eEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        181 RITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       181 ~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +|.+.....+|.+.|+|+|.+...
T Consensus       170 ~~~~~~~~~D~~~~~tC~a~~~L~  193 (210)
T 1gsm_A          170 RWRLPPLGTPVPPALYCQATMRLP  193 (210)
T ss_dssp             EEECCCCCSSCCSEEEEEEEEEET
T ss_pred             EEeecCCcccCCceEEEEEEeeCC
Confidence            455557777778999999997653

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.81  E-value=2.7e-19  Score=168.24  Aligned_cols=169  Identities=15%  Similarity=0.182  Sum_probs=125.0

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--Eec------------CCCCCeEec--cCCcEEEEccCCCCCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VPI------------NPSDRISQG--NYGKSLIIKHVEFSDQ   99 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~i------------~~~~~~~~~--~~~~~L~i~~~~~~d~   99 (745)
                      +...|..+.+.+|++++|.|.+.+.|.+.+.|+|++  ...            ....++...  ....+|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3r06_A            4 MTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDI   83 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccC
Confidence            345578889999999999999999888999999832  111            113455433  2334899999999999


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEE---EecCeEEecCceeEeeCCCeEEEEEEEeecCC--CeEEEEeCCEeccCCC-CC-
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASGLPE--PEIHWVHNGKPISQAP-PN-  172 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V---~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~--~~v~W~~~g~~~~~~~-~~-  172 (745)
                      |.|+|.+.+..+........|.|   ..+|.+...+....+..|+.++|.|.+.+.++  +.+.|+|+|..+.... .. 
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~  163 (213)
T 3r06_A           84 GSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSV  163 (213)
T ss_dssp             SEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEE
T ss_pred             EEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEecc
Confidence            99999998865544444566777   56788877777666778999999999988544  4899999999886421 00 


Q ss_pred             C------ceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        173 P------RRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       173 ~------~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      .      ........|.|.....+|+|.|+|.|.|...
T Consensus       164 ~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          164 TDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS  201 (213)
T ss_dssp             CCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             CceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence            0      0111123688888888999999999999764

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.81  E-value=4.3e-19  Score=162.48  Aligned_cols=160  Identities=21%  Similarity=0.320  Sum_probs=124.6

Q ss_pred             eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccC-----------CCCCCceee-------cCceEEEccCCCCCCEEE
Q psy11701        134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ-----------APPNPRRKV-------GPNRITIENLRKSDTGNY  195 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~-----------~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y  195 (745)
                      ...+.+|++++|.|.+.+.|.+.+.|+|++..+..           .....+...       +...|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            45688999999999999888899999999863211           011112211       244699999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEc
Q psy11701        196 GCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKIT  275 (745)
Q Consensus       196 ~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~  275 (745)
                      +|.+.+..+    .+.|.|..    +.. +....+.+|++++|.|.+.+.|.+.+.|++++..+      ....+.|.|.
T Consensus        84 ~C~~~~~~~----~~~l~V~~----~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i~  148 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFG----LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVS  148 (184)
T ss_dssp             EEEETTEEE----EEEEEEEE----EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------EEESSEEEES
T ss_pred             EEEEEcCCC----cEEEEEEE----ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------ccCceEEEEe
Confidence            999987654    34455542    222 34457889999999999999999999999987554      2356789999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc
Q psy11701        276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT  308 (745)
Q Consensus       276 ~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p  308 (745)
                      ++..+|+|.|+|.|.|..+.....+.|.|...|
T Consensus       149 ~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          149 QLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             cCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence            999999999999999999999899999988755

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.81  E-value=5.6e-19  Score=159.38  Aligned_cols=163  Identities=23%  Similarity=0.389  Sum_probs=126.0

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecC-CCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLP-EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .|.+...|....+.+|+++.|.|.+.+.| .+.+.|+|+|..+...         ...+.|.+++.+|+|.|+|.+.+..
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~d~G~Y~C~~~~~~   74 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH---------TQPSYRFKANNNDSGEYTCQTGQTS   74 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC---------CSSEEEEECCGGGCEEEEEEETTSB
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC---------ccceEEEecccccCeEEEEEEeCCC
Confidence            45667778877899999999999998876 5699999999988742         3457788999999999999998754


Q ss_pred             ceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEee-cCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCCC
Q psy11701        204 GYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG-APKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADS  282 (745)
Q Consensus       204 g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  282 (745)
                      ..  ..+.|.|.. ++.+... ....+.+|+.++|.|.+.+ .|.+.+.|++++..+..    ....+.|.|.++..+|+
T Consensus        75 ~s--~~~~l~v~~-~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~----~~~~~~L~i~~v~~~d~  146 (170)
T 3ry4_A           75 LS--DPVHLTVLF-EWLVLQT-PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF----SHLDPTFSIPQANHSHS  146 (170)
T ss_dssp             CC--CCEEEEEEC-CSEEEEC-SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE----ESSCCEEEESSCCGGGC
T ss_pred             ce--EeEEEEEEC-CceEecC-CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc----cCCCCeEEEEeccccCC
Confidence            33  346666764 4444433 3556789999999999954 45679999999987642    12356799999999999


Q ss_pred             EEEEEEEEeCCce-EEEEEEEEE
Q psy11701        283 GEYTCFARNKLGT-AQGSGSLTV  304 (745)
Q Consensus       283 G~Y~C~~~n~~g~-~~~~~~l~v  304 (745)
                      |.|+|.|.|..|. .+..+.|.|
T Consensus       147 G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          147 GDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEEEeCcCccccccEEEEE
Confidence            9999999999886 344455554

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.81  E-value=1.7e-19  Score=174.87  Aligned_cols=173  Identities=15%  Similarity=0.189  Sum_probs=124.5

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecC-----CCeeEEEEC--CEec------------CCCCCeEecc--CCcEEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTP-----LPQTIWSKD--GVPI------------NPSDRISQGN--YGKSLII   91 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p-----~~~v~W~~~--~~~i------------~~~~~~~~~~--~~~~L~i   91 (745)
                      +..+...|....+.+|++++|.|.+.+.|     .+.+.|+|+  +..+            ....++....  ...+|.|
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  117 (254)
T 2c1o_A           38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKI  117 (254)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEE
Confidence            44556678899999999999999998887     479999984  3322            1124555433  2348999


Q ss_pred             ccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEee-cCC-CeEEEEeCCEec
Q psy11701         92 KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASG-LPE-PEIHWVHNGKPI  166 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~  166 (745)
                      .+++.+|+|.|+|.|.+..+........|.|..   +|.+...+......+|+.++|.|.+.| .|. +.++|+|+|..+
T Consensus       118 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  197 (254)
T 2c1o_A          118 SRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  197 (254)
T ss_dssp             SSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEE
T ss_pred             CcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcc
Confidence            999999999999999887554333334566653   677766554444457889999999988 444 469999999987


Q ss_pred             cCC-CC-------CCceeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        167 SQA-PP-------NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       167 ~~~-~~-------~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      ... ..       ........+.|.|.++..+|+|.|+|.|.|....
T Consensus       198 ~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          198 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  244 (254)
T ss_dssp             CTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence            643 00       0001112357999999999999999999998654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.80  E-value=5.3e-19  Score=165.63  Aligned_cols=176  Identities=19%  Similarity=0.251  Sum_probs=130.3

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccC----------------CCCCCcee-ecCceEEEccCCCCCC
Q psy11701        130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ----------------APPNPRRK-VGPNRITIENLRKSDT  192 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~----------------~~~~~~~~-~~~~~L~i~~v~~~d~  192 (745)
                      +.+....+.+|+++.|.|...+.+.+.+.|++++.....                .....+.. ..++.|.|.+++.+|+
T Consensus         4 i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~   83 (208)
T 3r4d_A            4 IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDM   83 (208)
T ss_dssp             EEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGC
T ss_pred             ccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCC
Confidence            344456789999999999988888889999997542211                11112222 2356899999999999


Q ss_pred             EEEEEEEEeCC-ceEEEEEEEEEeecC--CeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccC-ceEEEee
Q psy11701        193 GNYGCNATNSL-GYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG-GRYTILE  268 (745)
Q Consensus       193 G~Y~C~~~~~~-g~~~~~~~l~v~~~~--p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~  268 (745)
                      |.|+|.+.+.. +.....+.|.|...+  |.+...+..  +.+|+.++|.|.+.+.| +.+.|++++..+.. .++....
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~  160 (208)
T 3r4d_A           84 GVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQ  160 (208)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEET
T ss_pred             eEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcC
Confidence            99999999985 555666777776432  455544444  88899999999998866 79999999988753 3444433


Q ss_pred             -cCcEEEcccCCCCCEEEEEEEEeCCceEE-EEEEEEEeecc
Q psy11701        269 -TGDLKITDVAFADSGEYTCFARNKLGTAQ-GSGSLTVKEHT  308 (745)
Q Consensus       269 -~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~-~~~~l~v~~~p  308 (745)
                       .+.|.|.++..+|.|.|+|.|.|..|... ..+.|.|..++
T Consensus       161 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~  202 (208)
T 3r4d_A          161 NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP  202 (208)
T ss_dssp             TTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC---
T ss_pred             CCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCC
Confidence             36899999999999999999999998854 45677766654

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.80  E-value=2.3e-19  Score=169.46  Aligned_cols=175  Identities=18%  Similarity=0.209  Sum_probs=121.8

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEecC-----------------CCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPIN-----------------PSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i~-----------------~~~~~~~~~----~~~~L~   90 (745)
                      .+.+|....+.+|++++|.|.+.|.+  .+.+.|+|+  +..+.                 ...|+.+..    ...+|.
T Consensus         3 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (219)
T 1c1e_H            3 QLVQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQ   82 (219)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEE
T ss_pred             cEeCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEE
Confidence            34567778899999999999998865  679999996  33221                 124555432    235899


Q ss_pred             EccCCCCCCEEEEEEEEeCCee---eEEEEEEEEEEec----CeEEecCceeEeeCCCeEEEEEEEee-cCCC-eEEEEe
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGE---AKSYSIDLSVLAA----PYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVH  161 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~---~~~~~~~l~V~~~----p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~  161 (745)
                      |.+++.+|+|.|+|.+.+..+.   .....+.|.|...    |.+...+....+.+|+.+.|.|.+.| .|.+ .++|++
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  162 (219)
T 1c1e_H           83 INNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (219)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             ECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEe
Confidence            9999999999999999987531   2223456777653    66655444445678999999999998 8988 999999


Q ss_pred             CCEeccCCCCCCce----eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        162 NGKPISQAPPNPRR----KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       162 ~g~~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      +|..+.........    ....+.|.|... ..|+|.|+|.|.|..+.......
T Consensus       163 ~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~~~~  215 (219)
T 1c1e_H          163 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHPASSTKVDKK  215 (219)
T ss_dssp             GTBCTTEEECCCEESSSCEEEEEEEEEESS-STTTSCCEEEEEEGGGTEEEEEE
T ss_pred             CCcccceEecCCcccCCeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCccEEEe
Confidence            99865311111101    011246888444 44669999999998876554443

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.80  E-value=6.5e-19  Score=165.86  Aligned_cols=162  Identities=20%  Similarity=0.274  Sum_probs=117.5

Q ss_pred             EeeccceeEecCCcEEEEEEEeec-------CCCeeEEEECCEe------c-----------CCCCCeEecc----CCcE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT-------PLPQTIWSKDGVP------I-----------NPSDRISQGN----YGKS   88 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~-------p~~~v~W~~~~~~------i-----------~~~~~~~~~~----~~~~   88 (745)
                      +..|..+.+.+|++++|.|.+.+.       +.+.+.|+|++..      +           ....|+.+..    ...+
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s   83 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS   83 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence            445778899999999999999754       4668999998652      1           1124555532    2347


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCeeeEE---EEEEEEEEec---CeEEecCceeEeeCCCeEEEEEEEeec----CCCeEE
Q psy11701         89 LIIKHVEFSDQGSYTCEVSNGVGEAKS---YSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGL----PEPEIH  158 (745)
Q Consensus        89 L~i~~~~~~d~G~Y~C~~~~~~g~~~~---~~~~l~V~~~---p~~~~~~~~~~v~~G~~~~l~C~~~~~----p~~~v~  158 (745)
                      |.|.+++.+|+|.|.|.+.+..+...+   ..+.|.|..+   |.+.. +.  .+.+|+.++|.|.+.+.    |.+.++
T Consensus        84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~  160 (214)
T 2zg1_A           84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFS  160 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred             EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEE
Confidence            999999999999999999987533222   3577888763   44433 22  36799999999999763    788999


Q ss_pred             EEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701        159 WVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV  206 (745)
Q Consensus       159 W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~  206 (745)
                      |++++..+...     .....+.|.|..+..+|+|.|+|.|.|..+..
T Consensus       161 W~~~~~~~~~~-----~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~  203 (214)
T 2zg1_A          161 WTGNALSPLDP-----ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQV  203 (214)
T ss_dssp             EESSTTSSSCS-----SCCCSSEEEECCCTTCCSCEEEEEEECC----
T ss_pred             EeCCCCccCCC-----CceeEEEEEEecccHHcCcEEEEEEEeCCCCc
Confidence            99998654311     12456789999999999999999999976543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.80  E-value=1.5e-19  Score=169.74  Aligned_cols=167  Identities=19%  Similarity=0.278  Sum_probs=125.0

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------------CCCCeEec--cCCcEEEEccCCCCCCEEEEEE
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------------PSDRISQG--NYGKSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------------~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~  105 (745)
                      ...+.+|++++|.|.+.  |.+.+.|+|+  +..+.            ...++...  ....+|.|.+++.+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            77899999999999998  7889999994  32221            22455432  2345799999999999999999


Q ss_pred             EEeCCe-eeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEeec--CCCeEEEEeCCEeccCCCCCCce-e-
Q psy11701        106 VSNGVG-EAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASGL--PEPEIHWVHNGKPISQAPPNPRR-K-  176 (745)
Q Consensus       106 ~~~~~g-~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~g~~~~~~~~~~~~-~-  176 (745)
                      +.+..+ ......+.|.|.    .+|.+...+....+.+|+.++|.|.+.+.  |.+.+.|+|+|..+......... . 
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~  166 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ  166 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceEC
Confidence            999876 344455778887    67888777766556689999999999885  35799999999988642111111 1 


Q ss_pred             -----ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        177 -----VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV  210 (745)
Q Consensus       177 -----~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~  210 (745)
                           ...+.|.|.++..+|+|.|+|.|.|..+.....+
T Consensus       167 ~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          167 SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             TTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             CCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence                 1124689999999999999999999987655543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.80  E-value=1.8e-19  Score=174.56  Aligned_cols=168  Identities=20%  Similarity=0.269  Sum_probs=121.4

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEecC----------------CCCCeEecc----CCcEEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPIN----------------PSDRISQGN----YGKSLII   91 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i~----------------~~~~~~~~~----~~~~L~i   91 (745)
                      ++.+|....+.+|++|+|.|.+.|.|  .+.+.|+|+  +..+.                ...|+.+..    ...+|+|
T Consensus         3 ~~~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   82 (257)
T 1f3r_B            3 QLLESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKM   82 (257)
T ss_dssp             EEEEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEE
T ss_pred             eEECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEE
Confidence            34566677899999999999999875  679999985  22110                134555432    2348999


Q ss_pred             ccCCCCCCEEEEEEEEeCCe--------eeEEEEEEEEEEecC---------------eEEecCceeEeeCCCeEEEEEE
Q psy11701         92 KHVEFSDQGSYTCEVSNGVG--------EAKSYSIDLSVLAAP---------------YFTVEPEFINAAEEETVTFECK  148 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~g--------~~~~~~~~l~V~~~p---------------~~~~~~~~~~v~~G~~~~l~C~  148 (745)
                      .+++.+|+|.|+|.+.+..|        ......+.|.|..+|               .+...|....+.+|++++|.|.
T Consensus        83 ~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  162 (257)
T 1f3r_B           83 NSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCK  162 (257)
T ss_dssp             ESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEE
T ss_pred             CCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEE
Confidence            99999999999999998743        112234577787643               2344566778899999999999


Q ss_pred             EeecCCCeEEEEe--CCEeccC---------CCCCCcee----ecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        149 ASGLPEPEIHWVH--NGKPISQ---------APPNPRRK----VGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       149 ~~~~p~~~v~W~~--~g~~~~~---------~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      +.+.+.+.+.|+|  +|..+..         .....++.    .....|.|.++..+|+|.|+|.|.|..
T Consensus       163 ~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          163 GSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             CSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             ECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            9988888999999  5554310         00112222    123579999999999999999999865

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.80  E-value=2.8e-18  Score=161.23  Aligned_cols=196  Identities=11%  Similarity=0.068  Sum_probs=128.8

Q ss_pred             CCCCCCCceeEEEc-CCceEEEEeeCCCCCCCceeeEEEEEEEcCCccc-CCc-ccccccccCCCcceeeecCCCCCccE
Q psy11701        502 GVPGTVQSLEAIPL-GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV-GPL-LERLPYISDPTTTSAKLAGLEPSTKY  578 (745)
Q Consensus       502 ~~P~~p~~~~~~~~-~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y  578 (745)
                      .+|++|.++.+... ..++++++|+++.+.++ ..+|.|+|+.....-. ... ..............+.+.+|.+++.|
T Consensus         3 ~pP~~P~~l~c~~~~~~~~~~~~W~p~~~~~~-~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y   81 (215)
T 1cd9_B            3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHL-PTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYM   81 (215)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSCCSS-CCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCE
T ss_pred             CCCCCCeeeeeecCCCcccEEEEecCCCCCCC-ceeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccceEE
Confidence            46889999998877 68899999999887554 4679999987543210 000 00000001234567888899999999


Q ss_pred             EEEEEEEecCCCCCCcceeeeccc----CCCCCCCCCCC------CCcceeEEEeecCccccCCCcceEEEEEe-ccCCC
Q psy11701        579 RIHLAGYTKAGDGAESKYLFYVPF----KNPDNVEGRGS------TPNNLVISWTAMPEIEHNAPHFKYRIFWR-RHNTG  647 (745)
Q Consensus       579 ~~~V~a~n~~G~g~~S~~~~~~~~----~~~~~~~~~~~------~p~~~~v~W~~~~~~~~~g~i~~y~i~~~-~~~~~  647 (745)
                      .|+|.|.|..|.+.+.........    .+|..+.+...      .+++|.|+|++|..  .+..+..|.|+|+ ..+ .
T Consensus        82 ~~~V~A~N~~G~~~s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~--~~~~~l~Y~v~y~~~~~-~  158 (215)
T 1cd9_B           82 AIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKP--SEYMEQECELRYQPQLK-G  158 (215)
T ss_dssp             EEEEEEEETTEEEECCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGG--GTTSCEEEEEEEEESST-T
T ss_pred             EEEEEEECCCCCccCccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCC--CCeEEEEEEEEEccCCC-C
Confidence            999999999998754332222111    12222223332      57889999997764  2233479999998 432 2


Q ss_pred             CCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCccc
Q psy11701        648 EAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYN  727 (745)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~  727 (745)
                      ..|..                                         +....+..+.+.|.+|.|++.|.|+|+|.+.+|.
T Consensus       159 ~~w~~-----------------------------------------~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~  197 (215)
T 1cd9_B          159 ANWTL-----------------------------------------VFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLP  197 (215)
T ss_dssp             CCCEE-----------------------------------------EEEEESCEEEEEECCCCSCSCEEEEEEEEESSSC
T ss_pred             CCcEE-----------------------------------------EecccCcceEEEEcCCCCCCEEEEEEEeeECCCC
Confidence            21110                                         0011234567889999999999999999998776


Q ss_pred             C---CCCcceEEeCCCCC
Q psy11701        728 G---PPSEIISFVTPEGG  742 (745)
Q Consensus       728 g---~~s~~~~~~t~~~~  742 (745)
                      |   +||+++.++|++.+
T Consensus       198 G~wS~wS~~~~~~T~e~a  215 (215)
T 1cd9_B          198 GFWSPWSPGLQLRPTMKA  215 (215)
T ss_dssp             CCCCCCCCCEEECCCC--
T ss_pred             CCCcCCCCccceecCCCC
Confidence            4   68899999998753

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.80  E-value=1.5e-18  Score=167.39  Aligned_cols=169  Identities=18%  Similarity=0.235  Sum_probs=122.1

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Eec-----------------CCCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VPI-----------------NPSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~i-----------------~~~~~~~~~~----~~~~L~   90 (745)
                      .+..|....+.+|++++|.|.+.|.|  .+.|.|+|++  ..+                 ....|+.+..    ...+|+
T Consensus         5 ~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   84 (247)
T 2ghw_B            5 QLVQSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQ   84 (247)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             EEEecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEE
Confidence            34556678999999999999999887  5789999842  111                 1134555432    234799


Q ss_pred             EccCCCCCCEEEEEEEEeCCeee-EEEEEEEEEEec---------------CeEEecCceeEeeCCCeEEEEEEEeecCC
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGEA-KSYSIDLSVLAA---------------PYFTVEPEFINAAEEETVTFECKASGLPE  154 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~~-~~~~~~l~V~~~---------------p~~~~~~~~~~v~~G~~~~l~C~~~~~p~  154 (745)
                      |.+++.+|+|.|+|.+.+..+.. ....+.|.|..+               +.+...+....+.+|++++|.|.+.+.|.
T Consensus        85 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~  164 (247)
T 2ghw_B           85 MNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVR  164 (247)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCT
T ss_pred             ECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCcc
Confidence            99999999999999999873322 223356777643               34566677788999999999999999888


Q ss_pred             CeEEEEe--CCEeccC---------CCCCCceee----cCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        155 PEIHWVH--NGKPISQ---------APPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       155 ~~v~W~~--~g~~~~~---------~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +.+.|+|  +|..+..         .....++..    ....|.|.+++.+|+|.|+|.|.+...
T Consensus       165 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~  229 (247)
T 2ghw_B          165 SNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWP  229 (247)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSS
T ss_pred             ceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCC
Confidence            8999999  5554310         011122222    234799999999999999999987543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.80  E-value=4.7e-19  Score=166.97  Aligned_cols=167  Identities=16%  Similarity=0.188  Sum_probs=117.4

Q ss_pred             eccceeEecCCcEEEEEEE-eecC-CCeeEEEECC--Eec------------CCCCCeEec--cCCcEEEEccCCCCCCE
Q psy11701         39 TRKKEVALRNKKVELFCIF-GGTP-LPQTIWSKDG--VPI------------NPSDRISQG--NYGKSLIIKHVEFSDQG  100 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~-~g~p-~~~v~W~~~~--~~i------------~~~~~~~~~--~~~~~L~i~~~~~~d~G  100 (745)
                      .|....+.+|++++|.|.+ .+.+ .+.+.|+|++  ..+            ....|+...  ....+|.|.+++.+|+|
T Consensus         6 qp~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            6 QPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (216)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence            3677889999999999995 4443 5799999943  221            112455543  23348999999999999


Q ss_pred             EEEEEEEeCCe-eeEEEEEEEEEE---ecCeEEecCceeEeeCCCeEEEEEEEee-cCCC-eEEEEeCCEeccCC-CCC-
Q psy11701        101 SYTCEVSNGVG-EAKSYSIDLSVL---AAPYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGKPISQA-PPN-  172 (745)
Q Consensus       101 ~Y~C~~~~~~g-~~~~~~~~l~V~---~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~-~~~-  172 (745)
                      .|+|.+.+..+ ........|.|.   .+|.+...+......+|+.++|.|.+.| .|.+ .++|+|+|..+... ... 
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~  165 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESV  165 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEE
T ss_pred             EEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEec
Confidence            99999998765 222233556665   4666666444333446999999999988 5554 89999999988643 000 


Q ss_pred             Cce------eecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        173 PRR------KVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       173 ~~~------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      ...      ....+.|.|..+..+|+|.|+|.|.|....
T Consensus       166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          166 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             CCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             CcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence            000      011237899999999999999999998644

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.80  E-value=2e-18  Score=177.47  Aligned_cols=270  Identities=16%  Similarity=0.125  Sum_probs=185.5

Q ss_pred             ecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCC--CCEEEEEEEEeCCc
Q psy11701        311 TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL--DSGQYTCRAQTELD  388 (745)
Q Consensus       311 ~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--~~g~y~c~a~n~~g  388 (745)
                      ...|....+..|.++++.|.....     ......++....    ..........+++.++...  ....|.|...    
T Consensus       202 ~ifP~~~vv~~GS~vt~~Ci~~~~-----~~~~~l~~~~~~----~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~----  268 (483)
T 3e0g_A          202 KVFPQDKVILVGSDITFCCVSQEK-----VLSALIGHTNCP----LIHLDGENVAIKIRNISVSASSGTNVVFTTE----  268 (483)
T ss_dssp             CEESCSEEEETTCCEEEEECCSSC-----EEEEESSSCCBC----CEECSSSCEEEEECSCCCCCSSCEEEEEEES----
T ss_pred             EEeccCCEEeCCCCEEEEEEeCcc-----ccceecCcccce----eEEecCCEEEEEEeCCCCccCccceEEEecC----
Confidence            345666778899999999987621     222222222111    0111223446677776542  3357999852    


Q ss_pred             eEEEEEEEEEeccCCCCCCceeEEeecCceeEEEEEeCCCCCccee-eeeEEEEEEeccCCCCceeEEEE---ccCceeE
Q psy11701        389 FIEAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH-FRGYKVQTWTEKDGEGSIRELIV---NKGESTT  464 (745)
Q Consensus       389 ~~~~~~~l~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~-i~~y~i~~~~~~~~~~~~~~~~~---~~~~~~~  464 (745)
                      .......+.+..||.+|+++.+.. ....++.++|+++.....+|+ .+.|.|.|+..+.    ......   .......
T Consensus       269 ~~~~g~~l~vg~PP~~P~nlsC~s-~~~~sltCsW~pg~dt~l~G~~~t~YtL~y~~~g~----~~~C~~~~~~~~~~~~  343 (483)
T 3e0g_A          269 DNIFGTVIFAGYPPDTPQQLNCET-HDLKEIICSWNPGRVTALVGPRATSYTLVESFSGK----YVRLKRAEAPTNESYQ  343 (483)
T ss_dssp             SCEEEEEEEEECCCCCCEEEEEEB-SSTTEEEEEEECCSCCSCCGGGCCEEEEEETTTCC----EEEECCCSSCSCSCEE
T ss_pred             CcccceEEECcCCCCCCCccEEEe-cCCCEEEEEECCCCcCCcCCCCCeeEEEEEEECCC----CccccCCcccCCCEEE
Confidence            234556788999999999999876 677899999999765554454 7899998875321    111111   0123567


Q ss_pred             EEecccccCcceeEEEEEecCCCCCCCCcceEEe-CCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEE
Q psy11701        465 TEVDKFVPASKNFARVLAFNGAYNGPPSEIISFV-TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQS  543 (745)
Q Consensus       465 ~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~-t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~  543 (745)
                      +.+.+|.+.+.|.|+|.|.|..|.+.. . ..+. +....|.||.++++.....+.+.|+|++|...++.+..|.|+|+.
T Consensus       344 C~~~~l~~~t~Y~f~V~A~N~lG~~~S-~-~~~~~~~~VkP~PP~nl~v~~~~stsl~LsW~~P~~~~~~~L~YeVrYr~  421 (483)
T 3e0g_A          344 LLFQMLPNQEIYNFTLNAHNPLGRSQS-T-ILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKK  421 (483)
T ss_dssp             EEEECCTTCCCEEEEEEEECSSCEEEE-E-EEECGGGGBCCCCCEEEEECCSSSSSCCEEEECCSCCTTSBCCCEEEEEC
T ss_pred             EEEccCCCCcEEEEEEEEEeCCCCccc-c-eEEEeccccCCCCCeeeEEEEecCCeEEEEECCCCCCCCceEEEEEEEEE
Confidence            889999999999999999999998763 3 3443 334678999999998778899999999997667788999999998


Q ss_pred             cCCcccCCcccccccccC--CCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCC
Q psy11701        544 VKGTKVGPLLERLPYISD--PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNP  605 (745)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~  605 (745)
                      .+....  +....  +..  .....+.+.+|.|++.|.|+|+|. ..|.|.+|+++......++
T Consensus       422 ~~~~~~--~~~vs--v~~~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~T~  480 (483)
T 3e0g_A          422 SNSVQE--QRNVT--IQGVENSSYLVALDKLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHLTT  480 (483)
T ss_dssp             SSSCCC--EEECC--CBCCSSSBCCCCCCSCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCCCC
T ss_pred             CCCCCc--eEEEE--EeccCCceeEEEEeccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeECC
Confidence            765321  11111  111  233468899999999999999999 7788777776655555554

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.80  E-value=4.8e-20  Score=173.25  Aligned_cols=167  Identities=18%  Similarity=0.273  Sum_probs=121.4

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------------CCCCeEecc--CCcEEEEccCCCCCCEEE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------------PSDRISQGN--YGKSLIIKHVEFSDQGSY  102 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------------~~~~~~~~~--~~~~L~i~~~~~~d~G~Y  102 (745)
                      +|....+.+|++++|.|.+.+.|.+.+.|+|+  +..+.            ...++....  ...+|.|.+++.+|+|.|
T Consensus         5 qp~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   84 (212)
T 1nfd_E            5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (212)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEE
Confidence            37778899999999999998888789999984  33221            124554432  334899999999999999


Q ss_pred             EEEEEeC-C-eeeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCEeccCCCCCCc
Q psy11701        103 TCEVSNG-V-GEAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASGL-PE-PEIHWVHNGKPISQAPPNPR  174 (745)
Q Consensus       103 ~C~~~~~-~-g~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~~~~~~~~  174 (745)
                      +|.+.+. . .........|.|.    .+|.+...+....+.+|+.++|.|.+.|. |. +.++|+|+|..+........
T Consensus        85 ~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~  164 (212)
T 1nfd_E           85 YCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTK  164 (212)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCC
T ss_pred             EEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCC
Confidence            9999963 2 2222233456663    46777665555556789999999999886 55 79999999998875422111


Q ss_pred             e------eecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        175 R------KVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       175 ~------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      .      ....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          165 PSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             ceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            1      111246889999999999999999998764

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.80  E-value=6e-20  Score=208.82  Aligned_cols=232  Identities=14%  Similarity=0.188  Sum_probs=174.5

Q ss_pred             CeEEEEecCCCCCCEEEEEEE-EeCCce----EEEEEEEEEec---cCCCCCCceeEEeecCceeEEEEEeCCCCCccee
Q psy11701        363 DYSLTVTKSSELDSGQYTCRA-QTELDF----IEAQATLTVQV---PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH  434 (745)
Q Consensus       363 ~~~l~i~~~~~~~~g~y~c~a-~n~~g~----~~~~~~l~v~~---pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~  434 (745)
                      ...+.+.++.+...|.|++.| .|..|.    +..+..+.++.   +|.+|.++.+.. .+.+++.|+|+++  ...+|.
T Consensus       548 ~~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~-~s~tsI~LsW~pP--~~~nG~  624 (897)
T 2dtg_E          548 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVS-NSSSQIILKWKPP--SDPNGN  624 (897)
T ss_dssp             CCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEE-CSSSCEEEEEECC--CCSSSS
T ss_pred             ccceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEe-CCCCEEEEEEeCC--CCCCCC
Confidence            356889999999999999999 888775    33333344443   567888888877 7889999999985  456788


Q ss_pred             eeeEEEEEEeccCCCC---------------------------------------------------------------c
Q psy11701        435 FRGYKVQTWTEKDGEG---------------------------------------------------------------S  451 (745)
Q Consensus       435 i~~y~i~~~~~~~~~~---------------------------------------------------------------~  451 (745)
                      +.+|.|.|+.......                                                               .
T Consensus       625 I~~Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~  704 (897)
T 2dtg_E          625 ITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKT  704 (897)
T ss_dssp             CSEEECCEEEECCCCSCTTCSSSCSCCCCCC-------------------------------------------------
T ss_pred             eeEEEEEEEECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhhhhhhhheeee
Confidence            9999998776432100                                                               0


Q ss_pred             eeE-----EE--------------------------EccCceeEEEecccccCcceeEEEEEecCCCCCCC---CcceEE
Q psy11701        452 IRE-----LI--------------------------VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPP---SEIISF  497 (745)
Q Consensus       452 ~~~-----~~--------------------------~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~---S~~~~~  497 (745)
                      |..     +.                          ........++|.+|.|++.|.|+|.|.|..|.+++   +..+.+
T Consensus       705 W~~~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~  784 (897)
T 2dtg_E          705 FEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSA  784 (897)
T ss_dssp             -------------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEE
T ss_pred             EEEccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEE
Confidence            000     00                          00123468999999999999999999999998764   556778


Q ss_pred             eCCC--CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCC
Q psy11701        498 VTPE--GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS  575 (745)
Q Consensus       498 ~t~~--~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~  575 (745)
                      +|.+  .+|++|.++++...+.++|.|+|++|.+++|.|.+|.|+|+..+..........   ........++|.+|.|+
T Consensus       785 ~T~~~~~~p~~P~~l~~~~~~~~sv~LsW~~P~~~nG~I~~Y~V~y~~~~~~~~~~~~~~---~~~~~~~~~~l~~L~pg  861 (897)
T 2dtg_E          785 RTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTR---KHFALERGCRLRGLSPG  861 (897)
T ss_dssp             ECCCCCCCCCCCCCCCCCSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCCCCCCCCS---SSCCCTTCCCCCSCCSS
T ss_pred             eccCccCCCCCCcceEEEeCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCcceEEEEee---eeecccCcEEECCCCCC
Confidence            8876  567889999988889999999999999889999999999987664221111110   01345678999999999


Q ss_pred             ccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        576 TKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       576 t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                       .|.|+|.|.|.+|.|++|+.+.+.+
T Consensus       862 -tY~~rV~A~n~~G~G~~S~~v~~~T  886 (897)
T 2dtg_E          862 -NYSVRIRATSLAGNGSWTEPTYFYV  886 (897)
T ss_dssp             -EECCCCCEEETTBCCCCCCCCEECC
T ss_pred             -cEEEEEEEEeCCcccCCCCCEEEEe
Confidence             5999999999999999998765543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.79  E-value=7.9e-19  Score=168.26  Aligned_cols=172  Identities=16%  Similarity=0.198  Sum_probs=125.0

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--Ee------------cCCCCCeEec--cCCcEEEEccCCCC
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VP------------INPSDRISQG--NYGKSLIIKHVEFS   97 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~------------i~~~~~~~~~--~~~~~L~i~~~~~~   97 (745)
                      ..+...|....+.+|++++|.|.+.+.|.+.+.|+|++  ..            .....++...  ....+|.|.+++.+
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  104 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE  104 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence            34556688899999999999999998888899999832  11            1113455433  23457999999999


Q ss_pred             CCEEEEEEEEeCCeeeEEEEEEEEE---EecCeEEecCceeEeeCCCeEEEEEEEee-cC-CCeEEEEeCCEeccCCC--
Q psy11701         98 DQGSYTCEVSNGVGEAKSYSIDLSV---LAAPYFTVEPEFINAAEEETVTFECKASG-LP-EPEIHWVHNGKPISQAP--  170 (745)
Q Consensus        98 d~G~Y~C~~~~~~g~~~~~~~~l~V---~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p-~~~v~W~~~g~~~~~~~--  170 (745)
                      |+|.|+|.+.+..+........|.|   ..+|.+...+....+.+|+.++|.|.+.+ .| .+.++|+|+|..+....  
T Consensus       105 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~  184 (237)
T 3sob_L          105 DFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE  184 (237)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred             hCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceee
Confidence            9999999998765433334455666   44666766655555667999999999988 45 57999999999887421  


Q ss_pred             ------CCCceeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        171 ------PNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       171 ------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                            .........+.|.|..+..+|+|.|+|.|.|....
T Consensus       185 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          185 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence                  00011112346889999999999999999998653

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.79  E-value=5e-19  Score=164.66  Aligned_cols=164  Identities=18%  Similarity=0.265  Sum_probs=118.2

Q ss_pred             ceeEecCCcEEEEEEEe----ecCCCeeEEEECCEecCC------------CCCeEec-cCCcEEEEccCCCCCCEEEEE
Q psy11701         42 KEVALRNKKVELFCIFG----GTPLPQTIWSKDGVPINP------------SDRISQG-NYGKSLIIKHVEFSDQGSYTC  104 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~----g~p~~~v~W~~~~~~i~~------------~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C  104 (745)
                      .+.+.+|++++|.|.+.    +.|.+.+.|++++..+..            ..|..++ ..+.+|.|.+++.+|+|.|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            46789999999999995    446779999999987621            2344432 234689999999999999999


Q ss_pred             EEEeCCeeeE----EEEEEEEEEec---CeEEecCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCCCCCcee
Q psy11701        105 EVSNGVGEAK----SYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRK  176 (745)
Q Consensus       105 ~~~~~~g~~~----~~~~~l~V~~~---p~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~~~~~~  176 (745)
                      .+.+..|...    ...+.|.|..+   |.+...    ....|+.+.|.|.+. |.|.+.++|+++|..+....  ....
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~--~~~~  156 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN--TTVS  156 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSE--EEEE
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECcccc--ceEE
Confidence            9999765432    35677888765   333221    124689999999995 89999999999999887431  1122


Q ss_pred             e-cC-ceE---EEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        177 V-GP-NRI---TIENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       177 ~-~~-~~L---~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      . .. +.+   .+..+..+|.|.|+|.|.|..|.....+.
T Consensus       157 ~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          157 QDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             ECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             ecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence            2 12 222   23455678999999999999987766544

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.79  E-value=1.2e-18  Score=157.21  Aligned_cols=154  Identities=20%  Similarity=0.250  Sum_probs=117.6

Q ss_pred             ccceeEecCCcEEEEEEEe--ecCCCeeEEEE--CCEec----------CCCCCeEeccCCcEEEEccCCCCCCEEEEEE
Q psy11701         40 RKKEVALRNKKVELFCIFG--GTPLPQTIWSK--DGVPI----------NPSDRISQGNYGKSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~--g~p~~~v~W~~--~~~~i----------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (745)
                      +..+...+|++|+|.|...  +.+.+.|.|+|  ++..|          ...+|+.+..++ +|.|.+++.+|+|.|+|.
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng-sL~I~~v~~~DsG~Y~c~   84 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG-TLKIKHLKTDDQDIYKVS   84 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS-CEEECSCCGGGCEEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC-CEEECCCChhhCEEEEEE
Confidence            4567889999999999542  34566999999  88877          345677776544 899999999999999999


Q ss_pred             EEeCCeeeE-EEEEEEEEEec---CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCce
Q psy11701        106 VSNGVGEAK-SYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR  181 (745)
Q Consensus       106 ~~~~~g~~~-~~~~~l~V~~~---p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~  181 (745)
                      +.+..|... ...+.|.|..+   |.+..        .+..++|.|.+.+.|.+.+.|+++|..+. .        ....
T Consensus        85 ~~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l~-~--------~~~~  147 (182)
T 1hnf_A           85 IYDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHLK-L--------SQRV  147 (182)
T ss_dssp             EEETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEEE-E--------ESSC
T ss_pred             EEeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEECC-C--------CCcE
Confidence            999877654 35677888753   33322        34479999999988889999999998872 1        1234


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        182 ITIENLRKSDTGNYGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       182 L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l  212 (745)
                      |.+.. ..+|+|.|+|.|.|..+.......+
T Consensus       148 i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          148 ITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             EEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             EEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            44433 5789999999999999987776655

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.79  E-value=2e-18  Score=165.51  Aligned_cols=167  Identities=19%  Similarity=0.243  Sum_probs=119.5

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEec---------------CCCCCeEecc---CCcEEEEccCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPI---------------NPSDRISQGN---YGKSLIIKHVE   95 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i---------------~~~~~~~~~~---~~~~L~i~~~~   95 (745)
                      +...|..+.+.+|++++|.|. .+.|.+.+.|+|+  +..+               ....++.+..   ...+|.|.+++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            345678889999999999999 7788899999995  2111               1134555432   34589999999


Q ss_pred             CCCCEEEEEEEEeCCee----eEEEEEEEEEEecC------------eEEecCceeEeeCCCeEEEEEEEeecCCCeEEE
Q psy11701         96 FSDQGSYTCEVSNGVGE----AKSYSIDLSVLAAP------------YFTVEPEFINAAEEETVTFECKASGLPEPEIHW  159 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~----~~~~~~~l~V~~~p------------~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W  159 (745)
                      .+|+|.|+|.+.+..|.    .......|.|...+            .+...|....+.+|++++|.|.+.+.|.+.+.|
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W  161 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW  161 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence            99999999999986542    11133567776543            566678888899999999999999988899999


Q ss_pred             EeCCE-----eccC---C---CCCCceee------cCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        160 VHNGK-----PISQ---A---PPNPRRKV------GPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       160 ~~~g~-----~~~~---~---~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      +|++.     .+..   .   ....++..      ....|.|.+++.+|+|.|+|.|.|..
T Consensus       162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            99641     1100   0   00112222      13589999999999999999999974

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.79  E-value=1.4e-19  Score=171.60  Aligned_cols=173  Identities=26%  Similarity=0.369  Sum_probs=124.0

Q ss_pred             cceeEecCCcEEEEEEEeecCC-----CeeEEEECCEec-------------CCCCCeEecc-----CCcEEEEccCCCC
Q psy11701         41 KKEVALRNKKVELFCIFGGTPL-----PQTIWSKDGVPI-------------NPSDRISQGN-----YGKSLIIKHVEFS   97 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~-----~~v~W~~~~~~i-------------~~~~~~~~~~-----~~~~L~i~~~~~~   97 (745)
                      +.+.+.+|++++|.|.+.+.|.     +.+.|+|++...             ....++.+..     .+.+|.|.+++.+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            3456889999999999987754     589999976433             1134454432     2568999999999


Q ss_pred             CCEEEEEEEEeCCeeeEEEEEEEEEEec---CeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEe-CCEeccCCCCC
Q psy11701         98 DQGSYTCEVSNGVGEAKSYSIDLSVLAA---PYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVH-NGKPISQAPPN  172 (745)
Q Consensus        98 d~G~Y~C~~~~~~g~~~~~~~~l~V~~~---p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~-~g~~~~~~~~~  172 (745)
                      |+|.|+|.+.+...  .+..+.|.|..+   |.+...+ ...+.+|+.+.|.|.+ .+.|.+.+.|++ ++..+......
T Consensus        83 D~G~Y~C~~~~~~~--~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~  159 (222)
T 4i0k_A           83 DEGSYTCFVSIQDF--DSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTT  159 (222)
T ss_dssp             GCSCEEEEEEECCC--CCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEE
T ss_pred             cCEEEEEEEEeCCC--ceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcce
Confidence            99999999997532  224456666654   5555554 3467899999999999 788999999999 55554421111


Q ss_pred             CceeecCc---eEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        173 PRRKVGPN---RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       173 ~~~~~~~~---~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      .......+   .|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       160 ~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  206 (222)
T 4i0k_A          160 SQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITG  206 (222)
T ss_dssp             EEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             eEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeC
Confidence            11111222   378999999999999999999999999999998875

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.79  E-value=1e-18  Score=170.99  Aligned_cols=193  Identities=21%  Similarity=0.308  Sum_probs=124.4

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEe---ecCCCeEEEEeCCEeccCC---------------CCCCceee------cCce
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKAS---GLPEPEIHWVHNGKPISQA---------------PPNPRRKV------GPNR  181 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~---~~p~~~v~W~~~g~~~~~~---------------~~~~~~~~------~~~~  181 (745)
                      +.+...+....+.+|+++.|.|.+.   +.+.+.+.|+|++......               ....+...      .+..
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            4456667788899999999999997   6677799999965432111               01122222      2378


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCceE--EEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEE---eecCCCeEEEeeCC
Q psy11701        182 ITIENLRKSDTGNYGCNATNSLGYV--YKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV---FGAPKPEVNWIHNQ  256 (745)
Q Consensus       182 L~i~~v~~~d~G~Y~C~~~~~~g~~--~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~---~~~p~~~i~W~~~~  256 (745)
                      |.|.+++.+|+|.|+|.+.+..+..  ...+.|.|..      ..|....+.+|+.++|.|.+   .+.|.+.+.|++++
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~  159 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS  159 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec------cCCCccccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence            9999999999999999999876544  3445555542      23446778899999999999   56688899999943


Q ss_pred             EE-ccC----------------------ceEEE-----eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEE-eec
Q psy11701        257 KE-LTG----------------------GRYTI-----LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV-KEH  307 (745)
Q Consensus       257 ~~-~~~----------------------~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v-~~~  307 (745)
                      .. +..                      .+...     ...+.|.|.+++.+|+|.|+|.|.|..|.....+.|.| ..+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~  239 (268)
T 3mj6_A          160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE  239 (268)
T ss_dssp             TTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-
T ss_pred             CCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCC
Confidence            21 111                      11222     23457999999999999999999999999888999988 445


Q ss_pred             ceeecCCCcEEEecCCe
Q psy11701        308 THITDQPEDYEVEAGQS  324 (745)
Q Consensus       308 p~~~~~p~~~~~~~g~~  324 (745)
                      |.+...|....+..++.
T Consensus       240 p~~~~~p~~~~~~~~q~  256 (268)
T 3mj6_A          240 FQRTISPTPPTDKGQQG  256 (268)
T ss_dssp             -----------------
T ss_pred             CeeeeCCCCCCCCccee
Confidence            55555566555555544

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.79  E-value=2.2e-18  Score=167.13  Aligned_cols=185  Identities=18%  Similarity=0.259  Sum_probs=125.7

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEeec--CCCeeEEEECC--E---ec-------------CCCCCeEecc----CC
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDG--V---PI-------------NPSDRISQGN----YG   86 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~--~---~i-------------~~~~~~~~~~----~~   86 (745)
                      .+|...+..|....+.+|++|+|.|.+.+.  +.+.+.|+|..  .   .+             ....|+.+..    ..
T Consensus         6 ~~~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   85 (257)
T 3gkz_A            6 DDKEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQ   85 (257)
T ss_dssp             ---CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTE
T ss_pred             CCccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCce
Confidence            456777788888899999999999999884  47799999832  1   11             1124554432    22


Q ss_pred             cEEEEccCCCCCCEEEEEEEEeCC---eeeEEEEEEEEEEec--------------CeEEecCceeEeeCCCeEEEEEEE
Q psy11701         87 KSLIIKHVEFSDQGSYTCEVSNGV---GEAKSYSIDLSVLAA--------------PYFTVEPEFINAAEEETVTFECKA  149 (745)
Q Consensus        87 ~~L~i~~~~~~d~G~Y~C~~~~~~---g~~~~~~~~l~V~~~--------------p~~~~~~~~~~v~~G~~~~l~C~~  149 (745)
                      .+|.|.+++.+|+|.|+|.+.+..   .......+.|.|..+              +.+...|....+.+|++++|.|.+
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~  165 (257)
T 3gkz_A           86 VYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSA  165 (257)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEE
Confidence            379999999999999999999862   112223456777654              567777888899999999999999


Q ss_pred             eecCCC-eEEEEeC--CEeccC---------CCCCCceee----cCceEEEccCCCCCCEEEEEEEEeCCceEEEE-EEE
Q psy11701        150 SGLPEP-EIHWVHN--GKPISQ---------APPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYV  212 (745)
Q Consensus       150 ~~~p~~-~v~W~~~--g~~~~~---------~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l  212 (745)
                      .+.+.+ .+.|+|+  +..+..         .....++..    ....|.|.+++.+|+|.|+|.+.+........ ..|
T Consensus       166 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l  245 (257)
T 3gkz_A          166 SSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKL  245 (257)
T ss_dssp             SSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEE
T ss_pred             ccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEE
Confidence            987777 9999983  322210         000122211    22469999999999999999998754332222 344


Q ss_pred             EEe
Q psy11701        213 NVL  215 (745)
Q Consensus       213 ~v~  215 (745)
                      .|.
T Consensus       246 ~v~  248 (257)
T 3gkz_A          246 EIK  248 (257)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            454

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.78  E-value=7.1e-19  Score=170.00  Aligned_cols=173  Identities=16%  Similarity=0.178  Sum_probs=123.2

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecC-----CCeeEEEECC--Eec------------CCCCCeEecc--CCcEEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTP-----LPQTIWSKDG--VPI------------NPSDRISQGN--YGKSLII   91 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p-----~~~v~W~~~~--~~i------------~~~~~~~~~~--~~~~L~i   91 (745)
                      ...+...|..+.+.+|++++|.|.+.+.|     .+.+.|+|++  ..+            ....|+....  ...+|.|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            34455668889999999999999998887     5799999954  111            1124555432  2348999


Q ss_pred             ccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEee-cCCC-eEEEEeCCEec
Q psy11701         92 KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGKPI  166 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~  166 (745)
                      .+++.+|+|.|+|.+.+..+........|.|..   +|.+...+....+.+|+.++|.|.+.+ .|.+ .++|+|+|+.+
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  193 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  193 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence            999999999999999876543332334566653   566666554444557999999999988 4543 89999999987


Q ss_pred             cCC-CCC-Cce------eecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        167 SQA-PPN-PRR------KVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       167 ~~~-~~~-~~~------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      ... ... ...      ....+.|.|.++..+|+|.|+|.|.|....
T Consensus       194 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          194 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            643 000 000      111245999999999999999999997644

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.78  E-value=1e-18  Score=165.55  Aligned_cols=179  Identities=16%  Similarity=0.161  Sum_probs=120.5

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Ee---c---C-----------CCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VP---I---N-----------PSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~---i---~-----------~~~~~~~~~----~~~~L~   90 (745)
                      .+.+|....+.+|++++|.|.+.+.+  .+.+.|+|++  ..   +   .           -..|+.+..    ...+|+
T Consensus         3 ~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (227)
T 1mju_H            3 QLQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQ   82 (227)
T ss_dssp             EEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEcCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEE
Confidence            34567778899999999999998876  6789999853  21   1   0           024655432    235899


Q ss_pred             EccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEEEEeCCE
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWVHNGK  164 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W~~~g~  164 (745)
                      |.+++.+|+|.|.|.+.+..+......+.|.|..    +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|++++.
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  162 (227)
T 1mju_H           83 LSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL  162 (227)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             ECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence            9999999999999999986433222345677764    4555544333456789999999999985 766 999999987


Q ss_pred             eccCCCCCC----ceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        165 PISQAPPNP----RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       165 ~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      .+.......    ......+.|.|.++..+| |.|+|.|.|..+.......+.+.
T Consensus       163 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~  216 (227)
T 1mju_H          163 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR  216 (227)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             cCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence            653111111    111123579999999888 99999999987765555555443

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.78  E-value=3.6e-18  Score=161.83  Aligned_cols=177  Identities=22%  Similarity=0.277  Sum_probs=121.9

Q ss_pred             cCceeEeeCCCeEEEEEEEeecCC-----CeEEEEeCCEeccC---------CC---CCCceee-------cCceEEEcc
Q psy11701        131 EPEFINAAEEETVTFECKASGLPE-----PEIHWVHNGKPISQ---------AP---PNPRRKV-------GPNRITIEN  186 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p~-----~~v~W~~~g~~~~~---------~~---~~~~~~~-------~~~~L~i~~  186 (745)
                      .+....+.+|+++.|.|.+.+.|.     ..+.|+|++..+..         ..   ...+...       ++..|.|.+
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            345667899999999999877653     48999997643311         00   0122222       224899999


Q ss_pred             CCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeC-CEEccCceEE
Q psy11701        187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHN-QKELTGGRYT  265 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~-~~~~~~~~~~  265 (745)
                      ++.+|+|.|+|.+.+ .+.....+.|.|.. ++..........+..|+.++|.|.+.+.|.+.+.|+++ +..+......
T Consensus        87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~-~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~  164 (222)
T 3sbw_C           87 VKLQDAGVYRCMISY-GGADYKRITVKVNA-PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTT  164 (222)
T ss_dssp             CCGGGCEEEEEEEES-SSEEEEEEEEEEEB-CCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEE
T ss_pred             cccccCeEEEEEEEe-CCCceeEEEEEEEC-CCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccce
Confidence            999999999999999 56666778888874 33222111112566899999999999999999999998 5544432211


Q ss_pred             -E--eecCcEEEc---ccCCCCCEEEEEEEEeCCceEEEEEEEEEeecce
Q psy11701        266 -I--LETGDLKIT---DVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH  309 (745)
Q Consensus       266 -~--~~~~~l~i~---~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~  309 (745)
                       .  ..++.+.+.   .+...|.|.|+|.|.|..|.....+.|.|..+|.
T Consensus       165 ~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          165 TNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL  214 (222)
T ss_dssp             EECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred             EEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence             1  122222222   4456899999999999999999999999886653

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.78  E-value=7.1e-19  Score=165.41  Aligned_cols=173  Identities=21%  Similarity=0.332  Sum_probs=125.5

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc---C------CCCCCcee----ecCceEEEccCCCCC
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS---Q------APPNPRRK----VGPNRITIENLRKSD  191 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~---~------~~~~~~~~----~~~~~L~i~~v~~~d  191 (745)
                      .+...| ...+.+|++++|.|.+.+.+.+.+.|+|.  +....   .      .....++.    ..+..|.|.+++.+|
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   81 (213)
T 3mj8_L            3 TLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGD   81 (213)
T ss_dssp             CBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhh
Confidence            344556 78899999999999999989999999982  22111   0      00112222    134579999999999


Q ss_pred             CEEEEEEEEeCCc---eEEEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CC-CeEEEeeCCEEccCce
Q psy11701        192 TGNYGCNATNSLG---YVYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PK-PEVNWIHNQKELTGGR  263 (745)
Q Consensus       192 ~G~Y~C~~~~~~g---~~~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~  263 (745)
                      +|.|+|.+.+..+   .....+.|.|..   .+|.+...+....+.+|+.++|.|.+.+. |. +.+.|++++..+....
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  161 (213)
T 3mj8_L           82 EADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGV  161 (213)
T ss_dssp             CEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred             CEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCc
Confidence            9999999999887   334446777763   46777766666666689999999999986 33 4899999998875421


Q ss_pred             E---------EEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        264 Y---------TILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG  300 (745)
Q Consensus       264 ~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~  300 (745)
                      .         .....+.|.|.++..+|.|.|+|.|.|..+.....+
T Consensus       162 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          162 KTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             EECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             ccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            1         011124589999999999999999999987665543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.78  E-value=4.7e-19  Score=171.42  Aligned_cols=181  Identities=17%  Similarity=0.215  Sum_probs=126.3

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEec-----------------CCCCCeEeccC----CcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPI-----------------NPSDRISQGNY----GKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i-----------------~~~~~~~~~~~----~~~L~   90 (745)
                      ++..|....+.+|++|+|.|.+.|.+  .+.+.|+|.  +..+                 ....|+.+...    ..+|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   83 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH   83 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence            45677888999999999999998754  679999982  2111                 01245544321    23599


Q ss_pred             EccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEe---------------cCeEEecCceeEeeCCCeEEEEEEEeecCCC
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA---------------APYFTVEPEFINAAEEETVTFECKASGLPEP  155 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~---------------~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~  155 (745)
                      |.+++.+|+|.|+|.+.+..+........|.|..               +|.+...|....+.+|++++|.|.+.+.+.+
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~  163 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR  163 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence            9999999999999999886554443445677764               5677778888899999999999999987776


Q ss_pred             ----eEEEEeC--CEecc---------CCCCCCceee----cCceEEEccCCCCCCEEEEEEEEeCCceEEE-EEEEEEe
Q psy11701        156 ----EIHWVHN--GKPIS---------QAPPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYK-DVYVNVL  215 (745)
Q Consensus       156 ----~v~W~~~--g~~~~---------~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~-~~~l~v~  215 (745)
                          .+.|+|+  +..+.         ......++..    ....|.|.+++.+|+|.|+|.+.|..+.... ...|.|.
T Consensus       164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~  243 (253)
T 3uzq_A          164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK  243 (253)
T ss_dssp             TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEc
Confidence                9999994  22211         0001122221    1346999999999999999999986543222 2455555


Q ss_pred             e
Q psy11701        216 A  216 (745)
Q Consensus       216 ~  216 (745)
                      .
T Consensus       244 ~  244 (253)
T 3uzq_A          244 R  244 (253)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.78  E-value=9.7e-19  Score=166.43  Aligned_cols=180  Identities=18%  Similarity=0.290  Sum_probs=129.3

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .+|.+...|.. .+.+|++++|.|.+.+ +...+.|+|+|..+...............|.|.+++.+|+|.|+|.+.+..
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   83 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   83 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCC
Confidence            46778888877 7999999999999875 456899999998764211111112234689999999999999999998865


Q ss_pred             ceE--EEEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCC
Q psy11701        204 GYV--YKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAF  279 (745)
Q Consensus       204 g~~--~~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~  279 (745)
                      +..  +..+.|.|..  .+|.+...+ ...+.+|++++|.|.+.+. .+.+.|++++..+..........+.|.|.+++.
T Consensus        84 ~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~  161 (242)
T 1p6f_A           84 LWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTT  161 (242)
T ss_dssp             EECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEEEEECSSEEEEEEEECCG
T ss_pred             ccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCccccCCCceEEEEeCCCcc
Confidence            432  2345666653  256666555 3568899999999998754 458999999876543221222345799999999


Q ss_pred             CCCEEEEEEEEeCCc---eEEEEEEEEEeec
Q psy11701        280 ADSGEYTCFARNKLG---TAQGSGSLTVKEH  307 (745)
Q Consensus       280 ~d~G~Y~C~~~n~~g---~~~~~~~l~v~~~  307 (745)
                      +|+|.|+|.+.|...   ..+....|.|...
T Consensus       162 ~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          162 AHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             GGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             ccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            999999999988641   2345567777653

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.78  E-value=2.9e-18  Score=160.25  Aligned_cols=187  Identities=17%  Similarity=0.149  Sum_probs=135.0

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEE--Ec-cCceeEEEecccccCcce
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI--VN-KGESTTTEVDKFVPASKN  476 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~--~~-~~~~~~~~i~~L~~~~~Y  476 (745)
                      .||++|.++.+.. ....++.++|+++..  .+ ....|.|.|+.....  .+....  .. ......+.+.+|.+.+.|
T Consensus         2 ~pP~~P~nl~c~~-~~~~~~~c~W~p~~~--~~-~~~~Y~l~y~~~~~~--~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y   75 (210)
T 3n06_B            2 LPPGKPEIFKCRS-PNKETFTCWWRPGTD--GG-LPTNYSLTYHREGET--LMHECPDYITGGPNSCHFGKQYTSMWRTY   75 (210)
T ss_dssp             CCCCCCEEEEEEB-SSSSCEEEEEECCSS--SC-CCSEEEEEEEETTCC--CCEECSCSSTTCTTEEEECGGGCCSSSCE
T ss_pred             CCCCCCeEeEEEe-CCCCeEEEEECCCCC--CC-CCceEEEEEEECCCC--ccccCCCCCCCCCeEEEeCCCCcccceeE
Confidence            5899999999987 788999999998653  22 246899998875432  222221  10 112334445679999999


Q ss_pred             eEEEEEecCCCCCCCCcceEEeCCC-CCCCCCCceeEEEcC----CceEEEEeeCCCCCC---C-ceeeEEEEEEEcCCc
Q psy11701        477 FARVLAFNGAYNGPPSEIISFVTPE-GVPGTVQSLEAIPLG----SSAFYLKWVKPEQPN---G-VLMGYKIKYQSVKGT  547 (745)
Q Consensus       477 ~~~V~a~n~~G~g~~S~~~~~~t~~-~~P~~p~~~~~~~~~----~~~i~l~W~~p~~~~---g-~i~~Y~v~~~~~~~~  547 (745)
                      .|+|.|.|..|.+. +..+.+.+.. ..|++|.++.+....    .+++.|+|++|...+   | .+.+|.|+|+..+..
T Consensus        76 ~~~V~A~N~~G~~~-s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~~  154 (210)
T 3n06_B           76 IMMVNATNQMGSSF-SDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAA  154 (210)
T ss_dssp             EEEEEEEETTEEEE-CCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTCS
T ss_pred             EEEEEEEcCCCCee-CCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCCC
Confidence            99999999999884 4445555443 468889889887653    589999999987532   4 579999999987654


Q ss_pred             ccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCC-CCCcceeeec
Q psy11701        548 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGD-GAESKYLFYV  600 (745)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~-g~~S~~~~~~  600 (745)
                      .|...      . ......+.|.+|.|++.|.|+|+|.+..|. |.+|..+.+.
T Consensus       155 ~~~~~------~-~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~~  201 (210)
T 3n06_B          155 EWEIH------F-AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQ  201 (210)
T ss_dssp             SCEEE------E-EETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEEE
T ss_pred             CCEEE------e-ccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeEE
Confidence            33211      1 234578999999999999999999998776 7777655443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.78  E-value=1.3e-18  Score=165.23  Aligned_cols=178  Identities=17%  Similarity=0.214  Sum_probs=128.2

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCC---eeEEEECCEecC----------------CCCCeEe---------ccCCcEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLP---QTIWSKDGVPIN----------------PSDRISQ---------GNYGKSL   89 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~---~v~W~~~~~~i~----------------~~~~~~~---------~~~~~~L   89 (745)
                      ..|.++.+..|++|+|.|.+.+.+.+   .|+|+|++..+.                ...+..+         ...+.+|
T Consensus         6 ~vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL   85 (225)
T 4fmk_A            6 RVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATL   85 (225)
T ss_dssp             ECCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCE
T ss_pred             EeCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEE
Confidence            34566789999999999999887766   489999764331                0112221         1223579


Q ss_pred             EEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccC
Q psy11701         90 IIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQ  168 (745)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~  168 (745)
                      .|.+++.+|+|.|+|.+.+..+........+.+..+|.+...+.......++.+.+.|.+. +.|++.+.|++++..+..
T Consensus        86 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~  165 (225)
T 4fmk_A           86 AFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAK  165 (225)
T ss_dssp             EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEE
T ss_pred             EEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccC
Confidence            9999999999999999998777666666778888888777777777778888888888774 578889999998765431


Q ss_pred             CCC----CCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEE--EEEEEEe
Q psy11701        169 APP----NPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK--DVYVNVL  215 (745)
Q Consensus       169 ~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~--~~~l~v~  215 (745)
                      ...    ........+.|.|.++..+|+|.|+|.|.|..+....  .+.|.|.
T Consensus       166 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~  218 (225)
T 4fmk_A          166 DTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVR  218 (225)
T ss_dssp             EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBT
T ss_pred             CcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEE
Confidence            110    0011111246999999999999999999998776543  4444443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.78  E-value=4.2e-18  Score=160.85  Aligned_cols=175  Identities=14%  Similarity=0.207  Sum_probs=127.1

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecCCC---eEEEEeCCEeccCC---------------CCCCce-------eecCceEEE
Q psy11701        130 VEPEFINAAEEETVTFECKASGLPEP---EIHWVHNGKPISQA---------------PPNPRR-------KVGPNRITI  184 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p~~---~v~W~~~g~~~~~~---------------~~~~~~-------~~~~~~L~i  184 (745)
                      ..|....+.+|++++|.|.+.+.|.+   .|+|+|++..+...               ....+.       ...+.+|.|
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            34677889999999999999987765   48999987544210               001111       112357999


Q ss_pred             ccCCCCCCEEEEEEEEeCCceEEEE-EEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCce
Q psy11701        185 ENLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGR  263 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g~~~~~-~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~  263 (745)
                      .+++.+|+|.|.|.+.+..+..... ..+.+...++.....+....+..|+.+.+.|.+.+.|.+.|.|++++..+....
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~  163 (218)
T 4frw_A           84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR  163 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE
T ss_pred             eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCc
Confidence            9999999999999998866654443 444444444444555566677789999999999999999999999987664332


Q ss_pred             EEEe-----ecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        264 YTIL-----ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV  304 (745)
Q Consensus       264 ~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v  304 (745)
                      ....     ..+.|.|.++..+|.|.|+|.|.|..|.....+.+.|
T Consensus       164 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          164 SFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             EEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             eEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            2221     1236999999999999999999999987655555544

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.77  E-value=2.5e-18  Score=168.93  Aligned_cols=181  Identities=18%  Similarity=0.277  Sum_probs=127.7

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--EecC-----------------CCCCeEecc----CCcE
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VPIN-----------------PSDRISQGN----YGKS   88 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~i~-----------------~~~~~~~~~----~~~~   88 (745)
                      ..++..|....+.+|++|+|.|.+.|.+  .+.+.|+|++  ..+.                 ...|+.+..    ...+
T Consensus        27 ~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s  106 (282)
T 1qok_A           27 QVKLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAY  106 (282)
T ss_dssp             CCEEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEE
T ss_pred             eEEEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEE
Confidence            3456778899999999999999998875  5799999953  1110                 124555432    2358


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCe---e-eEEEEEEEEEEec---------------CeEEecCceeEeeCCCeEEEEEEE
Q psy11701         89 LIIKHVEFSDQGSYTCEVSNGVG---E-AKSYSIDLSVLAA---------------PYFTVEPEFINAAEEETVTFECKA  149 (745)
Q Consensus        89 L~i~~~~~~d~G~Y~C~~~~~~g---~-~~~~~~~l~V~~~---------------p~~~~~~~~~~v~~G~~~~l~C~~  149 (745)
                      |.|.+++.+|+|.|+|.+.+..|   . .....+.|.|..+               +.+...|....+.+|++++|.|.+
T Consensus       107 L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~  186 (282)
T 1qok_A          107 LQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSA  186 (282)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEE
T ss_pred             EEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEe
Confidence            99999999999999999998765   1 1223356777654               345666778889999999999999


Q ss_pred             eecCCCeEEEEe--CCEeccC---------CCCCCceee----cCceEEEccCCCCCCEEEEEEEEeCCceEE-EEEEEE
Q psy11701        150 SGLPEPEIHWVH--NGKPISQ---------APPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVY-KDVYVN  213 (745)
Q Consensus       150 ~~~p~~~v~W~~--~g~~~~~---------~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~-~~~~l~  213 (745)
                      .+.+ +.+.|+|  +|..+..         .....++..    ....|.|.++..+|+|.|+|.+.+..+... ....|.
T Consensus       187 ~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~  265 (282)
T 1qok_A          187 SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLE  265 (282)
T ss_dssp             SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEE
T ss_pred             cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEE
Confidence            9888 8999999  5654310         001122221    235799999999999999999987543222 224555


Q ss_pred             Ee
Q psy11701        214 VL  215 (745)
Q Consensus       214 v~  215 (745)
                      |.
T Consensus       266 V~  267 (282)
T 1qok_A          266 LK  267 (282)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.77  E-value=8.9e-18  Score=162.55  Aligned_cols=172  Identities=17%  Similarity=0.213  Sum_probs=122.3

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--Eec-------------CCCCCeEec----cCCcEEEEccCC
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VPI-------------NPSDRISQG----NYGKSLIIKHVE   95 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~i-------------~~~~~~~~~----~~~~~L~i~~~~   95 (745)
                      .+...|..+.+.+|++++|.|.+.+.|.+.+.|+|..  ..+             ....++...    ....+|.|.+++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            3455677888999999999999998999999999832  111             112344431    223479999999


Q ss_pred             CCCCEEEEEEEEeCCee---eEEEEEEEEEEe--------------------cCeEEecCceeEeeCCCeEEEEEEEeec
Q psy11701         96 FSDQGSYTCEVSNGVGE---AKSYSIDLSVLA--------------------APYFTVEPEFINAAEEETVTFECKASGL  152 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~---~~~~~~~l~V~~--------------------~p~~~~~~~~~~v~~G~~~~l~C~~~~~  152 (745)
                      .+|+|.|+|.+.+..+.   .....+.|.|..                    +|.+...|....+.+|++++|.|.+.+.
T Consensus        85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  164 (256)
T 3tf7_C           85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS  164 (256)
T ss_dssp             GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC
T ss_pred             cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC
Confidence            99999999999986431   122335666664                    6677888888889999999999999875


Q ss_pred             CCCeEEEEeCC--Eec---cC---------CCCCCcee-----ecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        153 PEPEIHWVHNG--KPI---SQ---------APPNPRRK-----VGPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       153 p~~~v~W~~~g--~~~---~~---------~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                       .+.+.|+|..  ..+   ..         .....++.     .....|.|.+++.+|+|.|+|.|.|..|...
T Consensus       165 -~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~  237 (256)
T 3tf7_C          165 -HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLY  237 (256)
T ss_dssp             -CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEE
T ss_pred             -ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccE
Confidence             6799999832  111   00         00011111     1234899999999999999999999877543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.77  E-value=1.8e-18  Score=167.54  Aligned_cols=181  Identities=18%  Similarity=0.214  Sum_probs=125.4

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEe---c--------------CCCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVP---I--------------NPSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~---i--------------~~~~~~~~~~----~~~~L~   90 (745)
                      .+..+....+.+|++|+|.|.+.+.+  .+.+.|+|.  +..   +              ....|+.+..    ...+|.
T Consensus         5 ~v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   84 (256)
T 3umt_A            5 QLQQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLE   84 (256)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             eEEccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEE
Confidence            44556667899999999999998865  679999983  211   1              0124454432    223699


Q ss_pred             EccCCCCCCEEEEEEEEeCC---eeeEEEEEEEEEEe----------------cCeEEecCceeEeeCCCeEEEEEEEee
Q psy11701         91 IKHVEFSDQGSYTCEVSNGV---GEAKSYSIDLSVLA----------------APYFTVEPEFINAAEEETVTFECKASG  151 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~---g~~~~~~~~l~V~~----------------~p~~~~~~~~~~v~~G~~~~l~C~~~~  151 (745)
                      |.+++.+|+|.|.|.+.+..   .......+.|.|..                +|.+...|....+.+|++++|.|.+.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  164 (256)
T 3umt_A           85 LRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQ  164 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred             ECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEec
Confidence            99999999999999998761   11222345677764                667778888889999999999999999


Q ss_pred             cCCCeEEEEeC--CEecc---------CCCCCCceee----cCceEEEccCCCCCCEEEEEEEEeCCceEEE-EEEEEEe
Q psy11701        152 LPEPEIHWVHN--GKPIS---------QAPPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLGYVYK-DVYVNVL  215 (745)
Q Consensus       152 ~p~~~v~W~~~--g~~~~---------~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~-~~~l~v~  215 (745)
                      .+.+.+.|+|+  +..+.         ......++..    ....|.|.+++.+|+|.|+|.+.+....... ...|.|.
T Consensus       165 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~  244 (256)
T 3umt_A          165 DIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK  244 (256)
T ss_dssp             CCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence            88889999994  22111         0001122221    2246999999999999999999986543322 2566665


Q ss_pred             e
Q psy11701        216 A  216 (745)
Q Consensus       216 ~  216 (745)
                      .
T Consensus       245 ~  245 (256)
T 3umt_A          245 R  245 (256)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.77  E-value=1.8e-18  Score=156.27  Aligned_cols=158  Identities=14%  Similarity=0.207  Sum_probs=116.0

Q ss_pred             eeEeeCCCeEEEEEEEee--cCCCeEEEEeCCEeccCC-------CCCCceee-cCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        134 FINAAEEETVTFECKASG--LPEPEIHWVHNGKPISQA-------PPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~g~~~~~~-------~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ...+.+|++++|.|...+  .+.+.|.|+|++..+...       ....+... .++.|.|.+++.+|+|.|+|.+.|..
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~   84 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   84 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCC
Confidence            345789999999995432  456699999999755310       01223333 45679999999999999999999998


Q ss_pred             ceE--EEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCC
Q psy11701        204 GYV--YKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFAD  281 (745)
Q Consensus       204 g~~--~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  281 (745)
                      |..  ...+.|.|...+.      .......+..++|.|.+.+.|.+.+.|++++..+..       ...+.|..+..+|
T Consensus        85 g~~~~~~~~~l~V~~~~~------~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~-------~~~~~i~~~~~~d  151 (176)
T 1hng_A           85 GTRILNKALDLRILEMVS------KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRS-------LRQKTMSYQWTNL  151 (176)
T ss_dssp             CCEEEEEEEEEEEECCCC------CCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEE-------ESSSEEEEECSCC
T ss_pred             CCEEEEEEEEEEEeCCCC------CCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCC-------CCcEEEEEEEccC
Confidence            886  5557777764211      011122355699999999999999999999987643       2235666788999


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEE
Q psy11701        282 SGEYTCFARNKLGTAQGSGSLTV  304 (745)
Q Consensus       282 ~G~Y~C~~~n~~g~~~~~~~l~v  304 (745)
                      .|.|+|.|.|..|.......|.+
T Consensus       152 ~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          152 RAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             SSCEEEEEEETTEEEEEEECCCC
T ss_pred             CeEEEEEEEecCCCceecccccC
Confidence            99999999999998877765543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.77  E-value=1.9e-18  Score=154.90  Aligned_cols=150  Identities=17%  Similarity=0.220  Sum_probs=112.9

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC------------CCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP------------SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      +.+.+.+|++|+|.|.+. .|.+.|.|+|++..|..            .+|+.+...+++|+|.+++.+|+|.|+|.+.+
T Consensus         3 ~~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n   81 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (171)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence            456789999999999985 47889999998865421            23566655667899999999999999999987


Q ss_pred             CCeeeEEEEEEEEEEecC---eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEc
Q psy11701        109 GVGEAKSYSIDLSVLAAP---YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE  185 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~~p---~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~  185 (745)
                      ..|   +..+.|.|..++   .+.....        ...|.|.+.+.|.+.++|+++|..+...        ....|.+.
T Consensus        82 ~~~---~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~~~~l~~~--------~~~~l~~~  142 (171)
T 1ccz_A           82 ITD---TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQGKEHLRSL--------RQKTMSYQ  142 (171)
T ss_dssp             CCS---CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEETTEEEEEE--------SSSEEEEE
T ss_pred             CCC---cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEECCEECcCC--------cceEEEEe
Confidence            766   366888887653   2222211        1379999998899999999999988622        12244444


Q ss_pred             cCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        186 NLRKSDTGNYGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g~~~~~~~l  212 (745)
                        ..+|+|.|+|.|.|..+.....+.|
T Consensus       143 --~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          143 --WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             --CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             --ccCCCceEEEEEEcccCcccceeEE
Confidence              3788999999999999887665544

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.77  E-value=4.3e-19  Score=165.50  Aligned_cols=172  Identities=16%  Similarity=0.232  Sum_probs=120.1

Q ss_pred             CCeeEeecccee-EecCCcEEEEEEEeecC---C-CeeEEEECCEecCCCC---CeEecc----CCcEEEEccCCCCCCE
Q psy11701         33 PKQQYVTRKKEV-ALRNKKVELFCIFGGTP---L-PQTIWSKDGVPINPSD---RISQGN----YGKSLIIKHVEFSDQG  100 (745)
Q Consensus        33 p~~~~~~~~~~~-v~~G~~~~l~C~~~g~p---~-~~v~W~~~~~~i~~~~---~~~~~~----~~~~L~i~~~~~~d~G  100 (745)
                      |..++..|.... +.+|++++|.|.+.|.+   . ..|.|+|++..+....   ...+..    ....|.|.+++.+|+|
T Consensus         2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G   81 (207)
T 2vol_A            2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTC
T ss_pred             CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCC
Confidence            556666666655 89999999999998884   2 4899999998775321   001111    1247999999999999


Q ss_pred             EEEEEEEeCCeee-EEEEEEE--EEEecCeEEecCceeEeeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCce
Q psy11701        101 SYTCEVSNGVGEA-KSYSIDL--SVLAAPYFTVEPEFINAAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRR  175 (745)
Q Consensus       101 ~Y~C~~~~~~g~~-~~~~~~l--~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~  175 (745)
                      .|+|.|.+..+.. ....+.+  .+..+|.+...+......+|+.+.|.|.+.| .|. +.++|+|||..+.........
T Consensus        82 ~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  161 (207)
T 2vol_A           82 EFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPI  161 (207)
T ss_dssp             CEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCE
T ss_pred             EEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCce
Confidence            9999999887643 2234444  5566888766655433456999999999998 455 499999999987532211111


Q ss_pred             eecCc------eEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        176 KVGPN------RITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       176 ~~~~~------~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      ...++      .|.|.....+|.|.|+|.|.|...
T Consensus       162 ~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          162 MDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             ECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             ECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            22233      355666666789999999999754

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.77  E-value=1e-18  Score=159.65  Aligned_cols=145  Identities=16%  Similarity=0.320  Sum_probs=110.2

Q ss_pred             EeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEcc-CCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        136 NAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN-LRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       136 ~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      ...+|+++.|.|.+.+ +. .++|+|+|..+...        .+..|.|.+ ++.+|+|.|+|.|.|..|.....+.+.|
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~--------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v   79 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK--------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARV   79 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC--------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC--------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEE
Confidence            3468999999999987 43 59999999998743        245899999 9999999999999999887555555444


Q ss_pred             eecCCee-----------------e--eCC--Cc---eEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecC
Q psy11701        215 LAHAPEI-----------------T--EAP--KD---EYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG  270 (745)
Q Consensus       215 ~~~~p~~-----------------~--~~~--~~---~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~  270 (745)
                      ....+..                 .  ..+  ..   ..+.+|+.+.|.|.+   |.+.+.|++++..+.....   ..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~---~~~  153 (186)
T 1jbj_A           80 GSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA---TKN  153 (186)
T ss_dssp             CSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC---CSS
T ss_pred             ecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC---Ccc
Confidence            3211110                 0  000  01   123489999999998   7789999999998864321   456


Q ss_pred             cEEEcccCCCCCEEEEEEEEeCCceE
Q psy11701        271 DLKITDVAFADSGEYTCFARNKLGTA  296 (745)
Q Consensus       271 ~l~i~~~~~~d~G~Y~C~~~n~~g~~  296 (745)
                      .|.|.++..+|+|.|+|.|.|..|..
T Consensus       154 ~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          154 TWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             eEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            89999999999999999999987765

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.77  E-value=2.6e-18  Score=162.28  Aligned_cols=174  Identities=16%  Similarity=0.196  Sum_probs=122.4

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Ee---c---CC-------------CCCeEecc----CCcE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VP---I---NP-------------SDRISQGN----YGKS   88 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~---i---~~-------------~~~~~~~~----~~~~   88 (745)
                      .+..|....+.+|++++|.|.+.+.+  .+.+.|+|++  ..   +   ..             ..|+.+..    ...+
T Consensus         3 ~v~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   82 (220)
T 1pz5_B            3 KVEESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVY   82 (220)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEE
T ss_pred             eEeccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEE
Confidence            34567778899999999999998766  6799999853  21   1   00             24655432    2238


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCeee--EEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEEEE
Q psy11701         89 LIIKHVEFSDQGSYTCEVSNGVGEA--KSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWV  160 (745)
Q Consensus        89 L~i~~~~~~d~G~Y~C~~~~~~g~~--~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W~  160 (745)
                      |.|.+++.+|+|.|+|.+.+..+..  ....+.|.|.    .+|.+...+....+.+|+.++|.|.+.|. |.+ .++|+
T Consensus        83 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  162 (220)
T 1pz5_B           83 LQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWN  162 (220)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEG
T ss_pred             EEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEe
Confidence            9999999999999999999865322  1133566665    35666555544456789999999999986 888 99999


Q ss_pred             eCCEeccCCCCCC----ceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        161 HNGKPISQAPPNP----RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV  210 (745)
Q Consensus       161 ~~g~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~  210 (745)
                      +++..........    ......+.|.|.++..+| |.|+|.|.|..|.....+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  215 (220)
T 1pz5_B          163 YGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK  215 (220)
T ss_dssp             GGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence            9886421000000    111224578999998866 999999999998765544

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.77  E-value=3.3e-18  Score=162.41  Aligned_cols=172  Identities=21%  Similarity=0.283  Sum_probs=116.9

Q ss_pred             ceeEeeCCCeEEEEEEEeecCCC---eEEEEeCCEe-----------ccCC---CCCCcee-------ecCceEEEccCC
Q psy11701        133 EFINAAEEETVTFECKASGLPEP---EIHWVHNGKP-----------ISQA---PPNPRRK-------VGPNRITIENLR  188 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~~p~~---~v~W~~~g~~-----------~~~~---~~~~~~~-------~~~~~L~i~~v~  188 (745)
                      ..+.+.+|++++|.|.+.+.+.+   .|+|+|++..           +...   ....+..       .++..|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            34678999999999999875544   7999987632           1111   1111111       124579999999


Q ss_pred             CCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeec-CCCeEEEeeCCEE-ccCceE--
Q psy11701        189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKE-LTGGRY--  264 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~~i~W~~~~~~-~~~~~~--  264 (745)
                      .+|+|.|+|.|.|..|.....+.+.+..   .+...+....+.+|+.+.|.|.+.+. |.+.|.|++++.. +.....  
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~---~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~  168 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAA---LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV  168 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEB---CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCC
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeecc---ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEE
Confidence            9999999999999888776665555432   22233334567889999999999884 8899999996544 332221  


Q ss_pred             EEeecCc---EEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeec
Q psy11701        265 TILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH  307 (745)
Q Consensus       265 ~~~~~~~---l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~  307 (745)
                      ....++.   +.+..++.+|+|.|+|.|.|..|.....+.|.|.++
T Consensus       169 ~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          169 VADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             EECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             EECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            2222332   334466789999999999999999988888888653

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.77  E-value=7.6e-19  Score=164.62  Aligned_cols=170  Identities=17%  Similarity=0.203  Sum_probs=119.3

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEecC----------------CCCCeEecc----CCcEEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPIN----------------PSDRISQGN----YGKSLII   91 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i~----------------~~~~~~~~~----~~~~L~i   91 (745)
                      .+..|....+.+|++++|.|.+.+.|  .+.+.|+|+  +..+.                ...|+.+..    ...+|.|
T Consensus         3 ~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   82 (210)
T 3d9a_H            3 QLQESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDL   82 (210)
T ss_dssp             EEEEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             eEecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEE
Confidence            34557778899999999999998875  479999985  22210                134555432    1248999


Q ss_pred             ccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEEEEeCCEe
Q psy11701         92 KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWVHNGKP  165 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W~~~g~~  165 (745)
                      .+++.+|+|.|+|.+.+..  .......|.|.    .+|.+...+....+.+|+.++|.|.+.|. |.+ .+.|++++..
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  160 (210)
T 3d9a_H           83 NSVTTEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  160 (210)
T ss_dssp             CSCCGGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CCCCcccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcc
Confidence            9999999999999998753  11122456665    35666555444457799999999999986 887 9999999876


Q ss_pred             ccCCCCCCc----eeecCceEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy11701        166 ISQAPPNPR----RKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK  208 (745)
Q Consensus       166 ~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~  208 (745)
                      +........    .....+.|.|.++..+| |.|+|.|.|..|....
T Consensus       161 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          161 SGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             cceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            431111111    11123468999998877 9999999999886543

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.77  E-value=4.9e-18  Score=153.67  Aligned_cols=153  Identities=16%  Similarity=0.242  Sum_probs=112.8

Q ss_pred             cceeEecCCcEEEEEEEee-cCCCeeEEEEC-CEecC------------CC--CCeEeccCCcEEEEccCCCCCCEEEEE
Q psy11701         41 KKEVALRNKKVELFCIFGG-TPLPQTIWSKD-GVPIN------------PS--DRISQGNYGKSLIIKHVEFSDQGSYTC  104 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g-~p~~~v~W~~~-~~~i~------------~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (745)
                      ..+.+.+|++|+|.|.+.+ .+.+.|.|+|+ +..|.            ..  +|+.++..+++|+|.+++.+|+|.|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            4567999999999999854 34679999994 32221            11  567775566789999999999999999


Q ss_pred             EEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCceeecCceEE
Q psy11701        105 EVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT  183 (745)
Q Consensus       105 ~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~  183 (745)
                      .+.+..  .....+.|.|..++.   .| . ....++.++|.|.+ .+ |.+.+.|++++..+.        ...+.+|.
T Consensus        87 ~v~~~~--~~~~~~~L~V~~~~~---~P-~-i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~--------~~~~~~l~  150 (180)
T 2dru_A           87 RMLHET--EDQWKITMEVYEMVS---KP-M-IYWECSNATLTCEVLEG-TDVELKLYQGKEHLR--------SLRQKTMS  150 (180)
T ss_dssp             EEESSS--EEEEEEEEEEECCCC---CC-E-EEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE--------EESSSEEE
T ss_pred             EEEcCC--eEEEEEEEEEECCCC---CC-E-EEecCCCEEEEEEeCCC-CCCEEEEEECCeECc--------CCCCCEEE
Confidence            998765  444668888876431   11 1 11245679999999 66 889999999999875        12345666


Q ss_pred             EccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        184 IENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       184 i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      +..  .+|+|.|+|.|.|..+.......
T Consensus       151 ~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          151 YQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             EEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             EEE--hhcCccEEEEEecCcCcccccee
Confidence            633  78999999999999987765543

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.77  E-value=4.7e-18  Score=164.68  Aligned_cols=174  Identities=17%  Similarity=0.245  Sum_probs=123.8

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEeec--CCCeeEEEECC--Eec-----------------CCCCCeEec--c--C
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDG--VPI-----------------NPSDRISQG--N--Y   85 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~--~~i-----------------~~~~~~~~~--~--~   85 (745)
                      .+|..+...+..+.+.+|++|+|.|.+.+.  +.+.+.|+|..  ..+                 ....|+.+.  .  .
T Consensus         4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   83 (256)
T 3juy_B            4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN   83 (256)
T ss_dssp             ---CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred             ccceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence            456778889999999999999999999873  67799999732  111                 012455544  2  2


Q ss_pred             CcEEEEccCCCCCCEEEEEEEEeC-----------CeeeEEEEEEEEEEe---------------cCeEEecCceeEeeC
Q psy11701         86 GKSLIIKHVEFSDQGSYTCEVSNG-----------VGEAKSYSIDLSVLA---------------APYFTVEPEFINAAE  139 (745)
Q Consensus        86 ~~~L~i~~~~~~d~G~Y~C~~~~~-----------~g~~~~~~~~l~V~~---------------~p~~~~~~~~~~v~~  139 (745)
                      ..+|+|.+++.+|+|.|.|.+.+.           ..........|.|..               +|.+...|....+.+
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSP  163 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECT
T ss_pred             EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeC
Confidence            237999999999999999999875           122222445677766               456777788899999


Q ss_pred             CCeEEEEEEEeecCC-CeEEEEeC--CEeccC---------CCCCCceee----cCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        140 EETVTFECKASGLPE-PEIHWVHN--GKPISQ---------APPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       140 G~~~~l~C~~~~~p~-~~v~W~~~--g~~~~~---------~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      |++++|.|.+.+.+. +.+.|+|.  +..+..         .....++..    ....|.|.+++.+|+|.|+|.|.|..
T Consensus       164 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          164 GERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             TSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             CCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            999999999988776 89999983  222110         001122221    23469999999999999999998854


Q ss_pred             c
Q psy11701        204 G  204 (745)
Q Consensus       204 g  204 (745)
                      .
T Consensus       244 ~  244 (256)
T 3juy_B          244 S  244 (256)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.77  E-value=1.2e-18  Score=164.73  Aligned_cols=164  Identities=16%  Similarity=0.138  Sum_probs=106.0

Q ss_pred             CcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCc
Q psy11701        430 SLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQS  509 (745)
Q Consensus       430 ~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~  509 (745)
                      ..++.|++|.|++....   ........ ......+++.+|.|++.|.|+|+|.|..|.|++|....+.+....|..|..
T Consensus        17 ~~~~~Vt~Y~~~~~~~~---~~~~~~~~-~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~   92 (232)
T 4go6_B           17 GTNVMVTHYFLPPDDAV---PSDDDLGT-VPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPC   92 (232)
T ss_dssp             SSEEEECEEECCCC----------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCE
T ss_pred             CCCEEEEEEEEEeeCCC---CCcEEEEE-CCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCe
Confidence            34566888888553322   12222222 445678999999999999999999999999999998888776554444445


Q ss_pred             eeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccc--------cccccC-------CCcceeeecCCCC
Q psy11701        510 LEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLER--------LPYISD-------PTTTSAKLAGLEP  574 (745)
Q Consensus       510 ~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~--------~~~~~~-------~~~~~~~l~~L~p  574 (745)
                      +.....+.++|.|+|.+|.+.||+|++|.|+|+..+..........        ......       .....+.+.+|.+
T Consensus        93 ~~~~~~~~~sv~l~W~~P~~~~G~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  172 (232)
T 4go6_B           93 AIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTT  172 (232)
T ss_dssp             EEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEESS
T ss_pred             eeEEecCCCEEEEEEeCCCCCCCceeeEEEEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecCcc
Confidence            5556668899999999999889999999999987655432221100        000000       1112344568999


Q ss_pred             CccEEEEEEEEecCCCCCCccee
Q psy11701        575 STKYRIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       575 ~t~Y~~~V~a~n~~G~g~~S~~~  597 (745)
                      ++.|.|||.|+|.+|.|++|+..
T Consensus       173 ~t~Y~frV~A~N~~G~Gp~S~v~  195 (232)
T 4go6_B          173 KPAIIFRIAARNEKGYGPATQVR  195 (232)
T ss_dssp             SEEEEEEEEEECSSCBCCCEEEE
T ss_pred             CCceEEEEEEECCCcCCCCcccE
Confidence            99999999999999999998754

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.77  E-value=8.4e-19  Score=165.96  Aligned_cols=175  Identities=15%  Similarity=0.157  Sum_probs=122.0

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Ee---c----------------CCCCCeEecc----CCcE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VP---I----------------NPSDRISQGN----YGKS   88 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~---i----------------~~~~~~~~~~----~~~~   88 (745)
                      .+.+|....+.+|++++|.|.+.+.+  .+.+.|+|++  ..   +                ....|+.+..    ...+
T Consensus         3 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   82 (222)
T 1q9r_B            3 KLVESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILY   82 (222)
T ss_dssp             EEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEE
T ss_pred             eEecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEE
Confidence            34566777899999999999998765  6789999842  21   1                0124555532    2348


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCee----eEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEE
Q psy11701         89 LIIKHVEFSDQGSYTCEVSNGVGE----AKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PEP-EIH  158 (745)
Q Consensus        89 L~i~~~~~~d~G~Y~C~~~~~~g~----~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~  158 (745)
                      |+|.+++.+|+|.|.|.+.+..+.    .....+.|.|..    +|.+...+....+.+|+.++|.|.+.|. |.+ .+.
T Consensus        83 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  162 (222)
T 1q9r_B           83 LQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  162 (222)
T ss_dssp             EEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEE
Confidence            999999999999999999876431    111234566653    4666554444446789999999999985 888 999


Q ss_pred             EEeCCEeccCCCCC----CceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        159 WVHNGKPISQAPPN----PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       159 W~~~g~~~~~~~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      |+++|..+......    .......+.|.|.++..+| |.|+|.|.|..|.......
T Consensus       163 W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~  218 (222)
T 1q9r_B          163 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK  218 (222)
T ss_dssp             EGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEe
Confidence            99998765421000    0011123478999999999 9999999999887554433

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.77  E-value=4.3e-18  Score=164.49  Aligned_cols=167  Identities=17%  Similarity=0.202  Sum_probs=117.8

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCE-----e---------cCCCCCeEecc--CCcEEEEccCCCCC
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGV-----P---------INPSDRISQGN--YGKSLIIKHVEFSD   98 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~-----~---------i~~~~~~~~~~--~~~~L~i~~~~~~d   98 (745)
                      .+...|..+.+.+|++++|.|.+.+.|.+.+.|+|+..     .         .....++....  ...+|.|.+++.+|
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQED   85 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhh
Confidence            34556778889999999999999999999999998431     1         11134554332  22379999999999


Q ss_pred             CEEEEEEEEeCCeeeEEEEEEEEEEec-------------------CeEEecCceeEeeCCCeEEEEEEEeecC--CCeE
Q psy11701         99 QGSYTCEVSNGVGEAKSYSIDLSVLAA-------------------PYFTVEPEFINAAEEETVTFECKASGLP--EPEI  157 (745)
Q Consensus        99 ~G~Y~C~~~~~~g~~~~~~~~l~V~~~-------------------p~~~~~~~~~~v~~G~~~~l~C~~~~~p--~~~v  157 (745)
                      +|.|+|.+.+..+........|.|..+                   +.+...+....+.+|++++|.|.+.+.+  .+.+
T Consensus        86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  165 (250)
T 3esu_F           86 IGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWM  165 (250)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEE
T ss_pred             CEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEE
Confidence            999999998865544434456666543                   3344556677899999999999998866  6799


Q ss_pred             EEEeC--CEeccCC--------------CCCCceeec------CceEEEccCCCCCCEEEEEEEEe
Q psy11701        158 HWVHN--GKPISQA--------------PPNPRRKVG------PNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       158 ~W~~~--g~~~~~~--------------~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      .|+|+  +..+...              ....++...      ...|.|.+++.+|+|.|+|.+.+
T Consensus       166 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          166 NWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            99997  4332100              001222221      23699999999999999999997

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.77  E-value=2.9e-19  Score=168.16  Aligned_cols=175  Identities=14%  Similarity=0.259  Sum_probs=118.1

Q ss_pred             CCCCCeeEeecccee-EecCCcEEEEEEEeec---CC-CeeEEEECCEecCCCCCeE--ecc-----CCcEEEEccCCCC
Q psy11701         30 RHAPKQQYVTRKKEV-ALRNKKVELFCIFGGT---PL-PQTIWSKDGVPINPSDRIS--QGN-----YGKSLIIKHVEFS   97 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~-v~~G~~~~l~C~~~g~---p~-~~v~W~~~~~~i~~~~~~~--~~~-----~~~~L~i~~~~~~   97 (745)
                      ..+|..++.+|.... +.+|++++|.|.+.|.   |. +.|.|+|++..+.......  ...     ..+.|.|.+++.+
T Consensus         7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   86 (218)
T 2rgs_A            7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM   86 (218)
T ss_dssp             --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred             CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence            445666655444443 8999999999999887   33 6999999998876332110  001     1247999999999


Q ss_pred             CCEEEEEEEEeCCeee-EEEEEEE--EEEecCeEEecCceeEeeCCCeEEEEEEEee-cCCC-eEEEEeCCEeccCCCCC
Q psy11701         98 DQGSYTCEVSNGVGEA-KSYSIDL--SVLAAPYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGKPISQAPPN  172 (745)
Q Consensus        98 d~G~Y~C~~~~~~g~~-~~~~~~l--~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~~~  172 (745)
                      |+|.|+|.|.+..+.. ....+.+  .+..+|.+...+......+|+.++|.|.+.| .|.+ .++|+|+|..+......
T Consensus        87 D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  166 (218)
T 2rgs_A           87 SGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDT  166 (218)
T ss_dssp             TTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEEC
T ss_pred             CCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceec
Confidence            9999999999976643 2233322  4556787766554433346999999999998 5765 99999999987532111


Q ss_pred             CceeecCc------eEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        173 PRRKVGPN------RITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       173 ~~~~~~~~------~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      ......++      .|.|.....+|.|.|+|.|.|...
T Consensus       167 ~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          167 APVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL  204 (218)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred             ccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence            11112333      344555555569999999999764

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.77  E-value=4e-18  Score=166.97  Aligned_cols=170  Identities=18%  Similarity=0.224  Sum_probs=120.1

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCE-----ec---------CCCCCeEecc--CCcEEEEccCCC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGV-----PI---------NPSDRISQGN--YGKSLIIKHVEF   96 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~-----~i---------~~~~~~~~~~--~~~~L~i~~~~~   96 (745)
                      ...+...|..+.+.+|++++|.|.+.+.|.+.+.|+|++.     .+         ....|+....  ...+|.|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            3445667888999999999999999988888999998541     11         1134555432  234899999999


Q ss_pred             CCCEEEEEEEEeCCeeeEEEEEEEEEEecC--------------eEEecCceeEeeCCCeEEEEEEEeecC--CCeEEEE
Q psy11701         97 SDQGSYTCEVSNGVGEAKSYSIDLSVLAAP--------------YFTVEPEFINAAEEETVTFECKASGLP--EPEIHWV  160 (745)
Q Consensus        97 ~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p--------------~~~~~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~  160 (745)
                      +|+|.|+|.+.+..+......+.|.|..+|              .+...|....+.+|++++|.|.+.+.+  .+.+.|+
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~  171 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWV  171 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEE
Confidence            999999999988654323233456665543              234446677899999999999999866  4799999


Q ss_pred             eCC--Eec---c-----------CCCCCCceeec------CceEEEccCCCCCCEEEEEEEEeC
Q psy11701        161 HNG--KPI---S-----------QAPPNPRRKVG------PNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       161 ~~g--~~~---~-----------~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      |++  ..+   .           ......++...      ...|.|.+++.+|+|.|+|.+.|.
T Consensus       172 k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          172 RQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            963  211   0           01112233221      238999999999999999999997

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.77  E-value=1.7e-19  Score=172.29  Aligned_cols=171  Identities=15%  Similarity=0.214  Sum_probs=101.7

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--Eec------------CCCCCeEecc--CCcEEEEccCCCC
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VPI------------NPSDRISQGN--YGKSLIIKHVEFS   97 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~i------------~~~~~~~~~~--~~~~L~i~~~~~~   97 (745)
                      ..+...|..+.+.+|++++|.|.+.+.|.+.+.|+|++  ..+            ....|+....  ...+|.|.+++.+
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  103 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSE  103 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CC
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHH
Confidence            34455688889999999999999998887899999853  211            0022333221  2237999999999


Q ss_pred             CCEEEEEEEEeCCeeeEEEEEEEEEEe---cCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEEEEeCCEeccCC-CC
Q psy11701         98 DQGSYTCEVSNGVGEAKSYSIDLSVLA---APYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWVHNGKPISQA-PP  171 (745)
Q Consensus        98 d~G~Y~C~~~~~~g~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W~~~g~~~~~~-~~  171 (745)
                      |+|.|+|.+.+..+........|.|..   +|.+...+......+|++++|.|.+.|. |.+ .++|+|+|..+... ..
T Consensus       104 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  183 (233)
T 3bqu_C          104 DVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  183 (233)
T ss_dssp             CCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEE
T ss_pred             HCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceE
Confidence            999999999876543332334566654   6777665544444579999999999884 443 79999999887643 00


Q ss_pred             -------CCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        172 -------NPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       172 -------~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                             ........+.|.|..+..+|+|.|+|.|.|...
T Consensus       184 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          184 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             ecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence                   000111224689999999999999999998743

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.76  E-value=1.5e-17  Score=152.89  Aligned_cols=160  Identities=20%  Similarity=0.297  Sum_probs=116.0

Q ss_pred             cCceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEecc---CCCC--------C----Ccee-ecCceEEEccCCCCCCE
Q psy11701        131 EPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPIS---QAPP--------N----PRRK-VGPNRITIENLRKSDTG  193 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~---~~~~--------~----~~~~-~~~~~L~i~~v~~~d~G  193 (745)
                      .|....+.+|++++|.|.+.+ .+.+.+.|+|+|..+.   ....        .    .+.. ..+++|.|.+++.+|+|
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G   83 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG   83 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence            466778899999999999975 4556999999987542   1100        0    1222 24678999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecC--CeeeeCCCceEEecCc-eEEEEEEEeec-CCCeEEEeeCCEEccCceEEEeec
Q psy11701        194 NYGCNATNSLGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGK-TVVLTCRVFGA-PKPEVNWIHNQKELTGGRYTILET  269 (745)
Q Consensus       194 ~Y~C~~~~~~g~~~~~~~l~v~~~~--p~~~~~~~~~~v~~g~-~~~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~  269 (745)
                      .|+|.+.+..+.....+.|.|...+  |.+...+  .....|. .++|.|.+.+. |.+.+.|++++..+..       .
T Consensus        84 ~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~-------~  154 (193)
T 2if7_A           84 SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS-------Q  154 (193)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES-------S
T ss_pred             eEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC-------C
Confidence            9999999988877777888887533  3343333  2233465 89999999985 4789999999876532       3


Q ss_pred             CcEEEcccCCC-CCEEEEEEEEeCCceEEEE
Q psy11701        270 GDLKITDVAFA-DSGEYTCFARNKLGTAQGS  299 (745)
Q Consensus       270 ~~l~i~~~~~~-d~G~Y~C~~~n~~g~~~~~  299 (745)
                      +.|.|.....+ |.|.|+|.|.|..|..+..
T Consensus       155 ~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          155 PNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             SEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             CeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence            45677544444 8999999999999887554

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=3.8e-18  Score=163.71  Aligned_cols=166  Identities=17%  Similarity=0.250  Sum_probs=119.4

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC----CCeeEEEECC--Eec------------CCCCCeEecc--CCcEEEEccCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP----LPQTIWSKDG--VPI------------NPSDRISQGN--YGKSLIIKHVE   95 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p----~~~v~W~~~~--~~i------------~~~~~~~~~~--~~~~L~i~~~~   95 (745)
                      +...|....+.+|++|+|.|.+.+.|    .+.+.|+|++  ..+            ....|+....  ...+|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence            45667888999999999999999887    7799999952  211            0124555432  22379999999


Q ss_pred             CCCCEEEEEEEEeCCeeeEEEEEEEEEEecC------eEEecCceeEeeCCCeEEEEEEEeecC--CCeEEEEeC--CEe
Q psy11701         96 FSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP------YFTVEPEFINAAEEETVTFECKASGLP--EPEIHWVHN--GKP  165 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p------~~~~~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--g~~  165 (745)
                      .+|+|.|+|.+.+..+......+.|.|..++      .+...+....+.+|++++|.|.+.+.|  .+.+.|+|+  +..
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~  163 (240)
T 1moe_A           84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQG  163 (240)
T ss_dssp             GGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSC
T ss_pred             hhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCC
Confidence            9999999999998755433344667776643      245557778899999999999999876  359999995  322


Q ss_pred             cc--------C------CCCCCceeec------CceEEEccCCCCCCEEEEEEEEe
Q psy11701        166 IS--------Q------APPNPRRKVG------PNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       166 ~~--------~------~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      +.        .      .....++...      ...|.|.+++.+|+|.|+|.|.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          164 LEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             cEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            21        0      0011222221      24799999999999999999984

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.76  E-value=2.7e-16  Score=142.38  Aligned_cols=235  Identities=17%  Similarity=0.281  Sum_probs=165.0

Q ss_pred             eEeeccceeEecCCcEEEEEEEee-cC---CCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGG-TP---LPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g-~p---~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      +.+.|....+..|+.++|+|.+.| .|   ..+++|+|||.++.        .....|.|..++..|+|.|+|.+.+..|
T Consensus         5 Vs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~Is--------GaT~tLti~s~t~sdSG~YqCvVTDa~G   76 (304)
T 3shs_A            5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE--------NNTATLTVADATSENAGSYKVTVQDTDT   76 (304)
T ss_dssp             EEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECS--------CCSSEEEESSCCGGGCEEEEEEEEETTT
T ss_pred             EEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCcccc--------CCcceEEeeeccccCCeEEEEEEEECCC
Confidence            456788889999999999999954 46   34899999999876        3345799999999999999999999776


Q ss_pred             eeEEEEEEEEEEec--CeEEe-cCceeEeeCCCeEEEEEEE--ee-cC-----CCeEEEEeCCEeccCCCCCCceeecCc
Q psy11701        112 EAKSYSIDLSVLAA--PYFTV-EPEFINAAEEETVTFECKA--SG-LP-----EPEIHWVHNGKPISQAPPNPRRKVGPN  180 (745)
Q Consensus       112 ~~~~~~~~l~V~~~--p~~~~-~~~~~~v~~G~~~~l~C~~--~~-~p-----~~~v~W~~~g~~~~~~~~~~~~~~~~~  180 (745)
                      -.... ..+.|...  +.+.. .|....+..|+.+.|.+.+  .| .+     ..+++|+||+..+..          ..
T Consensus        77 cs~tS-s~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg----------Aq  145 (304)
T 3shs_A           77 MTSVE-SEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT----------TQ  145 (304)
T ss_dssp             CCEEE-CCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES----------SS
T ss_pred             Ceeee-eeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC----------cc
Confidence            54422 23333333  23322 3666666778899999988  54 33     469999999987752          23


Q ss_pred             eEEEccCCCCCCEEEEEEEEeCCce--EEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEee--------cCCC--
Q psy11701        181 RITIENLRKSDTGNYGCNATNSLGY--VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG--------APKP--  248 (745)
Q Consensus       181 ~L~i~~v~~~d~G~Y~C~~~~~~g~--~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~--------~p~~--  248 (745)
                      .|++...+..++|.|+|.+.+..+.  .+.+..|.+.. -+.-........+..|+.+.|...+..        .|..  
T Consensus       146 ~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (304)
T 3shs_A          146 DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT-MNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTI  224 (304)
T ss_dssp             EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECE-EEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEE
T ss_pred             ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEc-cccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEE
Confidence            7788888999999999999988764  33344444432 111122234456778999998776532        2222  


Q ss_pred             eEEEeeC--CEE----c------cCceEEEeecCcEEEcccCCCCCEEEEEEEE
Q psy11701        249 EVNWIHN--QKE----L------TGGRYTILETGDLKITDVAFADSGEYTCFAR  290 (745)
Q Consensus       249 ~i~W~~~--~~~----~------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  290 (745)
                      .+.|+..  +..    +      .-+.+.+..++.|.-.....+|...|.|.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (304)
T 3shs_A          225 KYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK  278 (304)
T ss_dssp             EEEEEEECTTCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEEeecCccCchhhhhhhhhhhccceeCCCcceeecccccccchheeeHHH
Confidence            4678753  221    1      1235677778889999999999999999985

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.76  E-value=7e-18  Score=159.26  Aligned_cols=173  Identities=18%  Similarity=0.295  Sum_probs=120.2

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeCC---Ee------------ccCCCCCCceee----cCceEEEc
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNG---KP------------ISQAPPNPRRKV----GPNRITIE  185 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g---~~------------~~~~~~~~~~~~----~~~~L~i~  185 (745)
                      |.+...| ...+.+|++++|.|.+.+. |.+.+.|+|..   ..            ........++..    ....|.|.
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            3455556 7889999999999999998 88999999931   10            111111123221    23579999


Q ss_pred             cCCCCCCEEEEEEEEeCCc-----eEEEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEee-cCCC-eEEEeeC
Q psy11701        186 NLRKSDTGNYGCNATNSLG-----YVYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHN  255 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g-----~~~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~-~p~~-~i~W~~~  255 (745)
                      +++.+|+|.|+|.+.+..|     .....+.|.|..   .+|.+...+....+..|+.++|.|.+.+ .|.+ .+.|+++
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~  160 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN  160 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence            9999999999999998775     222346677764   3566665555555567899999999988 4666 8999999


Q ss_pred             CEEccCce---EEE------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy11701        256 QKELTGGR---YTI------LETGDLKITDVAFADSGEYTCFARNKLGTAQGS  299 (745)
Q Consensus       256 ~~~~~~~~---~~~------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~  299 (745)
                      +..+....   ...      .....|.|.....+|.|.|+|.|.|..+.....
T Consensus       161 g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          161 GTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             TEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             CEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            98875421   000      112247788888889999999999998765544

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.76  E-value=3.8e-18  Score=163.60  Aligned_cols=166  Identities=16%  Similarity=0.168  Sum_probs=116.6

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--Ee---c---------CCCCCeEecc--CCcEEEEccCCCCCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VP---I---------NPSDRISQGN--YGKSLIIKHVEFSDQ   99 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~---i---------~~~~~~~~~~--~~~~L~i~~~~~~d~   99 (745)
                      +...|..+.+.+|++++|.|.+.+.|.+.+.|+|+.  ..   +         ....|+....  ...+|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence            456778889999999999999998888899999843  11   1         0134555432  234899999999999


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEEEecCe-------------EEecCceeEeeCCCeEEEEEEEeecC--CCeEEEEeC--
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSVLAAPY-------------FTVEPEFINAAEEETVTFECKASGLP--EPEIHWVHN--  162 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V~~~p~-------------~~~~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--  162 (745)
                      |.|.|.+.+..+......+.|.|..+|.             +...+....+.+|++++|.|.+.+.+  .+.+.|+|+  
T Consensus        84 G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~  163 (242)
T 2znx_A           84 GMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFP  163 (242)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECT
T ss_pred             EEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCC
Confidence            9999999886543333345677766542             33444445689999999999999865  478999994  


Q ss_pred             CEecc-------CC------CCCCceee------cCceEEEccCCCCCCEEEEEEEEe
Q psy11701        163 GKPIS-------QA------PPNPRRKV------GPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       163 g~~~~-------~~------~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      +..+.       ..      ....++..      ....|.|.+++.+|+|.|+|.|.|
T Consensus       164 ~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  221 (242)
T 2znx_A          164 GNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXD  221 (242)
T ss_dssp             TSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccC
Confidence            32221       00      01222222      124899999999999999999986

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.76  E-value=3.2e-17  Score=170.22  Aligned_cols=267  Identities=13%  Similarity=0.125  Sum_probs=174.4

Q ss_pred             CCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEE
Q psy11701        218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQ  297 (745)
Q Consensus       218 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~  297 (745)
                      +..+...|....+.+|++++|.|.+.   .+.+.|++++..+...+. ....+.|+|.++...|+|.|.|.+.+.  ...
T Consensus       203 ~t~i~v~P~~~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i~~~ri-~~~~~~L~I~nl~~sd~g~y~~~C~~~--~~i  276 (488)
T 2q7n_A          203 NTETNVFPQDKVVLAGSNMTICCMSP---TKVLSGQIGNTLRPLIHL-YGQTVAIHILNIPVSENSGTNIIFITD--DDV  276 (488)
T ss_dssp             CSSCCEECTTCEEESSCCCEEEECCS---SCEEEEEETTEECCCEEC-SSSCEEEECCSCCCCCSSCEEEEEEES--SCE
T ss_pred             CCceEECCCCCEEcCCCCEEEEEECC---CCEEEEEECCEECchhhc-cceEEEEEEeCCCcccCCcEEEEEEcC--CeE
Confidence            45566788888899999999999987   358999999988765431 112346999999999988887776632  223


Q ss_pred             EEEEEEEeecceeecCCCcEEEecCCeEEEEEEEEecCC--------CCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEe
Q psy11701        298 GSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPS--------LKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT  369 (745)
Q Consensus       298 ~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~~~~~--------~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~  369 (745)
                      ..+.+.+..+|   ..|.++.+.....-.+.|.+.....        ..+.+.+...+.......... .........+.
T Consensus       277 ~~~~l~v~~pP---~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~-~~~~~~~ct~~  352 (488)
T 2q7n_A          277 YGTVVFAGYPP---DVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEG-LTNETYRLGVQ  352 (488)
T ss_dssp             EEEEEEEECCC---CCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSC-CCSSCEEEEEE
T ss_pred             EEEEEEeeCCC---CCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccc-cCCceEEEEEc
Confidence            36677776655   4455566544333455555543211        124444433321110000000 00122344454


Q ss_pred             cCCCCCCEEEEEEEEeCCceEEEEEEEEEe----ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEec
Q psy11701        370 KSSELDSGQYTCRAQTELDFIEAQATLTVQ----VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTE  445 (745)
Q Consensus       370 ~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~----~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~  445 (745)
                      .......+.|+|.|.|..|....  .+.+.    .+|.+|.++++.. .+.+++.|+|+++..  .++.+..|+|+|+..
T Consensus       353 l~~~~t~Y~f~V~A~N~~G~~~S--~~~~~~~~~v~P~PP~nl~v~~-~s~~sl~LsW~pP~~--~~g~~l~YeV~Yr~~  427 (488)
T 2q7n_A          353 MHPGQEIHNFTLTGRNPLGQAQS--AVVINVTERVAPHDPTSLKVKD-INSTVVTFSWYLPGN--FTKINLLCQIEICKA  427 (488)
T ss_dssp             CCSSCCCCEEEEEEEETTEEEEE--EEECCGGGTBCCCCCEEEEEEE-CSTTCEEEEEEEEEE--CSSSEEEEEEEEBCT
T ss_pred             CCCCccEEEEEEEEEeCCCCccc--eEEEEecCCCCCCCCeEEEEEe-cCCCEEEEEEeCCCC--CCCcceEEEEEEEEC
Confidence            33334778999999999998544  33332    4689999999877 788999999999643  356789999999876


Q ss_pred             cCCCCce-eEEEEccCceeEE--EecccccCcceeEEEEEecCCCC---CCCCcceEEeCCCC
Q psy11701        446 KDGEGSI-RELIVNKGESTTT--EVDKFVPASKNFARVLAFNGAYN---GPPSEIISFVTPEG  502 (745)
Q Consensus       446 ~~~~~~~-~~~~~~~~~~~~~--~i~~L~~~~~Y~~~V~a~n~~G~---g~~S~~~~~~t~~~  502 (745)
                      +..  .+ ....+.......+  .|.+|.|++.|.|+|+|.| .|.   |++|..+.++|.++
T Consensus       428 ~~~--~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e~  487 (488)
T 2q7n_A          428 NSK--KEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTEA  487 (488)
T ss_dssp             TSC--CEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCCC
T ss_pred             CCC--CceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCCC
Confidence            543  22 2233312223455  9999999999999999999 888   57777778877654

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.76  E-value=3.7e-18  Score=164.94  Aligned_cols=260  Identities=14%  Similarity=0.142  Sum_probs=111.3

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeC--CEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHN--GKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~--g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +.+.|....+.+|+++.|.|.+.- +.+ .+.|.-.  +..+..      .......|.|.+++.+  |.|+|.+.....
T Consensus         2 ~~v~P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~------~g~~~~~~~l~~v~~~--~~y~C~~~~~~~   72 (291)
T 1mq8_A            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLL------PGNNRKVYELSNVQED--SQPMCYSNCPDG   72 (291)
T ss_dssp             EEEECSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCC------SCSSEEEEEEESCCSC--CCCEEEEECSSC
T ss_pred             eEEeCCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCccccc------CCCceEEEEEEecccC--CeEEEEEEcCCc
Confidence            345577788999999999999964 444 4888641  111100      0011125788888854  469999976544


Q ss_pred             eEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCC-C--eEEEeeCCEEccCceEEE-eecCcEEEcccCCC
Q psy11701        205 YVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPK-P--EVNWIHNQKELTGGRYTI-LETGDLKITDVAFA  280 (745)
Q Consensus       205 ~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~-~--~i~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~  280 (745)
                      .....+.|.|...|-.+.+.+....+.+|+.++|.|.+.+..+ .  .|+|++++..+....... .....|.+.....+
T Consensus        73 ~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D  152 (291)
T 1mq8_A           73 QSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDH  152 (291)
T ss_dssp             EEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSC
T ss_pred             cEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeecc
Confidence            5566678888875555555555556888999999999987643 3  589999997765322100 11224666666677


Q ss_pred             CCEEEEEEEEeCCce--------EEEEEEEEEeeccee-ecCCCcEEEecCCeEEEEEEEEecCCC-CcEEEEeeCCeec
Q psy11701        281 DSGEYTCFARNKLGT--------AQGSGSLTVKEHTHI-TDQPEDYEVEAGQSATFRCNAVSDPSL-KLSIVWLRGSEPI  350 (745)
Q Consensus       281 d~G~Y~C~~~n~~g~--------~~~~~~l~v~~~p~~-~~~p~~~~~~~g~~~~l~C~~~~~~~~-~~~i~W~~~~~~~  350 (745)
                      |.+.|+|+|.+..+.        .+....|.|..+|.. +.......+..|+.++|.|.+.+.+++ ++.+.|.+++..+
T Consensus       153 ~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l  232 (291)
T 1mq8_A          153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL  232 (291)
T ss_dssp             SSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------------------------------
T ss_pred             CCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEec
Confidence            777999999987552        234456777766422 111111256789999999999997554 5689999999887


Q ss_pred             cCCCCCeEEEcCCeEEEEecC---CC--CCCEEEEEEEEeCCceEEEEEEEEEecc
Q psy11701        351 DFESEPRFVQSNDYSLTVTKS---SE--LDSGQYTCRAQTELDFIEAQATLTVQVP  401 (745)
Q Consensus       351 ~~~~~~~~~~~~~~~l~i~~~---~~--~~~g~y~c~a~n~~g~~~~~~~l~v~~p  401 (745)
                      ....    . .+...+.+...   ..  ++.+.|+|.+.+..........|.|..-
T Consensus       233 ~~~~----~-~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~  283 (291)
T 1mq8_A          233 NPTV----T-YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF  283 (291)
T ss_dssp             --------------------------------------------------------
T ss_pred             Ccee----e-ecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcC
Confidence            6311    1 11223333322   23  3456777888875544556666766543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.76  E-value=1.4e-18  Score=166.50  Aligned_cols=216  Identities=15%  Similarity=0.173  Sum_probs=126.6

Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCC--ceeecCceEEEccCCCCCCEEEEEEEE
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP--RRKVGPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      ..+|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+.......  ........|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A            5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            34677777776 67899999999999975 567999999987553110000  011234689999999999999999998


Q ss_pred             eCCc-----eEEEEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCce-EEEe----e
Q psy11701        201 NSLG-----YVYKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGR-YTIL----E  268 (745)
Q Consensus       201 ~~~g-----~~~~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~----~  268 (745)
                      +...     ..+..+.|.|..  .+|.+...+. ..+.+|++++|.|.+.+.+ +.+.|+|++..+.... ....    .
T Consensus        83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~  160 (257)
T 1b6u_A           83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTF  160 (257)
T ss_dssp             CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCC
T ss_pred             ccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCce
Confidence            6431     223345666654  3466665554 4678999999999987754 6899999987654221 1111    1


Q ss_pred             cCcEEEcccCCCCCEEEEEEEEeCCc-----eEEEEEEEEEeecceeecC-CCcEEEecCCeEEEEEEEEecCCCCcEEE
Q psy11701        269 TGDLKITDVAFADSGEYTCFARNKLG-----TAQGSGSLTVKEHTHITDQ-PEDYEVEAGQSATFRCNAVSDPSLKLSIV  342 (745)
Q Consensus       269 ~~~l~i~~~~~~d~G~Y~C~~~n~~g-----~~~~~~~l~v~~~p~~~~~-p~~~~~~~g~~~~l~C~~~~~~~~~~~i~  342 (745)
                      .+.|.|.+++  |+|.|+|.+.+...     ..+..+.|.|..+|....+ |.......|..+.|.|.+...-   ..+.
T Consensus       161 ~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~~~~~---~~~~  235 (257)
T 1b6u_A          161 QADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKL---ISEE  235 (257)
T ss_dssp             BEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-----------------------------------
T ss_pred             eEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEEcchH---HHHH
Confidence            4579999998  99999999997532     2345677888887765422 2223446788899998764332   4677


Q ss_pred             EeeCC
Q psy11701        343 WLRGS  347 (745)
Q Consensus       343 W~~~~  347 (745)
                      |...+
T Consensus       236 ~~~~~  240 (257)
T 1b6u_A          236 DLNLD  240 (257)
T ss_dssp             -----
T ss_pred             Hhhhh
Confidence            76543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.75  E-value=1.2e-17  Score=157.42  Aligned_cols=171  Identities=17%  Similarity=0.230  Sum_probs=120.6

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Ee---cC--------------CCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VP---IN--------------PSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~---i~--------------~~~~~~~~~----~~~~L~   90 (745)
                      .+.+|....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..   +.              ...|+.+..    ...+|+
T Consensus         3 ~~~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (220)
T 2fbj_H            3 KLLESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQ   82 (220)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEE
T ss_pred             eEecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEE
Confidence            34556778899999999999998765  5689999842  21   10              124666542    234899


Q ss_pred             EccCCCCCCEEEEEEEEeCCeee--EEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CC--CeEEEEe
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGEA--KSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PE--PEIHWVH  161 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~~--~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~--~~v~W~~  161 (745)
                      |.+++.+|+|.|.|.+.+..+..  ....+.|.|..    +|.+...+ ...+.+|+.++|.|.+.+. |.  +.+.|++
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~  161 (220)
T 2fbj_H           83 MSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK  161 (220)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred             ECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence            99999999999999999864421  22335677764    45555544 3346789999999999885 76  6999999


Q ss_pred             CCEeccCCCCCCc-----eeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        162 NGKPISQAPPNPR-----RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       162 ~g~~~~~~~~~~~-----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      ++..+........     .....+.|.|.+...+|+|.|+|.|.|..+...
T Consensus       162 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          162 SGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            9876521101000     011123589999999999999999999987644

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.75  E-value=6.4e-18  Score=159.97  Aligned_cols=170  Identities=14%  Similarity=0.154  Sum_probs=118.9

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Eec-----------------CCCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VPI-----------------NPSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~i-----------------~~~~~~~~~~----~~~~L~   90 (745)
                      .+.+|....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+                 ....|+.+..    ...+|+
T Consensus         3 ~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (225)
T 1op3_H            3 QLVESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQ   82 (225)
T ss_dssp             EEEEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             eEEcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEE
Confidence            34566778899999999999998876  6789999842  211                 0134665532    235899


Q ss_pred             EccCCCCCCEEEEEEEEeCCe-----e--eEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eE
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVG-----E--AKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PEP-EI  157 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g-----~--~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v  157 (745)
                      |.+++.+|+|.|.|.+.+..|     .  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.|. |.+ .+
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  162 (225)
T 1op3_H           83 MHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  162 (225)
T ss_dssp             ECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEE
T ss_pred             ECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEE
Confidence            999999999999999998754     2  122345777775    3555443322246789999999999885 776 99


Q ss_pred             EEEeCCEeccCCCCCCcee------ecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        158 HWVHNGKPISQAPPNPRRK------VGPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       158 ~W~~~g~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      .|++++..+.... .....      ...+.|.|.++..+| |.|+|.|.|..+...
T Consensus       163 ~W~~~~~~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          163 SWNSGALTSGVHT-FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             ECCTTSCCTTCEE-CCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             EEecCCCcCCeEe-cCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            9999987643110 11111      112468999999888 999999999766433

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.75  E-value=2.7e-17  Score=155.28  Aligned_cols=174  Identities=18%  Similarity=0.229  Sum_probs=120.7

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Ee---c--------------CCCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VP---I--------------NPSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~---i--------------~~~~~~~~~~----~~~~L~   90 (745)
                      .+..|..+.+.+|++|+|.|.+.+.+  .+.+.|+|+.  ..   +              ....|+.+..    ...+|.
T Consensus         3 ~v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (223)
T 1dee_B            3 QLVESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQ   82 (223)
T ss_dssp             EEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred             eEEcCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEE
Confidence            34566788899999999999998765  4689999842  11   1              0124665532    134899


Q ss_pred             EccCCCCCCEEEEEEEEeCCe---e--eEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEEE
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVG---E--AKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHW  159 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g---~--~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W  159 (745)
                      |.+++.+|+|.|+|.+.+..|   .  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  162 (223)
T 1dee_B           83 MNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSW  162 (223)
T ss_dssp             ECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             ECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEe
Confidence            999999999999999987642   1  122335777763    4555433222345789999999999885 776 9999


Q ss_pred             Ee-CCEeccCCCCCC-----ceeecCceEEEccCCC--CCCEEEEEEEEeCCceEEEE
Q psy11701        160 VH-NGKPISQAPPNP-----RRKVGPNRITIENLRK--SDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       160 ~~-~g~~~~~~~~~~-----~~~~~~~~L~i~~v~~--~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      ++ +|..+.......     ......+.|.|.....  +|.|.|+|.|.|..+.....
T Consensus       163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~  220 (223)
T 1dee_B          163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD  220 (223)
T ss_dssp             EETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred             EccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence            99 988875310000     1111234688888776  88999999999998865544

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.75  E-value=7e-19  Score=168.22  Aligned_cols=169  Identities=19%  Similarity=0.290  Sum_probs=119.7

Q ss_pred             ccceeEecCCcEEEEEEEeecC-CC-eeEEEECC--Eec------------CCCCCeEecc--CCcEEEEccCCCCCCEE
Q psy11701         40 RKKEVALRNKKVELFCIFGGTP-LP-QTIWSKDG--VPI------------NPSDRISQGN--YGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~p-~~-~v~W~~~~--~~i------------~~~~~~~~~~--~~~~L~i~~~~~~d~G~  101 (745)
                      |....+.+|++++|.|.+.+.+ .+ .+.|+|++  ..+            ....++....  ...+|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            7788899999999999998764 34 79999863  222            0124554432  33489999999999999


Q ss_pred             EEEEEEeCCee--eEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCEeccCCCCCC
Q psy11701        102 YTCEVSNGVGE--AKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASGL-PE-PEIHWVHNGKPISQAPPNP  173 (745)
Q Consensus       102 Y~C~~~~~~g~--~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~~~~~~~  173 (745)
                      |+|.+.+..+.  .....+.|.|.    .+|.+...+......+|+.++|.|.+.+. |. +.++|+|||..+.......
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  185 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT  185 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence            99999988762  22234566663    35555554443344579999999999885 44 4899999999886431100


Q ss_pred             -------ceeecCceEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy11701        174 -------RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK  208 (745)
Q Consensus       174 -------~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~  208 (745)
                             ......+.|.|.++..+|+|.|+|.|.|..+....
T Consensus       186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  227 (234)
T 2j6e_L          186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  227 (234)
T ss_dssp             CCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCE
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEE
Confidence                   01112357999999999999999999998765433

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.75  E-value=1.1e-17  Score=155.34  Aligned_cols=166  Identities=15%  Similarity=0.208  Sum_probs=118.8

Q ss_pred             EEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce--eecCceEEEccCCCCCCEEEEEEE
Q psy11701        122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR--KVGPNRITIENLRKSDTGNYGCNA  199 (745)
Q Consensus       122 V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~~  199 (745)
                      +..+|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+.........  ......|.|.+++.+|+|.|+|.+
T Consensus         5 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a   82 (201)
T 1nkr_A            5 VHRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG   82 (201)
T ss_dssp             --CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeE
Confidence            345777777776 67899999999999974 77899999998765421100001  123468999999999999999999


Q ss_pred             EeCCc-----eEEEEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCce-EEEe----
Q psy11701        200 TNSLG-----YVYKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGR-YTIL----  267 (745)
Q Consensus       200 ~~~~g-----~~~~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~----  267 (745)
                      .+...     ..+..+.|.|..  .+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|++++..+.... ....    
T Consensus        83 ~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~  160 (201)
T 1nkr_A           83 SVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGT  160 (201)
T ss_dssp             EBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTE
T ss_pred             ecCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCc
Confidence            86531     223345666654  2466666555 46889999999999876 567899999987664321 1111    


Q ss_pred             ecCcEEEcccCCCCCEEEEEEEEeCC
Q psy11701        268 ETGDLKITDVAFADSGEYTCFARNKL  293 (745)
Q Consensus       268 ~~~~l~i~~~~~~d~G~Y~C~~~n~~  293 (745)
                      ..+.|.|.+++  |+|.|+|.|.+..
T Consensus       161 ~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          161 FQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             eEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            14579999998  9999999998753

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.75  E-value=4.4e-18  Score=159.95  Aligned_cols=169  Identities=21%  Similarity=0.367  Sum_probs=121.1

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCC--Eec---------cCCCCCCceee----cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG--KPI---------SQAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g--~~~---------~~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      +...|....+.+|+++.|.|.+.+.|.+.+.|+|++  ..+         .......++..    ....|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence            445577888999999999999999888899999853  211         00111123222    234899999999999


Q ss_pred             EEEEEEEEeCCceEEE-EEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEee-cCCC-eEEEeeCCEEccCc-eEEE
Q psy11701        193 GNYGCNATNSLGYVYK-DVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGG-RYTI  266 (745)
Q Consensus       193 G~Y~C~~~~~~g~~~~-~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~-~~~~  266 (745)
                      |.|+|.+.|..+.... ...|.|..  .+|.+...+.......|+.++|.|.+.+ .|.+ .+.|++++..+... ....
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~  163 (213)
T 3d9a_L           84 GMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSW  163 (213)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEE
T ss_pred             EEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecC
Confidence            9999999988765332 24556643  3566665444444457999999999987 5554 89999999887655 2111


Q ss_pred             ----------eecCcEEEcccCCCCCEEEEEEEEeCCceE
Q psy11701        267 ----------LETGDLKITDVAFADSGEYTCFARNKLGTA  296 (745)
Q Consensus       267 ----------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~  296 (745)
                                ...+.|.|.++..+|.|.|+|.|.|.....
T Consensus       164 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          164 TDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             CCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence                      012379999999999999999999976553

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.74  E-value=1.5e-17  Score=160.21  Aligned_cols=167  Identities=20%  Similarity=0.207  Sum_probs=116.0

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC-----CCeeEEEECC--Ee---cC---------CCCCeEecc--CCcEEEEccC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP-----LPQTIWSKDG--VP---IN---------PSDRISQGN--YGKSLIIKHV   94 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p-----~~~v~W~~~~--~~---i~---------~~~~~~~~~--~~~~L~i~~~   94 (745)
                      +...|..+.+.+|++++|.|.+.+.|     .+.+.|+|++  ..   +.         ...|+....  ...+|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   83 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   83 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence            44567888999999999999998887     6799999842  21   10         134555432  2348999999


Q ss_pred             CCCCCEEEEEEEEeCCeeeEEEEEEEEEEecC-------------eEEecCceeEeeCCCeEEEEEEEeecC--CCeEEE
Q psy11701         95 EFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP-------------YFTVEPEFINAAEEETVTFECKASGLP--EPEIHW  159 (745)
Q Consensus        95 ~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p-------------~~~~~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W  159 (745)
                      +.+|+|.|+|.+.+..+......+.|.|..++             .....+....+.+|++++|.|.+.+.+  .+.+.|
T Consensus        84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W  163 (247)
T 1svz_A           84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHW  163 (247)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEE
T ss_pred             CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEE
Confidence            99999999999988654333334567776542             233344445689999999999998864  569999


Q ss_pred             EeCC--Eec------cCC--------CCCCceee------cCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        160 VHNG--KPI------SQA--------PPNPRRKV------GPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       160 ~~~g--~~~------~~~--------~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      +|++  ..+      ...        ....++..      ....|.|.+++.+|+|.|+|.+.|.
T Consensus       164 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          164 VKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            9963  211      000        00122222      1248999999999999999999985

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.74  E-value=8.2e-18  Score=160.47  Aligned_cols=163  Identities=15%  Similarity=0.308  Sum_probs=121.7

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecCC-CeEEEEeCCEecc----------CCCCCCce-----------eecCceEEEccC
Q psy11701        130 VEPEFINAAEEETVTFECKASGLPE-PEIHWVHNGKPIS----------QAPPNPRR-----------KVGPNRITIENL  187 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~~g~~~~----------~~~~~~~~-----------~~~~~~L~i~~v  187 (745)
                      ..|....+.+|+++.|.|.+.+.+. +.+.|++++....          ......+.           ...++.|.|.++
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v   84 (231)
T 2pet_A            5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEA   84 (231)
T ss_dssp             CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSC
T ss_pred             cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEccc
Confidence            3477788999999999999999885 8999998654311          00001111           223456999999


Q ss_pred             CCCCCEEEEEEEEeCC-ceEEEEEEEEEeecC--CeeeeCCCceEEecCceE-EEEEEE-eecCCCeEEEeeCCEEccCc
Q psy11701        188 RKSDTGNYGCNATNSL-GYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTV-VLTCRV-FGAPKPEVNWIHNQKELTGG  262 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~-g~~~~~~~l~v~~~~--p~~~~~~~~~~v~~g~~~-~l~C~~-~~~p~~~i~W~~~~~~~~~~  262 (745)
                      +.+|+|.|+|.+.+.. +.....+.|.|...+  |.+...+....+.+|+.+ +|.|.+ .+.|.+.+.|++++..+...
T Consensus        85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~  164 (231)
T 2pet_A           85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVP  164 (231)
T ss_dssp             CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCC
T ss_pred             CcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccc
Confidence            9999999999999987 777777888887533  556666666677789988 999999 88999999999999887533


Q ss_pred             -----eEEEeec------------CcEEEcccCCCCCEEEEEEEEeC
Q psy11701        263 -----RYTILET------------GDLKITDVAFADSGEYTCFARNK  292 (745)
Q Consensus       263 -----~~~~~~~------------~~l~i~~~~~~d~G~Y~C~~~n~  292 (745)
                           ++.+...            +.|.|.....+|.|.|+|.|.|.
T Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          165 VEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             SSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             cccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence                 2332211            44777766666799999999994

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.74  E-value=8.6e-18  Score=161.88  Aligned_cols=170  Identities=16%  Similarity=0.220  Sum_probs=120.3

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE----------------CCEecCCC---CCeEecc---CCcEEEEcc
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK----------------DGVPINPS---DRISQGN---YGKSLIIKH   93 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~----------------~~~~i~~~---~~~~~~~---~~~~L~i~~   93 (745)
                      +...|..+.+.+|++++|.|.+.+.+.+.+.|+|                ++..+...   .|+.+..   ...+|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   83 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS   83 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence            4456778899999999999999989999999999                33333222   3444432   234899999


Q ss_pred             CCCCCCEEEEEEEEeCCe---eeEEEEEEEEEEe------cCeEEe-cCceeEeeCCCeEEEEEEEeecCCC--eEEEEe
Q psy11701         94 VEFSDQGSYTCEVSNGVG---EAKSYSIDLSVLA------APYFTV-EPEFINAAEEETVTFECKASGLPEP--EIHWVH  161 (745)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~g---~~~~~~~~l~V~~------~p~~~~-~~~~~~v~~G~~~~l~C~~~~~p~~--~v~W~~  161 (745)
                      ++.+|+|.|+|.+.+..+   ........|.|..      +|.+.. .+....+.+|+.++|.|.+.|.+++  .+.|+|
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  163 (246)
T 4dzb_B           84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  163 (246)
T ss_dssp             CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEE
Confidence            999999999999986532   1222335667763      555543 3555556779999999999986554  899999


Q ss_pred             CCEeccCCCCCC------------ceeecCceEEEccCCCCC-CEEEEEEEEeCCce
Q psy11701        162 NGKPISQAPPNP------------RRKVGPNRITIENLRKSD-TGNYGCNATNSLGY  205 (745)
Q Consensus       162 ~g~~~~~~~~~~------------~~~~~~~~L~i~~v~~~d-~G~Y~C~~~~~~g~  205 (745)
                      +|..+.......            ......+.|.|.....+| +|.|+|.|.|....
T Consensus       164 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          164 NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             TTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             CCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            999886432110            001111348888888888 99999999987543

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.74  E-value=6.6e-17  Score=161.48  Aligned_cols=226  Identities=12%  Similarity=0.068  Sum_probs=142.3

Q ss_pred             EEEecCCCCCCEEEEEEEE---eCCceEEEEEEE----EEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeE
Q psy11701        366 LTVTKSSELDSGQYTCRAQ---TELDFIEAQATL----TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGY  438 (745)
Q Consensus       366 l~i~~~~~~~~g~y~c~a~---n~~g~~~~~~~l----~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y  438 (745)
                      ..+..+.....+.++..|.   +..|..+.....    ....||.+|.++.+.. .+..++.++|+++...   +.+.+|
T Consensus        55 ~~~~~~~~~~~y~~~V~a~~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~-~~~~~~~c~W~~~~~~---~~~~~Y  130 (314)
T 3bpo_C           55 RRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIW-HNLSYMKCSWLPGRNT---SPDTNY  130 (314)
T ss_dssp             EEEEECCCSSCEEEEEEECC---------CCEEEEECCCCC-CCSSCEEEEEEE-ETTTEEEEEEECCC------CCCCE
T ss_pred             EEEEEEcCCCcEEEEEEEEecCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEE-CCCCeEEEEECCCCCC---CCCccE
Confidence            3445566677777887774   333322222221    2235777889999877 7889999999986432   457899


Q ss_pred             EEEEEeccCCCCce-eEEEEccCceeEEEecccc----cCcceeEEEEEecCCCCCCCCcceEEeC-CCCCCCCCCceeE
Q psy11701        439 KVQTWTEKDGEGSI-RELIVNKGESTTTEVDKFV----PASKNFARVLAFNGAYNGPPSEIISFVT-PEGVPGTVQSLEA  512 (745)
Q Consensus       439 ~i~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~----~~~~Y~~~V~a~n~~G~g~~S~~~~~~t-~~~~P~~p~~~~~  512 (745)
                      .|.||..+...... ..... ......+.+..+.    ..+.|.|+|.|.|..|.+..+. ..+.+ ....|++|.++++
T Consensus       131 ~l~y~~~~~~~~~~C~~~~~-~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~~-~~~~~~~~v~P~pP~~l~~  208 (314)
T 3bpo_C          131 TLYYWHRSLEKIHQCENIFR-EGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSF-NIVPLTSRVKPDPPHIKNL  208 (314)
T ss_dssp             EEEEEESSCSSCEECCCEEE-ETTEEEEEEECCC--------CCEEEEEEETTSCSCCEE-EEECSSSSEECCCCEEEEE
T ss_pred             EEEEEeCCCCccccCcCeec-CCCeEEEEECCCCccccceeEEEEEEEEEcCCCceeccc-EEEehhheEeeCCCCEEEE
Confidence            99998764321111 01112 2344667776665    3789999999999999886553 44543 3356999999998


Q ss_pred             EEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCccc-------ccccccCCCcceeeecCCCCCccEEEEEEEE
Q psy11701        513 IPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLE-------RLPYISDPTTTSAKLAGLEPSTKYRIHLAGY  585 (745)
Q Consensus       513 ~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~  585 (745)
                      . ...+++.|+|++|...++.+.+|.|+|+..+...|.....       ..........+.+.|.+|.|++.|.|+|+|.
T Consensus       209 ~-~~~~~l~lsW~~P~~~~~~~l~Yev~y~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qVra~  287 (314)
T 3bpo_C          209 S-FHNDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVK  287 (314)
T ss_dssp             E-EETTEEEEEEECCTTCCGGGEEEEEEEEC--CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEEEEE
T ss_pred             E-EcCCcEEEEEeCCCccCCceEEEEEEEEECCCCcceEEecccccccccccccccCCceEEEEccCCCCCEEEEEEEee
Confidence            7 6778999999999765556899999999876554422110       0000002356789999999999999999999


Q ss_pred             ecC----CCCCCcceee
Q psy11701        586 TKA----GDGAESKYLF  598 (745)
Q Consensus       586 n~~----G~g~~S~~~~  598 (745)
                      +..    +.|.+|+++.
T Consensus       288 ~~~~~~~~~g~WS~WS~  304 (314)
T 3bpo_C          288 TNKLCYEDDKLWSNWSQ  304 (314)
T ss_dssp             ECTTTSCCCCCCCCCCC
T ss_pred             ecccccCCCCeeCCCCC
Confidence            862    3455555543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.74  E-value=1.8e-17  Score=158.82  Aligned_cols=165  Identities=22%  Similarity=0.295  Sum_probs=117.7

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc------------CCCCCCceee-----cCceEEEccCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS------------QAPPNPRRKV-----GPNRITIENLR  188 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~------------~~~~~~~~~~-----~~~~L~i~~v~  188 (745)
                      +...|....+.+|++++|.|. .+.|.+.+.|+|+  +..+.            ......++..     ....|.|.+++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            455678888999999999999 7778899999995  21110            0011122222     23579999999


Q ss_pred             CCCCEEEEEEEEeCCceE-----EEEEEEEEeecCC-----------eeeeCCCceEEecCceEEEEEEEeecCCCeEEE
Q psy11701        189 KSDTGNYGCNATNSLGYV-----YKDVYVNVLAHAP-----------EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNW  252 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~~-----~~~~~l~v~~~~p-----------~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W  252 (745)
                      .+|+|.|+|.+.|..|..     .....|.|...++           .+...|....+.+|++++|.|.+.+.|.+.+.|
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W  161 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW  161 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence            999999999999875521     1234666665443           566667778899999999999999998899999


Q ss_pred             eeCCE-----Ec----------cCceEEEee-----cCcEEEcccCCCCCEEEEEEEEeCC
Q psy11701        253 IHNQK-----EL----------TGGRYTILE-----TGDLKITDVAFADSGEYTCFARNKL  293 (745)
Q Consensus       253 ~~~~~-----~~----------~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~n~~  293 (745)
                      ++++.     .+          ...++....     ...|.|.+++.+|+|.|+|.|.|..
T Consensus       162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            99631     11          123444432     2479999999999999999999874

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.74  E-value=1.4e-17  Score=161.71  Aligned_cols=170  Identities=18%  Similarity=0.205  Sum_probs=119.4

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecC------CCeeEEEEC--CEecC------------CCCCeEecc--CCcEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTP------LPQTIWSKD--GVPIN------------PSDRISQGN--YGKSLI   90 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p------~~~v~W~~~--~~~i~------------~~~~~~~~~--~~~~L~   90 (745)
                      ...+...|..+.+.+|++++|.|.+.+.+      .+.+.|+|+  +..+.            ...|+....  ...+|+
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            34556678889999999999999998877      678999984  32211            135655432  234899


Q ss_pred             EccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecC------------------eE-EecCceeEeeCCCeEEEEEEEee
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP------------------YF-TVEPEFINAAEEETVTFECKASG  151 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p------------------~~-~~~~~~~~v~~G~~~~l~C~~~~  151 (745)
                      |.+++.+|+|.|.|.+.+..+......+.|.|..+|                  .+ ...+....+.+|++++|.|.+.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  164 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG  164 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence            999999999999999987654333334567777653                  22 22334457899999999999988


Q ss_pred             cCC--CeEEEEeCC--Ee---cc---CCC--------CCCceee------cCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        152 LPE--PEIHWVHNG--KP---IS---QAP--------PNPRRKV------GPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       152 ~p~--~~v~W~~~g--~~---~~---~~~--------~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .+.  +.+.|+|+.  ..   +.   ...        ...+...      ....|.|.+++.+|+|.|+|.+.|.
T Consensus       165 ~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          165 YSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             SCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            664  799999963  21   11   000        0112221      2358999999999999999999985

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.74  E-value=1.8e-17  Score=163.49  Aligned_cols=169  Identities=15%  Similarity=0.171  Sum_probs=118.4

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--EecC-----------------CCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VPIN-----------------PSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~i~-----------------~~~~~~~~~----~~~~L~   90 (745)
                      ++..|....+.+|++++|.|.+.+.+  .+.+.|+|++  ..+.                 ...|+.+..    ...+|+
T Consensus        25 ~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  104 (291)
T 2gki_A           25 QLQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYME  104 (291)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEE
T ss_pred             EEEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEE
Confidence            44567788999999999999998776  5789999952  2110                 023443321    235899


Q ss_pred             EccCCCCCCEEEEEEEEeCC-e---eeEEEEEEEEEEe----------------cCeEEecCceeEeeCCCeEEEEEEEe
Q psy11701         91 IKHVEFSDQGSYTCEVSNGV-G---EAKSYSIDLSVLA----------------APYFTVEPEFINAAEEETVTFECKAS  150 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~-g---~~~~~~~~l~V~~----------------~p~~~~~~~~~~v~~G~~~~l~C~~~  150 (745)
                      |.+++.+|+|.|+|.+.+.. |   ......+.|.|..                ++.+...|....+.+|++++|.|.+.
T Consensus       105 I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  184 (291)
T 2gki_A          105 LSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSS  184 (291)
T ss_dssp             ECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEES
T ss_pred             ECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcC
Confidence            99999999999999998764 1   1111234677765                34455567778899999999999998


Q ss_pred             ecCCC------eEEEEeCC--Eec---cCC------CCCCceee----cCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        151 GLPEP------EIHWVHNG--KPI---SQA------PPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       151 ~~p~~------~v~W~~~g--~~~---~~~------~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +.+.+      .+.|+|++  ..+   ...      ....++..    ....|.|.+++.+|+|.|+|.+.+...
T Consensus       185 ~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~  259 (291)
T 2gki_A          185 QSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHM  259 (291)
T ss_dssp             SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCc
Confidence            87765      89999962  211   100      01122221    234799999999999999999998653

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.73  E-value=2.8e-18  Score=162.84  Aligned_cols=174  Identities=13%  Similarity=0.219  Sum_probs=118.9

Q ss_pred             cccCCCCCeeEeeccceeEecCCcEEEEEEEeec-CC-C-eeEEEECCEec-CCCCCeE-eccCC-----cEEEEccCCC
Q psy11701         27 SQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGT-PL-P-QTIWSKDGVPI-NPSDRIS-QGNYG-----KSLIIKHVEF   96 (745)
Q Consensus        27 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-~-~v~W~~~~~~i-~~~~~~~-~~~~~-----~~L~i~~~~~   96 (745)
                      +....+|..++..|....+.+|++++|.|.+.|. |. + .|.|+++|+.+ ....... ....+     ..|.|.+++.
T Consensus         7 ~~~~~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~   86 (231)
T 2w59_A            7 AQSCSPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDW   86 (231)
T ss_dssp             -----CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHH
T ss_pred             CCCCCCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhc
Confidence            3445567777788888888999999999999885 64 4 99999999887 4322222 11222     3699999999


Q ss_pred             CCCEEEEEEEEeCCeeeEEEEEEEEEE------ecCeEEecC-ceeEeeCCCeEEEEEEEeec-C-CCeEEEEeCCEecc
Q psy11701         97 SDQGSYTCEVSNGVGEAKSYSIDLSVL------AAPYFTVEP-EFINAAEEETVTFECKASGL-P-EPEIHWVHNGKPIS  167 (745)
Q Consensus        97 ~d~G~Y~C~~~~~~g~~~~~~~~l~V~------~~p~~~~~~-~~~~v~~G~~~~l~C~~~~~-p-~~~v~W~~~g~~~~  167 (745)
                      +|.|.|+|.+.+..+...   +.+.|.      .+|.+.+.+ .... ..|+.++|.|.+.|. | .+.|+|+|||+.+.
T Consensus        87 ~D~g~Y~C~~~~~~~~~~---~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  162 (231)
T 2w59_A           87 LSGERFTCTVQHEELPLP---LSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVP  162 (231)
T ss_dssp             HTTCCEEEEEECTTCSSC---EEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             cCCCEEEEEEEcCCCCCc---eEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECC
Confidence            999999999998765422   233332      456554433 2222 345689999999984 4 36999999999986


Q ss_pred             CCCCC-C-cee---------------ecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        168 QAPPN-P-RRK---------------VGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       168 ~~~~~-~-~~~---------------~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      ..... . ...               ...+.|.|.....+|.|.|+|.|.|...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l  216 (231)
T 2w59_A          163 ATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL  216 (231)
T ss_dssp             GGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence            43210 0 011               1124578888888889999999998764

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.73  E-value=1.3e-17  Score=158.30  Aligned_cols=172  Identities=17%  Similarity=0.257  Sum_probs=117.2

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCC----CeeEEEEC--CEecC----------------CCCCeEecc----CCcEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPL----PQTIWSKD--GVPIN----------------PSDRISQGN----YGKSLI   90 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~----~~v~W~~~--~~~i~----------------~~~~~~~~~----~~~~L~   90 (745)
                      +..|....+.+|++++|.|.+.+.|.    +.+.|+|+  +..+.                ...|+.+..    ...+|.
T Consensus         4 v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (228)
T 3bae_H            4 LKESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMK   83 (228)
T ss_dssp             EEEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEE
T ss_pred             EeCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEE
Confidence            45577788999999999999998764    79999984  22210                123555432    235899


Q ss_pred             EccCCCCCCEEEEEEEEeCCe------e--eEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CCC-e
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVG------E--AKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PEP-E  156 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g------~--~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~  156 (745)
                      |.+++.+|+|.|.|.+.+..|      .  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~  163 (228)
T 3bae_H           84 ITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVT  163 (228)
T ss_dssp             ECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCE
T ss_pred             EcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEE
Confidence            999999999999999988653      2  111236777763    5666554434456789999999999885 777 9


Q ss_pred             EEEEeCCEeccCCCCCC----ceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        157 IHWVHNGKPISQAPPNP----RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       157 v~W~~~g~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      +.|++++..+.......    ......+.|.|.++..+| |.|+|.|.|..+.....
T Consensus       164 v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          164 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             EEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            99999987542110000    011123468999988866 99999999998865543

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.73  E-value=3.7e-17  Score=159.39  Aligned_cols=169  Identities=20%  Similarity=0.184  Sum_probs=115.5

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecC-----CCeeEEEECC--Eec---C---------CCCCeEecc--CCcEEEEc
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTP-----LPQTIWSKDG--VPI---N---------PSDRISQGN--YGKSLIIK   92 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p-----~~~v~W~~~~--~~i---~---------~~~~~~~~~--~~~~L~i~   92 (745)
                      ..+...|..+.+.+|++++|.|.+.+.+     .+.+.|+|++  ..+   .         ...|+....  ...+|+|.
T Consensus        16 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   95 (268)
T 1x9q_A           16 VVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKIN   95 (268)
T ss_dssp             CCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             ceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEEC
Confidence            4456678889999999999999998876     4799999852  211   0         134555432  23489999


Q ss_pred             cCCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCe-----------------------EEecCceeEeeCCCeEEEEEEE
Q psy11701         93 HVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY-----------------------FTVEPEFINAAEEETVTFECKA  149 (745)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~-----------------------~~~~~~~~~v~~G~~~~l~C~~  149 (745)
                      +++.+|+|.|+|.+.+..+........|.|..++.                       ....+....+.+|++++|.|.+
T Consensus        96 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~  175 (268)
T 1x9q_A           96 RVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVT  175 (268)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEE
T ss_pred             CCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEe
Confidence            99999999999999876443222334566654321                       2334556788999999999999


Q ss_pred             eecCC--CeEEEEeC--CEecc----------------CCCCCCceeec------CceEEEccCCCCCCEEEEEEEEeC
Q psy11701        150 SGLPE--PEIHWVHN--GKPIS----------------QAPPNPRRKVG------PNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       150 ~~~p~--~~v~W~~~--g~~~~----------------~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .+.+.  +.+.|+|+  +..+.                ......++...      ...|.|.+++.+|+|.|+|.+.+.
T Consensus       176 ~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          176 SGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             ESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            88653  78999985  22210                00112233221      257999999999999999999874

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.73  E-value=7.5e-18  Score=156.17  Aligned_cols=153  Identities=24%  Similarity=0.435  Sum_probs=108.5

Q ss_pred             eeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        137 AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       137 v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      +.+|++++|.|.+   |.+.+.|+|+|..+...      ...++.|.|.+++.+|+|.|+|.+.+....   .+.|.+..
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~---~~~v~v~~   82 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL------TEDKKKWNLGSNAKDPRGMYQCKGSQNKSK---PLQVYYRM   82 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE------ESSCCCEEEEEGGGCCEEEEEEESSSSCCC---CEEEEEEC
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC------CCCCCeEEeCCCCcCCCEEEEEEecCCCCe---eEEEEEEE
Confidence            3689999999998   77899999999988632      123568999999999999999997553221   13333320


Q ss_pred             ------------------------------cCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCc---e
Q psy11701        217 ------------------------------HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---R  263 (745)
Q Consensus       217 ------------------------------~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~  263 (745)
                                                    .++.+...| .....+|++++|.|.  +.|.+.+.|++++..+...   .
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~  159 (204)
T 1sy6_A           83 GSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDK  159 (204)
T ss_dssp             ------------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCT
T ss_pred             eccccccccccccccccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCc
Confidence                                          012222222 222338999999999  7788899999999887532   2


Q ss_pred             EEEeecCcEEEccc-CCCCCEEEEEEEEeCCceE-EEEEEEEE
Q psy11701        264 YTILETGDLKITDV-AFADSGEYTCFARNKLGTA-QGSGSLTV  304 (745)
Q Consensus       264 ~~~~~~~~l~i~~~-~~~d~G~Y~C~~~n~~g~~-~~~~~l~v  304 (745)
                      ......+.|.|.++ +.+|+|.|+|.|.|..|.. +....|.+
T Consensus       160 ~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          160 NIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             TEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             eEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            22234778999999 9999999999999998862 34444443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.73  E-value=2.2e-17  Score=159.26  Aligned_cols=172  Identities=16%  Similarity=0.225  Sum_probs=116.4

Q ss_pred             cCceeEeeCCCeEEEEEEEeecCCCe-----EEEEeCCEeccCC--------------CCCCce-----eecCceEEEcc
Q psy11701        131 EPEFINAAEEETVTFECKASGLPEPE-----IHWVHNGKPISQA--------------PPNPRR-----KVGPNRITIEN  186 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p~~~-----v~W~~~g~~~~~~--------------~~~~~~-----~~~~~~L~i~~  186 (745)
                      .|....+.+|++++|.|.+.+.|.+.     +.|+|++......              ....+.     ...+.+|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            35566889999999999999877765     9999964321100              000000     11244699999


Q ss_pred             CCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEee-cCCC-eEEEeeCCEEccCc--
Q psy11701        187 LRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGG--  262 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~--  262 (745)
                      ++.+|+|.|+|.+.+..+.....+.|.|.. +|.+...+.. .+..|+.++|.|.+.+ .|.+ .+.|++++..+...  
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~-~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~  166 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVA-SPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE  166 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEB-CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEec-CCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence            999999999999999988877888888875 7777666553 3456788889999998 7888 99999988543211  


Q ss_pred             --------eEEEee------cCcEEEcccCCCCCEEEEEEEEeCCce--EEEEEEEEE
Q psy11701        263 --------RYTILE------TGDLKITDVAFADSGEYTCFARNKLGT--AQGSGSLTV  304 (745)
Q Consensus       263 --------~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~n~~g~--~~~~~~l~v  304 (745)
                              ......      ...|.|.....+|.|.|+|.|.|..+.  ....+.|.|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence                    111111      235788888889999999999998876  455666666

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.73  E-value=2e-16  Score=162.69  Aligned_cols=193  Identities=14%  Similarity=0.119  Sum_probs=130.3

Q ss_pred             CCCCCCceeEEEcCCceEEEEeeCCCCCC--C-ceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEE
Q psy11701        503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPN--G-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR  579 (745)
Q Consensus       503 ~P~~p~~~~~~~~~~~~i~l~W~~p~~~~--g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~  579 (745)
                      +|++|.++.+.....++++++|+++.+.+  | ..+.|.|.|+..+...  ....  .....+....+.+.+|.+.+.|.
T Consensus       281 PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y~~~g~~~--~C~~--~~~~~~~~~~C~~~~l~~~t~Y~  356 (483)
T 3e0g_A          281 PPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYV--RLKR--AEAPTNESYQLLFQMLPNQEIYN  356 (483)
T ss_dssp             CCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEETTTCCEE--EECC--CSSCSCSCEEEEEECCTTCCCEE
T ss_pred             CCCCCCccEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEEEECCCCc--cccC--CcccCCCEEEEEEccCCCCcEEE
Confidence            57889999998888889999999987653  4 3899999997543221  1110  00001234578899999999999


Q ss_pred             EEEEEEecCCCCCCcceeeeccc----CCCCCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCc
Q psy11701        580 IHLAGYTKAGDGAESKYLFYVPF----KNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDV  655 (745)
Q Consensus       580 ~~V~a~n~~G~g~~S~~~~~~~~----~~~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~  655 (745)
                      |+|.|.|..|.+... .......    .+|..+.+....++.+.|+|++|.  ..++.+..|.|+|++.+...++....+
T Consensus       357 f~V~A~N~lG~~~S~-~~~~~~~~VkP~PP~nl~v~~~~stsl~LsW~~P~--~~~~~~L~YeVrYr~~~~~~~~~~vsv  433 (483)
T 3e0g_A          357 FTLNAHNPLGRSQST-ILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPG--NFAKINFLCEIEIKKSNSVQEQRNVTI  433 (483)
T ss_dssp             EEEEEECSSCEEEEE-EEECGGGGBCCCCCEEEEECCSSSSSCCEEEECCS--CCTTSBCCCEEEEECSSSCCCEEECCC
T ss_pred             EEEEEEeCCCCcccc-eEEEeccccCCCCCeeeEEEEecCCeEEEEECCCC--CCCCceEEEEEEEEECCCCCceEEEEE
Confidence            999999999988743 2221111    122223333446788999999775  345677899999987633211100000


Q ss_pred             cccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCccc---CCCCc
Q psy11701        656 LDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYN---GPPSE  732 (745)
Q Consensus       656 ~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~---g~~s~  732 (745)
                                .+                             ......++.|.+|.|++.|.|+|+|. ..|.   |+||+
T Consensus       434 ----------~~-----------------------------~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~  473 (483)
T 3e0g_A          434 ----------QG-----------------------------VENSSYLVALDKLNPYTLYTFRIRCS-TETFWKWSKWSN  473 (483)
T ss_dssp             ----------BC-----------------------------CSSSBCCCCCCSCCSSSSCEEEEECC-CSSCCCCCCCCC
T ss_pred             ----------ec-----------------------------cCCceeEEEEeccCCCcEEEEEEEEe-eCCCCCcCCCCC
Confidence                      00                             00123357889999999999999999 6776   88999


Q ss_pred             ceEEeCCCCC
Q psy11701        733 IISFVTPEGG  742 (745)
Q Consensus       733 ~~~~~t~~~~  742 (745)
                      ++.|+|+|+.
T Consensus       474 ~~~f~T~E~~  483 (483)
T 3e0g_A          474 KKQHLTTEAS  483 (483)
T ss_dssp             CCCCCCCCCC
T ss_pred             ceeeECCCCC
Confidence            9999998863

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.73  E-value=9.7e-18  Score=157.12  Aligned_cols=164  Identities=20%  Similarity=0.337  Sum_probs=117.5

Q ss_pred             CceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc---------CCCCCCceee----cCceEEEccCCCCCCEEEE
Q psy11701        132 PEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS---------QAPPNPRRKV----GPNRITIENLRKSDTGNYG  196 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~---------~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~  196 (745)
                      |....+.+|++++|.|.+.+.|.+.+.|+|+  |..+.         ......++..    ....|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            7888899999999999999988889999984  22210         0011123322    2348999999999999999


Q ss_pred             EEEEeCCceEEE-EEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-eEEEeeCCEEccCc-eEEE----
Q psy11701        197 CNATNSLGYVYK-DVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNWIHNQKELTGG-RYTI----  266 (745)
Q Consensus       197 C~~~~~~g~~~~-~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~-~~~~----  266 (745)
                      |.+.|..+.... ...|.|..  .+|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++..+... ....    
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  166 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQD  166 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCcc
Confidence            999987764332 23556643  35666654444444579999999999874 443 89999999987655 1111    


Q ss_pred             eec------CcEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        267 LET------GDLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       267 ~~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      ..+      ..|.|.++..+|+|.|+|.|.|....
T Consensus       167 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          167 SKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            111      25899999999999999999997653

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.73  E-value=3e-17  Score=159.08  Aligned_cols=166  Identities=20%  Similarity=0.281  Sum_probs=112.9

Q ss_pred             eeccceeEecCCcEEEEEEEeec--CCCeeEEEECC--EecC------------CCCCeEeccC--CcEEEEccCCCCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDG--VPIN------------PSDRISQGNY--GKSLIIKHVEFSDQ   99 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~--~~i~------------~~~~~~~~~~--~~~L~i~~~~~~d~   99 (745)
                      ..|....+.+|++++|.|.+.+.  +.+.+.|+|++  ..+.            ...|+.....  ..+|.|.+++.+|+
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B            7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE   86 (256)
T ss_dssp             BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence            44556789999999999999877  77899999842  1110            1245554322  23799999999999


Q ss_pred             EEEEEEEEeCCee--eEEEEEEEEEEecCe--------------------EEecCceeEeeCCCeEEEEEEEeecC--CC
Q psy11701        100 GSYTCEVSNGVGE--AKSYSIDLSVLAAPY--------------------FTVEPEFINAAEEETVTFECKASGLP--EP  155 (745)
Q Consensus       100 G~Y~C~~~~~~g~--~~~~~~~l~V~~~p~--------------------~~~~~~~~~v~~G~~~~l~C~~~~~p--~~  155 (745)
                      |.|+|.+.+..+.  .....+.|.|..++.                    ....+....+.+|++++|.|.+.+.+  .+
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  166 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSY  166 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccccc
Confidence            9999999986432  222345677766541                    22333445689999999999998866  67


Q ss_pred             eEEEEeC--CEecc------CC--------CCCCceee------cCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        156 EIHWVHN--GKPIS------QA--------PPNPRRKV------GPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       156 ~v~W~~~--g~~~~------~~--------~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .+.|+|+  +..+.      ..        ....++..      ....|.|.+++.+|+|.|+|.+.|..
T Consensus       167 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          167 AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            9999996  32221      00        01112221      12359999999999999999999864

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.73  E-value=1.1e-16  Score=151.90  Aligned_cols=174  Identities=16%  Similarity=0.199  Sum_probs=119.3

Q ss_pred             CceeEeeCCCeEEEEEEEeecCCC---eEEEEeCCEeccC-------------CCCC-----------CceeecCceEEE
Q psy11701        132 PEFINAAEEETVTFECKASGLPEP---EIHWVHNGKPISQ-------------APPN-----------PRRKVGPNRITI  184 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~~---~v~W~~~g~~~~~-------------~~~~-----------~~~~~~~~~L~i  184 (745)
                      |....+..|++++|.|.+.+.+.+   .++|+|++..+..             ....           ......+.+|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            445678899999999999886665   4899997644310             0000           011123467999


Q ss_pred             ccCCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEE-eecCCCeEEEeeCCEEccCce
Q psy11701        185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELTGGR  263 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~  263 (745)
                      .+++.+|+|.|+|.+.+..+.........+...+|.+...+.......++.+.+.|.+ .+.|.+.+.|++++..+....
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~  167 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT  167 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCc
Confidence            9999999999999999887765555443444446666655556666677777777775 456788999999876543222


Q ss_pred             EE-Eeec------CcEEEcccCCCCCEEEEEEEEeCCceE--EEEEEEEEe
Q psy11701        264 YT-ILET------GDLKITDVAFADSGEYTCFARNKLGTA--QGSGSLTVK  305 (745)
Q Consensus       264 ~~-~~~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~~--~~~~~l~v~  305 (745)
                      .. ...+      +.|.|.++..+|+|.|+|.|.|..+..  ...+.|.|.
T Consensus       168 ~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~  218 (225)
T 4fmk_A          168 QEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVR  218 (225)
T ss_dssp             EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBT
T ss_pred             ceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEE
Confidence            11 1122      259999999999999999999987764  344444443

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=2.4e-17  Score=159.57  Aligned_cols=177  Identities=20%  Similarity=0.312  Sum_probs=121.4

Q ss_pred             CceeEeeCCCeEEEEEEEeecC--CCeEEEEeC--CEecc-------------CCCCCCceee------cCceEEEccCC
Q psy11701        132 PEFINAAEEETVTFECKASGLP--EPEIHWVHN--GKPIS-------------QAPPNPRRKV------GPNRITIENLR  188 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--g~~~~-------------~~~~~~~~~~------~~~~L~i~~v~  188 (745)
                      |....+.+|++++|.|.+.+.|  .+.+.|+|+  +..+.             ......++..      ....|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ   86 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            4455789999999999999875  679999985  22110             0001223332      12489999999


Q ss_pred             CCCCEEEEEEEEeCCc-------eEE--EEEEEEEeecC--------------CeeeeCCCceEEecCceEEEEEEEeec
Q psy11701        189 KSDTGNYGCNATNSLG-------YVY--KDVYVNVLAHA--------------PEITEAPKDEYTVDGKTVVLTCRVFGA  245 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g-------~~~--~~~~l~v~~~~--------------p~~~~~~~~~~v~~g~~~~l~C~~~~~  245 (745)
                      .+|+|.|+|.+.|..|       ...  ....|.|...+              +.+...+....+.+|++++|.|.+.+.
T Consensus        87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  166 (257)
T 1f3r_B           87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN  166 (257)
T ss_dssp             TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred             cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence            9999999999998853       111  23567776432              234445666778899999999999988


Q ss_pred             CCCeEEEee--CCEEcc-------------CceEEEee---cCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeec
Q psy11701        246 PKPEVNWIH--NQKELT-------------GGRYTILE---TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH  307 (745)
Q Consensus       246 p~~~i~W~~--~~~~~~-------------~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~  307 (745)
                      +.+.+.|++  ++..+.             ..++....   ...|.|.+++.+|+|.|.|.|.|..........|.|...
T Consensus       167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~  246 (257)
T 1f3r_B          167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAA  246 (257)
T ss_dssp             CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSS
T ss_pred             CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeCC
Confidence            888999999  444321             23444322   236999999999999999999986512223345655544


Q ss_pred             c
Q psy11701        308 T  308 (745)
Q Consensus       308 p  308 (745)
                      +
T Consensus       247 ~  247 (257)
T 1f3r_B          247 E  247 (257)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.72  E-value=1.4e-17  Score=157.72  Aligned_cols=176  Identities=24%  Similarity=0.398  Sum_probs=120.7

Q ss_pred             eeEeeCCCeEEEEEEEeecCC-----CeEEEEeCCEeccC----------CCCCCceee-------cCceEEEccCCCCC
Q psy11701        134 FINAAEEETVTFECKASGLPE-----PEIHWVHNGKPISQ----------APPNPRRKV-------GPNRITIENLRKSD  191 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~~p~-----~~v~W~~~g~~~~~----------~~~~~~~~~-------~~~~L~i~~v~~~d  191 (745)
                      ...+.+|++++|.|.+.+.+.     +.+.|++++.....          .....+...       ++..|.|.+++.+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            456789999999999987654     68999998743310          011122222       25689999999999


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEeec--CCeeeeCCCceEEecCceEEEEEEE-eecCCCeEEEeeC-CEEccCce-EEE
Q psy11701        192 TGNYGCNATNSLGYVYKDVYVNVLAH--APEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHN-QKELTGGR-YTI  266 (745)
Q Consensus       192 ~G~Y~C~~~~~~g~~~~~~~l~v~~~--~p~~~~~~~~~~v~~g~~~~l~C~~-~~~p~~~i~W~~~-~~~~~~~~-~~~  266 (745)
                      +|.|+|.+.+. +.....+.|.|...  +|.+...+ ...+.+|+.++|.|.+ .+.|.+.+.|+++ +..+.... ...
T Consensus        84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~  161 (222)
T 4i0k_A           84 EGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQ  161 (222)
T ss_dssp             CSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEE
T ss_pred             CEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeE
Confidence            99999999986 33344455555532  34555444 3467789999999999 7889999999994 44443321 111


Q ss_pred             --eecCc---EEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecceee
Q psy11701        267 --LETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT  311 (745)
Q Consensus       267 --~~~~~---l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~~  311 (745)
                        ..++.   |.|.++..+|.|.|+|.|.|..|.....+.|.|..+|...
T Consensus       162 ~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  211 (222)
T 4i0k_A          162 MANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTF  211 (222)
T ss_dssp             EECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-----
T ss_pred             EcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcccc
Confidence              12222   7899999999999999999999999999999998877543

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.72  E-value=4.7e-18  Score=161.61  Aligned_cols=174  Identities=15%  Similarity=0.208  Sum_probs=117.0

Q ss_pred             CCCCeeEeecccee-EecCCcEEEEEEEeec---CCC-eeEEEECCEecCCCC---CeEecc----CCcEEEEccCCCCC
Q psy11701         31 HAPKQQYVTRKKEV-ALRNKKVELFCIFGGT---PLP-QTIWSKDGVPINPSD---RISQGN----YGKSLIIKHVEFSD   98 (745)
Q Consensus        31 ~~p~~~~~~~~~~~-v~~G~~~~l~C~~~g~---p~~-~v~W~~~~~~i~~~~---~~~~~~----~~~~L~i~~~~~~d   98 (745)
                      .+|..++.++.... +.+|++++|.|.+.|.   |.+ .|.|+|++..+....   ...+..    ....|.|.+++.+|
T Consensus        14 ~~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D   93 (239)
T 1i1c_A           14 EVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLN   93 (239)
T ss_dssp             ---CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHT
T ss_pred             cCCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccC
Confidence            56676666565555 8899999999999887   766 999999887664321   011111    12379999999999


Q ss_pred             CEEEEEEEEeCCeee-EEEEEEE--EEEecCeEEecCceeEeeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCC
Q psy11701         99 QGSYTCEVSNGVGEA-KSYSIDL--SVLAAPYFTVEPEFINAAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNP  173 (745)
Q Consensus        99 ~G~Y~C~~~~~~g~~-~~~~~~l--~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~  173 (745)
                      +|.|+|.+.+..+.. ....+.+  .+..+|.+.+.+.......|+.++|.|.+.| .|. ..++|+|||+.+.......
T Consensus        94 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  173 (239)
T 1i1c_A           94 GKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTP  173 (239)
T ss_dssp             TCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECC
T ss_pred             CCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecC
Confidence            999999999877643 2233333  4556777766655433346899999999998 455 4899999999886422111


Q ss_pred             ceeecCce------EEEccCCCCCCEEEEEEEEeCCc
Q psy11701        174 RRKVGPNR------ITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       174 ~~~~~~~~------L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      .....+++      |.|.....+|.|.|+|.|.|...
T Consensus       174 ~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          174 PTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence            11223333      44444444579999999998764

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.72  E-value=6.8e-17  Score=153.46  Aligned_cols=179  Identities=18%  Similarity=0.230  Sum_probs=117.4

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Ee---c-------------CCCCCeEecc----CCcEEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VP---I-------------NPSDRISQGN----YGKSLII   91 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~---i-------------~~~~~~~~~~----~~~~L~i   91 (745)
                      .+.+|....+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +             ....|+.+..    ...+|+|
T Consensus         3 ~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   82 (232)
T 1dn0_B            3 QLQQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKL   82 (232)
T ss_dssp             EEEEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             eEECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEE
Confidence            34566778899999999999998765  5689999842  21   1             0135665532    1238999


Q ss_pred             ccCCCCCCEEEEEEEEe--CCee---eEEEEEEEEEEe----cCeEEecCceeEeeCC-CeEEEEEEEeec-CCC-eEEE
Q psy11701         92 KHVEFSDQGSYTCEVSN--GVGE---AKSYSIDLSVLA----APYFTVEPEFINAAEE-ETVTFECKASGL-PEP-EIHW  159 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~--~~g~---~~~~~~~l~V~~----~p~~~~~~~~~~v~~G-~~~~l~C~~~~~-p~~-~v~W  159 (745)
                      .+++.+|+|.|.|.+.+  ..+.   .....+.|.|..    +|.+........+.+| +.++|.|.+.+. |.+ .+.|
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W  162 (232)
T 1dn0_B           83 SSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSW  162 (232)
T ss_dssp             CSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEE
T ss_pred             CCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEE
Confidence            99999999999999983  2111   122335677764    3554433222235578 999999999885 776 9999


Q ss_pred             Ee-CCEeccCCCCCC-----ceeecCceEEEccCCC--CCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        160 VH-NGKPISQAPPNP-----RRKVGPNRITIENLRK--SDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       160 ~~-~g~~~~~~~~~~-----~~~~~~~~L~i~~v~~--~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      ++ +|..+.......     ......+.|.|.+...  +|.|.|+|.|.|..+.......+.+
T Consensus       163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~  225 (232)
T 1dn0_B          163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV  225 (232)
T ss_dssp             EETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred             EcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence            99 998875310000     1111235688988887  8899999999999887655554443

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.72  E-value=1.4e-17  Score=156.12  Aligned_cols=169  Identities=18%  Similarity=0.282  Sum_probs=120.9

Q ss_pred             EecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc---C------CCCCCcee----ecCceEEEccCCCCCCE
Q psy11701        129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS---Q------APPNPRRK----VGPNRITIENLRKSDTG  193 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~---~------~~~~~~~~----~~~~~L~i~~v~~~d~G  193 (745)
                      ...+ ...+.+|++++|.|.+.  +.+.+.|+|+  +..+.   .      .....++.    .....|.|.+++.+|+|
T Consensus         5 ~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   81 (211)
T 3tv3_L            5 TQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEA   81 (211)
T ss_dssp             BCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             EeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCE
Confidence            3344 77899999999999999  8889999994  22211   0      00112222    12357999999999999


Q ss_pred             EEEEEEEeCCc--eEEEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeecC--CCeEEEeeCCEEccCceEE-
Q psy11701        194 NYGCNATNSLG--YVYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGAP--KPEVNWIHNQKELTGGRYT-  265 (745)
Q Consensus       194 ~Y~C~~~~~~g--~~~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~~-  265 (745)
                      .|+|.+.+..+  .....+.|.|..   .+|.+...+....+..|+.++|.|.+.+.+  .+.+.|++++..+...... 
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  161 (211)
T 3tv3_L           82 VYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETT  161 (211)
T ss_dssp             EEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC
T ss_pred             EEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccC
Confidence            99999999887  233446777763   466776666555555799999999998863  4789999999887542111 


Q ss_pred             ---Eee------cCcEEEcccCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        266 ---ILE------TGDLKITDVAFADSGEYTCFARNKLGTAQGSG  300 (745)
Q Consensus       266 ---~~~------~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~  300 (745)
                         ...      ...|.|..+..+|.|.|+|.|.|..+.....+
T Consensus       162 ~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          162 TPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             CCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             CceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence               111      13588999988899999999999987665443

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.72  E-value=7.4e-17  Score=158.50  Aligned_cols=244  Identities=15%  Similarity=0.116  Sum_probs=149.9

Q ss_pred             ecCCeEEEEEEEEecCCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        320 EAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ  399 (745)
Q Consensus       320 ~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~  399 (745)
                      ..|++++|.|.+.. +   ..|.|.+++.....        ..+++|.|..+...|.|.|+|.+   .|.....+.+.|.
T Consensus        19 ~~G~~v~l~C~~~~-~---~~i~W~~~~~~~~~--------~~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~v~   83 (306)
T 3d85_D           19 APGEMVVLTCDTPE-E---DGITWTLDQSSEVL--------GSGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLH   83 (306)
T ss_dssp             CCCEEEEEECSSSC-C---SSCEEEETTCCCCC--------EESSEEEEEECSGGGCEEEEEEE---TTEEEEEEEEEEE
T ss_pred             ccCCcEEEECCCCC-C---CcCEEEECCccccC--------CCCCEEEEEecCcCCCceEEEee---CCcccceEEEEEE
Confidence            47999999998873 2   26889999875321        24568999999989999999999   3666555555554


Q ss_pred             c-------------cCCCC--CCceeEEeecC-ceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeE---------
Q psy11701        400 V-------------PLEAP--SNFTLIQVIDA-KKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRE---------  454 (745)
Q Consensus       400 ~-------------pp~~P--~~~~~~~~~~~-~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~---------  454 (745)
                      .             ++.||  .++.+.. ... ..+++.|.++....   ....|...+... +  ..+..         
T Consensus        84 ~~~~~~~~t~i~~~~~~pp~~~~lsC~~-~~~~~~~~C~W~pg~~~~---l~~~~~~~r~~~-~--~~~~~C~~~~~~~~  156 (306)
T 3d85_D           84 KKEDGIWSTDILKDQKEPKNKTFLRCEA-KNYSGRFTCWWLTTISTD---LTFSVKSSRGSS-D--PQGVTCGAATLSAE  156 (306)
T ss_dssp             EEETTEECCCSSCCCC---CCCCCEEEB-SSSSSEEEEEEEESCCSS---EEEEEEEEECSS-S--CEEEEECCCEEEEE
T ss_pred             eccCCcceeeeecccCCCCCCCcceEEc-CCcccCcEEEecCCCCCc---eeEEEEEEecCC-C--CcceECCCCCCCcc
Confidence            2             12223  3566544 333 38999999965322   223444432111 1  11111         


Q ss_pred             -EEEccCce--eEE--EecccccC----cceeEEEEEecCCCCCCCCcceEEe-CCCCCCCCCCceeEEEcCC-ceEEEE
Q psy11701        455 -LIVNKGES--TTT--EVDKFVPA----SKNFARVLAFNGAYNGPPSEIISFV-TPEGVPGTVQSLEAIPLGS-SAFYLK  523 (745)
Q Consensus       455 -~~~~~~~~--~~~--~i~~L~~~----~~Y~~~V~a~n~~G~g~~S~~~~~~-t~~~~P~~p~~~~~~~~~~-~~i~l~  523 (745)
                       ..+ ....  .++  ....+.+.    ..|.|+|.|.|..|....+  ..+. +....|.||.++.+..... ..+.|+
T Consensus       157 ~c~v-~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~--~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vs  233 (306)
T 3d85_D          157 RVRG-DNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYT--SSFFIRDIIKPDPPKNLQLKPLKNSRQVEVS  233 (306)
T ss_dssp             EEC---CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEE--EEECHHHHBCCCCCEEEEEEEC----CEEEE
T ss_pred             ceee-cCccccceeeeeeccccccccccEEEEEEEEEEccCCccccc--eEEEehhcEecCCCceEEEEEecCCCcEEEE
Confidence             011 0100  111  12233333    4799999999998864332  3332 3346788999999987544 789999


Q ss_pred             eeCCCCCCCc----eeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceee
Q psy11701        524 WVKPEQPNGV----LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF  598 (745)
Q Consensus       524 W~~p~~~~g~----i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~  598 (745)
                      |.+|...+.+    ...|.|+|+..+...+....       ....+++.|   .+++.|+|+|+|.+..|.|.+|+++.
T Consensus       234 W~~P~~~~~p~~~~~L~Y~vryr~~~~~~~~~~~-------~~~~ts~~l---~~~~~Y~vqVRa~~~~~~G~WSeWS~  302 (306)
T 3d85_D          234 WEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRV-------FTDKTSATV---ICRKNASISVRAQDRYYSSSWSEWAS  302 (306)
T ss_dssp             EECCTTSCSCTTTSCEEEEEEEECC------CEE-------EESSSEEEE---CCCSSCEEEEEEEESSSCCCCCCCEE
T ss_pred             EcCCCCCcCCCceeeEEEEEEEEECCCCccEEEe-------eccccEEEE---eCCCeEEEEEEeccCCCCCCCCCCCC
Confidence            9998754433    37999999977654332211       223456766   46999999999999999999998864

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=1e-16  Score=154.51  Aligned_cols=174  Identities=20%  Similarity=0.304  Sum_probs=121.1

Q ss_pred             CceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Eecc--------------CCCCCCceee------cCceEEEccC
Q psy11701        132 PEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KPIS--------------QAPPNPRRKV------GPNRITIENL  187 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~~~--------------~~~~~~~~~~------~~~~L~i~~v  187 (745)
                      |....+.+|++++|.|.+.+.|  .+.+.|+|+.  ..+.              ......++..      ...+|.|.++
T Consensus         9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B            9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            4457889999999999999876  5789999842  1110              0111223322      1247999999


Q ss_pred             CCCCCEEEEEEEEeCCceE--EEEEEEEEeec--------------CCeeeeCCCceEEecCceEEEEEEEeecCCCeEE
Q psy11701        188 RKSDTGNYGCNATNSLGYV--YKDVYVNVLAH--------------APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVN  251 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g~~--~~~~~l~v~~~--------------~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~  251 (745)
                      +.+|+|.|+|.+.|..+..  .....|.|...              ++.+...+....+.+|++++|.|.+.+.+.+.+.
T Consensus        89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~  168 (247)
T 2ghw_B           89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLA  168 (247)
T ss_dssp             CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred             CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEE
Confidence            9999999999999973322  22356777642              3445666777788999999999999999888999


Q ss_pred             Eee--CCEEc-------------cCceEEEee---cCcEEEcccCCCCCEEEEEEEEeCCceE-EEEEEEEEe
Q psy11701        252 WIH--NQKEL-------------TGGRYTILE---TGDLKITDVAFADSGEYTCFARNKLGTA-QGSGSLTVK  305 (745)
Q Consensus       252 W~~--~~~~~-------------~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~  305 (745)
                      |++  ++..+             ...++....   ..+|.|.+++.+|+|.|+|.|.+..... .....|.|.
T Consensus       169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            999  44432             123444322   2359999999999999999998754332 233455554

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.72  E-value=1.4e-16  Score=157.43  Aligned_cols=215  Identities=15%  Similarity=0.141  Sum_probs=144.6

Q ss_pred             ecCCCCCCEEEEEEEEeCCceEEEEEEEEEe----ccCCCCCCceeEEeecCceeEEEEEeCCCCC----cceeeeeEEE
Q psy11701        369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQ----VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQS----LRGHFRGYKV  440 (745)
Q Consensus       369 ~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~----~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~----~~~~i~~y~i  440 (745)
                      ..+.....+.+++.|.| .|.+..+....+.    .+++||. +.+..  ...++.|.|+|+....    .++.+.+|.|
T Consensus        66 ~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~f~~~~~~~~~pP~-v~~~~--~~~si~v~w~P~~~~~~~~~~~g~~l~Y~v  141 (306)
T 3s98_A           66 LKLNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEA--EDKAIVIHISPGTKDSVMWALDGLSFTYSL  141 (306)
T ss_dssp             ---CTTSCEEEEEEEEC-SSCEEEEECCCBCHHHHCBCCCCE-EEEEE--CSSCEEEEEECC---CCCC-----CCEEEE
T ss_pred             cccCCCCcEEEEEEEEe-CCcCCCEeeeeEechhhCccCCCe-EEEEE--cCCEEEEEEECCCCCCcceeccCCcEEEEE
Confidence            34566778899999999 6655443333332    3567774 76654  4468999999543210    1578999999


Q ss_pred             EEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEec--CCCCCCCCcceEEeCCCCCC-CCCCceeEEEcCC
Q psy11701        441 QTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFN--GAYNGPPSEIISFVTPEGVP-GTVQSLEAIPLGS  517 (745)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n--~~G~g~~S~~~~~~t~~~~P-~~p~~~~~~~~~~  517 (745)
                      .||..+.... +. +.   .....++|.+|.+++.|.|+|+|+|  ..|.|++|..+.+.|..+.| .+|.++.+... .
T Consensus       142 ~y~~~~~~~~-~~-~~---~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~~p~~~P~~v~~~~~-~  215 (306)
T 3s98_A          142 VIWKNSSGVE-ER-IE---NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQ-N  215 (306)
T ss_dssp             EEEETTTCCC-EE-EE---EECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSCCSSCCCEEEEEEEE-T
T ss_pred             EEEECCCCCe-EE-Ee---cccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCCCcCCCCceEEEEEe-c
Confidence            9998765432 22 22   2457899999999999999999999  78999999999988877766 57788888664 5


Q ss_pred             ceEEEEeeCCCCCCCceeeEEEEEEE--------cCCcccCCcccccccccCCCcceeeecC-CCCCccEEEEEEEEecC
Q psy11701        518 SAFYLKWVKPEQPNGVLMGYKIKYQS--------VKGTKVGPLLERLPYISDPTTTSAKLAG-LEPSTKYRIHLAGYTKA  588 (745)
Q Consensus       518 ~~i~l~W~~p~~~~g~i~~Y~v~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~p~t~Y~~~V~a~n~~  588 (745)
                      +++.|+|++|...    .+|.++|..        .+...|.+...    -.+...+.+.+.+ |.+...|.|||.|.|..
T Consensus       216 ~s~~l~W~~p~~~----~~~~v~~~~gy~~~~~~~~~~~W~~~~~----c~~~~~~~c~~~~~~~~~~~Y~~RV~A~n~~  287 (306)
T 3s98_A          216 QNYVLKWDYTYAN----MTFQVQWLHAFLKRNPGNHLYKWKQIPD----CENVKTTQCVFPQNVFQKGIYLLRVQASDGN  287 (306)
T ss_dssp             TEEEEEEECSSSS----CEEEEEEEEGGGGSCC----CCCEECGG----GTTBSSSEEEEEGGGSCSSEEEEEEEEECSS
T ss_pred             CEEEEEeCCCCCc----EEEEEEEehhhhhccccccccCceECCC----ceeCCCccccCchhhcccCCEEEEEEEccCC
Confidence            7899999997632    256666653        22223321100    1133456778887 45666999999999999


Q ss_pred             CCCCCcceeeecc
Q psy11701        589 GDGAESKYLFYVP  601 (745)
Q Consensus       589 G~g~~S~~~~~~~  601 (745)
                      |.|.+|+...+.+
T Consensus       288 ~~s~~s~~~~~~~  300 (306)
T 3s98_A          288 NTSFWSEEIKFDT  300 (306)
T ss_dssp             CBCCCCCCEEEEC
T ss_pred             CccccccccccCc
Confidence            9999987765543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.72  E-value=1.5e-16  Score=149.52  Aligned_cols=163  Identities=18%  Similarity=0.274  Sum_probs=114.7

Q ss_pred             EecCceeEeeCCCeEEEEEEEeec-------CCCeEEEEeCCEec------c--------CCCCCCceee------cCce
Q psy11701        129 TVEPEFINAAEEETVTFECKASGL-------PEPEIHWVHNGKPI------S--------QAPPNPRRKV------GPNR  181 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~-------p~~~v~W~~~g~~~------~--------~~~~~~~~~~------~~~~  181 (745)
                      ...|....+.+|++++|.|.+.+.       +.+.+.|+|++...      .        ......+...      .+.+
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s   83 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS   83 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence            344777889999999999999753       46799999987531      0        0111223332      2347


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCceEE----EEEEEEEeec--CCeeeeCCCceEEecCceEEEEEEEeec----CCCeEE
Q psy11701        182 ITIENLRKSDTGNYGCNATNSLGYVY----KDVYVNVLAH--APEITEAPKDEYTVDGKTVVLTCRVFGA----PKPEVN  251 (745)
Q Consensus       182 L~i~~v~~~d~G~Y~C~~~~~~g~~~----~~~~l~v~~~--~p~~~~~~~~~~v~~g~~~~l~C~~~~~----p~~~i~  251 (745)
                      |.|.+++.+|+|.|+|.+.+..+...    ..+.|.|...  +|.+.. +.  .+.+|+.++|.|.+.+.    |.+.+.
T Consensus        84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~  160 (214)
T 2zg1_A           84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFS  160 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred             EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEE
Confidence            99999999999999999998764332    2466777653  344433 22  26689999999999764    778999


Q ss_pred             EeeCCEEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceE
Q psy11701        252 WIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTA  296 (745)
Q Consensus       252 W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~  296 (745)
                      |++++..+.....  ...+.|.|..+..+|.|.|+|.|.|..+..
T Consensus       161 W~~~~~~~~~~~~--~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~  203 (214)
T 2zg1_A          161 WTGNALSPLDPET--TRSSELTLTPRPEDHGTNLTCQMKRQGAQV  203 (214)
T ss_dssp             EESSTTSSSCSSC--CCSSEEEECCCTTCCSCEEEEEEECC----
T ss_pred             EeCCCCccCCCCc--eeEEEEEEecccHHcCcEEEEEEEeCCCCc
Confidence            9999865433221  345679999999999999999999976543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.72  E-value=5.6e-17  Score=152.22  Aligned_cols=170  Identities=19%  Similarity=0.289  Sum_probs=119.3

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecC---CCeEEEEeCC--Eecc---------CCCCCCceee----cCceEEEccCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLP---EPEIHWVHNG--KPIS---------QAPPNPRRKV----GPNRITIENLRK  189 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p---~~~v~W~~~g--~~~~---------~~~~~~~~~~----~~~~L~i~~v~~  189 (745)
                      +.. |....+.+|++++|.|.+.+.|   .+.+.|+|++  ..+.         ......++..    ....|.|.+++.
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   82 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQT   82 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCc
Confidence            344 7788899999999999998876   4789999953  2220         0011223322    234899999999


Q ss_pred             CCCEEEEEEEEeCCceEE-EEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeecCCC--eEEEeeCCEEccCce
Q psy11701        190 SDTGNYGCNATNSLGYVY-KDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP--EVNWIHNQKELTGGR  263 (745)
Q Consensus       190 ~d~G~Y~C~~~~~~g~~~-~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~  263 (745)
                      +|+|.|+|.+.+..+... ....|.|..   .+|.+...+....+..|+.++|.|.+.+.+++  .+.|++++..+....
T Consensus        83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~  162 (212)
T 1q0x_L           83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGM  162 (212)
T ss_dssp             GGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred             cCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCe
Confidence            999999999998776432 234566632   36666655444445579999999999886433  899999998876442


Q ss_pred             EE----Eeec------CcEEEcccCCCCCEEEEEEEEeCCceEEE
Q psy11701        264 YT----ILET------GDLKITDVAFADSGEYTCFARNKLGTAQG  298 (745)
Q Consensus       264 ~~----~~~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~  298 (745)
                      ..    ...+      ..|.|..+..+|.|.|+|.|.|.......
T Consensus       163 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (212)
T 1q0x_L          163 ETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK  207 (212)
T ss_dssp             EECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             ecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceee
Confidence            21    1111      25889999889999999999998765433

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.71  E-value=2.4e-17  Score=159.91  Aligned_cols=166  Identities=17%  Similarity=0.192  Sum_probs=108.5

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC---C----C-----------CCeEe---ccCCcEEEEc
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN---P----S-----------DRISQ---GNYGKSLIIK   92 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~---~----~-----------~~~~~---~~~~~~L~i~   92 (745)
                      +...|..+.+.+|++|+|.|.+.+.+.+.+.|+|.  +..+.   .    .           .++..   .....+|.|.
T Consensus         5 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   84 (259)
T 3omz_A            5 LEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILR   84 (259)
T ss_dssp             ------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEES
T ss_pred             cccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEEC
Confidence            44567788899999999999999888889999982  21110   0    0           11111   1223479999


Q ss_pred             cCCCCCCEEEEEEEEeCCee--eEEEEEEEEEEe-----------------cCeEEecCceeEeeCCCeEEEEEEEeec-
Q psy11701         93 HVEFSDQGSYTCEVSNGVGE--AKSYSIDLSVLA-----------------APYFTVEPEFINAAEEETVTFECKASGL-  152 (745)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~g~--~~~~~~~l~V~~-----------------~p~~~~~~~~~~v~~G~~~~l~C~~~~~-  152 (745)
                      +++.+|+|.|+|.+.+..+.  .......|.|..                 .|.+...|....+.+|++++|.|.+.+. 
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~  164 (259)
T 3omz_A           85 NLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSW  164 (259)
T ss_dssp             SCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCC
T ss_pred             CCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCcc
Confidence            99999999999999986542  223445677765                 3566777888899999999999998774 


Q ss_pred             CCCeEEEEeCC--Eecc---------CCCCCCceee------cCceEEEccCCCCCCEEEEEEEEe
Q psy11701        153 PEPEIHWVHNG--KPIS---------QAPPNPRRKV------GPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       153 p~~~v~W~~~g--~~~~---------~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      +.+.+.|+|++  ..+.         ......++..      ....|.|.+++.+|+|.|+|.+.+
T Consensus       165 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          165 WSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             SSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             CCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            77899999843  1110         0000112222      235699999999999999999985

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.71  E-value=4.9e-17  Score=138.62  Aligned_cols=118  Identities=22%  Similarity=0.331  Sum_probs=99.4

Q ss_pred             EEEecCCCCCCCCc-ceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCccccccc
Q psy11701        480 VLAFNGAYNGPPSE-IISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY  558 (745)
Q Consensus       480 V~a~n~~G~g~~S~-~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~  558 (745)
                      |.|+|..|.|++|. .+.++|.+++|++|.++++...+.++|.|+|++|.+.+|.|.+|.|+|+..+..... +..   .
T Consensus         3 V~A~n~~G~g~~S~~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~-~~~---~   78 (130)
T 1wfo_A            3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANT-ATV---E   78 (130)
T ss_dssp             CCCCCCCCCCCCCCCCSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCSC-CCE---E
T ss_pred             eEEEecccCCCCCCCcEEEEcCCCCCCCCCceEEEecCCCEEEEEEcCCCCCCCceEEEEEEEEECCCCCce-EEE---E
Confidence            67999999999997 488999999999999999999999999999999988889999999999987543211 110   0


Q ss_pred             ccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       559 ~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      ........++|.+|.|++.|.|+|.|.|..|.|++|..+.+.+
T Consensus        79 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  121 (130)
T 1wfo_A           79 VLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT  121 (130)
T ss_dssp             EECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             EeCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEec
Confidence            1256778999999999999999999999999999987765443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.71  E-value=5.5e-17  Score=150.77  Aligned_cols=165  Identities=20%  Similarity=0.313  Sum_probs=115.1

Q ss_pred             eeEeeCCCeEEEEEEEe----ecCCCeEEEEeCCEeccCC---------CCCCce---eecCceEEEccCCCCCCEEEEE
Q psy11701        134 FINAAEEETVTFECKAS----GLPEPEIHWVHNGKPISQA---------PPNPRR---KVGPNRITIENLRKSDTGNYGC  197 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~----~~p~~~v~W~~~g~~~~~~---------~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C  197 (745)
                      ...+.+|+++.|.|.+.    +.|.+.+.|++++..+...         ....+.   ..++..|.|.+++.+|+|.|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            45688999999999985    3466799999999876310         001111   1245789999999999999999


Q ss_pred             EEEeCCceE-----EEEEEEEEeecC--CeeeeCCCceEEecCceEEEEEEEe-ecCCCeEEEeeCCEEccCceEEEee-
Q psy11701        198 NATNSLGYV-----YKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKELTGGRYTILE-  268 (745)
Q Consensus       198 ~~~~~~g~~-----~~~~~l~v~~~~--p~~~~~~~~~~v~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~-  268 (745)
                      .+.|..|..     ...+.|.|...+  |.+...    ....|+.++|.|.+. +.|.+.|.|++++..+......... 
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~  158 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD  158 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEEC
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEec
Confidence            999976543     345666666422  222211    123588999999995 8899999999999887644332222 


Q ss_pred             -c-CcEE---EcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        269 -T-GDLK---ITDVAFADSGEYTCFARNKLGTAQGSGSL  302 (745)
Q Consensus       269 -~-~~l~---i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l  302 (745)
                       . +.+.   +..+...|.|.|+|.|.|..+..+..+.+
T Consensus       159 ~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          159 PETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             TTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             CCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence             2 2222   23455689999999999999887766543

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.71  E-value=6.4e-17  Score=156.05  Aligned_cols=179  Identities=15%  Similarity=0.153  Sum_probs=119.1

Q ss_pred             eEeeccceeEecCCcEEEEEEEeec--CCCeeEEEECC--E---ec--------------CCCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDG--V---PI--------------NPSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~--~---~i--------------~~~~~~~~~~----~~~~L~   90 (745)
                      .+..+..+.+.+|++++|.|.+.+.  +...+.|+|..  .   .+              ...+|+.+..    ...+|+
T Consensus         3 ~v~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (253)
T 3liz_H            3 QLVESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQ   82 (253)
T ss_dssp             EEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEE
T ss_pred             eEEcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence            3456777889999999999999763  35689999832  1   11              0124554432    223699


Q ss_pred             EccCCCCCCEEEEEEEEeCC---eeeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEee-cCCC-eEEEEe
Q psy11701         91 IKHVEFSDQGSYTCEVSNGV---GEAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVH  161 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~---g~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~  161 (745)
                      |.+++.+|+|.|.|.+.+..   .........|.|.    .+|.+...+....+.+|+.++|.|.+.+ .|.+ .+.|++
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  162 (253)
T 3liz_H           83 MSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (253)
T ss_dssp             ECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             ECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe
Confidence            99999999999999997642   1111233466665    4666665555556678999999999988 6766 899999


Q ss_pred             CCEeccCCCCCC----ceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        162 NGKPISQAPPNP----RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       162 ~g~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      +|..+.......    ......+.|.|..+..+| |.|+|.|.|..+.......+.+.
T Consensus       163 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          163 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             GTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            987442111000    111123579999999999 99999999998876666555543

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.71  E-value=7.6e-17  Score=155.54  Aligned_cols=169  Identities=16%  Similarity=0.192  Sum_probs=116.8

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Eec------C-----------CCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VPI------N-----------PSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~i------~-----------~~~~~~~~~----~~~~L~   90 (745)
                      .+..|....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+      .           ...|+.+..    ...+|+
T Consensus         9 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   88 (261)
T 2xqy_G            9 QLQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQ   88 (261)
T ss_dssp             EEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             eEECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEE
Confidence            34557788899999999999998876  5789999852  211      1           024555432    235899


Q ss_pred             EccCCCCCCEEEEEEEEeCCee--eEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEEEEeC
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGE--AKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWVHN  162 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~--~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W~~~  162 (745)
                      |.+++.+|+|.|.|.+.+..+.  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+++
T Consensus        89 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~  168 (261)
T 2xqy_G           89 LSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG  168 (261)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             EcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecC
Confidence            9999999999999999985421  112335677764    4555544333346789999999999884 766 9999999


Q ss_pred             CEeccCCCCCC----ceeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        163 GKPISQAPPNP----RRKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       163 g~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      +..+.......    ......+.|.|.++..+| |.|+|.|.|....
T Consensus       169 g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          169 SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             TCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             CCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            87653211110    111123579999988888 9999999997654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.71  E-value=6.4e-17  Score=154.94  Aligned_cols=176  Identities=18%  Similarity=0.247  Sum_probs=117.7

Q ss_pred             eEeeccceeEecCCcEEEEEEEeec--CCCeeEEEECC--Eec--------------C---CCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDG--VPI--------------N---PSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~--~~i--------------~---~~~~~~~~~----~~~~L~   90 (745)
                      +...|..+.+.+|++++|.|.+.+.  +.+.+.|+|+.  ..+              .   ...|+.+..    ...+|+
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (242)
T 1hxm_B            4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (242)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence            3455778889999999999999875  56799999842  211              0   235665432    235899


Q ss_pred             EccCCCCCCEEEEEEEEeCC------eeeEEEEEEEEEEec-------CeEEec-CceeEeeCCCeEEEEEEEeec-CC-
Q psy11701         91 IKHVEFSDQGSYTCEVSNGV------GEAKSYSIDLSVLAA-------PYFTVE-PEFINAAEEETVTFECKASGL-PE-  154 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~------g~~~~~~~~l~V~~~-------p~~~~~-~~~~~v~~G~~~~l~C~~~~~-p~-  154 (745)
                      |.+++.+|+|.|.|.+.+..      .......+.|.|...       |...+. |....+.+|+.++|.|.+.|. |. 
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~  163 (242)
T 1hxm_B           84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDV  163 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCC
T ss_pred             ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCC
Confidence            99999999999999998752      111223457777752       333222 444456679999999999885 65 


Q ss_pred             CeEEEEeCCE-eccCCCCCCcee-----ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        155 PEIHWVHNGK-PISQAPPNPRRK-----VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN  213 (745)
Q Consensus       155 ~~v~W~~~g~-~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~  213 (745)
                      +.+.|++++. .+..........     ...+.|.|.++.. | |.|+|.|.|..+.......+.
T Consensus       164 ~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~  226 (242)
T 1hxm_B          164 IKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEII  226 (242)
T ss_dssp             EEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEE
T ss_pred             eEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEee
Confidence            6999999987 554221110111     1124688887765 4 999999999887643333333

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.71  E-value=6.5e-17  Score=156.29  Aligned_cols=184  Identities=17%  Similarity=0.262  Sum_probs=124.6

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecC--CCeEEEEeC--CEecc--------------CCCCCCceeec------CceEE
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLP--EPEIHWVHN--GKPIS--------------QAPPNPRRKVG------PNRIT  183 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--g~~~~--------------~~~~~~~~~~~------~~~L~  183 (745)
                      +...|....+.+|++++|.|.+.+.+  .+.+.|+|.  +..+.              ......++...      ...|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   83 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH   83 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence            34556778899999999999998744  679999982  21110              00111222221      23499


Q ss_pred             EccCCCCCCEEEEEEEEeCCceEE-EEEEEEEeec--------------CCeeeeCCCceEEecCceEEEEEEEeecCCC
Q psy11701        184 IENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAH--------------APEITEAPKDEYTVDGKTVVLTCRVFGAPKP  248 (745)
Q Consensus       184 i~~v~~~d~G~Y~C~~~~~~g~~~-~~~~l~v~~~--------------~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~  248 (745)
                      |.+++.+|+|.|+|.+.+..+... ....|.|...              ++.+...|....+.+|++++|.|.+.+.+.+
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~  163 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR  163 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence            999999999999999998655432 3456666632              5667777778889999999999999988776


Q ss_pred             ----eEEEeeC--CEEcc-------------CceEEEeec---CcEEEcccCCCCCEEEEEEEEeCCceE-EEEEEEEEe
Q psy11701        249 ----EVNWIHN--QKELT-------------GGRYTILET---GDLKITDVAFADSGEYTCFARNKLGTA-QGSGSLTVK  305 (745)
Q Consensus       249 ----~i~W~~~--~~~~~-------------~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~  305 (745)
                          .+.|+++  +..+.             ..++.....   .+|.|.+++.+|+|.|.|.+.|..+.. .....|.|.
T Consensus       164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~  243 (253)
T 3uzq_A          164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK  243 (253)
T ss_dssp             TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEc
Confidence                8999984  22111             134433222   259999999999999999998865432 344567776


Q ss_pred             ecceee
Q psy11701        306 EHTHIT  311 (745)
Q Consensus       306 ~~p~~~  311 (745)
                      ..+.++
T Consensus       244 ~~~~~~  249 (253)
T 3uzq_A          244 RPLEHH  249 (253)
T ss_dssp             CC----
T ss_pred             CCCCCc
Confidence            655443

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.71  E-value=9e-17  Score=154.60  Aligned_cols=168  Identities=20%  Similarity=0.250  Sum_probs=117.5

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE--------------CCEecCC----CCCeEeccC---CcEEEEccC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--------------DGVPINP----SDRISQGNY---GKSLIIKHV   94 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--------------~~~~i~~----~~~~~~~~~---~~~L~i~~~   94 (745)
                      +...|..+.+.+|++++|.| ..+.+.+.+.|+|              ++..+..    ..|+.+...   ..+|.|.++
T Consensus         5 v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v   83 (245)
T 4ei6_B            5 VLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPT   83 (245)
T ss_dssp             CEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSC
T ss_pred             eEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCC
Confidence            45667788999999999999 6677888999998              2222211    156655432   348999999


Q ss_pred             CCCCCEEEEEEEEeCC---eeeEEEEEEEEEE------ecCeEEe-cCceeEeeCCCeEEEEEEEee-cCCC-eEEEEeC
Q psy11701         95 EFSDQGSYTCEVSNGV---GEAKSYSIDLSVL------AAPYFTV-EPEFINAAEEETVTFECKASG-LPEP-EIHWVHN  162 (745)
Q Consensus        95 ~~~d~G~Y~C~~~~~~---g~~~~~~~~l~V~------~~p~~~~-~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~  162 (745)
                      +.+|+|.|+|.+.+..   .........|.|.      .+|.+.. .+....+.+|+.++|.|.+.+ .|.+ .+.|+++
T Consensus        84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~  163 (245)
T 4ei6_B           84 ALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  163 (245)
T ss_dssp             CGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEEC
Confidence            9999999999998531   2222234567776      3555543 455555677999999999988 4544 8999999


Q ss_pred             CEeccCCCCCC------------ceeecCceEEEccCCCCC-CEEEEEEEEeCCc
Q psy11701        163 GKPISQAPPNP------------RRKVGPNRITIENLRKSD-TGNYGCNATNSLG  204 (745)
Q Consensus       163 g~~~~~~~~~~------------~~~~~~~~L~i~~v~~~d-~G~Y~C~~~~~~g  204 (745)
                      |..+.......            ........|.|.....+| +|.|+|.|.|...
T Consensus       164 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l  218 (245)
T 4ei6_B          164 GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (245)
T ss_dssp             TEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence            99886432110            111112358888888888 9999999998653

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.71  E-value=8.3e-17  Score=154.26  Aligned_cols=168  Identities=20%  Similarity=0.339  Sum_probs=116.7

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--------------CEecC---CCCCeEecc---CCcEEEEccCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--------------GVPIN---PSDRISQGN---YGKSLIIKHVE   95 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--------------~~~i~---~~~~~~~~~---~~~~L~i~~~~   95 (745)
                      +...|..+.+.+|++++|.|.+.+ +.+.+.|+|.              +....   ...|+.+..   ...+|.|.+++
T Consensus         5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~   83 (240)
T 3q5y_A            5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   83 (240)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCC
Confidence            445677889999999999999875 7779999982              21111   124555432   23489999999


Q ss_pred             CCCCEEEEEEEEe--CCeeeEEEEEEEEEE------ecCeEEe-cCceeEeeCCCeEEEEEEEee-cCCC-eEEEEeCCE
Q psy11701         96 FSDQGSYTCEVSN--GVGEAKSYSIDLSVL------AAPYFTV-EPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGK  164 (745)
Q Consensus        96 ~~d~G~Y~C~~~~--~~g~~~~~~~~l~V~------~~p~~~~-~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~  164 (745)
                      .+|+|.|+|.+.+  ...........|.|.      .+|.+.. .+....+.+|+.++|.|.+.+ .|.+ .+.|+++|.
T Consensus        84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~  163 (240)
T 3q5y_A           84 LEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGK  163 (240)
T ss_dssp             GGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             hhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCE
Confidence            9999999999973  222222233556665      3555543 344555677999999999988 5656 899999999


Q ss_pred             eccCCCCCC--ceeecC------ceEEEccCCCCC-CEEEEEEEEeCCc
Q psy11701        165 PISQAPPNP--RRKVGP------NRITIENLRKSD-TGNYGCNATNSLG  204 (745)
Q Consensus       165 ~~~~~~~~~--~~~~~~------~~L~i~~v~~~d-~G~Y~C~~~~~~g  204 (745)
                      .+.......  .....+      +.|.|..+..+| +|.|+|.|.|...
T Consensus       164 ~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          164 EVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             EECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             ECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            986432111  011112      348899998888 7799999998754

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=3.3e-17  Score=138.42  Aligned_cols=115  Identities=23%  Similarity=0.332  Sum_probs=99.6

Q ss_pred             EEEEecCCCCCCCCcceEEeCCCCCCC-CCCceeEEEcCCceEEEEeeCCCC--CCCceeeEEEEEEEcCCcccCCcccc
Q psy11701        479 RVLAFNGAYNGPPSEIISFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPEQ--PNGVLMGYKIKYQSVKGTKVGPLLER  555 (745)
Q Consensus       479 ~V~a~n~~G~g~~S~~~~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~~~~~~  555 (745)
                      +|.|.|..|.|++|..+.+.|.++.|. +|.++++...+.++|.|+|++|..  .+|.|.+|.|+|+..+...+..    
T Consensus         3 ~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~----   78 (124)
T 2ed9_A            3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEME----   78 (124)
T ss_dssp             SCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCCEE----
T ss_pred             eEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcceE----
Confidence            578999999999999999999999888 788999999999999999999986  7889999999999876543321    


Q ss_pred             cccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       556 ~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                         .......++.|.+|+|++.|.|+|.|.|..|.|++|..+.+.
T Consensus        79 ---~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~  120 (124)
T 2ed9_A           79 ---TLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAE  120 (124)
T ss_dssp             ---EECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEEE
T ss_pred             ---EecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEE
Confidence               125567899999999999999999999999999999876544

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.71  E-value=5.7e-15  Score=133.83  Aligned_cols=242  Identities=16%  Similarity=0.254  Sum_probs=164.9

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEee-cC---CCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASG-LP---EPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~-~p---~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .+...|....+..|+.++|+|.+.+ .|   +..++|+|||..+..         ....|.|..+...|+|.|+|.+.+.
T Consensus         4 tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG---------aT~tLti~s~t~sdSG~YqCvVTDa   74 (304)
T 3shs_A            4 TVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN---------NTATLTVADATSENAGSYKVTVQDT   74 (304)
T ss_dssp             EEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC---------CcceEEeeeccccCCeEEEEEEEEC
Confidence            3445577778999999999999965 45   348999999988652         2358999999999999999999998


Q ss_pred             CceEEEEEEEEEeecCC-ee-eeCCCceEEecCceEEEEEEE--ee-cC-----CCeEEEeeCCEEccCceEEEeecCcE
Q psy11701        203 LGYVYKDVYVNVLAHAP-EI-TEAPKDEYTVDGKTVVLTCRV--FG-AP-----KPEVNWIHNQKELTGGRYTILETGDL  272 (745)
Q Consensus       203 ~g~~~~~~~l~v~~~~p-~~-~~~~~~~~v~~g~~~~l~C~~--~~-~p-----~~~i~W~~~~~~~~~~~~~~~~~~~l  272 (745)
                      .|....+..+.|...+. .+ ...|....+..|..+.|.+.+  .+ .+     ...++|++++..+...       ..|
T Consensus        75 ~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA-------q~l  147 (304)
T 3shs_A           75 DTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT-------QDI  147 (304)
T ss_dssp             TTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS-------SEE
T ss_pred             CCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc-------ccc
Confidence            88776554444443222 22 223555556667889999887  43 33     3589999999876543       257


Q ss_pred             EEcccCCCCCEEEEEEEEeCCce--EEEEEEEEEeecceeecCCCcEEEecCCeEEEEEEEE--------ecCCCCcEEE
Q psy11701        273 KITDVAFADSGEYTCFARNKLGT--AQGSGSLTVKEHTHITDQPEDYEVEAGQSATFRCNAV--------SDPSLKLSIV  342 (745)
Q Consensus       273 ~i~~~~~~d~G~Y~C~~~n~~g~--~~~~~~l~v~~~p~~~~~p~~~~~~~g~~~~l~C~~~--------~~~~~~~~i~  342 (745)
                      ++......++|.|+|.+.+..+.  .+.+..+.+..............+..|+.+.|.-.+.        |.|...+.+.
T Consensus       148 T~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (304)
T 3shs_A          148 TIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYN  227 (304)
T ss_dssp             EECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEE
T ss_pred             ceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEE
Confidence            77788889999999999998763  4556666665444333444556677888888876655        2233346677


Q ss_pred             EeeC--Cee----ccCC---CCCeEEEcCCeEEEEecCCCCCCEEEEEEEE
Q psy11701        343 WLRG--SEP----IDFE---SEPRFVQSNDYSLTVTKSSELDSGQYTCRAQ  384 (745)
Q Consensus       343 W~~~--~~~----~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~  384 (745)
                      |+..  ++.    +...   ....+.+..++.|--.....+|...|.|.+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (304)
T 3shs_A          228 WYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK  278 (304)
T ss_dssp             EEEECTTCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEeecCccCchhhhhhhhhhhccceeCCCcceeecccccccchheeeHHH
Confidence            8743  221    1000   1123444455556666667778889999886

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.70  E-value=1.3e-16  Score=129.55  Aligned_cols=96  Identities=27%  Similarity=0.487  Sum_probs=83.2

Q ss_pred             CCCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEE
Q psy11701         30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      +..|+.|+..|++..+.+|+++.|.|.+.|.|.|.|+|+|||..|..+.++.+...+  .+|.|.+++.+|+|.|+|.|.
T Consensus        10 ~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence            345677888999999999999999999999999999999999999988887765433  479999999999999999999


Q ss_pred             eCCeeeEEEEEEEEEEecC
Q psy11701        108 NGVGEAKSYSIDLSVLAAP  126 (745)
Q Consensus       108 ~~~g~~~~~~~~l~V~~~p  126 (745)
                      |..|... .++.|.|..+|
T Consensus        90 N~~G~~~-~~~~l~V~~pP  107 (107)
T 3knb_B           90 NAAGEAY-AAAAVTVLEPP  107 (107)
T ss_dssp             ETTEEEE-EEEEEEEEC--
T ss_pred             ECCCEEE-EEEEEEEEcCC
Confidence            9999876 67889998765

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.70  E-value=1.5e-16  Score=153.69  Aligned_cols=176  Identities=21%  Similarity=0.323  Sum_probs=123.6

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecC--CCeEEEEeC--CEecc---C-----------CCCCCceeec------CceEEEc
Q psy11701        130 VEPEFINAAEEETVTFECKASGLP--EPEIHWVHN--GKPIS---Q-----------APPNPRRKVG------PNRITIE  185 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--g~~~~---~-----------~~~~~~~~~~------~~~L~i~  185 (745)
                      ..|....+.+|++++|.|.+.+.|  .+.+.|+|+  +..+.   .           .....++...      ...|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS   84 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence            345667899999999999998865  579999994  22210   0           0011233221      2489999


Q ss_pred             cCCCCCCEEEEEEEEeCCce-----EEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEEeecCCC-----eEEEee-
Q psy11701        186 NLRKSDTGNYGCNATNSLGY-----VYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP-----EVNWIH-  254 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g~-----~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~-----~i~W~~-  254 (745)
                      +++.+|+|.|+|.+.+..|.     ....+.|.|.. ++.+...|....+.+|++++|.|.+.+.+.+     .+.|++ 
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~-~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~  163 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS-DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ  163 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC-CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeeecc-cccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence            99999999999999988552     22335677764 5666677777889999999999999988765     899999 


Q ss_pred             -CCEEcc-------------CceEEEee---cCcEEEcccCCCCCEEEEEEEEeCCce-EEEEEEEEEee
Q psy11701        255 -NQKELT-------------GGRYTILE---TGDLKITDVAFADSGEYTCFARNKLGT-AQGSGSLTVKE  306 (745)
Q Consensus       255 -~~~~~~-------------~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~  306 (745)
                       ++..+.             ..++....   ...|.|.+++.+|+|.|+|.+.+.... ......|.|..
T Consensus       164 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          164 KPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             CTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             CCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence             554321             23444322   236999999999999999999875432 22344566653

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.70  E-value=7.5e-18  Score=159.28  Aligned_cols=188  Identities=14%  Similarity=0.191  Sum_probs=103.7

Q ss_pred             EEeeCC---CCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceee
Q psy11701        522 LKWVKP---EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF  598 (745)
Q Consensus       522 l~W~~p---~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~  598 (745)
                      .+|...   .+.++.|++|.|++.......+ ...      .....+++++.+|.|++.|.|+|.|+|..|.|++|....
T Consensus         7 ~qW~dvgv~~~~~~~Vt~Y~~~~~~~~~~~~-~~~------~~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~   79 (232)
T 4go6_B            7 NQWFDVGVIKGTNVMVTHYFLPPDDAVPSDD-DLG------TVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISA   79 (232)
T ss_dssp             -CCEEEEEESSSEEEECEEECCCC-------------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEE
T ss_pred             CEeecCCEecCCCEEEEEEEEEeeCCCCCcE-EEE------ECCCccEEEeCCCCCCCEEEEEEEEEeCCCcccccccee
Confidence            456432   3455678999998765432221 111      134567899999999999999999999999999987765


Q ss_pred             ecccCC-CCCCC---CCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceE
Q psy11701        599 YVPFKN-PDNVE---GRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPY  674 (745)
Q Consensus       599 ~~~~~~-~~~~~---~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y  674 (745)
                      ..+... ++..+   .....++++.|+|.+|.  ..+|.|.+|.|+|+..............             .....
T Consensus        80 ~~t~~~~~~~~~~~~~~~~~~~sv~l~W~~P~--~~~G~i~~Y~v~~~~~~~~~~~~~~~~~-------------~~~~~  144 (232)
T 4go6_B           80 FKTCLPGFPGAPCAIKISKSPDGAHLTWEPPS--VTSGKIIEYSVYLAIQSSQAGGELKSST-------------PAQLA  144 (232)
T ss_dssp             EECCCTTSCCCCEEEEEEEETTEEEEEEECCS--CCSSCCCEEEEEEEEC--------------------------CCEE
T ss_pred             eeecCCCCCCCCeeeEEecCCCEEEEEEeCCC--CCCCceeeEEEEEEECCCCCcceeeecc-------------CCcee
Confidence            443221 11111   11234588999999765  3578999999999865433211111000             00000


Q ss_pred             EEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCC
Q psy11701        675 EIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE  740 (745)
Q Consensus       675 ~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~  740 (745)
                      .+++.      .+.....   ........+.+.+|.+++.|.|||+|.|.+|.|++|+.+.++++.
T Consensus       145 ~~~~~------~~~~~~~---~~~~~~l~~~~~~L~~~t~Y~frV~A~N~~G~Gp~S~v~t~~~~~  201 (232)
T 4go6_B          145 FMRVY------CGPSPSC---LVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETS  201 (232)
T ss_dssp             EEEEE------EESSSEE---EEEHHHHTTBCBEESSSEEEEEEEEEECSSCBCCCEEEEEECC--
T ss_pred             eEEEE------eccCceE---EEEccccEEeeecCccCCceEEEEEEECCCcCCCCcccEEeccCC
Confidence            00000      0000000   011223334456899999999999999999999999877666543

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.70  E-value=6.6e-17  Score=157.83  Aligned_cols=170  Identities=22%  Similarity=0.247  Sum_probs=118.1

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEec------------CC----CCCeEecc---CCcEEEEc
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPI------------NP----SDRISQGN---YGKSLIIK   92 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i------------~~----~~~~~~~~---~~~~L~i~   92 (745)
                      ..+...|..+.+.+|++++|.|.+. .+.+.+.|+|  .+..+            ..    ..|+.+..   ...+|.|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            3455677788999999999999986 5777999998  22211            11    15665543   24589999


Q ss_pred             cCCCCCCEEEEEEEEeC-CeeeEEEEEEEEEEe------cCeEEe-cCceeEeeCCCeEEEEEEEeecCC-C-eEEEEeC
Q psy11701         93 HVEFSDQGSYTCEVSNG-VGEAKSYSIDLSVLA------APYFTV-EPEFINAAEEETVTFECKASGLPE-P-EIHWVHN  162 (745)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~-~g~~~~~~~~l~V~~------~p~~~~-~~~~~~v~~G~~~~l~C~~~~~p~-~-~v~W~~~  162 (745)
                      +++.+|+|.|+|.+.+. ..........|.|..      +|.+.. .+....+.+|+.++|.|.+.+.++ + .++|+++
T Consensus       106 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~  185 (268)
T 3pl6_D          106 RTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  185 (268)
T ss_dssp             SCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEES
T ss_pred             CCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEEC
Confidence            99999999999999864 122222345677765      565443 355555667999999999988554 4 8999999


Q ss_pred             CEeccCCCCC------------CceeecCceEEEccCCCCC-CEEEEEEEEeCCc
Q psy11701        163 GKPISQAPPN------------PRRKVGPNRITIENLRKSD-TGNYGCNATNSLG  204 (745)
Q Consensus       163 g~~~~~~~~~------------~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~~~~g  204 (745)
                      |+.+......            .......+.|.|.....+| +|.|+|.|.|...
T Consensus       186 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l  240 (268)
T 3pl6_D          186 GKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  240 (268)
T ss_dssp             SSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence            9988642111            0111112457888887777 9999999998754

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.70  E-value=2.3e-16  Score=152.72  Aligned_cols=170  Identities=22%  Similarity=0.305  Sum_probs=121.6

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEee--cCCCeEEEEeCC--Eec--------------cCCCCCCceeec------Cc
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASG--LPEPEIHWVHNG--KPI--------------SQAPPNPRRKVG------PN  180 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~g--~~~--------------~~~~~~~~~~~~------~~  180 (745)
                      +|.+...+....+.+|++++|.|.+.+  .+.+.+.|+|..  ..+              .......++...      ..
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            456677788899999999999999987  366799999732  111              011112233322      23


Q ss_pred             eEEEccCCCCCCEEEEEEEEeC------------CceEEEEEEEEEeec--------------CCeeeeCCCceEEecCc
Q psy11701        181 RITIENLRKSDTGNYGCNATNS------------LGYVYKDVYVNVLAH--------------APEITEAPKDEYTVDGK  234 (745)
Q Consensus       181 ~L~i~~v~~~d~G~Y~C~~~~~------------~g~~~~~~~l~v~~~--------------~p~~~~~~~~~~v~~g~  234 (745)
                      .|.|.+++.+|+|.|.|.+.+.            .+.......|.|...              ++.+...+....+.+|+
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  165 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE  165 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence            6999999999999999999986            222333456777653              45667778888899999


Q ss_pred             eEEEEEEEeecCC-CeEEEeeC--CEEc-------------cCceEEEeecC---cEEEcccCCCCCEEEEEEEEeCCc
Q psy11701        235 TVVLTCRVFGAPK-PEVNWIHN--QKEL-------------TGGRYTILETG---DLKITDVAFADSGEYTCFARNKLG  294 (745)
Q Consensus       235 ~~~l~C~~~~~p~-~~i~W~~~--~~~~-------------~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~~~n~~g  294 (745)
                      +++|.|.+.+.+. +.+.|++.  +..+             ...++.....+   +|.|.+++.+|+|.|.|.+.|...
T Consensus       166 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          166 RATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             CEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            9999999988776 78999983  2211             12344443333   499999999999999999987543

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.70  E-value=9.1e-17  Score=151.88  Aligned_cols=168  Identities=17%  Similarity=0.286  Sum_probs=115.3

Q ss_pred             CceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Ee---cc-------------CCCCCCceeec------CceEEEc
Q psy11701        132 PEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KP---IS-------------QAPPNPRRKVG------PNRITIE  185 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~---~~-------------~~~~~~~~~~~------~~~L~i~  185 (745)
                      |....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..   +.             ......++...      ...|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence            4556789999999999998765  6799999853  21   10             00111233221      3489999


Q ss_pred             cCCCCCCEEEEEEEEeCCc-----eEEEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-eEEEeeC
Q psy11701        186 NLRKSDTGNYGCNATNSLG-----YVYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNWIHN  255 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g-----~~~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~~~  255 (745)
                      +++.+|+|.|.|.+.+..+     .......|.|..   .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+++
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  166 (222)
T 1q9r_B           87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  166 (222)
T ss_dssp             SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecC
Confidence            9999999999999998654     122234666653   34555544433345689999999999986 877 9999999


Q ss_pred             CEEccCceEE-E------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        256 QKELTGGRYT-I------LETGDLKITDVAFADSGEYTCFARNKLGTAQGSG  300 (745)
Q Consensus       256 ~~~~~~~~~~-~------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~  300 (745)
                      +..+...... .      ...+.|.|.++...| |.|+|.|.|..+......
T Consensus       167 g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~  217 (222)
T 1q9r_B          167 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  217 (222)
T ss_dssp             TBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence            8765321111 1      112368999998889 999999999988754443

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.70  E-value=2.3e-16  Score=152.70  Aligned_cols=176  Identities=20%  Similarity=0.387  Sum_probs=121.8

Q ss_pred             CceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Eecc--------------CCCCCCceee------cCceEEEccC
Q psy11701        132 PEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KPIS--------------QAPPNPRRKV------GPNRITIENL  187 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~~~--------------~~~~~~~~~~------~~~~L~i~~v  187 (745)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  ..+.              ......++..      ....|.|.++
T Consensus         9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (256)
T 3umt_A            9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL   88 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence            4445689999999999998865  6799999832  1110              0001122222      1235999999


Q ss_pred             CCCCCEEEEEEEEeC----CceEEEEEEEEEeec---------------CCeeeeCCCceEEecCceEEEEEEEeecCCC
Q psy11701        188 RKSDTGNYGCNATNS----LGYVYKDVYVNVLAH---------------APEITEAPKDEYTVDGKTVVLTCRVFGAPKP  248 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~----~g~~~~~~~l~v~~~---------------~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~  248 (745)
                      +.+|+|.|.|.+.+.    .+.......|.|...               ++.+...|....+.+|++++|.|.+.+.+.+
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  168 (256)
T 3umt_A           89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS  168 (256)
T ss_dssp             CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT
T ss_pred             CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc
Confidence            999999999999987    333333466777642               6677777888889999999999999998888


Q ss_pred             eEEEeeC--CEEc-------------cCceEEEeecC---cEEEcccCCCCCEEEEEEEEeCCceE-EEEEEEEEeec
Q psy11701        249 EVNWIHN--QKEL-------------TGGRYTILETG---DLKITDVAFADSGEYTCFARNKLGTA-QGSGSLTVKEH  307 (745)
Q Consensus       249 ~i~W~~~--~~~~-------------~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~  307 (745)
                      .+.|++.  +..+             ...++.....+   +|.|.+++.+|+|.|.|.+.+..... .....|.|..+
T Consensus       169 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~  246 (256)
T 3umt_A          169 NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRA  246 (256)
T ss_dssp             CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence            9999984  2111             12344443332   49999999999999999998754432 33466776654

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.70  E-value=7.3e-17  Score=151.44  Aligned_cols=170  Identities=17%  Similarity=0.243  Sum_probs=113.1

Q ss_pred             EeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--EecC----------------CCCCeEecc----CCcEEEEc
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VPIN----------------PSDRISQGN----YGKSLIIK   92 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~i~----------------~~~~~~~~~----~~~~L~i~   92 (745)
                      +..|....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.                ...|+.+..    ...+|+|.
T Consensus         4 v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (215)
T 1c5d_H            4 LLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMN   83 (215)
T ss_dssp             EEEECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEES
T ss_pred             EEcCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEEC
Confidence            4557778899999999999998764  4689999852  2210                123555432    12489999


Q ss_pred             cCCCCCCEEEEEEEEeCCee--eEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-CCC-eEEEEeCCE
Q psy11701         93 HVEFSDQGSYTCEVSNGVGE--AKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-PEP-EIHWVHNGK  164 (745)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~g~--~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W~~~g~  164 (745)
                      +++.+|+|.|.|.+.+..+.  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|+++|.
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  163 (215)
T 1c5d_H           84 SLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGAL  163 (215)
T ss_dssp             SCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTT
T ss_pred             CCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCc
Confidence            99999999999999875421  111235677763    4555544433346789999999999985 877 999999987


Q ss_pred             eccCCCCCCceeecCceEE----EccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        165 PISQAPPNPRRKVGPNRIT----IENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       165 ~~~~~~~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      .+.... ....... +.+.    +.....+| |.|+|.|.|..+.....
T Consensus       164 ~~~~~~-~~~~~~~-g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~  209 (215)
T 1c5d_H          164 SSDVHT-FPAVLQS-GLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVD  209 (215)
T ss_dssp             CCSCCB-CCCEEET-TEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cCceEe-cCcccCC-CCEEEEEEEecccCCC-CeEEEEEEeCCCCccEE
Confidence            643211 1111111 2211    22444456 99999999988765433

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.70  E-value=8e-17  Score=151.98  Aligned_cols=170  Identities=20%  Similarity=0.276  Sum_probs=114.9

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecC--CCeEEEEeC--CEecc------C--------CCCCCceee------cCceEEEc
Q psy11701        130 VEPEFINAAEEETVTFECKASGLP--EPEIHWVHN--GKPIS------Q--------APPNPRRKV------GPNRITIE  185 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--g~~~~------~--------~~~~~~~~~------~~~~L~i~  185 (745)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+|+  |..+.      .        .....++..      ....|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN   84 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence            345667889999999999999865  679999996  33221      0        001123322      23589999


Q ss_pred             cCCCCCCEEEEEEEEeCCce----EEEEEEEEEeec---CCeeeeCCCceEEecCceEEEEEEEee-cCCC-eEEEeeCC
Q psy11701        186 NLRKSDTGNYGCNATNSLGY----VYKDVYVNVLAH---APEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQ  256 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g~----~~~~~~l~v~~~---~p~~~~~~~~~~v~~g~~~~l~C~~~~-~p~~-~i~W~~~~  256 (745)
                      +++.+|+|.|+|.+.+..+.    ....+.|.|...   +|.+...+....+.+|+.++|.|.+.+ .|.+ .+.|++++
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  164 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (219)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence            99999999999999997631    112456676642   355544443345678999999999998 7888 99999998


Q ss_pred             EEccC---ceEE----EeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        257 KELTG---GRYT----ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG  300 (745)
Q Consensus       257 ~~~~~---~~~~----~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~  300 (745)
                      ..+..   ....    ....+.|.|.... .|.|.|+|.|.|..+......
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~  214 (219)
T 1c1e_H          165 LSSGVHTFPAVLQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDK  214 (219)
T ss_dssp             BCTTEEECCCEESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEE
T ss_pred             cccceEecCCcccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEE
Confidence            75421   1100    0112358884444 466999999999887754443

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.69  E-value=2.3e-17  Score=153.82  Aligned_cols=171  Identities=18%  Similarity=0.340  Sum_probs=108.7

Q ss_pred             CCeeEeecccee-EecCCcEEEEEEEeecC----CCeeEEEECCEecCCCC--CeEeccCCcEEEE------ccCCCCCC
Q psy11701         33 PKQQYVTRKKEV-ALRNKKVELFCIFGGTP----LPQTIWSKDGVPINPSD--RISQGNYGKSLII------KHVEFSDQ   99 (745)
Q Consensus        33 p~~~~~~~~~~~-v~~G~~~~l~C~~~g~p----~~~v~W~~~~~~i~~~~--~~~~~~~~~~L~i------~~~~~~d~   99 (745)
                      |..++.+|.... +.+|++++|.|.+.|.+    .+.|.|+|++.++....  .... ..++.|.+      .....+|+
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~-~~~g~~~~~~~l~i~~~d~~d~   80 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE-QYNSTYRVVSVLTVLHQDWLNG   80 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEE-CTTSCEEEEEEEECCHHHHHTT
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCcee-ccCCcEEEEEEEEEEHHHccCC
Confidence            555555555444 37999999999998875    24999999998876431  1111 11223333      23333459


Q ss_pred             EEEEEEEEeCCeee-EEEEEEE--EEEecCeEEecCceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCEeccCCCCCCc
Q psy11701        100 GSYTCEVSNGVGEA-KSYSIDL--SVLAAPYFTVEPEFINAAEEETVTFECKASGL-PE-PEIHWVHNGKPISQAPPNPR  174 (745)
Q Consensus       100 G~Y~C~~~~~~g~~-~~~~~~l--~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~~~~~~~~  174 (745)
                      |.|+|.|.+..+.. .+..+.+  .+..+|.+...+.......|+.+.|.|.+.|. |. +.++|+|+|..+........
T Consensus        81 g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~  160 (207)
T 1l6x_A           81 KEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP  160 (207)
T ss_dssp             CCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCC
T ss_pred             ceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCc
Confidence            99999999986653 2233332  34567776655443323456779999999984 54 49999999998763211111


Q ss_pred             eeecCc------eEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        175 RKVGPN------RITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       175 ~~~~~~------~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      ....++      .|.|.....+|+|.|+|.|.|...
T Consensus       161 ~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          161 VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             eECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence            122333      344555555679999999998753

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.69  E-value=1.1e-16  Score=150.37  Aligned_cols=170  Identities=20%  Similarity=0.312  Sum_probs=120.2

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCC---Ee--cc------CCCCCCceee----cCceEEEccCCCC
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG---KP--IS------QAPPNPRRKV----GPNRITIENLRKS  190 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g---~~--~~------~~~~~~~~~~----~~~~L~i~~v~~~  190 (745)
                      |.+...|....+.+|++++|.|.+.+.|.+.+.|+|.+   ..  +.      ......++..    ....|.|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            44556678889999999999999999888999999832   11  00      0001122221    2348999999999


Q ss_pred             CCEEEEEEEEeCCceEE-EEEEEEEe--ecCCeeeeCCCceEEecCceEEEEEEEeecCC--CeEEEeeCCEEccCce-E
Q psy11701        191 DTGNYGCNATNSLGYVY-KDVYVNVL--AHAPEITEAPKDEYTVDGKTVVLTCRVFGAPK--PEVNWIHNQKELTGGR-Y  264 (745)
Q Consensus       191 d~G~Y~C~~~~~~g~~~-~~~~l~v~--~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~-~  264 (745)
                      |+|.|+|.+.+..+... ....|.|.  ..+|.+...+....+..|+.++|.|.+.+.++  +.+.|++++..+..+. .
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  161 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQ  161 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred             cCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEe
Confidence            99999999998754322 23455552  34677776666666667889999999988654  3899999998876532 1


Q ss_pred             E--E--eec------CcEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        265 T--I--LET------GDLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       265 ~--~--~~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      .  .  ..+      ..|.|.....+|.|.|+|.|.|....
T Consensus       162 ~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          162 SVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             ccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            1  1  111      24778888888999999999997643

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.69  E-value=1.8e-16  Score=152.95  Aligned_cols=166  Identities=20%  Similarity=0.329  Sum_probs=115.9

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCC-----Eecc------CCCCCCceee----cCceEEEccCCCC
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG-----KPIS------QAPPNPRRKV----GPNRITIENLRKS  190 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g-----~~~~------~~~~~~~~~~----~~~~L~i~~v~~~  190 (745)
                      ..+...|....+.+|++++|.|.+.+.|.+.+.|+|+.     ..+.      ......++..    ....|.|.+++.+
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            34556677888999999999999999888999999953     1110      0011122221    1237999999999


Q ss_pred             CCEEEEEEEEeCCceEE-EEEEEEEeec------------------CCeeeeCCCceEEecCceEEEEEEEeecC--CCe
Q psy11701        191 DTGNYGCNATNSLGYVY-KDVYVNVLAH------------------APEITEAPKDEYTVDGKTVVLTCRVFGAP--KPE  249 (745)
Q Consensus       191 d~G~Y~C~~~~~~g~~~-~~~~l~v~~~------------------~p~~~~~~~~~~v~~g~~~~l~C~~~~~p--~~~  249 (745)
                      |+|.|+|.+.|..+... ....|.|...                  ++.+...+....+.+|++++|.|.+.+.+  .+.
T Consensus        85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~  164 (250)
T 3esu_F           85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSW  164 (250)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSE
T ss_pred             hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCE
Confidence            99999999998755432 2245666531                  23344556667889999999999998876  678


Q ss_pred             EEEeeC--CEEc------------------cCceEEEeecC-----cEEEcccCCCCCEEEEEEEEe
Q psy11701        250 VNWIHN--QKEL------------------TGGRYTILETG-----DLKITDVAFADSGEYTCFARN  291 (745)
Q Consensus       250 i~W~~~--~~~~------------------~~~~~~~~~~~-----~l~i~~~~~~d~G~Y~C~~~n  291 (745)
                      +.|+++  +..+                  ...++....++     +|.|.+++.+|+|.|.|.+.+
T Consensus       165 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          165 MNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            999986  3222                  11345444332     599999999999999999986

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.69  E-value=1.2e-16  Score=156.41  Aligned_cols=168  Identities=19%  Similarity=0.254  Sum_probs=118.3

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCE-----eccC------CCCCCceee----cCceEEEccCCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGK-----PISQ------APPNPRRKV----GPNRITIENLRK  189 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~-----~~~~------~~~~~~~~~----~~~~L~i~~v~~  189 (745)
                      .+.+...|....+.+|++++|.|.+.+.|.+.+.|+|++.     .+..      .....++..    ....|.|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            4456667888889999999999999998888999998542     1110      011223322    123899999999


Q ss_pred             CCCEEEEEEEEeCCce-EEEEEEEEEeec-------------CCeeeeCCCceEEecCceEEEEEEEeecC--CCeEEEe
Q psy11701        190 SDTGNYGCNATNSLGY-VYKDVYVNVLAH-------------APEITEAPKDEYTVDGKTVVLTCRVFGAP--KPEVNWI  253 (745)
Q Consensus       190 ~d~G~Y~C~~~~~~g~-~~~~~~l~v~~~-------------~p~~~~~~~~~~v~~g~~~~l~C~~~~~p--~~~i~W~  253 (745)
                      +|+|.|+|.+.|..+. ......|.|...             ++.+...|....+.+|++++|.|.+.+.+  .+.+.|+
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~  171 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWV  171 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEE
Confidence            9999999999987543 122245555532             12233445677889999999999999876  4789999


Q ss_pred             eCC--EEc------------------cCceEEEeec-----CcEEEcccCCCCCEEEEEEEEeC
Q psy11701        254 HNQ--KEL------------------TGGRYTILET-----GDLKITDVAFADSGEYTCFARNK  292 (745)
Q Consensus       254 ~~~--~~~------------------~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~n~  292 (745)
                      +++  ..+                  ...++....+     ..|.|.+++.+|+|.|.|.+.|.
T Consensus       172 k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          172 RQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            953  111                  1235555433     27999999999999999999997

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.69  E-value=4.1e-17  Score=159.44  Aligned_cols=194  Identities=18%  Similarity=0.315  Sum_probs=111.0

Q ss_pred             CCCCCCEEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEec-----
Q psy11701         94 VEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPI-----  166 (745)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~-----  166 (745)
                      .+++|.+.|.|.+.+..|... ...      ...+...|....+.+|++++|.|.+.+ +.+.+.|+|.  +...     
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~-~~~------~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~   74 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSG-GGG------GMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLIN   74 (270)
T ss_dssp             --------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEE
T ss_pred             chhhhHHHHHHHHhccCCccc-ccc------ceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEE
Confidence            357899999999988765433 222      233455567788999999999999876 6779999982  2110     


Q ss_pred             -------cCCCCCC-ceee-----cCceEEEccCCCCCCEEEEEEEEeCCc----eEEEEEEEEEee-----cCCeee-e
Q psy11701        167 -------SQAPPNP-RRKV-----GPNRITIENLRKSDTGNYGCNATNSLG----YVYKDVYVNVLA-----HAPEIT-E  223 (745)
Q Consensus       167 -------~~~~~~~-~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~~~g----~~~~~~~l~v~~-----~~p~~~-~  223 (745)
                             ....... ++..     .+..|.|.+++.+|+|.|.|.+.+...    .......|.|..     .+|.+. .
T Consensus        75 ~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~  154 (270)
T 3qib_D           75 FQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF  154 (270)
T ss_dssp             EETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE
T ss_pred             ECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE
Confidence                   0000000 2211     245899999999999999999986421    222334566653     134433 3


Q ss_pred             CCCceEEecCceEEEEEEEee-cCCC-eEEEeeCCEEccCceEEEe---------ec------CcEEEcccCCCC-CEEE
Q psy11701        224 APKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGRYTIL---------ET------GDLKITDVAFAD-SGEY  285 (745)
Q Consensus       224 ~~~~~~v~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~~~~~~---------~~------~~l~i~~~~~~d-~G~Y  285 (745)
                      .+....+..|+.++|.|.+.+ .|.+ .+.|++++..+........         .+      ..|.|.....+| .|.|
T Consensus       155 ~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~Y  234 (270)
T 3qib_D          155 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHF  234 (270)
T ss_dssp             ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEE
T ss_pred             CCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeE
Confidence            334444556999999999988 5655 7999999988754322110         12      246777777677 9999


Q ss_pred             EEEEEeCCce
Q psy11701        286 TCFARNKLGT  295 (745)
Q Consensus       286 ~C~~~n~~g~  295 (745)
                      +|.+.|....
T Consensus       235 tC~v~~~~l~  244 (270)
T 3qib_D          235 RCQVQFYGLS  244 (270)
T ss_dssp             EEEEEECCBC
T ss_pred             EEEEEecCCC
Confidence            9999987543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.69  E-value=1.3e-15  Score=138.43  Aligned_cols=153  Identities=16%  Similarity=0.265  Sum_probs=111.8

Q ss_pred             eEeeCCCeEEEEEEEeecCCC--eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        135 INAAEEETVTFECKASGLPEP--EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       135 ~~v~~G~~~~l~C~~~~~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l  212 (745)
                      ..+..|++++|.|.+ +.|.+  .|+|++.+..+.    ..........|.|.+++.+|+|.|.|.+.|..+.....+.|
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~l   91 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSLG----AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQL   91 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC----CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeecccccC----cEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEE
Confidence            588999999999999 87777  999999554331    11112335689999999999999999999998888888999


Q ss_pred             EEeecCCeeeeCCCceEEecCceEEEEEEEeec-CC----CeEEEeeCCEEccCceE---EE------e---ecC-----
Q psy11701        213 NVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA-PK----PEVNWIHNQKELTGGRY---TI------L---ETG-----  270 (745)
Q Consensus       213 ~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~----~~i~W~~~~~~~~~~~~---~~------~---~~~-----  270 (745)
                      .|...|-.+...+.  .+..|+.. |.|.+.+. |.    +.|.|++++..+....+   ..      .   ...     
T Consensus        92 tV~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vt  168 (210)
T 1gsm_A           92 LVYAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVT  168 (210)
T ss_dssp             EEEBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEE
T ss_pred             EEEecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEE
Confidence            99864433443443  56678888 99999986 64    37999999999865432   11      0   111     


Q ss_pred             -cEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        271 -DLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       271 -~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                       +|.+.....+|.+.|+|.|.+....
T Consensus       169 s~~~~~~~~~D~~~~~tC~a~~~L~~  194 (210)
T 1gsm_A          169 ERWRLPPLGTPVPPALYCQATMRLPG  194 (210)
T ss_dssp             EEEECCCCCSSCCSEEEEEEEEEETT
T ss_pred             EEEeecCCcccCCceEEEEEEeeCCC
Confidence             2334466667778999999876543

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.69  E-value=5e-16  Score=150.50  Aligned_cols=177  Identities=17%  Similarity=0.267  Sum_probs=119.8

Q ss_pred             ecCceeEeeCCCeEEEEEEEeec--CCCeEEEEeCC--E---ec----------cCCCCCCceeec------CceEEEcc
Q psy11701        130 VEPEFINAAEEETVTFECKASGL--PEPEIHWVHNG--K---PI----------SQAPPNPRRKVG------PNRITIEN  186 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~g--~---~~----------~~~~~~~~~~~~------~~~L~i~~  186 (745)
                      ..|....+.+|++++|.|.+.+.  +.+.+.|+|..  .   .+          .......++...      ...|.|.+
T Consensus        13 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   92 (257)
T 3gkz_A           13 QESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS   92 (257)
T ss_dssp             EEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             ECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence            34556678999999999999884  46799999832  1   11          001112233221      23799999


Q ss_pred             CCCCCCEEEEEEEEeCC----ceEEEEEEEEEeec-------------CCeeeeCCCceEEecCceEEEEEEEeecCCC-
Q psy11701        187 LRKSDTGNYGCNATNSL----GYVYKDVYVNVLAH-------------APEITEAPKDEYTVDGKTVVLTCRVFGAPKP-  248 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~----g~~~~~~~l~v~~~-------------~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~-  248 (745)
                      ++.+|+|.|+|.+.|..    ........|.|...             ++.+...+....+.+|++++|.|.+.+.+.+ 
T Consensus        93 v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~  172 (257)
T 3gkz_A           93 VSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSS  172 (257)
T ss_dssp             CCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGG
T ss_pred             CChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccce
Confidence            99999999999999862    22223456777643             3566777777889999999999999988777 


Q ss_pred             eEEEeeC--CEEcc-------------CceEEEeec---CcEEEcccCCCCCEEEEEEEEeCCceE-EEEEEEEEee
Q psy11701        249 EVNWIHN--QKELT-------------GGRYTILET---GDLKITDVAFADSGEYTCFARNKLGTA-QGSGSLTVKE  306 (745)
Q Consensus       249 ~i~W~~~--~~~~~-------------~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~  306 (745)
                      .+.|++.  +..+.             ..++.....   .+|.|.+++.+|+|.|.|.+.+..... .....|.|..
T Consensus       173 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~  249 (257)
T 3gkz_A          173 HLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR  249 (257)
T ss_dssp             GEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence            8999983  22111             134433322   259999999999999999998654322 2334555554

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.69  E-value=2.2e-16  Score=154.88  Aligned_cols=173  Identities=15%  Similarity=0.211  Sum_probs=119.4

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--Eec--------------C---CCCCeEecc---CCcEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VPI--------------N---PSDRISQGN---YGKSLI   90 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~i--------------~---~~~~~~~~~---~~~~L~   90 (745)
                      ...+...|..+.+.+|++++|.|.+.+.+.+.+.|+|++  ..+              .   ...|+.+..   ...+|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            344567788899999999999999988888899999853  111              0   124555432   234899


Q ss_pred             EccCCCCCCEEEEEEEEeCCe-----eeEEEEEEEEEEe------cCeEEec-CceeEeeCCCeEEEEEEEeec-CC-Ce
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVG-----EAKSYSIDLSVLA------APYFTVE-PEFINAAEEETVTFECKASGL-PE-PE  156 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g-----~~~~~~~~l~V~~------~p~~~~~-~~~~~v~~G~~~~l~C~~~~~-p~-~~  156 (745)
                      |.+++.+|+|.|+|.+.+..+     ......+.|.|..      +|.+... +....+.+|+.++|.|.+.+. |. +.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            999999999999999998421     1112234667764      5655443 344445679999999999985 54 69


Q ss_pred             EEEEeCCEeccCCCCCC------------ceeecCceEEEccCCCCC-CEEEEEEEEeCCce
Q psy11701        157 IHWVHNGKPISQAPPNP------------RRKVGPNRITIENLRKSD-TGNYGCNATNSLGY  205 (745)
Q Consensus       157 v~W~~~g~~~~~~~~~~------------~~~~~~~~L~i~~v~~~d-~G~Y~C~~~~~~g~  205 (745)
                      ++|++||+.+.......            ......+.|.|.+....| .|.|+|.|.|....
T Consensus       184 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          184 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             EEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            99999999886432110            001112347887777754 77899999997643

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.69  E-value=6.4e-17  Score=155.26  Aligned_cols=169  Identities=14%  Similarity=0.181  Sum_probs=103.0

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Eec------C-----------CCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VPI------N-----------PSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~i------~-----------~~~~~~~~~----~~~~L~   90 (745)
                      .+.+|....+.+|++++|.|.+.+.+  .+.+.|+|..  ..+      .           ...|+.+..    ...+|.
T Consensus         3 ~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (257)
T 3bn9_D            3 QLVQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQ   82 (257)
T ss_dssp             EEEEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEEccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEE
Confidence            34566778899999999999998765  5789999842  211      0           124555432    234899


Q ss_pred             EccCCCCCCEEEEEEEEeCCe----------e--eEEEEEEEEEEe----cCeEEecCceeEeeCCCeEEEEEEEeec-C
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVG----------E--AKSYSIDLSVLA----APYFTVEPEFINAAEEETVTFECKASGL-P  153 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g----------~--~~~~~~~l~V~~----~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p  153 (745)
                      |.+++.+|+|.|.|.+.+..|          .  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P  162 (257)
T 3bn9_D           83 MSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  162 (257)
T ss_dssp             EESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBS
T ss_pred             ECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEEC
Confidence            999999999999999998654          1  112335677764    4655544333346789999999999885 7


Q ss_pred             CC-eEEEEeCCEeccCCCCCCceee------cCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701        154 EP-EIHWVHNGKPISQAPPNPRRKV------GPNRITIENLRKSDTGNYGCNATNSLGYV  206 (745)
Q Consensus       154 ~~-~v~W~~~g~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~  206 (745)
                      .+ .+.|++++..+... .......      ..+.|.|.++..+| |.|+|.|.|.....
T Consensus       163 ~pi~v~W~k~g~~~~~~-~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~  220 (257)
T 3bn9_D          163 EPVTVSWNSGALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  220 (257)
T ss_dssp             SCCEEEETTTTCCSSCE-ECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTE
T ss_pred             CCcEEEEeeCCCcCCcE-ecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence            76 99999998764321 1111111      12357888888778 99999999976543

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.69  E-value=1.2e-16  Score=153.20  Aligned_cols=165  Identities=19%  Similarity=0.302  Sum_probs=117.7

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeecC----CCeEEEEeCC--Eec---cC------CCCCCceee----cCceEEEccC
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGLP----EPEIHWVHNG--KPI---SQ------APPNPRRKV----GPNRITIENL  187 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~g--~~~---~~------~~~~~~~~~----~~~~L~i~~v  187 (745)
                      .+...|....+.+|++++|.|.+.+.|    .+.+.|+|++  ..+   ..      .....++..    ....|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence            345667788899999999999999887    6799999952  211   10      001122222    1237999999


Q ss_pred             CCCCCEEEEEEEEeCCce-EEEEEEEEEeec-----CCeeeeCCCceEEecCceEEEEEEEeecCC--CeEEEeeC--CE
Q psy11701        188 RKSDTGNYGCNATNSLGY-VYKDVYVNVLAH-----APEITEAPKDEYTVDGKTVVLTCRVFGAPK--PEVNWIHN--QK  257 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g~-~~~~~~l~v~~~-----~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~--~~i~W~~~--~~  257 (745)
                      +.+|+|.|+|.+.|..+. ....+.|.|...     ++.+...+....+.+|++++|.|.+.+.|.  +.+.|+++  +.
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~  162 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ  162 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred             ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence            999999999999987654 233456777643     223445567778999999999999998864  58999995  22


Q ss_pred             Ec------------------cCceEEEeec-----CcEEEcccCCCCCEEEEEEEEe
Q psy11701        258 EL------------------TGGRYTILET-----GDLKITDVAFADSGEYTCFARN  291 (745)
Q Consensus       258 ~~------------------~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~n  291 (745)
                      .+                  ...++....+     ..|.|.+++.+|+|.|.|.|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          163 GLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            11                  1234544332     3699999999999999999984

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.69  E-value=1.2e-16  Score=151.00  Aligned_cols=169  Identities=13%  Similarity=0.215  Sum_probs=115.1

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEECC--Eec------C-------------CCCCeEecc----CCcE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKDG--VPI------N-------------PSDRISQGN----YGKS   88 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~~--~~i------~-------------~~~~~~~~~----~~~~   88 (745)
                      .+..|..+.+.+|++|+|.|.+.+.+  .+.+.|+|..  ..+      .             ...|+.+..    ...+
T Consensus         3 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (221)
T 3m8o_H            3 QLVESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAF   82 (221)
T ss_dssp             EEEEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEE
T ss_pred             eEEccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEE
Confidence            34566778899999999999998743  5689999732  111      0             124555432    2237


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCe-eeEEEEEEEEEE----ecCeEE-ecCceeEeeCCCeEEEEEEEee-cCC--CeEEE
Q psy11701         89 LIIKHVEFSDQGSYTCEVSNGVG-EAKSYSIDLSVL----AAPYFT-VEPEFINAAEEETVTFECKASG-LPE--PEIHW  159 (745)
Q Consensus        89 L~i~~~~~~d~G~Y~C~~~~~~g-~~~~~~~~l~V~----~~p~~~-~~~~~~~v~~G~~~~l~C~~~~-~p~--~~v~W  159 (745)
                      |.|.+++.+|+|.|.|.+.+... ........|.|.    .+|.+. ..+...  .+|+.++|.|.+.+ .|.  +.+.|
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W  160 (221)
T 3m8o_H           83 LQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTW  160 (221)
T ss_dssp             EEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEE
T ss_pred             EEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEE
Confidence            99999999999999999987531 112233456664    345554 233333  78999999999988 676  49999


Q ss_pred             EeCCEeccCCCCC------CceeecCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701        160 VHNGKPISQAPPN------PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV  206 (745)
Q Consensus       160 ~~~g~~~~~~~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~  206 (745)
                      +++|..+......      .......+.|.|..+..+|+|.|+|.|.+..+..
T Consensus       161 ~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          161 SESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             SCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            9999776321111      0111112469999999999999999999987543

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.69  E-value=1.9e-16  Score=152.42  Aligned_cols=169  Identities=17%  Similarity=0.323  Sum_probs=118.9

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe----------------CCEeccCCCCCCceee-----cCceEEEc
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH----------------NGKPISQAPPNPRRKV-----GPNRITIE  185 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~----------------~g~~~~~~~~~~~~~~-----~~~~L~i~  185 (745)
                      .+...|....+.+|++++|.|.+.+.+.+.+.|+|                ++..........++..     ....|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence            35566778889999999999999998889999999                3333322222223322     23479999


Q ss_pred             cCCCCCCEEEEEEEEeCCc----eEEEEEEEEEee-----cCCeee-eCCCceEEecCceEEEEEEEeecCCC--eEEEe
Q psy11701        186 NLRKSDTGNYGCNATNSLG----YVYKDVYVNVLA-----HAPEIT-EAPKDEYTVDGKTVVLTCRVFGAPKP--EVNWI  253 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g----~~~~~~~l~v~~-----~~p~~~-~~~~~~~v~~g~~~~l~C~~~~~p~~--~i~W~  253 (745)
                      +++.+|+|.|+|.+.+..+    .......|.|..     .+|.+. ..+....+.+|+.++|.|.+.+.+++  .+.|+
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  162 (246)
T 4dzb_B           83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  162 (246)
T ss_dssp             SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEE
Confidence            9999999999999987643    122334566653     345543 34445556679999999999987654  89999


Q ss_pred             eCCEEccCceEEEe---------ecC------cEEEcccCCCC-CEEEEEEEEeCCce
Q psy11701        254 HNQKELTGGRYTIL---------ETG------DLKITDVAFAD-SGEYTCFARNKLGT  295 (745)
Q Consensus       254 ~~~~~~~~~~~~~~---------~~~------~l~i~~~~~~d-~G~Y~C~~~n~~g~  295 (745)
                      +++..+........         .++      .|.|.....+| .|.|+|.|.|....
T Consensus       163 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          163 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            99988764322211         122      37888887778 99999999987544

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.69  E-value=2.2e-16  Score=152.65  Aligned_cols=179  Identities=20%  Similarity=0.288  Sum_probs=123.4

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCC--Ee---ccCC-------CCCCceee------cCceEEEccCC
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG--KP---ISQA-------PPNPRRKV------GPNRITIENLR  188 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g--~~---~~~~-------~~~~~~~~------~~~~L~i~~v~  188 (745)
                      .+...|....+.+|++++|.|.+.+.|.+.+.|+|..  ..   +...       ....++..      ....|.|.+++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            4556677889999999999999999899999999832  11   1000       00112221      23479999999


Q ss_pred             CCCCEEEEEEEEeCCce----EEEEEEEEEee-------------------cCCeeeeCCCceEEecCceEEEEEEEeec
Q psy11701        189 KSDTGNYGCNATNSLGY----VYKDVYVNVLA-------------------HAPEITEAPKDEYTVDGKTVVLTCRVFGA  245 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~----~~~~~~l~v~~-------------------~~p~~~~~~~~~~v~~g~~~~l~C~~~~~  245 (745)
                      .+|+|.|+|.+.+..+.    ......|.|..                   .+|.+...|....+.+|++++|.|.+.+.
T Consensus        85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  164 (256)
T 3tf7_C           85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS  164 (256)
T ss_dssp             GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC
T ss_pred             cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC
Confidence            99999999999987541    12234566654                   35677788888889999999999999876


Q ss_pred             CCCeEEEeeCC--EEc---c-------------CceEEEe----ecCcEEEcccCCCCCEEEEEEEEeCCceEE--EEEE
Q psy11701        246 PKPEVNWIHNQ--KEL---T-------------GGRYTIL----ETGDLKITDVAFADSGEYTCFARNKLGTAQ--GSGS  301 (745)
Q Consensus       246 p~~~i~W~~~~--~~~---~-------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~--~~~~  301 (745)
                       .+.+.|++..  ..+   .             ..++...    ...+|.|.+++.+|+|.|+|.|.|..|...  ....
T Consensus       165 -~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~  243 (256)
T 3tf7_C          165 -HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSK  243 (256)
T ss_dssp             -CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEE
T ss_pred             -ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeE
Confidence             6789999832  111   0             1222221    123699999999999999999998766532  2344


Q ss_pred             EEEee
Q psy11701        302 LTVKE  306 (745)
Q Consensus       302 l~v~~  306 (745)
                      |.|..
T Consensus       244 l~v~~  248 (256)
T 3tf7_C          244 LTVLE  248 (256)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            55543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.68  E-value=6.5e-16  Score=139.21  Aligned_cols=155  Identities=18%  Similarity=0.232  Sum_probs=112.0

Q ss_pred             ceeEeeCCCeEEEEEEEe--ecCCCeEEEEe--CCEeccCC-------CCCCce-eecCceEEEccCCCCCCEEEEEEEE
Q psy11701        133 EFINAAEEETVTFECKAS--GLPEPEIHWVH--NGKPISQA-------PPNPRR-KVGPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~--~~p~~~v~W~~--~g~~~~~~-------~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      ......+|++++|.|...  +.+.+.|.|+|  ++..+...       ....+. ...+++|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~   86 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY   86 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEE
Confidence            445678999999999542  34567999999  88776210       012233 2356799999999999999999999


Q ss_pred             eCCceEE--EEEEEEEeec--CCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcc
Q psy11701        201 NSLGYVY--KDVYVNVLAH--APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITD  276 (745)
Q Consensus       201 ~~~g~~~--~~~~l~v~~~--~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~  276 (745)
                      |..|...  ..+.|.|...  .|.+..        .+..++|.|.+.+.|.+.+.|++++..+. .     ....|.+..
T Consensus        87 n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l~-~-----~~~~i~~~~  152 (182)
T 1hnf_A           87 DTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHLK-L-----SQRVITHKW  152 (182)
T ss_dssp             ETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEEE-E-----ESSCEEEEC
T ss_pred             eCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEECC-C-----CCcEEEEec
Confidence            9887654  3566777642  233322        34479999999988888999999998771 1     233454433


Q ss_pred             cCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        277 VAFADSGEYTCFARNKLGTAQGSGSL  302 (745)
Q Consensus       277 ~~~~d~G~Y~C~~~n~~g~~~~~~~l  302 (745)
                       ...|+|.|+|.|.|..+.......+
T Consensus       153 -~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          153 -TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             -CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             -ccCCCcEEEEEEEeCCCCcEEccee
Confidence             4689999999999999987766554

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.68  E-value=5.3e-16  Score=145.79  Aligned_cols=182  Identities=20%  Similarity=0.275  Sum_probs=135.8

Q ss_pred             eecCCeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCc---eEEEee---cCcEEEcccCCCCCEEEEEE
Q psy11701        215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG---RYTILE---TGDLKITDVAFADSGEYTCF  288 (745)
Q Consensus       215 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~---~~~l~i~~~~~~d~G~Y~C~  288 (745)
                      ...+|.| ..|....+.+|+.++|.|.+.+.|.+.+.|++++..+...   ++.+..   .+.|.|.++...|.|.|+|.
T Consensus        16 ~~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   94 (215)
T 3mtr_A           16 HMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCT   94 (215)
T ss_dssp             CCEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEE
T ss_pred             eecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEE
Confidence            3346677 4666788999999999999999999999999999988643   344432   35799999999999999999


Q ss_pred             EEeCCceEEEEEEEEEeecceeecCCCcEEE-ecCCeEEEEEEEEe----cCCCCcEEEEeeCCeeccCCCCCeEEEc--
Q psy11701        289 ARNKLGTAQGSGSLTVKEHTHITDQPEDYEV-EAGQSATFRCNAVS----DPSLKLSIVWLRGSEPIDFESEPRFVQS--  361 (745)
Q Consensus       289 ~~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~-~~g~~~~l~C~~~~----~~~~~~~i~W~~~~~~~~~~~~~~~~~~--  361 (745)
                      |.|..|.....+.|.|..+|..   |....+ ..+..+.|.|....    .+...+.+.|.+++.....  .......  
T Consensus        95 a~n~~g~~~~~~~l~v~~~P~~---p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~--~~~~~~~~~  169 (215)
T 3mtr_A           95 AVNRIGQESLEFILVQADTPSS---PSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH--SKWYDAKEA  169 (215)
T ss_dssp             EECSSCEEEEEEEEEECCCCCC---CEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE--EEEEEHHHH
T ss_pred             EEECCCceEEEEEEEECCCCCC---CcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc--ccccccccc
Confidence            9999999988899998876643   333322 45678899997432    2332356889887754221  0111111  


Q ss_pred             -CCeEEEEecCCCCCCEEEEEEEEeCCceEEEEEEEEEeccC
Q psy11701        362 -NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPL  402 (745)
Q Consensus       362 -~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~l~v~~pp  402 (745)
                       ....+.|.++...+.|.|+|.|.|..|.+..+..+.++.+|
T Consensus       170 ~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             HHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             cccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence             12679999999999999999999999988777777777665

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.68  E-value=3e-16  Score=150.19  Aligned_cols=171  Identities=18%  Similarity=0.288  Sum_probs=119.9

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCC--Eec---c------CCCCCCceee----cCceEEEccCCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG--KPI---S------QAPPNPRRKV----GPNRITIENLRK  189 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g--~~~---~------~~~~~~~~~~----~~~~L~i~~v~~  189 (745)
                      .+.+...|....+.+|++++|.|.+.+.+.+.+.|+|++  ...   .      ......++..    .+..|.|.+++.
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            344566678889999999999999998888899999842  110   0      0011122222    345799999999


Q ss_pred             CCCEEEEEEEEeCCceEE-EEEEEEE--eecCCeeeeCCCceEEecCceEEEEEEEeec-C-CCeEEEeeCCEEccCceE
Q psy11701        190 SDTGNYGCNATNSLGYVY-KDVYVNV--LAHAPEITEAPKDEYTVDGKTVVLTCRVFGA-P-KPEVNWIHNQKELTGGRY  264 (745)
Q Consensus       190 ~d~G~Y~C~~~~~~g~~~-~~~~l~v--~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~  264 (745)
                      +|+|.|+|.+.+..+... ....+.|  ...+|.+...+....+..|+.++|.|.+.+. | .+.+.|++++..+..+..
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~  183 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ  183 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCcee
Confidence            999999999988765322 2234444  2346666655555555568899999999884 4 479999999988764320


Q ss_pred             ---EE--------eecCcEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        265 ---TI--------LETGDLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       265 ---~~--------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                         ..        .....|.|.....+|.|.|+|.|.|....
T Consensus       184 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          184 ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             ecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence               00        11234888889889999999999998654

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.68  E-value=5.1e-16  Score=146.93  Aligned_cols=179  Identities=18%  Similarity=0.251  Sum_probs=116.8

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Eecc------C--------CCCCCceee------cCceEEEc
Q psy11701        130 VEPEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KPIS------Q--------APPNPRRKV------GPNRITIE  185 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~~~------~--------~~~~~~~~~------~~~~L~i~  185 (745)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+|++  ..+.      .        .....++..      ....|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (227)
T 1mju_H            5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (227)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence            346677899999999999998866  5799999853  2110      0        001223322      23589999


Q ss_pred             cCCCCCCEEEEEEEEeCCceE-EEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-eEEEeeCCEEc
Q psy11701        186 NLRKSDTGNYGCNATNSLGYV-YKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNWIHNQKEL  259 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g~~-~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~  259 (745)
                      +++.+|+|.|.|.+.+..+.. .....|.|..   .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H           85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence            999999999999999864322 1235677764   24555433323346689999999999986 666 99999988754


Q ss_pred             c---CceEE----EeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecce
Q psy11701        260 T---GGRYT----ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTH  309 (745)
Q Consensus       260 ~---~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~  309 (745)
                      .   .....    ....+.|.|..+..+| |.|+|.|.|..+.......+.+..+|.
T Consensus       165 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~  220 (227)
T 1mju_H          165 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTI  220 (227)
T ss_dssp             TEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC--
T ss_pred             CcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCC
Confidence            2   11110    1123468999988877 999999999877766666666666553

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.68  E-value=2.3e-17  Score=154.82  Aligned_cols=164  Identities=21%  Similarity=0.311  Sum_probs=116.5

Q ss_pred             CceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc---------CCCCCCceee----cCceEEEccCCCCCCEEEE
Q psy11701        132 PEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS---------QAPPNPRRKV----GPNRITIENLRKSDTGNYG  196 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~---------~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~  196 (745)
                      |....+.+|++++|.|.+.+.|.+.+.|+|+  |..+.         ......++..    ....|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            7788899999999999998877778999984  33221         0011123222    2348999999999999999


Q ss_pred             EEEEeC-CceE--EEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CC-CeEEEeeCCEEccCceEE---
Q psy11701        197 CNATNS-LGYV--YKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PK-PEVNWIHNQKELTGGRYT---  265 (745)
Q Consensus       197 C~~~~~-~g~~--~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~---  265 (745)
                      |.+.|. .+..  .....+.|..   .+|.+...+....+.+|+.++|.|.+.+. |. +.+.|++++..+......   
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  165 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP  165 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCc
Confidence            999973 2221  1224555532   45667665555555679999999999987 54 699999999887533110   


Q ss_pred             ------EeecCcEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        266 ------ILETGDLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       266 ------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                            ....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       166 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          166 SKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             BCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             eecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence                  111245889999999999999999998765

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.67  E-value=8.4e-16  Score=150.88  Aligned_cols=177  Identities=19%  Similarity=0.354  Sum_probs=122.4

Q ss_pred             EecCceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Eecc--------------CCCCCCceee------cCceEEE
Q psy11701        129 TVEPEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KPIS--------------QAPPNPRRKV------GPNRITI  184 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~~~--------------~~~~~~~~~~------~~~~L~i  184 (745)
                      ...|....+.+|++++|.|.+.+.+  .+.+.|+|++  ..+.              ......++..      ....|.|
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  109 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL  109 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence            3456677899999999999998865  5799999953  1110              0001123322      1257999


Q ss_pred             ccCCCCCCEEEEEEEEeCCc---eEE--EEEEEEEeec--------------CCeeeeCCCceEEecCceEEEEEEEeec
Q psy11701        185 ENLRKSDTGNYGCNATNSLG---YVY--KDVYVNVLAH--------------APEITEAPKDEYTVDGKTVVLTCRVFGA  245 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g---~~~--~~~~l~v~~~--------------~p~~~~~~~~~~v~~g~~~~l~C~~~~~  245 (745)
                      .+++.+|+|.|+|.+.|..|   ...  ..+.|.|...              ++.+...|....+.+|++++|.|.+.+.
T Consensus       110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  189 (282)
T 1qok_A          110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSS  189 (282)
T ss_dssp             CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred             CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCC
Confidence            99999999999999999865   111  2346666643              2445566777789999999999999998


Q ss_pred             CCCeEEEee--CCEEcc-------------CceEEEee---cCcEEEcccCCCCCEEEEEEEEeCCce-EEEEEEEEEee
Q psy11701        246 PKPEVNWIH--NQKELT-------------GGRYTILE---TGDLKITDVAFADSGEYTCFARNKLGT-AQGSGSLTVKE  306 (745)
Q Consensus       246 p~~~i~W~~--~~~~~~-------------~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~  306 (745)
                      + +.+.|++  ++..+.             ..++....   ..+|.|.+++.+|+|.|.|.+.+.... ......|.|..
T Consensus       190 ~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          190 V-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             C-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             C-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence            8 8999999  554331             23444332   236999999999999999999875332 22345566643

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.67  E-value=5.4e-16  Score=145.90  Aligned_cols=164  Identities=16%  Similarity=0.276  Sum_probs=113.2

Q ss_pred             CceeEeeCCCeEEEEEEE-eecC-CCeEEEEeCC--Eecc---------CCCCCCceee----cCceEEEccCCCCCCEE
Q psy11701        132 PEFINAAEEETVTFECKA-SGLP-EPEIHWVHNG--KPIS---------QAPPNPRRKV----GPNRITIENLRKSDTGN  194 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~-~~~p-~~~v~W~~~g--~~~~---------~~~~~~~~~~----~~~~L~i~~v~~~d~G~  194 (745)
                      |....+.+|++++|.|.+ .+.+ .+.+.|+|++  ..+.         ......++..    ....|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            677889999999999995 4432 5799999953  2210         0111123322    23479999999999999


Q ss_pred             EEEEEEeCCc-e-EEEEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-eEEEeeCCEEccCc-eEEE-
Q psy11701        195 YGCNATNSLG-Y-VYKDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNWIHNQKELTGG-RYTI-  266 (745)
Q Consensus       195 Y~C~~~~~~g-~-~~~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~-~~~~-  266 (745)
                      |+|.+.|..+ . ......|.|..  .+|.+...+.......|+.++|.|.+.+. |.+ .+.|++++..+... .... 
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~  166 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT  166 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence            9999999876 1 22234555542  35666654433333468999999999984 554 89999999987655 1111 


Q ss_pred             -e--ec------CcEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        267 -L--ET------GDLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       267 -~--~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                       .  .+      ..|.|..+..+|+|.|+|.|.|....
T Consensus       167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          167 EQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence             1  11      25889999999999999999997644

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.67  E-value=2.5e-16  Score=153.82  Aligned_cols=171  Identities=22%  Similarity=0.278  Sum_probs=117.2

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEec------------CCC---C-CeEecc---CCcEEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPI------------NPS---D-RISQGN---YGKSLII   91 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i------------~~~---~-~~~~~~---~~~~L~i   91 (745)
                      ...+...|..+.+.+|++++|.|.+.+ +.+.+.|+|.  +..+            ...   + |+.+..   ...+|.|
T Consensus        27 ~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I  105 (270)
T 3qib_D           27 GMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEI  105 (270)
T ss_dssp             -CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEE
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEE
Confidence            445667788899999999999999865 6779999982  2111            000   0 444322   2458999


Q ss_pred             ccCCCCCCEEEEEEEEeCC---eeeEEEEEEEEEEe------cCeEEe-cCceeEeeCCCeEEEEEEEee-cCCC-eEEE
Q psy11701         92 KHVEFSDQGSYTCEVSNGV---GEAKSYSIDLSVLA------APYFTV-EPEFINAAEEETVTFECKASG-LPEP-EIHW  159 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~---g~~~~~~~~l~V~~------~p~~~~-~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W  159 (745)
                      .+++.+|+|.|+|.+.+..   .......+.|.|..      +|.+.. .+....+.+|+.++|.|.+.+ .|.+ .+.|
T Consensus       106 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W  185 (270)
T 3qib_D          106 QSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  185 (270)
T ss_dssp             SSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEE
Confidence            9999999999999998632   11222335677765      565443 344445667999999999988 6666 8999


Q ss_pred             EeCCEeccCCCCC------------CceeecCceEEEccCCCCC-CEEEEEEEEeCCc
Q psy11701        160 VHNGKPISQAPPN------------PRRKVGPNRITIENLRKSD-TGNYGCNATNSLG  204 (745)
Q Consensus       160 ~~~g~~~~~~~~~------------~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~~~~g  204 (745)
                      +|+|..+......            .........|.|.....+| +|.|+|.|.|...
T Consensus       186 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l  243 (270)
T 3qib_D          186 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  243 (270)
T ss_dssp             EETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCB
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCC
Confidence            9999988642211            0111112457888887777 9999999998754

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.67  E-value=5.6e-16  Score=149.18  Aligned_cols=166  Identities=16%  Similarity=0.311  Sum_probs=114.5

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeecC-----CCeEEEEeCC--Ee---ccC------CCCCCceee----cCceEEEcc
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGLP-----EPEIHWVHNG--KP---ISQ------APPNPRRKV----GPNRITIEN  186 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~p-----~~~v~W~~~g--~~---~~~------~~~~~~~~~----~~~~L~i~~  186 (745)
                      .+...|....+.+|++++|.|.+.+.+     .+.+.|+|++  ..   +..      .....++..    ....|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   82 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   82 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence            345567888899999999999998877     6899999842  21   110      001123222    234799999


Q ss_pred             CCCCCCEEEEEEEEeCCceEE-EEEEEEEeec------------CCeeeeCCCceEEecCceEEEEEEEeecC--CCeEE
Q psy11701        187 LRKSDTGNYGCNATNSLGYVY-KDVYVNVLAH------------APEITEAPKDEYTVDGKTVVLTCRVFGAP--KPEVN  251 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g~~~-~~~~l~v~~~------------~p~~~~~~~~~~v~~g~~~~l~C~~~~~p--~~~i~  251 (745)
                      ++.+|+|.|+|.+.|..+... ..+.|.|...            ++.....+....+.+|++++|.|.+.+.+  .+.+.
T Consensus        83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  162 (247)
T 1svz_A           83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMH  162 (247)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEE
T ss_pred             CCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEE
Confidence            999999999999998755322 2356666542            22233334445688999999999998875  46899


Q ss_pred             EeeCC--EEc------------------cCceEEEee-----cCcEEEcccCCCCCEEEEEEEEeC
Q psy11701        252 WIHNQ--KEL------------------TGGRYTILE-----TGDLKITDVAFADSGEYTCFARNK  292 (745)
Q Consensus       252 W~~~~--~~~------------------~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~n~  292 (745)
                      |++++  ..+                  ...++....     ...|.|.+++.+|+|.|.|.+.|.
T Consensus       163 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          163 WVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99853  111                  134554432     137999999999999999999985

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.67  E-value=4.6e-16  Score=150.88  Aligned_cols=167  Identities=19%  Similarity=0.266  Sum_probs=108.6

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEe---ccC-----------CCCC-Cce-----eecCceE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKP---ISQ-----------APPN-PRR-----KVGPNRI  182 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~---~~~-----------~~~~-~~~-----~~~~~~L  182 (745)
                      +|.+...|....+.+|++++|.|.+.+.+.+.+.|+|.  +..   +..           .... ...     ......|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            35566677888999999999999999888889999982  111   100           0000 111     1134579


Q ss_pred             EEccCCCCCCEEEEEEEEeCCc---eEEEEEEEEEeec----------------CCeeeeCCCceEEecCceEEEEEEEe
Q psy11701        183 TIENLRKSDTGNYGCNATNSLG---YVYKDVYVNVLAH----------------APEITEAPKDEYTVDGKTVVLTCRVF  243 (745)
Q Consensus       183 ~i~~v~~~d~G~Y~C~~~~~~g---~~~~~~~l~v~~~----------------~p~~~~~~~~~~v~~g~~~~l~C~~~  243 (745)
                      .|.+++.+|+|.|+|.+.+..+   .......|.|...                ++.+...+....+.+|++++|.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            9999999999999999998765   2223356666643                35677778888999999999999988


Q ss_pred             ec-CCCeEEEeeCCE--Ec-------------cCceEEEee-----cCcEEEcccCCCCCEEEEEEEEe
Q psy11701        244 GA-PKPEVNWIHNQK--EL-------------TGGRYTILE-----TGDLKITDVAFADSGEYTCFARN  291 (745)
Q Consensus       244 ~~-p~~~i~W~~~~~--~~-------------~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~n  291 (745)
                      +. +.+.+.|++...  .+             ...++....     ...|.|.+++.+|+|.|.|.+.+
T Consensus       162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            75 677999998431  11             123444432     23599999999999999999974

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.67  E-value=3.4e-16  Score=140.18  Aligned_cols=151  Identities=19%  Similarity=0.251  Sum_probs=108.6

Q ss_pred             eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCC---------CCCceee--cCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP---------PNPRRKV--GPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~---------~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      ...+.+|++++|.|.+.+ |.+.+.|+|++..+....         ...+...  .+++|.|.+++.+|+|.|+|.+.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            456789999999999854 788999999987543110         1123333  4679999999999999999999988


Q ss_pred             CceEEEEEEEEEeecC--CeeeeCCCceEEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCC
Q psy11701        203 LGYVYKDVYVNVLAHA--PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFA  280 (745)
Q Consensus       203 ~g~~~~~~~l~v~~~~--p~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~  280 (745)
                      .|  ...+.|.|...+  |.+....        ...+|.|.+.+.|.+.+.|++++..+...     ....|.+.  ...
T Consensus        83 ~~--~~~~~L~V~~~~~~p~i~~~~--------~~~~L~C~~~~~p~p~i~W~~~~~~l~~~-----~~~~l~~~--~~~  145 (171)
T 1ccz_A           83 TD--TMKFFLYVLEMVSKPMIYWEC--------SNATLTCEVLEGTDVELKLYQGKEHLRSL-----RQKTMSYQ--WTN  145 (171)
T ss_dssp             CS--CEEEEEEEECCCCCCEEEEET--------TTTEEEEECSSCSSCEEEEEETTEEEEEE-----SSSEEEEE--CSC
T ss_pred             CC--cEEEEEEEECcCCCCEEEEec--------CCcEEEEEeCCCCCcEEEEEECCEECcCC-----cceEEEEe--ccC
Confidence            77  556677776422  2332211        11389999998888999999999876521     11234333  367


Q ss_pred             CCEEEEEEEEeCCceEEEEEEE
Q psy11701        281 DSGEYTCFARNKLGTAQGSGSL  302 (745)
Q Consensus       281 d~G~Y~C~~~n~~g~~~~~~~l  302 (745)
                      |.|.|+|.|.|..+..+..+.|
T Consensus       146 ~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          146 LRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             CSSCEEEEEEETTEEEEEEECC
T ss_pred             CCceEEEEEEcccCcccceeEE
Confidence            8999999999999887665544

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.67  E-value=7.2e-16  Score=147.66  Aligned_cols=166  Identities=19%  Similarity=0.291  Sum_probs=114.7

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCC--Ee---ccC------CCCCCceee----cCceEEEccCCCCC
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG--KP---ISQ------APPNPRRKV----GPNRITIENLRKSD  191 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g--~~---~~~------~~~~~~~~~----~~~~L~i~~v~~~d  191 (745)
                      .+...|....+.+|++++|.|.+.+.|.+.+.|+|+.  ..   +..      .....++..    ....|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence            3556678889999999999999999888899999953  11   100      001223322    23479999999999


Q ss_pred             CEEEEEEEEeCCceEE-EEEEEEEeecC------------CeeeeCCCceEEecCceEEEEEEEeecC--CCeEEEeeCC
Q psy11701        192 TGNYGCNATNSLGYVY-KDVYVNVLAHA------------PEITEAPKDEYTVDGKTVVLTCRVFGAP--KPEVNWIHNQ  256 (745)
Q Consensus       192 ~G~Y~C~~~~~~g~~~-~~~~l~v~~~~------------p~~~~~~~~~~v~~g~~~~l~C~~~~~p--~~~i~W~~~~  256 (745)
                      +|.|.|.+.|..+... ....|.|...+            +.....+....+.+|++++|.|.+.+.+  .+.+.|++++
T Consensus        83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~  162 (242)
T 2znx_A           83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKF  162 (242)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeC
Confidence            9999999998754322 23466665422            1123333345688999999999998875  4689999842


Q ss_pred             --EEc-----------------cCceEEEeec-----CcEEEcccCCCCCEEEEEEEEeC
Q psy11701        257 --KEL-----------------TGGRYTILET-----GDLKITDVAFADSGEYTCFARNK  292 (745)
Q Consensus       257 --~~~-----------------~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~n~  292 (745)
                        ..+                 ...++....+     .+|.|.+++.+|+|.|.|.|.|.
T Consensus       163 ~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          163 PGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             TTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence              211                 1344554322     37999999999999999999873

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.66  E-value=1.9e-15  Score=136.59  Aligned_cols=154  Identities=17%  Similarity=0.212  Sum_probs=109.2

Q ss_pred             ceeEeeCCCeEEEEEEEee-cCCCeEEEEeC-CEecc-----------CCCCCCceee--cCceEEEccCCCCCCEEEEE
Q psy11701        133 EFINAAEEETVTFECKASG-LPEPEIHWVHN-GKPIS-----------QAPPNPRRKV--GPNRITIENLRKSDTGNYGC  197 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~-g~~~~-----------~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C  197 (745)
                      ....+.+|++++|.|.+.+ .+.+.|.|+|+ +..+.           ......+...  .+++|.|.+++.+|+|.|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            4567899999999999854 34679999994 33221           0111234443  56789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEeecCCeeeeCCCceEEecCceEEEEEEE-eecCCCeEEEeeCCEEccCceEEEeecCcEEEcc
Q psy11701        198 NATNSLGYVYKDVYVNVLAHAPEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELTGGRYTILETGDLKITD  276 (745)
Q Consensus       198 ~~~~~~g~~~~~~~l~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~  276 (745)
                      .+.+.. .....+.|.|...++.      ......+++++|.|.+ .+ |.+.+.|++++..+.     .....+|.+..
T Consensus        87 ~v~~~~-~~~~~~~L~V~~~~~~------P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-----~~~~~~l~~~~  153 (180)
T 2dru_A           87 RMLHET-EDQWKITMEVYEMVSK------PMIYWECSNATLTCEVLEG-TDVELKLYQGKEHLR-----SLRQKTMSYQW  153 (180)
T ss_dssp             EEESSS-EEEEEEEEEEECCCCC------CEEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE-----EESSSEEEEEC
T ss_pred             EEEcCC-eEEEEEEEEEECCCCC------CEEEecCCCEEEEEEeCCC-CCCEEEEEECCeECc-----CCCCCEEEEEE
Confidence            998776 5566677888642211      1111245679999999 55 889999999998775     12234566533


Q ss_pred             cCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        277 VAFADSGEYTCFARNKLGTAQGSGS  301 (745)
Q Consensus       277 ~~~~d~G~Y~C~~~n~~g~~~~~~~  301 (745)
                        .+|+|.|+|.|.|..+.......
T Consensus       154 --~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          154 --TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             --SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             --hhcCccEEEEEecCcCcccccee
Confidence              68999999999999987765543

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.66  E-value=1.6e-16  Score=148.12  Aligned_cols=164  Identities=14%  Similarity=0.228  Sum_probs=111.1

Q ss_pred             ecCceeE-eeCCCeEEEEEEEeecC---C-CeEEEEeCCEeccCCCCC------CceeecCceEEEccCCCCCCEEEEEE
Q psy11701        130 VEPEFIN-AAEEETVTFECKASGLP---E-PEIHWVHNGKPISQAPPN------PRRKVGPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       130 ~~~~~~~-v~~G~~~~l~C~~~~~p---~-~~v~W~~~g~~~~~~~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      ..|.... +.+|++++|.|.+.|.+   . ..+.|+|++..+......      .......+.|.|.+++.+|+|.|+|.
T Consensus         7 ~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   86 (207)
T 2vol_A            7 FPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCR   86 (207)
T ss_dssp             ECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             eCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEE
Confidence            3444444 78999999999999874   3 499999999776532100      01111235799999999999999999


Q ss_pred             EEeCCceEE--EEEEE--EEeecCCeeeeCCCceEEecCceEEEEEEEeec-CC-CeEEEeeCCEEccCceE---EEeec
Q psy11701        199 ATNSLGYVY--KDVYV--NVLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA-PK-PEVNWIHNQKELTGGRY---TILET  269 (745)
Q Consensus       199 ~~~~~g~~~--~~~~l--~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~---~~~~~  269 (745)
                      |.|..+...  ..+.+  .+ ..+|.+...+.......|+.++|.|.+.+. |. +.+.|++++..+.....   ....+
T Consensus        87 a~~~~~~~~~~~~v~~~~~~-~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~  165 (207)
T 2vol_A           87 VNSAAFPAPIEKTISKTKGR-PKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTD  165 (207)
T ss_dssp             EECTTCSSCEEEEECCCCCC-CBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTT
T ss_pred             EEccCCCCceEEEeccCCCC-CcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCC
Confidence            999877532  22222  22 246766554443333469999999999985 44 38999999988754321   22333


Q ss_pred             Cc------EEEcccCCCCCEEEEEEEEeCCc
Q psy11701        270 GD------LKITDVAFADSGEYTCFARNKLG  294 (745)
Q Consensus       270 ~~------l~i~~~~~~d~G~Y~C~~~n~~g  294 (745)
                      ++      |.|.....+|.|.|+|.|.|...
T Consensus       166 g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          166 GSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             SCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             CCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            43      45555555689999999999754

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.66  E-value=3e-15  Score=152.51  Aligned_cols=273  Identities=12%  Similarity=0.068  Sum_probs=143.8

Q ss_pred             cCCCcEEEe-cC--CeEEEEEEEEec------CCCCcEEEEeeCCeeccCCCCCeEEEcCCeEEEEecCCCCCCEEEEEE
Q psy11701        312 DQPEDYEVE-AG--QSATFRCNAVSD------PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSELDSGQYTCR  382 (745)
Q Consensus       312 ~~p~~~~~~-~g--~~~~l~C~~~~~------~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~  382 (745)
                      .+|.++.+. .+  ..+.|+|.....      ....+.+.|...+..    .........  +.....+.....+.+++.
T Consensus        33 ~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~----~w~~~~~~~--~~~~~~~~l~~~y~~rV~  106 (380)
T 3lb6_C           33 NPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSE----TWKTIITKN--LHYKDGFDLNKGIEAXIH  106 (380)
T ss_dssp             CCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCS----SCEEEEESS--SEEEEECCTTSCEEEEEE
T ss_pred             CcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCC----cceEEEecc--EEEEEeecCCCceEEEEE
Confidence            556667775 34  568999977543      133456777665411    111111111  123334455678899999


Q ss_pred             EEeC----CceEE---EEEEEEE----eccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCC-
Q psy11701        383 AQTE----LDFIE---AQATLTV----QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG-  450 (745)
Q Consensus       383 a~n~----~g~~~---~~~~l~v----~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~-  450 (745)
                      |.|.    .|.+.   .......    ..|+.+|+++.+.. .+...+.++|+++...   +...+|.+.|+..+.... 
T Consensus       107 a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~-~~~~~l~csW~p~~~~---~~~~~Y~l~y~~~~~~~~~  182 (380)
T 3lb6_C          107 TLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVY-YNWQYLLCSWKPGIGV---LLDTNYNLFYWYEGLDHAL  182 (380)
T ss_dssp             EECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEE-ETTTEEEEEEECC---------CCEEEEEECTTCSSCE
T ss_pred             eecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEE-CCCcEEEEEEcCCCCC---CCCccEEEEEEECCCCccc
Confidence            9853    33322   1222221    35677889999987 7889999999986432   456789999987654221 


Q ss_pred             ceeEEEEccCceeEEEec--ccccCcceeEEEEEecCCCCCCCCcceEEeCCC-CCCCCCCceeEEEcCCceEEEEeeCC
Q psy11701        451 SIRELIVNKGESTTTEVD--KFVPASKNFARVLAFNGAYNGPPSEIISFVTPE-GVPGTVQSLEAIPLGSSAFYLKWVKP  527 (745)
Q Consensus       451 ~~~~~~~~~~~~~~~~i~--~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~~-~~P~~p~~~~~~~~~~~~i~l~W~~p  527 (745)
                      .........+....+.+.  ++...+.|.|+|.|.|..|.+..+ .+.+.+.+ ..|+||.++.+...+.+++.|+|++|
T Consensus       183 ~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~s~-~~~~~~~~~v~p~pP~~l~v~~~~~~~l~l~W~~P  261 (380)
T 3lb6_C          183 QCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSS-YFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIP  261 (380)
T ss_dssp             ECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CCCE-EEEECGGGSCCCCCCEEEEEC-------CEEEECC
T ss_pred             cCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeeccc-cEEEcHHHcccCCCCceEEEEEcCCCeEEEEECCC
Confidence            111122212233355555  567889999999999998876543 35566655 47889999998877788999999998


Q ss_pred             CCC-CCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecC-CCCCccEEEEEEEEec---CCCCCCcceeeeccc
Q psy11701        528 EQP-NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAG-LEPSTKYRIHLAGYTK---AGDGAESKYLFYVPF  602 (745)
Q Consensus       528 ~~~-~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~p~t~Y~~~V~a~n~---~G~g~~S~~~~~~~~  602 (745)
                      ... ++.+.+|.|+|+..+ ..|....     .    ..++.|.+ |.|++.|.|+|+|...   .+.|.+|+++.....
T Consensus       262 ~~~~~~~~l~Yev~y~~~~-~~w~~~~-----~----~~~~~l~~~L~p~t~Y~~qVRa~~~~~~~~~g~WSeWS~~~~~  331 (380)
T 3lb6_C          262 LGPIPARCFDYEIEIREDD-TTLVTAT-----V----ENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCW  331 (380)
T ss_dssp             SSSCCSTTEEEEECC---------CCE-----E----SSSCC------------CCEEEEECTTTCSSCCCCCCCCC---
T ss_pred             CCCCCcceEEEEEEEEeCC-CCceEec-----c----cceEEEeCccCCCcEEEEEEEEEEcccCCCCCCCCCCCCCEEE
Confidence            754 357899999999853 2222211     1    13577889 9999999999999954   345666666544444


Q ss_pred             CCC
Q psy11701        603 KNP  605 (745)
Q Consensus       603 ~~~  605 (745)
                      .++
T Consensus       332 ~t~  334 (380)
T 3lb6_C          332 EGE  334 (380)
T ss_dssp             ---
T ss_pred             eCC
Confidence            443

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.66  E-value=3.5e-16  Score=151.00  Aligned_cols=171  Identities=18%  Similarity=0.263  Sum_probs=119.1

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecC-----CCeEEEEeCCE--ec---c------CCCCCCceee----cCceEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLP-----EPEIHWVHNGK--PI---S------QAPPNPRRKV----GPNRITI  184 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p-----~~~v~W~~~g~--~~---~------~~~~~~~~~~----~~~~L~i  184 (745)
                      .+.+...|....+.+|++++|.|.+.+.+     .+.+.|+|++.  .+   .      ......++..    ....|.|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            34455667888899999999999998877     58999999641  11   0      0011123322    2238999


Q ss_pred             ccCCCCCCEEEEEEEEeCCceEE-EEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-eEEEeeCCEEc
Q psy11701        185 ENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNWIHNQKEL  259 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g~~~-~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~  259 (745)
                      .+++.+|+|.|+|.+.+..+... ....|.|..  .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..+
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  193 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  193 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence            99999999999999998755322 224566643  35666654444444579999999999885 443 79999999887


Q ss_pred             cCc-eEEE----eec------CcEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        260 TGG-RYTI----LET------GDLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       260 ~~~-~~~~----~~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      ... ....    ..+      ..|.|.++..+|+|.|+|.|.|....
T Consensus       194 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          194 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            654 1111    112      24899999999999999999987644

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.66  E-value=2.9e-16  Score=153.78  Aligned_cols=164  Identities=18%  Similarity=0.285  Sum_probs=112.6

Q ss_pred             eccceeEecCCcEEEEEEEeec--CCCeeEEEECC--EecC-------C----------CCCeEec--cC--CcEEEEcc
Q psy11701         39 TRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDG--VPIN-------P----------SDRISQG--NY--GKSLIIKH   93 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~--~~i~-------~----------~~~~~~~--~~--~~~L~i~~   93 (745)
                      .|....+.+|++|+|.|.+.+.  +.+.+.|+|..  ..+.       .          ..|+.+.  ..  ..+|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (280)
T 3fku_X            6 QSGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS   85 (280)
T ss_dssp             CCCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred             cCCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            3778889999999999999875  55789999732  1111       0          1344433  11  23799999


Q ss_pred             CCCCCCEEEEEEEEeC--------CeeeEEEEEEEEEEe---------------cCeEEecCceeEeeCCCeEEEEEEEe
Q psy11701         94 VEFSDQGSYTCEVSNG--------VGEAKSYSIDLSVLA---------------APYFTVEPEFINAAEEETVTFECKAS  150 (745)
Q Consensus        94 ~~~~d~G~Y~C~~~~~--------~g~~~~~~~~l~V~~---------------~p~~~~~~~~~~v~~G~~~~l~C~~~  150 (745)
                      ++.+|+|.|+|.+.+.        ..........|.|..               ++.+...|. ..+.+|++++|.|.+.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~  164 (280)
T 3fku_X           86 LRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGN  164 (280)
T ss_dssp             CCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECC
T ss_pred             CChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEec
Confidence            9999999999999875        112222345666665               455555566 8899999999999998


Q ss_pred             e-cC-CCeEEEEeC--CEecc---CC------CCCCceee----cCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        151 G-LP-EPEIHWVHN--GKPIS---QA------PPNPRRKV----GPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       151 ~-~p-~~~v~W~~~--g~~~~---~~------~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      + .+ .+.+.|+|.  +..+.   ..      ....++..    ....|.|.+++.+|+|.|+|.+.+..
T Consensus       165 ~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          165 SNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             CCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             CCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            7 44 379999983  22211   00      00112221    12359999999999999999999876

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.66  E-value=3.4e-16  Score=147.66  Aligned_cols=167  Identities=22%  Similarity=0.347  Sum_probs=116.3

Q ss_pred             cCceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Ee---cc-C----C--------CCCCceee------cCceEEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KP---IS-Q----A--------PPNPRRKV------GPNRITI  184 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~---~~-~----~--------~~~~~~~~------~~~~L~i  184 (745)
                      .|....+.+|++++|.|.+.+.+  .+.+.|+|++  ..   +. .    .        ....++..      +...|.|
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            35567889999999999998765  6799999953  11   10 0    0        00123322      1238999


Q ss_pred             ccCCCCCCEEEEEEEEeCCceE-E--EEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-eEEEeeCC
Q psy11701        185 ENLRKSDTGNYGCNATNSLGYV-Y--KDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNWIHNQ  256 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g~~-~--~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~~~~  256 (745)
                      .+++.+|+|.|+|.+.+..+.. .  ....|.|..   .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  165 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA  165 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence            9999999999999999875432 1  235666653   34555544434456789999999999987 888 99999987


Q ss_pred             EEc-----cC----ceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        257 KEL-----TG----GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSG  300 (745)
Q Consensus       257 ~~~-----~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~  300 (745)
                      ...     ..    +.+  ...+.|.|.++..+| |.|+|.|.|..+...+.+
T Consensus       166 ~~~~~~~~~~~~~~~~~--~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  215 (220)
T 1pz5_B          166 LSSGVRTVSSVLQSGFY--SLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK  215 (220)
T ss_dssp             CCTTEEECCCEEETTEE--EEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cccceEEcCCcccCCeE--EEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence            631     11    112  123568999888766 999999999998765543

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.66  E-value=8.3e-17  Score=151.29  Aligned_cols=172  Identities=18%  Similarity=0.267  Sum_probs=113.5

Q ss_pred             ecCeEEecCceeE--eeCCCeEEEEEEEeec---CC-CeEEEEeCCEeccCCCC------CCceeecCceEEEccCCCCC
Q psy11701        124 AAPYFTVEPEFIN--AAEEETVTFECKASGL---PE-PEIHWVHNGKPISQAPP------NPRRKVGPNRITIENLRKSD  191 (745)
Q Consensus       124 ~~p~~~~~~~~~~--v~~G~~~~l~C~~~~~---p~-~~v~W~~~g~~~~~~~~------~~~~~~~~~~L~i~~v~~~d  191 (745)
                      .+|.+...|....  +.+|++++|.|.+.+.   |. +.|+|+|++..+.....      ........+.|.|.+++.+|
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence            3555555554444  7899999999999886   33 69999999987753210      00111123579999999999


Q ss_pred             CEEEEEEEEeCCceE--EEEEEE-EEeecCCeeeeCCCceEEecCceEEEEEEEee-cCCC-eEEEeeCCEEccCce---
Q psy11701        192 TGNYGCNATNSLGYV--YKDVYV-NVLAHAPEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKELTGGR---  263 (745)
Q Consensus       192 ~G~Y~C~~~~~~g~~--~~~~~l-~v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~~---  263 (745)
                      +|.|+|.+.|..+..  ...+.+ .....+|.+...+.......|+.++|.|.+.| .|.+ .|.|++++..+....   
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  167 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTA  167 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC
T ss_pred             CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecc
Confidence            999999999987643  222211 01224666655444333335999999999998 5655 899999998774321   


Q ss_pred             EEEeecCc------EEEcccCCCCCEEEEEEEEeCCce
Q psy11701        264 YTILETGD------LKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       264 ~~~~~~~~------l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                      .....++.      |.|.....+|.|.|+|.|.|....
T Consensus       168 ~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          168 PVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             cEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            11233443      444444445689999999997643

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.66  E-value=7.9e-16  Score=149.04  Aligned_cols=163  Identities=18%  Similarity=0.300  Sum_probs=110.9

Q ss_pred             cCceeEeeCCCeEEEEEEEeec--CCCeEEEEeCC--Eecc---C------CCCCCceee----cCceEEEccCCCCCCE
Q psy11701        131 EPEFINAAEEETVTFECKASGL--PEPEIHWVHNG--KPIS---Q------APPNPRRKV----GPNRITIENLRKSDTG  193 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~g--~~~~---~------~~~~~~~~~----~~~~L~i~~v~~~d~G  193 (745)
                      .|....+.+|++++|.|.+.+.  +.+.+.|+|++  ....   .      .....++..    ....|.|.+++.+|+|
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG   87 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEA   87 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             cCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCE
Confidence            4556789999999999999876  77899999842  1110   0      001122222    1237999999999999


Q ss_pred             EEEEEEEeCCceE---EEEEEEEEeecCC-------------------eeeeCCCceEEecCceEEEEEEEeecC--CCe
Q psy11701        194 NYGCNATNSLGYV---YKDVYVNVLAHAP-------------------EITEAPKDEYTVDGKTVVLTCRVFGAP--KPE  249 (745)
Q Consensus       194 ~Y~C~~~~~~g~~---~~~~~l~v~~~~p-------------------~~~~~~~~~~v~~g~~~~l~C~~~~~p--~~~  249 (745)
                      .|+|.+.+..+..   .....|.|...+.                   .....+....+.+|++++|.|.+.+.+  .+.
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~  167 (256)
T 3ux9_B           88 DYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYA  167 (256)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred             EEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccE
Confidence            9999999865422   2235666664321                   122233445688999999999998876  678


Q ss_pred             EEEeeC--CEEc------------------cCceEEEeecC-----cEEEcccCCCCCEEEEEEEEeCC
Q psy11701        250 VNWIHN--QKEL------------------TGGRYTILETG-----DLKITDVAFADSGEYTCFARNKL  293 (745)
Q Consensus       250 i~W~~~--~~~~------------------~~~~~~~~~~~-----~l~i~~~~~~d~G~Y~C~~~n~~  293 (745)
                      +.|+++  +..+                  ...++....++     .|.|.+++.+|+|.|.|.+.|..
T Consensus       168 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          168 MSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            999986  2211                  11245444332     39999999999999999999863

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}

Probab=99.65  E-value=2.3e-15  Score=138.31  Aligned_cols=179  Identities=13%  Similarity=0.146  Sum_probs=119.9

Q ss_pred             CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEE
Q psy11701        506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY  585 (745)
Q Consensus       506 ~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~  585 (745)
                      +|+++++.....+ ..|.|++|.+.++.+. |.|+|+..+  .|.   ....   +...+.+.|.+|.+++.|.|+|.|.
T Consensus         4 ~P~nv~~~s~n~~-~iL~W~pp~~~~~~v~-Y~V~y~~~~--~w~---~~c~---~~~~~~c~lt~l~~~~~Y~~rV~A~   73 (201)
T 3lqm_A            4 PPENVRMNSVNFK-NILQWESPAFAKGQLT-FTAQYLSYR--IFQ---DKCM---QTTLTECDFSSLSKYGDHTLRVRAE   73 (201)
T ss_dssp             CCEEEEEEEETTE-EEEEEECCCCSSSCCE-EEEEEEETT--EEE---EEEE---EESSSEEECTTSCSSSCEEEEEEEE
T ss_pred             CCcccEEEEECCc-eEEEECCCCCCCCCeE-EEEEEEECC--Ccc---cCcC---ccCCCEEECCCCccCCCEEEEEEEe
Confidence            5789998887665 5699999998777765 999999752  222   1111   3356788999999999999999999


Q ss_pred             ecCCCCCCcceeeeccc----CCCCCCCCCCCCCcceeEEEeecCccccCC---------CcceEEEEEeccCCCCCCCc
Q psy11701        586 TKAGDGAESKYLFYVPF----KNPDNVEGRGSTPNNLVISWTAMPEIEHNA---------PHFKYRIFWRRHNTGEAWNQ  652 (745)
Q Consensus       586 n~~G~g~~S~~~~~~~~----~~~~~~~~~~~~p~~~~v~W~~~~~~~~~g---------~i~~y~i~~~~~~~~~~~~~  652 (745)
                      +..|.|.++.. .+...    ..++.+.. ....++|.|+|.+|... .+|         .+..|.|.|...        
T Consensus        74 ~~~~~S~~s~~-~f~~~~~t~~~PP~v~~-~~~~~si~v~w~~P~~~-~~~~~~~~~~~~~~l~Y~v~y~~~--------  142 (201)
T 3lqm_A           74 FADEHSDWVQI-TFSPVDDTIIGPPGMQV-EVLADCLHMRFLAPKIE-NEYETWTMKNVYNSWTYNVQYWKQ--------  142 (201)
T ss_dssp             ETTEECCCEEE-EECHHHHSBCCCCEEEE-EEETTEEEEEEECCEEE-CSSCEEEHHHHCTTCEEEEEEEET--------
T ss_pred             cCCCcCcceee-eeeecccCeeCCCEEEE-EEeCCEEEEEEcCCCcc-CCCcccCHHHhCCceEEEEEEEEC--------
Confidence            99998888753 22211    11122221 12235666666654322 112         145555544332        


Q ss_pred             cCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecC--cccCCC
Q psy11701        653 DDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG--AYNGPP  730 (745)
Q Consensus       653 ~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~--~G~g~~  730 (745)
                                                      +....  .  . .......+.|.+|+|++.|-|+|+|.+.  +|.|.+
T Consensus       143 --------------------------------~~~~~--~--~-~~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~  185 (201)
T 3lqm_A          143 --------------------------------GTDEK--F--Q-ITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEW  185 (201)
T ss_dssp             --------------------------------TCCCC--E--E-ECCSSSEEEECSCCTTCEEEEEEEEEETTTTEECCC
T ss_pred             --------------------------------CCCcE--E--E-EEecCceEEEecCCCCCcEEEEEEEEeccCCCCCCc
Confidence                                            11111  1  1 1245677899999999999999999996  789999


Q ss_pred             CcceEEeCCCCC
Q psy11701        731 SEIISFVTPEGG  742 (745)
Q Consensus       731 s~~~~~~t~~~~  742 (745)
                      |+++.++|..+.
T Consensus       186 S~~~c~~T~~~~  197 (201)
T 3lqm_A          186 SEPVCEQTTHDE  197 (201)
T ss_dssp             CCCEEEECCCGG
T ss_pred             CCCEeEEeCCCC
Confidence            999999997665

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.65  E-value=2.9e-15  Score=141.04  Aligned_cols=165  Identities=19%  Similarity=0.306  Sum_probs=114.4

Q ss_pred             CceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Ee---cc-----------CCCCCCceeec------CceEEEccC
Q psy11701        132 PEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KP---IS-----------QAPPNPRRKVG------PNRITIENL  187 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~---~~-----------~~~~~~~~~~~------~~~L~i~~v  187 (745)
                      |....+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +.           ......++...      ...|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            4557889999999999998765  5689999842  11   10           01112333321      248999999


Q ss_pred             CCCCCEEEEEEEEeCCceE---EEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CC--CeEEEeeCCEE
Q psy11701        188 RKSDTGNYGCNATNSLGYV---YKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PK--PEVNWIHNQKE  258 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g~~---~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~--~~i~W~~~~~~  258 (745)
                      +.+|+|.|.|.+.+..+..   .....|.|..   .+|.+...+ ...+..|+.++|.|.+.+. |.  +.+.|++++..
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~  165 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKD  165 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSS
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEe
Confidence            9999999999999875531   2235677764   245555444 3345689999999999887 65  68999999865


Q ss_pred             cc--CceEEEeec------CcEEEcccCCCCCEEEEEEEEeCCceEE
Q psy11701        259 LT--GGRYTILET------GDLKITDVAFADSGEYTCFARNKLGTAQ  297 (745)
Q Consensus       259 ~~--~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~~~  297 (745)
                      +.  ........+      ..|.|......|.|.|+|.|.|..+...
T Consensus       166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          166 ITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             cceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            41  000011111      2488888888999999999999887754

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=7.7e-16  Score=129.51  Aligned_cols=111  Identities=23%  Similarity=0.307  Sum_probs=89.6

Q ss_pred             CCCCCCcceEEeCCCCCCC-CCCceeEE-EcCCceEEEEeeCC--CCCCCceeeEEEEEEEcCCcccCCcccccccccCC
Q psy11701        487 YNGPPSEIISFVTPEGVPG-TVQSLEAI-PLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP  562 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~-~p~~~~~~-~~~~~~i~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~  562 (745)
                      |.|++|..+.++|.+++|. +|.++++. ..+.++|.|+|++|  ...+|.|++|+|+|+.........+...   + ..
T Consensus         1 G~g~~S~~v~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~---~-~~   76 (124)
T 2dbj_A            1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEE---V-GQ   76 (124)
T ss_dssp             CCSCCCCCCCCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEEEEEEE---E-ES
T ss_pred             CcCCCCCCEEEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCccceEEE---e-CC
Confidence            6788999999999999887 78899988 58899999999999  5678999999999975433221122110   1 34


Q ss_pred             CcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       563 ~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      ..+++.|.+|.|++.|.|+|.|+|.+|.|++|..+.+.+
T Consensus        77 ~~~~~~l~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~~~~T  115 (124)
T 2dbj_A           77 NGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI  115 (124)
T ss_dssp             TTSCEEEECCCSSSEEEECEEEEESSCBCCCCCCEEEEC
T ss_pred             CcceEEecCCCCCCEEEEEEEEECCCccCCCCCCEEEEc
Confidence            568999999999999999999999999999998775553

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.65  E-value=2.5e-15  Score=141.81  Aligned_cols=166  Identities=19%  Similarity=0.322  Sum_probs=113.8

Q ss_pred             CceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--E---ecc-----------CCCCCCceeec------CceEEEccC
Q psy11701        132 PEFINAAEEETVTFECKASGLP--EPEIHWVHNG--K---PIS-----------QAPPNPRRKVG------PNRITIENL  187 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~---~~~-----------~~~~~~~~~~~------~~~L~i~~v  187 (745)
                      |....+.+|++++|.|.+.+.+  .+.+.|+|..  .   .+.           ......++...      ...|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            4566789999999999998765  4689999843  1   110           01112333321      248999999


Q ss_pred             CCCCCEEEEEEEEeCCc----e--EEEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-eEEEee-C
Q psy11701        188 RKSDTGNYGCNATNSLG----Y--VYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNWIH-N  255 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g----~--~~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~~-~  255 (745)
                      +.+|+|.|.|.+.+..|    .  ......|.|..   .+|.+...+....+..|+.++|.|.+.+. |.+ .+.|++ +
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  166 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKN  166 (223)
T ss_dssp             CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence            99999999999998653    1  11235677763   34555432222235689999999999887 666 999999 8


Q ss_pred             CEEccC----------ceEEEeecCcEEEcccCC--CCCEEEEEEEEeCCceEEEE
Q psy11701        256 QKELTG----------GRYTILETGDLKITDVAF--ADSGEYTCFARNKLGTAQGS  299 (745)
Q Consensus       256 ~~~~~~----------~~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~n~~g~~~~~  299 (745)
                      +..+..          +.+.  ....|.|.....  +|.|.|+|.|.|..+.....
T Consensus       167 g~~l~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~  220 (223)
T 1dee_B          167 NSDISSTRGFPSVLRGGKYA--ATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD  220 (223)
T ss_dssp             SCBCSCEEECCCEEETTEEE--EEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred             CCccceeEECCccccCCeEE--EEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence            877643          1111  123578877766  78999999999998876543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.65  E-value=6e-16  Score=147.79  Aligned_cols=166  Identities=21%  Similarity=0.325  Sum_probs=111.9

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--Ee---c------------CCCCCeEecc---CCcEEEEccCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VP---I------------NPSDRISQGN---YGKSLIIKHVEF   96 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~---i------------~~~~~~~~~~---~~~~L~i~~~~~   96 (745)
                      ...|..+.+.+|++++|.|.+. .+.+.+.|+|++  ..   +            ....|+.+..   ...+|.|.+++.
T Consensus         3 ~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            3 TQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             ccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            4567788999999999999995 467799999853  11   1            0134555432   234899999999


Q ss_pred             CCCEEEEEEEEeCCe----eeEEEEEEEEEEe------cCeEEec-CceeEeeCCCeEEEEEEEeec-CCC-eEEEEeCC
Q psy11701         97 SDQGSYTCEVSNGVG----EAKSYSIDLSVLA------APYFTVE-PEFINAAEEETVTFECKASGL-PEP-EIHWVHNG  163 (745)
Q Consensus        97 ~d~G~Y~C~~~~~~g----~~~~~~~~l~V~~------~p~~~~~-~~~~~v~~G~~~~l~C~~~~~-p~~-~v~W~~~g  163 (745)
                      +|+|.|+|.+.+..+    ........|.|..      +|.+... |....+.+|+.++|.|.+.|. |.+ .+.|+++|
T Consensus        82 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  161 (238)
T 1bec_A           82 SQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG  161 (238)
T ss_dssp             GGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETT
T ss_pred             ccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECC
Confidence            999999999987631    1111234567764      5655443 444556789999999999985 654 99999999


Q ss_pred             EeccCCCCCC--ceeecCce------EEEccCCCCC-CEEEEEEEEeCC
Q psy11701        164 KPISQAPPNP--RRKVGPNR------ITIENLRKSD-TGNYGCNATNSL  203 (745)
Q Consensus       164 ~~~~~~~~~~--~~~~~~~~------L~i~~v~~~d-~G~Y~C~~~~~~  203 (745)
                      ..+.......  .....++.      |.|......| .|.|+|.|.|..
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          162 KEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             EEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred             EECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence            9886432111  11123333      3344333333 678999999874

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.65  E-value=4.8e-16  Score=132.91  Aligned_cols=126  Identities=22%  Similarity=0.320  Sum_probs=98.7

Q ss_pred             CCCCCCcceEEeCCCCCCC-CCCceeEEEcCCceEEEEeeCCCC--CCCceeeEEEEEEEcCCcccCCcccccccccCCC
Q psy11701        487 YNGPPSEIISFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPEQ--PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT  563 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~  563 (745)
                      |.|++|..+.++|.+++|. +|.++++...+.++|.|+|++|..  .+|.|.+|.|+|+..+...+....     .....
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~-----~~~~~   75 (132)
T 1x5h_A            1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTET-----LVSGT   75 (132)
T ss_dssp             CCCCCCCCCCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECC-----BCCTT
T ss_pred             CcCCCCCCEEEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCccEEE-----EeCCC
Confidence            6788999999999999998 678999999999999999999986  788999999999986644322111     12567


Q ss_pred             cceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecccCCCCCCCCCCCCCcc
Q psy11701        564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFKNPDNVEGRGSTPNN  617 (745)
Q Consensus       564 ~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~~~~~~~~~~~~p~~  617 (745)
                      .++++|.+|+|++.|.|+|.|+|..|.|++|..+.+.+..........|..|.+
T Consensus        76 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~~~~~~~P~~P~~  129 (132)
T 1x5h_A           76 QLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEVSGP  129 (132)
T ss_dssp             CCEEEEECCCSSCEEEEECEEEETTEEEEECCCEEEECCSSCCCCCCCCCCCCC
T ss_pred             ccEEEeCCCCCCCEEEEEEEEEcCCccCCCCcCEEeEcCcccCCcccCCCCCCC
Confidence            789999999999999999999999999999987765544332222234455543

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.65  E-value=9.1e-16  Score=128.28  Aligned_cols=106  Identities=26%  Similarity=0.376  Sum_probs=91.9

Q ss_pred             CCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcce
Q psy11701        487 YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS  566 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (745)
                      |.|++|..+.++|.+++|++|.++++...+.++|.|+|++|.+.+|.|.+|.|+|+..+........     ......++
T Consensus         1 G~g~~S~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~-----~~~~~~~~   75 (119)
T 1wfn_A            1 GSSGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTH-----YLPNVTLE   75 (119)
T ss_dssp             CCCCCSCCCSCCSSCCSCCCCSCCEEESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGGGCCCE-----EECSSCCE
T ss_pred             CCCCCCCCEEEECCCCCCCCCCceEEEECCCCEEEEEEcCCCCCCCcEEEEEEEEEECCCCCceEEE-----EeCCCceE
Confidence            6788999999999999999999999999999999999999998889999999999987644321111     11456789


Q ss_pred             eeecCCCCCccEEEEEEEEecCCCCCCccee
Q psy11701        567 AKLAGLEPSTKYRIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       567 ~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~  597 (745)
                      +.|.+|.|++.|.|+|.|+|.+|.|++|..+
T Consensus        76 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~  106 (119)
T 1wfn_A           76 YRVTGLTALTTYTIEVAAMTSKGQGQVSAST  106 (119)
T ss_dssp             EEEESCCTTCEEEEEEEEECSSCEEEEEEEE
T ss_pred             EEEcCCCCCCEEEEEEEEEcCCccCCCCCCE
Confidence            9999999999999999999999999998775

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.64  E-value=1.4e-15  Score=147.43  Aligned_cols=167  Identities=18%  Similarity=0.318  Sum_probs=115.4

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecC------CCeEEEEeC--CEecc---C------CCCCCceee----cCceEEE
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLP------EPEIHWVHN--GKPIS---Q------APPNPRRKV----GPNRITI  184 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p------~~~v~W~~~--g~~~~---~------~~~~~~~~~----~~~~L~i  184 (745)
                      +.+...|....+.+|++++|.|.+.+.+      .+.+.|+|+  |..+.   .      .....++..    ....|.|
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I   85 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI   85 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence            4556678888999999999999998876      579999984  22111   0      001223322    2348999


Q ss_pred             ccCCCCCCEEEEEEEEeCCceE-EEEEEEEEeecC-----------------Cee-eeCCCceEEecCceEEEEEEEeec
Q psy11701        185 ENLRKSDTGNYGCNATNSLGYV-YKDVYVNVLAHA-----------------PEI-TEAPKDEYTVDGKTVVLTCRVFGA  245 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g~~-~~~~~l~v~~~~-----------------p~~-~~~~~~~~v~~g~~~~l~C~~~~~  245 (745)
                      .+++.+|+|.|.|.+.+..+.. .....|.|...+                 |.+ ...+....+.+|++++|.|.+.+.
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~  165 (264)
T 2gjj_A           86 GSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGY  165 (264)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESS
T ss_pred             CCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCC
Confidence            9999999999999999875432 223566666431                 122 223334578899999999999887


Q ss_pred             CC--CeEEEeeCC--EE---cc---------------CceEEEee-----cCcEEEcccCCCCCEEEEEEEEeC
Q psy11701        246 PK--PEVNWIHNQ--KE---LT---------------GGRYTILE-----TGDLKITDVAFADSGEYTCFARNK  292 (745)
Q Consensus       246 p~--~~i~W~~~~--~~---~~---------------~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~n~  292 (745)
                      +.  +.+.|+++.  ..   +.               ..++.+..     ...|.|.+++.+|+|.|.|.+.|.
T Consensus       166 ~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          166 SFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             CGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            64  689999863  11   10               23443322     237999999999999999999985

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.64  E-value=6.4e-16  Score=144.60  Aligned_cols=165  Identities=16%  Similarity=0.273  Sum_probs=112.5

Q ss_pred             CceeEeeCCCeEEEEEEEeecC--CCeEEEEeC--CEecc----C---------CCCCCceee------cCceEEEccCC
Q psy11701        132 PEFINAAEEETVTFECKASGLP--EPEIHWVHN--GKPIS----Q---------APPNPRRKV------GPNRITIENLR  188 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--g~~~~----~---------~~~~~~~~~------~~~~L~i~~v~  188 (745)
                      |....+.+|++++|.|.+.+.+  .+.+.|+|+  |....    .         .....++..      ....|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            5566789999999999998865  379999985  22210    0         001223322      12389999999


Q ss_pred             CCCCEEEEEEEEeCCceEEEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-eEEEeeCCEEcc---
Q psy11701        189 KSDTGNYGCNATNSLGYVYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNWIHNQKELT---  260 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~~~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~---  260 (745)
                      .+|+|.|+|.+.+.. .......|.|..   .+|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++..+.   
T Consensus        87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~  165 (210)
T 3d9a_H           87 TEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT  165 (210)
T ss_dssp             GGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE
T ss_pred             cccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEE
Confidence            999999999998753 111224566653   34555544434456789999999999987 777 999999887532   


Q ss_pred             CceEE----EeecCcEEEcccCCCCCEEEEEEEEeCCceEEE
Q psy11701        261 GGRYT----ILETGDLKITDVAFADSGEYTCFARNKLGTAQG  298 (745)
Q Consensus       261 ~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~  298 (745)
                      .....    ....+.|.|..+..+| |.|+|.|.|..+....
T Consensus       166 ~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          166 FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             CCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             cCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            11110    1123458899888866 9999999999887543

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=99.64  E-value=2.9e-15  Score=141.38  Aligned_cols=190  Identities=12%  Similarity=0.122  Sum_probs=116.1

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCc-eeeEEEEEEEcCCcc----cCCcccccccccCCCcceeeecCCCCCc
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTK----VGPLLERLPYISDPTTTSAKLAGLEPST  576 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~-i~~Y~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~L~p~t  576 (745)
                      .+|+.|.++.+.....++++++|+++.+.+.. ...|.|.|+......    +.......  ........+...+|.+++
T Consensus        28 ~pP~~P~~l~C~~~~~~~~~c~W~p~~~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~--~~~~~~C~~~~~~l~~~~  105 (236)
T 1axi_B           28 NSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYV--SAGENSCYFNSSFTSIAI  105 (236)
T ss_dssp             ----CCCEEEEEBSSSSCEEEEECCC--------CSCEEEEEECC------CCEECSCSS--TTCTTEEEECGGGCCSSS
T ss_pred             CCCCCCcCCeEEeCCCCEEEEEecCCCCCCCCCCceEEEEEEeCCCCcCCCceeeCCCCC--CCCCEEEEECCcCCcccc
Confidence            57889999988888889999999976553333 258999997653321    11111000  002344667788999999


Q ss_pred             cEEEEEEEEecCCCCCCcceeeecc---cCCCCCCC--CCCCC----CcceeEEEeecCcc-ccCC-CcceEEEEEeccC
Q psy11701        577 KYRIHLAGYTKAGDGAESKYLFYVP---FKNPDNVE--GRGST----PNNLVISWTAMPEI-EHNA-PHFKYRIFWRRHN  645 (745)
Q Consensus       577 ~Y~~~V~a~n~~G~g~~S~~~~~~~---~~~~~~~~--~~~~~----p~~~~v~W~~~~~~-~~~g-~i~~y~i~~~~~~  645 (745)
                      .|.|+|.| | .+.+.+.. +....   ..+|.++.  .....    +..|.|+|++|... ..+| .+..|.|+|+..+
T Consensus       106 ~Y~~~V~a-N-~~~s~~~~-~~~~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry~~~~  182 (236)
T 1axi_B          106 PYCIKLTS-N-GGTVDEKC-FSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVN  182 (236)
T ss_dssp             EEEEEEEE-T-TEEEEEEE-EEGGGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETT
T ss_pred             eEEEEEEE-C-CccCCCeE-eecccccccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEEEECC
Confidence            99999999 8 33332211 11111   11122221  11111    23588899877543 3466 6688888888653


Q ss_pred             CCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCc
Q psy11701        646 TGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGA  725 (745)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~  725 (745)
                      . ..|..                                           +.....+++.|.+|+|++.|.|+|+|.+.+
T Consensus       183 ~-~~w~~-------------------------------------------~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~  218 (236)
T 1axi_B          183 E-TKWKM-------------------------------------------MDPILTTSVPVYSLKVDKEYEVRVRSKQRN  218 (236)
T ss_dssp             C-SSCEE-------------------------------------------CCCBSSSEEEEEEEETTSCEEEEEEEEETT
T ss_pred             C-CceEE-------------------------------------------EeccCCCEEEEeccCCCCEEEEEEEEEECC
Confidence            2 11110                                           112345788899999999999999999999


Q ss_pred             c--cCCCCcceEEeCCC
Q psy11701        726 Y--NGPPSEIISFVTPE  740 (745)
Q Consensus       726 G--~g~~s~~~~~~t~~  740 (745)
                      |  .|+||+++.|+|++
T Consensus       219 gg~ws~WS~~~~~~~p~  235 (236)
T 1axi_B          219 SGNYGEFSEVLYVTLPQ  235 (236)
T ss_dssp             SSCCCCCCCCEEECCCC
T ss_pred             CCCcCCCCCCEEEECCC
Confidence            8  89999999999986

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.64  E-value=6.8e-16  Score=128.84  Aligned_cols=109  Identities=16%  Similarity=0.250  Sum_probs=91.6

Q ss_pred             CCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcce
Q psy11701        487 YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS  566 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (745)
                      |.|.+|..+.++|...+|.+|.++++...+.++|.|+|.+|.+.+++|.+|.|+|+.....  ..|..    +.....+.
T Consensus         1 G~s~~S~~~~~~t~~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~--~~~~~----~~~~~~~~   74 (118)
T 1x3d_A            1 GSSGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGN--GEFCQ----CYMGSQKQ   74 (118)
T ss_dssp             CCCCCCCCCCCCCCCSCCCCCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTSS--SCCEE----EEEESCSE
T ss_pred             CCCCCCcCEEEEcCCCCCcCCCCcEEeccCCCEEEEEECCCCCCCCcceEEEEEEecCCCC--CCeEE----eeccCCcE
Confidence            6788899899999999999999999999999999999999998888999999999876542  12221    11234588


Q ss_pred             eeecCCCCCccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        567 AKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       567 ~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      +++.+|.|++.|.|+|.|.|..|.|.+|..+...+
T Consensus        75 ~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T  109 (118)
T 1x3d_A           75 FKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYT  109 (118)
T ss_dssp             EEEESCCTTCEEEEECCEEESSCBCCCCCCEEEEC
T ss_pred             EEeCCCCCCCEEEEEEEEEECCCCCCCccCEEEEc
Confidence            99999999999999999999999999998776553

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.64  E-value=8.2e-16  Score=129.35  Aligned_cols=105  Identities=28%  Similarity=0.450  Sum_probs=88.6

Q ss_pred             cCCCCCCCCcceEEeCCCC------CCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccc
Q psy11701        484 NGAYNGPPSEIISFVTPEG------VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP  557 (745)
Q Consensus       484 n~~G~g~~S~~~~~~t~~~------~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~  557 (745)
                      +..|.|++|..+.++|.++      +|++|.++++...+ ++|.|+|++|.+.+|.|.+|.|+|+. +..... ..    
T Consensus         2 t~~G~g~~S~~~~~~T~~~~~~~~~~P~~P~~l~~~~~~-~sv~l~W~~P~~~~g~i~~Y~v~y~~-~~~~~~-~~----   74 (126)
T 1x5i_A            2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLV-TSIVVSWTPPENQNIVVRGYAIGYGI-GSPHAQ-TI----   74 (126)
T ss_dssp             CSCCCCCCCCCCCSCCCCTTSBCSSCCCSCSEEEEEEET-TEEEEEEECCSCTTBCCCEEEEEECS-SCGGGE-EE----
T ss_pred             CCCccCCCCCCEEeECccccCccCCCCCCCCeeEEEecC-CEEEEEEcCCCCCCCCEeEEEEEEEc-CCCCce-EE----
Confidence            4679999999999999988      99999999999987 99999999998888999999999983 221111 11    


Q ss_pred             cccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcce
Q psy11701        558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKY  596 (745)
Q Consensus       558 ~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~  596 (745)
                       ......++++|.+|+|++.|.|+|.|+|.+|.|+++..
T Consensus        75 -~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~  112 (126)
T 1x5i_A           75 -KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYE  112 (126)
T ss_dssp             -ECCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCC
T ss_pred             -EeCCCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceee
Confidence             11567789999999999999999999999999999754

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.63  E-value=1.5e-16  Score=151.84  Aligned_cols=167  Identities=18%  Similarity=0.254  Sum_probs=114.9

Q ss_pred             CceeEeeCCCeEEEEEEEeecC-CC-eEEEEeCC--Eec---c------CCCCCCceee----cCceEEEccCCCCCCEE
Q psy11701        132 PEFINAAEEETVTFECKASGLP-EP-EIHWVHNG--KPI---S------QAPPNPRRKV----GPNRITIENLRKSDTGN  194 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p-~~-~v~W~~~g--~~~---~------~~~~~~~~~~----~~~~L~i~~v~~~d~G~  194 (745)
                      |....+.+|++++|.|.+.+.+ .+ .+.|+|++  ..+   .      ......++..    ....|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            7777899999999999998754 34 79999863  221   0      0011123222    23489999999999999


Q ss_pred             EEEEEEeCCce---EEEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeecCC--CeEEEeeCCEEccCceEEE
Q psy11701        195 YGCNATNSLGY---VYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGAPK--PEVNWIHNQKELTGGRYTI  266 (745)
Q Consensus       195 Y~C~~~~~~g~---~~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~  266 (745)
                      |+|.+.+..+.   ......|.|..   .+|.+...+.......|+.++|.|.+.+.++  +.+.|++++..+.......
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  185 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT  185 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence            99999998772   22234555532   3455544333333446889999999988643  3899999999876542211


Q ss_pred             ----eec------CcEEEcccCCCCCEEEEEEEEeCCceEEE
Q psy11701        267 ----LET------GDLKITDVAFADSGEYTCFARNKLGTAQG  298 (745)
Q Consensus       267 ----~~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~  298 (745)
                          ..+      ..|.|.++..+|.|.|+|.|.|......+
T Consensus       186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  227 (234)
T 2j6e_L          186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  227 (234)
T ss_dssp             CCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCE
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEE
Confidence                111      24889999999999999999998766433

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.63  E-value=2e-16  Score=150.94  Aligned_cols=170  Identities=21%  Similarity=0.327  Sum_probs=98.5

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCC--Eec---c------CCCCCCcee----ecCceEEEccCCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG--KPI---S------QAPPNPRRK----VGPNRITIENLRK  189 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g--~~~---~------~~~~~~~~~----~~~~~L~i~~v~~  189 (745)
                      .+.+...|....+.+|++++|.|.+.+.|.+.+.|+|++  ..+   .      ......++.    .....|.|.+++.
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            344555577788999999999999998777889999853  211   0      000111221    1234799999999


Q ss_pred             CCCEEEEEEEEeCCceEE-EEEEEEEee--cCCeeeeCCCceEEecCceEEEEEEEeecC-CC-eEEEeeCCEEccCc-e
Q psy11701        190 SDTGNYGCNATNSLGYVY-KDVYVNVLA--HAPEITEAPKDEYTVDGKTVVLTCRVFGAP-KP-EVNWIHNQKELTGG-R  263 (745)
Q Consensus       190 ~d~G~Y~C~~~~~~g~~~-~~~~l~v~~--~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p-~~-~i~W~~~~~~~~~~-~  263 (745)
                      +|+|.|+|.+.+..+... ....|.|..  .+|.+...+....+..|+.++|.|.+.+.+ .+ .+.|++++..+... .
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~  182 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  182 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence            999999999988765321 123444443  356666544444444799999999999854 33 79999999877554 1


Q ss_pred             EEE----e------ecCcEEEcccCCCCCEEEEEEEEeCCc
Q psy11701        264 YTI----L------ETGDLKITDVAFADSGEYTCFARNKLG  294 (745)
Q Consensus       264 ~~~----~------~~~~l~i~~~~~~d~G~Y~C~~~n~~g  294 (745)
                      ...    .      ....|.|.....+|+|.|+|.|.|...
T Consensus       183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          183 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             EecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            111    0      112588888888999999999998643

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=9.1e-16  Score=128.97  Aligned_cols=111  Identities=23%  Similarity=0.419  Sum_probs=91.9

Q ss_pred             CCCCCCcceEEeCCCCCCC-CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcc
Q psy11701        487 YNGPPSEIISFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT  565 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (745)
                      |.|++|..+.+.|.++.|. +|.++++...+.++|.|+|++|.+.+|.|.+|.|+|+.........+..    .......
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~----~~~~~~~   76 (121)
T 2dlh_A            1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMK----HNVADSQ   76 (121)
T ss_dssp             CCCCCCSSSCSCCCCCCCCSCCEEEEECCCSSSBCCEEEECCSCCCSCEEEEEEECCSCTTSCTTTSCC----CCCSSCS
T ss_pred             CCCCCCCCEEEECCCcCCCCCCcccEEEecCCCEEEEEECCCCCCCCcEeEEEEEEEeCCCCCccccEE----EecCCce
Confidence            6789999999999988885 8999999988999999999999888899999999998765433332221    1134668


Q ss_pred             eeeecCCCCCccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        566 SAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       566 ~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      .+.|.+|.|++.|.|+|.|+|..|.|++|..+.+.+
T Consensus        77 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  112 (121)
T 2dlh_A           77 ITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVIT  112 (121)
T ss_dssp             EECCBSCCSSCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred             EEEecCCCCCCEEEEEEEEEeCCccCCCCCCEEEEC
Confidence            899999999999999999999999999997765543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.63  E-value=2.8e-15  Score=144.13  Aligned_cols=169  Identities=19%  Similarity=0.275  Sum_probs=115.4

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe--------------CCEeccCCCCC-Cceee-----cCceEEEc
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH--------------NGKPISQAPPN-PRRKV-----GPNRITIE  185 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~--------------~g~~~~~~~~~-~~~~~-----~~~~L~i~  185 (745)
                      +.+...|....+.+|++++|.| ..+.+.+.+.|+|              ++......... .++..     .+..|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            3456667888899999999999 6667888999998              23222222111 33332     23489999


Q ss_pred             cCCCCCCEEEEEEEEeCC----ceEEEEEEEEEee-----cCCeee-eCCCceEEecCceEEEEEEEeec-CCC-eEEEe
Q psy11701        186 NLRKSDTGNYGCNATNSL----GYVYKDVYVNVLA-----HAPEIT-EAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNWI  253 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~----g~~~~~~~l~v~~-----~~p~~~-~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~  253 (745)
                      +++.+|+|.|.|.+.+..    ........|.|..     .+|.+. ..+....+.+|+.++|.|.+.+. |.+ .+.|+
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  161 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence            999999999999998532    2222335666653     345443 44444556679999999999885 444 89999


Q ss_pred             eCCEEccCceEEEe---------ecC------cEEEcccCCCC-CEEEEEEEEeCCce
Q psy11701        254 HNQKELTGGRYTIL---------ETG------DLKITDVAFAD-SGEYTCFARNKLGT  295 (745)
Q Consensus       254 ~~~~~~~~~~~~~~---------~~~------~l~i~~~~~~d-~G~Y~C~~~n~~g~  295 (745)
                      +++..+........         .++      .|.|.....+| .|.|+|.|.|....
T Consensus       162 ~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          162 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            99988764322110         122      37888887777 99999999986543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.63  E-value=2.2e-15  Score=142.72  Aligned_cols=167  Identities=18%  Similarity=0.304  Sum_probs=111.3

Q ss_pred             CceeEeeCCCeEEEEEEEeecCC----CeEEEEeC--CEecc----C---------CCCCCceee------cCceEEEcc
Q psy11701        132 PEFINAAEEETVTFECKASGLPE----PEIHWVHN--GKPIS----Q---------APPNPRRKV------GPNRITIEN  186 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~----~~v~W~~~--g~~~~----~---------~~~~~~~~~------~~~~L~i~~  186 (745)
                      |....+.+|++++|.|.+.+.+.    +.+.|+|+  +..+.    .         .....++..      ....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            55667899999999999998764    79999984  22110    0         011223322      125899999


Q ss_pred             CCCCCCEEEEEEEEeCCc------eE-E--EEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-eEEE
Q psy11701        187 LRKSDTGNYGCNATNSLG------YV-Y--KDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNW  252 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g------~~-~--~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W  252 (745)
                      ++.+|+|.|.|.+.+..|      .. .  ..+.|.|..   .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W  166 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW  166 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEE
Confidence            999999999999998754      11 1  236777763   34555543333446789999999999986 766 9999


Q ss_pred             eeCCEEccCc-eEEE------eecCcEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy11701        253 IHNQKELTGG-RYTI------LETGDLKITDVAFADSGEYTCFARNKLGTAQGS  299 (745)
Q Consensus       253 ~~~~~~~~~~-~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~  299 (745)
                      ++++..+... ....      ...+.|.|..+..+| |.|+|.|.|..+.....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          167 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             GGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             eeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            9987653210 0001      122358888888756 99999999988775443

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=3.8e-15  Score=127.75  Aligned_cols=112  Identities=28%  Similarity=0.444  Sum_probs=92.3

Q ss_pred             CCCCCCcceEEeCCCCCCC-CCCceeEEEcCCceEEEEeeCC--CCCCCceeeEEEEEEEcCCcccCCcccccccccCCC
Q psy11701        487 YNGPPSEIISFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT  563 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~  563 (745)
                      |.|++|..+.++|.+++|. +|.++++...+.++|.|+|++|  .+.+|.|.+|.|+|+..+..........   .....
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~---~~~~~   77 (134)
T 2edx_A            1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVD---GISRE   77 (134)
T ss_dssp             CCCCCCCCCCCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEEC---CCBTT
T ss_pred             CCCCCcCCEEEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEE---eeCCC
Confidence            6788999999999999998 7889999999999999999999  5678899999999998765432221110   11456


Q ss_pred             cceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       564 ~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      .++++|.+|.|++.|.|+|.|+|..|.|++|..+...+
T Consensus        78 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  115 (134)
T 2edx_A           78 HSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRT  115 (134)
T ss_dssp             CSEEEEESCCTTCEEEEEEEEEETTBCCCCCCCEEEEC
T ss_pred             ccEEEeCCCCCCCEEEEEEEEEcCCCcCCCCCCEEeec
Confidence            78999999999999999999999999999987765443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.63  E-value=4.7e-15  Score=146.13  Aligned_cols=178  Identities=19%  Similarity=0.299  Sum_probs=120.4

Q ss_pred             cCceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Eecc---C-----------CCCCCceee------cCceEEEcc
Q psy11701        131 EPEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KPIS---Q-----------APPNPRRKV------GPNRITIEN  186 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~~~---~-----------~~~~~~~~~------~~~~L~i~~  186 (745)
                      .|....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.   .           .....++..      ....|.|.+
T Consensus        28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            45567889999999999998866  5799999953  1110   0           001122221      235799999


Q ss_pred             CCCCCCEEEEEEEEeCC-c--eEE--EEEEEEEee---------------cCCeeeeCCCceEEecCceEEEEEEEeecC
Q psy11701        187 LRKSDTGNYGCNATNSL-G--YVY--KDVYVNVLA---------------HAPEITEAPKDEYTVDGKTVVLTCRVFGAP  246 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~-g--~~~--~~~~l~v~~---------------~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p  246 (745)
                      ++.+|+|.|+|.+.+.. |  ...  ....|.|..               .++.+...|....+.+|++++|.|.+.+.+
T Consensus       108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~  187 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL  187 (291)
T ss_dssp             CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred             CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence            99999999999999874 2  111  234666664               134455567777899999999999998877


Q ss_pred             CC------eEEEeeCC--EE---cc----------CceEEEeec---CcEEEcccCCCCCEEEEEEEEeCCceE-EEEEE
Q psy11701        247 KP------EVNWIHNQ--KE---LT----------GGRYTILET---GDLKITDVAFADSGEYTCFARNKLGTA-QGSGS  301 (745)
Q Consensus       247 ~~------~i~W~~~~--~~---~~----------~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~  301 (745)
                      .+      .+.|+++.  ..   +.          ..++.....   ..|.|.+++.+|+|.|.|.+.+..... .....
T Consensus       188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~  267 (291)
T 2gki_A          188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGTK  267 (291)
T ss_dssp             EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCEE
Confidence            65      89999952  21   10          234443322   369999999999999999999854322 22345


Q ss_pred             EEEeecc
Q psy11701        302 LTVKEHT  308 (745)
Q Consensus       302 l~v~~~p  308 (745)
                      |.|+..+
T Consensus       268 l~v~~~~  274 (291)
T 2gki_A          268 LEIKHHH  274 (291)
T ss_dssp             EEEECC-
T ss_pred             EEEEeeE
Confidence            6665544

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.63  E-value=1.5e-15  Score=143.53  Aligned_cols=163  Identities=18%  Similarity=0.256  Sum_probs=111.0

Q ss_pred             CceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Eecc--------------CCCCCCceee------cCceEEEccC
Q psy11701        132 PEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KPIS--------------QAPPNPRRKV------GPNRITIENL  187 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~~~--------------~~~~~~~~~~------~~~~L~i~~v  187 (745)
                      |....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.              ......++..      ....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            4556789999999999998866  6799999853  2110              0011233332      1358999999


Q ss_pred             CCCCCEEEEEEEEeCCc-----e---EEEEEEEEEee---cCCeeee-CCCceEEecCceEEEEEEEeec-CCC-eEEEe
Q psy11701        188 RKSDTGNYGCNATNSLG-----Y---VYKDVYVNVLA---HAPEITE-APKDEYTVDGKTVVLTCRVFGA-PKP-EVNWI  253 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g-----~---~~~~~~l~v~~---~~p~~~~-~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~  253 (745)
                      +.+|+|.|.|.+.+..|     .   ......|.|..   .+|.+.. .+.. .+.+|+.++|.|.+.+. |.+ .+.|+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~  165 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWN  165 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEe
Confidence            99999999999998754     2   11235677764   2355443 3332 35689999999999986 665 89999


Q ss_pred             eCCEEccCc--eEEEee------cCcEEEcccCCCCCEEEEEEEEeCCceE
Q psy11701        254 HNQKELTGG--RYTILE------TGDLKITDVAFADSGEYTCFARNKLGTA  296 (745)
Q Consensus       254 ~~~~~~~~~--~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~n~~g~~  296 (745)
                      +++..+...  ......      ...|.|..+..+| |.|+|.|.|..+..
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  215 (225)
T 1op3_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  215 (225)
T ss_dssp             TTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred             cCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence            988653210  000111      2358899888888 99999999976554

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.63  E-value=1.7e-15  Score=147.68  Aligned_cols=170  Identities=16%  Similarity=0.268  Sum_probs=114.3

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe--CCEe------------ccCCCCC-Cceee-----cCceEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH--NGKP------------ISQAPPN-PRRKV-----GPNRITI  184 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~--~g~~------------~~~~~~~-~~~~~-----~~~~L~i  184 (745)
                      .+.+...|....+.+|++++|.|.+. .+.+.+.|+|  .+..            ....... .++..     .+..|.|
T Consensus        26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (268)
T 3pl6_D           26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI  104 (268)
T ss_dssp             -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence            34455667788899999999999987 4778999999  2221            1111111 23322     2458999


Q ss_pred             ccCCCCCCEEEEEEEEeC--CceEEEEEEEEEee-----cCCeee-eCCCceEEecCceEEEEEEEeecCCC--eEEEee
Q psy11701        185 ENLRKSDTGNYGCNATNS--LGYVYKDVYVNVLA-----HAPEIT-EAPKDEYTVDGKTVVLTCRVFGAPKP--EVNWIH  254 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~--~g~~~~~~~l~v~~-----~~p~~~-~~~~~~~v~~g~~~~l~C~~~~~p~~--~i~W~~  254 (745)
                      .+++.+|+|.|+|.+.+.  .........+.|..     .+|.+. ..+....+.+|+.++|.|.+.+.+++  .+.|++
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~  184 (268)
T 3pl6_D          105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  184 (268)
T ss_dssp             CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence            999999999999999974  22333334566653     144443 34444456679999999999986554  899999


Q ss_pred             CCEEccCceEEE---------------eecCcEEEcccCCCC-CEEEEEEEEeCCce
Q psy11701        255 NQKELTGGRYTI---------------LETGDLKITDVAFAD-SGEYTCFARNKLGT  295 (745)
Q Consensus       255 ~~~~~~~~~~~~---------------~~~~~l~i~~~~~~d-~G~Y~C~~~n~~g~  295 (745)
                      ++..+.......               .....|.|.....+| .|.|+|.|.|....
T Consensus       185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             SSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            998775432111               011246777777677 99999999987543

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.62  E-value=4.1e-15  Score=119.05  Aligned_cols=91  Identities=25%  Similarity=0.422  Sum_probs=77.2

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCC--CeEeccC--CcEEEEccCCCCCCEEEEEEEEe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNY--GKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~--~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      |+.|...|.+..+.+|+++.|.|.+.|.|.|.+.|+|||++|....  ++.+...  ..+|.|.+++.+|+|.|+|.|.|
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   84 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN   84 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEE
Confidence            5566778899999999999999999999999999999999997643  5554333  35899999999999999999999


Q ss_pred             CCeeeEEEEEEEEEEe
Q psy11701        109 GVGEAKSYSIDLSVLA  124 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~  124 (745)
                      ..|... ..+.|.|..
T Consensus        85 ~~G~~~-~~~~l~V~~   99 (100)
T 3knb_A           85 EFGSDS-ATVNIHIRS   99 (100)
T ss_dssp             TTEEEE-EEEEEEEEC
T ss_pred             CCCEEE-EEEEEEEEE
Confidence            999876 668888753

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=146.67  Aligned_cols=167  Identities=18%  Similarity=0.278  Sum_probs=111.8

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEec------CC---------CC-CeEeccCCc-EEEEccCCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPI------NP---------SD-RISQGNYGK-SLIIKHVEFS   97 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i------~~---------~~-~~~~~~~~~-~L~i~~~~~~   97 (745)
                      ...|..+.+.+|++++|.|.+.+.+.+.+.|+|.  +..+      ..         .+ |+.+...+. .|.|.+++.+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~   84 (253)
T 3to4_D            5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS   84 (253)
T ss_dssp             EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS
T ss_pred             EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh
Confidence            3456778899999999999998888889999982  1110      00         11 444322211 1999999999


Q ss_pred             CCEEEEEEEEeCCe---e--eEEEEEEEEEE------ecCeEEec-CceeEeeCCCeEEEEEEEee-cCCC-eEEEEeCC
Q psy11701         98 DQGSYTCEVSNGVG---E--AKSYSIDLSVL------AAPYFTVE-PEFINAAEEETVTFECKASG-LPEP-EIHWVHNG  163 (745)
Q Consensus        98 d~G~Y~C~~~~~~g---~--~~~~~~~l~V~------~~p~~~~~-~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g  163 (745)
                      |+|.|+|.+.+..+   .  .......|.|.      .+|.+... +....+..|+.++|.|.+.| .|.+ .++|+++|
T Consensus        85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g  164 (253)
T 3to4_D           85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  164 (253)
T ss_dssp             SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             hCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECC
Confidence            99999999986532   1  11223456665      34554433 33333446799999999988 6666 89999999


Q ss_pred             EeccCCCCCC------------ceeecCceEEEccCCCCC-CEEEEEEEEeCC
Q psy11701        164 KPISQAPPNP------------RRKVGPNRITIENLRKSD-TGNYGCNATNSL  203 (745)
Q Consensus       164 ~~~~~~~~~~------------~~~~~~~~L~i~~v~~~d-~G~Y~C~~~~~~  203 (745)
                      ..+.......            ......+.|.|.....+| .|.|+|.|.|..
T Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          165 KEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             EECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            9886422110            111112467888887777 779999999864

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.62  E-value=3.9e-16  Score=147.66  Aligned_cols=174  Identities=17%  Similarity=0.318  Sum_probs=116.7

Q ss_pred             CCCCCeeEeecccee-EecCCcEEEEEEEeecC----CCeeEEEECCEecCCCCC--eEeccCC-----cEEEEccCCCC
Q psy11701         30 RHAPKQQYVTRKKEV-ALRNKKVELFCIFGGTP----LPQTIWSKDGVPINPSDR--ISQGNYG-----KSLIIKHVEFS   97 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~-v~~G~~~~l~C~~~g~p----~~~v~W~~~~~~i~~~~~--~~~~~~~-----~~L~i~~~~~~   97 (745)
                      ..+|..++..|.... +..|++++|.|.+.|++    ..+|+|+|||.++.....  .....++     +.|.|.....+
T Consensus        20 ~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~   99 (240)
T 4acp_A           20 LGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL   99 (240)
T ss_dssp             ---CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHH
T ss_pred             CCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhcc
Confidence            356888888888877 77899999999999874    238999999999854311  1111111     36888777778


Q ss_pred             CCEEEEEEEEeCCee-eEEEEEEE--EEEecCeEEecCceeEeeCCCeEEEEEEEee-cCCC-eEEEEeCCEeccCCCCC
Q psy11701         98 DQGSYTCEVSNGVGE-AKSYSIDL--SVLAAPYFTVEPEFINAAEEETVTFECKASG-LPEP-EIHWVHNGKPISQAPPN  172 (745)
Q Consensus        98 d~G~Y~C~~~~~~g~-~~~~~~~l--~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~~~  172 (745)
                      |.|.|+|+|.+..+. .....+.+  .+..+|.+.+.+......+|+.++|.|.+.+ +|.+ .+.|+|||+.+......
T Consensus       100 d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~  179 (240)
T 4acp_A          100 NGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKAT  179 (240)
T ss_dssp             HTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred             CCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCcc
Confidence            899999999987653 33343432  2446777766655444445999999999998 5654 89999999987532211


Q ss_pred             CceeecC------ceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        173 PRRKVGP------NRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       173 ~~~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ......+      +.|.|.....++.|.|+|+|.+..
T Consensus       180 ~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          180 PPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence            1111222      356666665567899999999875

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.62  E-value=6.2e-15  Score=141.11  Aligned_cols=168  Identities=17%  Similarity=0.292  Sum_probs=114.6

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe--------------CCEeccCCCCCCceee-----cCceEEEccC
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH--------------NGKPISQAPPNPRRKV-----GPNRITIENL  187 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~--------------~g~~~~~~~~~~~~~~-----~~~~L~i~~v  187 (745)
                      .+...|....+.+|++++|.|.+.+ +.+.+.|+|              ++..........++..     .+..|.|.++
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v   82 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   82 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence            3455677888999999999999876 777999998              2222221112223322     2457999999


Q ss_pred             CCCCCEEEEEEEEeCCc---eEEEEEEEEEee-----cCCeee-eCCCceEEecCceEEEEEEEee-cCCC-eEEEeeCC
Q psy11701        188 RKSDTGNYGCNATNSLG---YVYKDVYVNVLA-----HAPEIT-EAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQ  256 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g---~~~~~~~l~v~~-----~~p~~~-~~~~~~~v~~g~~~~l~C~~~~-~p~~-~i~W~~~~  256 (745)
                      +.+|+|.|+|.+.+..+   .......|.|..     .+|.+. ..+....+..|+.++|.|.+.+ .|.+ .+.|++++
T Consensus        83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g  162 (240)
T 3q5y_A           83 ELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG  162 (240)
T ss_dssp             CGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             ChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECC
Confidence            99999999999983211   222334566653     345554 3444445667999999999988 4555 78999999


Q ss_pred             EEccCceEE-----EeecC------cEEEcccCCCC-CEEEEEEEEeCCce
Q psy11701        257 KELTGGRYT-----ILETG------DLKITDVAFAD-SGEYTCFARNKLGT  295 (745)
Q Consensus       257 ~~~~~~~~~-----~~~~~------~l~i~~~~~~d-~G~Y~C~~~n~~g~  295 (745)
                      ..+......     ...++      .|.|.....+| .|.|+|.|.|....
T Consensus       163 ~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          163 KEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             EEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            887543221     11222      38888888888 77999999987543

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=3.8e-15  Score=124.42  Aligned_cols=110  Identities=19%  Similarity=0.275  Sum_probs=89.4

Q ss_pred             CCCCCCcceEEeCCCCCCC-CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcc
Q psy11701        487 YNGPPSEIISFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT  565 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (745)
                      |.|++|..+.+.|.++.|. +|.++++...+.++|.|+|++|..  |.|.+|.|+|+..+..... +..  ..+ .....
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~--g~i~~Y~v~~~~~~~~~~~-~~~--~~~-~~~~~   74 (119)
T 2ee2_A            1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE--KIVESYQIRYWAAHDKEEA-ANR--VQV-TSQEY   74 (119)
T ss_dssp             CCCCCSSCCCCCCCSCCCCCCCCSCEEEEEETTEEEEECCCCSC--TTCCEEEEEEEESSSCGGG-CEE--EEE-ETTCS
T ss_pred             CCCCCCCCEEEECCCcCCCCCCCcEEEEEccCCEEEEEecCCCC--CccceEEEEEEECCCcccC-cEE--EEc-CCCEe
Confidence            6788899899999998887 567999999999999999999987  7899999999876543211 111  011 34567


Q ss_pred             eeeecCCCCCccEEEEEEEEecCCCCCCcceeeeccc
Q psy11701        566 SAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPF  602 (745)
Q Consensus       566 ~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~  602 (745)
                      +++|.+|+|++.|.|+|.|+|.+|.|++|..+.+.+.
T Consensus        75 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  111 (119)
T 2ee2_A           75 SARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTK  111 (119)
T ss_dssp             EEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEECC
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCccCCCCCCEEEECC
Confidence            9999999999999999999999999999987765543

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.62  E-value=2.5e-15  Score=125.72  Aligned_cols=107  Identities=19%  Similarity=0.266  Sum_probs=88.9

Q ss_pred             CCCCCCcceEEeCCCCCCCCCCceeEE-EcCCceEEEEeeCCCCCC-CceeeEEEEEEEcCCc-ccCCcccccccccCCC
Q psy11701        487 YNGPPSEIISFVTPEGVPGTVQSLEAI-PLGSSAFYLKWVKPEQPN-GVLMGYKIKYQSVKGT-KVGPLLERLPYISDPT  563 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~~p~~~~~~-~~~~~~i~l~W~~p~~~~-g~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~  563 (745)
                      |.|++|..+.++|..++|++|.++.+. ..+.++|.|+|++|.+.+ .+|.+|.|+|+..... .|...       ....
T Consensus         1 G~s~~S~~~~~~t~~~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~~~-------~~~~   73 (120)
T 2crm_A            1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMI-------YSGA   73 (120)
T ss_dssp             CCCTTCSCCSCCSCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEE-------ECSS
T ss_pred             CCCCCcCCEEEEeCCCCCCCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCEEE-------Eecc
Confidence            678999999999999999999998887 778899999999998764 4899999999987542 33221       1345


Q ss_pred             cceeeecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       564 ~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      .+.+++.+|.|++.|.|+|.|+|..|.|++|..+...
T Consensus        74 ~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~  110 (120)
T 2crm_A           74 TREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ  110 (120)
T ss_dssp             CSEEEECSCCTTSCEEEEEEEEETTEECCCCCCCCCC
T ss_pred             ccEEEECCCCCCCEEEEEEEEEcCCccCCCcccEEEE
Confidence            7889999999999999999999999999998765443

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.62  E-value=3.8e-15  Score=143.53  Aligned_cols=169  Identities=17%  Similarity=0.219  Sum_probs=113.7

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--Ee---c------------CCCCCeEecc---CCcEEEEccCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VP---I------------NPSDRISQGN---YGKSLIIKHVE   95 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~---i------------~~~~~~~~~~---~~~~L~i~~~~   95 (745)
                      +...|..+.+.+|++++|.|.+. .+.+.+.|+|+.  ..   +            ....|+.+..   ...+|.|.+++
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   84 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   84 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence            34557778899999999999995 457799999842  11   1            0134666532   23589999999


Q ss_pred             CCCCEEEEEEEEeCC--eeeEEEEEEEEEE------ecCeEEec-CceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCE
Q psy11701         96 FSDQGSYTCEVSNGV--GEAKSYSIDLSVL------AAPYFTVE-PEFINAAEEETVTFECKASGL-PE-PEIHWVHNGK  164 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~--g~~~~~~~~l~V~------~~p~~~~~-~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~  164 (745)
                      .+|+|.|+|.+.+..  .........|.|.      .+|.+... |....+.+|+.++|.|.+.|. |. +.+.|+|+|+
T Consensus        85 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~  164 (252)
T 1oga_E           85 KNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK  164 (252)
T ss_dssp             SCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             hhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCE
Confidence            999999999998751  1111122346665      35665543 444455679999999999984 65 4999999999


Q ss_pred             eccCCCCCC------------ceeecCceEEEccCCCC-CCEEEEEEEEeCCce
Q psy11701        165 PISQAPPNP------------RRKVGPNRITIENLRKS-DTGNYGCNATNSLGY  205 (745)
Q Consensus       165 ~~~~~~~~~------------~~~~~~~~L~i~~v~~~-d~G~Y~C~~~~~~g~  205 (745)
                      .+.......            ......+.|.|...... |.|.|+|.|.|....
T Consensus       165 ~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          165 EVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             EECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             ECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            886432110            00011234777776654 678999999997643

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.62  E-value=1.9e-15  Score=143.20  Aligned_cols=166  Identities=15%  Similarity=0.223  Sum_probs=110.6

Q ss_pred             eeccceeEecCCcEEEEEEEeec--CCCeeEEEECC--Ee---cC-------------CCCCeEecc----CCcEEEEcc
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDG--VP---IN-------------PSDRISQGN----YGKSLIIKH   93 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~--~~---i~-------------~~~~~~~~~----~~~~L~i~~   93 (745)
                      ..|..+.+.+|++++|.|.+.+.  +.+.+.|+|..  ..   |.             ...|+.+..    ...+|.|.+
T Consensus         6 q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (230)
T 1ypz_F            6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS   85 (230)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred             ccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECc
Confidence            45677889999999999999765  56789999842  21   10             134555432    223899999


Q ss_pred             CCCCCCEEEEEEEEeC---CeeeEEEEEEEEEEe---------cCeEEe-cCceeEeeCCCeEEEEEEEeec-CC-CeEE
Q psy11701         94 VEFSDQGSYTCEVSNG---VGEAKSYSIDLSVLA---------APYFTV-EPEFINAAEEETVTFECKASGL-PE-PEIH  158 (745)
Q Consensus        94 ~~~~d~G~Y~C~~~~~---~g~~~~~~~~l~V~~---------~p~~~~-~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~  158 (745)
                      ++.+|+|.|.|.+.+.   ........+.|.|..         +|...+ .|....+.+|+.++|.|.+.+. |. +.+.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~  165 (230)
T 1ypz_F           86 LEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVY  165 (230)
T ss_dssp             CCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEE
T ss_pred             CChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEE
Confidence            9999999999999874   111112234677751         233222 2444445679999999999885 75 5999


Q ss_pred             EEe-CCEeccCCCCCCcee-----ecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        159 WVH-NGKPISQAPPNPRRK-----VGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       159 W~~-~g~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      |++ +|+.+..........     ...+.|.|..+.. + |.|+|.|.|....
T Consensus       166 W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          166 WKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             EECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             EEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            999 887665322111111     1124688888776 4 9999999987653

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.61  E-value=2.8e-15  Score=164.26  Aligned_cols=165  Identities=16%  Similarity=0.239  Sum_probs=120.8

Q ss_pred             eccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCC------------CCCeEeccCCcEEEEccCCCCCCEEEEEE
Q psy11701         39 TRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINP------------SDRISQGNYGKSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (745)
                      ......+.+|++++|.|.+ .+.|.+.+.|+|++..+..            ..+...... ++|.|.+++.+|+|.|+|.
T Consensus       372 l~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~L~i~~v~~~D~G~Y~C~  450 (581)
T 3o3u_N          372 SAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPN-GSLFLPAVGIQDEGIFRCQ  450 (581)
T ss_dssp             CCEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTT-SCEEESSCCGGGCEEEEEE
T ss_pred             HhcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCC-ceEEEeccccccCeEEEEE
Confidence            3456789999999999999 7889999999998753211            223444333 4799999999999999999


Q ss_pred             EEeCCeeeEEEEEEEEEEecCeE-EecCceeEeeCCCeE-EEEEEEee-cCCCeEEEEeCCEeccCCCCCCcee------
Q psy11701        106 VSNGVGEAKSYSIDLSVLAAPYF-TVEPEFINAAEEETV-TFECKASG-LPEPEIHWVHNGKPISQAPPNPRRK------  176 (745)
Q Consensus       106 ~~~~~g~~~~~~~~l~V~~~p~~-~~~~~~~~v~~G~~~-~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~------  176 (745)
                      +.+..+......+.|.|..+|.. ...+....+.+|+.. .|.|.+.+ .|.+.++|++||+.+..........      
T Consensus       451 ~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~  530 (581)
T 3o3u_N          451 AMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH  530 (581)
T ss_dssp             EECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEEC
T ss_pred             EEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEc
Confidence            99988887567789999875432 222333335566555 66999988 6999999999999987532221110      


Q ss_pred             ------ecCceEEEccCC-CCCCEEEEEEEEeCCc
Q psy11701        177 ------VGPNRITIENLR-KSDTGNYGCNATNSLG  204 (745)
Q Consensus       177 ------~~~~~L~i~~v~-~~d~G~Y~C~~~~~~g  204 (745)
                            ...+.|.|.+++ .++.|.|+|.|+|...
T Consensus       531 ~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~  565 (581)
T 3o3u_N          531 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLP  565 (581)
T ss_dssp             TTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred             CCCceEEEEEEEEEEeccccCCCceEEEEEeccCC
Confidence                  012469999998 5558899999999854

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.61  E-value=2.5e-15  Score=153.64  Aligned_cols=172  Identities=15%  Similarity=0.219  Sum_probs=120.6

Q ss_pred             CCeeEeecccee-EecCCcEEEEEEEeec-CCC---eeEEEECCEecCCCCC---eEecc----CCcEEEEccCCCCCCE
Q psy11701         33 PKQQYVTRKKEV-ALRNKKVELFCIFGGT-PLP---QTIWSKDGVPINPSDR---ISQGN----YGKSLIIKHVEFSDQG  100 (745)
Q Consensus        33 p~~~~~~~~~~~-v~~G~~~~l~C~~~g~-p~~---~v~W~~~~~~i~~~~~---~~~~~----~~~~L~i~~~~~~d~G  100 (745)
                      |..++..+.... +.+|++++|.|.+.|. |.|   .|.|+|++..+.....   .....    ....|.|..++.+|.|
T Consensus       167 p~v~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g  246 (376)
T 2aty_A          167 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGK  246 (376)
T ss_pred             cEEEEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCC
Confidence            555566666555 8999999999999887 333   7999999876542211   01101    1236999999999999


Q ss_pred             EEEEEEEeCCee-eEEEEEEE--EEEecCeEEecCceeEeeCCCeEEEEEEEeec-C-CCeEEEEeCCEeccCCCCCCce
Q psy11701        101 SYTCEVSNGVGE-AKSYSIDL--SVLAAPYFTVEPEFINAAEEETVTFECKASGL-P-EPEIHWVHNGKPISQAPPNPRR  175 (745)
Q Consensus       101 ~Y~C~~~~~~g~-~~~~~~~l--~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p-~~~v~W~~~g~~~~~~~~~~~~  175 (745)
                      .|+|.+.+..+. .....+.+  .+..+|.+.+.+......+|+.++|.|.+.|. | .+.|+|+|||+.+.........
T Consensus       247 ~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~  326 (376)
T 2aty_A          247 EFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPI  326 (376)
T ss_pred             EEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCce
Confidence            999999987553 22233333  55668888877776666679999999999984 4 4599999999987543221111


Q ss_pred             eecC------ceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        176 KVGP------NRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       176 ~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      ...+      ..|.|.....+|.|.|+|.|.|..-
T Consensus       327 ~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          327 MNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             ECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            1222      3577777777889999999998753

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.61  E-value=1.7e-15  Score=144.52  Aligned_cols=178  Identities=15%  Similarity=0.179  Sum_probs=116.4

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC----CeeEEEECC--Ee---c---C----------------CCCCeEec----
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL----PQTIWSKDG--VP---I---N----------------PSDRISQG----   83 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~----~~v~W~~~~--~~---i---~----------------~~~~~~~~----   83 (745)
                      .+..|..+.+.+|++|+|.|.+.+.+.    ..+.|+|..  ..   +   .                ..+|+.+.    
T Consensus         3 ~l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~   82 (239)
T 3tv3_H            3 QLQESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTP   82 (239)
T ss_dssp             EEEEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGG
T ss_pred             eEecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECC
Confidence            345677788999999999999987653    489999832  11   1   0                01344432    


Q ss_pred             cCCcEEEEccCCCCCCEEEEEEEEeCCe------------eeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEE
Q psy11701         84 NYGKSLIIKHVEFSDQGSYTCEVSNGVG------------EAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFEC  147 (745)
Q Consensus        84 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~g------------~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C  147 (745)
                      ....+|.|.+++.+|+|.|.|.+.+..+            ........|.|.    .+|.+...+....+..|+.++|.|
T Consensus        83 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C  162 (239)
T 3tv3_H           83 KNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC  162 (239)
T ss_dssp             GTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEE
T ss_pred             CCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEE
Confidence            1223699999999999999999976421            111122456664    356665555555566799999999


Q ss_pred             EEee-cCCC-eEEEEeCCEeccCCCCCC-----ceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        148 KASG-LPEP-EIHWVHNGKPISQAPPNP-----RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       148 ~~~~-~p~~-~v~W~~~g~~~~~~~~~~-----~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      .+.+ .|.+ .+.|+++|..+.......     ......+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus       163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          163 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence            9988 5544 689999987543211110     111122468899988888 9999999998876655554443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.61  E-value=5.9e-15  Score=119.68  Aligned_cols=93  Identities=22%  Similarity=0.404  Sum_probs=79.3

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .+|.|...|.+..+.+|+++.|.|.+.|.|.+.++|+|||..+........... ....|.|.++..+|+|.|+|.|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            478899999999999999999999999999999999999999975432211111 2347999999999999999999999


Q ss_pred             CceEEEEEEEEEee
Q psy11701        203 LGYVYKDVYVNVLA  216 (745)
Q Consensus       203 ~g~~~~~~~l~v~~  216 (745)
                      .|.....+.|.|..
T Consensus        92 ~G~~~~~~~l~V~~  105 (107)
T 3knb_B           92 AGEAYAAAAVTVLE  105 (107)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEc
Confidence            99999999998875

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.61  E-value=5.8e-15  Score=142.28  Aligned_cols=171  Identities=17%  Similarity=0.281  Sum_probs=112.9

Q ss_pred             CceeEeeCCCeEEEEEEEeec--CCCeEEEEeCC--E---ec-----------cCCCCCCceee------cCceEEEccC
Q psy11701        132 PEFINAAEEETVTFECKASGL--PEPEIHWVHNG--K---PI-----------SQAPPNPRRKV------GPNRITIENL  187 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~g--~---~~-----------~~~~~~~~~~~------~~~~L~i~~v  187 (745)
                      |....+.+|++++|.|.+.+.  +...+.|+|..  .   .+           .......++..      ....|.|.++
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (253)
T 3liz_H            7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL   86 (253)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            455678999999999999763  35689999832  1   11           00011123222      1235999999


Q ss_pred             CCCCCEEEEEEEEeCC----ceEEEEEEEEEe---ecCCeeeeCCCceEEecCceEEEEEEEee-cCCC-eEEEeeCCEE
Q psy11701        188 RKSDTGNYGCNATNSL----GYVYKDVYVNVL---AHAPEITEAPKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQKE  258 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~----g~~~~~~~l~v~---~~~p~~~~~~~~~~v~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~  258 (745)
                      +.+|+|.|.|.+.+..    ........|.|.   ..+|.+...+....+..|+.++|.|.+.+ .|.+ .+.|++++..
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~  166 (253)
T 3liz_H           87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  166 (253)
T ss_dssp             CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCee
Confidence            9999999999998752    222233566665   23566654444445667999999999998 5655 8999998863


Q ss_pred             c---------cCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        259 L---------TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK  305 (745)
Q Consensus       259 ~---------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~  305 (745)
                      +         ..+.+.  ..+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       167 ~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          167 SGVHTFPAVLQSDLYT--LSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             TTEEECCCEEETTEEE--EEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             cceEeCCccccCCeEE--EEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            2         112222  22569999999889 99999999998876666555544

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.60  E-value=3.5e-15  Score=145.39  Aligned_cols=169  Identities=17%  Similarity=0.309  Sum_probs=114.3

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecC-----CCeEEEEeCC--Ee---ccC------CCCCCceee----cCceEE
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLP-----EPEIHWVHNG--KP---ISQ------APPNPRRKV----GPNRIT  183 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p-----~~~v~W~~~g--~~---~~~------~~~~~~~~~----~~~~L~  183 (745)
                      ..+.+...|....+.+|++++|.|.+.+.+     .+.+.|+|+.  ..   +..      .....++..    ....|.
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~   93 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK   93 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence            345566778888899999999999998866     4799999853  21   110      001223322    234899


Q ss_pred             EccCCCCCCEEEEEEEEeCCceEE-EEEEEEEeecC--------C--------------eeeeCCCceEEecCceEEEEE
Q psy11701        184 IENLRKSDTGNYGCNATNSLGYVY-KDVYVNVLAHA--------P--------------EITEAPKDEYTVDGKTVVLTC  240 (745)
Q Consensus       184 i~~v~~~d~G~Y~C~~~~~~g~~~-~~~~l~v~~~~--------p--------------~~~~~~~~~~v~~g~~~~l~C  240 (745)
                      |.+++.+|+|.|.|.+.+..+... ....|.|...+        |              .....+....+.+|++++|.|
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C  173 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC  173 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence            999999999999999998754321 22455554311        1              122334566888999999999


Q ss_pred             EEeecCC--CeEEEeeCC--EEc--------------------cCceEEEeec-----CcEEEcccCCCCCEEEEEEEEe
Q psy11701        241 RVFGAPK--PEVNWIHNQ--KEL--------------------TGGRYTILET-----GDLKITDVAFADSGEYTCFARN  291 (745)
Q Consensus       241 ~~~~~p~--~~i~W~~~~--~~~--------------------~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~n  291 (745)
                      .+.+.+.  +.+.|+++.  ..+                    ...++....+     ..|.|.+++.+|+|.|.|.+.+
T Consensus       174 ~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~  253 (268)
T 1x9q_A          174 VTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGAS  253 (268)
T ss_dssp             EEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            9988753  689999842  111                    1235554332     3699999999999999999987


Q ss_pred             C
Q psy11701        292 K  292 (745)
Q Consensus       292 ~  292 (745)
                      .
T Consensus       254 ~  254 (268)
T 1x9q_A          254 Y  254 (268)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.60  E-value=4.6e-15  Score=124.33  Aligned_cols=110  Identities=20%  Similarity=0.241  Sum_probs=90.0

Q ss_pred             CCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCC-CCCCceeeEEEEEEEcCCcccCCcccccccccCCCcc
Q psy11701        487 YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPE-QPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT  565 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (745)
                      |.+..+..+.+.|.+.+|++|.++++...+.++|.|+|++|. +.+|.|.+|.|+|+..+...+....     .......
T Consensus         1 G~sgss~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~g~i~~Y~v~~~~~~~~~~~~~~-----~~~~~~~   75 (120)
T 1x5f_A            1 GSSGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVEN-----TSHPGEM   75 (120)
T ss_dssp             CCCCCCSSCCCCCCCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEE-----CSSTTCS
T ss_pred             CCCCCCCCEEecCCCCCCCCCCCcEEEecCCCEEEEEECCCCCCCCCcEEEEEEEEEECCCCCceEEE-----eccCCcc
Confidence            344455667788889999999999999999999999999998 8888999999999987544322211     2245678


Q ss_pred             eeeecCCCCCccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        566 SAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       566 ~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      .++|.+|+|++.|.|+|.|+|..|.|++|..+.+.+
T Consensus        76 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  111 (120)
T 1x5f_A           76 QVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET  111 (120)
T ss_dssp             EEEECSCCTTCEEEEEEEEECSSCEEEECCCEEEEC
T ss_pred             EEEeCCCCCCCEEEEEEEEECCCccCCCCCCEEEEe
Confidence            999999999999999999999999999988765543

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.60  E-value=4.9e-15  Score=121.31  Aligned_cols=98  Identities=26%  Similarity=0.494  Sum_probs=82.5

Q ss_pred             eCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCcc
Q psy11701        498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK  577 (745)
Q Consensus       498 ~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~  577 (745)
                      +|.+++|++|.++++...+.++|.|+|++|.+.+|.|.+|.|+|+..+...+....     + ....+++.|.+|.|++.
T Consensus         2 tT~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~-----~-~~~~~~~~l~~L~p~t~   75 (108)
T 2djs_A            2 SSGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSM-----A-RSQTNTARIDGLRPGMV   75 (108)
T ss_dssp             CSCCCCCCCCSCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCSTTCEE-----E-EESSSEEEEESCCTTCE
T ss_pred             ccCCCCCCCCcceEEEecCCCEEEEEECCCCCCCCeEEEEEEEEEECCCCCcceeE-----E-ecCccEEEEcCCCCCCE
Confidence            46788999999999999999999999999988889999999999987654322111     1 45668999999999999


Q ss_pred             EEEEEEEEecCCCCCCcceeeecc
Q psy11701        578 YRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       578 Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      |.|+|.|+|..|.|++|..+.+.+
T Consensus        76 Y~~~V~A~n~~G~g~~S~~~~~~T   99 (108)
T 2djs_A           76 YVVQVRARTVAGYGKFSGKMCFQT   99 (108)
T ss_dssp             EEEEEEEEESSCEEEECCCEEEEC
T ss_pred             EEEEEEEEeCCEECCCCCCEEEEe
Confidence            999999999999999988765543

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}

Probab=99.60  E-value=1.1e-14  Score=133.70  Aligned_cols=177  Identities=16%  Similarity=0.255  Sum_probs=126.5

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      .+|+++.+.. .+ ....|.|+++...  ++.+ .|.|+|...+    .|..... ......+.|.+|.+...|.++|+|
T Consensus         3 p~P~nv~~~s-~n-~~~iL~W~pp~~~--~~~v-~Y~V~y~~~~----~w~~~c~-~~~~~~c~lt~l~~~~~Y~~rV~A   72 (201)
T 3lqm_A            3 PPPENVRMNS-VN-FKNILQWESPAFA--KGQL-TFTAQYLSYR----IFQDKCM-QTTLTECDFSSLSKYGDHTLRVRA   72 (201)
T ss_dssp             CCCEEEEEEE-ET-TEEEEEEECCCCS--SSCC-EEEEEEEETT----EEEEEEE-EESSSEEECTTSCSSSCEEEEEEE
T ss_pred             CCCcccEEEE-EC-CceEEEECCCCCC--CCCe-EEEEEEEECC----CcccCcC-ccCCCEEECCCCccCCCEEEEEEE
Confidence            4688999876 44 4567999996532  3334 5999997652    2333222 335678899999999999999999


Q ss_pred             ecCCCCCCCCcceEEeC-CCCCCCCCCceeEEEcCCceEEEEeeCCCCCC-C---------ceeeEEEEEEEcCCcccCC
Q psy11701        483 FNGAYNGPPSEIISFVT-PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPN-G---------VLMGYKIKYQSVKGTKVGP  551 (745)
Q Consensus       483 ~n~~G~g~~S~~~~~~t-~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~-g---------~i~~Y~v~~~~~~~~~~~~  551 (745)
                      .|..|.|.++.. .+.. ....++|| .+.+. ...++|.|.|.+|...+ |         .+..|.|.|...+....  
T Consensus        73 ~~~~~~S~~s~~-~f~~~~~t~~~PP-~v~~~-~~~~si~v~w~~P~~~~~~~~~~~~~~~~~l~Y~v~y~~~~~~~~--  147 (201)
T 3lqm_A           73 EFADEHSDWVQI-TFSPVDDTIIGPP-GMQVE-VLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEK--  147 (201)
T ss_dssp             EETTEECCCEEE-EECHHHHSBCCCC-EEEEE-EETTEEEEEEECCEEECSSCEEEHHHHCTTCEEEEEEEETTCCCC--
T ss_pred             ecCCCcCcceee-eeeecccCeeCCC-EEEEE-EeCCEEEEEEcCCCccCCCcccCHHHhCCceEEEEEEEECCCCcE--
Confidence            999888888763 4431 12345555 67764 45689999999986432 4         38999999987654322  


Q ss_pred             cccccccccCCCcceeeecCCCCCccEEEEEEEEec--CCCCCCcceeeec
Q psy11701        552 LLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTK--AGDGAESKYLFYV  600 (745)
Q Consensus       552 ~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~--~G~g~~S~~~~~~  600 (745)
                      ..     + ......+.|.+|+|++.|.|+|.|.+.  .|.|.+|....+.
T Consensus       148 ~~-----~-~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~  192 (201)
T 3lqm_A          148 FQ-----I-TPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQ  192 (201)
T ss_dssp             EE-----E-CCSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCCEEEE
T ss_pred             EE-----E-EecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCCEeEE
Confidence            11     1 234578999999999999999999997  6888888776544

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.60  E-value=1.3e-15  Score=121.94  Aligned_cols=95  Identities=18%  Similarity=0.152  Sum_probs=76.6

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      .+|++|.++.+.. ..+++.|+|++|.+++++|++|.|+|+. ....|......   + ....++|++.+|.+++.|+||
T Consensus         6 ep~~pP~~l~v~~-~~~sv~L~W~pP~~~~~~I~gY~vey~~-~~~~W~~~~~~---~-~~~~t~~~v~~L~pg~~Y~FR   79 (108)
T 1v5j_A            6 SGLSPPRGLVAVR-TPRGVLLHWDPPELVPKRLDGYVLEGRQ-GSQGWEVLDPA---V-AGTETELLVPGLIKDVLYEFR   79 (108)
T ss_dssp             CCCCCCEEEEEEE-CSSSEEEEEECCSCCSSCCCBEEEEEEE-TTCCCEEEEEE---E-CSSCCEEECCCCCTTSCEECC
T ss_pred             CCCCCCcceEEEE-eCCEEEEEECCCCCCCCCCcEEEEEEEe-CCCCcEEeeee---c-CCCcCEEEeCCCCCCCEEEEE
Confidence            5568999999876 5678999999999888899999999998 33334322211   1 456789999999999999999


Q ss_pred             EEEEecCCCCCCcceeeeccc
Q psy11701        582 LAGYTKAGDGAESKYLFYVPF  602 (745)
Q Consensus       582 V~a~n~~G~g~~S~~~~~~~~  602 (745)
                      |.|+|.+|.|.+|+.+.+.+.
T Consensus        80 V~A~n~~G~s~pS~~~~v~T~  100 (108)
T 1v5j_A           80 LVAFAGSFVSDPSNTANVSTS  100 (108)
T ss_dssp             BEEEETTEEEEECSCCCCCCS
T ss_pred             EEEEcCCCCcCCCCCEEEEeC
Confidence            999999999999987655543

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.60  E-value=7.7e-16  Score=145.61  Aligned_cols=191  Identities=16%  Similarity=0.278  Sum_probs=108.7

Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEEEecCeEEecCceeE-eeCCCeEEEEEEEeecC----CCeEEEEeCCEeccCCCCCCc
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPEFIN-AAEEETVTFECKASGLP----EPEIHWVHNGKPISQAPPNPR  174 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V~~~p~~~~~~~~~~-v~~G~~~~l~C~~~~~p----~~~v~W~~~g~~~~~~~~~~~  174 (745)
                      |.|.|.+.+..+. .  .....+..++.+...|.... +..|+.++|.|.+.|..    ...|+|+|||..+........
T Consensus         1 ~~~~~~~~~~~~~-c--~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~   77 (240)
T 4acp_A            1 GTKSCDKTHTCPP-C--PAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR   77 (240)
T ss_dssp             -------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCC
T ss_pred             CceeeeeeecCCC-C--CccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccc
Confidence            7899999876543 1  11111222333444555555 66799999999999853    348999999998854321111


Q ss_pred             ee------ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE---EeecCCeeeeCCCceEEecCceEEEEEEEeec
Q psy11701        175 RK------VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN---VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA  245 (745)
Q Consensus       175 ~~------~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~---v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~  245 (745)
                      ..      ...+.|.|.....+|.|.|+|.|.+..+.......+.   ....+|.+...+.......|+.++|.|.+.+.
T Consensus        78 ~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf  157 (240)
T 4acp_A           78 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF  157 (240)
T ss_dssp             EEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE
T ss_pred             eECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEE
Confidence            11      1124688888878889999999999876432222221   12246666655544433458999999999985


Q ss_pred             -CC-CeEEEeeCCEEccCce---EEEeecC------cEEEcccCCCCCEEEEEEEEeCC
Q psy11701        246 -PK-PEVNWIHNQKELTGGR---YTILETG------DLKITDVAFADSGEYTCFARNKL  293 (745)
Q Consensus       246 -p~-~~i~W~~~~~~~~~~~---~~~~~~~------~l~i~~~~~~d~G~Y~C~~~n~~  293 (745)
                       |. ..+.|++++..+....   .....++      .|.|......+.|.|+|.|.+..
T Consensus       158 ~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          158 YPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             BSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             eCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence             54 3799999998864321   1112233      35565555567899999999875

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=6.4e-15  Score=120.66  Aligned_cols=98  Identities=19%  Similarity=0.375  Sum_probs=81.1

Q ss_pred             eCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCcc
Q psy11701        498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK  577 (745)
Q Consensus       498 ~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~  577 (745)
                      +|.+++|++|.++++...+.++|.|+|++|...+|.|.+|.|+|+..+......+..    + ....+.++|.+|+|++.
T Consensus         2 tT~~~~P~~p~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~----~-~~~~~~~~i~~L~p~t~   76 (109)
T 2e7h_A            2 SSGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRF----L-KTSENRAELRGLKRGAS   76 (109)
T ss_dssp             CSSCCSSCCCCCCEEEEEETTEEEEECCCCCCSSSCCCEEEEEEEETTCCSTTTSEE----E-EESSSEEEEESCCTTSC
T ss_pred             CCCCCCCCCCCccEEEecCCCEEEEEeCCCCCCCCcEeEEEEEEEECCCCCCceeEE----E-ccCCCEEEECCCCCCCe
Confidence            477889999999999999999999999999988899999999999876222221211    1 33457999999999999


Q ss_pred             EEEEEEEEecCCCCCCcceeeec
Q psy11701        578 YRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       578 Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      |.|+|+|+|.+|.|++|..+.+.
T Consensus        77 Y~~~V~A~n~~G~g~~S~~~~~~   99 (109)
T 2e7h_A           77 YLVQVRARSEAGYGPFGQEHHSQ   99 (109)
T ss_dssp             EEEEEEEECSSCBCCCCSCEECC
T ss_pred             EEEEEEEEeCCccCCCCCCEEEE
Confidence            99999999999999999876544

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.60  E-value=5.3e-15  Score=144.80  Aligned_cols=161  Identities=20%  Similarity=0.324  Sum_probs=110.8

Q ss_pred             CceeEeeCCCeEEEEEEEeec--CCCeEEEEeCC--Eecc---C-C----------CCCCceeec------CceEEEccC
Q psy11701        132 PEFINAAEEETVTFECKASGL--PEPEIHWVHNG--KPIS---Q-A----------PPNPRRKVG------PNRITIENL  187 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~g--~~~~---~-~----------~~~~~~~~~------~~~L~i~~v  187 (745)
                      |....+.+|++++|.|.+.+.  +.+.+.|+|..  ....   . .          ....++...      ...|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            777889999999999999874  55799999842  1110   0 0          001122221      137999999


Q ss_pred             CCCCCEEEEEEEEeC---------CceEEEEEEEEEee--------------cCCeeeeCCCceEEecCceEEEEEEEee
Q psy11701        188 RKSDTGNYGCNATNS---------LGYVYKDVYVNVLA--------------HAPEITEAPKDEYTVDGKTVVLTCRVFG  244 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~---------~g~~~~~~~l~v~~--------------~~p~~~~~~~~~~v~~g~~~~l~C~~~~  244 (745)
                      +.+|+|.|.|.+.+.         .........|.|..              .++.+...+. ..+.+|++++|.|.+.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence            999999999999886         11122234566654              2445555555 78899999999999987


Q ss_pred             -cC-CCeEEEeeC--CEEcc-------------CceEEEeecC---cEEEcccCCCCCEEEEEEEEeCC
Q psy11701        245 -AP-KPEVNWIHN--QKELT-------------GGRYTILETG---DLKITDVAFADSGEYTCFARNKL  293 (745)
Q Consensus       245 -~p-~~~i~W~~~--~~~~~-------------~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~~~n~~  293 (745)
                       .+ .+.+.|++.  +..+.             ..++.....+   .|.|.+++.+|+|.|.|.+.+..
T Consensus       166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence             33 368999873  22111             2344443333   49999999999999999999875

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.60  E-value=1.5e-15  Score=141.52  Aligned_cols=169  Identities=17%  Similarity=0.274  Sum_probs=104.4

Q ss_pred             CeEEecCceeEe--eCCCeEEEEEEEeecC----CCeEEEEeCCEeccCCCCCCceeecCceEEEc------cCCCCCCE
Q psy11701        126 PYFTVEPEFINA--AEEETVTFECKASGLP----EPEIHWVHNGKPISQAPPNPRRKVGPNRITIE------NLRKSDTG  193 (745)
Q Consensus       126 p~~~~~~~~~~v--~~G~~~~l~C~~~~~p----~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~------~v~~~d~G  193 (745)
                      |.+...|....+  .+|+++.|.|.+.|.+    .+.+.|+|++..+............++.|.+.      ....+|+|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g   81 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence            444444433333  7999999999999865    34999999998776432111122233444443      33334499


Q ss_pred             EEEEEEEeCCceEEEEEEEEE---eecCCeeeeCCCceEEecCceEEEEEEEeec-CC-CeEEEeeCCEEccCce---EE
Q psy11701        194 NYGCNATNSLGYVYKDVYVNV---LAHAPEITEAPKDEYTVDGKTVVLTCRVFGA-PK-PEVNWIHNQKELTGGR---YT  265 (745)
Q Consensus       194 ~Y~C~~~~~~g~~~~~~~l~v---~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~---~~  265 (745)
                      .|+|.|.|..+.......+..   ...+|.+...+.......|..++|.|.+.+. |. +.+.|++++..+....   ..
T Consensus        82 ~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~  161 (207)
T 1l6x_A           82 EYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPV  161 (207)
T ss_dssp             CEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCE
T ss_pred             eEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCce
Confidence            999999998775422223321   2235665544333222346679999999985 44 4899999998775321   12


Q ss_pred             EeecCc------EEEcccCCCCCEEEEEEEEeCCc
Q psy11701        266 ILETGD------LKITDVAFADSGEYTCFARNKLG  294 (745)
Q Consensus       266 ~~~~~~------l~i~~~~~~d~G~Y~C~~~n~~g  294 (745)
                      ...+++      |.|......|.|.|+|.|.|...
T Consensus       162 ~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          162 LDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             ECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence            233443      44444444679999999998754

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.60  E-value=1.9e-14  Score=135.64  Aligned_cols=162  Identities=21%  Similarity=0.369  Sum_probs=109.4

Q ss_pred             cCceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Eecc------C----------CCCCCceee------cCceEEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KPIS------Q----------APPNPRRKV------GPNRITI  184 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~~~------~----------~~~~~~~~~------~~~~L~i  184 (745)
                      .|....+.+|++++|.|.+.+.+  .+.+.|+|..  ....      .          .....++..      ....|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            34556789999999999998743  5699999732  1110      0          001123322      1236999


Q ss_pred             ccCCCCCCEEEEEEEEeCC--ceEEEEEEEEEee---cCCeee-eCCCceEEecCceEEEEEEEee-cCC--CeEEEeeC
Q psy11701        185 ENLRKSDTGNYGCNATNSL--GYVYKDVYVNVLA---HAPEIT-EAPKDEYTVDGKTVVLTCRVFG-APK--PEVNWIHN  255 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~--g~~~~~~~l~v~~---~~p~~~-~~~~~~~v~~g~~~~l~C~~~~-~p~--~~i~W~~~  255 (745)
                      .+++.+|+|.|.|.+.+..  ........|.|..   .+|.+. ..+...  .+|+.++|.|.+.+ .|.  +.+.|+++
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~  163 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSES  163 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence            9999999999999999763  1222234566642   344444 333333  68999999999998 665  38999998


Q ss_pred             CEEcc-----------CceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceE
Q psy11701        256 QKELT-----------GGRYTILETGDLKITDVAFADSGEYTCFARNKLGTA  296 (745)
Q Consensus       256 ~~~~~-----------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~  296 (745)
                      +..+.           ++.+..  ...|.|......|.|.|+|.|.|..+..
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          164 GQGVTARNFPPSQDASGDLYTT--SSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             STTCEEEECCCEECSSSSCEEE--EEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             CEECceEEcCceeeCCCCcEEE--EEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            86552           222222  2358999999999999999999987653

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.60  E-value=1.2e-14  Score=137.85  Aligned_cols=176  Identities=14%  Similarity=0.164  Sum_probs=116.0

Q ss_pred             EeeccceeEecCCcEEEEEEEeec--CCCeeEEEECC--E---ec---C-----------CCCCeEeccC----CcEEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDG--V---PI---N-----------PSDRISQGNY----GKSLII   91 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~--~---~i---~-----------~~~~~~~~~~----~~~L~i   91 (745)
                      +..|..+.+.+|++|+|.|.+.+.  ....+.|+|..  .   .+   .           ..+|+.+...    ..+|+|
T Consensus         4 v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (230)
T 3n9g_H            4 LVQSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMEL   83 (230)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EEecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEE
Confidence            445566889999999999999753  34589999731  1   11   0           0245554221    236999


Q ss_pred             ccCCCCCCEEEEEEEEeCC-------eeeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEee-cC-CCeEE
Q psy11701         92 KHVEFSDQGSYTCEVSNGV-------GEAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASG-LP-EPEIH  158 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~-------g~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p-~~~v~  158 (745)
                      .+++.+|+|.|.|.+.+..       .........|.|.    .+|.+...+....+.+|+.++|.|.+.+ .| .+.+.
T Consensus        84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~  163 (230)
T 3n9g_H           84 SSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  163 (230)
T ss_dssp             CSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEE
T ss_pred             CCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEE
Confidence            9999999999999998743       1112233456664    3555554444445678999999999987 44 34799


Q ss_pred             EEeCCEeccCCCCCC-ce------eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        159 WVHNGKPISQAPPNP-RR------KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       159 W~~~g~~~~~~~~~~-~~------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      |  ++..+....... ..      ....+.|.|.....+| |.|+|.|.|..+.......+.|.
T Consensus       164 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          164 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             E--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence            9  555443211100 11      1112478999999999 99999999988776666665554

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.59  E-value=1.7e-15  Score=144.03  Aligned_cols=177  Identities=13%  Similarity=0.173  Sum_probs=111.9

Q ss_pred             EeeccceeEecCCcEEEEEEEeecC--CCee--EEEECC--E---ec-----CC-----------CCCeEecc----CCc
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTP--LPQT--IWSKDG--V---PI-----NP-----------SDRISQGN----YGK   87 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v--~W~~~~--~---~i-----~~-----------~~~~~~~~----~~~   87 (745)
                      +..+..+.+.+|++|+|.|.+.+.+  ...+  .|+|..  .   .+     ..           .+|+.+..    ...
T Consensus         4 v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   83 (232)
T 3qhz_H            4 LRESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQV   83 (232)
T ss_dssp             EEEECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEE
T ss_pred             EEcCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEE
Confidence            4556667899999999999997642  2445  999832  1   11     00           13555432    223


Q ss_pred             EEEEccCCCCCCEEEEEEEEeCCe-------eeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEeec-C-C
Q psy11701         88 SLIIKHVEFSDQGSYTCEVSNGVG-------EAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASGL-P-E  154 (745)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~g-------~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p-~  154 (745)
                      +|.|.+++.+|+|.|.|.+.+..+       ........|.|.    .+|.+...+....+..|+.++|.|.+.+. | .
T Consensus        84 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~  163 (232)
T 3qhz_H           84 VLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  163 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSC
T ss_pred             EEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCC
Confidence            799999999999999999986521       112233456665    45666544444456789999999999874 4 2


Q ss_pred             CeEEEEeCCEeccCCCCC-----CceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        155 PEIHWVHNGKPISQAPPN-----PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       155 ~~v~W~~~g~~~~~~~~~-----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      ..+.|+++|..+......     .......+.|.|......| |.|+|.|.|..+.......|.+
T Consensus       164 ~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          164 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             CEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             eEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            378899998644211111     0111122478899998888 9999999999877666655544

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.59  E-value=1.6e-14  Score=137.02  Aligned_cols=171  Identities=18%  Similarity=0.292  Sum_probs=110.5

Q ss_pred             CceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Ee---cc----------CCCCCCceeec------CceEEEccCC
Q psy11701        132 PEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KP---IS----------QAPPNPRRKVG------PNRITIENLR  188 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~---~~----------~~~~~~~~~~~------~~~L~i~~v~  188 (745)
                      |....+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +.          ......++...      ...|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence            4556789999999999998754  5689999842  21   10          00112333321      2389999999


Q ss_pred             CCCCEEEEEEEEeCCc------eEEEEEEEEEee---cCCeeeeCCCceEEecC-ceEEEEEEEeec-CCC-eEEEee-C
Q psy11701        189 KSDTGNYGCNATNSLG------YVYKDVYVNVLA---HAPEITEAPKDEYTVDG-KTVVLTCRVFGA-PKP-EVNWIH-N  255 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g------~~~~~~~l~v~~---~~p~~~~~~~~~~v~~g-~~~~l~C~~~~~-p~~-~i~W~~-~  255 (745)
                      .+|+|.|.|.+.+..+      .......|.|..   .+|.+........+..| +.++|.|.+.+. |.+ .+.|++ +
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~  166 (232)
T 1dn0_B           87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKN  166 (232)
T ss_dssp             GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             cccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCC
Confidence            9999999999984221      112235677754   23554432212234578 999999999886 765 999999 8


Q ss_pred             CEEccC----------ceEEEeecCcEEEcccCC--CCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        256 QKELTG----------GRYTILETGDLKITDVAF--ADSGEYTCFARNKLGTAQGSGSLTV  304 (745)
Q Consensus       256 ~~~~~~----------~~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~n~~g~~~~~~~l~v  304 (745)
                      +..+..          +.+.  ..+.|.|.....  +|.|.|+|.|.|..+.......+.|
T Consensus       167 g~~l~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~  225 (232)
T 1dn0_B          167 NSDISSTRGFPSVLRGGKYA--ATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV  225 (232)
T ss_dssp             SCEECCEEECCCEEETTEEE--EEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred             CCceeeEEECCccccCCcEE--EEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence            876643          1111  123588888876  7899999999999887655554444

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.59  E-value=1.1e-14  Score=122.59  Aligned_cols=108  Identities=21%  Similarity=0.334  Sum_probs=86.3

Q ss_pred             CcceEEeCCCCCCC-CCCceeEEEcCCceEEEEeeCCCC--CCCceeeEEEEEEEcCCcccCCcccccccccCCCcceee
Q psy11701        492 SEIISFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPEQ--PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAK  568 (745)
Q Consensus       492 S~~~~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (745)
                      |..+.++|.+++|. +|.++++...+.++|.|+|++|..  .+|.|.+|.|+|+..+...+..+....... .+....+.
T Consensus         3 S~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   81 (122)
T 1va9_A            3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKA-TGDSEVYT   81 (122)
T ss_dssp             CCCCSSCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCC-CSSEEEEE
T ss_pred             CCCEEEECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEec-CCceeEEE
Confidence            44566888888886 789999999999999999999986  688999999999987754433322111111 34568999


Q ss_pred             ecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        569 LAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       569 l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      |.+|+|++.|.|+|.|+|..|.|++|..+...
T Consensus        82 i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~  113 (122)
T 1va9_A           82 LDNLKKFAQYGVVVQAFNRAGTGPSSSEINAT  113 (122)
T ss_dssp             EESCCSSCCEEEEEEEEETTEECCCCCCEECC
T ss_pred             eCCCCCCCEEEEEEEEEcCCCCCCCccCEEEE
Confidence            99999999999999999999999998876544

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.59  E-value=1.1e-14  Score=139.40  Aligned_cols=177  Identities=15%  Similarity=0.179  Sum_probs=113.9

Q ss_pred             EeeccceeEecCCcEEEEEEEeec--CCCeeEEEEC--CEe---c---C-----------CCCCeEecc----CCcEEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKD--GVP---I---N-----------PSDRISQGN----YGKSLII   91 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~--~~~---i---~-----------~~~~~~~~~----~~~~L~i   91 (745)
                      +..|..+.+.+|++|+|.|.+.+.  +...+.|+|.  +..   +   .           ..+|+.+..    ...+|+|
T Consensus         3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   82 (248)
T 3u2s_H            3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQM   82 (248)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEE
Confidence            456778889999999999999763  3458999973  211   1   0           124555432    2236999


Q ss_pred             ccCCCCCCEEEEEEEEeCC---------------------eeeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEE
Q psy11701         92 KHVEFSDQGSYTCEVSNGV---------------------GEAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFE  146 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~---------------------g~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~  146 (745)
                      .+++.+|+|.|.|.+.+..                     .........|.|.    .+|.+...+....+..|+.++|.
T Consensus        83 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~  162 (248)
T 3u2s_H           83 NSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALG  162 (248)
T ss_dssp             CSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEE
T ss_pred             CCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEE
Confidence            9999999999999998631                     1112233566665    35666555454456679999999


Q ss_pred             EEEee-cC-CCeEEEEeCCEeccCCCCC-----CceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        147 CKASG-LP-EPEIHWVHNGKPISQAPPN-----PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       147 C~~~~-~p-~~~v~W~~~g~~~~~~~~~-----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      |.+.+ .| ...+.|+++|..+......     .......+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus       163 C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  236 (248)
T 3u2s_H          163 CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  236 (248)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence            99987 45 3589999998654311111     0111122468888888888 9999999998776655544433

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.59  E-value=6.9e-15  Score=121.48  Aligned_cols=105  Identities=21%  Similarity=0.319  Sum_probs=85.6

Q ss_pred             CCCCCCcceEEeCCCCCCC-CCCceeEEEcCCceEEEEeeCC--CCCCCceeeEEEEEEEcCCcccCCcccccccccCCC
Q psy11701        487 YNGPPSEIISFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT  563 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~  563 (745)
                      |.|++|..+.++|.+++|+ +|.++++.. +.++|.|+|++|  ...+|.|++|+|+|+..+.... ..      + ...
T Consensus         1 G~G~~S~~v~~~T~e~~P~~~P~~v~~~~-~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~-~~------~-~~~   71 (117)
T 1wj3_A            1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNV-QV------L-NTN   71 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSCBCCE-ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSC-EE------E-EES
T ss_pred             CcCCCCCCEEEEecCCCCCCCCccEEEEE-eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCC-eE------E-eCC
Confidence            6788999999999999997 678888877 788999999999  4589999999999998764432 11      1 233


Q ss_pred             cceeeecCCCCCccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       564 ~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      ...+.+. |.+++.|.|+|.|+|.+|.|++|+.+.+.+
T Consensus        72 ~~~~~~~-L~~~t~Y~~~V~A~n~~G~Gp~S~~v~~~T  108 (117)
T 1wj3_A           72 KTSAELV-LPIKEDYIIEVKATTDGGDGTSSEQIRIPR  108 (117)
T ss_dssp             SSEEEEE-CCCSSCEEEEEEEEESSCCCCBCCCEEECC
T ss_pred             CcEEEEE-CCCCCEEEEEEEEECCCccCCCCCCEEEEc
Confidence            4577887 999999999999999999999997765443

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.59  E-value=1.2e-14  Score=116.31  Aligned_cols=92  Identities=23%  Similarity=0.393  Sum_probs=77.7

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCc-eee--cCceEEEccCCCCCCEEEEEEEEe
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR-RKV--GPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~-~~~--~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      ||.|...|.+..+.+|+++.|.|.+.|.|.+.++|+|||+.+........ ...  ....|.|.+++.+|+|.|+|.|.|
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   84 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN   84 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEE
Confidence            67888889999999999999999999999999999999999875432211 111  234799999999999999999999


Q ss_pred             CCceEEEEEEEEEee
Q psy11701        202 SLGYVYKDVYVNVLA  216 (745)
Q Consensus       202 ~~g~~~~~~~l~v~~  216 (745)
                      ..|.....+.|.|..
T Consensus        85 ~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           85 EFGSDSATVNIHIRS   99 (100)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEEE
Confidence            999999888888863

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.59  E-value=1.7e-15  Score=143.90  Aligned_cols=163  Identities=13%  Similarity=0.204  Sum_probs=108.5

Q ss_pred             CceeE-eeCCCeEEEEEEEeec---CCC-eEEEEeCCEeccCCCCCC------ceeecCceEEEccCCCCCCEEEEEEEE
Q psy11701        132 PEFIN-AAEEETVTFECKASGL---PEP-EIHWVHNGKPISQAPPNP------RRKVGPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       132 ~~~~~-v~~G~~~~l~C~~~~~---p~~-~v~W~~~g~~~~~~~~~~------~~~~~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      |.... +.+|++++|.|.+.+.   |.+ .|.|+|++..+.......      ......+.|.|.++..+|+|.|+|.+.
T Consensus        23 p~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~  102 (239)
T 1i1c_A           23 PKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVN  102 (239)
T ss_dssp             CCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             CChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEe
Confidence            33333 7899999999999886   765 999999987654221110      111223579999999999999999999


Q ss_pred             eCCceEEEEEEEE---EeecCCeeeeCCCceEEecCceEEEEEEEeec-CC-CeEEEeeCCEEccCce---EEEeecCc-
Q psy11701        201 NSLGYVYKDVYVN---VLAHAPEITEAPKDEYTVDGKTVVLTCRVFGA-PK-PEVNWIHNQKELTGGR---YTILETGD-  271 (745)
Q Consensus       201 ~~~g~~~~~~~l~---v~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~---~~~~~~~~-  271 (745)
                      +..+.......+.   ....+|.+...+.......|+.++|.|.+.+. |. ..+.|+++|..+....   .....+++ 
T Consensus       103 ~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~  182 (239)
T 1i1c_A          103 SGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSY  182 (239)
T ss_dssp             CSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCE
T ss_pred             cccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCE
Confidence            9877532222221   12246666555444333458899999999985 44 4899999998875421   12233444 


Q ss_pred             -----EEEcccCCCCCEEEEEEEEeCCc
Q psy11701        272 -----LKITDVAFADSGEYTCFARNKLG  294 (745)
Q Consensus       272 -----l~i~~~~~~d~G~Y~C~~~n~~g  294 (745)
                           |.|.....+|.|.|+|.|.|...
T Consensus       183 ~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          183 FLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             EEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence                 34444444578999999998764

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=99.59  E-value=5.6e-14  Score=129.87  Aligned_cols=186  Identities=13%  Similarity=0.060  Sum_probs=118.1

Q ss_pred             CCCCCceeEEee-cCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCC---------CceeEEEEccCceeEEEeccccc
Q psy11701        403 EAPSNFTLIQVI-DAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGE---------GSIRELIVNKGESTTTEVDKFVP  472 (745)
Q Consensus       403 ~~P~~~~~~~~~-~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~L~~  472 (745)
                      +.|.++.+.. . ....++++|+++......+  ..|.+.|+.....-         ...............+.+..+..
T Consensus         2 ~~~~nlsC~~-~~~~~~~~C~W~~g~~~~l~t--~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~~   78 (206)
T 3v6o_A            2 DVNINISCET-DGYLTKMTCRWSTSTIQSLAE--STLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFL   78 (206)
T ss_dssp             --CCCCEEEE-CTTSSCEEEEECCCC----------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCCT
T ss_pred             CCCEEEEEEE-CCCCcEEEEEecCCCcCCccc--ccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHHh
Confidence            4578888876 5 4689999999965433322  16888777643100         00122223234556788888888


Q ss_pred             CcceeEEEEEecCCCCCCCCcceEEe-CCCCCCCCCCceeEEEc-CCceEEEEeeCCCCCCCceeeEEEEEEEcCC-ccc
Q psy11701        473 ASKNFARVLAFNGAYNGPPSEIISFV-TPEGVPGTVQSLEAIPL-GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKG-TKV  549 (745)
Q Consensus       473 ~~~Y~~~V~a~n~~G~g~~S~~~~~~-t~~~~P~~p~~~~~~~~-~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~-~~~  549 (745)
                      .+.|.|+|.|.|..|.+. |..+.+. .....|.||.++.+... ..+.+.|+|++|.... .+..|.|+|+..+. ..|
T Consensus        79 ~~~Y~~~V~a~N~~G~~~-s~~~~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~~~~-~~l~yev~y~~~~~~~~w  156 (206)
T 3v6o_A           79 LSGYTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPE-NNLQFQIRYGLSGKEVQW  156 (206)
T ss_dssp             TSCEEEEEEEC---CCEE-CCCEEECGGGGBCCCCCCSCEEEEETTTTEEEEEC---------CEEEEEEEEESSSSCCC
T ss_pred             cccEEEEEEEEcCCcccc-CCcccEeecceEcCCCCCceEeEEecCCCeEEEEECCCCCCC-CcEEEEEEEEECCCCCce
Confidence            899999999999999865 4445554 34457889999988765 5789999999986533 46899999998752 232


Q ss_pred             CCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceee
Q psy11701        550 GPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF  598 (745)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~  598 (745)
                      ....     ........+.+.+|.|++.|.|+|+|.+..|.|.+|+++.
T Consensus       157 ~~~~-----~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeWS~  200 (206)
T 3v6o_A          157 KMYE-----VYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSN  200 (206)
T ss_dssp             EEEE-----ECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCCCCC
T ss_pred             EEEe-----cccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCCCc
Confidence            2211     1122335689999999999999999999989999888764

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=99.58  E-value=1.3e-14  Score=136.83  Aligned_cols=185  Identities=14%  Similarity=0.138  Sum_probs=118.6

Q ss_pred             eccCCCCCCceeEEeecCceeEEEEEeCCCCCccee-eeeEEEEEEeccCCC--CceeEEEE---ccCceeEEEeccccc
Q psy11701        399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGH-FRGYKVQTWTEKDGE--GSIRELIV---NKGESTTTEVDKFVP  472 (745)
Q Consensus       399 ~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~-i~~y~i~~~~~~~~~--~~~~~~~~---~~~~~~~~~i~~L~~  472 (745)
                      ..||..|+++.+.. ....+++++|+++.  ..+.. ...|.+.|+......  ........   .......+...+|.+
T Consensus        27 ~~pP~~P~~l~C~~-~~~~~~~c~W~p~~--~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~  103 (236)
T 1axi_B           27 TNSSGEPKFTKCRS-PERETFSCHWTDEV--HHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSI  103 (236)
T ss_dssp             -----CCCEEEEEB-SSSSCEEEEECCC----------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCS
T ss_pred             CCCCCCCcCCeEEe-CCCCEEEEEecCCC--CCCCCCCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCcc
Confidence            36889999998876 78899999999742  22222 247888887653221  11111110   012345566778899


Q ss_pred             CcceeEEEEEecCCCCCCCCcceEEe-CCCCCCCCCCceeE--EEcCC----ceEEEEeeCCCC---CCC-ceeeEEEEE
Q psy11701        473 ASKNFARVLAFNGAYNGPPSEIISFV-TPEGVPGTVQSLEA--IPLGS----SAFYLKWVKPEQ---PNG-VLMGYKIKY  541 (745)
Q Consensus       473 ~~~Y~~~V~a~n~~G~g~~S~~~~~~-t~~~~P~~p~~~~~--~~~~~----~~i~l~W~~p~~---~~g-~i~~Y~v~~  541 (745)
                      .+.|.|+|.| | .+   .+....+. +....|.||.++.+  ...+.    ..+.|+|++|..   .+| .+..|.|+|
T Consensus       104 ~~~Y~~~V~a-N-~~---~s~~~~~~~~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry  178 (236)
T 1axi_B          104 AIPYCIKLTS-N-GG---TVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQY  178 (236)
T ss_dssp             SSEEEEEEEE-T-TE---EEEEEEEEGGGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEE
T ss_pred             cceEEEEEEE-C-Cc---cCCCeEeecccccccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEE
Confidence            9999999999 8 22   23334443 33457889999953  33332    349999999863   255 689999999


Q ss_pred             EEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCC--CCCCcceee
Q psy11701        542 QSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAG--DGAESKYLF  598 (745)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G--~g~~S~~~~  598 (745)
                      +..+...|....       ....+++.|.+|.|++.|.|+|+|.+..|  .|.+|..+.
T Consensus       179 ~~~~~~~w~~~~-------~~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~~~  230 (236)
T 1axi_B          179 KEVNETKWKMMD-------PILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLY  230 (236)
T ss_dssp             EETTCSSCEECC-------CBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCEE
T ss_pred             EECCCCceEEEe-------ccCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCCEE
Confidence            987654332211       22458899999999999999999999988  666665543

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=5.8e-15  Score=122.65  Aligned_cols=107  Identities=24%  Similarity=0.388  Sum_probs=90.2

Q ss_pred             CCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcce
Q psy11701        487 YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS  566 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (745)
                      |.|+.|..+.++|.+++|++|.++++...+.++|.|+|++|.+  +.|.+|.|+|+..+...+....       ....+.
T Consensus         1 G~g~~S~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~--~~i~~Y~v~~~~~~~~~~~~~~-------~~~~~~   71 (115)
T 1x5z_A            1 GSSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRS--DTIANYELVYKDGEHGEEQRIT-------IEPGTS   71 (115)
T ss_dssp             CCCCCCCCCCCCCCSCCCCCCEEEEEECSSSSEEEEEEECCSC--CCCCEEEECBEESSSCCCBCCE-------ECSSSE
T ss_pred             CCCCCCCCEEEECCCCCCCCCccCEeeeCCCCEEEEEEcCCCC--CCccEEEEEEEeCCCCCceEEe-------cCCCcE
Confidence            6788999999999999999999999999999999999999975  3899999999987654432111       334589


Q ss_pred             eeecCCCCCccEEEEEEEEecCCCCCCcceeeeccc
Q psy11701        567 AKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPF  602 (745)
Q Consensus       567 ~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~  602 (745)
                      +.|.+|.|++.|.|+|.|+|..|.|++|..+...+.
T Consensus        72 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  107 (115)
T 1x5z_A           72 YRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTM  107 (115)
T ss_dssp             EEEECCCTTCEEEECEEEECSSCEEEECCCEEEECC
T ss_pred             EEECCCCCCCeEEEEEEEECCCcccCCCcCEEEecC
Confidence            999999999999999999999999999987765533

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.58  E-value=1.4e-15  Score=144.06  Aligned_cols=170  Identities=12%  Similarity=0.216  Sum_probs=112.3

Q ss_pred             cCeE-EecCceeEeeCCCeEEEEEEEeec-CC-C-eEEEEeCCEec-cCCCCCC-----ceeecCceEEEccCCCCCCEE
Q psy11701        125 APYF-TVEPEFINAAEEETVTFECKASGL-PE-P-EIHWVHNGKPI-SQAPPNP-----RRKVGPNRITIENLRKSDTGN  194 (745)
Q Consensus       125 ~p~~-~~~~~~~~v~~G~~~~l~C~~~~~-p~-~-~v~W~~~g~~~-~~~~~~~-----~~~~~~~~L~i~~v~~~d~G~  194 (745)
                      +|.+ ...|....+.+|++++|.|.+.|. |. + .++|+++|+.+ .......     ........|.|.++..+|+|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~   91 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER   91 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence            3443 345666677899999999999884 64 4 99999999877 3211000     000122469999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEE---eecCCeeeeC-CCceEEecCceEEEEEEEeec-C-CCeEEEeeCCEEccCceEE---
Q psy11701        195 YGCNATNSLGYVYKDVYVNV---LAHAPEITEA-PKDEYTVDGKTVVLTCRVFGA-P-KPEVNWIHNQKELTGGRYT---  265 (745)
Q Consensus       195 Y~C~~~~~~g~~~~~~~l~v---~~~~p~~~~~-~~~~~v~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~---  265 (745)
                      |+|.+.|..+.......+.+   ...+|.+... +....+ .+..++|.|.+.+. | .+.|.|+++|..+....+.   
T Consensus        92 Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  170 (231)
T 2w59_A           92 FTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTA  170 (231)
T ss_dssp             EEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECC
T ss_pred             EEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCc
Confidence            99999998764322333322   1135555433 322222 35579999999986 4 3689999999987544311   


Q ss_pred             --Ee--------ec-C------cEEEcccCCCCCEEEEEEEEeCCce
Q psy11701        266 --IL--------ET-G------DLKITDVAFADSGEYTCFARNKLGT  295 (745)
Q Consensus       266 --~~--------~~-~------~l~i~~~~~~d~G~Y~C~~~n~~g~  295 (745)
                        ..        .+ +      .|.|......|.|.|+|.|.|....
T Consensus       171 ~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          171 VLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             CEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             cccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence              11        22 3      3777777778899999999987643

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=1.6e-14  Score=120.20  Aligned_cols=104  Identities=23%  Similarity=0.390  Sum_probs=87.3

Q ss_pred             CCCCcceEEeCC--CCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcce
Q psy11701        489 GPPSEIISFVTP--EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS  566 (745)
Q Consensus       489 g~~S~~~~~~t~--~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (745)
                      |++|..+.++|.  .++|++|.++++...+.++|.|+|++|...+|.|.+|.|+|+..+...+..       + .....+
T Consensus         1 G~~S~~~~~~T~~~~~~P~~P~~l~~~~~~~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~-------~-~~~~~~   72 (116)
T 1x5g_A            1 GSSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQD-------V-DVSSHS   72 (116)
T ss_dssp             CCCCCCCCCSSCCCSSCCCCCSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTCCCCCC-------E-EECSSE
T ss_pred             CCCccCeEEEcCCCCCCCcCCCccEEEecCCCEEEEEEeCCCCCCCcccEEEEEEEECCCCccEE-------E-ecCCce
Confidence            467777888884  378999999999999999999999999888889999999999876554321       1 234689


Q ss_pred             eeecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        567 AKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       567 ~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      +.|.+|+|++.|.|+|.|+|..|.|++|..+.+.
T Consensus        73 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~  106 (116)
T 1x5g_A           73 YTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVR  106 (116)
T ss_dssp             EEECSCCTTCEEEEEEEEECSSCCCCBCCCCCEE
T ss_pred             EEEcCCCCCCEEEEEEEEEcCCCcCCCCCCEEEE
Confidence            9999999999999999999999999998776544

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=5.9e-15  Score=123.13  Aligned_cols=104  Identities=26%  Similarity=0.399  Sum_probs=86.1

Q ss_pred             CCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcce
Q psy11701        487 YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS  566 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (745)
                      |.+..+....++|.+++|++|.++++...+.++|.|+|++|... |.|.+|.|+|+..+...+....     +.....+.
T Consensus         1 Gss~~~~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~-g~i~~Y~v~~~~~~~~~~~~~~-----~~~~~~~~   74 (118)
T 2yrz_A            1 GSSGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCE-RPLQGYSVEYQLLNGGELHRLN-----IPNPAQTS   74 (118)
T ss_dssp             CCCCCCSCCTTSSSCSCCCCCCCCEECCCBTTEEEEECCCCCCS-SCEEEEEEEEEBSSSCCEEEEE-----ESCTTCCE
T ss_pred             CCCCCCCcceeecCCCCCCCCCceEEEeCCCCEEEEEeCCCCCC-CCccEEEEEEEECCCCceEEEE-----cCCCCcCE
Confidence            44556666778899999999999999999999999999999875 6999999999986654332211     22456789


Q ss_pred             eeecCCCCCccEEEEEEEEecCCCCCCcce
Q psy11701        567 AKLAGLEPSTKYRIHLAGYTKAGDGAESKY  596 (745)
Q Consensus       567 ~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~  596 (745)
                      ++|.+|.|++.|.|+|.|+|..|.|++|..
T Consensus        75 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  104 (118)
T 2yrz_A           75 VVVEDLLPNHSYVFRVRAQSQEGWGREREG  104 (118)
T ss_dssp             EEEESCCTTCEEEEEEEEEESSCEEEEEEE
T ss_pred             EEeCCCCCCCEEEEEEEEEcCCcCCCCcCC
Confidence            999999999999999999999999999873

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.57  E-value=1.7e-14  Score=120.78  Aligned_cols=108  Identities=14%  Similarity=0.188  Sum_probs=85.8

Q ss_pred             CCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcC-CcccCCcccccccccCCCcc
Q psy11701        487 YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVK-GTKVGPLLERLPYISDPTTT  565 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~  565 (745)
                      |.+..+......+..++|++|.++++...+.++|.|+|+++.+++++|++|.|+|+... ...|......   + ....+
T Consensus         1 G~~~~~~~~~~~~~~~~P~~P~~~~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~---~-~~~~~   76 (121)
T 1x4z_A            1 GSSGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSA---I-PPSRL   76 (121)
T ss_dssp             CCCCCCCCCCCSSSCCCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEEEE---E-CTTCC
T ss_pred             CCcccccceeccCcCCCCccCCCCEEEEccCCEEEEEEECCCCCCCcceEEEEEEEECCCCCceEEeecc---c-CCCcC
Confidence            34444555556677789999999999999999999999987777789999999999875 3333322110   1 44668


Q ss_pred             eeeecCCCCCccEEEEEEEEecCCCCCCcceee
Q psy11701        566 SAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLF  598 (745)
Q Consensus       566 ~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~  598 (745)
                      .++|.+|.|++.|.|+|.|.|..|.|++|....
T Consensus        77 ~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~  109 (121)
T 1x4z_A           77 SVEITGLEKGISYKFRVRALNMLGESEPSAPSR  109 (121)
T ss_dssp             EEEEESCCTTCEEEEEEEEEETTEECCCCCCCC
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCCcCCCcCCCC
Confidence            999999999999999999999999999987654

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.57  E-value=2e-14  Score=140.90  Aligned_cols=170  Identities=17%  Similarity=0.340  Sum_probs=114.6

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCC--Eec--------------cCCCCCCceee-----cCceEEE
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG--KPI--------------SQAPPNPRRKV-----GPNRITI  184 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g--~~~--------------~~~~~~~~~~~-----~~~~L~i  184 (745)
                      +.+...|....+.+|++++|.|.+.+.+.+.+.|+|++  ...              .......++..     .+..|.|
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV  104 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence            44566678888999999999999988788899999863  111              00011223322     1247999


Q ss_pred             ccCCCCCCEEEEEEEEeCCc------eEEEEEEEEEee-----cCCeeeeC-CCceEEecCceEEEEEEEeec-CC-CeE
Q psy11701        185 ENLRKSDTGNYGCNATNSLG------YVYKDVYVNVLA-----HAPEITEA-PKDEYTVDGKTVVLTCRVFGA-PK-PEV  250 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g------~~~~~~~l~v~~-----~~p~~~~~-~~~~~v~~g~~~~l~C~~~~~-p~-~~i  250 (745)
                      .+++.+|+|.|+|.+.+..+      .......|.|..     .+|.+... +....+.+|+.++|.|.+.+. |. +.+
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v  184 (279)
T 2wbj_D          105 TSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  184 (279)
T ss_dssp             SSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEE
T ss_pred             ccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEE
Confidence            99999999999999998421      111224566653     25555433 333344579999999999987 43 589


Q ss_pred             EEeeCCEEccCceEEE---------eecC------cEEEcccCCC-CCEEEEEEEEeCCce
Q psy11701        251 NWIHNQKELTGGRYTI---------LETG------DLKITDVAFA-DSGEYTCFARNKLGT  295 (745)
Q Consensus       251 ~W~~~~~~~~~~~~~~---------~~~~------~l~i~~~~~~-d~G~Y~C~~~n~~g~  295 (745)
                      .|++++..+.......         ..++      .|.|...... +.|.|+|.|.|....
T Consensus       185 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          185 SWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             EEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             EEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            9999998876443211         0222      3777777665 477899999997544

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.7e-14  Score=120.62  Aligned_cols=102  Identities=15%  Similarity=0.329  Sum_probs=84.5

Q ss_pred             eEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCC
Q psy11701        495 ISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP  574 (745)
Q Consensus       495 ~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p  574 (745)
                      ..+.+.+++|++|.++++...+.++|.|+|++|.+.++.|.+|.|+|+..+...+....     ........+.|.+|+|
T Consensus         9 ~~~~~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~-----~~~~~~~~~~i~~L~p   83 (119)
T 2ed7_A            9 PAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALN-----TTQPGSLQLTVGNLKP   83 (119)
T ss_dssp             SSCCCSSSSCCCCSCCEEEEECSSCEEEECCCCSCCSSCEEEEEEEEEESSCCCCEEEE-----CCCTTCCEEEECSCCS
T ss_pred             ccCCCCCCCCcCCcceEEEecCCCEEEEEEeCCCCCCCcEEEEEEEEEeCCCCcceeeE-----eecCCceEEEeCCCCC
Confidence            44567788999999999999999999999999988889999999999987654332111     1134578999999999


Q ss_pred             CccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        575 STKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       575 ~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      ++.|.|+|.|+|..|.|++|..+...+
T Consensus        84 ~t~Y~~~V~A~n~~G~g~~S~~~~~~T  110 (119)
T 2ed7_A           84 EAMYTFRVVAYNEWGPGESSQPIKVAT  110 (119)
T ss_dssp             SSEEEECCEEEESSCBCSCCCCEEEEC
T ss_pred             CCEEEEEEEEEcCCccCCCcCCEEEEe
Confidence            999999999999999999998765543

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.57  E-value=2.3e-14  Score=138.12  Aligned_cols=166  Identities=17%  Similarity=0.263  Sum_probs=111.3

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Eecc----CC----------CCCCceee------cCceEEEc
Q psy11701        130 VEPEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KPIS----QA----------PPNPRRKV------GPNRITIE  185 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~~~----~~----------~~~~~~~~------~~~~L~i~  185 (745)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.    ..          ....++..      ....|.|.
T Consensus        11 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   90 (261)
T 2xqy_G           11 QQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS   90 (261)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence            446677899999999999998866  5799999863  2110    00          01223322      23589999


Q ss_pred             cCCCCCCEEEEEEEEeCCceE---EEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-eEEEeeCCE
Q psy11701        186 NLRKSDTGNYGCNATNSLGYV---YKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNWIHNQK  257 (745)
Q Consensus       186 ~v~~~d~G~Y~C~~~~~~g~~---~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~~~~~  257 (745)
                      +++.+|+|.|.|.+.+..+..   .....|.|..   .+|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++.
T Consensus        91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~  170 (261)
T 2xqy_G           91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  170 (261)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             CCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence            999999999999999864311   1235677764   24555433323346789999999999885 665 899999886


Q ss_pred             EccC---ceE----EEeecCcEEEcccCCCCCEEEEEEEEeCCceE
Q psy11701        258 ELTG---GRY----TILETGDLKITDVAFADSGEYTCFARNKLGTA  296 (745)
Q Consensus       258 ~~~~---~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~  296 (745)
                      .+..   ...    .......|.|.....+| |.|+|.|.|.....
T Consensus       171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~  215 (261)
T 2xqy_G          171 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST  215 (261)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             cCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCc
Confidence            5421   111    01123468898888877 99999999976553

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.56  E-value=5.6e-13  Score=130.83  Aligned_cols=244  Identities=20%  Similarity=0.307  Sum_probs=138.7

Q ss_pred             EEecCceEEEEEEEeecCCCeEEEeeCCEEccCceEEEeecCcEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecc
Q psy11701        229 YTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHT  308 (745)
Q Consensus       229 ~v~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p  308 (745)
                      .+..|++++|.|.+... . .|.|.+++.....     ..+++|.|.++...|+|.|+|.+   .+.....+.+.|..++
T Consensus        17 ~~~~G~~v~l~C~~~~~-~-~i~W~~~~~~~~~-----~~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~v~~~~   86 (306)
T 3d85_D           17 PDAPGEMVVLTCDTPEE-D-GITWTLDQSSEVL-----GSGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLHKKE   86 (306)
T ss_dssp             SSCCCEEEEEECSSSCC-S-SCEEEETTCCCCC-----EESSEEEEEECSGGGCEEEEEEE---TTEEEEEEEEEEEEEE
T ss_pred             cCccCCcEEEECCCCCC-C-cCEEEECCccccC-----CCCCEEEEEecCcCCCceEEEee---CCcccceEEEEEEecc
Confidence            34579999999998732 2 7999999875322     24678999999999999999999   3555555556565321


Q ss_pred             ------eeecCCCcEEEecCCeEEEEEEEEecCCCCcEEEEeeCCee-ccC-------CCCCe-EEEc-----------C
Q psy11701        309 ------HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEP-IDF-------ESEPR-FVQS-----------N  362 (745)
Q Consensus       309 ------~~~~~p~~~~~~~g~~~~l~C~~~~~~~~~~~i~W~~~~~~-~~~-------~~~~~-~~~~-----------~  362 (745)
                            .+...+...    -+...|.|.+..... .+.+.|..+... +..       ..... ....           .
T Consensus        87 ~~~~~t~i~~~~~~p----p~~~~lsC~~~~~~~-~~~C~W~pg~~~~l~~~~~~~r~~~~~~~~~C~~~~~~~~~c~v~  161 (306)
T 3d85_D           87 DGIWSTDILKDQKEP----KNKTFLRCEAKNYSG-RFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGD  161 (306)
T ss_dssp             TTEECCCSSCCCC-------CCCCCEEEBSSSSS-EEEEEEEESCCSSEEEEEEEEECSSSCEEEEECCCEEEEEEEC--
T ss_pred             CCcceeeeecccCCC----CCCCcceEEcCCccc-CcEEEecCCCCCceeEEEEEEecCCCCcceECCCCCCCccceeec
Confidence                  111000000    011234444333221 134444433220 000       00000 0000           0


Q ss_pred             C----eEEE--EecC----CCCCCEEEEEEEEeCCceEEEEEEEEE--eccCCCCCCceeEEeecCceeEEEEEeCCCCC
Q psy11701        363 D----YSLT--VTKS----SELDSGQYTCRAQTELDFIEAQATLTV--QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQS  430 (745)
Q Consensus       363 ~----~~l~--i~~~----~~~~~g~y~c~a~n~~g~~~~~~~l~v--~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~  430 (745)
                      .    .++.  ....    .....+.++|.|.|..|.......+.+  .+.|.||.++.+........+.|+|+++..  
T Consensus       162 ~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~~--  239 (306)
T 3d85_D          162 NKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDT--  239 (306)
T ss_dssp             CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEEEEEC----CEEEEEECCTT--
T ss_pred             CccccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehhcEecCCCceEEEEEecCCCcEEEEEcCCCC--
Confidence            0    0110  1111    122467789999999997666554433  367899999998762233789999999642  


Q ss_pred             cce----eeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecCCCCCCCCcceE
Q psy11701        431 LRG----HFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIIS  496 (745)
Q Consensus       431 ~~~----~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~  496 (745)
                      .+.    -.+.|+|+|+..+...+  ....  .....++.|   .+++.|+|+|+|.|..|.|.+|....
T Consensus       240 ~~~p~~~~~L~Y~vryr~~~~~~~--~~~~--~~~~ts~~l---~~~~~Y~vqVRa~~~~~~G~WSeWS~  302 (306)
T 3d85_D          240 WSTPHSYFSLTFCVQVQGKSKREK--KDRV--FTDKTSATV---ICRKNASISVRAQDRYYSSSWSEWAS  302 (306)
T ss_dssp             SCSCTTTSCEEEEEEEECC--------CEE--EESSSEEEE---CCCSSCEEEEEEEESSSCCCCCCCEE
T ss_pred             CcCCCceeeEEEEEEEEECCCCcc--EEEe--eccccEEEE---eCCCeEEEEEEeccCCCCCCCCCCCC
Confidence            232    23689999987664322  2122  223345655   45999999999999999999988654

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.9e-14  Score=118.93  Aligned_cols=92  Identities=27%  Similarity=0.395  Sum_probs=75.2

Q ss_pred             EEeCCC-CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCC
Q psy11701        496 SFVTPE-GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP  574 (745)
Q Consensus       496 ~~~t~~-~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p  574 (745)
                      ...+.+ ++|++|.++++...+ ++|.|+|++|.+.+|.|.+|.|+|+....  +....     ......++++|.+|+|
T Consensus         9 ~~~t~e~~~P~~P~~l~~~~~~-~sv~l~W~~P~~~ng~i~gY~i~y~~~~~--~~~~~-----~~~~~~~~~~l~~L~p   80 (116)
T 2edb_A            9 ENDLDESQVPDQPSSLHVRPQT-NCIIMSWTPPLNPNIVVRGYIIGYGVGSP--YAETV-----RVDSKQRYYSIERLES   80 (116)
T ss_dssp             SSSCBCSSCCCCCSCEEEEECS-SCEEEEECCCSCTTBCCCEEEEEEEESST--TSEEE-----EEETTCCEEEECSCCS
T ss_pred             cccCCCCCCCCCCCCeEEEECC-CEEEEEEcCCCCCCCceeEEEEEEEeCCC--CeEEE-----EeCCCeeEEEeCCCCC
Confidence            344556 789999999999988 99999999998888999999999986321  11111     1145678999999999


Q ss_pred             CccEEEEEEEEecCCCCCCcc
Q psy11701        575 STKYRIHLAGYTKAGDGAESK  595 (745)
Q Consensus       575 ~t~Y~~~V~a~n~~G~g~~S~  595 (745)
                      ++.|.|+|.|+|.+|.|+++.
T Consensus        81 ~t~Y~~~V~A~n~~G~g~~~~  101 (116)
T 2edb_A           81 SSHYVISLKAFNNAGEGVPLY  101 (116)
T ss_dssp             SSBEEEEEEEEETTEECSCEE
T ss_pred             CCEEEEEEEEEeCCccCCCCc
Confidence            999999999999999999854

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.56  E-value=9e-15  Score=122.86  Aligned_cols=108  Identities=18%  Similarity=0.210  Sum_probs=84.9

Q ss_pred             CCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEc---CCcccCCcccccccccCCC
Q psy11701        487 YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSV---KGTKVGPLLERLPYISDPT  563 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~---~~~~~~~~~~~~~~~~~~~  563 (745)
                      |.+..+..+...+..++|++|.++++...+.++|.|+|.+|.+++++|++|.|+|+..   ....|......   .....
T Consensus         1 ~~~~~s~~~~~~~~~~~P~~P~~l~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~---~~~~~   77 (124)
T 1wis_A            1 GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQL---SNEPD   77 (124)
T ss_dssp             CCCCCSCCCCSCCCCCCCCCCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEE---ESCTT
T ss_pred             CCCCccccccccCCCCCCccCCCCEEEEecCCEEEEEEECCCCCCCcccEEEEEEEECCCCCCCCCeEeeeE---ccCCC
Confidence            3444455566667778999999999999999999999999988888999999999873   22233221110   01356


Q ss_pred             cceeeecCCCCCccEEEEEEEEecCCCCCCccee
Q psy11701        564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       564 ~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~  597 (745)
                      ...+++.+|+|++.|.|||.|.|..|.|++|...
T Consensus        78 ~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~~  111 (124)
T 1wis_A           78 ARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPS  111 (124)
T ss_dssp             CSEEEECSCCTTSEECCCCEEECSSCBCCCCCCC
T ss_pred             ceEEEeCCCCCCCEEEEEEEEEECCccCCCcCCc
Confidence            6899999999999999999999999999998754

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.56  E-value=2.5e-14  Score=136.81  Aligned_cols=169  Identities=17%  Similarity=0.272  Sum_probs=112.4

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeec--CCCeEEEEeCC--Ee---cc-----------CCCCCCceee------cCceE
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGL--PEPEIHWVHNG--KP---IS-----------QAPPNPRRKV------GPNRI  182 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~g--~~---~~-----------~~~~~~~~~~------~~~~L  182 (745)
                      .+...|....+.+|++++|.|.+.+.  +...+.|+|+.  ..   +.           ......++..      ....|
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            35556788889999999999999875  56799999842  21   10           0002233332      23579


Q ss_pred             EEccCCCCCCEEEEEEEEeCCc-----eE--EEEEEEEEeec------CCeeee-CCCceEEecCceEEEEEEEeec-CC
Q psy11701        183 TIENLRKSDTGNYGCNATNSLG-----YV--YKDVYVNVLAH------APEITE-APKDEYTVDGKTVVLTCRVFGA-PK  247 (745)
Q Consensus       183 ~i~~v~~~d~G~Y~C~~~~~~g-----~~--~~~~~l~v~~~------~p~~~~-~~~~~~v~~g~~~~l~C~~~~~-p~  247 (745)
                      .|.+++.+|+|.|.|.+.+...     ..  .....|.|...      +|.... .+....+.+|+.++|.|.+.+. |.
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~  162 (242)
T 1hxm_B           83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD  162 (242)
T ss_dssp             EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred             EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence            9999999999999999997631     11  12356777642      233222 2344455679999999999987 54


Q ss_pred             -CeEEEeeCCE-EccCce---EEE-----eecCcEEEcccCCCCCEEEEEEEEeCCceEE
Q psy11701        248 -PEVNWIHNQK-ELTGGR---YTI-----LETGDLKITDVAFADSGEYTCFARNKLGTAQ  297 (745)
Q Consensus       248 -~~i~W~~~~~-~~~~~~---~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~  297 (745)
                       +.+.|++++. .+....   ...     .....|.|..... | |.|+|.|.|..+...
T Consensus       163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~  220 (242)
T 1hxm_B          163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNG  220 (242)
T ss_dssp             CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGG
T ss_pred             CeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCC
Confidence             6899999986 453221   011     0113588887764 4 999999999887643

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.56  E-value=3.4e-16  Score=146.60  Aligned_cols=171  Identities=14%  Similarity=0.201  Sum_probs=112.9

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCC---CeeEEEECCEecCCCC-Ce---Eec---cCCcEEEEccCCCCCCEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPL---PQTIWSKDGVPINPSD-RI---SQG---NYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~---~~v~W~~~~~~i~~~~-~~---~~~---~~~~~L~i~~~~~~d~G~  101 (745)
                      +|..++..|....+.+|++++|.|.+.|.+.   +.|.|  ++.++.... ..   ...   .....|.|.+++.+|.|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~   80 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT   80 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence            4677777788888999999999999988754   68999  444443210 00   000   012368898999999999


Q ss_pred             EEEEEEeCCeee-EEEEEE-EEEEecCeEEecC-ceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCEeccCCCC--CCc
Q psy11701        102 YTCEVSNGVGEA-KSYSID-LSVLAAPYFTVEP-EFINAAEEETVTFECKASGL-PE-PEIHWVHNGKPISQAPP--NPR  174 (745)
Q Consensus       102 Y~C~~~~~~g~~-~~~~~~-l~V~~~p~~~~~~-~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~~~~~--~~~  174 (745)
                      |+|.+.+..+.. ....+. +.+..+|.+.+.+ ....+.+|+.++|.|.+.|. |. +.|+|+|||..+.....  ...
T Consensus        81 Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~  160 (214)
T 1ow0_A           81 FTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWAS  160 (214)
T ss_dssp             EEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCC
T ss_pred             EEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCC
Confidence            999999875532 222222 1335677765543 33346789999999999984 54 49999999998864311  111


Q ss_pred             eee---cCce------EEEccCCCCCCEEEEEEEEeCCc
Q psy11701        175 RKV---GPNR------ITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       175 ~~~---~~~~------L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      ...   .+++      |.|.....+|.|.|+|.|.|...
T Consensus       161 ~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          161 RQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             EECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             cccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence            222   3443      33444333558999999998753

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.56  E-value=1.8e-14  Score=117.16  Aligned_cols=96  Identities=17%  Similarity=0.273  Sum_probs=78.6

Q ss_pred             eCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCcc
Q psy11701        498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK  577 (745)
Q Consensus       498 ~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~  577 (745)
                      +|...+|++|.++++...+.++|.|+|++|.++|++|.+|.|+|+..... +   ..    ......+++.|.+|.|++.
T Consensus         2 tt~~~~P~~P~~~~~~~~s~~sv~l~W~~p~~~g~~i~~Y~v~~~~~~~~-~---~~----~~~~~~~~~~v~~L~p~t~   73 (106)
T 1x4x_A            2 SSGSSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGS-M---QI----CYCGPGLSYEIKGLSPATT   73 (106)
T ss_dssp             CSSCCSCCCCCCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTS-C---CE----EEEESCSEEEEESCCSSCE
T ss_pred             CCCCCCcCCCCCCEEEEcCCCEEEEEEcCCCCCCCcceEEEEEEEcCCCc-e---EE----EEeCCcceEEEcCCCCCCE
Confidence            35678899999999999999999999999988556999999999865422 1   11    1133557899999999999


Q ss_pred             EEEEEEEEecCCCCCCcceeeecc
Q psy11701        578 YRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       578 Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      |.|+|.|.|..|.|++|..+...+
T Consensus        74 Y~frV~A~n~~G~g~~S~~v~~~T   97 (106)
T 1x4x_A           74 YYCRVQALSVVGAGPFSEVVACVT   97 (106)
T ss_dssp             EEEEEEEECSSCCCCBCCCEEEEC
T ss_pred             EEEEEEEEcCCcCCCCcCCEEEEC
Confidence            999999999999999988765543

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.55  E-value=1.3e-14  Score=119.52  Aligned_cols=100  Identities=29%  Similarity=0.445  Sum_probs=83.4

Q ss_pred             EEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCC
Q psy11701        496 SFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS  575 (745)
Q Consensus       496 ~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~  575 (745)
                      .++|.+++|++|.++++...+.++|.|+|++|.+.+|.|.+|.|+|+..+..... +.     ........+.|.+|.|+
T Consensus         3 ~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~-~~-----~~~~~~~~~~i~~L~p~   76 (111)
T 1x5l_A            3 SGSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQS-YS-----TLKAVTTRATVSGLKPG   76 (111)
T ss_dssp             CCCCSCCCCCCCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCSS-CE-----EEEESSSEEEECSCCTT
T ss_pred             eEEcCCCCCCCCceEEEEEcCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCcee-EE-----EecCCCCEEEEcCCCCC
Confidence            4678889999999999988899999999999988889999999999987532221 11     11445689999999999


Q ss_pred             ccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        576 TKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       576 t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      +.|.|+|.|+|..|.|++|..+.+.+
T Consensus        77 t~Y~~~V~A~n~~G~g~~S~~~~~~T  102 (111)
T 1x5l_A           77 TRYVFQVRARTSAGCGRFSQAMEVET  102 (111)
T ss_dssp             CEEEECEEEEETTEECCCCCCEEEEC
T ss_pred             CEEEEEEEEEeCCcCCCCcccEEEEc
Confidence            99999999999999999998775543

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=4.7e-14  Score=116.75  Aligned_cols=99  Identities=24%  Similarity=0.276  Sum_probs=84.2

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccC--CcEEEEccCCCCCCEEEEEEEEe
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY--GKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      ..|..+...+.+..+.+|++++|.|.+.|.|.+.+.|+|++..|....++.+...  ...|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A            5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence            3566677889999999999999999999999999999999999987777765432  45899999999999999999999


Q ss_pred             CCeeeEEEEEEEEEEecCeEEe
Q psy11701        109 GVGEAKSYSIDLSVLAAPYFTV  130 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~~p~~~~  130 (745)
                      ..|... ..+.|.|...|....
T Consensus        85 ~~g~~~-~~~~l~V~~~p~~P~  105 (114)
T 2cqv_A           85 KLGSRQ-AQVNLTVVDKPDPPA  105 (114)
T ss_dssp             SSCEEE-CCEEEEEECSCSCCC
T ss_pred             CCCcEE-EEEEEEEECCCCCCC
Confidence            988766 678899988775433

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1e-14  Score=122.96  Aligned_cols=117  Identities=19%  Similarity=0.188  Sum_probs=88.7

Q ss_pred             EEEEEecCCCCCCcceeeecccCCC-----CCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCc
Q psy11701        581 HLAGYTKAGDGAESKYLFYVPFKNP-----DNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDV  655 (745)
Q Consensus       581 ~V~a~n~~G~g~~S~~~~~~~~~~~-----~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~  655 (745)
                      +|.|+|..|.|++|..+...+....     .++.+....++++.|+|+++.....+|.|.+|.|+|+.......      
T Consensus         3 ~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~------   76 (124)
T 2ed9_A            3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGE------   76 (124)
T ss_dssp             SCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCC------
T ss_pred             eEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcc------
Confidence            5789999999999876644433221     12222334568899999988876688999999999986522110      


Q ss_pred             cccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceE
Q psy11701        656 LDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIIS  735 (745)
Q Consensus       656 ~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~  735 (745)
                                                            ........+++.|.+|+|++.|.|+|+|.|.+|.|++|+++.
T Consensus        77 --------------------------------------~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~  118 (124)
T 2ed9_A           77 --------------------------------------METLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYT  118 (124)
T ss_dssp             --------------------------------------EEEECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEE
T ss_pred             --------------------------------------eEEecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEE
Confidence                                                  001246788899999999999999999999999999999999


Q ss_pred             EeCCCC
Q psy11701        736 FVTPEG  741 (745)
Q Consensus       736 ~~t~~~  741 (745)
                      ++|++.
T Consensus       119 ~~T~ed  124 (124)
T 2ed9_A          119 AETPEN  124 (124)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.54  E-value=8.2e-14  Score=112.08  Aligned_cols=92  Identities=25%  Similarity=0.273  Sum_probs=78.0

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe---ccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ---GNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      .|+.+...+.+..+.+|++++|.|.+.|.|.+.+.|+|++..+....++..   .....+|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            355667788999999999999999999999999999999999987766553   23345899999999999999999999


Q ss_pred             CCeeeEEEEEEEEEEe
Q psy11701        109 GVGEAKSYSIDLSVLA  124 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~  124 (745)
                      ..|... ..+.|.|..
T Consensus        84 ~~g~~~-~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETS-SHAFLLVQA   98 (99)
T ss_dssp             TTEEEE-EEEEEEEEC
T ss_pred             CCCcEE-EEEEEEEec
Confidence            998877 567777753

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.54  E-value=1.5e-14  Score=117.36  Aligned_cols=97  Identities=21%  Similarity=0.306  Sum_probs=77.1

Q ss_pred             CCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCc-eeeEEEEEEEcCCcccCCc-ccccccccCCCcceeeecCCCCCcc
Q psy11701        500 PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPL-LERLPYISDPTTTSAKLAGLEPSTK  577 (745)
Q Consensus       500 ~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~-i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~  577 (745)
                      .+++|++|.++.+...+.+ +.|+|++|...||. |.+|.|+|+..+...|... ....  . ....+.++|.+|+|++.
T Consensus         3 ~~~~P~~P~~~~~~~~~~~-v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~--~-~~~~~~~~i~~L~p~t~   78 (105)
T 2haz_A            3 HMDTPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK--E-ASMEGIVTIVGLKPETT   78 (105)
T ss_dssp             CCCCCCCCEEEEEEECSSC-EEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHH--H-HHHHSEEEECSCCTTCE
T ss_pred             CCCCCcCCCCCEEEEcCCc-EEEEEcCCcccCCccccEEEEEEEECCCCCCccceEEcc--c-cCCccEEEECCCCCCCE
Confidence            4678888999999888888 99999999877776 9999999998775533211 1100  1 22468899999999999


Q ss_pred             EEEEEEEEecCCCCCCcceeeec
Q psy11701        578 YRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       578 Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      |.|+|.|+|.+|.|++|+...+.
T Consensus        79 Y~~rV~A~n~~G~g~~S~~~~~~  101 (105)
T 2haz_A           79 YAVRLAALNGKGLGEISAASEFK  101 (105)
T ss_dssp             EEEEEEEEETTEECCCCCCEEEE
T ss_pred             EEEEEEEEcCCccCCCcCCEeeE
Confidence            99999999999999999876544

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.54  E-value=4.3e-14  Score=131.11  Aligned_cols=164  Identities=13%  Similarity=0.190  Sum_probs=105.8

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--Ee---c-------CCCCCeEecc-----CCcEEEEccCCCCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VP---I-------NPSDRISQGN-----YGKSLIIKHVEFSDQ   99 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~---i-------~~~~~~~~~~-----~~~~L~i~~~~~~d~   99 (745)
                      ...|..+.+.+|++++|.|.+.+.+ +.+.|+|..  ..   |       ....|+.+..     ...+|.|.+++.+|+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~   83 (207)
T 1ypz_E            5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS   83 (207)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC
T ss_pred             EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC
Confidence            4456778899999999999997654 489999842  21   1       0235665542     234899999999999


Q ss_pred             EEEEEEEEeCCe---------e-eEEEEEEEEEEecCeEEecCceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCEecc
Q psy11701        100 GSYTCEVSNGVG---------E-AKSYSIDLSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PE-PEIHWVHNGKPIS  167 (745)
Q Consensus       100 G~Y~C~~~~~~g---------~-~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~  167 (745)
                      |.|.|.+.+..+         . .......|.|...+.....| ...+..+ .+.|.|.+.+. |. +.++|+++ ..+.
T Consensus        84 G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P-~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~  160 (207)
T 1ypz_E           84 GTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKP-SVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKIV  160 (207)
T ss_dssp             EEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCC-EEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEEE
T ss_pred             EEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCC-eEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-Cccc
Confidence            999999987532         1 11123567776432211222 2222222 27999999874 54 69999999 6665


Q ss_pred             CCCCCCceeecCceEEEccCCC-CCCEEEEEEEEeCCce
Q psy11701        168 QAPPNPRRKVGPNRITIENLRK-SDTGNYGCNATNSLGY  205 (745)
Q Consensus       168 ~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~~~~g~  205 (745)
                      ... .......++.+.+..... +|.|.|+|.|.|..+.
T Consensus       161 ~~~-~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~  198 (207)
T 1ypz_E          161 EFD-PAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSET  198 (207)
T ss_dssp             ECC-CEEEECTTSSEEEEECEEESSTTTCEEEEEETTEE
T ss_pred             CCc-cceEEcCCCcEEEEEeecccCCCcEEEEEEECCcc
Confidence            321 111113345666655544 6789999999998764

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.54  E-value=1.9e-13  Score=121.10  Aligned_cols=157  Identities=17%  Similarity=0.189  Sum_probs=109.1

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCe-eEEEE--CCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQ-TIWSK--DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~-v~W~~--~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      .+.|++..|.+|+++.|+|.+.. +.+. +.|.-  +...+...     +.....|.|.+++. | |.|.|.+. ..|..
T Consensus         3 ~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~-----~~~~~~l~l~~vs~-~-g~y~C~~~-c~~~~   73 (185)
T 1iam_A            3 SVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLP-----GNNRKVYELSNVQE-D-SQPMCYSN-CPDGQ   73 (185)
T ss_dssp             EEESSEEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSS-----SSSEEEEEEEEECS-C-BCCEEEEE-CSSCE
T ss_pred             EEECCCcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEecc-----CCceeEEEEEecCc-C-CEEEEEEE-CCCCc
Confidence            35677788999999999999964 4554 77752  11111000     12224699999984 4 99999984 44556


Q ss_pred             EEEEEEEEEEecCeE-EecCceeEeeCCCeEEEEEEEee-cCCC--eEEEEeCCEeccCCCCCCceeecCceEEEccCCC
Q psy11701        114 KSYSIDLSVLAAPYF-TVEPEFINAAEEETVTFECKASG-LPEP--EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRK  189 (745)
Q Consensus       114 ~~~~~~l~V~~~p~~-~~~~~~~~v~~G~~~~l~C~~~~-~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~  189 (745)
                      ....+.|.|+.+|.- .+.+....+.+|+.++|.|.+.| .|.+  .|+|+|+++.+........  ..+.+|++.....
T Consensus        74 ~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~~--~~~~tl~~~~~re  151 (185)
T 1iam_A           74 STAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGE--PAEVTTTVLVRRD  151 (185)
T ss_dssp             EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTT--TEEEEEEEECCSS
T ss_pred             eEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCCc--cccEEEEEeceec
Confidence            678899999988764 44555566899999999999988 5554  5899999998864321110  1123677766555


Q ss_pred             CCCEEEEEEEEeCCc
Q psy11701        190 SDTGNYGCNATNSLG  204 (745)
Q Consensus       190 ~d~G~Y~C~~~~~~g  204 (745)
                      +|...|+|+|.+..+
T Consensus       152 D~g~~~sC~A~~~l~  166 (185)
T 1iam_A          152 HHGAQFSCRTELDLR  166 (185)
T ss_dssp             CSSCEEEEEEEEECG
T ss_pred             cCCCeEEEEEEecCc
Confidence            666699999998765

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.53  E-value=3.9e-14  Score=132.75  Aligned_cols=166  Identities=20%  Similarity=0.336  Sum_probs=106.3

Q ss_pred             CceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Eecc-------------CCCCCCceeec------CceEEEccCC
Q psy11701        132 PEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KPIS-------------QAPPNPRRKVG------PNRITIENLR  188 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~~~-------------~~~~~~~~~~~------~~~L~i~~v~  188 (745)
                      |....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.             ......++...      +..|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            5566789999999999998754  4789999852  2110             00112233221      2489999999


Q ss_pred             CCCCEEEEEEEEeCCce---EEEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-eEEEeeCCEEcc
Q psy11701        189 KSDTGNYGCNATNSLGY---VYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-EVNWIHNQKELT  260 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~g~---~~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~  260 (745)
                      .+|+|.|.|.+.+..+.   ....+.|.|..   .+|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++..+.
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~  166 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSD  166 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCS
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCc
Confidence            99999999999986421   11235666753   24555443323345689999999999987 777 999999876432


Q ss_pred             Cc-eEEEeecCcE----EEcccCCCCCEEEEEEEEeCCceEEE
Q psy11701        261 GG-RYTILETGDL----KITDVAFADSGEYTCFARNKLGTAQG  298 (745)
Q Consensus       261 ~~-~~~~~~~~~l----~i~~~~~~d~G~Y~C~~~n~~g~~~~  298 (745)
                      .. .......+.+    .+.....+| |.|+|.|.|..+....
T Consensus       167 ~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~  208 (215)
T 1c5d_H          167 VHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV  208 (215)
T ss_dssp             CCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred             eEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence            11 0001111221    122333345 9999999998877543

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=7.2e-14  Score=115.72  Aligned_cols=100  Identities=18%  Similarity=0.307  Sum_probs=79.8

Q ss_pred             CCCCCC-CCCCceeEEEc--CCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCC
Q psy11701        499 TPEGVP-GTVQSLEAIPL--GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS  575 (745)
Q Consensus       499 t~~~~P-~~p~~~~~~~~--~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~  575 (745)
                      |.++.| ++|.++++...  +.++|.|+|++|.+.+|.|.+|.|+|+.........+....  + ....+.++|.+|.|+
T Consensus         3 T~~~~P~~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~--~-~~~~~~~~i~~L~p~   79 (114)
T 2ede_A            3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMET--I-SGDRLTHQIMDLNLD   79 (114)
T ss_dssp             CCCCCCCSCCEEEEEEECSSCSSCEEEEEECCSSCSSCCSEEEEEEESCSSSCTTTSEEEE--E-ETTCCEEEECSCCSS
T ss_pred             CCCCCCCCCCcceEEEEccCCCCEEEEEECCCCCCCCceeEEEEEEEeCCCCCccceEEEE--E-CCCceEEEEcCCCCC
Confidence            344444 88999999988  78999999999988889999999999875543333222111  1 456789999999999


Q ss_pred             ccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        576 TKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       576 t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      +.|.|+|.|.|..|.|++|..+.+.+
T Consensus        80 t~Y~~~V~A~n~~G~g~~S~~~~~~T  105 (114)
T 2ede_A           80 TMYYFRIQARNSKGVGPLSDPILFRT  105 (114)
T ss_dssp             CEEEEEEEEECSSCBCCCCCCEEEEC
T ss_pred             CEEEEEEEEEeCCcCcCCcccEEEEe
Confidence            99999999999999999998776554

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.53  E-value=1.8e-14  Score=138.24  Aligned_cols=164  Identities=18%  Similarity=0.268  Sum_probs=95.9

Q ss_pred             CceeEeeCCCeEEEEEEEeecC--CCeEEEEeCC--Eecc------C--------CCCCCceee------cCceEEEccC
Q psy11701        132 PEFINAAEEETVTFECKASGLP--EPEIHWVHNG--KPIS------Q--------APPNPRRKV------GPNRITIENL  187 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~g--~~~~------~--------~~~~~~~~~------~~~~L~i~~v  187 (745)
                      |....+.+|++++|.|.+.+.+  .+.+.|+|..  ..+.      .        .....++..      ....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL   86 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence            4456789999999999998765  5789999853  1110      0        001223322      1348999999


Q ss_pred             CCCCCEEEEEEEEeCCc----------e---EEEEEEEEEee---cCCeeeeCCCceEEecCceEEEEEEEeec-CCC-e
Q psy11701        188 RKSDTGNYGCNATNSLG----------Y---VYKDVYVNVLA---HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKP-E  249 (745)
Q Consensus       188 ~~~d~G~Y~C~~~~~~g----------~---~~~~~~l~v~~---~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~~-~  249 (745)
                      +.+|+|.|.|.+.+..|          .   ......|.|..   .+|.+...+....+..|+.++|.|.+.+. |.+ .
T Consensus        87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~  166 (257)
T 3bn9_D           87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  166 (257)
T ss_dssp             CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCE
T ss_pred             ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcE
Confidence            99999999999998754          1   11235677764   34655443333346789999999999986 766 8


Q ss_pred             EEEeeCCEEccCc--eEEEeec------CcEEEcccCCCCCEEEEEEEEeCCceE
Q psy11701        250 VNWIHNQKELTGG--RYTILET------GDLKITDVAFADSGEYTCFARNKLGTA  296 (745)
Q Consensus       250 i~W~~~~~~~~~~--~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~~  296 (745)
                      +.|++++..+...  ......+      ..|.|.++...| |.|+|.|.|.....
T Consensus       167 v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~  220 (257)
T 3bn9_D          167 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  220 (257)
T ss_dssp             EEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTE
T ss_pred             EEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence            9999988653211  0011122      246777777667 99999999975543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.53  E-value=2.8e-14  Score=137.56  Aligned_cols=165  Identities=16%  Similarity=0.284  Sum_probs=107.8

Q ss_pred             EecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEe---ccC-CC--------CCC-ceeecC-ce--EEEccCCCC
Q psy11701        129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKP---ISQ-AP--------PNP-RRKVGP-NR--ITIENLRKS  190 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~---~~~-~~--------~~~-~~~~~~-~~--L~i~~v~~~  190 (745)
                      ...|....+.+|++++|.|.+.+.+.+.+.|+|.  +..   +.. ..        ... ++.... ..  |.|.+++.+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~   84 (253)
T 3to4_D            5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS   84 (253)
T ss_dssp             EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS
T ss_pred             EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh
Confidence            3456778899999999999998888889999982  111   100 00        001 222211 11  999999999


Q ss_pred             CCEEEEEEEEeCCc------eEEEEEEEEEee-----cCCeeeeC-CCceEEecCceEEEEEEEee-cCCC-eEEEeeCC
Q psy11701        191 DTGNYGCNATNSLG------YVYKDVYVNVLA-----HAPEITEA-PKDEYTVDGKTVVLTCRVFG-APKP-EVNWIHNQ  256 (745)
Q Consensus       191 d~G~Y~C~~~~~~g------~~~~~~~l~v~~-----~~p~~~~~-~~~~~v~~g~~~~l~C~~~~-~p~~-~i~W~~~~  256 (745)
                      |+|.|+|.+.+..+      .......+.|..     .+|.+... +....+..|+.++|.|.+.+ .|.+ .+.|++++
T Consensus        85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g  164 (253)
T 3to4_D           85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  164 (253)
T ss_dssp             SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             hCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECC
Confidence            99999999986643      111224566653     34544332 23333445789999999998 4655 89999999


Q ss_pred             EEccCceEEEe---------ec------CcEEEcccCCCC-CEEEEEEEEeCC
Q psy11701        257 KELTGGRYTIL---------ET------GDLKITDVAFAD-SGEYTCFARNKL  293 (745)
Q Consensus       257 ~~~~~~~~~~~---------~~------~~l~i~~~~~~d-~G~Y~C~~~n~~  293 (745)
                      ..+........         .+      ..|.|.....+| .|.|+|.|.|..
T Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          165 KEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             EECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            88754322110         12      247777776667 779999999864

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.53  E-value=3.6e-14  Score=112.45  Aligned_cols=88  Identities=19%  Similarity=0.295  Sum_probs=73.7

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECC--EecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDG--VPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~--~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      +.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++  ..+....++........|.|.+++.+|+|.|+|.|.|..|
T Consensus         3 P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   82 (93)
T 1wit_A            3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELG   82 (93)
T ss_dssp             CEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTE
T ss_pred             CeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCCC
Confidence            33456678899999999999999999999999999999  8887654455444556899999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy11701        112 EAKSYSIDLSV  122 (745)
Q Consensus       112 ~~~~~~~~l~V  122 (745)
                      ... ..+.|.|
T Consensus        83 ~~~-~~~~l~V   92 (93)
T 1wit_A           83 EDE-AIFEVIV   92 (93)
T ss_dssp             EEE-EEEEEEE
T ss_pred             eEE-EEEEEEE
Confidence            765 6677766

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.53  E-value=6.2e-14  Score=132.33  Aligned_cols=170  Identities=15%  Similarity=0.163  Sum_probs=109.6

Q ss_pred             EeeccceeEecCCcEEEEEEEeec--CCCeeEEEECC--Ee---c--------------CCCCCeEecc----CCcEEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKDG--VP---I--------------NPSDRISQGN----YGKSLII   91 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~--~~---i--------------~~~~~~~~~~----~~~~L~i   91 (745)
                      +..|..+.+.+|++|+|.|.+.+.  +...+.|+|..  ..   +              .-.+|+.+..    ...+|+|
T Consensus         4 v~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (226)
T 3mlr_H            4 LVESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQW   83 (226)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEE
T ss_pred             EEcCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEE
Confidence            445567889999999999999763  34589999832  11   1              0124554422    2236999


Q ss_pred             ccCCCCCCEEEEEEEEeCCe-------e-eEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEee-cC-CCeE
Q psy11701         92 KHVEFSDQGSYTCEVSNGVG-------E-AKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASG-LP-EPEI  157 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~g-------~-~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p-~~~v  157 (745)
                      .+++.+|+|.|.|.+.+..+       . .......|.|.    .+|.+...+....+.+|+.+.|.|.+.+ .| .+.+
T Consensus        84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v  163 (226)
T 3mlr_H           84 TTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  163 (226)
T ss_dssp             SSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEE
T ss_pred             CCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEE
Confidence            99999999999999976421       0 11122355663    3555554444445678999999999987 44 4589


Q ss_pred             EEEeCCEeccCCCC-CCcee------ecCceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        158 HWVHNGKPISQAPP-NPRRK------VGPNRITIENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       158 ~W~~~g~~~~~~~~-~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      .|  ++..+..... .....      ...+.|.|.+...+| |.|+|.|.|..+.....
T Consensus       164 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~  219 (226)
T 3mlr_H          164 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  219 (226)
T ss_dssp             EE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEE
T ss_pred             EE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeE
Confidence            99  4433321100 00111      112478999999889 99999999987764443

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.52  E-value=5.1e-14  Score=115.08  Aligned_cols=93  Identities=22%  Similarity=0.375  Sum_probs=77.1

Q ss_pred             eCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCcc
Q psy11701        498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK  577 (745)
Q Consensus       498 ~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~  577 (745)
                      .|.+++|++|. +.+...+.++|.|+|++|.+.+|.|.+|.|+|+..+...+....     + ....+++.|.+|.|++.
T Consensus         2 ~T~~~~P~~p~-~~v~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~-----~-~~~~~~~~i~~L~p~t~   74 (107)
T 2dn7_A            2 SSGSSGPGRPT-MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTID-----F-GKDDQHFTVTGLHKGTT   74 (107)
T ss_dssp             TTCCCCCCCCE-EEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTCSSCEEEE-----E-ETTCCEEEEECCCTTCE
T ss_pred             CCCCCCCCCCc-EeEEecCCCEEEEEECCCCCCCCceeEEEEEEEECCCCCCEEEE-----e-CCCccEEEeCCCCCCCE
Confidence            36678898887 77778899999999999988889999999999987654332211     2 45668999999999999


Q ss_pred             EEEEEEEEecCCCCCCccee
Q psy11701        578 YRIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       578 Y~~~V~a~n~~G~g~~S~~~  597 (745)
                      |.|+|.|+|..|.|++|...
T Consensus        75 Y~~~V~A~n~~G~g~~s~~~   94 (107)
T 2dn7_A           75 YIFRLAAKNRAGLGEEFEKE   94 (107)
T ss_dssp             EEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEcCCcccCCeeeE
Confidence            99999999999999998743

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.52  E-value=1.4e-13  Score=132.87  Aligned_cols=176  Identities=15%  Similarity=0.221  Sum_probs=110.9

Q ss_pred             eEeeccceeEecCCcEEEEEEEeec--CCCeeEEEEC--CEe---c--------------CCCCCeEecc----CCcEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSKD--GVP---I--------------NPSDRISQGN----YGKSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~--~~~---i--------------~~~~~~~~~~----~~~~L~   90 (745)
                      .+..+....+.+|++|+|.|.+.+.  ....+.|+|.  +..   +              .-.+|+.+..    ...+|+
T Consensus        26 ~v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  105 (256)
T 3sob_H           26 QLVESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQ  105 (256)
T ss_dssp             EEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             EEEecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEE
Confidence            3445566789999999999999753  2458999973  211   1              0124555422    223699


Q ss_pred             EccCCCCCCEEEEEEEEeCC----------eeeEEEEEEEEEE----ecCeEEecCceeEeeCCCeEEEEEEEee-cC-C
Q psy11701         91 IKHVEFSDQGSYTCEVSNGV----------GEAKSYSIDLSVL----AAPYFTVEPEFINAAEEETVTFECKASG-LP-E  154 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~----------g~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p-~  154 (745)
                      |.+++.+|+|.|.|.+.+..          .........|.|.    .+|.+...+....+.+|+.++|.|.+.+ .| .
T Consensus       106 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~  185 (256)
T 3sob_H          106 MNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  185 (256)
T ss_dssp             ECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSC
T ss_pred             ECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCC
Confidence            99999999999999998642          1112233456664    3555554444445678999999999987 45 3


Q ss_pred             CeEEEEeCCEeccCCCCC-Cce------eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEE
Q psy11701        155 PEIHWVHNGKPISQAPPN-PRR------KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       155 ~~v~W~~~g~~~~~~~~~-~~~------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v  214 (745)
                      ..+.|  ++..+...... ...      ....+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus       186 ~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          186 VTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             CEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             eEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence            58999  55444321100 011      1112478899999999 9999999998876655555444

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=4.9e-14  Score=113.58  Aligned_cols=94  Identities=27%  Similarity=0.429  Sum_probs=78.6

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC-CCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP-SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      ..|+.+...+.+..+.+|++++|.|.+.|.|.+.+.|+|++..+.. ..++.... +++|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~n~   84 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE-QGTLQIKNLRISDTGTYTCVATSS   84 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECT-TCCEEEESCCTTTCCEEEEEEECS
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcC-CCEEEEccCCcccCEEEEEEEEcC
Confidence            4566677889999999999999999999999999999999998873 34555433 447999999999999999999999


Q ss_pred             CeeeEEEEEEEEEEecC
Q psy11701        110 VGEAKSYSIDLSVLAAP  126 (745)
Q Consensus       110 ~g~~~~~~~~l~V~~~p  126 (745)
                      .|... ..+.|.|..+|
T Consensus        85 ~g~~~-~~~~l~V~~~~  100 (100)
T 2edj_A           85 SGETS-WSAVLDVTESG  100 (100)
T ss_dssp             SCCCB-CCEEEEEESCC
T ss_pred             CCCEE-EEEEEEEecCC
Confidence            88765 66888887654

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=6.2e-14  Score=114.22  Aligned_cols=94  Identities=26%  Similarity=0.478  Sum_probs=79.1

Q ss_pred             CCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEE
Q psy11701        500 PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR  579 (745)
Q Consensus       500 ~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~  579 (745)
                      .+++|++|.++++...+.++|.|+|++|...+|.|.+|+|+|+..+...+...        ....+++.|.+|.|++.|.
T Consensus         4 ~~~~P~~P~~l~~~~~~~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~--------~~~~~~~~i~~L~p~t~Y~   75 (106)
T 2ed8_A            4 GSSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNI--------EVDGLSYKLEGLKKFTEYS   75 (106)
T ss_dssp             CCCCCCCCEEEEEECSSTTEEEEEEECCSSCSSCCCEEEEEEEETTTCCEEEE--------EECSSCEEEESCCTTCEEE
T ss_pred             CCCCCcCCceeEEEecCCCEEEEEECCCCCCCCCeeEEEEEEEECCCCceEEE--------eCCccEEEECCCCCCCEEE
Confidence            45789999999999999999999999998888899999999998765433211        2235899999999999999


Q ss_pred             EEEEEEecCCCCCCcceeeecc
Q psy11701        580 IHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       580 ~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      |+|.|+|..|.|++|..+.+.+
T Consensus        76 ~~V~A~n~~G~g~~S~~~~~~T   97 (106)
T 2ed8_A           76 LRFLAYNRYGPGVSTDDITVVT   97 (106)
T ss_dssp             EEEEEECSSCEEEECCCEEEEC
T ss_pred             EEEEEEeCCccCCCcCCEEEEc
Confidence            9999999999999988765553

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.52  E-value=9.4e-13  Score=136.96  Aligned_cols=221  Identities=13%  Similarity=0.134  Sum_probs=135.6

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEc-----------cCceeEEEe--ccc
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN-----------KGESTTTEV--DKF  470 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~-----------~~~~~~~~i--~~L  470 (745)
                      +|.++.+.. .....+++.|+++...   .....|.+.|+..... .........           ......+.+  ..+
T Consensus         5 ~~~~l~C~~-~~~~~~~C~W~~~~~~---~~~~~~~l~y~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~~~~C~~~~~~~   79 (419)
T 2gys_A            5 PLQTLRCYN-DYTSHITCRWADTQDA---QRLVNVTLIRRVNEDL-LEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQSF   79 (419)
T ss_dssp             HHHHCEEEE-CSSSEEEEEEEEEHHH---HTTCCEEEEEEEETTE-EEECCEEECSCCTTSCCCSSSEEEEEEEEECSCC
T ss_pred             cCCCceEEe-CCCEEEEEEeeCCcCC---CCcccEEEEeecCCcC-CccceeccccCcccccCCCCCccccEeEeCCcce
Confidence            467788877 7778999999985421   1123588877653210 000000000           001124444  444


Q ss_pred             ccCcceeEEEEEecCCCCCCCCcceEEe-CCCCCCCCCCceeEEEcCCceEEEEeeCCCCCC------CceeeEEEEEEE
Q psy11701        471 VPASKNFARVLAFNGAYNGPPSEIISFV-TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPN------GVLMGYKIKYQS  543 (745)
Q Consensus       471 ~~~~~Y~~~V~a~n~~G~g~~S~~~~~~-t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~------g~i~~Y~v~~~~  543 (745)
                      .-...|.|+|.|.|..|.     ...+. .....|.||.+|.+.... +.+.|+|++|....      +....|.|+|+.
T Consensus        80 ~~~~~~~~~v~~~~~~~~-----~~~~~~~~~v~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~  153 (419)
T 2gys_A           80 VVTDVDYFSFQPDRPLGT-----RLTVTLTQHVQPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKR  153 (419)
T ss_dssp             CTTCEEEEEEEESSCCCE-----EEEEEGGGSBCCCCCEEEEEEEET-TEEEEEEECCC-----CCSCGGGEEEEEEEEE
T ss_pred             eeecccEEEEeCCccccc-----cceEcHHHcccCCCCCceEEEecC-CeEEEEECCCccccccchhccCceEEEEEEcc
Confidence            556689999999776653     12232 233578889999988866 69999999987521      357899999998


Q ss_pred             cCCcccCCcccccccccCCCcceeeec--CCCCCccEEEEEEEEecC---CCCCCcceeeecccCCCCCCCC-------C
Q psy11701        544 VKGTKVGPLLERLPYISDPTTTSAKLA--GLEPSTKYRIHLAGYTKA---GDGAESKYLFYVPFKNPDNVEG-------R  611 (745)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~p~t~Y~~~V~a~n~~---G~g~~S~~~~~~~~~~~~~~~~-------~  611 (745)
                      .+ ..|.....    + ......+.+.  +|.|++.|+|+|+|.+..   +.|.+|+++..+...++...+.       .
T Consensus       154 ~~-~~w~~~~~----~-~~~~~~~~~~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~~~~p~~l~c~  227 (419)
T 2gys_A          154 LQ-DSWEDAAI----L-LSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECF  227 (419)
T ss_dssp             TT-SCSTTCEE----E-EESSSEEEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCCTTSCEEEEEE
T ss_pred             CC-CChhheee----e-cccceEEEechhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeeccccccCCCceEEEE
Confidence            76 44433321    1 1123455555  999999999999999964   4578777665444334332221       1


Q ss_pred             CCCCcceeEEEeecCccccCCCcceEEEEEecc
Q psy11701        612 GSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRH  644 (745)
Q Consensus       612 ~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~  644 (745)
                      ......|.+.|++.......   ..|+|+|+..
T Consensus       228 ~~~~~~l~c~W~~~~~~~~~---~~y~l~y~~~  257 (419)
T 2gys_A          228 FDGAAVLSCSWEVRKEVASS---VSFGLFYKPS  257 (419)
T ss_dssp             ECSSSEEEEEEEEEHHHHTT---CCEEEEEECC
T ss_pred             ECCceEEEeEEECCCCCCCc---eeEEEEEEec
Confidence            23346788999976322222   6799999865

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.9e-14  Score=114.05  Aligned_cols=92  Identities=20%  Similarity=0.335  Sum_probs=78.3

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEe
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      .+|..|...+.+..+.+|++++|.|.+  .|.+.+.|+|||.+|....++.+...+  ..|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A            5 SSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             SCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             CCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence            346667788999999999999999999  788899999999999988887765544  4899999999999999999988


Q ss_pred             CCeeeEEEEEEEEEEecCe
Q psy11701        109 GVGEAKSYSIDLSVLAAPY  127 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~~p~  127 (745)
                      .   ..+.++.|.|..+|.
T Consensus        83 ~---~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           83 Y---NVTLPAKVHVISGPS   98 (100)
T ss_dssp             S---CCCEEEEEEEECCSC
T ss_pred             C---CeeEEEEEEEeCCCC
Confidence            6   233668899988774

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.51  E-value=7.1e-14  Score=112.11  Aligned_cols=93  Identities=15%  Similarity=0.287  Sum_probs=72.4

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCC--CCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEE
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQ--PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHL  582 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V  582 (745)
                      .+|.++.+...+.++|.|+|++|..  .+|.|.||.|.|+..+......+....  + .+...++.|.+|+|++.|.|+|
T Consensus         6 ~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~--v-~~~~~~~~l~~L~p~t~Y~v~V   82 (102)
T 3n1f_C            6 TGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDV--V-EGSKQWHMIGHLQPETSYDIKM   82 (102)
T ss_dssp             SCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEE--E-ETTCSEEEECSCCTTCEEEEEE
T ss_pred             CCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEEE--E-cCCceEEECCCCCCCCEEEEEE
Confidence            5788999999999999999999874  789999999999987643212221111  2 3456789999999999999999


Q ss_pred             EEEecCCCCCCcceeeec
Q psy11701        583 AGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       583 ~a~n~~G~g~~S~~~~~~  600 (745)
                      .|+|.+|.|++|..+...
T Consensus        83 ~A~n~~G~G~~S~~~~~~  100 (102)
T 3n1f_C           83 QCFNEGGESEFSNVMICE  100 (102)
T ss_dssp             EEEETTEECCCCCCEEEE
T ss_pred             EEECCCcCCCCCCCEEee
Confidence            999999999999876543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.51  E-value=2.1e-13  Score=110.58  Aligned_cols=92  Identities=20%  Similarity=0.254  Sum_probs=79.2

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccC--CcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNY--GKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      |+.+...+.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+....++.+...  ..+|.|.+++.+|+|.|+|.|.|..
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   87 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYK   87 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCC
Confidence            45566788899999999999999999999999999999999988777665443  3479999999999999999999999


Q ss_pred             eeeEEEEEEEEEEec
Q psy11701        111 GEAKSYSIDLSVLAA  125 (745)
Q Consensus       111 g~~~~~~~~l~V~~~  125 (745)
                      |... ..+.|.|...
T Consensus        88 G~~~-~~~~l~V~~~  101 (103)
T 3qp3_A           88 GEAS-DYATLDVTGG  101 (103)
T ss_dssp             EEEE-EEEEEEEECC
T ss_pred             CcEE-EEEEEEEECC
Confidence            8876 6688888654

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.51  E-value=1e-13  Score=113.32  Aligned_cols=94  Identities=16%  Similarity=0.225  Sum_probs=77.7

Q ss_pred             CCCCCCCCCceeEEE--cCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCcc
Q psy11701        500 PEGVPGTVQSLEAIP--LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK  577 (745)
Q Consensus       500 ~~~~P~~p~~~~~~~--~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~  577 (745)
                      .++.|++|.++++..  .+.++|.|+|++|.+.+|.|.+|.|+|+..+...|...        ....+.++|.+|+|++.
T Consensus         4 ~~~~P~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~--------~~~~~~~~l~~L~p~t~   75 (108)
T 2dm4_A            4 GSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQ--------RAASNFTEIKNLLVNTL   75 (108)
T ss_dssp             CCCCTTSCEEEEEECCTTCSSCEEEEEECCSCCSSCEEEEEEEEEETTCSCCEEE--------EESSSEEEECSCCSSCE
T ss_pred             CCCCCcCCcCeEEEEeccCCCEEEEEEcCCCCCCCcEEEEEEEEEECCCCCeEEe--------cCCccEEEeCCCCCCCE
Confidence            346788999998766  58899999999999888999999999998765433211        22457999999999999


Q ss_pred             EEEEEEEEecCCCCCCcceeeecc
Q psy11701        578 YRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       578 Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      |.|+|.|+|..|.|++|..+...+
T Consensus        76 Y~~~V~A~n~~G~g~~S~~~~~~T   99 (108)
T 2dm4_A           76 YTVRVAAVTSRGIGNWSDSKSITT   99 (108)
T ss_dssp             EEEEEEEEESSCEEEECCCEEEEC
T ss_pred             EEEEEEEECCCceeCCCCCEEEEC
Confidence            999999999999999998776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	745
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	8e-21
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-19
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-10
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-18
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-16
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-12
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	5e-18
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	8e-17
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-12
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-17
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-14
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-10
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-07
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-16
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-16
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-12
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-08
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-16
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-14
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-12
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-15
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	8e-14
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-10
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-08
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-15
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	6e-14
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-12
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-06
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-15
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-14
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-12
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-07
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-15
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	4e-09
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-14
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-10
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-10
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	5e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	8e-14
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-13
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-10
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	3e-13
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-09
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-13
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-08
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	8e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	0.002
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	6e-13
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-12
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-08
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	3e-06
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	2e-12
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	2e-04
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	0.004
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	3e-12
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	0.003
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-12
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-10
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-11
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	6e-10
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-11
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-05
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	2e-11
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	6e-06
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-11
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	8e-09
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	7e-08
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	0.002
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-11
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-10
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-11
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-10
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	5e-11
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	7e-10
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	5e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-11
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-08
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	9e-07
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	8e-11
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	9e-09
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-08
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-05
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	9e-11
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	2e-06
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	4e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-10
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-09
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-07
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	8e-04
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-10
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-10
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-10
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-09
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-04
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	5e-10
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	4e-08
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	6e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	7e-10
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-06
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	8e-10
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	4e-06
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	0.004
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	3e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-09
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	7e-08
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	3e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	0.004
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	2e-09
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	9e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-09
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	5e-09
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-05
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	3e-09
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	3e-07
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	2e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	5e-09
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	5e-08
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	7e-09
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	3e-08
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	3e-07
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	9e-09
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	1e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	3e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	7e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-08
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	8e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	5e-05
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	2e-08
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	1e-05
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	3e-05
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	5e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	3e-08
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	6e-06
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-08
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	4e-07
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	5e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	8e-05
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	3e-08
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	7e-04
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	0.003
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	4e-08
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	5e-07
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	5e-06
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.002
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	4e-08
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	6e-07
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	0.001
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	4e-08
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	3e-05
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	5e-05
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	2e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	6e-08
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	3e-05
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	8e-08
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	1e-06
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	1e-04
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	9e-08
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	1e-07
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	5e-06
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	1e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	9e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	3e-05
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	3e-07
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	3e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	3e-07
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	4e-07
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	6e-07
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	5e-06
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	3e-07
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	5e-07
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	9e-07
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	7e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	7e-04
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	8e-07
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	4e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	8e-07
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	6e-06
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	1e-06
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	1e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.002
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	3e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	5e-04
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	8e-04
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	3e-06
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	1e-05
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	0.002
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	3e-06
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	6e-06
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	6e-04
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	0.002
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	7e-06
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	0.002
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	9e-06
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	0.002
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	9e-06
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	4e-04
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	1e-05
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	0.004
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	1e-05
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	0.003
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	1e-05
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	0.001
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	1e-05
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	3e-05
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	3e-04
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	3e-05
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	5e-04
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	3e-05
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	0.002
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	0.002
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	5e-05
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	0.002
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	7e-05
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	8e-05
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	0.002
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	1e-04
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	1e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	1e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.004
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.004
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	1e-04
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.002
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.002
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	1e-04
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	0.004
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-04
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	2e-04
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	2e-04
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	3e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	4e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	5e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.004
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	4e-04
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	4e-04
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	4e-04
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	0.001
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	4e-04
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	0.001
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	5e-04
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	6e-04
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	8e-04
d1cqka_	101	b.1.1.2 (A:) Immunoglobulin heavy chain gamma cons	8e-04
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	0.001
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	0.002
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	0.001
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	0.001
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	0.001
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.001
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	0.001
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	0.001
d1kcvh2	101	b.1.1.2 (H:117-217) Immunoglobulin heavy chain gam	0.001
d1fltx_	95	b.1.1.4 (X:) Second domain of the Flt-1 receptor {	0.002
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	0.002
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	0.002
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.002
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	0.002
d1mjuh2	102	b.1.1.2 (H:114-230) Immunoglobulin heavy chain gam	0.002
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	0.003
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	0.003
d1hxma2	86	b.1.1.2 (A:121-206) T-cell antigen receptor {Human	0.003
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	0.004

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 85.2 bits (210), Expect = 8e-21
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 218 APEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITD 276
           AP+  + P+    V  G+ V + C+V G P P V W HN K L+GGR T+ ++  L I  
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS-GLVIKG 60

Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTV 304
           V   D G Y C A N+ G       + V
Sbjct: 61  VKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 81.7 bits (201), Expect = 1e-19
 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 124 AAPYFTVEPE-FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
           +AP +  +PE  I   + + VT  CK +GLP P + W HN KP        R  V  + +
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKP----LSGGRATVTDSGL 56

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
            I+ ++  D G YGC ATN  G  Y +  V V
Sbjct: 57  VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 309 HITDQPED-YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
               +PE    V+ GQ  T  C     P    ++VW   ++P+            D  L 
Sbjct: 4   KYEQKPEKVIVVKQGQDVTIPCKVTGLP--APNVVWSHNAKPLSGGR----ATVTDSGLV 57

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
           +      D G Y CRA  E      +  + V
Sbjct: 58  IKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 55.9 bits (134), Expect = 2e-10
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 32  APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLII 91
           APK +    K  V  + + V + C   G P P  +WS +  P++        +    L+I
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG---LVI 58

Query: 92  KHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
           K V+  D+G Y C  +N  G+       + V
Sbjct: 59  KGVKNGDKGYYGCRATNEHGDKYF-ETLVQV 88

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (192), Expect = 3e-18
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD----LKI 274
           P+I + P+D+    G++V L  +V G       W+  +K++    +  +E  +    L I
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                   G YT    NKLG+ Q   +LTV +
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 92

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 6e-16
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 3/100 (3%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN-RITI 184
           P     PE       E+V    K +G       W+   K I ++            ++TI
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA--HAPEIT 222
              R+   G Y     N LG     V + V+     P  T
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 100

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 1e-14
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND-YSLT 367
            I   PED +V AG+S              ++  W++  + I      +   S +   LT
Sbjct: 2   QIIQFPEDQKVRAGESVELFGKVTGTQ--PITCTWMKFRKQIQESEHMKVENSENGSKLT 59

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPS 406
           +  + +   G YT   + +L   +AQ  LTV    + P+
Sbjct: 60  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 98

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 3e-12
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGS 101
                + VELF    GT      W K    I  S+   +     G  L I        G 
Sbjct: 11  KVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGC 70

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
           YT  V N +G  ++  ++L+V+  P
Sbjct: 71  YTLLVENKLGSRQA-QVNLTVVDKP 94

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 5e-18
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 125 APYFT----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPN 180
           APY+T    +E          TV F C A G P P + W+ NGK   Q       KV   
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 181 RITI--ENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
             ++  E++  SD GNY C   N  G +    +++V+
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 74.1 bits (181), Expect = 8e-17
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 218 APEITEAPKDE---YTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELT-----GGRYTILE 268
           AP  T   K E   + V    TV   C   G P P + W+ N KE       GG     +
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
              L +  V  +D G YTC   N+ G+   +  L V
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 6e-13
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND--YSLTVTK 370
           +   + V A  +  FRC A  +P    ++ WL+  +    E      +  +  +SL +  
Sbjct: 11  EKRLHAVPAANTVKFRCPAGGNP--MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMES 68

Query: 371 SSELDSGQYTCRAQTELDFIEAQATLTV 398
               D G YTC  + E   I     L V
Sbjct: 69  VVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 6e-12
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 32  AP---KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS---QGNY 85
           AP     + + ++         V+  C  GG P+P   W K+G       RI      N 
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 86  GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
             SLI++ V  SD+G+YTC V N  G     +  L V+
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINH-TYHLDVV 97

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 75.3 bits (184), Expect = 2e-17
 Identities = 26/87 (29%), Positives = 40/87 (45%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVA 278
           P+  +   D     G  +  +C   G P+P V W+ + + L       +  G+L+ + + 
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLV 61

Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVK 305
             DSG Y C A NK GT   S  LTV+
Sbjct: 62  LEDSGMYQCVAENKHGTVYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.0 bits (165), Expect = 1e-14
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           P +        A     + + C ASG P P + W+ +G+P+       R +V    +   
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL---ASQNRIEVSGGELRFS 58

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
            L   D+G Y C A N  G VY    + V A
Sbjct: 59  KLVLEDSGMYQCVAENKHGTVYASAELTVQA 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
              D   D E + G    + C A   P   +  +           +    ++ +   L  
Sbjct: 3   DWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR-----DGQPLASQNRIEVSGGELRF 57

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           +K    DSG Y C A+ +   + A A LTVQ
Sbjct: 58  SKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYT 103
            A     +   C+  G P P   W +DG P+   +RI        L    +   D G Y 
Sbjct: 12  EADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG--ELRFSKLVLEDSGMYQ 69

Query: 104 CEVSNGVGEAKSYSIDLSVLA 124
           C   N  G   + S +L+V A
Sbjct: 70  CVAENKHGTVYA-SAELTVQA 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.8 bits (180), Expect = 1e-16
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-RYTILETGD---LKI 274
           P     P      +G++    CRV  +  P V W  + +EL    +Y     G+   L I
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
             V   D GEYT  A+N  GT +    L V  H
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH 94

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.5 bits (174), Expect = 7e-16
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-ITI 184
           P F V+P      E ++  F C+      P + W  + + + Q+    +R  G +  +TI
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAP 219
             ++  D G Y   A NS G   + V++NV  H+ 
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.9 bits (144), Expect = 7e-12
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
               +P   EV  GQSA F C  ++     ++            +   R+   NDY LT+
Sbjct: 3   RFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY-NGNDYGLTI 61

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLE 403
            +    D G+YT RA+      E    L V    E
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (118), Expect = 3e-08
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK--SLIIKHVEFSDQGS 101
                +    +C    +  P   W KD   +  S +  +   G    L I  V+  D+G 
Sbjct: 12  EVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGE 71

Query: 102 YTCEVSNGVGEAKSYSIDLSVLAAP 126
           YT    N  G  +   + L+V    
Sbjct: 72  YTVRAKNSYGTKEE-IVFLNVTRHS 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 2e-16
 Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKI--- 274
           AP+I E  + +    G       RV G P PE  W  N  ++           +  +   
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 275 --TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
              DV   DS      A N  G       L V+ 
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 2e-14
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 2/94 (2%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR- 181
           + AP      +     +     F  +  G P+PE  W  NG  I ++          N  
Sbjct: 2   MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 61

Query: 182 -ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
            + I ++   D+ +    A N  G      ++ V
Sbjct: 62  ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 8e-12
 Identities = 18/94 (19%), Positives = 28/94 (29%)

Query: 306 EHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
           E   I ++ +   V  G  A FR   V  P  +                   + + N   
Sbjct: 3   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           L +   +  DS     +A        + A L VQ
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 8e-07
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEFSDQG 100
              +           G P P+  W K+GV I  SDR       +    L+I+ V   D  
Sbjct: 15  TVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSA 74

Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
           S   +  N  GE  S    L V
Sbjct: 75  SIMVKAINIAGETSS-HAFLLV 95

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 71.0 bits (173), Expect = 1e-15
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 217 HAPEIT-EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKIT 275
           +AP I  + P D Y + G+ V L C  FG P P++ W       T     +     L I 
Sbjct: 3   YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT--SKWLSSEPLLHIQ 60

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTV 304
           +V F D G Y C A N  G     G + +
Sbjct: 61  NVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.2 bits (158), Expect = 8e-14
 Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 125 APYFTVE-PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
           AP    + P    A   + VT EC A G P P+I W              +       + 
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL-----DGSQTSKWLSSEPLLH 58

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
           I+N+   D G Y C A N  G       + + A
Sbjct: 59  IQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 7/90 (7%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
               P D     GQ  T  C A  +P  ++              S+     S++  L + 
Sbjct: 8   KAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK-------LDGSQTSKWLSSEPLLHIQ 60

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
                D G Y C A+        Q  + + 
Sbjct: 61  NVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 30  RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSL 89
           ++AP  +        AL  + V L C   G P+PQ  W K           S+      L
Sbjct: 2   QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP----LL 57

Query: 90  IIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLA 124
            I++V+F D+G+Y CE  N  G   +Y   + + A
Sbjct: 58  HIQNVDFEDEGTYECEAENIKGRD-TYQGRIIIHA 91

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 71.1 bits (173), Expect = 1e-15
 Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG-----RYTILETGDL 272
            P  T+   D   V+G      C+V G P PEV W  +   +         Y       L
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            I++V   D  +YTC A N LG A  +  L V+ 
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 66.1 bits (160), Expect = 6e-14
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP--PNPRRKVGPNRI 182
            PYFT     +   E     F+CK  G P+PE+ W  +  P+ ++        + G   +
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           TI  +   D   Y C A NSLG       + V
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 61.1 bits (147), Expect = 4e-12
 Identities = 21/92 (22%), Positives = 35/92 (38%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
           + T    D EV  G +A F C     P  ++               +  + +  + SLT+
Sbjct: 10  YFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTI 69

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
           ++    D  +YTC+A   L      A L V+ 
Sbjct: 70  SEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 43.0 bits (100), Expect = 8e-06
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQG 100
             +        C   G P P+ +W KD  P+  S             SL I  V   D  
Sbjct: 19  EVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA 78

Query: 101 SYTCEVSNGVGEAKSYSIDLSV 122
            YTC+  N +GEA   + +L V
Sbjct: 79  KYTCKAVNSLGEATC-TAELLV 99

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 2e-15
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKIT----D 276
           I   P+     +G++   +C   G P P V W+   + L+      + T   K T     
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           V  +D G Y+    N  G  +   +LT+++
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTIQK 91

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 4e-14
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIEN 186
              +P  +   E E+  F C   G P P + W+  G+ +S +  +        +   I +
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           ++ SD GNY     NS G    +  + +
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 2e-12
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
           I  +P    V  G+SA F C+   +P   ++ +  +G                  +  ++
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
                D G Y+   +      EA+ TLT+Q
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 5e-07
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 36  QYVTRKKEV-ALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGN--YGKSLIIK 92
           + +T+ + +     +     C   G P+P   W + G  ++ S R       Y  +  I 
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 93  HVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
            V+ SD+G+Y+  V N  G+ ++    L++
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEA-EFTLTI 89

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.9 bits (170), Expect = 3e-15
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 126 PYFTVEPEFIN--AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-- 181
           P        +N  A   ++VT  C A G PEP + W  +G+PI     +  + +  +   
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 182 -ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
            +TI N+ K+D   Y C A N  G     +++ V A
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.6 bits (151), Expect = 1e-12
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 219 PEITEAPKD-EYTVD-GKTVVLTCRVFGAPKPEVNWIHN------QKELTGGRYTILETG 270
           P +         T + G++V L C   G P+P ++W  +      ++E         ++ 
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
           +L I +V   D  EY C A NK G    S  L V
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS-LTVTKS 371
              +     GQS T  C+A   P   +S          + E + + + S+D S LT+   
Sbjct: 11  SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNV 70

Query: 372 SELDSGQYTCRAQTELDFIEAQATLTVQV 400
            + D  +Y C A+ +    +A   L V  
Sbjct: 71  DKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 4e-09
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINP----SDRISQGNYGKSLIIKHVEFSDQGSYTCEV 106
           V L C   G P P   W+KDG PI       ++    +    L I++V+ +D+  Y C  
Sbjct: 23  VTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 82

Query: 107 SNGVGEAKSYSIDLSVLA 124
            N  GE  + SI L V A
Sbjct: 83  ENKAGEQDA-SIHLKVFA 99

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.9 bits (162), Expect = 2e-14
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
             F   P      E E     C       P I W H G+ +          +  N + I 
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 186 NLRKSDTGNYGCNATNSLG--YVYKDVYVNV 214
            ++K+D G Y C           +KD+ V V
Sbjct: 62  GIKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE---LTGGRYTILETGDLKIT 275
                AP  +   +G+  V+ C V  +  P + W H  ++       R+ +L    L+I 
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTV 304
            +   D G Y C  R           + V
Sbjct: 62  GIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
             + P   E + G+ A   C+ VS      +I+W      +  + + RF+  ++  L + 
Sbjct: 4   FKNAPTPQEFKEGEDAVIVCDVVSSL--PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
              + D G Y C  +           + V V
Sbjct: 62  GIKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 5e-06
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 9/95 (9%)

Query: 30  RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ-GNYGKS 88
           ++AP  Q            +   + C    +  P  IW   G  +     +         
Sbjct: 5   KNAPTPQEFKE-------GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 57

Query: 89  LIIKHVEFSDQGSYTCEVSNGV-GEAKSYSIDLSV 122
           L I+ ++ +D+G+Y CE      GE     I + V
Sbjct: 58  LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 8e-14
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 18/106 (16%)

Query: 217 HAPEITE-APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL---------------- 259
           H P +    P +  TV G  V   C+V+   +P + WI + ++                 
Sbjct: 3   HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62

Query: 260 -TGGRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
             G   T  E   L I +V F D+GEYTC A N +G +  S  LTV
Sbjct: 63  AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 3e-13
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 15/105 (14%)

Query: 126 PYFTVE-PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV------- 177
           P      P   +      V F CK     +P I W+ + +                    
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 178 -------GPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
                      + I N+   D G Y C A NS+G  +   ++ VL
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 4e-10
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 16/103 (15%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP------------- 356
               P +     G    F C   SD   +  I W++  E    +  P             
Sbjct: 8   QAGLPANASTVVGGDVEFVCKVYSDA--QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAG 65

Query: 357 -RFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
                     L +   +  D+G+YTC A   +      A LTV
Sbjct: 66  VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 4e-10
 Identities = 25/110 (22%), Positives = 35/110 (31%), Gaps = 16/110 (14%)

Query: 29  NRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPIN------------- 75
           +RH P  Q         +    VE  C       P   W K                   
Sbjct: 1   SRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV 60

Query: 76  --PSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
              +   +     + L I++V F D G YTC   N +G +   S  L+VL
Sbjct: 61  LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFH-SAWLTVL 109

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 3e-13
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG-----SIRE 454
           +P+ AP N   + V+++  A V W+PV  +S+RGH +GY++  W  +           ++
Sbjct: 13  LPMVAPGNVR-VNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71

Query: 455 LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
           ++  +G  T   +    P S     V   NG   GP S    F TPEG  
Sbjct: 72  ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 4e-09
 Identities = 25/142 (17%), Positives = 40/142 (28%), Gaps = 35/142 (24%)

Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
           +P   P NV           + W  +P          YRI++ +  +    N+  +    
Sbjct: 13  LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHI---- 68

Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 719
                                           ++++  +G  T   +    P S     V
Sbjct: 69  -------------------------------EKKILTFQGSKTHGMLPGLEPFSHYTLNV 97

Query: 720 LAFNGAYNGPPSEIISFVTPEG 741
              NG   GP S    F TPEG
Sbjct: 98  RVVNGKGEGPASPDRVFNTPEG 119

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 4e-07
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 492 SEIISFVTPEGVPGT-VQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGT- 547
           S   S  + E +P     ++    + S+   + W  V  +   G L GY+I Y   + + 
Sbjct: 2   SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61

Query: 548 -KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
            +    +E+       + T   L GLEP + Y +++      G+G  S
Sbjct: 62  KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPAS 109

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 5e-13
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEV--------NWIHNQKELTGGRYTILETG 270
           P +      E+  +G+T +L C+    P            +        +  R+ +  + 
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 271 D---LKITDVAFAD-SGEYTCFARNKLGTAQGSGSLTVK 305
               L I ++      G+Y C   +  G+ Q   +L V+
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 9/98 (9%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEI--------HWVHNGKPISQAPPNPRRKV 177
           P         +  E ET    CK+  +P                     S++        
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 178 GPNRITIENLRKSD-TGNYGCNATNSLGYVYKDVYVNV 214
           G + + IENL      G Y CN T+S G     + + V
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 8e-07
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPS----LKLSIVWLRGSEPIDFESEPRFVQSNDY 364
            +        +  G++A   C + S P         I        ++      FV S+  
Sbjct: 4   RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 63

Query: 365 SLTVTKSS---ELDSGQYTCRAQTELDFIEAQATLTV 398
              +   +   E D GQY C   +     +A  TL V
Sbjct: 64  RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 15/95 (15%), Positives = 23/95 (24%), Gaps = 11/95 (11%)

Query: 38  VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPIN-------PSDRI---SQGNYGK 87
             +  E     +   L C     P                        R    S     +
Sbjct: 7   AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSE 66

Query: 88  SLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
             I      +D G Y C  ++  G  ++  I L V
Sbjct: 67  LHIENLNMEADPGQYRCNGTSSKGSDQA-IITLRV 100

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.4 bits (153), Expect = 6e-13
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 125 APYFTVEPE---FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
            P F  +P    F   + EE VT  C+A   P     W  NG  +   P +  R V  + 
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 182 ITIENLRKSDTGNYGCNATNSLGYVY 207
           +    ++  D G+Y C ATN+ G V 
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVV 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 216 AHAPEITEAPKDEYTVDG---KTVVLTCRVFGAPKPEVNWIHNQKEL---TGGRYTILET 269
           ++ P   E P      +G   + V LTCR    P     W  N  EL      RY ++  
Sbjct: 2   SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61

Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             +    V   D+G Y C A N  GT   S   +++
Sbjct: 62  DLVISNPVKAKDAGSYQCVATNARGTVV-SREASLR 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 48  NKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQGNYGKSLIIKHVEFSDQGSYTCEV 106
            +KV L C     P     W  +G  +    D   +   G  +I   V+  D GSY C  
Sbjct: 22  EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA 81

Query: 107 SNGVGEAKSYSIDL 120
           +N  G   S    L
Sbjct: 82  TNARGTVVSREASL 95

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 309 HITDQPEDYEVEAG---QSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS 365
              +QP       G   +  T  C A ++P    +  W      +    + R+       
Sbjct: 6   VFEEQPAHTLFPEGSAEEKVTLTCRARANP--PATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 366 LTVTKSSELDSGQYTCRAQTEL 387
           +        D+G Y C A    
Sbjct: 64  VISNPVKAKDAGSYQCVATNAR 85

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 488 NGPPS-EIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKG 546
           +G PS   I   T + VPG    +    + +++  L W  P  PNG+++ Y+I ++    
Sbjct: 4   DGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTT 63

Query: 547 TKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
           T     +E    +  P+       GL+P + Y   +   T+ G G  +
Sbjct: 64  TANTATVE----VLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAA 107

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 5/110 (4%)

Query: 394 ATLTVQVPLEAPSNFTLIQV--IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
             +  +   + P     I    +      + W P  P +  G    Y++          +
Sbjct: 10  PPILERTLDDVPGPPMGILFPEVRTTSVRLIWQP--PAAPNGIILAYQITHRLNTTTANT 67

Query: 452 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
               ++       T      P S    R+ A      G  +E +   T +
Sbjct: 68  ATVEVLAPSARQYT-ATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK 116

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 23/160 (14%), Positives = 38/160 (23%), Gaps = 50/160 (31%)

Query: 587 KAGDGAES------KYLFYVPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIF 640
           + GDG+ S      + L  VP   P  +        ++ + W   P    N     Y+I 
Sbjct: 1   RIGDGSPSHPPILERTLDDVPGP-PMGILFPEVRTTSVRLIW--QPPAAPNGIILAYQIT 57

Query: 641 WRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGE 700
            R + T       +VL     +           Y                          
Sbjct: 58  HRLNTTTANTATVEVLAPSARQYTATGLKPESVYLF------------------------ 93

Query: 701 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
                            R+ A      G  +E +   T +
Sbjct: 94  -----------------RITAQTRKGWGEAAEALVVTTEK 116

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 495 ISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLE 554
               T E VPG V  L    +  ++  + W +P + NG+L GY+I ++    T       
Sbjct: 2   QLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTN-----T 56

Query: 555 RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
           R+ +     T   ++ GL   T Y I +A  T  G G  S 
Sbjct: 57  RVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSA 97

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 19/105 (18%), Positives = 27/105 (25%), Gaps = 9/105 (8%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           VP     + +    I      VSW    P    G   GY++     +    + R      
Sbjct: 10  VP-GPVGHLS-FSEILDTSLKVSWQE--PGEKNGILTGYRISWE--EYNRTNTRVTHYLP 63

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
             +    V      +     V A      G  S         GVP
Sbjct: 64  NVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAS---TISSGVP 105

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 8e-12
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 11/92 (11%)

Query: 221 ITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD------LKI 274
           +T+  +D     G+ V L C V       V W  N +E+  G  +            L I
Sbjct: 3   VTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                AD+ EY+        +A+    L+V  
Sbjct: 62  EGATKADAAEYSVMTTGGQSSAK----LSVDL 89

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND---YS 365
            +T Q ED     G+     C  VS+      + W +  E I    + R+    +   + 
Sbjct: 2   MVTKQLEDTTAYCGERVELECE-VSEDDAN--VKWFKNGEEIIPGPKSRYRIRVEGKKHI 58

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
           L +  +++ D+ +Y+          ++ A L+V 
Sbjct: 59  LIIEGATKADAAEYSVMTTGG----QSSAKLSVD 88

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR---KVGPNRITI 184
            T + E   A   E V  EC+ S   +  + W  NG+ I   P +  R   +   + + I
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 185 ENLRKSDTGNYGCNATNSLG 204
           E   K+D   Y    T    
Sbjct: 62  EGATKADAAEYSVMTTGGQS 81

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 38  VTRKKE--VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGNYGKSLII 91
           VT++ E   A   ++VEL C           W K+G  I P      RI        LII
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 92  KHVEFSDQGSYTCEVSNGVGEAK 114
           +    +D   Y+   + G   AK
Sbjct: 62  EGATKADAAEYSVMTTGGQSSAK 84

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 219 PEIT-EAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKELTGGRYTILETGDLKITD 276
             +T E  + +    G  V   C     +P   + W          R      G L I +
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD-FNGILTIRN 60

Query: 277 VAFADSGEYTCFARNKLGTAQGSGSLTVK 305
           V  +D+G Y C   N     QG+ +L V+
Sbjct: 61  VQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (129), Expect = 6e-10
 Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 128 FTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIEN 186
              E    +      VTF C A S  P   + W              R       +TI N
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK----LPSRAMDFNGILTIRN 60

Query: 187 LRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           ++ SD G Y C  +N          ++V
Sbjct: 61  VQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
             ++     V  G   TF C A S      ++VW R                 +  LT+ 
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSP-AYTLVWTRLHNGKLPSRA----MDFNGILTIR 59

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
                D+G Y C         +  ATL VQ
Sbjct: 60  NVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 33  PKQQYVTRKKEVALR-NKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLI 90
           P    V  ++  ++R    V   C     +P    +W++      PS  +        L 
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG---ILT 57

Query: 91  IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
           I++V+ SD G+Y C  SN     +  +  L V
Sbjct: 58  IRNVQPSDAGTYVCTGSNMFAMDQG-TATLHV 88

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 2e-11
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 12/99 (12%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKELT-----------GGRYTI 266
           P             G   VLTC    G+P  E  W  +   +                  
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             TG+L    ++ +D+GEY+C ARN  GT   S ++ ++
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 1e-09
 Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 9/98 (9%)

Query: 126 PYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI-- 182
           P         +A         C    G P  E  W  +G  +   P + R     + +  
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 183 ------TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
                   + L  SDTG Y C A N  G       V +
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 7/99 (7%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEP-------IDFESEPRFVQS 361
                        G  A   C+            +  G            F +    +  
Sbjct: 4   SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP 63

Query: 362 NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
               L     S  D+G+Y+C A+           + ++ 
Sbjct: 64  TTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 45  ALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSL---------IIKHV 94
           A    +  L C    G+P  +  W KDG+ +  + + ++     S          +   +
Sbjct: 14  ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 73

Query: 95  EFSDQGSYTCEVSNGVGEAKS 115
             SD G Y+CE  NG G   +
Sbjct: 74  SASDTGEYSCEARNGYGTPMT 94

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 501 EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS 560
           +  P  V  +     G ++  L W +PEQPNG+++ Y+IKY             +     
Sbjct: 1   QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKE------MQSYSTL 54

Query: 561 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
              TT A ++GL+P T+Y   +   T AG G  S
Sbjct: 55  KAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFS 88

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 6e-06
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 404 APSNFTLIQVIDAKK--AVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           APS   +I+   A +    + W    P+   G    Y+++ + +     S   L   K  
Sbjct: 3   APSQVVVIRQERAGQTSVSLLWQE--PEQPNGIILEYEIKYYEKDKEMQSYSTL---KAV 57

Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
           +T   V    P ++   +V A   A  G  S+ +   T +
Sbjct: 58  TTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 97

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETG----DLK 273
            P+I  A +      G T  L     GAP P   W             +++       + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
                 ADSG Y    +N+LG  +    + V+
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (121), Expect = 8e-09
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRIT 183
            P        I      T   E    G P+P   W       + AP            I 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
             + +++D+GNY     N LG       V V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (114), Expect = 7e-08
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 1/91 (1%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
            I       +++AG +     + +  P    +         +  E        +  S+  
Sbjct: 4   KILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKS-STTSIFF 62

Query: 369 TKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
             +   DSG Y  + + EL   EA   + VQ
Sbjct: 63  PSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 49  KKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ--GNYGKSLIIKHVEFSDQGSYTCEV 106
               L   F G P P   W+        +  +     +   S+     + +D G+Y  +V
Sbjct: 18  FTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKV 77

Query: 107 SNGVGEAKSYSIDLSV 122
            N +GE ++   ++ V
Sbjct: 78  KNELGEDEA-IFEVIV 92

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 3e-11
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI---TIENLR 188
           P  +  ++ + V   C   G+ EP+I WV +G  +             + I   +++++ 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 189 KSDTGNYGCNATNSLGYVY-KDVYVNV 214
           +SD G Y C   +       + V++ V
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 224 APKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYT------ILETGDLKITDV 277
           AP       G+ V L C V G  +P++ W+ +   +                G L +  V
Sbjct: 2   APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV 61

Query: 278 AFADSGEYTCFARNKLGTAQG-SGSLTVK 305
             +D+G Y C   +   T       LTV+
Sbjct: 62  ERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINP----SDRISQGNYGKSLIIKHVEFSDQ 99
              + + V+L C   G   P   W KDG  +         +S+ ++   L +K VE SD 
Sbjct: 7   TVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDA 66

Query: 100 GSYTCEVSNGVGEAKSYSIDLSV 122
           G Y C+V +G     S  + L+V
Sbjct: 67  GRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIV-WLRGSEPIDFESEPRFVQSNDYSLTVTKS 371
            P    V  GQ     C+        +  V      + +D    P   Q     L++   
Sbjct: 2   APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV 61

Query: 372 SELDSGQYTCRAQTELDFIEAQ-ATLTVQ 399
              D+G+Y C+ +   +   +Q   LTV+
Sbjct: 62  ERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 3e-11
 Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 33/123 (26%)

Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKEL----------------- 259
           H       P     V G  + L   + G P P V W     +                  
Sbjct: 8   HLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGD 67

Query: 260 -------------TGGRYTILETGD---LKITDVAFADSGEYTCFARNKLGTAQGSGSLT 303
                        T GR  +  T D     +      D G YT   +N +G  Q + ++ 
Sbjct: 68  SDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

Query: 304 VKE 306
           V +
Sbjct: 128 VID 130

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 30/114 (26%)

Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR---------- 181
           P+ I       +  +   SG P P + W       ++AP  P      +           
Sbjct: 16  PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 75

Query: 182 --------------------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
                                T+E   K D G Y     N +G    ++ V V+
Sbjct: 76  KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 3e-07
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 32/111 (28%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR------------------------ 79
           V +   K+ L     G P P  IW K     N +                          
Sbjct: 20  VVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLC 79

Query: 80  -------ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
                  +          ++  E  D+G YT  V N VGE +  ++ + V+
Sbjct: 80  ETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV-NLTVKVI 129

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 28/113 (24%)

Query: 314 PEDYEVEAGQSATFRCNAVSDP--------------------------SLKLSIVWLRGS 347
           P+   V AG           DP                              S  W+   
Sbjct: 16  PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 75

Query: 348 EPIDFESEPRFVQSNDY--SLTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
           + +        V++       TV  + + D G YT   +  +   +   T+ V
Sbjct: 76  KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 57.4 bits (137), Expect = 5e-11
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE----LTGGRYTILETGDLK 273
            P + + P +    +    VL C + G  +          +             + G L 
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 274 ITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                 +D G Y CFA    G A  S  ++ ++
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVAS-SRVISFRK 93

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 54.3 bits (129), Expect = 7e-10
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH-NGKPISQAPPNPRRKVGPNRIT 183
            P    +P  +   E      EC   G  +   +    +GK  +    N   +     + 
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 184 IENLRKSDTGNYGCNATNSLG 204
               + SD G+Y C A    G
Sbjct: 62  FLRPQASDEGHYQCFAETPAG 82

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
           + DQP +            C    +    +   W +  +  +++     ++ ++ SL   
Sbjct: 5   LKDQPAEVLFRENNPTVLECIIEGNDQ-GVKYSWKKDGKSYNWQEHNAALRKDEGSLVFL 63

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
           +    D G Y C A+T      ++  ++ + 
Sbjct: 64  RPQASDEGHYQCFAETPAGVASSR-VISFRK 93

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 46.2 bits (108), Expect = 5e-07
 Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 2/81 (2%)

Query: 44  VALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD--RISQGNYGKSLIIKHVEFSDQGS 101
           +   N    L CI  G         K             +      SL+    + SD+G 
Sbjct: 13  LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGH 72

Query: 102 YTCEVSNGVGEAKSYSIDLSV 122
           Y C      G A S  I    
Sbjct: 73  YQCFAETPAGVASSRVISFRK 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 6e-11
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 218 APEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD----- 271
           +    +  +  Y V  G  + LT  +      EV W+ N +E+       +         
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 63

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           L I+  + AD   Y C    +  + +    L VKE
Sbjct: 64  LTISQCSLADDAAYQCVVGGEKCSTE----LFVKE 94

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 305 KEHTHITDQPED-YEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSND 363
           K+ T    + E  Y+V  G         ++D   ++  +       +             
Sbjct: 3   KKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 61

Query: 364 YSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
            +LT+++ S  D   Y C    E    +    L V+
Sbjct: 62  RTLTISQCSLADDAAYQCVVGGE----KCSTELFVK 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 9e-07
 Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 125 APYFTVEPEFINAAEE-ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
           +  F  + E      +   +    + +   + E+ W+ NG+ I  +      +    + T
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 63

Query: 184 I--ENLRKSDTGNYGCNATNS 202
           +       +D   Y C     
Sbjct: 64  LTISQCSLADDAAYQCVVGGE 84

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 8e-11
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 16/105 (15%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAP---KPEVNWIHNQKE-------------LTG 261
                  P+D     G ++  + RV GA     P V W   +                + 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 262 GRYTILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
            R + +   +L ITD   A +G Y C    K      + +LTV E
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 9e-09
 Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 11/104 (10%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWL-----------RGSEPIDFESEPRF 358
              +P+D EV  G S TF         LK  +V              G      +S  R 
Sbjct: 7   FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66

Query: 359 VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPL 402
            +   + L +T +    +G Y C   T+  F  +   LTV   +
Sbjct: 67  SKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEAM 110

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 13/103 (12%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLP---EPEIHWVHNGKPISQAPPN--------- 172
              F + P+        ++TF  + +G      P + W         +            
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 173 -PRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
               KV    + I + + + TG Y C  +    +   +  + V
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 54  FCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA 113
              F G  +  +      + ++ S   +   Y   L I   + +  G Y CEVS      
Sbjct: 39  VKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFD 98

Query: 114 KSYSIDLSVLAA 125
            S + +L+V  A
Sbjct: 99  CS-NFNLTVHEA 109

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 9e-11
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 3/111 (2%)

Query: 392 AQATLTVQVPLEAPSNFTLIQV-IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
           A  T    VP   P + T++      K  +V+W P  P    G   GY +   T+ + E 
Sbjct: 2   AHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQP--PSEANGKITGYIIYYSTDVNAEI 59

Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
               +    G   T ++ +    +  + ++ A N    GP SE + F TP+
Sbjct: 60  HDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK 110

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 499 TPEGVPGTVQ---SLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 555
           T E VP +     ++ +         + W  P + NG + GY I Y +        + + 
Sbjct: 6   TFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNA---EIHDW 62

Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
           +         + ++  L   T Y   +      G G  S
Sbjct: 63  VIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMS 101

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 682 WTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
            T+ + E     +    G   T ++ +    +  + ++ A N    GP SE + F TP+
Sbjct: 52  STDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK 110

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 30  RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ----GNY 85
           +  P  QYV+ K  +A       ++C++G  P+    + K+G  +N +            
Sbjct: 1   KGEPVPQYVS-KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS 59

Query: 86  GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
           GK L+ K     D+G YTCEV NGVG+ + +S+ L+V+
Sbjct: 60  GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 51.8 bits (123), Expect = 5e-09
 Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGG------RYTILETGD 271
            P+     KD     G   ++ C     P    N+  N K++ G       R+       
Sbjct: 5   VPQYV--SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQ-GSGSLTV 304
           L        D G YTC   N +G  Q  S  LTV
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 8/94 (8%)

Query: 130 VEPEFIN----AAEEETVTFECKASGLPEPEIHWVHNGK---PISQAPPNPRRKVGPNRI 182
             P++++    A   +     C     P    ++  NGK      +       +    R+
Sbjct: 4   PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 63

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKD-VYVNVL 215
             +     D G Y C   N +G   K  + + V+
Sbjct: 64  LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.2 bits (85), Expect = 8e-04
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 2/87 (2%)

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIV-WLRGSEPIDFESEPRFVQSNDYSLTVTKSS 372
            +D   +AG      C   S+P    +     +       +   R  +++   L    + 
Sbjct: 10  SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL 69

Query: 373 ELDSGQYTCRAQTELDFIEAQ-ATLTV 398
             D G YTC     +   +     LTV
Sbjct: 70  PEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 3e-10
 Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 10/99 (10%)

Query: 126 PYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT- 183
           P         +          C    G P  E  W  +G  +  A     R    +  T 
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 184 --------IENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
                    + +   D+G Y C A N  G   +    ++
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 3e-10
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 13/99 (13%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKELT------------GGRYT 265
           P             G   VLTC    G+P  E +W  +   +                  
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
             ++GDL    V   DSGEY C A+N  GTA  S +  +
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 33  PKQQYVTRKKEVALRNKKVELFC-IFGGTPLPQTIWSKDGVPINPSD----------RIS 81
           P +  ++    V +   +  L C    G+P  +  W KDG+ +  +D            +
Sbjct: 3   PSKPTISVPSSVTI-GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 82  QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA-KSYSIDLSV 122
                  LI   V   D G Y C+  NG G A +S +  +  
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 16/101 (15%), Positives = 25/101 (24%), Gaps = 10/101 (9%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT- 367
                     V  G  A   C+   D S      W +    +      +     + S T 
Sbjct: 4   SKPTISVPSSVTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 368 --------VTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
                       +  DSG+Y C+AQ             +  
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 3e-10
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 16/106 (15%)

Query: 222 TEAPKDEYTVDGKTVVLTCRVFGAP---KPEVNWI-------------HNQKELTGGRYT 265
            E P+      G+ +    +V       KP + W              H Q + T  R++
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT 311
            + T +++I       +G Y C    K      S  L V E T  T
Sbjct: 64  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 311 TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEP-----------RFV 359
            ++P+   V+ G+  TF     ++  L+   +     + +D  S+            R  
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPLEAPSN 407
           +   + + + K+ +  +G Y C    +  F      L V        N
Sbjct: 64  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPN 111

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 16/110 (14%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLP---EPEIHWVHNGKPISQAPPNPRRKVGPN---- 180
           F  +P+       E +TF  K        +P I W         +      ++       
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 181 ------RITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA---HAPEI 221
                  + I   + +  GNY C  T    +      + V       P I
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 112

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 75  NPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAP 126
             +       Y   + I   + +  G+Y CEV+       S S DL V  + 
Sbjct: 56  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD-SCSFDLEVHEST 106

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 5e-10
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
            P   P + T +Q + ++   V+W     +   G  RGY++       G      ++  K
Sbjct: 7   APDGPPMDVT-LQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 65

Query: 460 GESTTTE--VDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
               +    +D     ++    V AFN A  GP S  I+  T E
Sbjct: 66  ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE 109

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 4e-08
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 499 TPEGVP-GTVQSLEAIPLGSSAFYLKWVKPEQP--NGVLMGYKIKYQSVKGTKVGPLLER 555
           T E  P G    +   P+ S +  + W  P++   NGV+ GY+I Y+       G     
Sbjct: 3   TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQY-SI 61

Query: 556 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
           +   +   +    L  L+   +Y + +  + +AG G  S
Sbjct: 62  VEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSS 100

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 38/141 (26%)

Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
            P   P +V  +  T  ++ ++W A  +   N     Y+I +R ++ G       V    
Sbjct: 7   APDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK- 65

Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 719
                                                  G+S    +D     ++    V
Sbjct: 66  -------------------------------------ATGDSEVYTLDNLKKFAQYGVVV 88

Query: 720 LAFNGAYNGPPSEIISFVTPE 740
            AFN A  GP S  I+  T E
Sbjct: 89  QAFNRAGTGPSSSEINATTLE 109

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 7e-10
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR 181
           V  AP  T          +          G P+P + W +NG  ++++     +    N 
Sbjct: 1   VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 182 ------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI 221
                 + ++N    + G+Y   A N  G   K +  + +   P I
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG-WPGI 102

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTG---------GRYTILE 268
           AP IT     E         +   V G PKP + W +N   L                  
Sbjct: 4   APTITFL---ESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 269 TGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI 310
            G L++ +    ++G+YT  A+N+ G  +   S        I
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK-------SLIIKHVEFSDQGSYT 103
             +     G P P   W  +G  +N S  I    +          L + +    + G YT
Sbjct: 19  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 78

Query: 104 CEVSNGVGEAKSYSIDLSVLAAP 126
               N  G+ +   I    +  P
Sbjct: 79  LIAKNEYGKDEK-QISAHFMGWP 100

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 8e-10
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 495 ISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLE 554
           I  +T  GVPG   + +A P   ++  L W  P   +  +  Y++ Y+  +  +      
Sbjct: 2   IQVITQTGVPGQPLNFKAEPESETSILLSWTPPR--SDTIANYELVYKDGEHGEE----- 54

Query: 555 RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
               I+    TS +L GL+P++ Y   LA  +  G GA +
Sbjct: 55  --QRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGAST 92

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 10/111 (9%)

Query: 391 EAQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG 450
           + Q      VP   P NF   +       ++SW P    ++  +   YK           
Sbjct: 1   DIQVITQTGVP-GQPLNFK-AEPESETSILLSWTPPRSDTIANYELVYK--------DGE 50

Query: 451 SIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
              E  +     T+  +    P S  + R+ A +    G  +  IS  T +
Sbjct: 51  HGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 101

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 11/68 (16%), Positives = 20/68 (29%)

Query: 673 PYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE 732
           P    +              E  +     T+  +    P S  + R+ A +    G  + 
Sbjct: 34  PRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTA 93

Query: 733 IISFVTPE 740
            IS  T +
Sbjct: 94  EISARTMQ 101

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 1e-09
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 11/87 (12%)

Query: 231 VDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGR-----------YTILETGDLKITDVAF 279
           V+     +   V G P P + W+ N   L                  +  G L++     
Sbjct: 13  VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 72

Query: 280 ADSGEYTCFARNKLGTAQGSGSLTVKE 306
            ++G YT  A N  G A  S      +
Sbjct: 73  VNNGNYTLLAANPFGQASASIMAAFMD 99

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 3e-09
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 8/87 (9%)

Query: 137 AAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP--------NPRRKVGPNRITIENLR 188
           A E           G P P + W+ NG  +++                V    + +    
Sbjct: 12  AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPT 71

Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVL 215
             + GNY   A N  G     +    +
Sbjct: 72  HVNNGNYTLLAANPFGQASASIMAAFM 98

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 4e-09
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 15/112 (13%)

Query: 31  HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI---------S 81
           H P    +    E+        +     G P P   W  +G  +N +  I         +
Sbjct: 2   HMPASVQLHTAVEMHH----WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57

Query: 82  QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEPE 133
           +      L +      + G+YT   +N  G+A + SI  + +  P F   PE
Sbjct: 58  ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA-SIMAAFMDNP-FEFNPE 107

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 13/102 (12%)

Query: 311 TDQPEDYEVEAGQSATFRCNAVS---DPSLKLSIVWLRGSEPID--------FESEPRFV 359
           +  P   ++         C   S    P    S+ WL     ++        F       
Sbjct: 1   SHMPASVQLHTAVEMHHWCIPFSVDGQP--APSLRWLFNGSVLNETSFIFTEFLEPAANE 58

Query: 360 QSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
                 L + + + +++G YT  A        A         
Sbjct: 59  TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 217 HAPEITEA--PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKI 274
           + P + E   P +    +       C+ +G P PE+  + +                   
Sbjct: 1   YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE---------S 51

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
             V     G Y C AR+  G      ++ V  
Sbjct: 52  VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 7e-08
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 14/94 (14%)

Query: 125 APYFTVE--PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
            P       P      E    T  C+A G P PE+  + +G                   
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------- 50

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
               + +   G Y C A ++ G V ++V VNVL+
Sbjct: 51  -SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 14/91 (15%)

Query: 311 TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTK 370
            D P ++        T  C A  +P     +  L+                         
Sbjct: 8   RDCPGNWTWPENSQQTPMCQAWGNP--LPELKCLK------------DGTFPLPIGESVT 53

Query: 371 SSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
            +    G Y CRA++    +  + T+ V  P
Sbjct: 54  VTRDLEGTYLCRARSTQGEVTREVTVNVLSP 84

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 12/77 (15%)

Query: 48  NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS 107
           N +    C   G PLP+    KD                       V    +G+Y C   
Sbjct: 19  NSQQTPMCQAWGNPLPELKCLKD-----------GTFPLPIGESVTVTRDLEGTYLCRAR 67

Query: 108 NGVGEAKSYSIDLSVLA 124
           +  GE  +  + ++VL+
Sbjct: 68  STQGEV-TREVTVNVLS 83

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
               +PG   +L A     ++  + W  P   NG +  YK+ Y      K          
Sbjct: 6   PEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKE--------Q 57

Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
             D ++ S  + GL+  T+Y   +  Y K G G  +
Sbjct: 58  DVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVST 93

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 9e-07
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV 457
           VQ+P     N             V+W    P S  G  + YK+        E    +   
Sbjct: 8   VQLP-GPAPNLR-AYAASPTSITVTWET--PVSGNGEIQNYKLYYM-----EKGTDKEQD 58

Query: 458 NKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
               S +  ++     ++   RV+A+N    G  +  ++  T  
Sbjct: 59  VDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 102

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 3e-09
 Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 5/91 (5%)

Query: 223 EAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELTGGR----YTILETGDLKITDV 277
           E      +   +  V  C +     K  + W  +  +                 L     
Sbjct: 7   EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 66

Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHT 308
              DSG Y C  RN     +   S    E+ 
Sbjct: 67  KVEDSGHYYCVVRNSSYCLRIKISAKFVENE 97

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 131 EPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAP-PNPRRKVGPNRITIENLR 188
           E   + ++  E     C  +    +  I W  +      +     R      ++     +
Sbjct: 8   EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 67

Query: 189 KSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI 221
             D+G+Y C   NS   +   +    + + P +
Sbjct: 68  VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNL 100

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 2/87 (2%)

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE-SEPRFVQSNDYSLTVTKSS 372
                  A +     C    +   K +I W +          +   +  +   L    + 
Sbjct: 9   KIILVSSANEIDVRPCPLNPNEH-KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 67

Query: 373 ELDSGQYTCRAQTELDFIEAQATLTVQ 399
             DSG Y C  +     +  + +    
Sbjct: 68  VEDSGHYYCVVRNSSYCLRIKISAKFV 94

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           VP  AP N + ++V ++K  ++ W P +P +  G   GYK++               +  
Sbjct: 10  VPSAAPQNLS-LEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTE--TLVS 66

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQ 508
           G   +  ++     ++   RV A      GP ++ +S  T E      +
Sbjct: 67  GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 115

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 495 ISFVTPEGVP-GTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGP 551
           ++  T   VP    Q+L      S +  + W    P   NG + GYKI+Y+         
Sbjct: 2   VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKS--- 58

Query: 552 LLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
             +    +   T  S  + GL+  T+Y   +A  T  G G  +
Sbjct: 59  --DVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPAT 99

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 20/142 (14%), Positives = 37/142 (26%), Gaps = 42/142 (29%)

Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
           VP   P N+        +++I W        N     Y+I + R  + ++   + ++   
Sbjct: 10  VPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRY-RKASRKSDVTETLVSGT 68

Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV 719
           Q   ++        Y                                           RV
Sbjct: 69  QLSQLIEGLDRGTEYNF-----------------------------------------RV 87

Query: 720 LAFNGAYNGPPSEIISFVTPEG 741
            A      GP ++ +S  T E 
Sbjct: 88  AALTINGTGPATDWLSAETFES 109

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAV-SDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLT 367
            +   P       G+  T RC      P  +L++V LRG +    + EP   +  + + T
Sbjct: 6   RVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE--LKREPAVGEPAEVTTT 63

Query: 368 VTKSSELDSGQYTCRAQTELDFIEAQATLTVQVPL 402
           V    +    Q++CR + +L     +       P 
Sbjct: 64  VLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPY 98

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 5e-08
 Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 4/92 (4%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGA---PKPEVNWIHNQKELTGGRYTILE-TGDLKI 274
             +  AP   +   GK + L C+V G     +  V  +  +KEL               +
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV 64

Query: 275 TDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
                    +++C     L             
Sbjct: 65  LVRRDHHGAQFSCRTELDLRPQGLELFENTSA 96

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 1/92 (1%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI 184
               + P        + +T  C+  G  P  ++  V               +      T+
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV 64

Query: 185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVLA 216
              R      + C     L     +++ N  A
Sbjct: 65  LVRRDHHGAQFSCRTELDLRPQGLELFENTSA 96

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 7e-09
 Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 9/96 (9%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI---HNQKELTGGRYTILETGD--- 271
            P      ++     G+     C   G             + ++       +  +     
Sbjct: 2   TPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 272 -LKITDVAFADSGEYTCFARNKLGTAQGS-GSLTVK 305
              + +    D+G+Y C  R + G    +   L VK
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 96

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 3e-08
 Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 5/84 (5%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV----GPN 180
            P+F    + +     +  TF+C A G           G  +  AP    +         
Sbjct: 2   TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 181 RITIENLRKSDTGNYGCNATNSLG 204
              + N  K D G Y C      G
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGG 84

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 313 QPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQS--NDYSLTVTK 370
           + ++ EV AGQ ATF+C+A+        +             E +   S     S  V  
Sbjct: 7   RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVN 66

Query: 371 SSELDSGQYTCRAQTELDFIEA-QATLTVQ 399
           +++ D+G+Y C  +TE     +  A L V+
Sbjct: 67  TTKRDAGKYRCMIRTEGGVGISNYAELVVK 96

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 5/77 (6%)

Query: 51  VELFCIFGGTPLPQTIWSKDGVPINPSD-----RISQGNYGKSLIIKHVEFSDQGSYTCE 105
               C   G  +        G+ +  +        S   +  S  + +    D G Y C 
Sbjct: 19  ATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM 78

Query: 106 VSNGVGEAKSYSIDLSV 122
           +    G   S   +L V
Sbjct: 79  IRTEGGVGISNYAELVV 95

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 9e-09
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 233 GKTVVLTC------RVFGAPKPEVNWIH-NQKELTGGRYTILETGDLKITDVAFADSGEY 285
                L C      +      P++ W    +  L    +       L + +VA    G Y
Sbjct: 14  AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNY 73

Query: 286 TCFARNKLGTAQGSGSLTVKEHTHITDQP 314
           TC A       Q   +  ++  T   ++P
Sbjct: 74  TCHASYTYLGKQYPITRVIEFITLEENKP 102

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 59  GTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI 118
              LP+  W KD  P+   +    G     LI+ +V    +G+YTC  S      K Y I
Sbjct: 31  NNELPKLQWYKDCKPLLLDNIHFSGVKD-RLIVMNVAEKHRGNYTCHASYTYLG-KQYPI 88

Query: 119 DLSV 122
              +
Sbjct: 89  TRVI 92

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 141 ETVTFEC------KASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGN 194
                 C      K      P++ W  + KP+     N       +R+ + N+ +   GN
Sbjct: 15  GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL--DNIHFSGVKDRLIVMNVAEKHRGN 72

Query: 195 YGCNATNSLGYVYKDVYVNV 214
           Y C+A+ +       +   +
Sbjct: 73  YTCHASYTYLGKQYPITRVI 92

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 7e-04
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 6/86 (6%)

Query: 319 VEAGQSATFRCNAVS----DPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSEL 374
           +         C  +     + +    + W +  +P+  ++           L V   +E 
Sbjct: 11  LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN--IHFSGVKDRLIVMNVAEK 68

Query: 375 DSGQYTCRAQTELDFIEAQATLTVQV 400
             G YTC A       +   T  ++ 
Sbjct: 69  HRGNYTCHASYTYLGKQYPITRVIEF 94

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 220 EITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD----LKIT 275
           E+ +         G+T      +   P     W    + LT      +        L + 
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILH 61

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           +     +GE +  A N    A+ + +L VKE
Sbjct: 62  NCQLGMTGEVSFQAAN----AKSAANLKVKE 88

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 8e-06
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
           +       EV  G++A F    +S+P +               + E        + L + 
Sbjct: 4   VEKPLYGVEVFVGETAHFEI-ELSEPDVHGQWKLKGQPLTASPDCEIIEDG-KKHILILH 61

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQ 399
                 +G+ + +A       ++ A L V+
Sbjct: 62  NCQLGMTGEVSFQAAN----AKSAANLKVK 87

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP-NPRRKVGPNRITIEN 186
                  +     ET  FE + S  P+    W   G+P++ +P          + + + N
Sbjct: 4   VEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 187 LRKSDTGNYGCNATNS 202
            +   TG     A N+
Sbjct: 63  CQLGMTGEVSFQAANA 78

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 126 PYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITI 184
           P+FTVEP+ +           C+A        I W      I            P+   +
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA--------PSPSVL 53

Query: 185 ENLRKSDTGNYGCNATNSLGYVY-KDVYVNV 214
                + +  + C A N  G    +   V++
Sbjct: 54  NVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 10/92 (10%)

Query: 309 HITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTV 368
             T +P+D  V         C AV  P   ++IVW RG+  I                 +
Sbjct: 3   FFTVEPKDLAVPPNAPFQLSCEAVGPPE-PVTIVWWRGTTKIG--------GPAPSPSVL 53

Query: 369 TKSSELDSGQYTCRAQTELDF-IEAQATLTVQ 399
             +    S  ++C A           AT+ +Q
Sbjct: 54  NVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 85

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 7/89 (7%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277
           P  T  PKD          L+C          + W     ++ G            +   
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-----APSPSVLNVT 56

Query: 278 AFADSGEYTCFARNKLGTAQ-GSGSLTVK 305
               S  ++C A N  G A   + ++ ++
Sbjct: 57  GVTQSTMFSCEAHNLKGLASSRTATVHLQ 85

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 13/90 (14%)

Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIK 92
           PK   V       L           G       +W +    I               ++ 
Sbjct: 8   PKDLAVPPNAPFQLS------CEAVGPPEPVTIVWWRGTTKIGGPAPSPS-------VLN 54

Query: 93  HVEFSDQGSYTCEVSNGVGEAKSYSIDLSV 122
               +    ++CE  N  G A S +  + +
Sbjct: 55  VTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 16/89 (17%), Positives = 24/89 (26%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           P   V+    +    + V   C+  G    +  W+      S                  
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
                +  N  C A N +G     V VNV
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 6e-06
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKIT--- 275
           P +     +     G  V+L C+V G    +  WI  + E +           L +T   
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTV 304
             +  +    TC+A N +G A+ S  + V
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 2/89 (2%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
           +  Q  +  V+ G     RC             W+                 +       
Sbjct: 5   LKVQVPNASVDVGDDVLLRCQVEGRG--LEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTV 398
            +S+L+    TC A+ ++   E    + V
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGP 179
           L+    P   V    + +   ++VT  C      +         KP + + P+    +G 
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG- 59

Query: 180 NRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
            R+ + +++  D+GNY C            + V+V
Sbjct: 60  RRLLLRSVQLHDSGNYSCYRAGRPAGTVH-LLVDV 93

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 4e-07
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKP-EVNWIHNQKELTGGRYTILETG-DLKIT 275
            P    A     ++ G +V LTC          V+W+  +             G  L + 
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65

Query: 276 DVAFADSGEYTCFARNKLGTAQGSGSLTV 304
            V   DSG Y+C+   +     G+  L V
Sbjct: 66  SVQLHDSGNYSCYRAGRPA---GTVHLLV 91

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 5e-05
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 30  RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSL 89
           R  P Q+ V R    +L    V L C         T+      P   S        G+ L
Sbjct: 4   RRCPAQE-VARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRL 62

Query: 90  IIKHVEFSDQGSYTCEVSNGVGEAKSYSID 119
           +++ V+  D G+Y+C  +          +D
Sbjct: 63  LLRSVQLHDSGNYSCYRAGRPAGTVHLLVD 92

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 17/91 (18%), Positives = 22/91 (24%), Gaps = 6/91 (6%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVT 369
                       G S T  C  V       ++ W+         S P         L + 
Sbjct: 9   QEVARGVLTSLPGDSVTLTCPGVEPED-NATVHWVLR--KPAAGSHPSRWAGMGRRLLLR 65

Query: 370 KSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
                DSG Y+C              L V V
Sbjct: 66  SVQLHDSGNYSCYRAGRP---AGTVHLLVDV 93

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 3e-08
 Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 5/117 (4%)

Query: 393 QATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQS---LRGHFRGYKVQTWTEKDGE 449
           + T   +  L           I A+  V++W+P S                         
Sbjct: 9   EETKAFEALLSNIVKPV-ASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISST 67

Query: 450 GSIRELI-VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPG 505
           G   +   V  GE T   ++   PA    A+V A   +  G PSE   F T    P 
Sbjct: 68  GKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD 124

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 18/87 (20%), Positives = 26/87 (29%)

Query: 655 VLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASK 714
           VL W     ++  +                       +   V  GE T   ++   PA  
Sbjct: 35  VLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMD 94

Query: 715 NFARVLAFNGAYNGPPSEIISFVTPEG 741
             A+V A   +  G PSE   F T   
Sbjct: 95  YHAKVQAEYNSIKGTPSEAEIFTTLSC 121

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 7/101 (6%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPN-----GVLMGYKIKYQSVKGTKVGPLL 553
             E +   +    A  + +    L W  P            +     Y+ +  +      
Sbjct: 13  AFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKD-- 70

Query: 554 ERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
            +   +     T+  L  L+P+  Y   +     +  G  S
Sbjct: 71  GKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPS 111

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-08
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH---------NGKPISQAPPNP 173
           + +         +   E   V   C  SG   P + W                  A    
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 174 RRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
           R    P  IT +++ + DTG Y C  +   G  Y +V V ++
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 5e-07
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 12/99 (12%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIH------------NQKELTGGRYT 265
           +  +  +  +    +   V L+C   G   P V W              N+   +     
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 266 ILETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
                 +    V   D+G YTC    + G + G   + +
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-06
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 13/108 (12%)

Query: 300 GSLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDF------- 352
           GS+TV           +  +         C      S ++   + +G             
Sbjct: 3   GSVTVHS------SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKIT 56

Query: 353 ESEPRFVQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
            S    V      +T    +  D+G YTC    E      +  + + V
Sbjct: 57  ASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIV 104

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 48  NKKVELFCIFGGTPLPQTIWS----------KDGVPINPSDRISQGNYGKSLIIKHVEFS 97
           N  V+L C + G   P+  W                I  S           +  K V   
Sbjct: 19  NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 78

Query: 98  DQGSYTCEVSNGVGEA-KSYSIDLSVL 123
           D G+YTC VS   G +     + L VL
Sbjct: 79  DTGTYTCMVSEEGGNSYGEVKVKLIVL 105

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 8/99 (8%)

Query: 125 APYFTVEPEFINAAEEETVTFECKASGLPE-PEIHWVHNGKPISQAPPNPRRKVGPNR-- 181
              +       +    +    EC        P + W            + +      +  
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 182 ----ITIENLRKSDTGNYGCNATNSLGYVY-KDVYVNVL 215
               +  E +  +D G+Y C+A      +      + V 
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 11/100 (11%)

Query: 218 APEITEAPKDEYTVDGKTVVLTCRVFGAP-KPEVNWIHNQKELT---------GGRYTIL 267
                +   +   + G    L C V     +P V W                       +
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 268 ETGDLKITDVAFADSGEYTCFARNKLGTAQG-SGSLTVKE 306
               L    V   D+G Y C A  +    +  S +L V +
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTD 102

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 35  QQYVTRKKEV-ALRNKKVELFCIFGGTP-LPQTIWSKDGVPINPSDRISQGNYGKS---- 88
           Q Y+ R+ E   L     EL C        P   W K            Q ++ +     
Sbjct: 4   QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNIS 63

Query: 89  ---LIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL 123
              L  + V  +D GSY C  +      +S+S  L V 
Sbjct: 64  FFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 311 TDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTK 370
             +  ++ + AG      C      + +  + W + +     + E R     +       
Sbjct: 7   IKRQSEHSILAGDPFELECPVKYCAN-RPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFF 65

Query: 371 SSEL------DSGQYTCRAQTELDFIEAQ-ATLTVQ 399
                     D+G Y C A  + + IE+   TL V 
Sbjct: 66  ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.3 bits (117), Expect = 4e-08
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 15/87 (17%)

Query: 233 GKTVVLTCRVFGAPKPEVNWIHNQKELT--------------GGRYTILETGDLKITDVA 278
           G  + L    F     +++ +  ++  T               G + IL  GDLKI ++ 
Sbjct: 10  GHGINLNIPNF-QMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 68

Query: 279 FADSGEYTCFARNKLGTAQGSGSLTVK 305
             DSG Y     +  GT   + +L ++
Sbjct: 69  RDDSGTYNVTVYSTNGTRILNKALDLR 95

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 8/87 (9%)

Query: 322 GQSATFRCNAVSDPSLKLSIVWLRGSEPID--------FESEPRFVQSNDYSLTVTKSSE 373
           G                  + W RGS  +         F     F    +  L +   + 
Sbjct: 10  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 69

Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQV 400
            DSG Y     +          L +++
Sbjct: 70  DDSGTYNVTVYSTNGTRILNKALDLRI 96

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 131 EPEFINAAEEETVTFECKASGLPE--PEIHWVHNGKPISQ-------APPNPRRKVGPN- 180
           +   +  A    +        + +   E+ W      +++          +   ++  N 
Sbjct: 1   DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 60

Query: 181 RITIENLRKSDTGNYGCNATNSLG--YVYKDVYVNVL 215
            + I+NL + D+G Y     ++ G   + K + + +L
Sbjct: 61  DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL 97

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 63  PQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY-SIDLS 121
               + +   P   S        G  L IK++   D G+Y   V +  G      ++DL 
Sbjct: 37  LVAEFKRKMKPFLKSGAFEILANG-DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLR 95

Query: 122 VL 123
           +L
Sbjct: 96  IL 97

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-08
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTIL--------- 267
           + P I  + + ++ + G+   + C +   P P+      ++ +     +           
Sbjct: 5   NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64

Query: 268 --ETGDLKITDVAFA-DSGEYTCFARNKLGTAQGSGSLTVK 305
                 L I+++  A     Y C A N  G+      L  +
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 105

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 10/106 (9%)

Query: 120 LSVLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWV--------HNGKPISQAPP 171
           L+V   P  +   +  +A   E    +C     P P+                       
Sbjct: 2   LTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 60

Query: 172 NPRRKVGPNRITIENLRKS-DTGNYGCNATNSLGYVYKDVYVNVLA 216
               +   + +TI N+ ++     Y C A NS G   + + +    
Sbjct: 61  ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 106

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 11/116 (9%)

Query: 301 SLTVKEHTHITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQ 360
           +LTV     I+   +      G+    +C   S P     I W      ++  +  R+  
Sbjct: 1   TLTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLESGTSGRYTV 58

Query: 361 SND-------YSLTVTK-SSELDSGQYTCRAQTELDFIEAQATLTVQ-VPLEAPSN 407
                      +LT++          Y C A            L  Q   +  PS+
Sbjct: 59  ETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSS 114

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 8e-08
 Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 12/117 (10%)

Query: 391 EAQATLT-VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEK--D 447
           + Q  L  V V L  P       V+      V+W            +GY+V         
Sbjct: 9   QVQKELGDVLVRLHNPV------VLTPTTVQVTWTVDRQP---QFIQGYRVMYRQTSGLQ 59

Query: 448 GEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
              S + L        +  +           +V  +   + G  SE  +  T E   
Sbjct: 60  ATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESG 116

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 558
               V   V+    + L  +   + W    +    + GY++ Y+   G +     + L  
Sbjct: 13  ELGDVL--VRLHNPVVLTPTTVQVTWTVD-RQPQFIQGYRVMYRQTSGLQATSSWQNL-D 68

Query: 559 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
              PT  SA L  L+    Y I +  Y     G +S
Sbjct: 69  AKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDS 104

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 8/61 (13%), Positives = 17/61 (27%)

Query: 680 QTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 739
           +  +      S + L        +  +           +V  +   + G  SE  +  T 
Sbjct: 53  RQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTT 112

Query: 740 E 740
           E
Sbjct: 113 E 113

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 9e-08
 Identities = 11/100 (11%), Positives = 30/100 (30%), Gaps = 1/100 (1%)

Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
           P+  P        ++    ++ W  +   +      G+ +          S  +  + +G
Sbjct: 1   PVAGPYITF-TDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEG 59

Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 500
           +     +    P +    ++  FN       S ++   T 
Sbjct: 60  DRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETK 99

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAV-SDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS--- 365
           +    +   V  G+S T  C     +P   L++   RG+E + +E+  +   +   +   
Sbjct: 5   VILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATAT 64

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
              T   E     ++C A  +L             P
Sbjct: 65  FNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAP 100

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 6/92 (6%)

Query: 129 TVEPEFINAAEEETVTFECKASG---LPEPEIHWVHNGKPISQAPPN---PRRKVGPNRI 182
            +  +    A  ++ T EC+      L    +      + +         P  +      
Sbjct: 6   ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATF 65

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
                R+    N+ C A   L     +++   
Sbjct: 66  NSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 5e-06
 Identities = 11/102 (10%), Positives = 24/102 (23%), Gaps = 9/102 (8%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGA---PKPEVNWIHNQKELTGGRYTILETGD---- 271
            ++    +      GK+  + CRV          +      + L    +           
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62

Query: 272 --LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHIT 311
                T         ++C A   L +  G+          + 
Sbjct: 63  ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLE 104

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 18/101 (17%), Positives = 35/101 (34%)

Query: 495 ISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLE 554
           IS   P  +PG   +L    +G  +  L++         +  + ++ Q     +    L 
Sbjct: 2   ISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLL 61

Query: 555 RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
                ++P   S ++  L P T Y   +      G    S+
Sbjct: 62  IHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQ 102

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 11/97 (11%)

Query: 221 ITEAPKDEYTVDGKTVVLTC---RVFGAPKPEVNWIHNQKELTGG--------RYTILET 269
           +   P+     + +  +  C    V G P P ++W+HN + L           +   +  
Sbjct: 2   VYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 61

Query: 270 GDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKE 306
           G L        ++G YT  A+N LGTA  + +    +
Sbjct: 62  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 98

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 9e-07
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 129 TVE--PEFINAAEEETVTFEC---KASGLPEPEIHWVHNGKPISQAPPN-----PRRKVG 178
           TV   P  ++  E E     C      G P P +HW+HNG+P+ ++           ++ 
Sbjct: 1   TVYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 60

Query: 179 PNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
              +        + GNY   A N LG   + +  + L
Sbjct: 61  EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 97

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 53  LFCIFGGTPLPQTIWSKDGVPINPSDRISQGN------YGKSLIIKHVEFSDQGSYTCEV 106
           +  +  G P P   W  +G P+  S  I              L+       + G+YT   
Sbjct: 22  IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81

Query: 107 SNGVGEAKSYSIDLSVLAAPY 127
            N +G A   +I+   L  P+
Sbjct: 82  KNPLGTANQ-TINGHFLKEPF 101

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPE-QPNGVLMGYKIKYQSVKGTKVGPLLERL 556
            T   +P   + + A  + +    L W  P   P+G  + Y + Y      +     ER+
Sbjct: 5   ATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIAR-----ERV 59

Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
              S P      +  L P+T Y   +    K G G  S 
Sbjct: 60  ENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSA 98

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 393 QATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSI 452
            A  T      AP +     ++  +   ++W   +     G    Y V     K+G    
Sbjct: 2   HAPATTGPLPSAPRDVV-ASLVSTRFIKLTWRTPASDP-HGDNLTYSVFYT--KEGIARE 57

Query: 453 RELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
           R    +        +   +PA+    RV+A N   +G  S  +   T  
Sbjct: 58  RVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQP 106

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 19/114 (16%), Positives = 28/114 (24%), Gaps = 22/114 (19%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIV------------WLRGSEPIDFESEPR 357
           +           G  A   C      +     V              R  +  D E  P 
Sbjct: 5   VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 64

Query: 358 F----------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQVP 401
           +          +     +L +      D G YTC  +      EA   L V+ P
Sbjct: 65  YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 118

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 75  NPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPYFTVEP 132
              + I +G    +L I++V FSD+G YTC   +   + ++ +++L V   P++ + P
Sbjct: 71  LLKESIGEGKV--ALRIQNVRFSDEGGYTCFFRDHSYQEEA-AVELKV-EDPFYWINP 124

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 28/120 (23%)

Query: 224 APKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGD----------- 271
            P        G    L CR+          +   +        +   G            
Sbjct: 7   GPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYR 66

Query: 272 ----------------LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPE 315
                           L+I +V F+D G YTCF R+     + +  L V++  +  +   
Sbjct: 67  GRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPGR 126

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 24/124 (19%), Positives = 32/124 (25%), Gaps = 28/124 (22%)

Query: 128 FTVE--PEFINAAEEETVTFECKASGLPEPEIHWV----------------HNGKPISQA 169
           F V      I A   +     C+ S         V                   +   QA
Sbjct: 3   FRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQA 62

Query: 170 PPNPRR--------KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEI 221
           P    R          G   + I+N+R SD G Y C   +        V + V    P  
Sbjct: 63  PEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV--EDPFY 120

Query: 222 TEAP 225
              P
Sbjct: 121 WINP 124

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 22/199 (11%), Positives = 43/199 (21%), Gaps = 27/199 (13%)

Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
            P       ++   SS   LKW  P  PNG +  Y + ++                    
Sbjct: 2   NPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSE-----------LF 50

Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV-----------PFKNPDNVEGR 611
                      PS  +                                   K  +    R
Sbjct: 51  ELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFR 110

Query: 612 GSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTF 671
            +  + L                 +  +    +      ++       +  LV++    F
Sbjct: 111 KTFEDYLHNVVFVP-----RPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHF 165

Query: 672 QPYEIKVVQTWTEKDGEGS 690
             Y I++     +   E  
Sbjct: 166 TGYRIELQACNQDTPEERC 184

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 5e-07
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG---------KPISQAPPNPRRK 176
                    +   E E++   C  SG   P + W                  AP   R  
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 177 VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
              + IT  ++ + D G Y C  +   G  Y +V +++
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 9e-07
 Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 12/99 (12%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKE------------LTGGRYTI 266
             +  A  D    + +++ LTC   G   P V W   Q                      
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 267 LETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSLTVK 305
             +  +  + V   D+GEYTC    + G   G  S+ + 
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 7e-05
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 7/98 (7%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSI-------VWLRGSEPIDFESEPRFVQSN 362
           +     D +V   +S    C      S ++           L              V  +
Sbjct: 4   VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS 63

Query: 363 DYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
              +T +  +  D+G+YTC    E      + ++ + V
Sbjct: 64  SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 7e-04
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 48  NKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK----------SLIIKHVEFS 97
           N+ ++L C + G   P+  W             +                 +    V   
Sbjct: 16  NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK 75

Query: 98  DQGSYTCEVSNGVGEA-KSYSIDLSVL 123
           D G YTC VS   G+     SI L+VL
Sbjct: 76  DNGEYTCMVSEEGGQNYGEVSIHLTVL 102

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 8e-07
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
           PG    + +    ++A  L+W  P++  G L+GY+++Y                      
Sbjct: 1   PGRPTMMISTTAMNTAL-LQWHPPKELPGELLGYRLQYCRADEA------RPNTIDFGKD 53

Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVP 601
                + GL   T Y   LA   +AG G E +     P
Sbjct: 54  DQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTP 91

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGEST 463
            P+   +I       A++ W+P  P+ L G   GY++Q     +   +  +   +     
Sbjct: 3   RPTM--MISTTAMNTALLQWHP--PKELPGELLGYRLQYCRADEARPNTIDFGKD---DQ 55

Query: 464 TTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGV 503
              V      +    R+ A N A  G   E     TPE +
Sbjct: 56  HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKE-IRTPEDL 94

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.8 bits (107), Expect = 8e-07
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 126 PYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-IT 183
            +   E + +   E   V F C      P     W+ N  P        R        + 
Sbjct: 5   EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY 64

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAHAPEITEAPKD 227
           I     SD GNY C AT+ + ++ K V+        +++ A +D
Sbjct: 65  IAKTEASDLGNYSCFATSHIDFITKSVFSKF----SQLSLAAED 104

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 219 PEITEAPKDEYTVD-GKTVVLTCRV-FGAPKPEVNWIHNQKEL----TGGRYTILETGDL 272
            E +   +D   +  G  V+ TC      P     W+ N+        G R+    TG+L
Sbjct: 4   QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 63

Query: 273 KITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEHTHITDQPED 316
            I     +D G Y+CFA + +     S      + + ++   ED
Sbjct: 64  YIAKTEASDLGNYSCFATSHIDFITKS---VFSKFSQLSLAAED 104

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 53/101 (52%), Positives = 69/101 (68%)

Query: 600 VPFKNPDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWR 659
           VPFKNPDNV G+G+ PNNLVISWT MPEIEHNAP+F Y + W+R     AW  +++ DWR
Sbjct: 3   VPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWR 62

Query: 660 QSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGE 700
           Q+ +V+A+QPTF  Y IKVV      +   +  E++   GE
Sbjct: 63  QNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGE 103

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 3/103 (2%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           VP + P N    Q  +    V+SW P+           +   +W       +     +  
Sbjct: 3   VPFKNPDNVV-GQGTEPNNLVISWTPMPEIE-HNAPNFHYYVSWKRDIPAAAWENNNIFD 60

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPS-EIISFVTPE 501
                  +       K   +V+A N       + E +   + E
Sbjct: 61  WRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGE 103

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 17/94 (18%)

Query: 225 PKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTIL--------------ETG 270
            +  Y V    V         P  EV W   + ++     +                 +G
Sbjct: 2   SQQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 271 DLKITDVAFADSGEYTCFARNKLGTAQGSGSLTV 304
            L I ++  +D  EY   + N   T +    L V
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTMK--FFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 12/92 (13%)

Query: 132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR---------- 181
            + I       VTF   ++  P  E+ W      +++   +  R     +          
Sbjct: 2   SQQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 182 -ITIENLRKSDTGNYGCNATNSLGYVYKDVYV 212
            +TI NL  SD   Y   + N    +   +YV
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTMKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 10/93 (10%)

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRF--------VQSNDYS 365
            +        + TF   +       L          ++      F        + +   S
Sbjct: 2   SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 366 LTVTKSSELDSGQYTCRAQTELDFIEAQATLTV 398
           LT+   +  D  +Y   +    D    +  L V
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITD--TMKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 2/88 (2%)

Query: 27  SQNRHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYG 86
           SQ  +      VT      +  K+V            +    +          +   +  
Sbjct: 2   SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG- 60

Query: 87  KSLIIKHVEFSDQGSYTCEVSNGVGEAK 114
            SL I ++  SD+  Y  E  N     K
Sbjct: 61  -SLTIYNLTSSDEDEYEMESPNITDTMK 87

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-06
 Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 18/104 (17%)

Query: 219 PEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGG--------------- 262
           P I     +   VD G  + L C V G       W  N   +                  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 263 -RYTILETGDLKITDVAFADSG-EYTCFARNKLGTAQGSGSLTV 304
            +        L I+++        +TCFA+N  G       L  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 15/100 (15%)

Query: 126 PYFTVEP-EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQA-------------PP 171
           P       E +       +   C  +G      +W  NG  I +              P 
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 172 NPRRKVGPNRITIENLRKSDTG-NYGCNATNSLGYVYKDV 210
           N RR      + I  +        + C A N+ G     +
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI 101

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 15/99 (15%)

Query: 33  PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGK----- 87
           P       +        +++L C   G       W  +G  I+  D +   +Y       
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 88  ---------SLIIKHVEFSDQGS-YTCEVSNGVGEAKSY 116
                     L I  +E       +TC   N  G   +Y
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY 100

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 8e-04
 Identities = 16/103 (15%), Positives = 26/103 (25%), Gaps = 12/103 (11%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFE-----------SEPRF 358
           ++   E  EV+ G      CN     S      W       D                + 
Sbjct: 5   VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 64

Query: 359 VQSNDYSLTVTKSSELDSG-QYTCRAQTELDFIEAQATLTVQV 400
             +    L +++         +TC A+       A   L   V
Sbjct: 65  RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 107

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 6/98 (6%)

Query: 497 FVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL 556
           F T    P             ++  L+W  P      +  + +++   KG          
Sbjct: 4   FTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGN------GEF 57

Query: 557 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                 +    K+  L P+   +  L+     G    S
Sbjct: 58  CQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFS 95

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 6/109 (5%)

Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
           A+   T+    + P+   +          + W    P       + + ++     +G+G+
Sbjct: 1   AEIFTTLSCEPDIPNPPRIANR-TKNSLTLQWKA--PSDNGSKIQNFVLEWD---EGKGN 54

Query: 452 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 500
                   G     ++ K  PA     R+ A N       SE + + T 
Sbjct: 55  GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 103

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 14/85 (16%), Positives = 27/85 (31%)

Query: 655 VLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASK 714
           + +  ++ L L  +                 +G+G+        G     ++ K  PA  
Sbjct: 19  IANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMG 78

Query: 715 NFARVLAFNGAYNGPPSEIISFVTP 739
              R+ A N       SE + + T 
Sbjct: 79  CKFRLSARNDYGTSGFSEEVLYYTS 103

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 10/107 (9%), Positives = 25/107 (23%), Gaps = 11/107 (10%)

Query: 499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL-- 556
           +    PG   ++          +L W  P  P+G ++ Y                + +  
Sbjct: 3   SGSSGPGAPSTVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFM 61

Query: 557 --------PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
                            +               ++   + G G  ++
Sbjct: 62  RIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQ 108

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 25/140 (17%)

Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
                   ++ + +++ W              + +F++                      
Sbjct: 5   LLKFSYIRTSFDKILLRWE-PYWPPDFRDLLGFMLFYKEAPYQ----------------- 46

Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
             N   F   +     +WT  D +  +R             +    P ++    V     
Sbjct: 47  --NVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVT 104

Query: 725 A-----YNGPPSEIISFVTP 739
                   G  S+II   T 
Sbjct: 105 FSDERRTYGAKSDIIYVQTD 124

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 21/122 (17%), Positives = 32/122 (26%), Gaps = 26/122 (21%)

Query: 404 APSNFTLIQVIDAKKAVVSWNPVSPQS---LRGHFRGYKV-----------------QTW 443
               F+ I+     K ++ W P  P     L G    YK                   +W
Sbjct: 4   ELLKFSYIRT-SFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSW 62

Query: 444 TEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGA-----YNGPPSEIISFV 498
           T  D +  +R             +    P ++    V             G  S+II   
Sbjct: 63  TVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQ 122

Query: 499 TP 500
           T 
Sbjct: 123 TD 124

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 15/104 (14%), Positives = 25/104 (24%), Gaps = 19/104 (18%)

Query: 507 VQSLEAIPLGSSAFYLKWVKPE-QPNGVLMGYKIKYQSVKGTKVG--------------- 550
           +     I        L+W          L+G+ + Y+      V                
Sbjct: 5   LLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTV 64

Query: 551 ---PLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 591
                  R             + GL+P T+Y I +       D 
Sbjct: 65  VDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDE 108

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 55  CIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK 114
             +    + + I+ KDG  +              + I +    D G+Y C       + +
Sbjct: 23  HGWRNWDVYKVIYYKDGEALKYWYENHN------ISITNATVEDSGTYYCTGKVWQLDYE 76

Query: 115 SYSIDLSVLAAP 126
           S  ++++V+ AP
Sbjct: 77  SEPLNITVIKAP 88

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 16/102 (15%)

Query: 127 YFTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           +  ++       E + +   C         ++ +  +G+ +     N       + I+I 
Sbjct: 2   WLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN-------HNISIT 54

Query: 186 NLRKSDTGNYGCNATNSLGYVYKD-VYVNVLAHAPEITEAPK 226
           N    D+G Y C           + + + V+       +AP+
Sbjct: 55  NATVEDSGTYYCTGKVWQLDYESEPLNITVI-------KAPR 89

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           L AP N    +   ++K   +W P       G   GY+V+ W + D E       +   +
Sbjct: 2   LGAPQNPN-AKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEA---HLLDSK 52

Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
             + E+    P      +V A+     GP S ++S  T +
Sbjct: 53  VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQ 92

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/48 (20%), Positives = 19/48 (39%)

Query: 693 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 740
           E  +   +  + E+    P      +V A+     GP S ++S  T +
Sbjct: 45  EAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQ 92

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 9e-06
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 219 PEITEAPKDEYTVD-GKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDV 277
           P   E P+    V  G +  LTCR+  A +             G   +      L + + 
Sbjct: 3   PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNA 62

Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTV 304
           + + +G   C       T Q +  L V
Sbjct: 63  SLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 6/91 (6%)

Query: 126 PYFTVEPEF-INAAEEETVTFECK-ASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRIT 183
           P     PE  +  A   +    C+ A       + W      +     +       + +T
Sbjct: 3   PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTG----RSVLT 58

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           + N   S  G   C  +         V + V
Sbjct: 59  VRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
           P  ++ P +    + E VT  C  +   E       +             +   + + I 
Sbjct: 2   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFH--------NGSLSEETNSSLNIV 53

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
           N +  D+G Y C          + VY+ V 
Sbjct: 54  NAKFEDSGEYKCQHQQVNE--SEPVYLEVF 81

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 9/86 (10%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVA 278
           P+++  P       G+ V LTC      +       +         +      L I +  
Sbjct: 2   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNG-----SLSEETNSSLNIVNAK 56

Query: 279 FADSGEYTCFARNKLGTAQGSGSLTV 304
           F DSGEY C  +        S  + +
Sbjct: 57  FEDSGEYKCQHQQ----VNESEPVYL 78

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRI 182
           L      +EP++ +  E+++VT +C+ +  PE       +                 +  
Sbjct: 3   LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFH--------NESLISSQASSY 54

Query: 183 TIENLRKSDTGNYGCNATNSLG 204
            I+    +D+G Y C    S  
Sbjct: 55  FIDAATVNDSGEYRCQTNLSTL 76

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 9/86 (10%)

Query: 219 PEITEAPKDEYTVDGKTVVLTCRVFGAPKPEVNWIHNQKELTGGRYTILETGDLKITDVA 278
             +   P+    ++  +V L C+   +P+       + +          +     I    
Sbjct: 6   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNE-----SLISSQASSYFIDAAT 60

Query: 279 FADSGEYTCFARNKLGTAQGSGSLTV 304
             DSGEY C        +  S  + +
Sbjct: 61  VNDSGEYRCQTNL----STLSDPVQL 82

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 10/101 (9%), Positives = 25/101 (24%), Gaps = 4/101 (3%)

Query: 403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGES 462
           +     T  ++ +     + W      +           ++     E             
Sbjct: 6   DIVGPVT-HEIFENNVVHLMWQEPKEPN---GLIVLYEVSYRRYGDEELHLCDTRKHFAL 61

Query: 463 TTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGV 503
                 + +       R+ A + A NG  +E   F   + +
Sbjct: 62  ERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYL 102

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 8/61 (13%), Positives = 16/61 (26%)

Query: 680 QTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 739
            ++     E                   + +       R+ A + A NG  +E   F   
Sbjct: 40  VSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVT 99

Query: 740 E 740
           +
Sbjct: 100 D 100

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 17/73 (23%), Positives = 29/73 (39%)

Query: 54  FCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA 113
                        W  +   +  ++R++       L I  ++  D G Y CE+SN V   
Sbjct: 23  LTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR 82

Query: 114 KSYSIDLSVLAAP 126
           +S SI L ++  P
Sbjct: 83  RSNSIKLDIIFDP 95

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           L++P+       I A    V W             GY+++    +   G  RE  V    
Sbjct: 1   LDSPTGID-FSDITANSFTVHWIAPR-----ATITGYRIR-HHPEHFSGRPREDRVP-HS 52

Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPP 491
             +  +    P ++    ++A NG    P 
Sbjct: 53  RNSITLTNLTPGTEYVVSIVALNGREESPL 82

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
             ++   + +++F + W     P   + GY+I++     +               +  S 
Sbjct: 5   TGIDFSDITANSFTVHW---IAPRATITGYRIRHHPEHFSG-----RPREDRVPHSRNSI 56

Query: 568 KLAGLEPSTKYRIHLAGYTKAGDG 591
            L  L P T+Y + +       + 
Sbjct: 57  TLTNLTPGTEYVVSIVALNGREES 80

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           ++AP N  +     A    + W+           + YKV   T    +     +    G 
Sbjct: 1   IDAPKNLRVGSR-TATSLDLEWDNSE-----AEAQEYKVVYSTLAGEQYHEVLVPKGIGP 54

Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEI 494
           +T T +   VP ++    + A   +    P+ +
Sbjct: 55  TTKTTLTDLVPGTEYGVGISAVMNSKQSIPATM 87

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
           ++L      +++  L+W   +        YK+ Y ++ G +     E L       TT  
Sbjct: 5   KNLRVGSRTATSLDLEW---DNSEAEAQEYKVVYSTLAGEQYH---EVLVPKGIGPTTKT 58

Query: 568 KLAGLEPSTKYRIHLAGYTKAGDGAES 594
            L  L P T+Y + ++    +     +
Sbjct: 59  TLTDLVPGTEYGVGISAVMNSKQSIPA 85

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 2/101 (1%)

Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
           P+  P       ++      ++W   S    +            + +   + +    N  
Sbjct: 1   PMMPPVGVQ-ASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN-A 58

Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
            + +  V    P +     V+   G  +   S      T E
Sbjct: 59  TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFE 99

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 14/136 (10%), Positives = 26/136 (19%), Gaps = 41/136 (30%)

Query: 605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV 664
           P  V+    + + + I+W      +H           R      A  +    +      +
Sbjct: 5   PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 64

Query: 665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG 724
           +        YE                                           V+   G
Sbjct: 65  VTGLKPNTLYEF-----------------------------------------SVMVTKG 83

Query: 725 AYNGPPSEIISFVTPE 740
             +   S      T E
Sbjct: 84  RRSSTWSMTAHGTTFE 99

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
                 ++A  L      + W     P    +     Y     T +          ++ T
Sbjct: 2   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA--NTKYKNANAT 59

Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
           T S  + GL+P+T Y   +           S
Sbjct: 60  TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWS 90

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 5e-05
 Identities = 21/92 (22%), Positives = 33/92 (35%)

Query: 503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 562
           VP     L    + S+   L W +P + NG +  Y++ Y  V          +   + +P
Sbjct: 2   VPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNP 61

Query: 563 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                 +  L  S  YR  +     AG G E 
Sbjct: 62  KNRMLLIENLRESQPYRYTVKARNGAGWGPER 93

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWN-PVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
           VP   P       V+ +    +SW  P         +         +    G +++++V+
Sbjct: 2   VP-SEPGRLA-FNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD 59

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
             ++    ++    +      V A NGA  GP  E I  +  +
Sbjct: 60  NPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQ 102

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 10/90 (11%)

Query: 126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIE 185
               +EP++IN  +E++VT  C+ +  PE +     +   +      P            
Sbjct: 5   AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSY--------RF 56

Query: 186 NLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
               +D+G Y C    +       V++ VL
Sbjct: 57  KANNNDSGEYTCQTGQTSL--SDPVHLTVL 84

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 8e-05
 Identities = 14/106 (13%), Positives = 25/106 (23%), Gaps = 5/106 (4%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 548
           G             +PG     +   +  ++  L W                   ++   
Sbjct: 1   GSSGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTP-----GTLPASAYIIEAFS 55

Query: 549 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
                      +   TT   + GL P+T Y   +      G    S
Sbjct: 56  QSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPS 101

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 6/114 (5%)

Query: 392 AQATLTVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS 451
           +     +      PS   +  V       +SW P +P +L                   +
Sbjct: 6   SGKNYDLSDLPGPPSKPQVTDV-TKNSVTLSWQPGTPGTLPASAY----IIEAFSQSVSN 60

Query: 452 IRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFV-TPEGVP 504
             + + N  ++T   V    P +     V A N      PS +   V T +  P
Sbjct: 61  SWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 2/105 (1%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           VPL  P    + +V       + W+    +  R   +   ++   E++        ++  
Sbjct: 14  VPLSKPHPPVVGKV-THHSIELYWDLEQKEK-RQGPQEQWLRFSIEEEDPKMHSYGVIYT 71

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVP 504
           G +T   V+   P +    R+   + +     S ++S  T     
Sbjct: 72  GYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGES 462
           +       +    A  A V+W             G  V  +  + G       I   G  
Sbjct: 2   DQCKPPQ-VTCRSATCAQVNWEVP-------LSNGTDVTEYRLEWGGVEGSMQICYCGPG 53

Query: 463 TTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 500
            + E+    PA+  + RV A +    GP SE+++ VTP
Sbjct: 54  LSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP 91

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 6/69 (8%)

Query: 54  FCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA 113
              +   PL +  + ++G     S      +            S  G Y C  + G    
Sbjct: 22  CHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSI------PQANHSHSGDYHCTGNIGYTLY 75

Query: 114 KSYSIDLSV 122
            S  + ++V
Sbjct: 76  SSKPVTITV 84

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 221 ITEAPKDEYTVDGKTVVLTCRVF-GAPKPEVNWIHNQKELTGGRYTILETGDLKITDVAF 279
           + + P  E+   G+T+VL C  +   P  +V +  N K     R       +  I     
Sbjct: 4   VLQTPHLEFQE-GETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSD----PNFSIPQANH 58

Query: 280 ADSGEYTCFARNKLGTAQGSG-SLTVKE 306
           + SG+Y C              ++TV+ 
Sbjct: 59  SHSGDYHCTGNIGYTLYSSKPVTITVQA 86

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 16/98 (16%)

Query: 119 DLSVLAAPYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRKV 177
           +  VL  P+   +       E ET+   C +    P  ++ +  N         + +   
Sbjct: 1   EWLVLQTPHLEFQ-------EGETIVLRCHSWKDKPLVKVTFFQN-------GKSKKFSR 46

Query: 178 GPNRITIENLRKSDTGNYGCNATNSLGYVYKD-VYVNV 214
                +I     S +G+Y C             V + V
Sbjct: 47  SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITV 84

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNR-----I 182
             + P     +  E+  F C+ +G  + +     +      +P   R  V  N      +
Sbjct: 3   VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 62

Query: 183 TIENLRKSDTGNYGCNATNSLGYVYKD-VYVNV 214
           TI N    D G Y C  T   G   +  V V +
Sbjct: 63  TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAVSD---PSLKLSIVWLRGSEPIDFESEPRFVQSNDYSL 366
           +   P   E+  G+S  F C    D     +           P        +   +  +L
Sbjct: 3   VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 62

Query: 367 TVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
           T+  ++  D+G Y C    E    +++AT+ V++
Sbjct: 63  TIYNANIDDAGIYKCVVTAEDGT-QSEATVNVKI 95

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 220 EITEAPKDEYTVDGKTVVLTCRV-FGAPKPEVNWIHNQKELTGG-------RYTILETGD 271
           ++   P       G++    C+V   A   +++W     E            +   ++  
Sbjct: 2   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 61

Query: 272 LKITDVAFADSGEYTCFARNKLGTAQGSGSLTVKEH 307
           L I +    D+G Y C    + GT     ++ VK  
Sbjct: 62  LTIYNANIDDAGIYKCVVTAEDGTQS-EATVNVKIF 96

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 223 EAPKDEYTVDGKTVVLTCRVFGAPKPEVNWI-HNQKELTGGRYTILETGDLKITDVAFAD 281
            + +  +   G T  L C              +   +    +Y ++   +L I +++  D
Sbjct: 2   GSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGD 61

Query: 282 SGEYTCFARNKLGTAQGSGSLTV 304
           SG Y C +  ++        +  
Sbjct: 62  SGVYQCLSEERVKNKTVFQVVAK 84

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 314 PEDYEVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYSLTVTKSSE 373
              +  + G +A  +C+  S+ +     V+ +    +     P++      +L +   SE
Sbjct: 4   YRQHFFKHGGTAELKCSQKSNLA----RVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSE 59

Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQV 400
            DSG Y C ++  +        +   V
Sbjct: 60  GDSGVYQCLSEERVKNKTVFQVVAKHV 86

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 567
           + LE +    ++  + W   + P   +  Y+I Y    G           +    + ++A
Sbjct: 1   RDLEVVAATPTSLLISW---DAPAVTVRYYRITYGETGGNS-----PVQEFTVPGSKSTA 52

Query: 568 KLAGLEPSTKYRIHLAGYTKAGDGAES 594
            ++GL+P   Y I +   T  GD   S
Sbjct: 53  TISGLKPGVDYTITVYAVTGRGDSPAS 79

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
           P TV  +  +     +  L W +PEQPNG+++ Y+I+Y   +        E    ++   
Sbjct: 1   PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHN------EFNSSMARSQ 54

Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
           T +A++ GL P   Y + +   T AG G  S 
Sbjct: 55  TNTARIDGLRPGMVYVVQVRARTVAGYGKFSG 86

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 4/109 (3%)

Query: 400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNK 459
           V    P N + +   +   +++     +P         Y +Q  T+     S        
Sbjct: 3   VKPNPPHNLS-VINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA 61

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSE---IISFVTPEGVPG 505
              ++  V    P ++   R+        G  S+     S +T E  P 
Sbjct: 62  STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPS 110

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGEST 463
           AP++      +        W P                  T K+  G ++E+ +   +S+
Sbjct: 2   APTDLK-FTQVTPTSLSAQWTP------PNVQLTGYRVRVTPKEKTGPMKEINLA-PDSS 53

Query: 464 TTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE 501
           +  V   + A+K    V A        P++     T E
Sbjct: 54  SVVVSGLMVATKYEVSVYALKDTLTSRPAQ-GVVTTLE 90

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 29/116 (25%)

Query: 129 TVEPEFINAAEEETVTFECKASGLPEP----EIHW----------------VHNGKPISQ 168
           T   E I  A+ ET    CK +  PE     +I W                    K    
Sbjct: 8   TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDD 67

Query: 169 APPNPRRKVGPNR---------ITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL 215
             P+ + +V             I + NL+ SD G Y C    + G   K +++ VL
Sbjct: 68  YYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 25/129 (19%), Positives = 37/129 (28%), Gaps = 33/129 (25%)

Query: 299 SGSLTVKEHTHITDQPEDYEVEAGQSATFRCNA--VSDPSLKLSIVWLRGSEPIDFES-- 354
           + SL++      T   E  E   G++A   C      +    L I WL            
Sbjct: 2   ARSLSI------TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQV 55

Query: 355 -------------EPRF----------VQSNDYSLTVTKSSELDSGQYTCRAQTELDFIE 391
                         P            ++S D S+ VT     D G Y C+ +       
Sbjct: 56  IILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVAN 115

Query: 392 AQATLTVQV 400
            +  L V V
Sbjct: 116 KKIHLVVLV 124

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 32/122 (26%)

Query: 215 LAHAPEITEAPKDEYTVDGKTVVLTCRVFGAPKP----EVNWIHNQKELTGGRYTIL--- 267
            A +  IT   +      G+T  L C+   +P+     ++ W+ +  +       I+   
Sbjct: 1   FARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYS 60

Query: 268 -------------------------ETGDLKITDVAFADSGEYTCFARNKLGTAQGSGSL 302
                                        + +T++  +D G Y C  +   G A     L
Sbjct: 61  GDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 120

Query: 303 TV 304
            V
Sbjct: 121 VV 122

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 22/97 (22%), Positives = 30/97 (30%)

Query: 403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGES 462
            AP N T+   +     +   NP  P +   +   Y V  W+E D        +     S
Sbjct: 3   RAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPS 62

Query: 463 TTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
                          ARV A+  AYN   SE      
Sbjct: 63  LRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTK 99

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 4/104 (3%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
           T       P   ++   I +    ++W+P                     +G    +  +
Sbjct: 6   TCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDN----GGATINKYVVEMAEGSNGNKWEM 61

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 500
           +  G +     D+  P      RV   +       SE +   TP
Sbjct: 62  IYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP 105

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 394 ATLTVQVPLEAPSNFTL-IQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSI 452
           A L V+    AP +    +  ++ +   ++W         G+    +      ++     
Sbjct: 3   AHLRVRQLPHAPEHPVATLSTVERRAINLTWTK----PFDGNSPLIRYILEMSENNAPWT 58

Query: 453 RELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT-PE 501
             L     ++T+  V   VPA     R+ A N    G  S+    V+ PE
Sbjct: 59  VLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 108

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 24/104 (23%), Positives = 32/104 (30%), Gaps = 6/104 (5%)

Query: 492 SEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGP 551
           S  +        P          +   A  L W KP   N  L+ Y ++           
Sbjct: 2   SAHLRVRQLPHAPEHPV-ATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPW--- 57

Query: 552 LLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
               L    DP  TS  + GL P+  Y+  L      G G  SK
Sbjct: 58  --TVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSK 99

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 3/102 (2%)

Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
           P EAP   T+          V+W P    +     + ++V+    K     I        
Sbjct: 10  PPEAPDRPTISTA-SETSVYVTWIP--RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPP 66

Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 502
              + E+           RV A N      PS         G
Sbjct: 67  SRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 108

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 3/91 (3%)

Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
           P             ++ Y+ W+        +  ++++Y+ +K                P+
Sbjct: 11  PEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDW---ILATSAIPPS 67

Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
             S ++ GLE    Y+  +      G+   S
Sbjct: 68  RLSVEITGLEKGISYKFRVRALNMLGESEPS 98

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 220 EITEAPKDEYTVD-GKTVVLTCRVFGAPKPE-VNWIHNQKELTGGRYTILETGDLKITDV 277
           +I   P+  Y    G +V LTC   G   P           L G       T  L +  V
Sbjct: 2   KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61

Query: 278 AFADSGEYTCFARNKLGTAQGSGSLTV 304
           +F +   Y C A  +    +    + +
Sbjct: 62  SFGNEHSYLCTATCESRKLEKGIQVEI 88

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 14/110 (12%), Positives = 23/110 (20%), Gaps = 1/110 (0%)

Query: 399 QVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN 458
             P   P + T+   +      VSW P                      G+     +   
Sbjct: 8   AGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFPT 67

Query: 459 KGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQ 508
              +    V            V   +       S + +      VP T  
Sbjct: 68  ADSTAVELVR-LRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTPH 116

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 10/96 (10%)

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           L++P +  +          + W          H+R     +             +    +
Sbjct: 1   LDSPRDLMVTAS-SETSISLIWTK--ASGPIDHYRITFTPSSGISS-------EVTVPRD 50

Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF 497
            T+  +    P ++    + A  G      S + +F
Sbjct: 51  RTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAF 86

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS------LTVTKS 371
           E  A    +  C         +++ W    +P +     + +   D S      L V KS
Sbjct: 14  EQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKS 73

Query: 372 SELDSGQYTCRAQTE 386
           +      +TC    E
Sbjct: 74  NWEAGNTFTCSVLHE 88

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 6/92 (6%)

Query: 217 HAPEITEAPKDEYTVDGKTVVLTCRVFGA-PKPEVNWIHNQKELTGGRYTILETGDLKIT 275
           H   +          +   + L C  +      +V ++ N K+     +         I 
Sbjct: 1   HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFH----IP 56

Query: 276 DVAFADSGEYTCFARNKLGTAQ-GSGSLTVKE 306
                DSG Y C            + ++T+ +
Sbjct: 57  KATLKDSGSYFCRGLVGSKNVSSETVNITITQ 88

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 54  FCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA 113
              +  T L +  + ++G         S  +      I      D GSY C    G    
Sbjct: 24  CHSWKNTALHKVTYLQNGKDRKYFHHNSDFH------IPKATLKDSGSYFCRGLVGSKNV 77

Query: 114 KSYSIDLSVLAA 125
            S ++++++  A
Sbjct: 78  SSETVNITITQA 89

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 5/91 (5%)

Query: 504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 563
           P    S      G +   L+W KP           I     + +  G          D  
Sbjct: 1   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGF-----KPKYDGE 55

Query: 564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAES 594
             +  +  L  STKY+  +  Y   G    S
Sbjct: 56  DLAYTVKNLRRSTKYKFKVIAYNSEGKSNPS 86

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 23/103 (22%), Positives = 30/103 (29%), Gaps = 7/103 (6%)

Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRG-HFRGYKVQTWTEKDGEGSIRELIVNK 459
           P        L     AK+  + W P  P    G     Y V+    +  E         +
Sbjct: 1   PPGPCLPPRLQGRPKAKEIQLRWGP--PLVDGGSPISCYSVEMSPIEKDEPREV----YQ 54

Query: 460 GESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG 502
           G      V   +P      R+ A N    GP SE     T  G
Sbjct: 55  GSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 97

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 9/98 (9%)

Query: 402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGE 461
           ++ P+    ++ +    A V W P      R       +  +    GEG      +    
Sbjct: 4   IDGPTQIL-VRDVSDTVAFVEWTPP-----RAKVDFI-LLKYGLVGGEGGKTTFRLQ-PP 55

Query: 462 STTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT 499
            +   V    P S+    + A  G      S    F T
Sbjct: 56  LSQYSVQALRPGSRYEVSISAVRGTNESDASS-TQFTT 92

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 17/108 (15%), Positives = 25/108 (23%), Gaps = 22/108 (20%)

Query: 129 TVEPEFINAAEEETVTFECKASGLPE-PEIHWVHNGKPISQAPPNPRRKVGPNRIT---- 183
           T+E      AE+  V        LP        + G   +      R     N       
Sbjct: 3   TIEAVPPQVAEDNNVLLLV--HNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60

Query: 184 --------------IENLRKSDTGNYGCNATNSLGYVYKDVYVNVLAH 217
                          + +   D G Y  + T+   Y      V    H
Sbjct: 61  YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDE-NYRRTQATVRFHVH 107

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 25/116 (21%)

Query: 310 ITDQPEDYEVEAGQSATFRCNAV--SDPSLKLSIVWLR--------------------GS 347
           +     +     G   T  C+       S  +S  W                        
Sbjct: 2   VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 61

Query: 348 EPIDFESEPRFVQS---NDYSLTVTKSSELDSGQYTCRAQTELDFIEAQATLTVQV 400
           E   F+   ++V      D S+ +      D+G +TC  +   D +   + +T+ V
Sbjct: 62  EVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 70  DGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY----SIDLSVLA 124
           D V      R S  +   +L + +++  D+G Y C + +            + +LSVLA
Sbjct: 52  DSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVLA 110

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 5/71 (7%)

Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS----LTVTKSSE 373
              A  + T  C         +++ W  G+      +    +QS  Y+     TV  S  
Sbjct: 16  ATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVA-SGT 74

Query: 374 LDSGQYTCRAQ 384
             S   TC   
Sbjct: 75  WPSASVTCLVA 85

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPIS----QAPPNPRRKVGPNRIT 183
           ++  PE I+  E   +   C+ +               +     +   + R+        
Sbjct: 8   YSEIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKG-----FI 62

Query: 184 IENLRKSDTGNYGCNATNSLGYVYKDVYVNV 214
           I N    + G   C AT + G++YK  Y+  
Sbjct: 63  ISNATYKEIGLLTCEATVN-GHLYKTNYLTH 92

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 2/109 (1%)

Query: 397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI 456
           T     + P+    +++ D     V  +  +P           +  + +   +  +    
Sbjct: 9   TPAPVYDVPNPPFDLELTDQLDKSVQLS-WTPGDDNNSPITKFIIEYEDAMHKPGLWHHQ 67

Query: 457 VNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEII-SFVTPEGVP 504
                + TT      P      RV+A N      PSE    ++T    P
Sbjct: 68  TEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEP 116

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 20/121 (16%), Positives = 30/121 (24%), Gaps = 10/121 (8%)

Query: 498 VTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP 557
                VP     LE       +  L W   +  N  +  + I+Y+               
Sbjct: 11  APVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPG----LWHH 66

Query: 558 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV------PFKNPDNVEGR 611
                 T +     L P   Y   +      G    S+           P KNP +    
Sbjct: 67  QTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPSS 126

Query: 612 G 612
           G
Sbjct: 127 G 127

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 15/110 (13%), Positives = 26/110 (23%), Gaps = 12/110 (10%)

Query: 122 VLAAPYFTVEPEFINAAEEETVTFECKASGLP-EPEIHWVHNGKPISQAPP-----NPRR 175
           ++A+P  T E       E      +C       +P I W                     
Sbjct: 2   LIASPAKTHEK---TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRIT 58

Query: 176 KVGPNRITIENLRKS---DTGNYGCNATNSLGYVYKDVYVNVLAHAPEIT 222
                 +    + K    D   Y C A N+       +    +    +  
Sbjct: 59  AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDN 108

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 489 GPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVK--PEQPNGVLMGYKIKYQSVKG 546
              S  ++  T +  P             +   L W +    +    + GYK+ Y++   
Sbjct: 3   SGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQ 62

Query: 547 TKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESK 595
             V  L                         Y I +   T  GDG  S+
Sbjct: 63  NNVQVLNTNKTSAELVLP---------IKEDYIIEVKATTDGGDGTSSE 102

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 318 EVEAGQSATFRCNAVSDPSLKLSIVWLRGSEPIDFESEPRFVQSNDYS----LTVTKSSE 373
              +G S T  C         +++ W  GS      + P  +QS+ Y+    +TVT SS 
Sbjct: 16  GDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVT-SST 74

Query: 374 LDSGQYTCRAQTELDFIEAQATLTVQVPLEAP 405
             S   TC          +   +  ++    P
Sbjct: 75  WPSQSITCNVAHP----ASSTKVDKKIEPRGP 102

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 17/99 (17%)

Query: 319 VEAGQSATFRCNAVSDPSLKLSIVWLRGSEP--------------IDFESEPRFVQSNDY 364
            E  + AT  C                  E                ++++   F  +N+ 
Sbjct: 6   KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65

Query: 365 SLTVTKSSELDSGQYTCRAQTELDF---IEAQATLTVQV 400
           S+ +      D G Y C            E  A +T+ V
Sbjct: 66  SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSV 104

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 81  SQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSY----SIDLSV 122
              N   S++I  +  SD+G+Y C V     +A        + LSV
Sbjct: 61  ITNNL--SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSV 104

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 2/67 (2%)

Query: 43  EVALRNKKVELFC-IFGGTPLPQTI-WSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG 100
            V +      + C +    P    I              I     GK   +K  ++ D  
Sbjct: 8   SVFVMKNGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSN 67

Query: 101 SYTCEVS 107
           S TC V 
Sbjct: 68  SVTCSVQ 74

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 7/100 (7%)

Query: 401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKG 460
           PL  P+N  L    D     VSW   +         GY++ T      +G+  E +V+  
Sbjct: 1   PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVVHAD 56

Query: 461 ESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP 500
           +S+ T  D   P  +    V          P      + P
Sbjct: 57  QSSCT-FDNLSPGLEYNVSVYTVKDDKESVPISDT--IIP 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	745
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.64
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.64
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.64
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.61
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.6
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.6
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.6
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.6
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.59
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.59
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.58
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.58
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.58
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.58
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.58
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.57
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.57
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.56
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.56
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.56
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.56
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.55
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.54
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.54
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.54
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.54
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.54
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.54
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.53
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.53
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.52
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.52
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.52
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.52
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.52
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.52
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.52
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.52
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.52
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.51
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.51
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.5
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.5
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.49
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.49
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.49
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.49
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.48
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.48
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.48
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.48
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.47
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.47
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.47
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.47
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.46
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.46
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.46
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.46
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.46
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.46
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.46
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.45
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.44
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.44
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.44
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.44
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.43
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.43
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.43
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.43
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.41
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.41
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.41
d2avga1	110	Cardiac myosin binding protein C, different domain	99.4
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.4
d2avga1	110	Cardiac myosin binding protein C, different domain	99.39
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.39
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.39
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.39
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.39
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.39
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.38
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.37
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.37
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.36
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.36
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.36
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.36
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.36
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.35
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.35
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.35
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.34
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.34
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.34
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.34
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.33
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.33
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.33
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.33
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.32
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.32
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.32
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.32
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.31
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.31
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.31
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.31
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.31
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.31
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.31
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.31
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.31
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.31
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.31
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.31
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.31
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.3
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.3
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.3
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.3
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.3
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.3
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.3
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.3
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.29
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.29
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.28
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.28
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.28
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.28
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.28
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.28
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.28
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.28
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.28
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.27
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	99.27
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.27
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.27
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.27
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.26
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.26
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.26
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.26
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.25
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.25
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.25
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.25
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.25
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.25
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.25
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.25
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.25
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.24
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.24
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.24
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.24
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.24
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.24
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.24
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.24
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.23
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.23
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.23
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.23
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.23
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.22
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.22
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.22
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.21
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.21
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.21
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.19
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.19
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.19
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.19
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.19
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.19
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.19
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.18
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.18
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	99.18
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	99.18
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.18
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.18
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.18
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.17
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.17
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.16
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.16
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.15
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.15
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.15
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.14
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.14
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.14
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.14
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	99.13
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.12
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.12
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.11
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.1
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.1
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	99.09
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.08
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.08
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.08
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	99.07
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.07
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.07
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.07
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.06
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.05
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.05
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.04
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.0
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.0
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.0
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	98.99
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	98.99
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.99
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.98
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.98
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.98
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.97
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	98.97
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	98.97
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.96
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	98.96
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.95
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	98.95
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.95
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.93
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.93
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.93
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.93
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.92
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.91
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.91
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.9
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.89
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.87
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.85
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.84
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	98.84
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.83
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.83
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.81
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.8
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.78
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.78
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.72
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.69
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.64
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.57
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.55
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.54
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.54
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.53
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.51
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.49
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.45
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.39
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.39
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.38
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.38
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.37
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.37
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.34
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.32
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.32
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.31
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.3
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.3
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.28
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.28
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.27
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.26
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.25
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.25
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.23
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.23
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.22
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.22
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.22
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.21
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.2
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.19
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.18
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.17
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.16
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.16
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.16
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.15
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.14
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.14
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.13
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.13
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.13
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.12
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.11
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.11
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.1
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.1
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.1
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.1
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.09
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.07
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.07
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.07
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.07
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.07
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.06
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.06
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.05
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.05
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.04
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.03
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.03
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.02
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.02
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.02
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.01
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.01
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.01
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.01
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.0
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.0
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.99
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.98
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.98
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.98
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.98
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.97
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.97
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.97
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.97
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.96
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.96
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.96
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.96
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.96
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.96
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.95
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.95
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.95
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.95
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.94
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.93
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.93
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.93
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.93
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.93
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.92
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.92
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.91
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.91
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.9
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.89
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.89
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.89
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.89
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.88
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.88
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.88
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.87
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.87
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.87
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.86
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.86
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.86
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.85
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.84
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.84
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.84
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.83
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.83
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.83
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.83
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.83
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.81
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.81
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.81
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.8
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.8
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.79
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.78
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.78
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.78
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.77
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.77
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.77
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.77
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.77
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.77
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.77
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.76
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.76
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.76
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.76
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.76
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.75
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.75
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.75
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.74
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.74
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.73
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.73
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.73
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.73
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.73
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.73
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.72
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.72
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.71
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.71
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.7
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.7
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.7
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.69
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.69
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.68
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.68
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.68
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.67
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.67
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.67
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.66
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.66
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.66
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.66
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.66
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.65
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.65
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.64
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.64
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.64
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.64
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.64
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.64
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.63
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.63
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.63
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.63
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.63

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-17  Score=136.08  Aligned_cols=112  Identities=24%  Similarity=0.402  Sum_probs=94.3

Q ss_pred             CCCCCCCCc-ceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCC
Q psy11701        485 GAYNGPPSE-IISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT  563 (745)
Q Consensus       485 ~~G~g~~S~-~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~  563 (745)
                      +.|.|.++. ++.++|.+++|++|.++.+...+.++|.|+|++|.+.+|+|.+|.|+|+..+.........    +....
T Consensus         1 ~~G~G~pss~~v~~~T~~~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~~~~~~~~~~----~~~~~   76 (117)
T d1wfoa1           1 RIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVE----VLAPS   76 (117)
T ss_dssp             CCCCCCCCCCCSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCSCCCEE----EECTT
T ss_pred             CccCCCCCCCCEEEECCCCCCcCCCCcEEEEecCCEEEEEEECCCCCCCceEEEeeeeeeccCCCceEeEE----ecCCc
Confidence            368887764 6778899999999999999999999999999999888899999999998876654433322    22567


Q ss_pred             cceeeecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        564 TTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       564 ~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      ..+|+|.+|.|++.|.|+|.|+|.+|.|++|+.+...
T Consensus        77 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~t  113 (117)
T d1wfoa1          77 ARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVT  113 (117)
T ss_dssp             CCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             eEEEEECCCCCCCEEEEEEEEECCCcCCCCcCCEEEE
Confidence            7899999999999999999999999999998766444

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=1.1e-15  Score=116.90  Aligned_cols=86  Identities=26%  Similarity=0.449  Sum_probs=77.3

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      .|+..+.+..+.+|+++.|.|.+.|.|.|+++|+|||.+|....++.+.  ++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus         3 ~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   80 (89)
T d1cs6a4           3 DWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS--GGELRFSKLVLEDSGMYQCVAENKHGTVY   80 (89)
T ss_dssp             EEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE--TTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee--eeeEEEEeecccCCEEEEEEEEeCCCEEE
Confidence            4678889999999999999999999999999999999999988887764  45799999999999999999999999876


Q ss_pred             EEEEEEEEE
Q psy11701        115 SYSIDLSVL  123 (745)
Q Consensus       115 ~~~~~l~V~  123 (745)
                       ..+.|.|.
T Consensus        81 -~~~~l~V~   88 (89)
T d1cs6a4          81 -ASAELTVQ   88 (89)
T ss_dssp             -EEEEEEEE
T ss_pred             -EEEEEEEE
Confidence             56888875

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=1.3e-15  Score=116.54  Aligned_cols=87  Identities=28%  Similarity=0.518  Sum_probs=79.3

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      |.|...+.+..+.+|+++.|.|.+.|.|.+.++|+|||..+...   .+....++.|.|.++..+|+|.|+|.|.|..|.
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   78 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ---NRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT   78 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC---SSEEEETTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccc---ceeeeeeeeEEEEeecccCCEEEEEEEEeCCCE
Confidence            77888999999999999999999999999999999999999743   356667889999999999999999999999999


Q ss_pred             EEEEEEEEEe
Q psy11701        206 VYKDVYVNVL  215 (745)
Q Consensus       206 ~~~~~~l~v~  215 (745)
                      ....+.|.|.
T Consensus        79 ~~~~~~l~V~   88 (89)
T d1cs6a4          79 VYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9888888885

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=5.3e-16  Score=121.49  Aligned_cols=90  Identities=18%  Similarity=0.263  Sum_probs=75.3

Q ss_pred             CCCCCCceeEEEcCCceEEEEeeCCCCCC-CceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPN-GVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       503 ~P~~p~~~~~~~~~~~~i~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      +|++|.++.+...+.++|+|+|++|.+.+ ++|++|.|+|+..+...|.....     .....+.|++.+|.+++.|.|+
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~-----~~~~~~~~~v~~L~~~~~Y~fr   75 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANK-----EPVERCGFTVKDLPTGARILFR   75 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSS-----SCBSSSEEEEECCCTTCCEEEE
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeee-----ecCceeEEEECCCcCCeEEEEE
Confidence            58899999999999999999999987654 58999999999987765543321     1445688999999999999999


Q ss_pred             EEEEecCCCCCCccee
Q psy11701        582 LAGYTKAGDGAESKYL  597 (745)
Q Consensus       582 V~a~n~~G~g~~S~~~  597 (745)
                      |.|+|.+|.|++|...
T Consensus        76 V~A~n~~G~s~~s~~~   91 (98)
T d1x5ya1          76 VVGVNIAGRSEPATLL   91 (98)
T ss_dssp             EEEEETTEECCCCCCS
T ss_pred             EEEECCCcCCCCcCCC
Confidence            9999999999987543

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.9e-16  Score=124.95  Aligned_cols=98  Identities=28%  Similarity=0.424  Sum_probs=83.4

Q ss_pred             eEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCC
Q psy11701        495 ISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP  574 (745)
Q Consensus       495 ~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p  574 (745)
                      +.++|.++.|++|.++++...+.++|.|+|++|.+.+|.|.+|.|+|+..+........     .......+|.|.+|.|
T Consensus         2 v~v~T~e~vP~~p~~l~~~~~~~~sv~l~W~~P~~~ng~i~~Y~i~~~~~~~~~~~~~~-----~~~~~~~~~~i~~L~p   76 (106)
T d1wfna1           2 QLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTH-----YLPNVTLEYRVTGLTA   76 (106)
T ss_dssp             CSCCSSCCSCCCCSCCEEESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGGGCCCE-----EECSSCCEEEEESCCT
T ss_pred             EEEEcCCCCCcCCCCcEEEEecCCEEEEEEECCCCCCCcEEeEEEEEEECCCCcceEEE-----ecCCCeeEEEEccCCC
Confidence            44788999999999999999999999999999998889999999999987654332221     1255668999999999


Q ss_pred             CccEEEEEEEEecCCCCCCccee
Q psy11701        575 STKYRIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       575 ~t~Y~~~V~a~n~~G~g~~S~~~  597 (745)
                      ++.|.|+|.|+|..|.|++|...
T Consensus        77 ~t~Y~~~V~A~n~~G~g~~s~~~   99 (106)
T d1wfna1          77 LTTYTIEVAAMTSKGQGQVSAST   99 (106)
T ss_dssp             TCEEEEEEEEECSSCEEEEEEEE
T ss_pred             CCEEEEEEEEECCCCCcCCcCCE
Confidence            99999999999999999998654

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.61  E-value=2.1e-15  Score=115.52  Aligned_cols=86  Identities=28%  Similarity=0.531  Sum_probs=70.8

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      |.....+++...+.+|+++.|.|.+.|.|.|+++|+|||.+|.. .++...  +..|.|.+++.+|+|.|+|.|.|..|.
T Consensus         3 P~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~-~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~   79 (89)
T d1biha4           3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-GRATVT--DSGLVIKGVKNGDKGYYGCRATNEHGD   79 (89)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS-SSEEEE--TTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             CeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc-ccEEEe--eeeEEECCCChhhCEEEEEEEEECCCE
Confidence            45444444556789999999999999999999999999999974 455543  346999999999999999999999998


Q ss_pred             eEEEEEEEEE
Q psy11701        113 AKSYSIDLSV  122 (745)
Q Consensus       113 ~~~~~~~l~V  122 (745)
                      .. ..+.|.|
T Consensus        80 ~~-~~~~l~V   88 (89)
T d1biha4          80 KY-FETLVQV   88 (89)
T ss_dssp             EE-EEEEEEE
T ss_pred             EE-EEEEEEE
Confidence            76 5677766

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.60  E-value=1.9e-15  Score=116.48  Aligned_cols=89  Identities=28%  Similarity=0.403  Sum_probs=73.9

Q ss_pred             CCCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      +.+|.+....|.+..+.+|++++|.|.+.|.|.|.+.|+|++..+...    ....+++|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           2 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             CEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC----CSBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             ccCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE----eeeeeeEEEeCCCCccCCEEEEEEEEEC
Confidence            456777666789999999999999999999999999999976544321    2234568999999999999999999999


Q ss_pred             CeeeEEEEEEEEEE
Q psy11701        110 VGEAKSYSIDLSVL  123 (745)
Q Consensus       110 ~g~~~~~~~~l~V~  123 (745)
                      .|... ..+.|.|.
T Consensus        78 ~G~~~-~~~~l~V~   90 (91)
T d1cs6a3          78 KGRDT-YQGRIIIH   90 (91)
T ss_dssp             TEEEE-EEEEEEEE
T ss_pred             CCEEE-EEEEEEEE
Confidence            99876 66888775

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.6e-15  Score=119.23  Aligned_cols=92  Identities=24%  Similarity=0.429  Sum_probs=78.5

Q ss_pred             CCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        501 EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       501 ~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      ...|++|.++++...+.++|.|+|++|...+|+|.+|.|+|+..+...+...        .....++.|.+|.|++.|.|
T Consensus         8 ~~vP~~P~~l~v~~~s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~~~~~~~~--------~~~~~~~~i~~L~p~t~Y~~   79 (103)
T d1x5ga1           8 VQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDV--------DVSSHSYTINGLKKYTEYSF   79 (103)
T ss_dssp             SSCCCCCSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTCCCCCCE--------EECSSEEEECSCCTTCEEEE
T ss_pred             CCCcccCCCcEEEEccCCEEEEEEECCcCCCccEEEEEEEEEeCCCceeEEE--------eccccEEecCCCCCCCEEEE
Confidence            3678999999999999999999999999888999999999998766543322        23457899999999999999


Q ss_pred             EEEEEecCCCCCCcceeeec
Q psy11701        581 HLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       581 ~V~a~n~~G~g~~S~~~~~~  600 (745)
                      +|.|+|..|.|++|..+...
T Consensus        80 ~V~A~n~~G~g~~S~~v~v~   99 (103)
T d1x5ga1          80 RVVAYNKHGPGVSTPDVAVR   99 (103)
T ss_dssp             EEEEECSSCCCCBCCCCCEE
T ss_pred             EEEEEcCCcCcCCCCCEEEE
Confidence            99999999999998766443

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.3e-15  Score=116.90  Aligned_cols=87  Identities=9%  Similarity=0.240  Sum_probs=74.8

Q ss_pred             CCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      |++|.++.+...+.++|.|+|++|.+++++|.+|.|+|+..++.......     + ....+++.+.+|.|++.|+|+|.
T Consensus         1 P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~~~~~~~~~-----~-~~~~~~~~i~~L~p~t~Y~~~V~   74 (93)
T d2vkwa2           1 PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIR-----L-PSGSDHVMLKSLDWNAEYEVYVV   74 (93)
T ss_dssp             CCCCEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTSCCCCCEE-----E-CTTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCccCEeEEcCCCEEEEEeeCCCCCcCceEEEEEEeeecCcceeeeee-----c-cCCceEEEEeccccceEEEEEEE
Confidence            78899999999999999999999998888999999999987765332221     2 45678999999999999999999


Q ss_pred             EEecCCCCCCcce
Q psy11701        584 GYTKAGDGAESKY  596 (745)
Q Consensus       584 a~n~~G~g~~S~~  596 (745)
                      |+|..|.|.+|..
T Consensus        75 A~N~~G~s~ps~~   87 (93)
T d2vkwa2          75 AENQQGKSKAAHF   87 (93)
T ss_dssp             EEETTEECCCEEE
T ss_pred             EEcCCCCcCCEeE
Confidence            9999999999754

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=119.16  Aligned_cols=95  Identities=29%  Similarity=0.486  Sum_probs=80.4

Q ss_pred             CCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        501 EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       501 ~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      +++|++|..+++...+.++|.|+|++|.+.+|+|.+|.|+|+..+........     + .....+++|.+|.|++.|.|
T Consensus         1 qa~P~~p~~~~~~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~-----~-~~~~~~~~i~~L~p~t~Y~~   74 (98)
T d1x5la1           1 QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYST-----L-KAVTTRATVSGLKPGTRYVF   74 (98)
T ss_dssp             CCCCCCCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCSSCEE-----E-EESSSEEEECSCCTTCEEEE
T ss_pred             CcCCCCCCceEEEeccCCEEEEEEECCCCCCCCEEEEEEEeecccccceeeEE-----e-cCCceEEEECCCCCCCEEEE
Confidence            36789999999999999999999999998889999999999987654333222     1 34568999999999999999


Q ss_pred             EEEEEecCCCCCCcceeeecc
Q psy11701        581 HLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       581 ~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      +|.|+|.+|.|++|..+.+.+
T Consensus        75 ~V~a~n~~G~g~~S~~v~~~T   95 (98)
T d1x5la1          75 QVRARTSAGCGRFSQAMEVET   95 (98)
T ss_dssp             CEEEEETTEECCCCCCEEEEC
T ss_pred             EEEEEcCCCCcCCCCCEEEEc
Confidence            999999999999998776554

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.59  E-value=3e-15  Score=117.16  Aligned_cols=90  Identities=21%  Similarity=0.299  Sum_probs=77.5

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      .|+..|.+..+.+|+++.|.|.+.|.|.|+|.|+||+.+|..+.++.+...+  ..|.|.+++.+|+|.|+|.|.|..|.
T Consensus         3 ~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   82 (97)
T d1koaa1           3 RFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGT   82 (97)
T ss_dssp             EEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEE
T ss_pred             EEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCE
Confidence            3567789999999999999999999999999999999999887776554333  47999999999999999999999998


Q ss_pred             eEEEEEEEEEEec
Q psy11701        113 AKSYSIDLSVLAA  125 (745)
Q Consensus       113 ~~~~~~~l~V~~~  125 (745)
                      .. ..+.|.|...
T Consensus        83 ~~-~~~~l~V~~~   94 (97)
T d1koaa1          83 KE-EIVFLNVTRH   94 (97)
T ss_dssp             EE-EEECCEEECS
T ss_pred             EE-EEEEEEEeec
Confidence            76 6688888654

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.59  E-value=7.8e-15  Score=116.00  Aligned_cols=90  Identities=27%  Similarity=0.367  Sum_probs=78.2

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cC-CcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NY-GKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~-~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      ++.|...+.+..+.+|+++.|.|.+.|.|.|++.|+|||.+|..+.++.+.  .. ..+|.|.+++.+|.|.|+|.|.|.
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   87 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS   87 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEEC
Confidence            345678899999999999999999999999999999999999988776653  22 357999999999999999999999


Q ss_pred             CeeeEEEEEEEEEE
Q psy11701        110 VGEAKSYSIDLSVL  123 (745)
Q Consensus       110 ~g~~~~~~~~l~V~  123 (745)
                      .|... .++.|.|.
T Consensus        88 ~G~~~-~~~~L~V~  100 (102)
T d1fhga_          88 LGEAT-CTAELLVE  100 (102)
T ss_dssp             TEEEE-EEEEEEEE
T ss_pred             CcEEE-EEEEEEEE
Confidence            99876 66888875

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.7e-15  Score=116.47  Aligned_cols=91  Identities=24%  Similarity=0.300  Sum_probs=79.2

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      |+..+++..+.+|+++.|.|.+.|.|.+++.|+||+..|....++.+.  ....+|.|.+++.+|+|.|+|.|.|..|..
T Consensus         3 ~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   82 (101)
T d2cqva1           3 IIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSR   82 (101)
T ss_dssp             ESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEE
T ss_pred             EEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEE
Confidence            346688999999999999999999999999999999999888876653  344589999999999999999999999987


Q ss_pred             EEEEEEEEEEecCe
Q psy11701        114 KSYSIDLSVLAAPY  127 (745)
Q Consensus       114 ~~~~~~l~V~~~p~  127 (745)
                      . .++.|.|...|.
T Consensus        83 ~-~~~~l~V~~~P~   95 (101)
T d2cqva1          83 Q-AQVNLTVVDKPD   95 (101)
T ss_dssp             E-CCEEEEEECSCS
T ss_pred             E-EEEEEEEEecCC
Confidence            6 678999987763

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.6e-15  Score=121.02  Aligned_cols=98  Identities=15%  Similarity=0.232  Sum_probs=83.1

Q ss_pred             EeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCc
Q psy11701        497 FVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST  576 (745)
Q Consensus       497 ~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t  576 (745)
                      ++|..++|++|.++++...+.++|.|+|.+|.+++++|.+|.|+|+..........      ........+.+.+|.|++
T Consensus         4 f~T~~~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~Y~i~~~~~~~~~~~~~------~~~~~~~~~~~~~L~p~t   77 (105)
T d1x3da1           4 FTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQ------CYMGSQKQFKITKLSPAM   77 (105)
T ss_dssp             CCCCCSCCCCCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTSSSCCEE------EEEESCSEEEEESCCTTC
T ss_pred             EECCCCCCcCCCCCEEEEccCCEEEEEEECCCCCcCccEEEEEEEecCCCcceeEE------EecCCccEEEecCCcCCc
Confidence            67888999999999999999999999999999888999999999986554432211      224566899999999999


Q ss_pred             cEEEEEEEEecCCCCCCcceeeec
Q psy11701        577 KYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       577 ~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      .|.|+|+|+|..|.|++|+.+...
T Consensus        78 ~Y~frV~A~N~~G~s~~S~~~~~~  101 (105)
T d1x3da1          78 GCKFRLSARNDYGTSGFSEEVLYY  101 (105)
T ss_dssp             EEEEECCEEESSCBCCCCCCEEEE
T ss_pred             EEEEEEEEECCCeEcCCCCcEEEE
Confidence            999999999999999999877544

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.6e-15  Score=118.08  Aligned_cols=96  Identities=22%  Similarity=0.330  Sum_probs=79.0

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      +.|++|.++++...+.+++.|+|++|.+.+|++.+|.|+|+.......................+++|.+|+|++.|.|+
T Consensus         1 d~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   80 (103)
T d1qg3a2           1 EVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT   80 (103)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEEE
T ss_pred             CcCccCCCcEEEEecCCEEEEEEEECccCCCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEEE
Confidence            46899999999999999999999999999999999999999876543322222112233566788999999999999999


Q ss_pred             EEEEecCCCCCCccee
Q psy11701        582 LAGYTKAGDGAESKYL  597 (745)
Q Consensus       582 V~a~n~~G~g~~S~~~  597 (745)
                      |.|+|.+|.|+++..+
T Consensus        81 V~A~n~~G~g~~s~~~   96 (103)
T d1qg3a2          81 VKARNGAGWGPEREAI   96 (103)
T ss_dssp             EEEEETTEECCCEEEE
T ss_pred             EEEEcCCccCCCcccc
Confidence            9999999999997654

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.58  E-value=9.4e-15  Score=111.77  Aligned_cols=86  Identities=40%  Similarity=0.743  Sum_probs=74.7

Q ss_pred             cCeEEecCce-eEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        125 APYFTVEPEF-INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       125 ~p~~~~~~~~-~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      +|.|...|.. ..+.+|+++.|.|.+.|.|.|.++|+|+|..+..    .+....++.|.|.++..+|+|.|+|.|.|..
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~   77 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG----GRATVTDSGLVIKGVKNGDKGYYGCRATNEH   77 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS----SSEEEETTEEEESSCCSTTCEEEEEEEEETT
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc----ccEEEeeeeEEECCCChhhCEEEEEEEEECC
Confidence            5778777654 5688999999999999999999999999999863    2455667789999999999999999999999


Q ss_pred             ceEEEEEEEEE
Q psy11701        204 GYVYKDVYVNV  214 (745)
Q Consensus       204 g~~~~~~~l~v  214 (745)
                      |.....+.|.|
T Consensus        78 G~~~~~~~l~V   88 (89)
T d1biha4          78 GDKYFETLVQV   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            99888888776

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.58  E-value=1e-14  Score=114.34  Aligned_cols=90  Identities=26%  Similarity=0.266  Sum_probs=76.6

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec---cCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG---NYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      +.|+..+++..+.+|++++|.|.+.|.|.|.++|+||+.+|..+.+....   ....+|.|.+++.+|.|.|+|.|.|..
T Consensus         5 P~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   84 (98)
T d1g1ca_           5 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIA   84 (98)
T ss_dssp             EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECC
Confidence            35567789999999999999999999999999999999999887764432   223489999999999999999999999


Q ss_pred             eeeEEEEEEEEEEe
Q psy11701        111 GEAKSYSIDLSVLA  124 (745)
Q Consensus       111 g~~~~~~~~l~V~~  124 (745)
                      |... ..+.|.|..
T Consensus        85 G~~~-~~~~L~V~~   97 (98)
T d1g1ca_          85 GETS-SHAFLLVQA   97 (98)
T ss_dssp             EEEE-EEEEEEEEC
T ss_pred             cEEE-EEEEEEEEE
Confidence            9876 568888763

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=6e-15  Score=117.80  Aligned_cols=94  Identities=15%  Similarity=0.281  Sum_probs=76.0

Q ss_pred             CCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        501 EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       501 ~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      ..+|++|.++.+...+.++|.|+|.++.++|++|++|.|+|+..+.........  . ........+.+.+|.|++.|.|
T Consensus         8 ~~pP~~P~~~~v~~~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~~~~~~~~~~--~-~~~~~~~~~~v~~L~p~t~Y~f   84 (108)
T d1x4za1           8 LSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILAT--S-AIPPSRLSVEITGLEKGISYKF   84 (108)
T ss_dssp             CCCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEE--E-EECTTCCEEEEESCCTTCEEEE
T ss_pred             cCCCccCCCCEEEEccCCEEEEEEECCCCCCCccEEEEEEEEecCCCCceEEEE--E-eecCCccEEEECCCCCCCEEEE
Confidence            357888999999999999999999988887889999999999866542211111  1 1145678999999999999999


Q ss_pred             EEEEEecCCCCCCccee
Q psy11701        581 HLAGYTKAGDGAESKYL  597 (745)
Q Consensus       581 ~V~a~n~~G~g~~S~~~  597 (745)
                      +|.|+|.+|.|.+|+..
T Consensus        85 rV~A~N~~G~s~~S~pS  101 (108)
T d1x4za1          85 RVRALNMLGESEPSAPS  101 (108)
T ss_dssp             EEEEEETTEECCCCCCC
T ss_pred             EEEEECCCcCCCCCCCC
Confidence            99999999999987653

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2e-15  Score=119.82  Aligned_cols=98  Identities=26%  Similarity=0.442  Sum_probs=81.0

Q ss_pred             eEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCC
Q psy11701        495 ISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP  574 (745)
Q Consensus       495 ~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p  574 (745)
                      +.+.|..+.|++|.++++...+.++|.|+|++|.  ++.|.+|.|+|+..+...+....       .....+|.|.+|.|
T Consensus         2 v~v~T~~~vP~~P~~~~~~~~~~~si~l~W~~p~--~~~i~~Y~i~y~~~~~~~~~~~~-------~~~~~~~~i~~L~p   72 (102)
T d1x5za1           2 IQVITQTGVPGQPLNFKAEPESETSILLSWTPPR--SDTIANYELVYKDGEHGEEQRIT-------IEPGTSYRLQGLKP   72 (102)
T ss_dssp             CCCCCCSCCCCCCEEEEEECSSSSEEEEEEECCS--CCCCCEEEECBEESSSCCCBCCE-------ECSSSEEEEECCCT
T ss_pred             eEEECCCCCCcCCCCeEEEEccCCEEEEEEECCC--CCCccceEEEEEeCCCCceEEEE-------cCCcCEEEECCCCC
Confidence            3467888999999999999999999999999985  46799999999986654433222       23457899999999


Q ss_pred             CccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        575 STKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       575 ~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      ++.|.|+|.|+|..|.|++|..+...+
T Consensus        73 ~t~Y~~~V~A~n~~G~g~~S~~v~~~T   99 (102)
T d1x5za1          73 NSLYYFRLAARSPQGLGASTAEISART   99 (102)
T ss_dssp             TCEEEECEEEECSSCEEEECCCEEEEC
T ss_pred             CCEEEEEEEEEcCCCEeCCCCCEEEEc
Confidence            999999999999999999988765543

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.5e-15  Score=123.16  Aligned_cols=102  Identities=25%  Similarity=0.416  Sum_probs=83.1

Q ss_pred             eEEeCCCCCCC-CCCceeEEEcCCceEEEEeeCCC--CCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecC
Q psy11701        495 ISFVTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPE--QPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAG  571 (745)
Q Consensus       495 ~~~~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~--~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  571 (745)
                      +.++|.+++|. +|.++++...+.++|.|+|++|.  ..+|.|.+|.|+|+..+...+....     ...+...++.|.+
T Consensus         2 v~v~T~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~-----~~~~~~~~~~i~~   76 (119)
T d1x5ha1           2 VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTET-----LVSGTQLSQLIEG   76 (119)
T ss_dssp             CCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECC-----BCCTTCCEEEEEC
T ss_pred             EEEEcCCCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeee-----ecCCCccEEEeCC
Confidence            45678888885 78999999999999999999874  4678999999999887654332211     1255678999999


Q ss_pred             CCCCccEEEEEEEEecCCCCCCcceeeecc
Q psy11701        572 LEPSTKYRIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       572 L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      |+|++.|.|+|.|+|..|.|++|..+...+
T Consensus        77 L~p~t~Y~~~V~A~n~~G~G~~S~~~~~~T  106 (119)
T d1x5ha1          77 LDRGTEYNFRVAALTINGTGPATDWLSAET  106 (119)
T ss_dssp             CCSSCEEEEECEEEETTEEEEECCCEEEEC
T ss_pred             CCCCCEEEEEEEEEcCCcCCCCCCCEEEEe
Confidence            999999999999999999999998765543

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.57  E-value=1.3e-14  Score=113.69  Aligned_cols=93  Identities=19%  Similarity=0.260  Sum_probs=79.2

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec--CceEEEccCCCCCCEEEEEEEEe
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG--PNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      .+|.|...+.+..+.+|+++.|.|.+.|.|.+.++|+|||..+............  ...|.|.++..+|+|.|+|.|.|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            3688888899999999999999999999999999999999999754432222222  34799999999999999999999


Q ss_pred             CCceEEEEEEEEEee
Q psy11701        202 SLGYVYKDVYVNVLA  216 (745)
Q Consensus       202 ~~g~~~~~~~l~v~~  216 (745)
                      ..|.....+.|.|..
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999988863

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.5e-15  Score=121.71  Aligned_cols=99  Identities=16%  Similarity=0.193  Sum_probs=81.2

Q ss_pred             CCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccE
Q psy11701        499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY  578 (745)
Q Consensus       499 t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y  578 (745)
                      +.++.|++|.++++...+.++|.|+|++|.+++++|.+|.|+|+......+..+.............++.+.+|.|++.|
T Consensus         6 ~p~~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y   85 (111)
T d1wisa1           6 VPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCY   85 (111)
T ss_dssp             CCCCCCCCCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEE
T ss_pred             CCCCCCcCCCCCEEEEcCCCEEEEEEeCCCCCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEE
Confidence            45678999999999999999999999999988899999999998766554443322222223566788999999999999


Q ss_pred             EEEEEEEecCCCCCCccee
Q psy11701        579 RIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       579 ~~~V~a~n~~G~g~~S~~~  597 (745)
                      .|+|.|.|.+|.|++|+..
T Consensus        86 ~frV~A~N~~G~s~~S~~s  104 (111)
T d1wisa1          86 SFRMRQVNIVGTSPPSQPS  104 (111)
T ss_dssp             CCCCEEECSSCBCCCCCCC
T ss_pred             EEEEEEEcCCcCCCCcCCC
Confidence            9999999999999998654

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.56  E-value=4.1e-15  Score=117.40  Aligned_cols=93  Identities=14%  Similarity=0.215  Sum_probs=74.9

Q ss_pred             CCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        501 EGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       501 ~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      .++|++|.++.+.. +.+++.|+|++|.+++++|.+|.|+|+......+......    ......++.+.+|.|++.|.|
T Consensus         3 ~dvP~~P~~~~v~~-~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~L~p~t~Y~f   77 (100)
T d1cfba1           3 QDVPNAPKLTGITC-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYE----KVPNTDSSFVVQMSPWANYTF   77 (100)
T ss_dssp             CCCCCCCEEEEEEE-CSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEE----EEETTCSEEEEECCSSEEEEE
T ss_pred             ccCCCcCcCcEEEE-cCCEEEEEEcCCcccccceEEEEEEEecCCCCceeeEEee----ecCCceEEEEecCCCCCEEEE
Confidence            36899999999865 6689999999999988999999999997665443332221    123457889999999999999


Q ss_pred             EEEEEecCCCCCCcceee
Q psy11701        581 HLAGYTKAGDGAESKYLF  598 (745)
Q Consensus       581 ~V~a~n~~G~g~~S~~~~  598 (745)
                      +|.|.|.+|.|++|+.+.
T Consensus        78 rV~A~n~~G~g~~S~~s~   95 (100)
T d1cfba1          78 RVIAFNKIGASPPSAHSD   95 (100)
T ss_dssp             EEEEEETTEECCCCCCCC
T ss_pred             EEEEEeCCcCCCCcCCCc
Confidence            999999999999987543

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.7e-15  Score=120.09  Aligned_cols=99  Identities=23%  Similarity=0.298  Sum_probs=74.3

Q ss_pred             ceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCC
Q psy11701        494 IISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE  573 (745)
Q Consensus       494 ~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  573 (745)
                      .+.+++.+.+|..|. +.+...+.++|.|+|++|.++|++|++|.|+|+..+...+....     ......++++|.+|.
T Consensus         4 ~l~v~~~P~~P~~p~-~~~~~~~~~sv~l~W~~P~~~~~~I~~Y~v~~~~~~~~~~~~~~-----~~~~~~~~~~i~~L~   77 (108)
T d1wf5a1           4 HLRVRQLPHAPEHPV-ATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLA-----SVDPKATSVTVKGLV   77 (108)
T ss_dssp             CSSCCCCCCCCSSCE-EEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTCCCEEEES-----SCCTTCCEEEEESCC
T ss_pred             ccEEecCCCCCCCCE-EEEEeccCCEEEEEEECCCCCCCccEEEEEEEEeccCCceEEee-----eecCCccEEEECCCC
Confidence            344555555555442 44455688999999999988888999999999976654221111     114566889999999


Q ss_pred             CCccEEEEEEEEecCCCCCCcceee
Q psy11701        574 PSTKYRIHLAGYTKAGDGAESKYLF  598 (745)
Q Consensus       574 p~t~Y~~~V~a~n~~G~g~~S~~~~  598 (745)
                      |++.|.|+|.|.|..|.|++|..+.
T Consensus        78 p~t~Y~frV~A~N~~G~s~~S~~~~  102 (108)
T d1wf5a1          78 PARSYQFRLCAVNDVGKGQFSKDTE  102 (108)
T ss_dssp             TTCEEEEEEEEEESSCEEEECCCCS
T ss_pred             CCCEEEEEEEEEcCCcCCCCcCCcC
Confidence            9999999999999999999987653

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.56  E-value=5.4e-15  Score=114.64  Aligned_cols=88  Identities=18%  Similarity=0.248  Sum_probs=75.3

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      +.++..+.+..+.+|+++.|.|.+.|.|.|.+.|+||+..|....++...  ....+|.|.+++.+|+|.|+|.|.|..|
T Consensus         3 P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G   82 (93)
T d1wiua_           3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELG   82 (93)
T ss_dssp             CEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTE
T ss_pred             CeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCC
Confidence            34456788999999999999999999999999999999999877665443  3445899999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy11701        112 EAKSYSIDLSV  122 (745)
Q Consensus       112 ~~~~~~~~l~V  122 (745)
                      ... ..+.|.|
T Consensus        83 ~~~-~~~~l~V   92 (93)
T d1wiua_          83 EDE-AIFEVIV   92 (93)
T ss_dssp             EEE-EEEEEEE
T ss_pred             EEE-EEEEEEE
Confidence            876 6677776

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=4.8e-15  Score=115.71  Aligned_cols=87  Identities=23%  Similarity=0.383  Sum_probs=78.2

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI  118 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~  118 (745)
                      ...+..+.+|++++|.|.+.+ +.+.+.|+++|+.|....+.......++|.|.+++.+|.|.|+|.|.|..|...+..+
T Consensus         9 ~~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~   87 (96)
T d1l6za2           9 QVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSI   87 (96)
T ss_dssp             ECSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCC
T ss_pred             EcCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeE
Confidence            457788999999999999876 5579999999999998888888788889999999999999999999999988877789


Q ss_pred             EEEEEecC
Q psy11701        119 DLSVLAAP  126 (745)
Q Consensus       119 ~l~V~~~p  126 (745)
                      .|.|..+|
T Consensus        88 ~L~V~~~P   95 (96)
T d1l6za2          88 KLDIIFDP   95 (96)
T ss_dssp             EEEECCSC
T ss_pred             EEEEEcCC
Confidence            99998877

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.5e-15  Score=117.66  Aligned_cols=98  Identities=18%  Similarity=0.287  Sum_probs=78.5

Q ss_pred             eEEeCCCCCCCCCCcee-EEEcCCceEEEEeeCCCCCC-CceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCC
Q psy11701        495 ISFVTPEGVPGTVQSLE-AIPLGSSAFYLKWVKPEQPN-GVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL  572 (745)
Q Consensus       495 ~~~~t~~~~P~~p~~~~-~~~~~~~~i~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  572 (745)
                      +.++|.+++|++|..+. +..++.++|.|+|++|.+.+ .++.+|.++|+..+...+....      .....+.+.+.+|
T Consensus         2 v~~~T~~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~------~~~~~~~~~i~~L   75 (107)
T d2crma1           2 VEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMI------YSGATREHLCDRL   75 (107)
T ss_dssp             CSCCSCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEE------ECSSCSEEEECSC
T ss_pred             EEEECCCCCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEe------ecCCccEEEEecc
Confidence            45778889999998854 45568899999999987655 4799999999876654333222      1456788999999


Q ss_pred             CCCccEEEEEEEEecCCCCCCcceee
Q psy11701        573 EPSTKYRIHLAGYTKAGDGAESKYLF  598 (745)
Q Consensus       573 ~p~t~Y~~~V~a~n~~G~g~~S~~~~  598 (745)
                      .|++.|.|+|.|.|..|.|++|+.+.
T Consensus        76 ~p~t~Y~~rV~A~n~~G~s~~S~~v~  101 (107)
T d2crma1          76 NPGCFYRLRVYCISDGGQSAVSESLL  101 (107)
T ss_dssp             CTTSCEEEEEEEEETTEECCCCCCCC
T ss_pred             CCCCEEEEEEEEECCCcCcCCCCcEE
Confidence            99999999999999999999987654

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.55  E-value=9.9e-15  Score=114.16  Aligned_cols=92  Identities=25%  Similarity=0.436  Sum_probs=77.9

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-ecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .|.|...|.+..+.+|+++.|.|.+.|.|.+.++|+|+|..+.......... .....|.|.++..+|+|.|+|.|.|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            3788899999999999999999999999999999999999987543221111 123479999999999999999999999


Q ss_pred             ceEEEEEEEEEee
Q psy11701        204 GYVYKDVYVNVLA  216 (745)
Q Consensus       204 g~~~~~~~l~v~~  216 (745)
                      |.....+.|.|..
T Consensus        81 G~~~~~~~l~V~~   93 (97)
T d1koaa1          81 GTKEEIVFLNVTR   93 (97)
T ss_dssp             EEEEEEECCEEEC
T ss_pred             CEEEEEEEEEEee
Confidence            9998888888875

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.5e-14  Score=115.31  Aligned_cols=102  Identities=22%  Similarity=0.346  Sum_probs=82.5

Q ss_pred             eCCCCCCC-CCCceeEEEcCCceEEEEeeCCC--CCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCC
Q psy11701        498 VTPEGVPG-TVQSLEAIPLGSSAFYLKWVKPE--QPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP  574 (745)
Q Consensus       498 ~t~~~~P~-~p~~~~~~~~~~~~i~l~W~~p~--~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p  574 (745)
                      +|.+++|. +|.++++...+.++|.|+|++|.  +.++++.+|.|.|+..+......+....... .....++.|.+|.|
T Consensus         2 ~T~~~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p   80 (109)
T d1va9a1           2 STEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKA-TGDSEVYTLDNLKK   80 (109)
T ss_dssp             CSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCC-CSSEEEEEEESCCS
T ss_pred             CCcCCCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEec-CCCeeEEEECCCCc
Confidence            57777785 88899999999999999999885  3567999999999988766554443322212 45678999999999


Q ss_pred             CccEEEEEEEEecCCCCCCcceeeec
Q psy11701        575 STKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       575 ~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      ++.|.|+|.|.|..|.|++|.++...
T Consensus        81 ~t~Y~~~V~a~n~~G~g~~S~~v~~~  106 (109)
T d1va9a1          81 FAQYGVVVQAFNRAGTGPSSSEINAT  106 (109)
T ss_dssp             SCCEEEEEEEEETTEECCCCCCEECC
T ss_pred             ceEEEEEEEEEcCCcCCCCCCCEEEE
Confidence            99999999999999999998876544

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1e-14  Score=132.52  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=48.0

Q ss_pred             CCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEE
Q psy11701        503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHL  582 (745)
Q Consensus       503 ~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V  582 (745)
                      .|++|.++.+...+.++|.|+|++|.+.||.|.+|.|+|+.........           .........|.+++.|.++|
T Consensus         2 ~Ps~P~~~~~~~~s~~si~vsW~pP~~~ng~i~~Y~V~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~y~~~v   70 (196)
T d2dtge2           2 NPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELF-----------ELDYCLKGLKLPSRTWSPPF   70 (196)
T ss_dssp             CCCCCEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCEEEECCCCSCT-----------TCSSSCSCCCCCC-------
T ss_pred             cCcCCcCCEEEeccCCEEEEEEECCCCCCCcEEEEEEEEEcCCCCCcee-----------EEeeEEeccccceeEEEEEE
Confidence            4889999999999999999999999988899999999999876543221           11223334567889999999


Q ss_pred             EEEecCCCCCCcce
Q psy11701        583 AGYTKAGDGAESKY  596 (745)
Q Consensus       583 ~a~n~~G~g~~S~~  596 (745)
                      .|.+..|.+..+..
T Consensus        71 ~~~~~~~~~~~~~~   84 (196)
T d2dtge2          71 ESEDSQKHNQSEYE   84 (196)
T ss_dssp             --------------
T ss_pred             EEEcCCccccCcCC
Confidence            99999988877543

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=9.7e-15  Score=118.92  Aligned_cols=104  Identities=18%  Similarity=0.245  Sum_probs=83.9

Q ss_pred             CCCCCCcceEEeCCCCCCCCCCceeEEEcCCceEEEEeeCC--CCCCCceeeEEEEEEEcCCcccCCcccccccccCCCc
Q psy11701        487 YNGPPSEIISFVTPEGVPGTVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT  564 (745)
Q Consensus       487 G~g~~S~~~~~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~  564 (745)
                      |.|.+|..+.++|.+++|+.|+.+.+...+.++|.|.|+++  .+.+|.|++|.|+|+..+...+.        + ....
T Consensus         1 G~s~~S~~v~v~T~~~~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~--------~-~~~~   71 (117)
T d1wj3a_           1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQ--------V-LNTN   71 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCE--------E-EEES
T ss_pred             CcCCCCCCEEEEcCCCCcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCcee--------e-eece
Confidence            67889999999999999987666666667889999999974  35678999999999886644321        1 1123


Q ss_pred             ceeeecCCCCCccEEEEEEEEecCCCCCCcceeee
Q psy11701        565 TSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFY  599 (745)
Q Consensus       565 ~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~  599 (745)
                      ..+.+.+|.|++.|.|+|.|+|.+|.|++|+.+.+
T Consensus        72 ~~~~~~~L~p~t~Y~~~V~A~n~~G~G~~S~~v~v  106 (117)
T d1wj3a_          72 KTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRI  106 (117)
T ss_dssp             SSEEEEECCCSSCEEEEEEEEESSCCCCBCCCEEE
T ss_pred             eeEEEeeccCCcEEEEEEEEEcCCccCCCCCCEEE
Confidence            56788899999999999999999999999986543

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.54  E-value=3e-14  Score=112.56  Aligned_cols=92  Identities=27%  Similarity=0.481  Sum_probs=78.4

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec--CceEEEccCCCCCCEEEEEEEEe
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG--PNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      .+|.|...|.+..+.+|+++.|.|.+.|.|.+.+.|+|||..+............  ...|.|.++..+|+|.|+|.|.|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            3688888999999999999999999999999999999999999854322211222  35799999999999999999999


Q ss_pred             CCceEEEEEEEEEe
Q psy11701        202 SLGYVYKDVYVNVL  215 (745)
Q Consensus       202 ~~g~~~~~~~l~v~  215 (745)
                      ..|....++.|.|.
T Consensus        87 ~~G~~~~~~~L~V~  100 (102)
T d1fhga_          87 SLGEATCTAELLVE  100 (102)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99999999988886

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-14  Score=113.56  Aligned_cols=91  Identities=27%  Similarity=0.553  Sum_probs=76.8

Q ss_pred             CCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      |++|..+++...+.++|+|+|++|.+.+|+|.+|.|+|+......+....      .......+.+.+|.|++.|+|+|.
T Consensus         1 P~~~~~l~~~~~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~------~~~~~~~~~i~~L~p~t~Y~~~V~   74 (95)
T d2djsa1           1 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSM------ARSQTNTARIDGLRPGMVYVVQVR   74 (95)
T ss_dssp             CCCCSCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCSTTCEE------EEESSSEEEEESCCTTCEEEEEEE
T ss_pred             CCCCCccEEEeecCCEEEEEEEECCCCCcceEEeeeeeeeeccCcceeEe------ecCCccEEEEeecCCccEEEEEEE
Confidence            56677899999999999999999998899999999999987655443322      144668899999999999999999


Q ss_pred             EEecCCCCCCcceeeec
Q psy11701        584 GYTKAGDGAESKYLFYV  600 (745)
Q Consensus       584 a~n~~G~g~~S~~~~~~  600 (745)
                      |.|.+|.|++|+.+.+.
T Consensus        75 A~n~~G~g~~S~~~~~~   91 (95)
T d2djsa1          75 ARTVAGYGKFSGKMCFQ   91 (95)
T ss_dssp             EEESSCEEEECCCEEEE
T ss_pred             EEcCCCCCCCCCCEEEE
Confidence            99999999998876544

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2e-14  Score=108.27  Aligned_cols=81  Identities=20%  Similarity=0.288  Sum_probs=68.1

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      .|...|.+..+.+|+++.|.|.+.|.|.| +|.|+|||.+|....       ...+.|.....+|+|.|+|.|.|..|..
T Consensus         3 ~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~   75 (85)
T d1rhfa2           3 FFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------PSPSVLNVTGVTQSTMFSCEAHNLKGLA   75 (85)
T ss_dssp             EEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-------ESSEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             cEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-------CcceEEecCCccccEEEEEEEEcCCCcE
Confidence            45678899999999999999999999988 999999999987432       2235666777789999999999999987


Q ss_pred             EEEEEEEEE
Q psy11701        114 KSYSIDLSV  122 (745)
Q Consensus       114 ~~~~~~l~V  122 (745)
                      .++.+.|.|
T Consensus        76 ~S~~~~v~V   84 (85)
T d1rhfa2          76 SSRTATVHL   84 (85)
T ss_dssp             ECCCEEEEE
T ss_pred             EEEEEEEEE
Confidence            777777776

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.4e-14  Score=110.34  Aligned_cols=89  Identities=20%  Similarity=0.290  Sum_probs=76.6

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      +.|...|.+..+.+|+++.|.|.+.|.|.+.++|+|++..+............++.|.|.++...|+|.|+|.|.|..+.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   81 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG   81 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCC
Confidence            56778899999999999999999999999999999999999876555555556778999999999999999999998777


Q ss_pred             EEEEEEEEE
Q psy11701        206 VYKDVYVNV  214 (745)
Q Consensus       206 ~~~~~~l~v  214 (745)
                      ......|.|
T Consensus        82 ~~~~~~i~V   90 (92)
T d1epfa2          82 EINFKDIQV   90 (92)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            666655555

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=3.3e-14  Score=109.38  Aligned_cols=86  Identities=27%  Similarity=0.382  Sum_probs=72.9

Q ss_pred             cCeEEec-CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        125 APYFTVE-PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       125 ~p~~~~~-~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      +|.+... |.+..+.+|+++.|.|.+.|.|.+.+.|+|++.....     .....++.|.|.++..+|+|.|+|.|.|..
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   78 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-----KWLSSEPLLHIQNVDFEDEGTYECEAENIK   78 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC-----CCSBSSSEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce-----EeeeeeeEEEeCCCCccCCEEEEEEEEECC
Confidence            5666654 7888999999999999999999999999997654331     233456789999999999999999999999


Q ss_pred             ceEEEEEEEEEe
Q psy11701        204 GYVYKDVYVNVL  215 (745)
Q Consensus       204 g~~~~~~~l~v~  215 (745)
                      |.....+.|.|.
T Consensus        79 G~~~~~~~l~V~   90 (91)
T d1cs6a3          79 GRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            999888888875

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.53  E-value=2.7e-15  Score=115.76  Aligned_cols=87  Identities=22%  Similarity=0.437  Sum_probs=74.5

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeE--eccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS--QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      |+..|+++.+.+|+++.|.|.+.|.|.|.+.|++||.+|....++.  ......+|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   81 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence            4567788999999999999999999999999999999998776644  34455689999999999999999999999887


Q ss_pred             EEEEEEEEEE
Q psy11701        114 KSYSIDLSVL  123 (745)
Q Consensus       114 ~~~~~~l~V~  123 (745)
                      . ..+.|.|.
T Consensus        82 ~-~~~~l~V~   90 (91)
T d1tnna_          82 E-AEFTLTIQ   90 (91)
T ss_dssp             C-EEEEEECC
T ss_pred             E-EEEEEEEE
Confidence            6 56777764

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.8e-14  Score=108.02  Aligned_cols=88  Identities=15%  Similarity=0.189  Sum_probs=71.6

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEe-ecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      +|..+..++....+.+|+++.|.|.+. |.|.++++|++++.++.   .......++.|.|.+++.+|+|.|+|.|.|..
T Consensus         2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~   78 (90)
T d1gsma1           2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG---AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGG   78 (90)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC---CEEEESSEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee---eeeccCceeeEEcCccChhhCCcEEEEEEeCC
Confidence            466666666778899999999999884 78999999999887763   23334556789999999999999999999998


Q ss_pred             eeeEEEEEEEEEE
Q psy11701        111 GEAKSYSIDLSVL  123 (745)
Q Consensus       111 g~~~~~~~~l~V~  123 (745)
                      |... .++.|.|+
T Consensus        79 g~~~-~s~~l~Vy   90 (90)
T d1gsma1          79 RTFQ-HTVQLLVY   90 (90)
T ss_dssp             EEEE-EEEEEEEE
T ss_pred             CcEE-EEEEEEEC
Confidence            8755 77888774

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1e-14  Score=112.67  Aligned_cols=85  Identities=29%  Similarity=0.390  Sum_probs=72.1

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe--ccC--CcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ--GNY--GKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~--~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      .|.++.+.+|++++|.|.+.|.|.|.+.|+||+.+|....+...  ...  ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            46788999999999999999999999999999999987655332  222  24799999999999999999999999877


Q ss_pred             EEEEEEEEE
Q psy11701        115 SYSIDLSVL  123 (745)
Q Consensus       115 ~~~~~l~V~  123 (745)
                      +..+.|.|.
T Consensus        82 S~~~~l~V~   90 (91)
T d1rhfa1          82 SQPVWLTVE   90 (91)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence            677888875

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.52  E-value=1.9e-14  Score=111.91  Aligned_cols=88  Identities=24%  Similarity=0.295  Sum_probs=73.9

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCC-CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSD-RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      +.+...|.++.+.+|++++|.|.+.|.|.| .+.|++||.+|.... +......+++|.|.+++.+|+|.|+|.|.|..|
T Consensus         3 P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   82 (94)
T d1biha1           3 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAG   82 (94)
T ss_dssp             CEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCC
Confidence            456678899999999999999999999866 799999999997543 455555667899999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy11701        112 EAKSYSIDLS  121 (745)
Q Consensus       112 ~~~~~~~~l~  121 (745)
                      ...+..+.|.
T Consensus        83 ~~~s~~v~l~   92 (94)
T d1biha1          83 VASSRVISFR   92 (94)
T ss_dssp             EEECCCEEEE
T ss_pred             EEEEEEEEEE
Confidence            8776555554

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=5.5e-14  Score=110.62  Aligned_cols=82  Identities=33%  Similarity=0.551  Sum_probs=68.9

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCC----CeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEE
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD----RISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYS  117 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~  117 (745)
                      +..+.+|++++|.|.+.|.|.|.|.|+|+|..|....    +.......+.|.|.+++.+|+|.|+|.|.|..|... ..
T Consensus        14 ~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~   92 (100)
T d1qz1a3          14 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD-AS   92 (100)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEE-EE
T ss_pred             eEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEE-EE
Confidence            4466789999999999999999999999999987542    233445567999999999999999999999999876 66


Q ss_pred             EEEEEEe
Q psy11701        118 IDLSVLA  124 (745)
Q Consensus       118 ~~l~V~~  124 (745)
                      +.|.|..
T Consensus        93 ~~l~V~~   99 (100)
T d1qz1a3          93 IHLKVFA   99 (100)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            8888864

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.6e-15  Score=118.85  Aligned_cols=92  Identities=17%  Similarity=0.184  Sum_probs=75.9

Q ss_pred             CCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCccc-CCcccccccccCCCcceeeecCCCCCccE
Q psy11701        500 PEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV-GPLLERLPYISDPTTTSAKLAGLEPSTKY  578 (745)
Q Consensus       500 ~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y  578 (745)
                      ..+.|++|.++.+..++.++|+|+|++|.+.+++|.+|.|+|+....... .....      ....+.|+|.+|.|++.|
T Consensus        12 ~~~~P~pP~~~~v~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~------~~~~~~~~v~~L~p~t~Y   85 (117)
T d1uema_          12 LSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVAN------HVKTTLYTVRGLRPNTIY   85 (117)
T ss_dssp             SCCSCBCCCCCEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEEEEEEEEE------EECSSEEEECSCCTTCEE
T ss_pred             eCccCcCCCCCEEEEccCCEEEEEEECCCcCCCCeEEEEEEEeccCCceeeEEecc------ccccccceECCCCCCCEE
Confidence            34689999999999999999999999988888899999999987664432 21111      234578999999999999


Q ss_pred             EEEEEEEecCCCCCCccee
Q psy11701        579 RIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       579 ~~~V~a~n~~G~g~~S~~~  597 (745)
                      .|+|.|+|..|.|.+|+..
T Consensus        86 ~frV~A~N~~G~s~~S~~s  104 (117)
T d1uema_          86 LFMVRAINPQGLSDPSPMS  104 (117)
T ss_dssp             EEEEEEEETTEEEEECCCC
T ss_pred             EEEEEEEeCCcCCCCcCCC
Confidence            9999999999999988754

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.7e-14  Score=112.47  Aligned_cols=91  Identities=22%  Similarity=0.260  Sum_probs=76.7

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      |.|...|.+..+.+|+++.|.|.+.|.|.+.++|+|+|..+........... ....|.|.++..+|+|.|+|.|.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            5677778899999999999999999999999999999999875432211111 234799999999999999999999999


Q ss_pred             eEEEEEEEEEee
Q psy11701        205 YVYKDVYVNVLA  216 (745)
Q Consensus       205 ~~~~~~~l~v~~  216 (745)
                      .....+.|.|..
T Consensus        81 ~~~~~~~l~V~~   92 (101)
T d2cqva1          81 SRQAQVNLTVVD   92 (101)
T ss_dssp             EEECCEEEEEEC
T ss_pred             EEEEEEEEEEEe
Confidence            999999999986

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.52  E-value=2e-14  Score=111.41  Aligned_cols=91  Identities=22%  Similarity=0.258  Sum_probs=77.7

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      +|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+........... ....|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            57888888999999999999999999999999999999998875543322222 34589999999999999999999999


Q ss_pred             ceEEEEEEEEEe
Q psy11701        204 GYVYKDVYVNVL  215 (745)
Q Consensus       204 g~~~~~~~l~v~  215 (745)
                      |.....+.|.|.
T Consensus        82 G~~~~~~~l~V~   93 (93)
T d1wiua_          82 GEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEC
Confidence            999988888773

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=111.84  Aligned_cols=89  Identities=18%  Similarity=0.291  Sum_probs=74.5

Q ss_pred             CCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      |++|..+++...+.++|.|+|++|.+.+++|.+|.|+|+..+...+.        ......++++|.+|.|++.|.|+|.
T Consensus         1 P~~P~~~~v~~~s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~--------~~~~~~~~~~i~~L~p~t~Y~~~V~   72 (93)
T d1x4xa1           1 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQI--------CYCGPGLSYEIKGLSPATTYYCRVQ   72 (93)
T ss_dssp             CCCCCCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTSCCE--------EEEESCSEEEEESCCSSCEEEEEEE
T ss_pred             CcCCCCCEEEEeCCCeEEEEEEecccCCCeeEEEEEEEccCCCcceE--------eecCCccEEEEcccceeeEEEEEEE
Confidence            56777888888899999999999998889999999999876544221        1144668899999999999999999


Q ss_pred             EEecCCCCCCcceeeec
Q psy11701        584 GYTKAGDGAESKYLFYV  600 (745)
Q Consensus       584 a~n~~G~g~~S~~~~~~  600 (745)
                      |+|..|.|++|+.+.+.
T Consensus        73 A~n~~G~s~~S~~~~~~   89 (93)
T d1x4xa1          73 ALSVVGAGPFSEVVACV   89 (93)
T ss_dssp             EECSSCCCCBCCCEEEE
T ss_pred             EEECCcCcCCCCcEEEE
Confidence            99999999999776544

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.52  E-value=5.3e-14  Score=109.73  Aligned_cols=85  Identities=32%  Similarity=0.599  Sum_probs=71.9

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC--eEec--cCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQG--NYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~--~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      .+++..+.+|+++.|.|.+.|.|.+.+.|+|+|..|.....  +...  ..+.+|.|.+++.+|+|.|+|.|.|..|...
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            35789999999999999999999999999999999975433  3322  2345899999999999999999999999877


Q ss_pred             EEEEEEEEE
Q psy11701        115 SYSIDLSVL  123 (745)
Q Consensus       115 ~~~~~l~V~  123 (745)
                      +.++.|.|.
T Consensus        89 s~s~~L~Vl   97 (97)
T d1biha3          89 KHSLKLTVV   97 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEC
Confidence            677888873

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.4e-14  Score=113.78  Aligned_cols=101  Identities=18%  Similarity=0.282  Sum_probs=80.8

Q ss_pred             EeCCCCCCC-CCCceeEEE--cCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCC
Q psy11701        497 FVTPEGVPG-TVQSLEAIP--LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE  573 (745)
Q Consensus       497 ~~t~~~~P~-~p~~~~~~~--~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  573 (745)
                      .+|.+.+|. +|.++.+..  .+.++|.|+|++|.+.+|+|.+|.|+|+......+..+....  + .....+++|.+|.
T Consensus         4 ~~T~~~~P~~pP~~~~v~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~--~-~~~~~~~~i~~L~   80 (111)
T d1x5ka1           4 GTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEP--V-VGNRLTHQIQELT   80 (111)
T ss_dssp             SCSCCCCCCSCCEEEEEEECSSCTTCEEEEEECCSCCSSCCCEEEEEEESCSSSCTTTSEEEE--E-STTCSEEEECSCC
T ss_pred             eEeCCCCCCCCCCCcEEEEecCCCCEEEEEEEccccCCCceeeeEEeeeecCCCCcceeEEEE--e-CCCeeEEEECCCC
Confidence            456677775 677787665  467799999999998899999999999977666555443321  2 5667899999999


Q ss_pred             CCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        574 PSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       574 p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      |++.|.|+|.|+|..|.|++|+.+.+.
T Consensus        81 p~t~Y~~~V~A~n~~G~g~~S~~v~~~  107 (111)
T d1x5ka1          81 LDTPYYFKIQARNSKGMGPMSEAVQFR  107 (111)
T ss_dssp             SSSEEEEEEEEECSSCBCCCCCCEEEE
T ss_pred             CCCEEEEEEEEEcCCCCcCCCCCEEEE
Confidence            999999999999999999999876554

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.4e-14  Score=111.50  Aligned_cols=87  Identities=23%  Similarity=0.416  Sum_probs=72.1

Q ss_pred             CCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      |++|. +.+...+.+++.|+|++|.+.+|+|.+|.|+|+..+...+....     + .....++.|.+|.|++.|.|+|.
T Consensus         1 P~~P~-~~~~~~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~~~~~~~~~-----~-~~~~~~~~i~~L~p~t~Y~~~V~   73 (94)
T d2dn7a1           1 PGRPT-MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTID-----F-GKDDQHFTVTGLHKGTTYIFRLA   73 (94)
T ss_dssp             CCCCE-EEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTCSSCEEEE-----E-ETTCCEEEEECCCTTCEEEEEEE
T ss_pred             CCCCc-EeEEEEeCCEEEEEEeCCCCCCCceEEEEEEEEEcCCCCcEEEE-----c-CCCccEEEEEccCCeeEEEEEEE
Confidence            66775 55667789999999999998889999999999987765443322     2 45678999999999999999999


Q ss_pred             EEecCCCCCCccee
Q psy11701        584 GYTKAGDGAESKYL  597 (745)
Q Consensus       584 a~n~~G~g~~S~~~  597 (745)
                      |+|..|.|++|...
T Consensus        74 A~n~~G~g~~s~~~   87 (94)
T d2dn7a1          74 AKNRAGLGEEFEKE   87 (94)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEcCCcCCCCccEE
Confidence            99999999987643

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.1e-13  Score=108.92  Aligned_cols=93  Identities=28%  Similarity=0.552  Sum_probs=75.3

Q ss_pred             ecCeEEecCce--eEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce---eecCceEEEccCCCCCCEEEEEE
Q psy11701        124 AAPYFTVEPEF--INAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR---KVGPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       124 ~~p~~~~~~~~--~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      .||.+...+..  .++.+|+++.|.|.+.|.|.|.+.|+++|..+.........   ....+.|.|.++..+|+|.|+|.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            36777765554  45678999999999999999999999999998754433222   22457899999999999999999


Q ss_pred             EEeCCceEEEEEEEEEee
Q psy11701        199 ATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       199 ~~~~~g~~~~~~~l~v~~  216 (745)
                      |.|..|.....+.|.|..
T Consensus        82 a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          82 AENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEE
Confidence            999999999999988863

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.8e-14  Score=113.74  Aligned_cols=96  Identities=20%  Similarity=0.250  Sum_probs=72.6

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCC-ceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      +.|++|..+.+ ....++|.|+|++|...|| +|++|.|+|+..+...+.......  ........++|.+|.|++.|.|
T Consensus         1 DvP~~P~~~~~-~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~f   77 (101)
T d2haza1           1 DTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA--KEASMEGIVTIVGLKPETTYAV   77 (101)
T ss_dssp             CCCCCCEEEEE-EECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEH--HHHHHHSEEEECSCCTTCEEEE
T ss_pred             CcCcCCccCEE-EeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeee--ecccceeEEEecCCCCCeEEEE
Confidence            46888865554 4577899999999876555 799999999987765443322111  1123456899999999999999


Q ss_pred             EEEEEecCCCCCCcceeeec
Q psy11701        581 HLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       581 ~V~a~n~~G~g~~S~~~~~~  600 (745)
                      +|+|.|.+|.|++|..+.+.
T Consensus        78 rV~A~N~~G~g~~S~~~~~~   97 (101)
T d2haza1          78 RLAALNGKGLGEISAASEFK   97 (101)
T ss_dssp             EEEEEETTEECCCCCCEEEE
T ss_pred             EEEEEeCCcCcCCCCceeEE
Confidence            99999999999999776443

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.6e-14  Score=107.83  Aligned_cols=78  Identities=22%  Similarity=0.291  Sum_probs=66.1

Q ss_pred             ccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEE
Q psy11701         40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSID  119 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~  119 (745)
                      +++..+.+|++++|.|.+.|.|.|.+.|++++..+.        ..+..|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus         6 ~~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~--------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~-~~~~   76 (84)
T d2nxyb2           6 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVE-FKID   76 (84)
T ss_dssp             SCSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE--------EESSEEEESSCCGGGCEEEEEEEEETTEEEE-EEEE
T ss_pred             CCCeEEECCCeEEEEEEeEcCCchheEEEeecccce--------eeeeeeeeeecccccccEEEEEEEeCCCEEE-EEEE
Confidence            345679999999999999999999999999765443        3456799999999999999999999998877 6788


Q ss_pred             EEEEecC
Q psy11701        120 LSVLAAP  126 (745)
Q Consensus       120 l~V~~~p  126 (745)
                      |.|...|
T Consensus        77 v~V~~~~   83 (84)
T d2nxyb2          77 IVVLAFQ   83 (84)
T ss_dssp             ECEECCC
T ss_pred             EEEEecC
Confidence            8887654

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.50  E-value=4.7e-14  Score=110.05  Aligned_cols=80  Identities=33%  Similarity=0.518  Sum_probs=68.1

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC---eEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEE
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR---ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI  118 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~  118 (745)
                      ...+.+|+++.|.|.+.|.|.|++.|+|||.+|....+   ........+|.|.+++.+|+|.|+|.|.|..|... .++
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~   92 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN-HTY   92 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE-EEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEE-EEE
Confidence            35688999999999999999999999999999976543   33344556899999999999999999999999865 677


Q ss_pred             EEEE
Q psy11701        119 DLSV  122 (745)
Q Consensus       119 ~l~V  122 (745)
                      .|.|
T Consensus        93 ~l~V   96 (97)
T d3dara1          93 HLDV   96 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7776

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.4e-14  Score=112.63  Aligned_cols=97  Identities=22%  Similarity=0.307  Sum_probs=80.1

Q ss_pred             CCCCCCCCCCceeEEEcCCceEEEEeeCCC-CCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCcc
Q psy11701        499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPE-QPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK  577 (745)
Q Consensus       499 t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~  577 (745)
                      +....|++|.++.+..++.++|.|+|++|. +.++.|.+|.|+|+..+...+....     .......+++|.+|.|++.
T Consensus         6 t~~~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~L~p~t~   80 (107)
T d1x5fa1           6 TTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVEN-----TSHPGEMQVTIQNLMPATV   80 (107)
T ss_dssp             CCCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEE-----CSSTTCSEEEECSCCTTCE
T ss_pred             CCCCCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEE-----EeCCCccEEEecCCCCCCE
Confidence            344678999999999999999999999986 4577999999999987655443332     2255678999999999999


Q ss_pred             EEEEEEEEecCCCCCCcceeeec
Q psy11701        578 YRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       578 Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      |.|+|.|+|..|.|++|..+.+.
T Consensus        81 Y~~rV~A~n~~G~g~~S~~i~v~  103 (107)
T d1x5fa1          81 YIFRVMAQNKHGSGESSAPLRVE  103 (107)
T ss_dssp             EEEEEEEECSSCEEEECCCEEEE
T ss_pred             EEEEEEEEeCCCCcCCCCCEEEE
Confidence            99999999999999998876554

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-13  Score=106.27  Aligned_cols=81  Identities=17%  Similarity=0.295  Sum_probs=66.9

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      ....+.+|+++.|.|.+.|.|.|.+.|++++..+... ........+.|.|.+++.+|+|.|+|.|.|..|... .++.|
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~-~~~~v   86 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG-KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLE-KGIQV   86 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS-EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEE-EEEEE
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccceee-eeeeecCCcEEEEecccccccceEEEEEEeCCCEEE-EEEEE
Confidence            3456779999999999999999999999987766533 333335556899999999999999999999998766 77888


Q ss_pred             EEE
Q psy11701        121 SVL  123 (745)
Q Consensus       121 ~V~  123 (745)
                      .|.
T Consensus        87 ~V~   89 (90)
T d1vcaa2          87 EIY   89 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.4e-14  Score=106.05  Aligned_cols=85  Identities=20%  Similarity=0.280  Sum_probs=71.1

Q ss_pred             EeeccceeEecCCcEEEEEEEeec-CCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS  115 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~  115 (745)
                      +++++...|.+|++++|.|.+.+. |..++.|+|||+.+...      ..+..|.|.+++.+|+|.|+|.|.+..+...+
T Consensus         4 ilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~------~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S   77 (89)
T d1f2qa2           4 LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQLDYES   77 (89)
T ss_dssp             EEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC------CCSSEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc------cccceEEEeeeeeecCcEEEEEEEeCCCCeEe
Confidence            455666779999999999999666 45599999999988632      23457999999999999999999999888778


Q ss_pred             EEEEEEEEecCe
Q psy11701        116 YSIDLSVLAAPY  127 (745)
Q Consensus       116 ~~~~l~V~~~p~  127 (745)
                      ..+.|.|..+|.
T Consensus        78 ~~v~i~V~~~Pr   89 (89)
T d1f2qa2          78 EPLNITVIKAPR   89 (89)
T ss_dssp             CCEEEEEECSCC
T ss_pred             eeEEEEEEeCCC
Confidence            889999998873

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.49  E-value=4.4e-14  Score=110.14  Aligned_cols=89  Identities=21%  Similarity=0.252  Sum_probs=71.9

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCC-CCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQ-PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      +++.+|.++++..++.++|.|+|++|.. .++.|.+|.|+|+..+.........    +.+.+..++.|.+|+|++.|+|
T Consensus         5 ~P~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~----~~~~~~~~~~i~~L~p~t~Y~~   80 (95)
T d2ibga1           5 DPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKAT----IEGAHARSFKIAPLETATMYEF   80 (95)
T ss_dssp             CCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEE----EECTTCCEEEECSCCTTCEEEE
T ss_pred             CCCCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeee----ccCCceeEEEEeeccCCeEEEE
Confidence            4455688899999999999999998754 5678999999999876543222211    3356778999999999999999


Q ss_pred             EEEEEecCCCCCCc
Q psy11701        581 HLAGYTKAGDGAES  594 (745)
Q Consensus       581 ~V~a~n~~G~g~~S  594 (745)
                      +|.|+|..|.|++|
T Consensus        81 ~V~A~n~~G~s~~S   94 (95)
T d2ibga1          81 KLQSFSAASASEFS   94 (95)
T ss_dssp             EEEEECSSCBCCCC
T ss_pred             EEEEEeCCccCCCC
Confidence            99999999999986

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=7.2e-14  Score=107.31  Aligned_cols=86  Identities=21%  Similarity=0.317  Sum_probs=70.4

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEe-ecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      |..++..|+...+.+|+++.|.|.+. +.|.+.+.|+|++..+.......   .+++|.|.+++.+|+|.|+|.|.|..|
T Consensus         2 ~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1gl4b_           2 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD---FNGILTIRNVQPSDAGTYVCTGSNMFA   78 (89)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE---ETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe---eceEEEEecCCcccCEEEEEEEEECCC
Confidence            44555667888999999999999996 67888999999988876543322   245899999999999999999999998


Q ss_pred             eeEEEEEEEEE
Q psy11701        112 EAKSYSIDLSV  122 (745)
Q Consensus       112 ~~~~~~~~l~V  122 (745)
                      ... ..+.|.|
T Consensus        79 ~~~-~~~~l~V   88 (89)
T d1gl4b_          79 MDQ-GTATLHV   88 (89)
T ss_dssp             EEE-EEEEEEE
T ss_pred             EEE-EEEEEEE
Confidence            765 6677776

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3e-14  Score=110.89  Aligned_cols=79  Identities=16%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             cCCceEEEEeeCCCCCCC-ceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701        515 LGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE  593 (745)
Q Consensus       515 ~~~~~i~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~  593 (745)
                      .+.++|+|+|++|...|| +|++|.|+|+..+...+....       .....++++.+|.|++.|.|+|.|.|..|.|++
T Consensus        14 ~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~-------~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~   86 (97)
T d2crza1          14 PKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVY-------QGSEVECTVSSLLPGKTYSFRLRAANKMGFGPF   86 (97)
T ss_dssp             CCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEE-------EESCSEEEEESCCTTCEEEECCEEECSSCBCCC
T ss_pred             eeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEee-------cCCceEEEEcCCCCCEEEEEEEEEecCCeEcCC
Confidence            467899999999876555 899999999987665443322       345678999999999999999999999999999


Q ss_pred             cceeeec
Q psy11701        594 SKYLFYV  600 (745)
Q Consensus       594 S~~~~~~  600 (745)
                      |+.+...
T Consensus        87 S~~~~~~   93 (97)
T d2crza1          87 SEKCDIT   93 (97)
T ss_dssp             CCCEEEE
T ss_pred             cCCCeEE
Confidence            9876544

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-14  Score=130.68  Aligned_cols=182  Identities=12%  Similarity=0.019  Sum_probs=77.5

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV  480 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V  480 (745)
                      .|.+|.++.+.. .+.+++.|+|+++.  ..+|.+.+|.|+|.........        ..........+.+.+.|.+++
T Consensus         2 ~Ps~P~~~~~~~-~s~~si~vsW~pP~--~~ng~i~~Y~V~~~~~~~~~~~--------~~~~~~~~~~~~~~~~y~~~v   70 (196)
T d2dtge2           2 NPSVPLDPISVS-NSSSQIILKWKPPS--DPNGNITHYLVFWERQAEDSEL--------FELDYCLKGLKLPSRTWSPPF   70 (196)
T ss_dssp             CCCCCEEEEEEE-CSSSCEEEEEECCC--CSSSSCSEEECCEEEECCCCSC--------TTCSSSCSCCCCCC-------
T ss_pred             cCcCCcCCEEEe-ccCCEEEEEEECCC--CCCCcEEEEEEEEEcCCCCCce--------eEEeeEEeccccceeEEEEEE
Confidence            478999999988 89999999999853  4578899999988766543221        111222233466788999999


Q ss_pred             EEecCCCCCCCCcceEEeCCCCCC-------CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcc
Q psy11701        481 LAFNGAYNGPPSEIISFVTPEGVP-------GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLL  553 (745)
Q Consensus       481 ~a~n~~G~g~~S~~~~~~t~~~~P-------~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~  553 (745)
                      .|.|..|.+..+...........+       ..+..+.+.......+.+.|..+.........|.+.+........  ..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  148 (196)
T d2dtge2          71 ESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHR--PF  148 (196)
T ss_dssp             -------------------------------------------------------------------------CCS--CS
T ss_pred             EEEcCCccccCcCCccceecCCCCccccccccCCcCcEEEeccCCceeecccCcCCCccceEEEEEEeecCCCccE--EE
Confidence            999998887766544443322222       233344444445556666776654322222223333322222111  11


Q ss_pred             cccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        554 ERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       554 ~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                           .......+++|.+|.|++.|.|+|.|+|..|.|.++.....+
T Consensus       149 -----~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~  190 (196)
T d2dtge2         149 -----EKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYV  190 (196)
T ss_dssp             -----CEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCE
T ss_pred             -----EeccceEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceE
Confidence                 114566899999999999999999999999999875444333

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.48  E-value=1e-13  Score=105.36  Aligned_cols=83  Identities=17%  Similarity=0.215  Sum_probs=67.7

Q ss_pred             EeeccceeEecCCcEEEEEEEeec-CCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS  115 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~  115 (745)
                      +++++...+.+|++++|.|.+.+. |.+.+.|+|||+.+..      ...+..|.|.+++.+|+|.|+|.|.|..|...+
T Consensus         4 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S   77 (88)
T d2fcba2           4 VLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSS   77 (88)
T ss_dssp             EEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc------cccccccccCccCHHHCCeEEEEEEeCCCCEEe
Confidence            345556678999999999999655 5669999999988742      234568999999999999999999999888777


Q ss_pred             EEEEEEEEec
Q psy11701        116 YSIDLSVLAA  125 (745)
Q Consensus       116 ~~~~l~V~~~  125 (745)
                      ..+.|.|..|
T Consensus        78 ~~v~l~V~~P   87 (88)
T d2fcba2          78 KPVTITVQAP   87 (88)
T ss_dssp             CCEEEEECCC
T ss_pred             eeEEEEEeCC
Confidence            7788888654

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.48  E-value=8.8e-14  Score=110.56  Aligned_cols=92  Identities=13%  Similarity=0.139  Sum_probs=74.6

Q ss_pred             CCC-CCCCceeEEEcCCceEEEEeeCCC--CCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccE
Q psy11701        502 GVP-GTVQSLEAIPLGSSAFYLKWVKPE--QPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY  578 (745)
Q Consensus       502 ~~P-~~p~~~~~~~~~~~~i~l~W~~p~--~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y  578 (745)
                      ++| .+|.++++...+.++|.|+|+++.  +.+|+|.+|.|+|+..+.........    +.+....++.|.+|.|++.|
T Consensus         2 ~~P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~----~~~~~~~~~~i~~L~p~t~Y   77 (105)
T d1cfba2           2 DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNN----IFDWRQNNIVIADQPTFVKY   77 (105)
T ss_dssp             CCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEE----ECCTTCCEEEECSCCSSCEE
T ss_pred             CCCCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEE----ecCCCccEEEECCCCCCCEE
Confidence            345 578999999999999999999754  57889999999999876543322221    23566789999999999999


Q ss_pred             EEEEEEEecCCCCCCccee
Q psy11701        579 RIHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       579 ~~~V~a~n~~G~g~~S~~~  597 (745)
                      .|+|.|+|..|.|++|...
T Consensus        78 ~~~V~A~N~~G~gp~S~~~   96 (105)
T d1cfba2          78 LIKVVAINDRGESNVAAEE   96 (105)
T ss_dssp             EEEEEEEETTEECSSCCCC
T ss_pred             EEEEEEEeCCcCCCCCCCc
Confidence            9999999999999997643

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.8e-14  Score=111.71  Aligned_cols=93  Identities=15%  Similarity=0.178  Sum_probs=73.8

Q ss_pred             CCCCCCceeEEEcCCceEEEEeeCCCCCC-CceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPN-GVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       503 ~P~~p~~~~~~~~~~~~i~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      +|++|.++.+..++.++|.|+|++|.+.+ .+|.+|.++|+......+....     ........+.+.+|.|++.|+|+
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~L~p~t~Y~fr   76 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKAN-----FSNILENEFTVSGLTEDAAYEFR   76 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECC-----CSCCCSSEEEECSCCSSCCEEEE
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEE-----eeccceeEEEEcCCCCCCEEEEE
Confidence            56777888888889999999999987544 4899999999987665443322     12456688999999999999999


Q ss_pred             EEEEecCCC-CCCcceeeec
Q psy11701        582 LAGYTKAGD-GAESKYLFYV  600 (745)
Q Consensus       582 V~a~n~~G~-g~~S~~~~~~  600 (745)
                      |.|+|.+|. |++|.....+
T Consensus        77 V~A~n~~G~~s~~S~~s~~v   96 (104)
T d1bpva_          77 VIAKNAAGAISPPSEPSDAI   96 (104)
T ss_dssp             EEEECTTSCEEEEEEEEEEE
T ss_pred             EEEEECCCCCCCCcCCCCCE
Confidence            999999997 7777665433

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.47  E-value=4.8e-14  Score=110.15  Aligned_cols=89  Identities=21%  Similarity=0.259  Sum_probs=72.6

Q ss_pred             CCeeEeeccceeEecC---CcEEEEEEEeecCCCeeEEEECCEecCCCCC-eEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         33 PKQQYVTRKKEVALRN---KKVELFCIFGGTPLPQTIWSKDGVPINPSDR-ISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G---~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      ++.|+..|.+..+.+|   ++++|.|.+.|.|.|.++|+|||.+|..... ......+..|.|..++.+|+|.|+|.|.|
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N   83 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN   83 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEE
Confidence            3556788899888877   7899999999999999999999999976433 22234456788888999999999999999


Q ss_pred             CCeeeEEEEEEEE
Q psy11701        109 GVGEAKSYSIDLS  121 (745)
Q Consensus       109 ~~g~~~~~~~~l~  121 (745)
                      ..|...+..+.|.
T Consensus        84 ~~G~~~S~~a~L~   96 (97)
T d1cs6a1          84 ARGTVVSREASLR   96 (97)
T ss_dssp             TTEEEECCCEEEE
T ss_pred             CCCEEEEEEEEEe
Confidence            9998876666664

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-13  Score=106.77  Aligned_cols=87  Identities=28%  Similarity=0.501  Sum_probs=72.7

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEE
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG  584 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a  584 (745)
                      ++|.++.+...+.++|.|+|++|.   +.+.+|.|+|+...........     . ......+.+.+|.|++.|.|+|.|
T Consensus         3 ~aP~n~~~~~~s~~si~l~W~~p~---~~~~~Y~i~y~~~~~~~~~~~~-----~-~~~~~~~~i~~L~p~t~Y~~~V~A   73 (92)
T d1qg3a1           3 GAPQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHL-----L-DSKVPSVELTNLYPYCDYEMKVCA   73 (92)
T ss_dssp             CCCEEEEEEECSTTCEEEEEECCS---SCCCEEEEEEEETTSCGGGCEE-----E-EESSSEEEECSCCTTCEEEEEEEE
T ss_pred             CcCCCCEEEEccCCEEEEEEEecC---CCccceEEeeeeccccccEEEE-----e-cCCccEEEECCCCCCcEEEEEEEE
Confidence            578999999999999999999874   5789999999987655433222     1 456689999999999999999999


Q ss_pred             EecCCCCCCcceeeec
Q psy11701        585 YTKAGDGAESKYLFYV  600 (745)
Q Consensus       585 ~n~~G~g~~S~~~~~~  600 (745)
                      +|..|.|++|..+.+.
T Consensus        74 ~n~~G~g~~S~~~~~~   89 (92)
T d1qg3a1          74 YGAQGEGPYSSLVSCR   89 (92)
T ss_dssp             ECSSCBCCCCCCEEEE
T ss_pred             EeCCcCcCCCCCEEEE
Confidence            9999999999877554

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.47  E-value=8.3e-14  Score=105.96  Aligned_cols=82  Identities=17%  Similarity=0.241  Sum_probs=67.0

Q ss_pred             EeeccceeEecCCcEEEEEEEee-cCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGG-TPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS  115 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~  115 (745)
                      +++++...|.+|++++|.|.+.+ .|.+++.|+|||+.+..      ...+..|.|.+++.+|+|.|+|.|.|..|...+
T Consensus         6 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S   79 (89)
T d1fnla2           6 LLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSS   79 (89)
T ss_dssp             EEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------EEECCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce------eccccccEECccceeccceEEEEEEeCCCCeEE
Confidence            34566677999999999999964 46669999999987642      233457999999999999999999999888777


Q ss_pred             EEEEEEEEe
Q psy11701        116 YSIDLSVLA  124 (745)
Q Consensus       116 ~~~~l~V~~  124 (745)
                      ..+.|.|.+
T Consensus        80 ~~v~itV~E   88 (89)
T d1fnla2          80 ETVNITITQ   88 (89)
T ss_dssp             CCEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            778888865

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.9e-13  Score=102.82  Aligned_cols=81  Identities=26%  Similarity=0.521  Sum_probs=67.4

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      |.|...|.+..+.+|+++.|.|.+.|.|.| +|+|+|||..+....        .+.+.|.....+|+|.|+|.|.|..|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~--------~~~~~l~~~~~~d~G~Y~C~A~N~~G   73 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA--------PSPSVLNVTGVTQSTMFSCEAHNLKG   73 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE--------ESSEEEEECCCSSCEEEEEEEEETTE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC--------CcceEEecCCccccEEEEEEEEcCCC
Confidence            788999999999999999999999999987 999999999887422        23456667777899999999999999


Q ss_pred             eEEE-EEEEEE
Q psy11701        205 YVYK-DVYVNV  214 (745)
Q Consensus       205 ~~~~-~~~l~v  214 (745)
                      ...+ .+.|.|
T Consensus        74 ~~~S~~~~v~V   84 (85)
T d1rhfa2          74 LASSRTATVHL   84 (85)
T ss_dssp             EEECCCEEEEE
T ss_pred             cEEEEEEEEEE
Confidence            7543 466665

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.7e-13  Score=105.76  Aligned_cols=88  Identities=18%  Similarity=0.371  Sum_probs=71.2

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC-CeeEEEE-CCEecCC-CCCeEec---cCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL-PQTIWSK-DGVPINP-SDRISQG---NYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~-~~v~W~~-~~~~i~~-~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      +.+.|.+..+.+|+++.|.|.+.|.|. +++.|+| ++..+.. ..++...   ...++|.|.+++.+|+|.|+|.|.|.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            456788899999999999999999985 6999999 5665554 3454432   33458999999999999999999999


Q ss_pred             CeeeEEEEEEEEEE
Q psy11701        110 VGEAKSYSIDLSVL  123 (745)
Q Consensus       110 ~g~~~~~~~~l~V~  123 (745)
                      .|...+.++.|.|.
T Consensus        83 ~G~~~~~tv~l~V~   96 (97)
T d1epfa1          83 DGTQSEATVNVKIF   96 (97)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            98877677888875

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.1e-13  Score=106.73  Aligned_cols=90  Identities=17%  Similarity=0.174  Sum_probs=74.1

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCC-CCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPE-QPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      ++|.+|.+|++...+.++|.|+|++|. ..++.+.+|.|+|+..+.....          ....++++|.+|+|++.|.|
T Consensus         1 a~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~~~~----------~~~~t~~~i~~L~p~t~Y~~   70 (94)
T d1x5aa1           1 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ----------MVLEPRVLLTKLQPDTTYIV   70 (94)
T ss_dssp             CCCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCEEEE----------EESSSEEEEESCCSSCEEEE
T ss_pred             CcCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCceEEE----------eeccCEEEECCCCCCCEEEE
Confidence            368889999999999999999999985 4556778999999876543211          12357899999999999999


Q ss_pred             EEEEEecCCCCCCcceeeecc
Q psy11701        581 HLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       581 ~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      +|.|+|..|.|++|+.+.+.+
T Consensus        71 rV~A~n~~G~g~~S~~~~~~T   91 (94)
T d1x5aa1          71 RVRTLTPLGPGPFSPDHEFRT   91 (94)
T ss_dssp             EEEEECSSSCCCCCCCEEEEC
T ss_pred             EEEEEcCCcCcCCCCCEEEEe
Confidence            999999999999998765553

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.46  E-value=1.6e-13  Score=106.90  Aligned_cols=83  Identities=28%  Similarity=0.506  Sum_probs=70.3

Q ss_pred             ceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce--eecCceEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy11701        133 EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR--KVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDV  210 (745)
Q Consensus       133 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~  210 (745)
                      ....+.+|+++.|.|.+.|.|.+.++|+|||..+.........  ....+.|.|.++..+|+|.|+|.|.|..|.....+
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   92 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   92 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEE
Confidence            3456789999999999999999999999999999754433332  23457999999999999999999999999998888


Q ss_pred             EEEEe
Q psy11701        211 YVNVL  215 (745)
Q Consensus       211 ~l~v~  215 (745)
                      .|.|+
T Consensus        93 ~l~Vl   97 (97)
T d3dara1          93 HLDVV   97 (97)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88874

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.2e-14  Score=112.47  Aligned_cols=86  Identities=27%  Similarity=0.406  Sum_probs=71.4

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      .+|++|.++++.. ..++|.|+|.+|.+.||+|.+|.|+|+..+...+..       ......+.|+|.+|.|++.|.|+
T Consensus        19 ~vP~~P~~~~~~~-~~~si~v~W~~p~~~~g~i~~Y~i~~~~~~~~~~~~-------~~~~~~~~~~i~~L~p~t~Y~~~   90 (113)
T d1x5ia1          19 RVPEVPSSLHVRP-LVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTI-------KVDYKQRYYTIENLDPSSHYVIT   90 (113)
T ss_dssp             SCCCSCSEEEEEE-ETTEEEEEEECCSCTTBCCCEEEEEECSSCGGGEEE-------ECCTTCCEEEECSCCSSCEECCE
T ss_pred             CCCCCCEeeeeee-CCCEEEEEEEccccCCccEEEEEEEeeeccccceee-------eeeCCccEEEEeccccCcEEEEE
Confidence            4788999999876 567999999999988999999999998655433221       12567789999999999999999


Q ss_pred             EEEEecCCCCCCcc
Q psy11701        582 LAGYTKAGDGAESK  595 (745)
Q Consensus       582 V~a~n~~G~g~~S~  595 (745)
                      |.|.|..|.|+++.
T Consensus        91 V~A~n~~G~g~~~~  104 (113)
T d1x5ia1          91 LKAFNNVGEGIPLY  104 (113)
T ss_dssp             EEEECSSCBCCCCC
T ss_pred             EEEECCCcCCCCee
Confidence            99999999998743

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=8.1e-14  Score=114.51  Aligned_cols=101  Identities=10%  Similarity=0.171  Sum_probs=77.2

Q ss_pred             CCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccc----------cccCCCcceee
Q psy11701        499 TPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP----------YISDPTTTSAK  568 (745)
Q Consensus       499 t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~  568 (745)
                      +.+++|++|.++++.. +.++|.|+|++|.+.+|+|++|.|+|+...............          ....+....+.
T Consensus         3 ~~~~~P~aP~~v~v~~-~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (123)
T d1wfta_           3 SGSSGPGAPSTVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANA   81 (123)
T ss_dssp             CSSSCCCCCEEEEEEE-CSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTC
T ss_pred             CCCCCCcCCcccEEEe-CCCEEEEEecCchhcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEE
Confidence            5568899999999876 678999999999988999999999998876543322111000          00123346778


Q ss_pred             ecCCCCCccEEEEEEEEecCCCCCCcceeeec
Q psy11701        569 LAGLEPSTKYRIHLAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       569 l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~  600 (745)
                      |.+|+|++.|.|+|+|.|.+|.|++|+.....
T Consensus        82 i~~L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~  113 (123)
T d1wfta_          82 HIDYTSRPAIVFRISAKNEKGYGPATQIRWLQ  113 (123)
T ss_dssp             CCBCSSSCEEEEEEEEBSSSSBCCCEEEEEEC
T ss_pred             EcCCCCCCEEEEEEEEecCCcCCCCCCcEEEE
Confidence            89999999999999999999999998765443

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.46  E-value=7.9e-14  Score=108.33  Aligned_cols=84  Identities=20%  Similarity=0.352  Sum_probs=72.2

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .|.|...|.+..+.+|+++.|.|.+.|.|.+ .+.|++||..+.............++|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence            5788889999999999999999999998866 799999999987655444444566799999999999999999999999


Q ss_pred             ceEEE
Q psy11701        204 GYVYK  208 (745)
Q Consensus       204 g~~~~  208 (745)
                      |...+
T Consensus        82 G~~~s   86 (94)
T d1biha1          82 GVASS   86 (94)
T ss_dssp             EEEEC
T ss_pred             CEEEE
Confidence            97543

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-14  Score=111.97  Aligned_cols=87  Identities=23%  Similarity=0.223  Sum_probs=71.9

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCE-EEEEEEEeCCeee
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQG-SYTCEVSNGVGEA  113 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~g~~  113 (745)
                      .+...+++..+.+|+++.|.|.+.|.|.|.+.|++++..+....+.........|.|.+++.+|.| .|+|.|.|..|..
T Consensus         4 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~   83 (92)
T d2ifga1           4 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA   83 (92)
T ss_dssp             EEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEEC
T ss_pred             EEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEE
Confidence            445677889999999999999999999999999999988765444333444568999999999999 7999999999987


Q ss_pred             EEEEEEEEE
Q psy11701        114 KSYSIDLSV  122 (745)
Q Consensus       114 ~~~~~~l~V  122 (745)
                      . .++.|.|
T Consensus        84 ~-~s~~l~V   91 (92)
T d2ifga1          84 E-VSVQVNV   91 (92)
T ss_dssp             C-EEECCCC
T ss_pred             E-EEEEEEE
Confidence            6 5566654

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.2e-13  Score=106.39  Aligned_cols=79  Identities=15%  Similarity=0.193  Sum_probs=66.3

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC--eEeccCCcEEEEccCCCCCCEEEEEEEEeCCee
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGE  112 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~  112 (745)
                      .|...|++..+.+|+++.|.|.+.|.|.|.++|+|++..+....+  +.. ..+++|.|.+++.+|+|.|+|.|.|..+.
T Consensus         3 ~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   81 (92)
T d1epfa2           3 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV-LSNNYLQIRGIKKTDEGTYRCEGRILARG   81 (92)
T ss_dssp             EEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEE-CTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             EEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeee-eeeeeEEECCCCHHhCEEEEEEEEECcCC
Confidence            466788999999999999999999999999999999998876543  333 33457999999999999999999997554


Q ss_pred             eE
Q psy11701        113 AK  114 (745)
Q Consensus       113 ~~  114 (745)
                      ..
T Consensus        82 ~~   83 (92)
T d1epfa2          82 EI   83 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.45  E-value=2.1e-14  Score=110.60  Aligned_cols=88  Identities=23%  Similarity=0.445  Sum_probs=73.5

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCce-eecCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRR-KVGPNRITIENLRKSDTGNYGCNATNSLGYV  206 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~  206 (745)
                      |...|.+..+.+|+++.|.|.+.|.|.|.+.|+++|..+......... ....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   81 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence            445688899999999999999999999999999999988754432212 2235689999999999999999999999998


Q ss_pred             EEEEEEEEe
Q psy11701        207 YKDVYVNVL  215 (745)
Q Consensus       207 ~~~~~l~v~  215 (745)
                      ...+.|.|.
T Consensus        82 ~~~~~l~V~   90 (91)
T d1tnna_          82 EAEFTLTIQ   90 (91)
T ss_dssp             CEEEEEECC
T ss_pred             EEEEEEEEE
Confidence            888888774

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.44  E-value=8.9e-14  Score=110.99  Aligned_cols=91  Identities=18%  Similarity=0.243  Sum_probs=64.7

Q ss_pred             CCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcc-cCCcc------cccccccCCCcceeeecCCCCCccEE
Q psy11701        507 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK-VGPLL------ERLPYISDPTTTSAKLAGLEPSTKYR  579 (745)
Q Consensus       507 p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~l~~L~p~t~Y~  579 (745)
                      |..+.+..++.++|.|+|.+|.++|++|++|.|+|+..+... |....      .............++|.+|.|++.|+
T Consensus         3 P~~p~v~~~~~~sv~l~W~~P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   82 (107)
T d2ic2a1           3 PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYR   82 (107)
T ss_dssp             CCCCEEEECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEEEE
T ss_pred             CcCCEEEEEECCEEEEEEEeCccccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcEEE
Confidence            445567888999999999999988889999999998765331 11100      00011123455789999999999999


Q ss_pred             EEEEEEecCCCCCCccee
Q psy11701        580 IHLAGYTKAGDGAESKYL  597 (745)
Q Consensus       580 ~~V~a~n~~G~g~~S~~~  597 (745)
                      |||.|.|..|.|++|...
T Consensus        83 frV~A~N~~G~s~~S~~s  100 (107)
T d2ic2a1          83 FRILAVYSNNDNKESNTS  100 (107)
T ss_dssp             EEEEEEETTSCEEECCCC
T ss_pred             EEEEEEcCCCCCCCCCCC
Confidence            999999999999987654

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.7e-14  Score=109.04  Aligned_cols=91  Identities=19%  Similarity=0.246  Sum_probs=73.1

Q ss_pred             CCCCCceeEEEcCCceEEEEeeCCCCCCC-ceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEE
Q psy11701        504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHL  582 (745)
Q Consensus       504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V  582 (745)
                      |++|.++++...+.++|.|+|++|...+| .+.+|.++|+..+...+....      .....++|+|.+|+|++.|.|+|
T Consensus         1 P~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~------~~~~~~~~~v~~L~p~t~Y~~rV   74 (96)
T d1x5xa1           1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPK------YDGEDLAYTVKNLRRSTKYKFKV   74 (96)
T ss_dssp             CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEE------EEESCSEEEEESCCSSCEEEEEE
T ss_pred             CccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEe------ecCCCCEEEECCCCCCCEEEEEE
Confidence            67788889999999999999999876554 788899988876554333222      14456889999999999999999


Q ss_pred             EEEecCCCCCCcceeeec
Q psy11701        583 AGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       583 ~a~n~~G~g~~S~~~~~~  600 (745)
                      .|+|..|.|++|..+...
T Consensus        75 ~A~n~~G~s~~S~~~~~~   92 (96)
T d1x5xa1          75 IAYNSEGKSNPSEVVEFT   92 (96)
T ss_dssp             EEECSSCEEEECCCEEEE
T ss_pred             EEEcCCcEeCCCCCEEEE
Confidence            999999999998776544

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3.4e-13  Score=103.44  Aligned_cols=81  Identities=23%  Similarity=0.305  Sum_probs=69.5

Q ss_pred             cCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        131 EPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      .|....+.+|+++.|.|.+. +.|.+.+.|+|++..+...    .....++.|.|.++..+|+|.|+|.|.|..|.....
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~   83 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS----RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT   83 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT----TEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc----ccEeeceEEEEecCCcccCEEEEEEEEECCCEEEEE
Confidence            46778899999999999997 5778899999998876532    345567899999999999999999999999998888


Q ss_pred             EEEEEe
Q psy11701        210 VYVNVL  215 (745)
Q Consensus       210 ~~l~v~  215 (745)
                      +.|.|.
T Consensus        84 ~~l~V~   89 (89)
T d1gl4b_          84 ATLHVQ   89 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888773

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.9e-13  Score=108.69  Aligned_cols=95  Identities=17%  Similarity=0.169  Sum_probs=70.2

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEE
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG  584 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a  584 (745)
                      ..|..+.+...+.++|.|+|.+|.+.++.+.+|.|+|+............    ...+...+|.|.+|.|++.|+|+|+|
T Consensus         8 ~~P~~p~~~~~~~~~v~l~W~pp~~~~~~~~~y~i~y~~~~~~~~~~~~~----~~~~~~~~~~i~~L~p~t~Y~frVra   83 (105)
T d2d9qb2           8 TMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVG----PLPLEALQYELCGLLPATAYTLQIRC   83 (105)
T ss_dssp             ECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEE----EECSCEEEEEECSCCSCCCEEEEEEE
T ss_pred             CCCCCCEeecCCCCeEEEEEcCCCCCCceeEEEEEEEEecCCccceeeee----cccCCcceeEEecccCCeEEEEEEEE
Confidence            45677788888999999999999888889999999999765543332222    22556788999999999999999999


Q ss_pred             EecCCCCCCcceeeecccC
Q psy11701        585 YTKAGDGAESKYLFYVPFK  603 (745)
Q Consensus       585 ~n~~G~g~~S~~~~~~~~~  603 (745)
                      .|..|.|.+|+++..+...
T Consensus        84 ~n~~g~G~~S~wS~~~~~~  102 (105)
T d2d9qb2          84 IRWPLPGHWSDWSPSLELR  102 (105)
T ss_dssp             EECSSCCCCCCCCCCEEEC
T ss_pred             EeCCCCCCCcCCCCCEEEe
Confidence            9999999998876554443

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.6e-13  Score=102.26  Aligned_cols=74  Identities=15%  Similarity=0.219  Sum_probs=65.5

Q ss_pred             eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN  213 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~  213 (745)
                      +..+.+|++++|.|.+.|.|.|.+.|++++..+.         .....|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~---------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~   78 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI---------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV   78 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE---------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccce---------eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEE
Confidence            4468999999999999999999999999765433         4567899999999999999999999999999999998


Q ss_pred             Eee
Q psy11701        214 VLA  216 (745)
Q Consensus       214 v~~  216 (745)
                      |+.
T Consensus        79 V~~   81 (84)
T d2nxyb2          79 VLA   81 (84)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            875

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=3e-13  Score=106.80  Aligned_cols=96  Identities=15%  Similarity=0.249  Sum_probs=78.2

Q ss_pred             CCCCCCceeEEEcCCceEEEEeeCC--CCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        503 VPGTVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       503 ~P~~p~~~~~~~~~~~~i~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      ++.+|.++.+..++.++|.|+|+++  ...+|.|.+|.|+|+..+......+...   .......+++|.+|.|++.|.|
T Consensus         1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~---~~~~~~~~~~i~~L~p~t~Y~~   77 (101)
T d1x4ya1           1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD---MVEGDRYWHSISHLQPETSYDI   77 (101)
T ss_dssp             CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCE---EEETTCCEEEECSCCTTCEEEE
T ss_pred             CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEE---EEcCCeeEEEEcCCCCCCEEEE
Confidence            4578899999999999999999865  3567899999999998766544433321   1255668899999999999999


Q ss_pred             EEEEEecCCCCCCcceeeecc
Q psy11701        581 HLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       581 ~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      +|.|+|..|.|++|+.+...+
T Consensus        78 ~v~a~n~~G~s~~S~~~~~~T   98 (101)
T d1x4ya1          78 KMQCFNEGGESEFSNVMICET   98 (101)
T ss_dssp             EEEEECTTCCCCCCCCEEEEC
T ss_pred             EEEEEcCCCCCCCCCcEEEEc
Confidence            999999999999998776553

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.43  E-value=1.9e-13  Score=109.89  Aligned_cols=91  Identities=25%  Similarity=0.339  Sum_probs=69.1

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC----CC--CeE---------eccCCcEEEEccCC
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP----SD--RIS---------QGNYGKSLIIKHVE   95 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~----~~--~~~---------~~~~~~~L~i~~~~   95 (745)
                      .+|.++...|++..+.+|++++|.|.+.|.|.|.|.|+|++.....    ..  ...         .......|.|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            4567766668999999999999999999999999999997654321    11  111         11123579999999


Q ss_pred             CCCCEEEEEEEEeCCeeeEEEEEEEEE
Q psy11701         96 FSDQGSYTCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~~~~~~~~l~V  122 (745)
                      .+|+|.|+|.|.|..|... .++.|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~-~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISF-HSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEE-EEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEE-EEEEEEE
Confidence            9999999999999999887 5677776

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.1e-13  Score=102.91  Aligned_cols=86  Identities=15%  Similarity=0.241  Sum_probs=68.1

Q ss_pred             CeEEecC-ceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        126 PYFTVEP-EFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       126 p~~~~~~-~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      |.+...| ....+.+|+++.|.|.+. +.|.+.|+|++++..+..    .......+.|.|.+++.+|+|.|+|.|+|..
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~   78 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGG   78 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC----EEEESSEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee----eeccCceeeEEcCccChhhCCcEEEEEEeCC
Confidence            3333444 457788999999999985 788999999998766531    1223345789999999999999999999999


Q ss_pred             ceEEEEEEEEEe
Q psy11701        204 GYVYKDVYVNVL  215 (745)
Q Consensus       204 g~~~~~~~l~v~  215 (745)
                      |....++.|.|.
T Consensus        79 g~~~~s~~l~Vy   90 (90)
T d1gsma1          79 RTFQHTVQLLVY   90 (90)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEC
Confidence            998888888874

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.41  E-value=2.6e-13  Score=105.88  Aligned_cols=88  Identities=28%  Similarity=0.515  Sum_probs=72.6

Q ss_pred             cCeEEecCceeEeeCC---CeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEe
Q psy11701        125 APYFTVEPEFINAAEE---ETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G---~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      +|.|...|.+..+.+|   +++.|.|.+.|.|.+.++|++||..+...............|.|..+..+|+|.|+|.|.|
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N   83 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN   83 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEE
Confidence            6888888988888766   7999999999999999999999999976654444444566788888999999999999999


Q ss_pred             CCceEEE-EEEE
Q psy11701        202 SLGYVYK-DVYV  212 (745)
Q Consensus       202 ~~g~~~~-~~~l  212 (745)
                      ..|...+ .+.|
T Consensus        84 ~~G~~~S~~a~L   95 (97)
T d1cs6a1          84 ARGTVVSREASL   95 (97)
T ss_dssp             TTEEEECCCEEE
T ss_pred             CCCEEEEEEEEE
Confidence            9997643 4554

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.4e-13  Score=106.60  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=69.8

Q ss_pred             CCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      |.+|.+|++..++.+++.|+|++|.   +.+.+|.|+|+..++..+...      + .++..++.|.+|.|++.|.|+|.
T Consensus         1 P~~P~~l~~~~~t~~si~l~W~~p~---~~i~~Y~v~~~~~~~~~~~~~------~-~~~~~~~~l~~L~p~t~Y~~~V~   70 (102)
T d2cuha1           1 PDGPTQLRALNLTEGFAVLHWKPPQ---NPVDTYDIQVTAPGAPPLQAE------T-PGSAVDYPLHDLVLHTNYTATVR   70 (102)
T ss_dssp             CSSCEEEECCCCSSSCEEEEEECCS---SCCSEEEEEEECSSSCCEEEE------E-ETTCSEEEECSCCSSSEEEEEEE
T ss_pred             CcCCCccEEEEeCCCEEEEEEEeee---ccceeeEEEEEeccccceeee------e-eeeeeeEEEccEEeeEEEEEEEE
Confidence            6788999999999999999999874   579999999987654332211      2 55678999999999999999999


Q ss_pred             EEecCCCCCCcceee
Q psy11701        584 GYTKAGDGAESKYLF  598 (745)
Q Consensus       584 a~n~~G~g~~S~~~~  598 (745)
                      |++..|.|.++....
T Consensus        71 a~~~~~~s~~~~~~~   85 (102)
T d2cuha1          71 GLRGPNLTSPASITF   85 (102)
T ss_dssp             EEETTEECCCEEEEE
T ss_pred             EEeCCCCcCCEEEEE
Confidence            999999998865443

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.1e-13  Score=108.93  Aligned_cols=93  Identities=18%  Similarity=0.137  Sum_probs=73.9

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      ..|+||.++.+.. +.++|.|+|++|.+.+++|.+|.|+|+..+.. +.....    ......+.|++.+|.|++.|.|+
T Consensus         6 s~~sPP~~~~~~~-t~~si~l~W~pp~~~~~~i~~Y~v~~~~~~~~-~~~~~~----~~~~~~~~~~i~~L~p~t~Y~~r   79 (108)
T d1v5ja_           6 SGLSPPRGLVAVR-TPRGVLLHWDPPELVPKRLDGYVLEGRQGSQG-WEVLDP----AVAGTETELLVPGLIKDVLYEFR   79 (108)
T ss_dssp             CCCCCCEEEEEEE-CSSSEEEEEECCSCCSSCCCBEEEEEEETTCC-CEEEEE----EECSSCCEEECCCCCTTSCEECC
T ss_pred             CCCCcCCCeEEEE-cCCEEEEEEEecccCCCceeEEEEEeeeeeee-eeeccc----cccceeeeEEEEeccCCcEEEEE
Confidence            4567889998755 77899999999988888999999999976543 222211    11556789999999999999999


Q ss_pred             EEEEecCCCCCCcceeeec
Q psy11701        582 LAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       582 V~a~n~~G~g~~S~~~~~~  600 (745)
                      |+|+|..|.|++|..+.+.
T Consensus        80 V~A~n~~g~s~~S~~~~~~   98 (108)
T d1v5ja_          80 LVAFAGSFVSDPSNTANVS   98 (108)
T ss_dssp             BEEEETTEEEEECSCCCCC
T ss_pred             EEEEeCCCEeCCcCceEEE
Confidence            9999999999998765433

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.8e-13  Score=110.30  Aligned_cols=93  Identities=16%  Similarity=0.175  Sum_probs=77.0

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      +.|++|.++++...+.++|.|+|++|.+.++.|..|.++|+............    ........+.+.+|+|++.|.|+
T Consensus        15 d~P~~P~~~~v~~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~L~p~t~Y~fr   90 (127)
T d1ueya_          15 DVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQ----TEVSGTQTTAQLNLSPYVNYSFR   90 (127)
T ss_dssp             CSCCCCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEE----EEEESSCCEEEECCCTTCEECCE
T ss_pred             ccCcCCCCcEEEEecCCeEEEEEeCCcccccceEeeeeeeccccccceeEEEE----eecCCceEEEECCCccCCEEEEE
Confidence            67899999999999999999999999988899999999998765543332221    11345678999999999999999


Q ss_pred             EEEEecCCCCCCcceee
Q psy11701        582 LAGYTKAGDGAESKYLF  598 (745)
Q Consensus       582 V~a~n~~G~g~~S~~~~  598 (745)
                      |.|+|..|.|.+|..+.
T Consensus        91 V~A~n~~G~s~~S~~s~  107 (127)
T d1ueya_          91 VMAVNSIGKSLPSEASE  107 (127)
T ss_dssp             EEEEESSCBCCCCSCCC
T ss_pred             EEEEcCCcCcCCcCCcc
Confidence            99999999999887643

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.41  E-value=4.5e-13  Score=106.39  Aligned_cols=101  Identities=15%  Similarity=0.135  Sum_probs=82.5

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .|+.+|.++++.. .+.+++.|+|+++++...+|.+.+|.|.|+....... +....+......+++|.+|.+++.|.|+
T Consensus         3 ~P~~~P~~v~~~~-~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   80 (105)
T d1cfba2           3 VPFKNPDNVVGQG-TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAA-WENNNIFDWRQNNIVIADQPTFVKYLIK   80 (105)
T ss_dssp             CCSCCCSCCEEEC-SSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCC-CEEEEECCTTCCEEEECSCCSSCEEEEE
T ss_pred             CCCCCCcCeEEEE-ccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccc-eeEEEecCCCccEEEECCCCCCCEEEEE
Confidence            4667899999987 8889999999998788889999999999987765433 3444443667789999999999999999


Q ss_pred             EEEecCCCCCCCCcc-eEEeCCCC
Q psy11701        480 VLAFNGAYNGPPSEI-ISFVTPEG  502 (745)
Q Consensus       480 V~a~n~~G~g~~S~~-~~~~t~~~  502 (745)
                      |+|+|..|.|++|.. +...+.++
T Consensus        81 V~A~N~~G~gp~S~~~v~~~t~Ed  104 (105)
T d1cfba2          81 VVAINDRGESNVAAEEVVGYSGED  104 (105)
T ss_dssp             EEEEETTEECSSCCCCEEEESSSC
T ss_pred             EEEEeCCcCCCCCCCcEeEcCCCC
Confidence            999999999998865 44466654

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-12  Score=104.04  Aligned_cols=91  Identities=18%  Similarity=0.160  Sum_probs=72.4

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecC---CCeeEEEECCEecCC---CCCeEecc--------CCcEEEEccCCCCCC
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTP---LPQTIWSKDGVPINP---SDRISQGN--------YGKSLIIKHVEFSDQ   99 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p---~~~v~W~~~~~~i~~---~~~~~~~~--------~~~~L~i~~~~~~d~   99 (745)
                      ..|+..|++..+.+|++++|.|.+.|.|   .|.|.|+|++..+..   ..++....        ....|.|.+++.+|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            4678889999999999999999999998   578999998754322   22232211        123799999999999


Q ss_pred             EEEEEEEEeCCeeeEEEEEEEEEEec
Q psy11701        100 GSYTCEVSNGVGEAKSYSIDLSVLAA  125 (745)
Q Consensus       100 G~Y~C~~~~~~g~~~~~~~~l~V~~~  125 (745)
                      |.|+|.|.|..|... ..+.|.|..+
T Consensus        85 G~Y~C~a~N~~G~~~-~~~~L~V~~~  109 (110)
T d2avga1          85 GGYRCEVSTKDKFDC-SNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEEEETTEEEE-EEEEEEEESC
T ss_pred             cEEEEEEEECCCeEE-EEEEEEEEec
Confidence            999999999999887 7788988754

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.40  E-value=8.7e-13  Score=102.66  Aligned_cols=84  Identities=18%  Similarity=0.327  Sum_probs=68.3

Q ss_pred             CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCc---eeecCceEEEccCCCCCCEEEEEEEEeCCceEE-
Q psy11701        132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR---RKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-  207 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~-  207 (745)
                      +.+..+.+|+++.|.|.+.|.|.+.+.|+|+|..+........   .......|.|.+++.+|+|.|+|.|.|..|... 
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            5678899999999999999999999999999999875432211   112346899999999999999999999999754 


Q ss_pred             EEEEEEEe
Q psy11701        208 KDVYVNVL  215 (745)
Q Consensus       208 ~~~~l~v~  215 (745)
                      .++.|.|+
T Consensus        90 ~s~~L~Vl   97 (97)
T d1biha3          90 HSLKLTVV   97 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEC
Confidence            46777763

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.8e-12  Score=103.87  Aligned_cols=91  Identities=14%  Similarity=0.262  Sum_probs=73.5

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecC---CCeEEEEeCCEeccCCCCCCceee----------cCceEEEccCCCCCC
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLP---EPEIHWVHNGKPISQAPPNPRRKV----------GPNRITIENLRKSDT  192 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p---~~~v~W~~~g~~~~~~~~~~~~~~----------~~~~L~i~~v~~~d~  192 (745)
                      |.|...|.+..+.+|++++|.|.+.|.|   .+.+.|+|++..........+...          ..+.|.|.+++.+|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            4678889999999999999999999988   568999998764433222222211          124799999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEee
Q psy11701        193 GNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       193 G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      |.|+|.|+|..|.....+.|.|..
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEES
T ss_pred             cEEEEEEEECCCeEEEEEEEEEEe
Confidence            999999999999999999999874

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.6e-13  Score=106.01  Aligned_cols=91  Identities=21%  Similarity=0.169  Sum_probs=71.3

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecC-CCeeEEEECCEecCC---CCCeEeccCC----cEEEEccCCCCCCEEEEEE
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTP-LPQTIWSKDGVPINP---SDRISQGNYG----KSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p-~~~v~W~~~~~~i~~---~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~  105 (745)
                      ++++..++...+.+|+++.|.|.+.|.| .|.|+|+|++..+..   ..+......+    ..|.|.+++.+|+|.|+|.
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCS   83 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEE
Confidence            3456778888999999999999999998 589999998876532   2222222211    2699999999999999999


Q ss_pred             EEeCCeeeEEEEEEEEEEe
Q psy11701        106 VSNGVGEAKSYSIDLSVLA  124 (745)
Q Consensus       106 ~~~~~g~~~~~~~~l~V~~  124 (745)
                      |.|..|...+.++.|.|..
T Consensus        84 A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          84 ANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEETTEEEECCCEEEEEEC
T ss_pred             EEcCCCeEEEEEEEEEEEE
Confidence            9999998776778888753

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.39  E-value=4e-13  Score=102.31  Aligned_cols=84  Identities=21%  Similarity=0.285  Sum_probs=68.2

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      .+|++|.+|.+..++.++|+|+|++|.+. +.|.+|.|++...   .   ..       ....++|++.+|.|++.|.|+
T Consensus         2 ~AP~~P~~l~~~~~~~~sv~lsW~~p~~~-~~i~~Y~i~~~~~---~---~~-------~~~~t~~~~~~L~p~t~Y~~~   67 (88)
T d1k85a_           2 MAPTAPTNLASTAQTTSSITLSWTASTDN-VGVTGYDVYNGTA---L---AT-------TVTGTTATISGLAADTSYTFT   67 (88)
T ss_dssp             CSCCCCEEEEEEEECSSCEEEEEECCSCC-SSEEEEEEEESSS---E---EE-------EESSSEEEECCCCSSCEEEEE
T ss_pred             cCcCCCCCcEEEEecCCEEEEEEeCCCCC-CCEEEEEEEccce---E---EE-------ecCCCEEEECCCCCCCEEEEE
Confidence            36899999999999999999999998764 4589999986321   0   11       234578999999999999999


Q ss_pred             EEEEecCC-CCCCcceeee
Q psy11701        582 LAGYTKAG-DGAESKYLFY  599 (745)
Q Consensus       582 V~a~n~~G-~g~~S~~~~~  599 (745)
                      |.|+|..| .|++|..+..
T Consensus        68 V~A~n~~G~~s~~S~~v~v   86 (88)
T d1k85a_          68 VKAKDAAGNVSAASNAVSV   86 (88)
T ss_dssp             EEEEETTTEECCCCCCEEE
T ss_pred             EEEEECCCCcCCCCcCEEE
Confidence            99999999 6888876543

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.8e-13  Score=103.25  Aligned_cols=87  Identities=21%  Similarity=0.360  Sum_probs=71.2

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      ..| +|.++++..++.+++.|+|++|.  ++.|.+|.|+|+..+...+....     ......++|.|.+|.|++.|.|+
T Consensus         5 ~vp-~P~~l~v~~~t~~si~l~W~~p~--~~~i~~Y~v~~~~~~~~~~~~~~-----~~~~~~t~~~i~~L~p~t~Y~~~   76 (95)
T d2fnba_           5 EVP-QLTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAGEGIPIFED-----FVDSSVGYYTVTGLEPGIDYDIS   76 (95)
T ss_dssp             CSC-CCTTCEEECCCSSCEEEECCCCC--CSSCCEEEEEEEEETSCCEEEEE-----ECCSSCSEEEECCCCTTSEEEEE
T ss_pred             CcC-cCCCeEEEEEcCCEEEEEEEecC--CceEEeEEEEEEEeeccceEEEE-----EeCCCCeEEEEecccCCEEEEEE
Confidence            445 68999999999999999999885  35799999999987655333222     11567789999999999999999


Q ss_pred             EEEEecCCCCCCcce
Q psy11701        582 LAGYTKAGDGAESKY  596 (745)
Q Consensus       582 V~a~n~~G~g~~S~~  596 (745)
                      |.|.|..|.|.++..
T Consensus        77 V~a~~~~g~s~p~~~   91 (95)
T d2fnba_          77 VITLINGGESAPTTL   91 (95)
T ss_dssp             EEEEETTEECCCCEE
T ss_pred             EEEEeCCcEeCCEEE
Confidence            999999999998643

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.8e-13  Score=101.09  Aligned_cols=75  Identities=24%  Similarity=0.301  Sum_probs=63.2

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI  118 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~  118 (745)
                      .|.+.++.+|+++.|.|.+.|.|.|+++|+||+..+....           .+.+++.+|+|.|+|.|.|..|+.. ..+
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-----------~~~~v~~~d~G~Y~C~A~N~~G~~~-~~~   77 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-----------ESVTVTRDLEGTYLCRARSTQGEVT-REV   77 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-----------SCEECCGGGCEEEEEEEEETTEEEE-EEE
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-----------eeeccccCCCCEEEEEEEcCCCEEE-EEE
Confidence            4577899999999999999999999999999998765332           3446788999999999999999865 778


Q ss_pred             EEEEEec
Q psy11701        119 DLSVLAA  125 (745)
Q Consensus       119 ~l~V~~~  125 (745)
                      .|.|..|
T Consensus        78 ~l~V~~P   84 (84)
T d2oz4a3          78 TVNVLSP   84 (84)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            8888653

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-12  Score=103.89  Aligned_cols=90  Identities=9%  Similarity=0.228  Sum_probs=73.6

Q ss_pred             CCCCCCceeEEEcC--CceEEEEeeCCC--CCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccE
Q psy11701        503 VPGTVQSLEAIPLG--SSAFYLKWVKPE--QPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY  578 (745)
Q Consensus       503 ~P~~p~~~~~~~~~--~~~i~l~W~~p~--~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y  578 (745)
                      .|++|.++.+..+.  .+.|.|+|++|.  +.++.+..|.|+|+..+...+....     + ......+.|.+|.|++.|
T Consensus         1 kP~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~-----~-~~~~~~~~i~~L~p~t~Y   74 (104)
T d1n26a3           1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWM-----V-KDLQHHCVIHDAWSGLRH   74 (104)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEE-----C-GGGCSEEEESSCCTTCCE
T ss_pred             CCcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeec-----c-ccceEEEEECCCCCCCEE
Confidence            48889999988764  567999999986  4567899999999987766544332     2 345678999999999999


Q ss_pred             EEEEEEEecCCCCCCcceee
Q psy11701        579 RIHLAGYTKAGDGAESKYLF  598 (745)
Q Consensus       579 ~~~V~a~n~~G~g~~S~~~~  598 (745)
                      .|+|+|.|..|.|.+|+++.
T Consensus        75 ~~rVra~n~~g~g~wSewS~   94 (104)
T d1n26a3          75 VVQLRAQEEFGQGEWSEWSP   94 (104)
T ss_dssp             EEEEEEEETTTBSCCCCCCC
T ss_pred             EEEEEEEeCCCccCCcCCcC
Confidence            99999999999999988754

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.5e-13  Score=112.59  Aligned_cols=93  Identities=26%  Similarity=0.391  Sum_probs=72.2

Q ss_pred             CCCCCee----EeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCC---------------------------
Q psy11701         30 RHAPKQQ----YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSD---------------------------   78 (745)
Q Consensus        30 ~~~p~~~----~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~---------------------------   78 (745)
                      |.||++.    ...|..+.|.+|++++|.|.+.|.|.|.+.|++++..+....                           
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET   81 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSC
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeecc
Confidence            4455552    246778899999999999999999999999999877664211                           


Q ss_pred             --CeE--eccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701         79 --RIS--QGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL  123 (745)
Q Consensus        79 --~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~  123 (745)
                        ++.  .......|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~  129 (130)
T d1gxea_          82 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQ-VNLTVKVI  129 (130)
T ss_dssp             SSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEE-EEEEEEEC
T ss_pred             CceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEE-EEEEEEEE
Confidence              111  222335799999999999999999999999876 66788774

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.9e-14  Score=107.56  Aligned_cols=89  Identities=20%  Similarity=0.256  Sum_probs=73.7

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCE-EEEEEEEeCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTG-NYGCNATNSL  203 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~~~~  203 (745)
                      .|.|...+.+..+.+|+++.|.|.+.|.|.|.++|++++..+..... .........|.|.+++.+|.| .|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~   80 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVTSDLNRKNVTCWAENDV   80 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC-CCCCSSEEEEEEESCCSTTTTCCEEECCEETT
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee-eeeeccceeEEEccccccccceEEEEEEEcCC
Confidence            57888888899999999999999999999999999999877653221 122334568999999999999 6999999999


Q ss_pred             ceEEEEEEEEE
Q psy11701        204 GYVYKDVYVNV  214 (745)
Q Consensus       204 g~~~~~~~l~v  214 (745)
                      |....++.|.|
T Consensus        81 G~~~~s~~l~V   91 (92)
T d2ifga1          81 GRAEVSVQVNV   91 (92)
T ss_dssp             EECCEEECCCC
T ss_pred             CEEEEEEEEEE
Confidence            99888776654

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.8e-12  Score=102.13  Aligned_cols=89  Identities=20%  Similarity=0.278  Sum_probs=69.0

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecC----C--CCCeEec--cCCcEEEEccCC-CCCCEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPIN----P--SDRISQG--NYGKSLIIKHVE-FSDQGSY  102 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~----~--~~~~~~~--~~~~~L~i~~~~-~~d~G~Y  102 (745)
                      |+.+...+....+.+|+.++|.|.+.|.|.+ .+.|+|++..+.    .  ..++.+.  .....|.|.+++ .+|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            4445677889999999999999999999987 799999764332    1  2334332  334589999998 5799999


Q ss_pred             EEEEEeCCeeeEEEEEEEEE
Q psy11701        103 TCEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus       103 ~C~~~~~~g~~~~~~~~l~V  122 (745)
                      +|.|.|..|... ..+.|.|
T Consensus        82 ~C~A~N~~G~~~-~~~~L~V  100 (101)
T d3b5ha1          82 RCNGTSSKGSDQ-AIITLRV  100 (101)
T ss_dssp             EEEEEETTEEEE-EEEEEEE
T ss_pred             EEEEEECCCEEE-EEEEEEE
Confidence            999999999876 6677776

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=9.1e-13  Score=104.59  Aligned_cols=94  Identities=11%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCc-ccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT-KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      +.|..+.+...+.++|.|+|++|.+.++.+++|.|+|+...+. .|....     .......+|.|.+|.|++.|.|+|+
T Consensus         9 ~~P~~p~~~~~~~~~i~v~W~pp~~~~~~~~~Y~i~y~~~~~~~~w~~v~-----~~~~~~~~~~l~~L~p~t~Y~frVr   83 (106)
T d1cd9b2           9 ALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVF-----HLPSSKDQFELCGLHQAPVYTLQMR   83 (106)
T ss_dssp             ECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSTTCCCEEEE-----EEESCEEEEEECCCCSCSCEEEEEE
T ss_pred             CCCCCCeEecCCCCEEEEEEcCcccCCccceEEEEEEeeccccccceeee-----cccCCceEEEEeccCCCeEEEEEEE
Confidence            4566777888899999999999988888999999999975443 333222     1244668899999999999999999


Q ss_pred             EEecCCCCCCcceeeecccC
Q psy11701        584 GYTKAGDGAESKYLFYVPFK  603 (745)
Q Consensus       584 a~n~~G~g~~S~~~~~~~~~  603 (745)
                      |.|..|.|.+|+++..+..+
T Consensus        84 a~~~~g~g~wS~wS~~~~~~  103 (106)
T d1cd9b2          84 CIRSSLPGFWSPWSPGLQLR  103 (106)
T ss_dssp             EEESSSCCCCCCCCCCEEEC
T ss_pred             EEeCCCCCCCcCCCCCeEec
Confidence            99999999998877544433

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.9e-14  Score=110.63  Aligned_cols=95  Identities=19%  Similarity=0.398  Sum_probs=76.0

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      .+|+.|..+++..++.++|.|+|++|.+.+|.|.+|.|+|+..+......+...   ........+.+.+|.|++ |.|+
T Consensus         3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~~t-Y~~r   78 (102)
T d2dtge1           3 KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTR---KHFALERGCRLRGLSPGN-YSVR   78 (102)
T ss_dssp             CCCCCCCCCCCCSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCCCCCCCCS---SSCCCTTCCCCCSCCSSE-ECCC
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEEeCCCCcceEEEeeeEEEecCCCCceeeeee---ecccceEEEEEeccceee-EEEE
Confidence            345666778888889999999999999889999999999997765544433321   114566789999999985 9999


Q ss_pred             EEEEecCCCCCCcceeeec
Q psy11701        582 LAGYTKAGDGAESKYLFYV  600 (745)
Q Consensus       582 V~a~n~~G~g~~S~~~~~~  600 (745)
                      |+|.|..|.|++|+.+.+.
T Consensus        79 V~A~n~~G~g~~S~~v~f~   97 (102)
T d2dtge1          79 IRATSLAGNGSWTEPTYFY   97 (102)
T ss_dssp             CCEEETTBCCCCCCCCEEC
T ss_pred             EEEEcCCccCCCCCCEEEE
Confidence            9999999999999877554

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.5e-12  Score=99.68  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=65.9

Q ss_pred             eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy11701        134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVN  213 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~  213 (745)
                      ...+.+|+++.|.|.+.|.|.+.++|++++..+....  .......+.|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~   87 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE   87 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeee--eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEE
Confidence            3456789999999999999999999999877654211  11223456899999999999999999999999999999988


Q ss_pred             Ee
Q psy11701        214 VL  215 (745)
Q Consensus       214 v~  215 (745)
                      |.
T Consensus        88 V~   89 (90)
T d1vcaa2          88 IY   89 (90)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-13  Score=102.40  Aligned_cols=73  Identities=29%  Similarity=0.372  Sum_probs=63.3

Q ss_pred             CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy11701        132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVY  211 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~  211 (745)
                      |....+.+|+++.|.|.+.|.|.|.++|+|+|..+...            +.+.+++.+|+|.|+|.|.|..|..+..+.
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~------------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~   78 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI------------GESVTVTRDLEGTYLCRARSTQGEVTREVT   78 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT------------TSCEECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee------------eeeeccccCCCCEEEEEEEcCCCEEEEEEE
Confidence            67888999999999999999999999999998876522            224578899999999999999999988888


Q ss_pred             EEEee
Q psy11701        212 VNVLA  216 (745)
Q Consensus       212 l~v~~  216 (745)
                      |.|..
T Consensus        79 l~V~~   83 (84)
T d2oz4a3          79 VNVLS   83 (84)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88863

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.5e-13  Score=110.96  Aligned_cols=104  Identities=23%  Similarity=0.386  Sum_probs=84.1

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV  480 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V  480 (745)
                      |..+|.++.+.. .+.+++.|+|+++.....+|.+.+|.|+|+....... .....+ ......+.|.+|++++.|.|+|
T Consensus        11 P~~~P~~v~~~~-~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~-~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V   87 (119)
T d1x5ha1          11 PSAAPQNLSLEV-RNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSD-VTETLV-SGTQLSQLIEGLDRGTEYNFRV   87 (119)
T ss_dssp             CCCCCEEEEEEC-CSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEE-EECCBC-CTTCCEEEEECCCSSCEEEEEC
T ss_pred             CCCCCcCeEEEE-ecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccc-eeeeec-CCCccEEEeCCCCCCCEEEEEE
Confidence            446788999887 8889999999998777888999999999987654211 111223 4567889999999999999999


Q ss_pred             EEecCCCCCCCCcceEEeCCCCCCCCC
Q psy11701        481 LAFNGAYNGPPSEIISFVTPEGVPGTV  507 (745)
Q Consensus       481 ~a~n~~G~g~~S~~~~~~t~~~~P~~p  507 (745)
                      +|+|..|.|++|..+.++|.+..|.++
T Consensus        88 ~A~n~~G~G~~S~~~~~~T~~~~~~~~  114 (119)
T d1x5ha1          88 AALTINGTGPATDWLSAETFESDLDET  114 (119)
T ss_dssp             EEEETTEEEEECCCEEEECCSSCCCCC
T ss_pred             EEEcCCcCCCCCCCEEEEeCCCCCCCC
Confidence            999999999999999999987666543

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.36  E-value=1.1e-12  Score=105.38  Aligned_cols=91  Identities=25%  Similarity=0.447  Sum_probs=69.2

Q ss_pred             cCeEEec-CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCC---Ccee-----------ecCceEEEccCCC
Q psy11701        125 APYFTVE-PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN---PRRK-----------VGPNRITIENLRK  189 (745)
Q Consensus       125 ~p~~~~~-~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~---~~~~-----------~~~~~L~i~~v~~  189 (745)
                      .|.|... |.+.++.+|+++.|.|.+.|.|.+.|.|+|++.........   ....           ...+.|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            5767654 78899999999999999999999999999976543211110   0000           1235799999999


Q ss_pred             CCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        190 SDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       190 ~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      +|+|.|+|.|.|..|....++.|.|+
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            99999999999999999999988874

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.5e-13  Score=102.29  Aligned_cols=85  Identities=20%  Similarity=0.444  Sum_probs=67.7

Q ss_pred             cCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec---CceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG---PNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      .|.+..+.+|+++.|.|.+.+.|.+.+.|+|+|..+............   ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            477889999999999999999999999999999998744321111111   24799999999999999999999998754


Q ss_pred             -EEEEEEEe
Q psy11701        208 -KDVYVNVL  215 (745)
Q Consensus       208 -~~~~l~v~  215 (745)
                       ..+.|.|.
T Consensus        82 S~~~~l~V~   90 (91)
T d1rhfa1          82 SQPVWLTVE   90 (91)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence             45777664

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-12  Score=105.21  Aligned_cols=91  Identities=14%  Similarity=0.108  Sum_probs=71.8

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecC---CCeeEEEECCEecC---CCCCeEec----cC----CcEEEEccCCCCCCE
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTP---LPQTIWSKDGVPIN---PSDRISQG----NY----GKSLIIKHVEFSDQG  100 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p---~~~v~W~~~~~~i~---~~~~~~~~----~~----~~~L~i~~~~~~d~G  100 (745)
                      .|+..|+++.+.+|++++|.|.+.|.|   .|+|.|+|++....   ...++...    ..    ...|.|.+++.+|+|
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            567889999999999999999999998   57999999875421   12333211    11    136999999999999


Q ss_pred             EEEEEEEeCCeeeEEEEEEEEEEecC
Q psy11701        101 SYTCEVSNGVGEAKSYSIDLSVLAAP  126 (745)
Q Consensus       101 ~Y~C~~~~~~g~~~~~~~~l~V~~~p  126 (745)
                      .|+|.|.|..|... ..+.|.|..++
T Consensus        82 ~Y~C~a~N~~G~~~-~~~~L~V~~~~  106 (113)
T d2dava1          82 NYRCEVTYKDKFDS-CSFDLEVHEST  106 (113)
T ss_dssp             EEEEEEECSSCEEE-ECCEEEEECCC
T ss_pred             EEEEEEEeCCCEEE-EEEEEEEEcCC
Confidence            99999999998876 77899998665

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.5e-12  Score=99.32  Aligned_cols=85  Identities=13%  Similarity=0.205  Sum_probs=65.7

Q ss_pred             CCCceeEEEcC--CceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        506 TVQSLEAIPLG--SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       506 ~p~~~~~~~~~--~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      +|.++.+...+  .+++.|+|++|.  ++.|.+|+|+|+..++.......    .+ ++...+++|.+|+|++.|+|+|.
T Consensus         2 aP~~~~vt~~~~~~~s~~vsW~~P~--~~~i~~Y~i~y~~~~~~~~~~~~----~v-~~~~~~~~l~gL~P~t~Y~v~v~   74 (93)
T d1owwa_           2 GPVEVFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNSVGRWKEA----TI-PGHLNSYTIKGLKPGVVYEGQLI   74 (93)
T ss_dssp             CCCEEECCCCSSCTTCEEEEEECCS--SSCEEEEEEEEEETTCSSCCEEE----EE-CSSCCEEEECSCCSSEEEEEEEE
T ss_pred             cCcccEEEEccCCCCEEEEEeeccc--ccceeEEEEEEeeccccceeeee----cc-CCCccEEEECCcccCcEEEEEEE
Confidence            45666665554  479999999985  45899999999987654322111    13 66779999999999999999999


Q ss_pred             EEecCCCCCCccee
Q psy11701        584 GYTKAGDGAESKYL  597 (745)
Q Consensus       584 a~n~~G~g~~S~~~  597 (745)
                      |+|..|.|..+...
T Consensus        75 av~~~G~s~~~~~~   88 (93)
T d1owwa_          75 SIQQYGHQEVTRFD   88 (93)
T ss_dssp             EEESSSCEEEEEEE
T ss_pred             EEeCCCccCcEEEE
Confidence            99999999986543

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=5.5e-13  Score=108.96  Aligned_cols=96  Identities=15%  Similarity=0.090  Sum_probs=72.9

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCC-CceeeEEEEEEEcCCc-ccCCcccccccccCCCcceeeecCCCCCccEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPN-GVLMGYKIKYQSVKGT-KVGPLLERLPYISDPTTTSAKLAGLEPSTKYR  579 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~-g~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~  579 (745)
                      .+|++|..+.+..++.++|.|+|++|.+.+ ..|.+|.|+|+..... ....+..    +.....++|+|.+|+|++.|.
T Consensus        14 ~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~----~~~~~~~~~~v~~L~p~t~Y~   89 (120)
T d1wfua_          14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGV----IYTGYATRHVVEGLEPRTLYK   89 (120)
T ss_dssp             CCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEE----EEEESCSEEEEESCCTTCEEE
T ss_pred             cCCCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceee----eccccccEEeCCCCCCCcEee
Confidence            456677777787888999999999987654 4789999999754322 2222222    224456889999999999999


Q ss_pred             EEEEEEecCCCCCCcceeeecc
Q psy11701        580 IHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       580 ~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      |+|+|+|.+|.|++|+.+...+
T Consensus        90 frV~A~n~~G~s~~S~~~~~~T  111 (120)
T d1wfua_          90 FRLKVTSPSGEYEYSPVVSVAT  111 (120)
T ss_dssp             EEEEEECSSSCEEECCCEEEEC
T ss_pred             EEEEEEeCCcEeCCCCCEEEEe
Confidence            9999999999999998765543

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.1e-12  Score=101.79  Aligned_cols=98  Identities=12%  Similarity=0.207  Sum_probs=83.7

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCce-eEEEEccCceeEEEecccccCcceeEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSI-RELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      |+.+|.++.+.. .+.+++.|.|++++....++.+.+|.|.|+......... ....+ ......++|.+|.+++.|.|+
T Consensus         1 P~~~P~~~~~~~-~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~   78 (101)
T d1x4ya1           1 PVAGPYITFTDA-VNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMV-EGDRYWHSISHLQPETSYDIK   78 (101)
T ss_dssp             CCSCCEEEEEEC-SSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEE-ETTCCEEEECSCCTTCEEEEE
T ss_pred             CCCCCcccEEEE-EcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEE-cCCeeEEEEcCCCCCCEEEEE
Confidence            678999999988 899999999998888888899999999998776544332 22334 567788999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCC
Q psy11701        480 VLAFNGAYNGPPSEIISFVTP  500 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~  500 (745)
                      |+|+|..|.|++|..+.++|.
T Consensus        79 v~a~n~~G~s~~S~~~~~~T~   99 (101)
T d1x4ya1          79 MQCFNEGGESEFSNVMICETK   99 (101)
T ss_dssp             EEEECTTCCCCCCCCEEEECC
T ss_pred             EEEEcCCCCCCCCCcEEEEcc
Confidence            999999999999999999885

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-12  Score=99.12  Aligned_cols=84  Identities=14%  Similarity=0.293  Sum_probs=66.6

Q ss_pred             CCCCCceeEEEcCCc-eEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEE
Q psy11701        504 PGTVQSLEAIPLGSS-AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHL  582 (745)
Q Consensus       504 P~~p~~~~~~~~~~~-~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V  582 (745)
                      ++||.++++...+.+ +|.|+|++|.  ++.|.+|+|+|+..++........   .+ +++.+++.|.+|.|++.|.|+|
T Consensus         2 ~~PP~~l~v~~~~~ts~i~v~W~~p~--~~~i~~Y~v~y~~~~~~~~~~~~~---~~-~~~~~~~~i~~L~p~t~Y~v~V   75 (94)
T d1fnfa1           2 LSPPTNLHLEANPDTGVLTVSWERST--TPDITGYRITTTPTNGQQGNSLEE---VV-HADQSSCTFDNLSPGLEYNVSV   75 (94)
T ss_dssp             CCCCEEEEEEECSSSSCEEEEEECCS--CSSCCEEEEEEEETTTCSSCCEEE---EE-CTTCCEEECCCCCTTSCEEEEE
T ss_pred             CCcCcCcEEEEecCCCEEEEEeeCCC--CCCeeEEEEEEEEecccCceEEEE---Ee-CCCccEEEECCCCCCCEEEEEE
Confidence            468899999888654 5999999884  345999999999876554333221   12 5677899999999999999999


Q ss_pred             EEEecCCCCCC
Q psy11701        583 AGYTKAGDGAE  593 (745)
Q Consensus       583 ~a~n~~G~g~~  593 (745)
                      .|.|..|.|.+
T Consensus        76 ~a~~~~g~s~p   86 (94)
T d1fnfa1          76 YTVKDDKESVP   86 (94)
T ss_dssp             EEEETTEECCC
T ss_pred             EEEcCCCEeCC
Confidence            99999998876

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.2e-12  Score=101.89  Aligned_cols=94  Identities=16%  Similarity=0.196  Sum_probs=77.5

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV  480 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V  480 (745)
                      .|.+|.++.+.. .+.+++.|+|+++  ...++.+.+|.|.|+..+...  +..+..   ...+++|.+|.+++.|.|+|
T Consensus        10 vP~~P~~l~v~~-~s~~si~l~W~~P--~~~~g~i~~Y~v~~~~~~~~~--~~~~~~---~~~~~~i~~L~p~t~Y~~~V   81 (103)
T d1x5ga1          10 LPGPAPNLRAYA-ASPTSITVTWETP--VSGNGEIQNYKLYYMEKGTDK--EQDVDV---SSHSYTINGLKKYTEYSFRV   81 (103)
T ss_dssp             CCCCCSSCEEEE-EETTEEEEECCCC--SCCSSCCSEEEEEEEETTCCC--CCCEEE---CSSEEEECSCCTTCEEEEEE
T ss_pred             CcccCCCcEEEE-ccCCEEEEEEECC--cCCCccEEEEEEEEEeCCCce--eEEEec---cccEEecCCCCCCCEEEEEE
Confidence            367888999988 8899999999974  356788999999998765543  222333   55689999999999999999


Q ss_pred             EEecCCCCCCCCcceEEeCCCC
Q psy11701        481 LAFNGAYNGPPSEIISFVTPEG  502 (745)
Q Consensus       481 ~a~n~~G~g~~S~~~~~~t~~~  502 (745)
                      +|.|..|.|++|..+.++|.++
T Consensus        82 ~A~n~~G~g~~S~~v~v~T~eD  103 (103)
T d1x5ga1          82 VAYNKHGPGVSTPDVAVRTLSD  103 (103)
T ss_dssp             EEECSSCCCCBCCCCCEECCCS
T ss_pred             EEEcCCcCcCCCCCEEEEcCCC
Confidence            9999999999999898988753

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=9.8e-13  Score=102.50  Aligned_cols=90  Identities=21%  Similarity=0.295  Sum_probs=72.2

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV  480 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V  480 (745)
                      ||.+|.++.+.. .+.+++.|.|.++ ..+.+++|.+|.|+|+..+...  +............+++.+|.+++.|.|+|
T Consensus         1 PP~~P~~~~v~~-~~~~sv~l~W~pP-~~~~~~~i~~Y~V~~~~~~~~~--~~~~~~~~~~~~~~~v~~L~~~~~Y~frV   76 (98)
T d1x5ya1           1 PTSAPQHLTVED-VTDTTTTLKWRPP-DRIGAGGIDGYLVEYCLEGSEE--WVPANKEPVERCGFTVKDLPTGARILFRV   76 (98)
T ss_dssp             CCCCCEEEEEEE-ECSSEEEEEEECC-SCCCSSCCCEEEEEEEETTCCC--CEESSSSCBSSSEEEEECCCTTCCEEEEE
T ss_pred             CCCCCcCcEEEE-ccCCEEEEEEECC-CcCCCCCceEEEEEEEecCcce--eEEeeeecCceeEEEECCCcCCeEEEEEE
Confidence            789999999988 8999999999974 4455668999999998876533  32222223466789999999999999999


Q ss_pred             EEecCCCCCCCCcc
Q psy11701        481 LAFNGAYNGPPSEI  494 (745)
Q Consensus       481 ~a~n~~G~g~~S~~  494 (745)
                      +|+|..|.|++|..
T Consensus        77 ~A~n~~G~s~~s~~   90 (98)
T d1x5ya1          77 VGVNIAGRSEPATL   90 (98)
T ss_dssp             EEEETTEECCCCCC
T ss_pred             EEECCCcCCCCcCC
Confidence            99999999988753

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.9e-12  Score=101.98  Aligned_cols=93  Identities=15%  Similarity=0.111  Sum_probs=72.8

Q ss_pred             CCCCCCceeEEEcCCceEEEEeeCCCCC----CCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccE
Q psy11701        503 VPGTVQSLEAIPLGSSAFYLKWVKPEQP----NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY  578 (745)
Q Consensus       503 ~P~~p~~~~~~~~~~~~i~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y  578 (745)
                      ++.||.++.+...+.++|.|+|++|...    .+.+.+|.|+|+..+........     + +.+..++.|.||.|++.|
T Consensus         1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~-----~-~~~~~~~~i~~L~p~t~Y   74 (100)
T d1x5ja1           1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN-----A-NATTLSYLVTGLKPNTLY   74 (100)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEE-----C-CBCSSEEEEESCCTTCEE
T ss_pred             CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEe-----c-CCCccEEEECCCCCCCEE
Confidence            3567899999999999999999987532    24577899999876554332221     1 455678999999999999


Q ss_pred             EEEEEEEecCCCCCCcceeeecc
Q psy11701        579 RIHLAGYTKAGDGAESKYLFYVP  601 (745)
Q Consensus       579 ~~~V~a~n~~G~g~~S~~~~~~~  601 (745)
                      .|+|.|+|..|.|++|..+...+
T Consensus        75 ~~~V~a~n~~g~s~~S~~~~~~T   97 (100)
T d1x5ja1          75 EFSVMVTKGRRSSTWSMTAHGTT   97 (100)
T ss_dssp             CCEEEEECSSCBCCCCCCCCEEC
T ss_pred             EEEEEEEeCCcCcCCCCeEEEEe
Confidence            99999999999999998765543

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.8e-12  Score=100.78  Aligned_cols=82  Identities=21%  Similarity=0.301  Sum_probs=68.5

Q ss_pred             ecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEecc-------CCcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEE
Q psy11701         46 LRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGN-------YGKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSI  118 (745)
Q Consensus        46 ~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~  118 (745)
                      ..+..+.|.|.+.|.|.|++.|+|||.+|..+.+.....       ..+.|.|.+++.+|.|.|+|.|.|..|+.. ..+
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~-~~~   92 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE-KQI   92 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEE-EEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEE-EEE
Confidence            367888899999999999999999999998776543211       124799999999999999999999999986 778


Q ss_pred             EEEEEecCeE
Q psy11701        119 DLSVLAAPYF  128 (745)
Q Consensus       119 ~l~V~~~p~~  128 (745)
                      .|.|...|.+
T Consensus        93 ~v~V~~~P~i  102 (103)
T d1wwbx_          93 SAHFMGWPGI  102 (103)
T ss_dssp             EECCSCCCCC
T ss_pred             EEEEEeCCCC
Confidence            8888877753

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.33  E-value=3.2e-12  Score=97.03  Aligned_cols=81  Identities=16%  Similarity=0.244  Sum_probs=63.9

Q ss_pred             EEecCceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701        128 FTVEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYV  206 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~  206 (745)
                      +.+++....+.+|++++|.|.+.+ .|.+.+.|+|||+.+..       ...++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus         5 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~-------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~   77 (89)
T d1fnla2           5 LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNV   77 (89)
T ss_dssp             EEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce-------eccccccEECccceeccceEEEEEEeCCCCe
Confidence            344555566899999999999975 55669999999988752       2345689999999999999999999988765


Q ss_pred             E-EEEEEEEe
Q psy11701        207 Y-KDVYVNVL  215 (745)
Q Consensus       207 ~-~~~~l~v~  215 (745)
                      . ..+.|.|.
T Consensus        78 ~S~~v~itV~   87 (89)
T d1fnla2          78 SSETVNITIT   87 (89)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEeeEEEEEE
Confidence            4 34677765

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.6e-12  Score=100.38  Aligned_cols=90  Identities=28%  Similarity=0.420  Sum_probs=71.3

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCC---CCCCceee----cCceEEEccCC-CCCCEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQA---PPNPRRKV----GPNRITIENLR-KSDTGNY  195 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~---~~~~~~~~----~~~~L~i~~v~-~~d~G~Y  195 (745)
                      ||.|...+....+.+|+.+.|.|.+.|.|.+ .+.|+|++......   ....++..    ....|.|.++. .+|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            7888888999999999999999999998877 79999976433211   11112221    23479999998 5799999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy11701        196 GCNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       196 ~C~~~~~~g~~~~~~~l~v  214 (745)
                      +|.|.|..|.....+.|.|
T Consensus        82 ~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          82 RCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEE
Confidence            9999999999988888877

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.7e-12  Score=105.36  Aligned_cols=99  Identities=20%  Similarity=0.288  Sum_probs=76.0

Q ss_pred             CCCCCCceeEEE--cCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        503 VPGTVQSLEAIP--LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       503 ~P~~p~~~~~~~--~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      .|.+|.++.+..  .+.++|.|+|.+|.+.++.+.+|.|+|+......+.....   ....+..+++.|.+|.+++.|.|
T Consensus         4 kP~pP~~~~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~~~~~~~~~~---~~~~~~~~~~~i~~L~~~t~Y~~   80 (115)
T d1bqua2           4 KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPP---EDTASTRSSFTVQDLKPFTEYVF   80 (115)
T ss_dssp             ECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTCSSCEECCG---GGGCSCCSEEEECSCCSSEEEEE
T ss_pred             ECCCCCCCEEEEeccCCCEEEEEEeeccccccceeeeeeeeeeeeeeeeecccc---ccccccccEEeeCCCccCcEEEE
Confidence            467788887754  4678899999999888899999999999877665433221   12245668999999999999999


Q ss_pred             EEEEEecCCCCCCcceeeecccCC
Q psy11701        581 HLAGYTKAGDGAESKYLFYVPFKN  604 (745)
Q Consensus       581 ~V~a~n~~G~g~~S~~~~~~~~~~  604 (745)
                      +|+|.|..|.|.+|++.......+
T Consensus        81 ~V~a~~~~G~g~~S~~S~~~~~~T  104 (115)
T d1bqua2          81 RIRCMKEDGKGYWSDWSEEASGIT  104 (115)
T ss_dssp             EEEEEETTSCSCCCCCCCCEEEEE
T ss_pred             EEEEEeCCCccCCcCCcCCEEEEC
Confidence            999999999998876654333333

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=2.2e-12  Score=103.53  Aligned_cols=82  Identities=26%  Similarity=0.443  Sum_probs=64.6

Q ss_pred             eeEecCCcEEEEEEE-eecCCCeeEEEECCEecCCCCC----------eEeccCCcEEEEccCCCCCCEEEEEEEEeCCe
Q psy11701         43 EVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDR----------ISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVG  111 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~----------~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g  111 (745)
                      ..+.+|++++|.|.+ .|.|.+.+.|+|++..+.....          .......+.|.|.+++.+|+|.|+|.|.|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            468899999999998 5899999999999998764322          23334456899999999999999999999988


Q ss_pred             eeE-EEEEEEEEEe
Q psy11701        112 EAK-SYSIDLSVLA  124 (745)
Q Consensus       112 ~~~-~~~~~l~V~~  124 (745)
                      ... +..+.|.|..
T Consensus        92 ~~~~s~~v~l~V~~  105 (110)
T d1f97a2          92 TAMRSEAAHMDAVE  105 (110)
T ss_dssp             CCEECCCEEEEEES
T ss_pred             cEEEEEEEEEEEEe
Confidence            765 3456677654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.32  E-value=1.6e-12  Score=97.65  Aligned_cols=80  Identities=21%  Similarity=0.311  Sum_probs=62.9

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      ++..+.+.|....|.+|++++|+|.+.|.|.+ .+.|++|+..+.        ..+.+|.|.+++.+|+|.|+|++.+..
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS--------SQASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE--------SSCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee--------ecceeeEecCCcccCCEEEEEEccCCC
Confidence            34456678888999999999999999998877 466788988765        345689999999999999999997543


Q ss_pred             eeeEEEEEEEEE
Q psy11701        111 GEAKSYSIDLSV  122 (745)
Q Consensus       111 g~~~~~~~~l~V  122 (745)
                      .   +..+.|.|
T Consensus        76 ~---S~~v~L~V   84 (84)
T d1fnla1          76 L---SDPVQLEV   84 (84)
T ss_dssp             C---CCCEEEEE
T ss_pred             c---cccEEEEC
Confidence            3   33355544

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.3e-13  Score=102.60  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=63.6

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEeecCC-CeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGGTPL-PQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~-~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .+|.+ ...+..+.+.+|++++|.|.+.|.|. ++|+|+|++.++....+... ..+++|.|.+++.+|+|.|+|.|.+.
T Consensus         5 ~~P~~-~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T d1n26a1           5 RCPAQ-EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA-GMGRRLLLRSVQLHDSGNYSCYRAGR   82 (93)
T ss_dssp             CCCCC-CCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEE-EESSEEEECSCCGGGCEEEEEESSSS
T ss_pred             CCCcE-EeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEe-cCCCEEEECCCChhcCEEEEEEECCc
Confidence            34444 46778899999999999999988765 59999999999986655443 44668999999999999999999765


Q ss_pred             C
Q psy11701        110 V  110 (745)
Q Consensus       110 ~  110 (745)
                      .
T Consensus        83 ~   83 (93)
T d1n26a1          83 P   83 (93)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=5.5e-12  Score=98.16  Aligned_cols=88  Identities=24%  Similarity=0.362  Sum_probs=66.0

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCC-CeEEEEe-CCEeccCCCCCCcee---ecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPE-PEIHWVH-NGKPISQAPPNPRRK---VGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~-~g~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      +.+.|....+.+|+++.|.|.+.|.|. +.+.|++ +|..+..........   ...+.|.|.+++.+|+|.|+|.|+|.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            345677888999999999999999875 6999999 555554322211111   12357999999999999999999999


Q ss_pred             CceEE-EEEEEEEe
Q psy11701        203 LGYVY-KDVYVNVL  215 (745)
Q Consensus       203 ~g~~~-~~~~l~v~  215 (745)
                      .|... ..+.|.|.
T Consensus        83 ~G~~~~~tv~l~V~   96 (97)
T d1epfa1          83 DGTQSEATVNVKIF   96 (97)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            98653 45677664

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.1e-12  Score=98.22  Aligned_cols=84  Identities=14%  Similarity=0.275  Sum_probs=69.5

Q ss_pred             CCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      +.+|.++++..++.+++.|+|++|.   +++.+|.|+|+..+.........    + +++.+++.|.+|.|++.|.|+|.
T Consensus         2 ld~P~~l~v~~~s~~s~~l~W~~p~---~~~~~y~v~~~~~~~~~~~~~~~----~-~~~~~~~~i~~L~p~t~Y~~~V~   73 (90)
T d1tena_           2 LDAPSQIEVKDVTDTTALITWFKPL---AEIDGIELTYGIKDVPGDRTTID----L-TEDENQYSIGNLKPDTEYEVSLI   73 (90)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECCS---SCCSEEEEEEEETTCTTCCEEEE----E-ETTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCCCcEEEEecCCEEEEEEEeCc---eEeccEEEEEEEcCCCceeEEEE----e-cCCcceeeEeeecCCCEEEEEEE
Confidence            4578999999999999999999874   57899999999876543332221    2 56778999999999999999999


Q ss_pred             EEecCCCCCCcc
Q psy11701        584 GYTKAGDGAESK  595 (745)
Q Consensus       584 a~n~~G~g~~S~  595 (745)
                      |+|..|.|+++.
T Consensus        74 a~~~~g~s~~~~   85 (90)
T d1tena_          74 SRRGDMSSNPAK   85 (90)
T ss_dssp             EEETTEECCCEE
T ss_pred             EEeCCCEeCCEE
Confidence            999999998853

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.31  E-value=5.2e-12  Score=95.66  Aligned_cols=79  Identities=20%  Similarity=0.362  Sum_probs=62.7

Q ss_pred             ecCceeEeeCCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE-
Q psy11701        130 VEPEFINAAEEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY-  207 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~-  207 (745)
                      .++....+.+|++++|.|.+.+ .|.+.+.|+|||+.+..       ...+..|.|.+++.+|+|.|+|.|.|..|... 
T Consensus         5 lq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~-------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S   77 (88)
T d2fcba2           5 LQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF-------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSS   77 (88)
T ss_dssp             EECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc-------cccccccccCccCHHHCCeEEEEEEeCCCCEEe
Confidence            3444556889999999999965 45669999999988752       12356899999999999999999999988754 


Q ss_pred             EEEEEEEe
Q psy11701        208 KDVYVNVL  215 (745)
Q Consensus       208 ~~~~l~v~  215 (745)
                      ..+.|.|.
T Consensus        78 ~~v~l~V~   85 (88)
T d2fcba2          78 KPVTITVQ   85 (88)
T ss_dssp             CCEEEEEC
T ss_pred             eeEEEEEe
Confidence            34677775

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.9e-12  Score=104.41  Aligned_cols=89  Identities=19%  Similarity=0.222  Sum_probs=70.2

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecC---CCeEEEEeCCEeccCCCCCCcee----------ecCceEEEccCCCCCCEE
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLP---EPEIHWVHNGKPISQAPPNPRRK----------VGPNRITIENLRKSDTGN  194 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p---~~~v~W~~~g~~~~~~~~~~~~~----------~~~~~L~i~~v~~~d~G~  194 (745)
                      |...|.+..+.+|++++|.|.+.|.|   .|.+.|+|++..........+..          .....|.|.++..+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            56678899999999999999999987   57999999875432111111111          112469999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEee
Q psy11701        195 YGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       195 Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      |+|.|.|..|.....+.|.|..
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~  104 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHE  104 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEc
Confidence            9999999999999999999875

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.3e-12  Score=98.68  Aligned_cols=82  Identities=15%  Similarity=0.330  Sum_probs=67.9

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEE
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG  584 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a  584 (745)
                      .+|.+|++..++.+++.|+|++|.   +.+.+|+|+|+..+...+.....    + +.+.+++.|.+|.|++.|.|+|.|
T Consensus         2 d~P~~l~v~~vt~~sv~l~W~~p~---~~~~~Y~i~~~~~~~~~~~~~~~----v-~~~~~~~~i~~L~p~t~Y~~~V~a   73 (89)
T d1fnfa3           2 DSPTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHPEHFSGRPREDR----V-PHSRNSITLTNLTPGTEYVVSIVA   73 (89)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECSCCSSCCEEEE----E-ETTCCEEEEESCCTTCEEEEEEEE
T ss_pred             ccCcCCEEEEecCCEEEEEEEeCC---CEEeeEEEEEEECCCCCceEEEE----E-CCCccEEEECCCcccCEEEEEEEE
Confidence            367899999999999999999875   47899999999776554432221    2 566789999999999999999999


Q ss_pred             EecCCCCCCc
Q psy11701        585 YTKAGDGAES  594 (745)
Q Consensus       585 ~n~~G~g~~S  594 (745)
                      .|..|.|++.
T Consensus        74 ~~~~g~s~p~   83 (89)
T d1fnfa3          74 LNGREESPLL   83 (89)
T ss_dssp             EETTEECCCE
T ss_pred             EcCCcCcCCE
Confidence            9999998873

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.1e-12  Score=103.76  Aligned_cols=108  Identities=17%  Similarity=0.257  Sum_probs=75.8

Q ss_pred             CCCCCcceeeecccCCCCCC----CCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEE
Q psy11701        589 GDGAESKYLFYVPFKNPDNV----EGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELV  664 (745)
Q Consensus       589 G~g~~S~~~~~~~~~~~~~~----~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~  664 (745)
                      |.|++|..+...+...++..    ......+++|.|+|++++....+|.|.+|.|+|+...... +              
T Consensus         1 G~s~~S~~v~v~T~~~~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~-~--------------   65 (117)
T d1wj3a_           1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNN-V--------------   65 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSS-C--------------
T ss_pred             CcCCCCCCEEEEcCCCCcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCc-e--------------
Confidence            67778877665544433221    1222356889999999888889999999999998642210 0              


Q ss_pred             eccCCCcceEEEEEEEEeeeecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEE-eCCCCC
Q psy11701        665 LANQPTFQPYEIKVVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISF-VTPEGG  742 (745)
Q Consensus       665 ~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~-~t~~~~  742 (745)
                                .+                     ......+.+.+|.|++.|.|+|+|.|.+|.|++|+++.+ ++.++.
T Consensus        66 ----------~~---------------------~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~G~~S~~v~v~~~~~~~  113 (117)
T d1wj3a_          66 ----------QV---------------------LNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSG  113 (117)
T ss_dssp             ----------EE---------------------EEESSSEEEEECCCSSCEEEEEEEEESSCCCCBCCCEEECCCCCCC
T ss_pred             ----------ee---------------------eeceeeEEEeeccCCcEEEEEEEEEcCCccCCCCCCEEEeccCCCC
Confidence                      00                     012344667799999999999999999999999999877 444443

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.7e-12  Score=99.34  Aligned_cols=95  Identities=15%  Similarity=0.159  Sum_probs=78.6

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .+|.+|.++++.. .+.+++.|.|+++  .+.+|.+.+|.|+|+..+.......  .+ ......++|.+|.+++.|.|+
T Consensus         2 a~P~~p~~~~~~~-~s~~si~v~W~~P--~~~~g~i~~Y~v~y~~~~~~~~~~~--~~-~~~~~~~~i~~L~p~t~Y~~~   75 (98)
T d1x5la1           2 AAPSQVVVIRQER-AGQTSVSLLWQEP--EQPNGIILEYEIKYYEKDKEMQSYS--TL-KAVTTRATVSGLKPGTRYVFQ   75 (98)
T ss_dssp             CCCCCCCCEECSC-BCSSCEEEEECCC--SCCCSCCCEEEEEEEESSSCCSSCE--EE-EESSSEEEECSCCTTCEEEEC
T ss_pred             cCCCCCCceEEEe-ccCCEEEEEEECC--CCCCCCEEEEEEEeecccccceeeE--Ee-cCCceEEEECCCCCCCEEEEE
Confidence            4678888999887 8999999999974  3557889999999987665433332  23 346789999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCC
Q psy11701        480 VLAFNGAYNGPPSEIISFVTP  500 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~  500 (745)
                      |+|.|..|.|++|..+.++|.
T Consensus        76 V~a~n~~G~g~~S~~v~~~T~   96 (98)
T d1x5la1          76 VRARTSAGCGRFSQAMEVETG   96 (98)
T ss_dssp             EEEEETTEECCCCCCEEEECC
T ss_pred             EEEEcCCCCcCCCCCEEEEcC
Confidence            999999999999999999985

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.6e-12  Score=99.74  Aligned_cols=80  Identities=23%  Similarity=0.379  Sum_probs=64.9

Q ss_pred             cCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEec--cC----CcEEEEccCCCCCCEEEEEEEEeCCeeeEEEEEEE
Q psy11701         47 RNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQG--NY----GKSLIIKHVEFSDQGSYTCEVSNGVGEAKSYSIDL  120 (745)
Q Consensus        47 ~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~----~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l  120 (745)
                      .+....|.|.+.|.|.|++.|+|||++|....+....  ..    .+.|.|.+++.+|+|.|+|.|.|..|... .++.|
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~-~~~~v   94 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTAN-QTING   94 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEE-EEEEE
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEE-EEEEE
Confidence            3455668889999999999999999999877664321  11    24699999999999999999999999876 67888


Q ss_pred             EEEecCe
Q psy11701        121 SVLAAPY  127 (745)
Q Consensus       121 ~V~~~p~  127 (745)
                      .|..+|.
T Consensus        95 ~V~~~P~  101 (105)
T d1wwca_          95 HFLKEPF  101 (105)
T ss_dssp             CCSCCCC
T ss_pred             EEEeCCC
Confidence            8877763

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.3e-12  Score=99.33  Aligned_cols=85  Identities=14%  Similarity=0.089  Sum_probs=64.3

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEE---CCEecCCCCCeEecc--CCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSK---DGVPINPSDRISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~---~~~~i~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      .+++..|.+|++++|.|.+.|.|.|.+.|++   ++..+..........  ...+|.|.+++.+|+|.|+|.|.|..|..
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   86 (96)
T d2c9aa1           7 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG   86 (96)
T ss_dssp             CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEE
T ss_pred             ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeE
Confidence            5899999999999999999999988665433   233332222222222  23479999999999999999999999998


Q ss_pred             EEEEEEEEEE
Q psy11701        114 KSYSIDLSVL  123 (745)
Q Consensus       114 ~~~~~~l~V~  123 (745)
                      .+..+.|.|.
T Consensus        87 ~s~~a~L~Vk   96 (96)
T d2c9aa1          87 ISNYAELVVK   96 (96)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
Confidence            8777788773

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.8e-12  Score=102.97  Aligned_cols=101  Identities=25%  Similarity=0.355  Sum_probs=82.6

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeE-EEE-ccCceeEEEecccccCccee
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRE-LIV-NKGESTTTEVDKFVPASKNF  477 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~-~~~-~~~~~~~~~i~~L~~~~~Y~  477 (745)
                      .|+.+|.++.+.. .+.+++.|.|.++.....++.+.+|.|.|+........... ..+ .......+.|.+|.+++.|.
T Consensus         7 ~P~~pP~~v~v~~-~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   85 (109)
T d1va9a1           7 APDGPPMDVTLQP-VTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYG   85 (109)
T ss_dssp             CCSSCCEEEEEEE-CSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEE
T ss_pred             CCCCCCcCcEEEE-ecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEE
Confidence            4667899999988 89999999999988888889999999999877654322211 111 14567899999999999999


Q ss_pred             EEEEEecCCCCCCCCcceEEeCCC
Q psy11701        478 ARVLAFNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       478 ~~V~a~n~~G~g~~S~~~~~~t~~  501 (745)
                      |+|+|.|..|.|++|.++.++|.+
T Consensus        86 ~~V~a~n~~G~g~~S~~v~~~T~e  109 (109)
T d1va9a1          86 VVVQAFNRAGTGPSSSEINATTLE  109 (109)
T ss_dssp             EEEEEEETTEECCCCCCEECCCCS
T ss_pred             EEEEEEcCCcCCCCCCCEEEEcCC
Confidence            999999999999999999998864

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=4.9e-12  Score=98.22  Aligned_cols=91  Identities=11%  Similarity=0.168  Sum_probs=73.1

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .|+.+|.++.+.. .+.+++.|.|+++ ....++.|.+|.|.|+..+.... +....+.......+.|.+|+|++.|+|+
T Consensus         5 ~P~~~P~~~~v~~-~s~tsv~l~W~~P-~~~~~~~i~gY~i~y~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   81 (95)
T d2ibga1           5 DPMPVPELLEIEE-YSETAVVLHWSLA-SDADEHLITGYYAYYRPSSSAGE-YFKATIEGAHARSFKIAPLETATMYEFK   81 (95)
T ss_dssp             CCCCCCEECCCBC-CSSSCEEEEEECC-TTCCGGGCCEEEEEEEETTCCSC-CEEEEEECTTCCEEEECSCCTTCEEEEE
T ss_pred             CCCCCCcCeEEEE-eCCCEEEEEEEee-eeccCCcccccceeEeeeeecce-eeeeeccCCceeEEEEeeccCCeEEEEE
Confidence            4667788898877 8899999999974 44556789999999987665433 3333332667889999999999999999


Q ss_pred             EEEecCCCCCCCCc
Q psy11701        480 VLAFNGAYNGPPSE  493 (745)
Q Consensus       480 V~a~n~~G~g~~S~  493 (745)
                      |+|+|..|.|++|.
T Consensus        82 V~A~n~~G~s~~Ss   95 (95)
T d2ibga1          82 LQSFSAASASEFSA   95 (95)
T ss_dssp             EEEECSSCBCCCCC
T ss_pred             EEEEeCCccCCCCC
Confidence            99999999998873

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.4e-12  Score=97.66  Aligned_cols=82  Identities=20%  Similarity=0.376  Sum_probs=67.9

Q ss_pred             CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEE
Q psy11701        506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY  585 (745)
Q Consensus       506 ~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~  585 (745)
                      +|.+|++..++.+++.|+|++|.  ++.+.+|.|+|+..++........    + ....+.+.|.+|.|++.|.|+|.|+
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~--~~~~~~y~v~y~~~~~~~~~~~~~----~-~~~~~~~~i~~L~p~t~Y~~~V~a~   75 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNEEDVAELS----I-SPSDNAVVLTNLLPGTEYVVSVSSV   75 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT--TCCCSEEEEEEEETTCTTCCEEEE----E-CTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             cCCceEEEEeCCCEEEEEEEecC--CCCcceeEEEEEECCCCccEEEEE----e-CCCceEEEEeceeCCCEEEEEEEEE
Confidence            57899999999999999999874  467999999999876553332221    2 5577899999999999999999999


Q ss_pred             ecCCCCCCc
Q psy11701        586 TKAGDGAES  594 (745)
Q Consensus       586 n~~G~g~~S  594 (745)
                      +..|.|.+.
T Consensus        76 ~~~g~S~p~   84 (91)
T d1fnfa2          76 YEQHESTPL   84 (91)
T ss_dssp             ETTEECCCE
T ss_pred             cCCCCCCCE
Confidence            999998873

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.2e-12  Score=102.23  Aligned_cols=87  Identities=21%  Similarity=0.337  Sum_probs=69.5

Q ss_pred             ccceeEecCCcEEEEE---EEeecCCCeeEEEECCEecCCCCCeEec--cC-------CcEEEEccCCCCCCEEEEEEEE
Q psy11701         40 RKKEVALRNKKVELFC---IFGGTPLPQTIWSKDGVPINPSDRISQG--NY-------GKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C---~~~g~p~~~v~W~~~~~~i~~~~~~~~~--~~-------~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      |.++.+.+|..+.+.|   .+.|.|.|++.|+|||++|..+.+....  ..       ...|.|.+++.+|.|.|+|.|.
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            4555676777777665   7899999999999999999876654321  11       1369999999999999999999


Q ss_pred             eCCeeeEEEEEEEEEEecCe
Q psy11701        108 NGVGEAKSYSIDLSVLAAPY  127 (745)
Q Consensus       108 ~~~g~~~~~~~~l~V~~~p~  127 (745)
                      |..|... ..+.|.|..+|.
T Consensus        84 N~~G~~~-~~i~v~v~~~P~  102 (107)
T d1he7a_          84 NPFGQAS-ASIMAAFMDNPF  102 (107)
T ss_dssp             ETTEEEE-EEEEECCCSCTT
T ss_pred             eCCCEEE-EEEEEEEEcCCC
Confidence            9999876 778999988883

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=3.7e-12  Score=98.50  Aligned_cols=84  Identities=19%  Similarity=0.319  Sum_probs=68.2

Q ss_pred             CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEE
Q psy11701        506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY  585 (745)
Q Consensus       506 ~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~  585 (745)
                      +|.++++...+.++|.|+|++|.   +.+.+|.|+|+.............   ......+++.|.+|.|++.|.|+|.|+
T Consensus         3 aP~~l~v~~~~~~sv~v~W~~p~---~~~~~y~v~y~~~~~~~~~~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V~a~   76 (92)
T d1tdqa2           3 APKNLRVGSRTATSLDLEWDNSE---AEAQEYKVVYSTLAGEQYHEVLVP---KGIGPTTKTTLTDLVPGTEYGVGISAV   76 (92)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEETTCCCCEEEEEE---CCSSSEEEEEECSCCTTCEEEEEEEEE
T ss_pred             cCcCCEEEEecCCEEEEEEEecC---CcccceEEEEEEcCCCcceeeEEE---ecCCCeeEEEECCccCCCEEEEEEEEE
Confidence            56899999999999999999874   478999999998765433322211   125567889999999999999999999


Q ss_pred             ecCCCCCCcc
Q psy11701        586 TKAGDGAESK  595 (745)
Q Consensus       586 n~~G~g~~S~  595 (745)
                      |..|.|.++.
T Consensus        77 ~~~g~s~p~~   86 (92)
T d1tdqa2          77 MNSKQSIPAT   86 (92)
T ss_dssp             ETTEECCCEE
T ss_pred             eCCCEecCEE
Confidence            9999999864

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.31  E-value=3.6e-12  Score=97.16  Aligned_cols=81  Identities=16%  Similarity=0.378  Sum_probs=67.8

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEE
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG  584 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a  584 (745)
                      ++|.+|++..++.+++.|+|++|.   +++.+|.|+|+..+...+....     . +...+++.|.+|.|++.|.|+|.|
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~~~---~~~~~Y~i~~~~~~~~~~~~~~-----~-~~~~~~~~i~~L~p~t~Y~~~V~a   72 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTPPR---SRVDSYRVSYVPITGGTPNVVT-----V-DGSKTRTKLVKLVPGVDYNVNIIS   72 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECCCS---SCCSEEEEEEEETTCCCCEEEE-----E-ETTCCEEEECSCCSSCEEEEEEEE
T ss_pred             cCCcceEEEEecCCEEEEEEEccc---EeeceEEEEEEeccCCceEEEE-----e-cCCccEEEECCCCCCCEEEEEEEE
Confidence            467899999999999999999874   5799999999987665433222     2 456689999999999999999999


Q ss_pred             EecCCCCCCc
Q psy11701        585 YTKAGDGAES  594 (745)
Q Consensus       585 ~n~~G~g~~S  594 (745)
                      +|..|.|.+.
T Consensus        73 ~~~~g~s~p~   82 (88)
T d1qr4a2          73 VKGFEESEPI   82 (88)
T ss_dssp             EETTEECCCE
T ss_pred             EeCCCCcCCE
Confidence            9999998873

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.30  E-value=2.1e-12  Score=97.35  Aligned_cols=78  Identities=21%  Similarity=0.259  Sum_probs=63.4

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      .+.+.|....|.+|++++|.|.+.+.|.+ .+.|++||+.+.        ..++.|.|.+++.+|+|.|+|.+.+..+. 
T Consensus         6 ~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~--------~~~~~l~i~~v~~~dsG~Y~C~a~ns~~S-   76 (85)
T d2fcba1           6 VLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIP--------THTQPSYRFKANNNDSGEYTCQTGQTSLS-   76 (85)
T ss_dssp             EEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECT--------TCCSSEEEEECCGGGCEEEEEECTTSBCC-
T ss_pred             EEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccc--------ccccceEEeeccccCCcEEEEECCCCccc-
Confidence            45677888999999999999999888766 688999999986        33457999999999999999999765433 


Q ss_pred             EEEEEEEEEE
Q psy11701        114 KSYSIDLSVL  123 (745)
Q Consensus       114 ~~~~~~l~V~  123 (745)
                        ..+.|.|.
T Consensus        77 --~~v~l~V~   84 (85)
T d2fcba1          77 --DPVHLTVL   84 (85)
T ss_dssp             --CCEEEEEE
T ss_pred             --ccEEEEEE
Confidence              34666664

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8e-12  Score=96.38  Aligned_cols=90  Identities=24%  Similarity=0.420  Sum_probs=75.5

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      ++|.++.+.. .+.++|.|+|+++     ++.+.+|.|+|+...........  . ......+.|.+|.|++.|.|+|+|
T Consensus         3 ~aP~n~~~~~-~s~~si~l~W~~p-----~~~~~~Y~i~y~~~~~~~~~~~~--~-~~~~~~~~i~~L~p~t~Y~~~V~A   73 (92)
T d1qg3a1           3 GAPQNPNAKA-AGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHL--L-DSKVPSVELTNLYPYCDYEMKVCA   73 (92)
T ss_dssp             CCCEEEEEEE-CSTTCEEEEEECC-----SSCCCEEEEEEEETTSCGGGCEE--E-EESSSEEEECSCCTTCEEEEEEEE
T ss_pred             CcCCCCEEEE-ccCCEEEEEEEec-----CCCccceEEeeeeccccccEEEE--e-cCCccEEEECCCCCCcEEEEEEEE
Confidence            6899999988 8999999999985     24578999999887665443333  3 446778999999999999999999


Q ss_pred             ecCCCCCCCCcceEEeCCC
Q psy11701        483 FNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       483 ~n~~G~g~~S~~~~~~t~~  501 (745)
                      .|..|.|++|..+.++|.+
T Consensus        74 ~n~~G~g~~S~~~~~~T~e   92 (92)
T d1qg3a1          74 YGAQGEGPYSSLVSCRTHQ   92 (92)
T ss_dssp             ECSSCBCCCCCCEEEECCC
T ss_pred             EeCCcCcCCCCCEEEEcCC
Confidence            9999999999999999864

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.2e-12  Score=96.74  Aligned_cols=81  Identities=16%  Similarity=0.317  Sum_probs=68.0

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEE
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG  584 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a  584 (745)
                      +||.++++...+.+++.|+|++|.   +++.+|.|+|+..++..+....     + ......+.|.+|.|++.|.|+|.|
T Consensus         3 spP~~l~v~~~~~~si~v~W~~p~---~~~~~Y~i~~~~~~~~~~~~~~-----~-~~~~~~~~i~~L~p~t~Y~~~V~a   73 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWRTKT---ETITGFQVDAVPANGQTPIQRT-----I-KPDVRSYTITGLQPGTDYKIYLYT   73 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEECCS---SCCCCEEEEEEESSSSCCEEEE-----C-CTTCSEEEEESCCTTCEEEEEEEE
T ss_pred             CcCCCCEEEEecCCEEEEEEECCC---CCCceeEEEEEEccCCceEEEe-----c-CCCccEEEeCCCCCCcEEEEEEEE
Confidence            578999999999999999999874   5799999999987654332221     2 566789999999999999999999


Q ss_pred             EecCCCCCCc
Q psy11701        585 YTKAGDGAES  594 (745)
Q Consensus       585 ~n~~G~g~~S  594 (745)
                      .|..|.|++.
T Consensus        74 ~~~~g~s~p~   83 (90)
T d1fnha2          74 LNDNARSSPV   83 (90)
T ss_dssp             EETTEECCCE
T ss_pred             EeCCCCcCCE
Confidence            9999999874

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.30  E-value=4.7e-12  Score=96.35  Aligned_cols=80  Identities=25%  Similarity=0.365  Sum_probs=66.7

Q ss_pred             CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEE
Q psy11701        506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY  585 (745)
Q Consensus       506 ~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~  585 (745)
                      +|.+|++...+.+++.|+|++|.   +.+.+|.|+|+..+...... .     + +...++++|.+|.|++.|.|+|.|+
T Consensus         2 aP~~l~v~~~t~~sv~v~W~~p~---~~~~~Y~v~~~~~~~~~~~~-~-----~-~~~~~~~~~~~L~p~t~Y~v~V~a~   71 (87)
T d1qr4a1           2 NPKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYVSPSGKKNEM-E-----I-PVDSTSFILRGLDAGTEYTISLVAE   71 (87)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECTTCCEEEE-E-----E-CTTCSEEEEESCCSSCEEEEEEEEE
T ss_pred             cCcCcEEEEecCCEEEEEEECCC---CCcceeEEEeecCCcceeEE-e-----C-CCCcCEEEECCCCcCCEEEEEEEEE
Confidence            57899999999999999999885   46899999998765442211 1     2 5677899999999999999999999


Q ss_pred             ecCCCCCCcc
Q psy11701        586 TKAGDGAESK  595 (745)
Q Consensus       586 n~~G~g~~S~  595 (745)
                      +..|.|+++.
T Consensus        72 ~~~~~s~~~~   81 (87)
T d1qr4a1          72 KGRHKSKPTT   81 (87)
T ss_dssp             SSSCBCCCEE
T ss_pred             cCCCCccCEE
Confidence            9999998853

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.1e-12  Score=101.84  Aligned_cols=94  Identities=15%  Similarity=0.174  Sum_probs=64.8

Q ss_pred             CCCCCCceeEEEcCCceEEEEeeCCCCCCC---ceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEE
Q psy11701        503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNG---VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR  579 (745)
Q Consensus       503 ~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g---~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~  579 (745)
                      .|.+|.+|.+...+.+++.|+|.+|...++   ....|.|+|+..+...+......   ........+++.+|.|++.|.
T Consensus         1 kP~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~---~~~~~~~~~~i~~L~p~t~Y~   77 (101)
T d1iarb2           1 KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNV---TYLEPSLRIAASTLKSGISYR   77 (101)
T ss_dssp             CCCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEE---CSSCCEEEECC-----CCCEE
T ss_pred             CcccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeee---ccCccceEEEECCCCCCCEEE
Confidence            488899999999999999999998865444   34569999988766544333221   113455789999999999999


Q ss_pred             EEEEEEecCCCCCCcceeee
Q psy11701        580 IHLAGYTKAGDGAESKYLFY  599 (745)
Q Consensus       580 ~~V~a~n~~G~g~~S~~~~~  599 (745)
                      |+|+|.|..|.|++|+++..
T Consensus        78 ~rVrA~~~~g~g~wSewS~~   97 (101)
T d1iarb2          78 ARVRAWAQAYNTTWSEWSPS   97 (101)
T ss_dssp             EEEEEECGGGTCCCCCCCCC
T ss_pred             EEEEEEcCCCCCCCcCCCCC
Confidence            99999999999999987643

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.7e-12  Score=101.51  Aligned_cols=90  Identities=12%  Similarity=0.206  Sum_probs=68.4

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeecC-CCeEEEEeCCEeccCCCCCCcee-e-c----CceEEEccCCCCCCEEEEEEE
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGLP-EPEIHWVHNGKPISQAPPNPRRK-V-G----PNRITIENLRKSDTGNYGCNA  199 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~g~~~~~~~~~~~~~-~-~----~~~L~i~~v~~~d~G~Y~C~~  199 (745)
                      .|...+....+.+|+++.|.|.+.|.| .|.++|+|++..+.......... . .    ...|.|.++..+|+|.|+|.|
T Consensus         5 ~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   84 (104)
T d2aw2a1           5 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSA   84 (104)
T ss_dssp             ECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEE
Confidence            355667888999999999999999988 48999999887664322222211 1 1    125999999999999999999


Q ss_pred             EeCCceEEE-EEEEEEee
Q psy11701        200 TNSLGYVYK-DVYVNVLA  216 (745)
Q Consensus       200 ~~~~g~~~~-~~~l~v~~  216 (745)
                      .|..|.... .+.|.|..
T Consensus        85 ~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          85 NFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EETTEEEECCCEEEEEEC
T ss_pred             EcCCCeEEEEEEEEEEEE
Confidence            999997653 57777753

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7.7e-12  Score=94.94  Aligned_cols=81  Identities=14%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             EecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        129 TVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      ..++....+.+|+.++|.|.+.+. +...+.|||||+.+...       .....|.|.+++.+|+|.|+|.|.|..+...
T Consensus         4 ilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~-------~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~   76 (89)
T d1f2qa2           4 LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-------YENHNISITNATVEDSGTYYCTGKVWQLDYE   76 (89)
T ss_dssp             EEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-------CCSSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc-------cccceEEEeeeeeecCcEEEEEEEeCCCCeE
Confidence            344555568899999999999765 45599999999988632       2246799999999999999999999887643


Q ss_pred             -EEEEEEEee
Q psy11701        208 -KDVYVNVLA  216 (745)
Q Consensus       208 -~~~~l~v~~  216 (745)
                       ..+.|.|..
T Consensus        77 S~~v~i~V~~   86 (89)
T d1f2qa2          77 SEPLNITVIK   86 (89)
T ss_dssp             CCCEEEEEEC
T ss_pred             eeeEEEEEEe
Confidence             347788775

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.2e-12  Score=96.88  Aligned_cols=86  Identities=21%  Similarity=0.261  Sum_probs=63.3

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCC-CCeEe--ccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPS-DRISQ--GNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~-~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      +|..+-..++...|.+|+++.|.|.+. .|.+.+.|+|||..|..+ .++.+  ......|.|.+++.+|+|.|+|.|.+
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            344443444456799999999999985 588899999999999764 33333  33345899999999999999999954


Q ss_pred             CCeeeEEEEEEEEEE
Q psy11701        109 GVGEAKSYSIDLSVL  123 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~  123 (745)
                      .    . .++.|.|.
T Consensus        84 ~----~-~s~~l~V~   93 (94)
T d1pd6a_          84 E----K-CSTELFVK   93 (94)
T ss_dssp             E----E-ECCEEEEE
T ss_pred             E----E-EEEEEEEE
Confidence            2    2 34556654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.2e-12  Score=98.59  Aligned_cols=73  Identities=18%  Similarity=0.237  Sum_probs=59.1

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      .+..+.+|+++.|.|.+.| |.|.+.|+++|.+|...........+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence            3467999999999999987 667999999999987654322223455799999999999999999998766543

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=4.1e-12  Score=96.31  Aligned_cols=82  Identities=22%  Similarity=0.349  Sum_probs=67.4

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEE
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG  584 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a  584 (745)
                      .+|.++++...+.+++.|+|++|.   +.+.+|.|+|+..++......      + +...+++.|.+|.|++.|.|+|.|
T Consensus         2 ~~P~nl~v~~~~~~s~~l~W~~p~---~~~~~Y~v~~~~~~~~~~~~~------~-~~~~~~~~~~~L~p~t~Y~v~V~a   71 (86)
T d1tdqa3           2 DSPRDLMVTASSETSISLIWTKAS---GPIDHYRITFTPSSGISSEVT------V-PRDRTSYTLTDLEPGAEYIISITA   71 (86)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCC---SCCSEEEEEEECSSSCCEEEE------E-ESSCSEEEECCCCTTCCEEEEEEE
T ss_pred             ccCCCCEEEEecCCEEEEEEeCCC---CCccceEEEEecccccceEEE------e-CCCccEEEECCCccccEEEEEEEE
Confidence            367899999999999999999974   479999999987654332211      2 556789999999999999999999


Q ss_pred             EecCCCCCCcce
Q psy11701        585 YTKAGDGAESKY  596 (745)
Q Consensus       585 ~n~~G~g~~S~~  596 (745)
                      .|..|.|.++..
T Consensus        72 ~~~~~~s~p~~~   83 (86)
T d1tdqa3          72 ERGRQQSLESTV   83 (86)
T ss_dssp             EETTEECCCEEE
T ss_pred             EcCCCEECCEEe
Confidence            999999988643

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1e-11  Score=95.46  Aligned_cols=92  Identities=16%  Similarity=0.238  Sum_probs=75.8

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .+|.+|.++++.. .+.++|.|+|+++.. ..++.+++|.|+++..++    ......   ...+++|.+|.+++.|.|+
T Consensus         1 a~p~~p~~L~~~~-~~~~si~vsW~~p~~-~~~~~~i~Y~i~~~~~~~----~~~~~~---~~t~~~i~~L~p~t~Y~~r   71 (94)
T d1x5aa1           1 AESLSGLSLKLVK-KEPRQLELTWAGSRP-RNPGGNLSYELHVLNQDE----EWHQMV---LEPRVLLTKLQPDTTYIVR   71 (94)
T ss_dssp             CCCCCSCCCCEEE-EETTEEEEECCCCCS-SCCSSCCEEEEEEECSSC----EEEEEE---SSSEEEEESCCSSCEEEEE
T ss_pred             CcCCCCCceEEEE-cCCCEEEEEEecccC-CCCCcEEEEEEEEecCCc----eEEEee---ccCEEEECCCCCCCEEEEE
Confidence            3688899999998 899999999998644 345667899998876543    222222   4678999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCC
Q psy11701        480 VLAFNGAYNGPPSEIISFVTP  500 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~  500 (745)
                      |+|.|..|.|++|..+.++|.
T Consensus        72 V~A~n~~G~g~~S~~~~~~T~   92 (94)
T d1x5aa1          72 VRTLTPLGPGPFSPDHEFRTS   92 (94)
T ss_dssp             EEEECSSSCCCCCCCEEEECC
T ss_pred             EEEEcCCcCcCCCCCEEEEeC
Confidence            999999999999999999984

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.2e-12  Score=102.51  Aligned_cols=98  Identities=12%  Similarity=0.180  Sum_probs=80.5

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      ..|.+|.++.+.. .+.+++.|.|+++.  ..+|.+.+|.|+|+.............. ......++|.+|.+++.|.|+
T Consensus        19 ~~P~~P~~~~~~~-~~~~sv~v~W~~P~--~~~g~i~~Y~i~y~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~   94 (117)
T d1wfoa1          19 DVPGPPMGILFPE-VRTTSVRLIWQPPA--APNGIILAYQITHRLNTTTANTATVEVL-APSARQYTATGLKPESVYLFR   94 (117)
T ss_dssp             CCCCCCCCCEEEE-ECSSEEEEECCCCS--CCCSCCCEEEEEEEESSCCCSCCCEEEE-CTTCCEEEEESCCSSSEEEEE
T ss_pred             CCCcCCCCcEEEE-ecCCEEEEEEECCC--CCCCceEEEeeeeeeccCCCceEeEEec-CCceEEEEECCCCCCCEEEEE
Confidence            3478899999987 88999999999743  4468899999998877665444433344 667889999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCCC
Q psy11701        480 VLAFNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~~  501 (745)
                      |+|.|..|.|++|..+.++|.+
T Consensus        95 V~A~n~~G~g~~S~~~~~tT~e  116 (117)
T d1wfoa1          95 ITAQTRKGWGEAAEALVVTTEK  116 (117)
T ss_dssp             EEEECSSCEEEEEEEEEECCSS
T ss_pred             EEEECCCcCCCCcCCEEEECCC
Confidence            9999999999999988888754

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.1e-12  Score=95.69  Aligned_cols=84  Identities=24%  Similarity=0.266  Sum_probs=65.6

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC--eEecc--CCcEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR--ISQGN--YGKSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~--~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      ++..++++..+.+|+++.|.|.+. .|.+.+.|+|+|+++..+.+  +....  ....|.|.+++.+|+|.|+|.|.|. 
T Consensus         2 ~i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-   79 (90)
T d1x44a1           2 MVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG-   79 (90)
T ss_dssp             CCSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE-
T ss_pred             EEEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc-
Confidence            345677899999999999999994 68889999999999876543  44333  3358999999999999999999552 


Q ss_pred             eeeEEEEEEEEEEe
Q psy11701        111 GEAKSYSIDLSVLA  124 (745)
Q Consensus       111 g~~~~~~~~l~V~~  124 (745)
                         . .++.|.|..
T Consensus        80 ---~-~~a~l~V~~   89 (90)
T d1x44a1          80 ---Q-SSAKLSVDL   89 (90)
T ss_dssp             ---E-EEEEEEEEC
T ss_pred             ---e-EEEEEEEEE
Confidence               2 346666653

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=8.5e-12  Score=96.22  Aligned_cols=85  Identities=13%  Similarity=0.292  Sum_probs=70.5

Q ss_pred             CCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      +.+|.++.+..++.+++.|+|++|.   +.+.+|.|.|+..+...+.....    + +.+.+++++.+|.|++.|.|+|.
T Consensus         4 ~~~P~~l~v~~v~~~si~v~W~~p~---~~~~~y~i~~~~~~~~~~~~~~~----~-~~~~~~~~i~~L~p~t~Y~v~V~   75 (93)
T d1tdqa1           4 IDGPTQILVRDVSDTVAFVEWTPPR---AKVDFILLKYGLVGGEGGKTTFR----L-QPPLSQYSVQALRPGSRYEVSIS   75 (93)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEESSSSCCCEEEE----E-CTTCSEEEECSCCTTCEEEEEEE
T ss_pred             CCcCCCCEEEEeCCCEEEEEEEccc---cCCCceEEEEEeccCcceeeEEE----e-CCCceEEEEeCcccceEEEEEEE
Confidence            4678999999999999999999874   57899999999877654432221    2 56678999999999999999999


Q ss_pred             EEecCCCCCCcce
Q psy11701        584 GYTKAGDGAESKY  596 (745)
Q Consensus       584 a~n~~G~g~~S~~  596 (745)
                      |.|..|.|.++..
T Consensus        76 a~~~~g~s~~~~~   88 (93)
T d1tdqa1          76 AVRGTNESDASST   88 (93)
T ss_dssp             EEETTEECCCEEE
T ss_pred             EEeCCCCcCCEEE
Confidence            9999999988643

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.6e-12  Score=97.66  Aligned_cols=80  Identities=23%  Similarity=0.419  Sum_probs=65.9

Q ss_pred             CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEE
Q psy11701        506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY  585 (745)
Q Consensus       506 ~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~  585 (745)
                      +|.+|++...+.+++.|+|++|.   +.|.+|.|+|+..+...+.....    + ....+++.|.+|.|++.|.|+|.|+
T Consensus         3 aP~nl~v~~~~~~s~~l~W~~p~---~~i~~Y~i~~~~~~~~~~~~~~~----~-~~~~~~~~~~~L~p~t~Y~~~V~a~   74 (89)
T d1fnha3           3 APSNLRFLATTPNSLLVSWQPPR---ARITGYIIKYEKPGSPPREVVPR----P-RPGVTEATITGLEPGTEYTIYVIAL   74 (89)
T ss_dssp             CCEEEEEEEEETTEEEEEEECCS---SCCSEEEEEEECTTSCCEECTTC----C-CTTCCEEEEESCCTTCEEEEEEEEE
T ss_pred             cCcCCEEEEecCCEEEEEEeCCC---cCCceEEEEEeeccCCccEEEEE----c-CCCccEEEEEeeeCCCEEEEEEEEE
Confidence            56899999999999999999874   57999999999876554332221    2 4566899999999999999999999


Q ss_pred             ecCCCCCC
Q psy11701        586 TKAGDGAE  593 (745)
Q Consensus       586 n~~G~g~~  593 (745)
                      |..|.|.+
T Consensus        75 n~~g~S~p   82 (89)
T d1fnha3          75 KNNQKSEP   82 (89)
T ss_dssp             SSSCEEEE
T ss_pred             cCCCEeCC
Confidence            99998766

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.2e-12  Score=99.94  Aligned_cols=92  Identities=23%  Similarity=0.350  Sum_probs=69.2

Q ss_pred             EEecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-----cCceEEEccCCCCCCEEEE
Q psy11701        122 VLAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-----GPNRITIENLRKSDTGNYG  196 (745)
Q Consensus       122 V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~  196 (745)
                      |..||.+.....   ...+....|.|.+.|.|.|.++|+|||+.+...........     ..+.|.|.+++.+|+|.|+
T Consensus         2 V~~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           2 VYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             EEcCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            556676543322   12445567888999999999999999999875432211111     1346999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEEee
Q psy11701        197 CNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       197 C~~~~~~g~~~~~~~l~v~~  216 (745)
                      |.|+|..|....++.|.|..
T Consensus        79 C~a~N~~G~~~~~~~v~V~~   98 (105)
T d1wwca_          79 LIAKNPLGTANQTINGHFLK   98 (105)
T ss_dssp             EEEEETTEEEEEEEEECCSC
T ss_pred             EEEEcCCCEEEEEEEEEEEe
Confidence            99999999999999988875

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.2e-12  Score=97.16  Aligned_cols=82  Identities=24%  Similarity=0.321  Sum_probs=67.4

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEE
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG  584 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a  584 (745)
                      .+|.++++...+.+++.|+|++|.   +.+.+|.|.|+..+..... ..     + +...+++.|.+|.|++.|.|+|.|
T Consensus         3 ~~P~~l~~~~~~~~sv~l~W~~p~---~~~~~Y~v~~~~~~~~~~~-~~-----~-~~~~~~~~i~~L~p~t~Y~~~V~a   72 (93)
T d2cuma1           3 EAPRDLEAKEVTPRTALLTWTEPP---VRPAGYLLSFHTPGGQTQE-IL-----L-PGGITSHQLLGLFPSTSYNARLQA   72 (93)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECCS---SCCSEEEEEEECTTSCEEE-EE-----E-CSSCSEEEECSCCTTCEEEEEEEE
T ss_pred             CcCCCCEEEEeCCCEEEEEEEccc---cccccEEEEEEccccccEE-EE-----E-CCCccEEEEeCccCCCEEEEEEEE
Confidence            367899999999999999999874   4789999999876543221 11     2 567789999999999999999999


Q ss_pred             EecCCCCCCcce
Q psy11701        585 YTKAGDGAESKY  596 (745)
Q Consensus       585 ~n~~G~g~~S~~  596 (745)
                      +|..|.|+++..
T Consensus        73 ~~~~g~s~~~~~   84 (93)
T d2cuma1          73 MWGQSLLPPVST   84 (93)
T ss_dssp             EBTTBCCCCEEE
T ss_pred             EeCCCCCCCEEE
Confidence            999999998643

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.9e-12  Score=96.37  Aligned_cols=80  Identities=23%  Similarity=0.455  Sum_probs=66.0

Q ss_pred             CceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEEec
Q psy11701        508 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTK  587 (745)
Q Consensus       508 ~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~  587 (745)
                      ++|++..++.+++.|+|++|.   +.+.+|.|+|+..+...+.....    + +++.+++.|.+|.|++.|.|+|.|.|.
T Consensus         1 rnl~v~~~t~~sv~l~W~~p~---~~~~~Y~v~~~~~~~~~~~~~~~----~-~~~~t~~~l~~L~p~t~Y~~~V~a~~~   72 (91)
T d1fnaa_           1 RDLEVVAATPTSLLISWDAPA---VTVRYYRITYGETGGNSPVQEFT----V-PGSKSTATISGLKPGVDYTITVYAVTG   72 (91)
T ss_dssp             CCCEEEEECSSCEEEECCCCS---SCCSEEEEEEEETTCCSCCEEEE----E-ETTCCEEEECSCCTTCEEEEEEEEECT
T ss_pred             CCCEEEEeCCCEEEEEEEccc---eEecEEEEEEEcCCCCceeEEEE----e-CCCccEEEeCCCCCCCEEEEEEEEEeC
Confidence            478999999999999999874   47899999999876554332221    2 566789999999999999999999999


Q ss_pred             CCCCCCcc
Q psy11701        588 AGDGAESK  595 (745)
Q Consensus       588 ~G~g~~S~  595 (745)
                      .|.|+++.
T Consensus        73 ~g~s~~~s   80 (91)
T d1fnaa_          73 RGDSPASS   80 (91)
T ss_dssp             TCCSSCSC
T ss_pred             CccCCCcC
Confidence            99998754

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=9.2e-12  Score=98.90  Aligned_cols=91  Identities=19%  Similarity=0.162  Sum_probs=72.7

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCC-ceeEEEEccCceeEEEecccccCcceeE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG-SIRELIVNKGESTTTEVDKFVPASKNFA  478 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~~~~~Y~~  478 (745)
                      .||.+|.++.+.. .+.+++.|+|.++  .+.+++|.+|.|+|+....... ......+ ......+++.+|.+++.|.|
T Consensus         9 ~pP~~P~~~~v~~-~~~~sv~l~W~p~--~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~L~p~t~Y~f   84 (108)
T d1x4za1           9 SPPEAPDRPTIST-ASETSVYVTWIPR--GNGGFPIQSFRVEYKKLKKVGDWILATSAI-PPSRLSVEITGLEKGISYKF   84 (108)
T ss_dssp             CCCCCCCCCEEEE-CCSSEEEEECCCC--CCTTSCCCEEEEEEEESSSCCCCEEEEEEE-CTTCCEEEEESCCTTCEEEE
T ss_pred             CCCccCCCCEEEE-ccCCEEEEEEECC--CCCCCccEEEEEEEEecCCCCceEEEEEee-cCCccEEEECCCCCCCEEEE
Confidence            5789999999887 8899999999763  4566789999999987655322 2222333 56778899999999999999


Q ss_pred             EEEEecCCCCCCCCcc
Q psy11701        479 RVLAFNGAYNGPPSEI  494 (745)
Q Consensus       479 ~V~a~n~~G~g~~S~~  494 (745)
                      +|+|+|..|.|++|.+
T Consensus        85 rV~A~N~~G~s~~S~p  100 (108)
T d1x4za1          85 RVRALNMLGESEPSAP  100 (108)
T ss_dssp             EEEEEETTEECCCCCC
T ss_pred             EEEEECCCcCCCCCCC
Confidence            9999999999988763

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.2e-12  Score=103.56  Aligned_cols=104  Identities=16%  Similarity=0.185  Sum_probs=80.6

Q ss_pred             EEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcce
Q psy11701        397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKN  476 (745)
Q Consensus       397 ~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y  476 (745)
                      .+...|.+|.++.+.. .+.++|.|.|+++  .+.++++.+|.|+|+..... ..+..+.. ......++|.+|++++.|
T Consensus        11 ~~~~~P~pP~~~~v~~-~~~~sv~l~W~p~--~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~-~~~~~~~~v~~L~p~t~Y   85 (117)
T d1uema_          11 DLSDLPGPPSKPQVTD-VTKNSVTLSWQPG--TPGTLPASAYIIEAFSQSVS-NSWQTVAN-HVKTTLYTVRGLRPNTIY   85 (117)
T ss_dssp             CSCCSCBCCCCCEEEE-ECSSCEEEECCCC--BCSSSCCCEEEEEEEETTTE-EEEEEEEE-EECSSEEEECSCCTTCEE
T ss_pred             eeCccCcCCCCCEEEE-ccCCEEEEEEECC--CcCCCCeEEEEEEEeccCCc-eeeEEecc-ccccccceECCCCCCCEE
Confidence            3446688999999988 8999999999864  35667899999988765432 23333333 345678999999999999


Q ss_pred             eEEEEEecCCCCCCCCcce-EEeCCCCCCC
Q psy11701        477 FARVLAFNGAYNGPPSEII-SFVTPEGVPG  505 (745)
Q Consensus       477 ~~~V~a~n~~G~g~~S~~~-~~~t~~~~P~  505 (745)
                      .|+|+|+|..|.|++|... .++|.+.+|+
T Consensus        86 ~frV~A~N~~G~s~~S~~s~~v~t~~~~Ps  115 (117)
T d1uema_          86 LFMVRAINPQGLSDPSPMSDPVRTQDSGPS  115 (117)
T ss_dssp             EEEEEEEETTEEEEECCCCCCEECCCSSCC
T ss_pred             EEEEEEEeCCcCCCCcCCCcCEEeCCCCcC
Confidence            9999999999999888764 3677776664

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9e-13  Score=110.66  Aligned_cols=101  Identities=17%  Similarity=0.243  Sum_probs=73.6

Q ss_pred             EeCCCCCCCCCCceeEEEcCCceEEEEeeCCCCCCC---------ceeeEEEEEEEcCCcccCCcccccccccCCCccee
Q psy11701        497 FVTPEGVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG---------VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA  567 (745)
Q Consensus       497 ~~t~~~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g---------~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (745)
                      .++.+..|..+....+..++.+++.|+|++|...++         .+.+|.++|+.....  ..+..    +..+...++
T Consensus        11 ~~~~~~~~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~--~~~~~----~~~~~~~~~   84 (137)
T d1wk0a_          11 TKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKD--GKYKS----VYVGEETNI   84 (137)
T ss_dssp             HHHHHHHTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTT--SCCEE----EEEESCSEE
T ss_pred             EEEeccCCCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCC--ccEEE----EEecCccEE
Confidence            334445566666667888999999999999874332         467788888755432  22221    224567889


Q ss_pred             eecCCCCCccEEEEEEEEecCCCCCCcceeeecccC
Q psy11701        568 KLAGLEPSTKYRIHLAGYTKAGDGAESKYLFYVPFK  603 (745)
Q Consensus       568 ~l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~~~~~  603 (745)
                      +|.+|+|++.|.|+|+|+|..|.|++|..+.+.+..
T Consensus        85 ~i~~L~P~t~Y~f~V~A~n~~G~g~~S~~~~~~T~~  120 (137)
T d1wk0a_          85 TLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLS  120 (137)
T ss_dssp             EECSCCTTCEECEEEEEEETTEECCCCCCCCEECCC
T ss_pred             EECCCCCCcEEEEEEEEEcCCcccCCCCCEEEECCC
Confidence            999999999999999999999999999876555433

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.8e-12  Score=103.99  Aligned_cols=105  Identities=30%  Similarity=0.532  Sum_probs=85.0

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCc------eeEEEEccCceeEEEecccccC
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS------IRELIVNKGESTTTEVDKFVPA  473 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~L~~~  473 (745)
                      .|+.+|.++++.. .+.+++.|+|+++.....++.+.+|.+.++........      .....+ ......++|.+|.|+
T Consensus        13 ~P~~~P~~v~v~~-~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~   90 (125)
T d1uena_          13 LPMVAPGNVRVNV-VNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTF-QGSKTHGMLPGLEPF   90 (125)
T ss_dssp             CCCCCCSSCEEEE-EETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEE-ESSCSEEEEESCCSS
T ss_pred             CCCCCCcccEEEE-ecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEe-CCCccEEEECCCCCC
Confidence            5778899999988 88999999999876566678899999988775433221      122233 556778999999999


Q ss_pred             cceeEEEEEecCCCCCCCCcceEEeCCCCCCCC
Q psy11701        474 SKNFARVLAFNGAYNGPPSEIISFVTPEGVPGT  506 (745)
Q Consensus       474 ~~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~  506 (745)
                      +.|.|+|+|.|..|.|++|..+.++|.++.|.+
T Consensus        91 t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp~  123 (125)
T d1uena_          91 SHYTLNVRVVNGKGEGPASPDRVFNTPEGSGPS  123 (125)
T ss_dssp             CEEEEEEEEEESSCEEEECCCEEEECCCCCSSC
T ss_pred             CEEEEEEEEEeCCcccCCCCCEEEECCCCCcCC
Confidence            999999999999999999999999998877643

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.4e-11  Score=99.20  Aligned_cols=99  Identities=25%  Similarity=0.399  Sum_probs=78.6

Q ss_pred             ccCCCCCCceeEEe-ecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCc-eeEEEEccCceeEEEecccccCccee
Q psy11701        400 VPLEAPSNFTLIQV-IDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGS-IRELIVNKGESTTTEVDKFVPASKNF  477 (745)
Q Consensus       400 ~pp~~P~~~~~~~~-~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~~Y~  477 (745)
                      .|..+|.++.+... .+..+|.|+|+++  ...++.+.+|.+.|+........ +....+ ......++|.+|.+++.|.
T Consensus        10 ~P~~pP~~~~v~~~~~~~~sv~v~W~~P--~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~   86 (111)
T d1x5ka1          10 VPTSPPKDVTVVSKEGKPKTIIVNWQPP--SEANGKITGYIIYYSTDVNAEIHDWVIEPV-VGNRLTHQIQELTLDTPYY   86 (111)
T ss_dssp             CCCSCCEEEEEEECSSCTTCEEEEEECC--SCCSSCCCEEEEEEESCSSSCTTTSEEEEE-STTCSEEEECSCCSSSEEE
T ss_pred             CCCCCCCCcEEEEecCCCCEEEEEEEcc--ccCCCceeeeEEeeeecCCCCcceeEEEEe-CCCeeEEEECCCCCCCEEE
Confidence            46678888887541 3567899999974  35678999999998876654433 333444 6677889999999999999


Q ss_pred             EEEEEecCCCCCCCCcceEEeCCC
Q psy11701        478 ARVLAFNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       478 ~~V~a~n~~G~g~~S~~~~~~t~~  501 (745)
                      |+|+|.|..|.|++|..+.++|.+
T Consensus        87 ~~V~A~n~~G~g~~S~~v~~~T~~  110 (111)
T d1x5ka1          87 FKIQARNSKGMGPMSEAVQFRTPK  110 (111)
T ss_dssp             EEEEEECSSCBCCCCCCEEEECCC
T ss_pred             EEEEEEcCCCCcCCCCCEEEECCC
Confidence            999999999999999999999864

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.4e-12  Score=97.77  Aligned_cols=85  Identities=9%  Similarity=0.053  Sum_probs=68.6

Q ss_pred             CCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEE
Q psy11701        503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHL  582 (745)
Q Consensus       503 ~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V  582 (745)
                      +|++|.++++...+.+++.|+|++|.+.+ ..++|.|+|+..+...+....     ........+.+.+|.+++.|.|+|
T Consensus         3 PP~~P~n~~~~~~~~~si~~~W~p~~~~~-~~~~y~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~L~~~~~Y~f~V   76 (95)
T d1bqua1           3 PPEKPKNLSCIVNEGKKMRCEWDGGRETH-LETNFTLKSEWATHKFADCKA-----KRDTPTSCTVDYSTVYFVNIEVWV   76 (95)
T ss_dssp             CCCCCEEEEEEEETTSCCEEEEECCSCCS-SCCEEEEEEEETTEECCCEEC-----CSSCTTEEECSSCCCTTSCEEEEE
T ss_pred             CcCCCeeeEEEEccCCEEEEEEeCcccCC-CceEEEEEEEEcccceeEeec-----ccccceeeeeeeecCCCcEEEEEE
Confidence            68899999999999999999999987754 457999999987654332221     114455778889999999999999


Q ss_pred             EEEecCCCCCC
Q psy11701        583 AGYTKAGDGAE  593 (745)
Q Consensus       583 ~a~n~~G~g~~  593 (745)
                      .|.|.+|.|.+
T Consensus        77 ~A~N~~G~s~S   87 (95)
T d1bqua1          77 EAENALGKVTS   87 (95)
T ss_dssp             EEEETTEEEEC
T ss_pred             EEEeCCccccC
Confidence            99999998864

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.2e-12  Score=104.28  Aligned_cols=103  Identities=23%  Similarity=0.359  Sum_probs=78.1

Q ss_pred             CCCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeee
Q psy11701        605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTE  684 (745)
Q Consensus       605 ~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~  684 (745)
                      |.++.+....+++|.|+|++++....+|.|..|.+.|..............                             
T Consensus        18 P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----------------------------   68 (125)
T d1uena_          18 PGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHI-----------------------------   68 (125)
T ss_dssp             CSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCC-----------------------------
T ss_pred             CcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecc-----------------------------
Confidence            445555556788999999998888888999999999876533322111100                             


Q ss_pred             ecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCCCC
Q psy11701        685 KDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEGG  742 (745)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~~~  742 (745)
                            ........++...+.|.+|.|++.|.|+|+|.|..|.|++|+++.|+|+++.
T Consensus        69 ------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~  120 (125)
T d1uena_          69 ------EKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGS  120 (125)
T ss_dssp             ------CEEEEEEESSCSEEEEESCCSSCEEEEEEEEEESSCEEEECCCEEEECCCCC
T ss_pred             ------cceEEEeCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCCCCEEEECCCCC
Confidence                  0112223567889999999999999999999999999999999999998765

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-11  Score=95.95  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=76.0

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      .+|..+.+.. .+.++|.|.|+++  ...+|.+.+|.++++............   ......+++.+|.|++.|.|+|+|
T Consensus         2 ~~~~~l~~~~-~t~~si~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~~V~A   75 (95)
T d2djsa1           2 STVPIMHQVS-ATMRSITLSWPQP--EQPNGIILDYEIRYYEKEHNEFNSSMA---RSQTNTARIDGLRPGMVYVVQVRA   75 (95)
T ss_dssp             CCCSCCEEEE-ECSSEEEEECCCC--SCCSSCEEEEEEEEEETTSCSTTCEEE---EESSSEEEEESCCTTCEEEEEEEE
T ss_pred             CCCCccEEEe-ecCCEEEEEEEEC--CCCCcceEEeeeeeeeeccCcceeEee---cCCccEEEEeecCCccEEEEEEEE
Confidence            4455788888 8999999999984  356789999999998876654433322   346678999999999999999999


Q ss_pred             ecCCCCCCCCcceEEeCCC
Q psy11701        483 FNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       483 ~n~~G~g~~S~~~~~~t~~  501 (745)
                      .|..|.|++|..+.++|.+
T Consensus        76 ~n~~G~g~~S~~~~~~T~~   94 (95)
T d2djsa1          76 RTVAGYGKFSGKMCFQTLT   94 (95)
T ss_dssp             EESSCEEEECCCEEEECCC
T ss_pred             EcCCCCCCCCCCEEEEeCC
Confidence            9999999999999998864

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.2e-11  Score=94.81  Aligned_cols=84  Identities=17%  Similarity=0.323  Sum_probs=69.2

Q ss_pred             CCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEE
Q psy11701        506 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY  585 (745)
Q Consensus       506 ~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~  585 (745)
                      +|.++++..++.++|.|+|++|.   +.+.+|.|+|+......+.....    + ....++++|.+|.|++.|.|+|.|+
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p~---~~~~~~~i~~~~~~~~~~~~~~~----~-~~~~~~~~i~~L~p~t~Y~~~V~a~   73 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPPN---VQLTGYRVRVTPKEKTGPMKEIN----L-APDSSSVVVSGLMVATKYEVSVYAL   73 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEESSSCSCCCEEE----E-CTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCEEEEEecCCEEEEEEEccc---eeccceEEEEEeeeCCCceEEEE----e-CCCCeEEEEecccCceEEEEEEEEE
Confidence            57899999999999999999875   46889999998876654433221    2 5567899999999999999999999


Q ss_pred             ecCCCCCCccee
Q psy11701        586 TKAGDGAESKYL  597 (745)
Q Consensus       586 n~~G~g~~S~~~  597 (745)
                      |..|.|+++...
T Consensus        74 n~~g~s~~~~~~   85 (90)
T d1fnha1          74 KDTLTSRPAQGV   85 (90)
T ss_dssp             ETTEECCCEEEE
T ss_pred             eCCCCcCCEeEE
Confidence            999999997543

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.26  E-value=3e-12  Score=101.06  Aligned_cols=76  Identities=20%  Similarity=0.188  Sum_probs=62.5

Q ss_pred             eccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCC--CCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         39 TRKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINP--SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      +++.+.+.+|+++.|.|.+ .|.|.+.|.|+|||..+..  ..+......+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus        10 ~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~   88 (105)
T d1cs6a2          10 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT   88 (105)
T ss_dssp             CCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             CCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEE
Confidence            3456789999999999998 7889999999999977643  34455555566899999999999999999998776654

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.9e-12  Score=96.31  Aligned_cols=83  Identities=17%  Similarity=0.346  Sum_probs=67.9

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEE
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG  584 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a  584 (745)
                      .+|.+|++..++.++|.|+|++|.   +.+.+|+|+|+...........     ......+++.+.+|.|++.|.|+|.|
T Consensus         3 d~P~~l~v~~vt~~sv~l~W~~p~---~~~~~y~i~~~~~~~~~~~~~~-----~~~~~~~~~~i~~L~p~t~Y~~~V~a   74 (94)
T d1j8ka_           3 DRPKGLAFTDVDVDSIKIAWESPQ---GQVSRYRVTYSSPEDGIHELFP-----APDGEEDTAELQGLRPGSEYTVSVVA   74 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCS---SCCSCEEEEEEETTTEEEEECC-----CCCSSCCEEEECSCCCCSEEEEEEEE
T ss_pred             CCCCCCEEEEecCCEEEEEEeCCC---ccccceEEEEEeecCCCceEEE-----ecCCCccEEEECCCCCCCEEEEEEEE
Confidence            356899999999999999999874   4689999999987655332221     22567789999999999999999999


Q ss_pred             EecCCCCCCcc
Q psy11701        585 YTKAGDGAESK  595 (745)
Q Consensus       585 ~n~~G~g~~S~  595 (745)
                      .|..|.|.+..
T Consensus        75 ~~~~g~S~p~~   85 (94)
T d1j8ka_          75 LHDDMESQPLI   85 (94)
T ss_dssp             CSSSCCCCCEE
T ss_pred             EeCCCCcCCEE
Confidence            99999988853

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.9e-12  Score=96.75  Aligned_cols=91  Identities=15%  Similarity=0.024  Sum_probs=74.9

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEE
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL  481 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~  481 (745)
                      |.+|.++.+.. .+..++.|.|.++  .+.+++|.+|.|+|+.......  ....+ ......++|.+|.+++.|.|+|.
T Consensus         1 P~~P~~~~~~~-~~~~sv~l~W~~p--~~~~~~I~~Y~i~~~~~~~~~~--~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~   74 (93)
T d2vkwa2           1 PSAPKLEGQMG-EDGNSIKVNLIKQ--DDGGSPIRHYLVRYRALSSEWK--PEIRL-PSGSDHVMLKSLDWNAEYEVYVV   74 (93)
T ss_dssp             CCCCEEEEEEC-TTSSCEEEEEECC--CCTTSCCCEEEEEEEETTSCCC--CCEEE-CTTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCccCEeEE-cCCCEEEEEeeCC--CCCcCceEEEEEEeeecCccee--eeeec-cCCceEEEEeccccceEEEEEEE
Confidence            57898888877 8889999999985  3567889999999988765332  23344 56778999999999999999999


Q ss_pred             EecCCCCCCCCcceEEeC
Q psy11701        482 AFNGAYNGPPSEIISFVT  499 (745)
Q Consensus       482 a~n~~G~g~~S~~~~~~t  499 (745)
                      |+|..|.|+++. +.++|
T Consensus        75 A~N~~G~s~ps~-~~~~T   91 (93)
T d2vkwa2          75 AENQQGKSKAAH-FVFRT   91 (93)
T ss_dssp             EEETTEECCCEE-EEEEC
T ss_pred             EEcCCCCcCCEe-EEEEe
Confidence            999999999986 56766

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.4e-12  Score=99.08  Aligned_cols=88  Identities=20%  Similarity=0.214  Sum_probs=68.2

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe------ccC--------CcEEEEccCCCCC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ------GNY--------GKSLIIKHVEFSD   98 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~------~~~--------~~~L~i~~~~~~d   98 (745)
                      |.++........+.+|++++|.|.+.|.|.|.+.|++||..+........      ...        .+.|+|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            56655555566788899999999999999999999999999875443211      111        1379999999999


Q ss_pred             CE-EEEEEEEeCCeeeEEEEEEEE
Q psy11701         99 QG-SYTCEVSNGVGEAKSYSIDLS  121 (745)
Q Consensus        99 ~G-~Y~C~~~~~~g~~~~~~~~l~  121 (745)
                      .| .|+|.|.|..|... ..+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~-~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDA-AYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEE-EEEEEE
T ss_pred             CCcEEEEEEEeCCCeEE-EEEEEE
Confidence            99 59999999999876 445543

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.7e-12  Score=98.53  Aligned_cols=91  Identities=18%  Similarity=0.277  Sum_probs=70.2

Q ss_pred             EecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee------ecCceEEEccCCCCCCEEEE
Q psy11701        123 LAAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK------VGPNRITIENLRKSDTGNYG  196 (745)
Q Consensus       123 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~  196 (745)
                      ..||.+.....   ...+....|.|.+.|.|.|.++|+|||+.+..+.......      ...+.|.|.+++..|+|.|+
T Consensus         2 ~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (103)
T d1wwbx_           2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             ccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEE
Confidence            34666543221   2467888999999999999999999999997543221111      11247999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEEee
Q psy11701        197 CNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       197 C~~~~~~g~~~~~~~l~v~~  216 (745)
                      |.|+|..|.....+.|.|..
T Consensus        79 C~a~N~~G~~~~~~~v~V~~   98 (103)
T d1wwbx_          79 LIAKNEYGKDEKQISAHFMG   98 (103)
T ss_dssp             EEEECSSCEEEEEEEECCSC
T ss_pred             EEEeccCCEEEEEEEEEEEe
Confidence            99999999999999998875

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=8e-12  Score=98.46  Aligned_cols=89  Identities=21%  Similarity=0.450  Sum_probs=68.7

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccC---------CCCCCceeecCceEEEccCCCCCCEEEE
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ---------APPNPRRKVGPNRITIENLRKSDTGNYG  196 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~---------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  196 (745)
                      |.+...+....+.+|++++|.|.+.|.|.+.+.|++++.....         .....+....+++|.|.+++.+|+|.|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            4556667788899999999999999999999999985433211         1112233445678999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEE
Q psy11701        197 CNATNSLGYVYKDVYVNV  214 (745)
Q Consensus       197 C~~~~~~g~~~~~~~l~v  214 (745)
                      |.|.|..|.....+.+.|
T Consensus        82 C~a~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHL   99 (102)
T ss_dssp             EEEEETTSSSEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEE
Confidence            999999998777665554

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=1.5e-11  Score=97.06  Aligned_cols=89  Identities=18%  Similarity=0.200  Sum_probs=68.7

Q ss_pred             CCCCCCceeEE----EcCCceEEEEeeCCCC----CCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCC
Q psy11701        503 VPGTVQSLEAI----PLGSSAFYLKWVKPEQ----PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP  574 (745)
Q Consensus       503 ~P~~p~~~~~~----~~~~~~i~l~W~~p~~----~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p  574 (745)
                      .|.||.++.+.    ....++|.|+|++|..    .++.+.+|.|+|+..+...+....       ....+.+.+.+|.|
T Consensus         2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~-------~~~~~~~~i~~L~p   74 (103)
T d1f6fb2           2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHF-------TGHQTQFKVFDLYP   74 (103)
T ss_dssp             CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEE-------EETCSEEEECCCCT
T ss_pred             CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeec-------ccceeEEEeCCCCc
Confidence            47888888774    3467789999999853    345789999999988766553322       33567999999999


Q ss_pred             CccEEEEEEEEecCCC-CCCcceee
Q psy11701        575 STKYRIHLAGYTKAGD-GAESKYLF  598 (745)
Q Consensus       575 ~t~Y~~~V~a~n~~G~-g~~S~~~~  598 (745)
                      ++.|.|+|+|.|..|. |.+|+.+.
T Consensus        75 ~t~Y~~rVra~~~~G~wS~wS~~~~   99 (103)
T d1f6fb2          75 GQKYLVQTRCKPDHGYWSRWSQESS   99 (103)
T ss_dssp             TCEEEEEEEEEESSSCCCCCCCCEE
T ss_pred             ceEEEEEEEEEeCCCCCCCCcCcee
Confidence            9999999999999996 77776654

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8.6e-12  Score=96.62  Aligned_cols=96  Identities=23%  Similarity=0.208  Sum_probs=71.6

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV  480 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V  480 (745)
                      ||.+|....+......++|.|+|+++ ..+.+.+|++|.|+|+......  +..+ . ......++|.+|.+++.|.|+|
T Consensus         1 PP~p~~pp~~~~~~~~~sv~l~W~~P-~~~gg~~i~~Y~v~~~~~~~~~--~~~~-~-~~~~~~~~v~~L~p~t~Y~frV   75 (97)
T d2crza1           1 PPGPCLPPRLQGRPKAKEIQLRWGPP-LVDGGSPISCYSVEMSPIEKDE--PREV-Y-QGSEVECTVSSLLPGKTYSFRL   75 (97)
T ss_dssp             CCCCCCCCEECSCCCSSEEEEECCCC-SCCTTSCCCEEEEEEECTTSCC--CEEE-E-EESCSEEEEESCCTTCEEEECC
T ss_pred             CcCcCCCCEEeeeeeCCEEEEEEeCC-CcCCCCceeEEEEEEEcCcCCc--eeEe-e-cCCceEEEEcCCCCCEEEEEEE
Confidence            45555554443324678999999974 3344457999999987665432  3322 2 3456789999999999999999


Q ss_pred             EEecCCCCCCCCcceEEeCCC
Q psy11701        481 LAFNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       481 ~a~n~~G~g~~S~~~~~~t~~  501 (745)
                      +|.|..|.|++|....++|.+
T Consensus        76 ~A~N~~G~s~~S~~~~~~T~p   96 (97)
T d2crza1          76 RAANKMGFGPFSEKCDITTAP   96 (97)
T ss_dssp             EEECSSCBCCCCCCEEEECCC
T ss_pred             EEecCCeEcCCcCCCeEEeCc
Confidence            999999999999999988753

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-12  Score=104.14  Aligned_cols=83  Identities=24%  Similarity=0.439  Sum_probs=64.2

Q ss_pred             ccceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCCCCCe---------EeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         40 RKKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPSDRI---------SQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~~~~---------~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .....+.+|++++|.|.+ .|.|.+.+.|+|++..+....+.         ......+.|.|.+++.+|.|.|+|.|.|.
T Consensus         9 ~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~   88 (104)
T d1nbqa2           9 NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG   88 (104)
T ss_dssp             CCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECS
T ss_pred             CCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEEC
Confidence            344568899999999998 58999999999999988654332         12233457999999999999999999999


Q ss_pred             CeeeE-EEEEEEEE
Q psy11701        110 VGEAK-SYSIDLSV  122 (745)
Q Consensus       110 ~g~~~-~~~~~l~V  122 (745)
                      .|... +..+.|.|
T Consensus        89 ~G~~~~s~~v~v~v  102 (104)
T d1nbqa2          89 YGTPMTSNAVRMEA  102 (104)
T ss_dssp             SSCCEECCCBCCEE
T ss_pred             CCceEEEEEEEEEE
Confidence            98776 23344444

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.6e-12  Score=102.65  Aligned_cols=84  Identities=21%  Similarity=0.344  Sum_probs=65.9

Q ss_pred             cCCceEEEEeeCCCCCCCceeeEEEEEEEcCCccc-CCcccccccccCCCcceeeecCCCCCccEEEEEEEEecCCCCCC
Q psy11701        515 LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV-GPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAE  593 (745)
Q Consensus       515 ~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~n~~G~g~~  593 (745)
                      ++.++|.|+|++|.. ++.|.+|.|+|+..+.... ..+...  .+......++.|.+|+|++.|+|+|.|+|..|.|++
T Consensus        27 ~s~tsi~v~W~~p~~-~~~i~gY~v~y~~~~~~~~~~~~~~~--~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~  103 (120)
T d1ujta_          27 LTPTTVQVTWTVDRQ-PQFIQGYRVMYRQTSGLQATSSWQNL--DAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMD  103 (120)
T ss_dssp             CBTTEEEEEEEESSC-CSSCCEEEEEEEESSSSSTTTCCEEE--ECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCC
T ss_pred             eCCCeEEEEecCCCC-CCcEEEEEEEeeecccCCCCcceEEE--EeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcCC
Confidence            578999999998864 6789999999998765422 223221  133566789999999999999999999999999999


Q ss_pred             cceeeecc
Q psy11701        594 SKYLFYVP  601 (745)
Q Consensus       594 S~~~~~~~  601 (745)
                      |..+...+
T Consensus       104 S~~~~~~T  111 (120)
T d1ujta_         104 SESKTVRT  111 (120)
T ss_dssp             CCCEEEEE
T ss_pred             CCCEEEEe
Confidence            98765443

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.2e-12  Score=106.36  Aligned_cols=96  Identities=19%  Similarity=0.250  Sum_probs=71.4

Q ss_pred             CCCCceeEEEcCCceEEEEeeCCCC-CCCceeeEEEEEEEcCCcccCCccc------------------ccccccCCCcc
Q psy11701        505 GTVQSLEAIPLGSSAFYLKWVKPEQ-PNGVLMGYKIKYQSVKGTKVGPLLE------------------RLPYISDPTTT  565 (745)
Q Consensus       505 ~~p~~~~~~~~~~~~i~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~  565 (745)
                      ++|.+|.+...+.++|.|+|++|.. .+|.|.||.|+|+............                  ..........+
T Consensus         3 s~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T d2dtge3           3 NELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP   82 (125)
T ss_dssp             CCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred             CCCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence            4678999999999999999999874 4578999999998765432111100                  00011245668


Q ss_pred             eeeecCCCCCccEEEEEEEEecCCC-----CCCcceeeec
Q psy11701        566 SAKLAGLEPSTKYRIHLAGYTKAGD-----GAESKYLFYV  600 (745)
Q Consensus       566 ~~~l~~L~p~t~Y~~~V~a~n~~G~-----g~~S~~~~~~  600 (745)
                      +++|.+|+|++.|.|+|.|+|.+|.     |+.|+.+.+.
T Consensus        83 ~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~  122 (125)
T d2dtge3          83 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQ  122 (125)
T ss_dssp             EEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCB
T ss_pred             EEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEEE
Confidence            8999999999999999999999995     6777665443

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.3e-12  Score=98.82  Aligned_cols=98  Identities=16%  Similarity=0.155  Sum_probs=79.9

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .+|.+|.++.+.. .+.++|.|+|+++ ..+.++.+.+|.|.|+..+..... . ..........++|.+|.+++.|.|+
T Consensus         9 ~~P~~P~~l~~~~-~~~~sv~lsW~~P-~~~~~~~i~~Y~v~~~~~~~~~~~-~-~~~~~~~~~~~~~~~L~p~t~Y~~r   84 (107)
T d1x5fa1           9 PLPSAPRDVVASL-VSTRFIKLTWRTP-ASDPHGDNLTYSVFYTKEGIARER-V-ENTSHPGEMQVTIQNLMPATVYIFR   84 (107)
T ss_dssp             CCCCCCEEEEEEE-ECSSCEEEEEECC-SSCSSCCSSEEEEEEEETTCCCCE-E-EECSSTTCSEEEECSCCTTCEEEEE
T ss_pred             CCCcCCCccEEEE-ecCCEEEEEEECC-ccCCCCceEEEEEEEEeCCCCceE-E-EEEeCCCccEEEecCCCCCCEEEEE
Confidence            4578999999988 8999999999985 445678899999988776543322 2 2222567788999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCCC
Q psy11701        480 VLAFNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~~  501 (745)
                      |+|.|..|.|++|..+.++|.+
T Consensus        85 V~A~n~~G~g~~S~~i~v~T~~  106 (107)
T d1x5fa1          85 VMAQNKHGSGESSAPLRVETQP  106 (107)
T ss_dssp             EEEECSSCEEEECCCEEEECCC
T ss_pred             EEEEeCCCCcCCCCCEEEECCC
Confidence            9999999999999999998854

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.25  E-value=7.1e-12  Score=98.36  Aligned_cols=93  Identities=24%  Similarity=0.192  Sum_probs=72.1

Q ss_pred             EeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCccee
Q psy11701        398 VQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNF  477 (745)
Q Consensus       398 v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~  477 (745)
                      |+..|.+|.++.+.  ...+++.|+|+++  .+.++++.+|.|+|+.............. .....++.+.+|.+++.|.
T Consensus         2 V~dvP~~P~~~~v~--~~~~sv~lsW~pp--~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~p~t~Y~   76 (100)
T d1cfba1           2 VQDVPNAPKLTGIT--CQADKAEIHWEQQ--GDNRSPILHYTIQFNTSFTPASWDAAYEK-VPNTDSSFVVQMSPWANYT   76 (100)
T ss_dssp             CCCCCCCCEEEEEE--ECSSEEEEEEECC--CCTTSCCCEEEEEEEESSSTTCCEEEEEE-EETTCSEEEEECCSSEEEE
T ss_pred             cccCCCcCcCcEEE--EcCCEEEEEEcCC--cccccceEEEEEEEecCCCCceeeEEeee-cCCceEEEEecCCCCCEEE
Confidence            45678999999875  4667899999974  34678899999999876554433332322 3456678999999999999


Q ss_pred             EEEEEecCCCCCCCCcce
Q psy11701        478 ARVLAFNGAYNGPPSEII  495 (745)
Q Consensus       478 ~~V~a~n~~G~g~~S~~~  495 (745)
                      |+|+|.|..|.|++|...
T Consensus        77 frV~A~n~~G~g~~S~~s   94 (100)
T d1cfba1          77 FRVIAFNKIGASPPSAHS   94 (100)
T ss_dssp             EEEEEEETTEECCCCCCC
T ss_pred             EEEEEEeCCcCCCCcCCC
Confidence            999999999999988643

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-11  Score=97.94  Aligned_cols=82  Identities=18%  Similarity=0.253  Sum_probs=62.5

Q ss_pred             CCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEE
Q psy11701        614 TPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIRE  693 (745)
Q Consensus       614 ~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~  693 (745)
                      ..+++.|+|++|.. ..+..+..|.|+|+.......                                           .
T Consensus        24 ~~~sv~l~W~~P~~-~~g~~~~~y~v~~~~~~~~~~-------------------------------------------~   59 (107)
T d2crma1          24 HSHSFKITWDPPKD-NGGATINKYVVEMAEGSNGNK-------------------------------------------W   59 (107)
T ss_dssp             ETTEEEEECCCCTT-CCSSCCCEEEEEEEESSSSCC-------------------------------------------C
T ss_pred             cCCEEEEEEEECcc-CCcceEEEEEEEEEeecCCCc-------------------------------------------E
Confidence            35788999986543 334467889998875433221                                           1


Q ss_pred             EEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCC
Q psy11701        694 LIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP  739 (745)
Q Consensus       694 ~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~  739 (745)
                      ........+.+.+.+|+|++.|.|+|+|.|.+|.|++|+++.++|+
T Consensus        60 ~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~s~~S~~v~v~Tp  105 (107)
T d2crma1          60 EMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP  105 (107)
T ss_dssp             EEEECSSCSEEEECSCCTTSCEEEEEEEEETTEECCCCCCCCCCCC
T ss_pred             EEeecCCccEEEEeccCCCCEEEEEEEEECCCcCcCCCCcEEEECC
Confidence            1122456788999999999999999999999999999999999986

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=7.5e-12  Score=97.16  Aligned_cols=83  Identities=16%  Similarity=0.390  Sum_probs=67.0

Q ss_pred             CceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEE-EE
Q psy11701        132 PEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK-DV  210 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~-~~  210 (745)
                      +.+..+.+|++++|.|.+.+ +.+.+.|+++|+.+...... ......+.|.|.+++.+|+|.|+|.|.|..|...+ .+
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~-~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~   87 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERM-TLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSI   87 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTE-EEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCC
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccce-eccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeE
Confidence            45667899999999999876 56799999999998754322 23335678999999999999999999999887654 47


Q ss_pred             EEEEee
Q psy11701        211 YVNVLA  216 (745)
Q Consensus       211 ~l~v~~  216 (745)
                      .|.|..
T Consensus        88 ~L~V~~   93 (96)
T d1l6za2          88 KLDIIF   93 (96)
T ss_dssp             EEEECC
T ss_pred             EEEEEc
Confidence            888864

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.3e-12  Score=102.69  Aligned_cols=94  Identities=19%  Similarity=0.122  Sum_probs=70.3

Q ss_pred             CCCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeee
Q psy11701        605 PDNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTE  684 (745)
Q Consensus       605 ~~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~  684 (745)
                      |..+.+....++++.|+|++|.  ..||.|.+|+|+|+............                              
T Consensus         8 P~~v~~~~~~~~sv~l~W~pP~--~~ng~i~~Y~v~y~~~~~~~~~~~~~------------------------------   55 (102)
T d2dtge1           8 VGPVTHEIFENNVVHLMWQEPK--EPNGLIVLYEVSYRRYGDEELHLCDT------------------------------   55 (102)
T ss_dssp             CCCCCCCSSSSSCCCCCCCCCC--SCSSCEEEECCCCBSSSBCCCCCCCC------------------------------
T ss_pred             CCCCEEEEECCCEEEEEEEeCC--CCcceEEEeeeEEEecCCCCceeeee------------------------------
Confidence            3344455567899999998654  46889999999998764322111000                              


Q ss_pred             ecCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCCC
Q psy11701        685 KDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPEG  741 (745)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~~  741 (745)
                                .........+.+.+|+|++ |.|+|+|.|.+|.|++|+++.|.|+|.
T Consensus        56 ----------~~~~~~~~~~~~~~L~~~t-Y~~rV~A~n~~G~g~~S~~v~f~~~e~  101 (102)
T d2dtge1          56 ----------RKHFALERGCRLRGLSPGN-YSVRIRATSLAGNGSWTEPTYFYVTDY  101 (102)
T ss_dssp             ----------SSSCCCTTCCCCCSCCSSE-ECCCCCEEETTBCCCCCCCCEECCCCC
T ss_pred             ----------eecccceEEEEEeccceee-EEEEEEEEcCCccCCCCCCEEEEccCC
Confidence                      0013466778899999985 999999999999999999999999986

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.2e-12  Score=103.74  Aligned_cols=92  Identities=23%  Similarity=0.364  Sum_probs=71.7

Q ss_pred             ecCeEE-----ecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCC--------------------------
Q psy11701        124 AAPYFT-----VEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPN--------------------------  172 (745)
Q Consensus       124 ~~p~~~-----~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~--------------------------  172 (745)
                      .||.+.     ..|....+.+|++++|.|.+.|.|.+.+.|++++..+......                          
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            466653     3466788999999999999999999999999987766422110                          


Q ss_pred             Ccee----ecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        173 PRRK----VGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       173 ~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      .+..    .....|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            0010    122469999999999999999999999999998888875

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4e-12  Score=101.07  Aligned_cols=88  Identities=24%  Similarity=0.461  Sum_probs=68.1

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccC---------CCCCCceeecCceEEEccCCCCCCEEEEE
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQ---------APPNPRRKVGPNRITIENLRKSDTGNYGC  197 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~---------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  197 (745)
                      .+...+....+.+|+++.|.|.+.|.|.+.+.|+|++..+..         .....+....++.|.|.+++.+|+|.|+|
T Consensus         6 ~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (105)
T d1nbqa1           6 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTC   85 (105)
T ss_dssp             EEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEE
T ss_pred             EEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEE
Confidence            344456677899999999999999999999999997654321         11122333446789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEE
Q psy11701        198 NATNSLGYVYKDVYVNV  214 (745)
Q Consensus       198 ~~~~~~g~~~~~~~l~v  214 (745)
                      .|.|..|.....+.|.+
T Consensus        86 ~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          86 MVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEEETTSSCEECCEEEC
T ss_pred             EEEECCCCEEEEEEEEE
Confidence            99999998877766554

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.3e-11  Score=97.51  Aligned_cols=87  Identities=18%  Similarity=0.224  Sum_probs=66.8

Q ss_pred             CCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeE
Q psy11701        613 STPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIR  692 (745)
Q Consensus       613 ~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~  692 (745)
                      ..+++|.|+|+++.   .++.|.+|+|.|++.......                                      ....
T Consensus        27 ~s~tsi~v~W~~p~---~~~~i~gY~v~y~~~~~~~~~--------------------------------------~~~~   65 (120)
T d1ujta_          27 LTPTTVQVTWTVDR---QPQFIQGYRVMYRQTSGLQAT--------------------------------------SSWQ   65 (120)
T ss_dssp             CBTTEEEEEEEESS---CCSSCCEEEEEEEESSSSSTT--------------------------------------TCCE
T ss_pred             eCCCeEEEEecCCC---CCCcEEEEEEEeeecccCCCC--------------------------------------cceE
Confidence            56799999999764   356889999999876332211                                      0011


Q ss_pred             EEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCC
Q psy11701        693 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE  740 (745)
Q Consensus       693 ~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~  740 (745)
                      ...+...+.+++.|.+|+|++.|.|+|+|+|..|.|++|+++.++|.+
T Consensus        66 ~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~S~~~~~~T~e  113 (120)
T d1ujta_          66 NLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE  113 (120)
T ss_dssp             EEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCCCCCEEEEECS
T ss_pred             EEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcCCCCCEEEEeCC
Confidence            122224567889999999999999999999999999999999999865

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.24  E-value=7.2e-13  Score=100.84  Aligned_cols=82  Identities=15%  Similarity=0.182  Sum_probs=66.9

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCC--cEEEEccCCCCCCEEEEEEEEeCCeee
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYG--KSLIIKHVEFSDQGSYTCEVSNGVGEA  113 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~  113 (745)
                      +..++++..+.+|+++.|.|.+ +.|.+.+.|+|||.+|..+.++.+...+  ..|.|.+++.+|+|.|+|.|.+..+  
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~--   80 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS--   80 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC--
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE--
Confidence            4566789999999999999998 4788899999999999988877654443  4899999999999999999966432  


Q ss_pred             EEEEEEEEEE
Q psy11701        114 KSYSIDLSVL  123 (745)
Q Consensus       114 ~~~~~~l~V~  123 (745)
                         ++.|.|.
T Consensus        81 ---sa~l~V~   87 (89)
T d1tiua_          81 ---AANLKVK   87 (89)
T ss_dssp             ---CEEEEEE
T ss_pred             ---EEEEEEE
Confidence               3455554

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.9e-11  Score=94.40  Aligned_cols=91  Identities=22%  Similarity=0.249  Sum_probs=73.8

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEE
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL  481 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~  481 (745)
                      |.+|.++.+.. .+.+++.|.|+++.  ..++.+.+|.|+|+......  +  ... ......++|.+|.+++.|.|+|+
T Consensus         1 P~~P~~~~v~~-~s~~si~l~W~~p~--~~~~~i~~Y~v~~~~~~~~~--~--~~~-~~~~~~~~i~~L~p~t~Y~~~V~   72 (93)
T d1x4xa1           1 PDQCKPPQVTC-RSATCAQVNWEVPL--SNGTDVTEYRLEWGGVEGSM--Q--ICY-CGPGLSYEIKGLSPATTYYCRVQ   72 (93)
T ss_dssp             CCCCCCCCCEE-EETTEEEEECCCCS--CSSSCCCEEEEEEESSTTSC--C--EEE-EESCSEEEEESCCSSCEEEEEEE
T ss_pred             CcCCCCCEEEE-eCCCeEEEEEEecc--cCCCeeEEEEEEEccCCCcc--e--Eee-cCCccEEEEcccceeeEEEEEEE
Confidence            56777888877 88999999999853  45678999999887654432  2  222 34677899999999999999999


Q ss_pred             EecCCCCCCCCcceEEeCC
Q psy11701        482 AFNGAYNGPPSEIISFVTP  500 (745)
Q Consensus       482 a~n~~G~g~~S~~~~~~t~  500 (745)
                      |.|..|.|++|..+.++|.
T Consensus        73 A~n~~G~s~~S~~~~~~Tp   91 (93)
T d1x4xa1          73 ALSVVGAGPFSEVVACVTP   91 (93)
T ss_dssp             EECSSCCCCBCCCEEEECC
T ss_pred             EEECCcCcCCCCcEEEEeC
Confidence            9999999999999999874

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.7e-12  Score=100.50  Aligned_cols=94  Identities=9%  Similarity=0.091  Sum_probs=70.0

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEee-cCCC--eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGG-TPLP--QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g-~p~~--~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      .|..+.+.+....+.+|++++|.|.+.| .|.+  ++.|+|++..|...... .....+.|.|..+..+|.|.|+|+|.|
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~-~~~~~s~l~i~~~~~dd~g~ytC~A~n   81 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV-GEPAEVTTTVLVRRDHHGAQFSCRTEL   81 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC-TTTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc-cccceEEEEEeeehhHCCCEEEEEEEe
Confidence            4777888888899999999999999976 4655  68899999988632211 112234799999999999999999999


Q ss_pred             CCeeeEEEEEEEEEEecCe
Q psy11701        109 GVGEAKSYSIDLSVLAAPY  127 (745)
Q Consensus       109 ~~g~~~~~~~~l~V~~~p~  127 (745)
                      ..|... ..+.+.+..++.
T Consensus        82 ~~g~~~-~~~~~~~s~p~~   99 (103)
T d1iama1          82 DLRPQG-LELFENTSAPYQ   99 (103)
T ss_dssp             ECGGGT-SCEEEEECCCEE
T ss_pred             CCCCcc-CeEeeeEcCCCE
Confidence            877654 334555554443

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.2e-11  Score=96.44  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=77.3

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .+|.+|.++++.. .+.+++.|+|.++  ...++++.+|.|+++...... .. .... ......+.+.+|.+++.|.|+
T Consensus         9 ~~P~~P~~~~~~~-~~~~sv~l~W~pp--~~~~~~i~~Y~i~~~~~~~~~-~~-~~~~-~~~~~~~~~~~L~p~t~Y~fr   82 (105)
T d1x3da1           9 CEPDIPNPPRIAN-RTKNSLTLQWKAP--SDNGSKIQNFVLEWDEGKGNG-EF-CQCY-MGSQKQFKITKLSPAMGCKFR   82 (105)
T ss_dssp             SCCCCCCCCEEEE-EETTEEEEECCCC--CCCSSCEEEEEEEECTTTSSS-CC-EEEE-EESCSEEEEESCCTTCEEEEE
T ss_pred             CCCcCCCCCEEEE-ccCCEEEEEEECC--CCCcCccEEEEEEEecCCCcc-ee-EEEe-cCCccEEEecCCcCCcEEEEE
Confidence            5678899999988 8999999999985  356678999999887554432 22 2222 456778999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCC
Q psy11701        480 VLAFNGAYNGPPSEIISFVTP  500 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~  500 (745)
                      |+|.|..|.|++|..+.+.|.
T Consensus        83 V~A~N~~G~s~~S~~~~~~T~  103 (105)
T d1x3da1          83 LSARNDYGTSGFSEEVLYYTS  103 (105)
T ss_dssp             CCEEESSCBCCCCCCEEEECS
T ss_pred             EEEECCCeEcCCCCcEEEECC
Confidence            999999999999999988874

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3e-12  Score=97.83  Aligned_cols=79  Identities=20%  Similarity=0.414  Sum_probs=64.9

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCC-CeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPE-PEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .+|.+...+....+.+|+++.|.|.+.+.|. ++|+|+|+|..+....  ......+.+|.|.+++.+|+|.|+|.|.|.
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP--SRWAGMGRRLLLRSVQLHDSGNYSCYRAGR   82 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCC--EEEEEESSEEEECSCCGGGCEEEEEESSSS
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEcccccccee--eEEecCCCEEEECCCChhcCEEEEEEECCc
Confidence            4677888888899999999999999988665 5999999998886432  233445779999999999999999999876


Q ss_pred             Cc
Q psy11701        203 LG  204 (745)
Q Consensus       203 ~g  204 (745)
                      .+
T Consensus        83 ~~   84 (93)
T d1n26a1          83 PA   84 (93)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.8e-11  Score=95.23  Aligned_cols=89  Identities=15%  Similarity=0.244  Sum_probs=72.3

Q ss_pred             cCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCC-CCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy11701        131 EPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAP-PNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYK  208 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~  208 (745)
                      .|......+|+.+.|.|.+. +.|.+.+.|+|+|..+.... ...+.....+.|.|.+++.+|+|.|+|.|.|..|....
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   87 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI   87 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEE
Confidence            34555678899999999885 67889999999987665332 23345556789999999999999999999999999999


Q ss_pred             EEEEEEeecCC
Q psy11701        209 DVYVNVLAHAP  219 (745)
Q Consensus       209 ~~~l~v~~~~p  219 (745)
                      .+.|.|....|
T Consensus        88 ~~~L~V~~~~p   98 (101)
T d1iray1          88 KISAKFVENEP   98 (101)
T ss_dssp             EEEEEEECCCT
T ss_pred             EEEEEEEeCCC
Confidence            99999986444

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.23  E-value=6.5e-12  Score=99.12  Aligned_cols=78  Identities=24%  Similarity=0.394  Sum_probs=63.3

Q ss_pred             CceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCcee-ecCceEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy11701        132 PEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRRK-VGPNRITIENLRKSDTGNYGCNATNSLGYVYKD  209 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~  209 (745)
                      +....+.+|+++.|.|.+ .+.|.+.+.|+|+|..+.......... ..++.|.|.++..+|+|.|+|.|.|..|....+
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            455789999999999997 688999999999998776443333332 346789999999999999999999988876654

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.3e-11  Score=94.83  Aligned_cols=95  Identities=20%  Similarity=0.223  Sum_probs=73.9

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEE
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL  481 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~  481 (745)
                      |.+|.++.+.. .+.+++.|.|+++. ...+..+.+|.++++......  +..... ......++|.+|.+++.|.|+|+
T Consensus         1 P~~P~~~~v~~-~~~~si~l~W~~p~-~~~~~~~~~y~~~~~~~~~~~--~~~~~~-~~~~~~~~v~~L~p~t~Y~~rV~   75 (96)
T d1x5xa1           1 PSMPASPVLTK-AGITWLSLQWSKPS-GTPSDEGISYILEMEEETSGY--GFKPKY-DGEDLAYTVKNLRRSTKYKFKVI   75 (96)
T ss_dssp             CCCCCCCEEEE-ECSSEEEEECCCCS-SCCSSSSCEEEEEECCSSSSC--CCEEEE-EESCSEEEEESCCSSCEEEEEEE
T ss_pred             CccCCCCEEEE-ecCCEEEEEEEeec-ccCcceEeeeEEEeeecccee--eeEEee-cCCCCEEEECCCCCCCEEEEEEE
Confidence            56788888887 89999999999843 334446778888765544332  222333 44677899999999999999999


Q ss_pred             EecCCCCCCCCcceEEeCCC
Q psy11701        482 AFNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       482 a~n~~G~g~~S~~~~~~t~~  501 (745)
                      |.|..|.|++|..+.++|.+
T Consensus        76 A~n~~G~s~~S~~~~~~T~p   95 (96)
T d1x5xa1          76 AYNSEGKSNPSEVVEFTTCP   95 (96)
T ss_dssp             EECSSCEEEECCCEEEECCC
T ss_pred             EEcCCcEeCCCCCEEEEeCc
Confidence            99999999999999998864

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.9e-12  Score=94.38  Aligned_cols=77  Identities=21%  Similarity=0.275  Sum_probs=59.1

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCC-eeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLP-QTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK  114 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~  114 (745)
                      +.+.|....+.+|++++|.|.+.+.|.+ .+.|++++..+.        ..+..|.|.+++.+|+|.|+|.|.+..+.  
T Consensus         4 It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~v~~~d~G~Y~C~a~~s~~S--   73 (82)
T d1f2qa1           4 VSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE--------ETNSSLNIVNAKFEDSGEYKCQHQQVNES--   73 (82)
T ss_dssp             CEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECS--------CCSSEEEECSCCGGGCEEEEEECTTSSCC--
T ss_pred             EEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeee--------cccceeEECCCChhhCCcEEEEecCCCCc--
Confidence            3457888889999999999999998877 456788998886        34567999999999999999999765433  


Q ss_pred             EEEEEEEEE
Q psy11701        115 SYSIDLSVL  123 (745)
Q Consensus       115 ~~~~~l~V~  123 (745)
                       ..+.|.|.
T Consensus        74 -~~v~l~V~   81 (82)
T d1f2qa1          74 -EPVYLEVF   81 (82)
T ss_dssp             -CCEEEEEE
T ss_pred             -ccEEEEEE
Confidence             44666664

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=9.7e-12  Score=99.63  Aligned_cols=92  Identities=16%  Similarity=0.331  Sum_probs=65.9

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEe-ecCCCeEEEEeCCEeccCCCCCCc---------eeecCceEEEccCCCCCCEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKAS-GLPEPEIHWVHNGKPISQAPPNPR---------RKVGPNRITIENLRKSDTGN  194 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~g~~~~~~~~~~~---------~~~~~~~L~i~~v~~~d~G~  194 (745)
                      ||.+........+.+|+++.|.|.+. |.|.+.++|+|++..+........         .....+.|.|.+++.+|+|.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   81 (110)
T d1f97a2           2 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE   81 (110)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEE
T ss_pred             CCccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEE
Confidence            34433333334688999999999984 799999999999988764332111         11234589999999999999


Q ss_pred             EEEEEEeCCceEEEE--EEEEEee
Q psy11701        195 YGCNATNSLGYVYKD--VYVNVLA  216 (745)
Q Consensus       195 Y~C~~~~~~g~~~~~--~~l~v~~  216 (745)
                      |+|.|.|..|....+  +.|.|..
T Consensus        82 Y~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          82 YYCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             EEEEEECSSSCCEECCCEEEEEES
T ss_pred             EEEEEEECCCcEEEEEEEEEEEEe
Confidence            999999999987654  5566653

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2e-12  Score=102.62  Aligned_cols=88  Identities=24%  Similarity=0.418  Sum_probs=68.3

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCCCCce--------eecCceEEEccCCCCCCEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPPNPRR--------KVGPNRITIENLRKSDTGNY  195 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~~~~~--------~~~~~~L~i~~v~~~d~G~Y  195 (745)
                      ||.+........+.+|++++|.|.+ .|.|.+.+.|+|+|..+.........        ....+.|.|.++..+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            5655555556678999999999998 57999999999999988654322111        12346899999999999999


Q ss_pred             EEEEEeCCceEEEEEEE
Q psy11701        196 GCNATNSLGYVYKDVYV  212 (745)
Q Consensus       196 ~C~~~~~~g~~~~~~~l  212 (745)
                      +|.|.|..|....++.+
T Consensus        82 ~C~a~N~~G~~~~s~~v   98 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAV   98 (104)
T ss_dssp             EEEEECSSSCCEECCCB
T ss_pred             EEEEEECCCceEEEEEE
Confidence            99999999987765443

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.6e-11  Score=95.33  Aligned_cols=88  Identities=17%  Similarity=0.177  Sum_probs=63.4

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe---CCEeccCCCCCCcee--ecCceEEEccCCCCCCEEEEEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVH---NGKPISQAPPNPRRK--VGPNRITIENLRKSDTGNYGCNA  199 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~---~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~  199 (745)
                      +|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++   ++..+... ......  ...+.|.|.++..+|+|.|+|.|
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK-EIKVTSSRRFIASFNVVNTTKRDAGKYRCMI   79 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEE-EEEEEETTEEEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCC-ceeEEEeecCceEEEECCCCHHHCeEEEEEE
Confidence            57786 5888999999999999999998887655433   22222210 000011  12357999999999999999999


Q ss_pred             EeCCceEEEE-EEEEE
Q psy11701        200 TNSLGYVYKD-VYVNV  214 (745)
Q Consensus       200 ~~~~g~~~~~-~~l~v  214 (745)
                      .|..|...+. +.|.|
T Consensus        80 ~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          80 RTEGGVGISNYAELVV   95 (96)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEE
Confidence            9999987655 67766

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.9e-11  Score=95.85  Aligned_cols=91  Identities=20%  Similarity=0.252  Sum_probs=65.4

Q ss_pred             CCCCCCceeEE----EcCCceEEEEeeCCCC----CCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCC
Q psy11701        503 VPGTVQSLEAI----PLGSSAFYLKWVKPEQ----PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP  574 (745)
Q Consensus       503 ~P~~p~~~~~~----~~~~~~i~l~W~~p~~----~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p  574 (745)
                      .|.+|.++.+.    ..+.++|.|+|++|..    .++.+..|.++|+..+...+....       ......++|.+|.|
T Consensus         2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~-------~~~~~~~~i~~L~p   74 (104)
T d3d48r2           2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHF-------AGQQTEFKILSLHP   74 (104)
T ss_dssp             CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEE-------EETCSEEEECC--C
T ss_pred             CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeec-------cccccEEEECCCCC
Confidence            47888888875    4467789999999864    234677899998877655443222       34567899999999


Q ss_pred             CccEEEEEEEEecCCC-CCCcceeeec
Q psy11701        575 STKYRIHLAGYTKAGD-GAESKYLFYV  600 (745)
Q Consensus       575 ~t~Y~~~V~a~n~~G~-g~~S~~~~~~  600 (745)
                      ++.|.|+|+|.|..|. |++|+.+.+.
T Consensus        75 ~t~Y~~rVrA~n~~G~ws~wS~~~~v~  101 (104)
T d3d48r2          75 GQKYLVQVRCKPDHGYWSAWSPATFIQ  101 (104)
T ss_dssp             CCEEEEEEEEEESSSCCCCCCCCEEEE
T ss_pred             CCEEEEEEEEEeCCCCCCCCcCCEEEE
Confidence            9999999999999997 8888776543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.4e-11  Score=94.01  Aligned_cols=77  Identities=17%  Similarity=0.256  Sum_probs=61.6

Q ss_pred             eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy11701        134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVYKDVYV  212 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~~~~~l  212 (745)
                      ...+.+|+++.|.|.+.+ |.+.+.|+++|+.+..... ......++.|.|.+++.+|+|.|+|.|.|..|.......+
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~-~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l   82 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESP-KYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV   82 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSS-SBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeee-eeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence            356899999999999998 6789999999998875432 2233456789999999999999999999988765544333

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.5e-11  Score=93.58  Aligned_cols=81  Identities=20%  Similarity=0.333  Sum_probs=63.4

Q ss_pred             CCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCe
Q psy11701        612 GSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSI  691 (745)
Q Consensus       612 ~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~  691 (745)
                      ...|+++.|+|++|..    +.|.+|+|+|++.++...+                                         
T Consensus        12 ~~~~~s~~vsW~~P~~----~~i~~Y~i~y~~~~~~~~~-----------------------------------------   46 (93)
T d1owwa_          12 PSQPNSHPIQWNAPQP----SHISKYILRWRPKNSVGRW-----------------------------------------   46 (93)
T ss_dssp             SSCTTCEEEEEECCSS----SCEEEEEEEEEETTCSSCC-----------------------------------------
T ss_pred             cCCCCEEEEEeecccc----cceeEEEEEEeecccccee-----------------------------------------
Confidence            4567899999998752    3689999999976433211                                         


Q ss_pred             EEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCC
Q psy11701        692 RELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP  739 (745)
Q Consensus       692 ~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~  739 (745)
                      . ...++++...+.|.+|+|++.|.|+|.|.|..|.|+.+. ..|+|-
T Consensus        47 ~-~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~~~G~s~~~~-~~~tT~   92 (93)
T d1owwa_          47 K-EATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTR-FDFTTT   92 (93)
T ss_dssp             E-EEEECSSCCEEEECSCCSSEEEEEEEEEEESSSCEEEEE-EEEEEC
T ss_pred             e-eeccCCCccEEEECCcccCcEEEEEEEEEeCCCccCcEE-EEEEec
Confidence            1 122367889999999999999999999999999999886 778773

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.7e-12  Score=102.07  Aligned_cols=79  Identities=25%  Similarity=0.393  Sum_probs=62.5

Q ss_pred             CeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC------------CCCeEeccCCcEEEEccCCCCCCEE
Q psy11701         34 KQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP------------SDRISQGNYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        34 ~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~------------~~~~~~~~~~~~L~i~~~~~~d~G~  101 (745)
                      ..+...++++.+.+|++++|.|.+.|.|.|.+.|+|++..+..            .++...  .+++|.|.+++.+|+|.
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~   82 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF--LPTGITFKSVTREDTGT   82 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE--ETTEEECSCCCTTSCSE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeee--cCceEEEecccccceee
Confidence            4445566778899999999999999999999999997654331            111221  23579999999999999


Q ss_pred             EEEEEEeCCeeeE
Q psy11701        102 YTCEVSNGVGEAK  114 (745)
Q Consensus       102 Y~C~~~~~~g~~~  114 (745)
                      |+|.|.|..|...
T Consensus        83 Y~C~a~n~~G~~~   95 (105)
T d1nbqa1          83 YTCMVSEEGGNSY   95 (105)
T ss_dssp             EEEEEEETTSSCE
T ss_pred             EEEEEEECCCCEE
Confidence            9999999988876

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.9e-11  Score=92.50  Aligned_cols=86  Identities=12%  Similarity=0.091  Sum_probs=67.7

Q ss_pred             CCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEE
Q psy11701        503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHL  582 (745)
Q Consensus       503 ~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V  582 (745)
                      .|.+|.+|++...+.++|.|+|++|..  +.+..|.|+|+..+...+....       ......+++.+|.|++.|+|+|
T Consensus         2 ~P~~P~nl~v~~~~~~~v~l~W~~p~~--~~~~~y~v~y~~~~~~~~~~~~-------~~~~~~~~~~~L~p~t~Y~frV   72 (95)
T d2b5ic1           2 IPWAPENLTLHKLSESQLELNWNNRFL--NHCLEHLVQYRTDWDHSWTEQS-------VDYRHKFSLPSVDGQKRYTFRV   72 (95)
T ss_dssp             ECCCCEEEEEEEEETTEEEEEEECSSC--STTCEEEEEEEETTCSSCEEEE-------ECSSCEEEECSCCTTSCEEEEE
T ss_pred             CCcCCCCCEEEEEeCCEEEEEECCCCC--ceeEEEEEEEEcCCCceeeEee-------ecccceeEcCCCCCCCEEEEEE
Confidence            488999999999999999999998854  4678999999987665443222       3456799999999999999999


Q ss_pred             EEEecCCC---CCCccee
Q psy11701        583 AGYTKAGD---GAESKYL  597 (745)
Q Consensus       583 ~a~n~~G~---g~~S~~~  597 (745)
                      +|.+..+.   |.+|+++
T Consensus        73 Ra~~~~~~~~~g~WSeWS   90 (95)
T d2b5ic1          73 RSRFNPLCGSAQHWSEWS   90 (95)
T ss_dssp             EEECCSSSCCCCCCCCCC
T ss_pred             EEeeCCCCCCCCCccCCC
Confidence            99877653   4445443

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.9e-11  Score=94.81  Aligned_cols=97  Identities=15%  Similarity=0.063  Sum_probs=73.2

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEE-ccCceeEEEecccccCcceeEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIV-NKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .|.+|....+ . ...+++.|.|.++ ..+.+.+|.+|.|+|+.............+ .......++|.+|.+++.|.|+
T Consensus         2 vP~~P~~~~~-~-~~~~sv~l~W~~P-~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~fr   78 (101)
T d2haza1           2 TPSSPSIDQV-E-PYSSTAQVQFDEP-EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   78 (101)
T ss_dssp             CCCCCEEEEE-E-ECSSCEEEEEECC-SCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEE
T ss_pred             cCcCCccCEE-E-eeCCEEEEEEeCC-CcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEE
Confidence            3678855544 4 5778999999984 444556799999999876654333222222 1234567999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCC
Q psy11701        480 VLAFNGAYNGPPSEIISFVTP  500 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~  500 (745)
                      |+|.|..|.|++|....++|.
T Consensus        79 V~A~N~~G~g~~S~~~~~~T~   99 (101)
T d2haza1          79 LAALNGKGLGEISAASEFKTQ   99 (101)
T ss_dssp             EEEEETTEECCCCCCEEEECC
T ss_pred             EEEEeCCcCcCCCCceeEEeC
Confidence            999999999999999988875

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.3e-11  Score=94.01  Aligned_cols=89  Identities=20%  Similarity=0.344  Sum_probs=65.5

Q ss_pred             CCCCCceeEEEcC------CceEEEEeeCCCCC----CCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCC
Q psy11701        504 PGTVQSLEAIPLG------SSAFYLKWVKPEQP----NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE  573 (745)
Q Consensus       504 P~~p~~~~~~~~~------~~~i~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  573 (745)
                      |.||.+|.+....      ..+|.|+|++|...    ++.+..|.|+|+..+...|....       ....+.+.|.+|.
T Consensus         1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~-------~~~~~~~~i~~L~   73 (106)
T d1axib2           1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMD-------PILTTSVPVYSLK   73 (106)
T ss_dssp             CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECC-------CBSSSEEEEEEEE
T ss_pred             CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeee-------ecccceEEECCCC
Confidence            6788888875432      34799999998642    23678999999988766543322       3456799999999


Q ss_pred             CCccEEEEEEEEecCC--CCCCcceeee
Q psy11701        574 PSTKYRIHLAGYTKAG--DGAESKYLFY  599 (745)
Q Consensus       574 p~t~Y~~~V~a~n~~G--~g~~S~~~~~  599 (745)
                      +++.|.|+|+|.+..|  .|.+|+.+.+
T Consensus        74 ~~t~Y~frVRa~~~~~g~ws~wS~~v~v  101 (106)
T d1axib2          74 VDKEYEVRVRSKQRNSGNYGEFSEVLYV  101 (106)
T ss_dssp             TTSCEEEEEEEEETTSSCCCCCCCCEEE
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCCCEEE
Confidence            9999999999998654  2666655443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=1.2e-11  Score=97.50  Aligned_cols=77  Identities=23%  Similarity=0.434  Sum_probs=59.9

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC------------CCCeEeccCCcEEEEccCCCCCCEEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP------------SDRISQGNYGKSLIIKHVEFSDQGSYT  103 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (745)
                      +...++...+.+|++++|.|.+.|.|.|.+.|+|++..+..            ..+...  .+++|+|.+++.+|+|.|+
T Consensus         4 V~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           4 VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF--SSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             EECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE--ETTEEEESCCCGGGCEEEE
T ss_pred             EEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe--cCCEEEEeECCccCCEEEE
Confidence            34566678899999999999999999999999985432211            112221  2357999999999999999


Q ss_pred             EEEEeCCeeeE
Q psy11701        104 CEVSNGVGEAK  114 (745)
Q Consensus       104 C~~~~~~g~~~  114 (745)
                      |.|.|..|...
T Consensus        82 C~a~n~~g~~~   92 (102)
T d1f97a1          82 CMVSEEGGQNY   92 (102)
T ss_dssp             EEEEETTSSSE
T ss_pred             EEEEECCCCEE
Confidence            99999988766

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.3e-11  Score=94.68  Aligned_cols=85  Identities=16%  Similarity=0.154  Sum_probs=67.8

Q ss_pred             eccceeEecCCcEEEEEEEe-ecCCCeeEEEECCEecCC--CCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeEE
Q psy11701         39 TRKKEVALRNKKVELFCIFG-GTPLPQTIWSKDGVPINP--SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAKS  115 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~-g~p~~~v~W~~~~~~i~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~  115 (745)
                      .|...++.+|+.+.|.|.+. +.|.++|+|+|+|..+..  .....+...+.+|.|.+++.+|+|.|+|.|.|..|... 
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~-   86 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR-   86 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEE-
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEE-
Confidence            45566788999999999884 678899999998866542  22233334566899999999999999999999998877 


Q ss_pred             EEEEEEEEe
Q psy11701        116 YSIDLSVLA  124 (745)
Q Consensus       116 ~~~~l~V~~  124 (745)
                      .++.|.|..
T Consensus        87 ~~~~L~V~~   95 (101)
T d1iray1          87 IKISAKFVE   95 (101)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEe
Confidence            668888864

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.7e-11  Score=95.32  Aligned_cols=91  Identities=20%  Similarity=0.328  Sum_probs=70.4

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccc---cccCCCcceeeecCCCCCccE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP---YISDPTTTSAKLAGLEPSTKY  578 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~L~p~t~Y  578 (745)
                      ++|.+|.+|++..++.+++.|+|++|.   +.+.+|.|+|+......+........   ....+...++.|.+|+|++.|
T Consensus         2 g~Pp~~~~l~v~~~t~~sv~v~W~pp~---~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y   78 (101)
T d2cuia1           2 GSRPRLSQLSVTDVTTSSLRLNWEAPP---GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLY   78 (101)
T ss_dssp             CCCCCCCCCEEESCCSSCEEEECCCCT---TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCEE
T ss_pred             CCccCCCCcEEEEECCCEEEEEEEecc---ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCEE
Confidence            567788999999999999999999764   57899999998765443222211000   011456789999999999999


Q ss_pred             EEEEEEEecCCCCCCcc
Q psy11701        579 RIHLAGYTKAGDGAESK  595 (745)
Q Consensus       579 ~~~V~a~n~~G~g~~S~  595 (745)
                      .|+|+|+|..|.|.++.
T Consensus        79 ~~~V~a~~~~g~g~~~~   95 (101)
T d2cuia1          79 SLTLYGLRGPHKADSIQ   95 (101)
T ss_dssp             EEEEEEECSSSEEEEEE
T ss_pred             EEEEEEEeCCcEeCCeE
Confidence            99999999999998854

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.7e-12  Score=102.24  Aligned_cols=102  Identities=19%  Similarity=0.168  Sum_probs=75.0

Q ss_pred             EEEEEeccCCCCCCceeEE-eecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEeccccc
Q psy11701        394 ATLTVQVPLEAPSNFTLIQ-VIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVP  472 (745)
Q Consensus       394 ~~l~v~~pp~~P~~~~~~~-~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~  472 (745)
                      +.|.|+..|.+|.++.+.. ..+.+++.|+|.++  .+.+++|.+|.|+|+..+.. +......+ ......++|.+|.+
T Consensus         3 ~~l~v~~~P~~P~~p~~~~~~~~~~sv~l~W~~P--~~~~~~I~~Y~v~~~~~~~~-~~~~~~~~-~~~~~~~~i~~L~p   78 (108)
T d1wf5a1           3 AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP--FDGNSPLIRYILEMSENNAP-WTVLLASV-DPKATSVTVKGLVP   78 (108)
T ss_dssp             CCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCC--CCCSSCEEEEEEEEECTTCC-CEEEESSC-CTTCCEEEEESCCT
T ss_pred             cccEEecCCCCCCCCEEEEEeccCCEEEEEEECC--CCCCCccEEEEEEEEeccCC-ceEEeeee-cCCccEEEECCCCC
Confidence            3456677788888765432 15678999999985  35678899999998765442 11111122 45667899999999


Q ss_pred             CcceeEEEEEecCCCCCCCCcceEEeC
Q psy11701        473 ASKNFARVLAFNGAYNGPPSEIISFVT  499 (745)
Q Consensus       473 ~~~Y~~~V~a~n~~G~g~~S~~~~~~t  499 (745)
                      ++.|.|+|+|.|..|.|++|......|
T Consensus        79 ~t~Y~frV~A~N~~G~s~~S~~~~~~t  105 (108)
T d1wf5a1          79 ARSYQFRLCAVNDVGKGQFSKDTERVS  105 (108)
T ss_dssp             TCEEEEEEEEEESSCEEEECCCCSCEE
T ss_pred             CCEEEEEEEEEcCCcCCCCcCCcCCEE
Confidence            999999999999999999887665544

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.6e-11  Score=96.75  Aligned_cols=92  Identities=20%  Similarity=0.244  Sum_probs=74.5

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV  480 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V  480 (745)
                      .|.+|.++++.. .+.+++.|+|+++.    ++.+.+|.|+|+.........  ...  ....+++|.+|+|++.|.|+|
T Consensus        10 vP~~P~~~~~~~-~~~~si~l~W~~p~----~~~i~~Y~i~y~~~~~~~~~~--~~~--~~~~~~~i~~L~p~t~Y~~~V   80 (102)
T d1x5za1          10 VPGQPLNFKAEP-ESETSILLSWTPPR----SDTIANYELVYKDGEHGEEQR--ITI--EPGTSYRLQGLKPNSLYYFRL   80 (102)
T ss_dssp             CCCCCEEEEEEC-SSSSEEEEEEECCS----CCCCCEEEECBEESSSCCCBC--CEE--CSSSEEEEECCCTTCEEEECE
T ss_pred             CCcCCCCeEEEE-ccCCEEEEEEECCC----CCCccceEEEEEeCCCCceEE--EEc--CCcCEEEECCCCCCCEEEEEE
Confidence            467888999887 88999999999852    457899999988765543222  222  345689999999999999999


Q ss_pred             EEecCCCCCCCCcceEEeCCC
Q psy11701        481 LAFNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       481 ~a~n~~G~g~~S~~~~~~t~~  501 (745)
                      .|+|..|.|++|..+.++|.+
T Consensus        81 ~A~n~~G~g~~S~~v~~~T~e  101 (102)
T d1x5za1          81 AARSPQGLGASTAEISARTMQ  101 (102)
T ss_dssp             EEECSSCEEEECCCEEEECCC
T ss_pred             EEEcCCCEeCCCCCEEEEcCC
Confidence            999999999999999999865

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.9e-11  Score=95.55  Aligned_cols=85  Identities=15%  Similarity=0.321  Sum_probs=65.6

Q ss_pred             CceeEeeCCCeEEE---EEEEeecCCCeEEEEeCCEeccCCCCCCceee--------cCceEEEccCCCCCCEEEEEEEE
Q psy11701        132 PEFINAAEEETVTF---ECKASGLPEPEIHWVHNGKPISQAPPNPRRKV--------GPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       132 ~~~~~v~~G~~~~l---~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      |....+..|....+   .|.+.|.|.+.++|++||+.+...........        ....|.|.++...|+|.|+|.|.
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            45556666666555   45889999999999999999875432211111        12469999999999999999999


Q ss_pred             eCCceEEEEEEEEEee
Q psy11701        201 NSLGYVYKDVYVNVLA  216 (745)
Q Consensus       201 ~~~g~~~~~~~l~v~~  216 (745)
                      |..|.....+.|.|..
T Consensus        84 N~~G~~~~~i~v~v~~   99 (107)
T d1he7a_          84 NPFGQASASIMAAFMD   99 (107)
T ss_dssp             ETTEEEEEEEEECCCS
T ss_pred             eCCCEEEEEEEEEEEc
Confidence            9999999999998875

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4e-12  Score=102.77  Aligned_cols=103  Identities=20%  Similarity=0.272  Sum_probs=73.7

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCc----ceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcc
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSL----RGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASK  475 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~----~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~  475 (745)
                      .||.+|.++++....+.+++.|+|+++.....    ++.+.+|.+.+    ++. ..........+...+.|.+|++++.
T Consensus         9 ~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~----~~~-~~~~~~~~~~~~~~~~i~~L~~~t~   83 (117)
T d2cspa1           9 GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA----KGQ-RVAEVIFPTADSTAVELVRLRSLEA   83 (117)
T ss_dssp             CCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEES----SSS-EEEEECCTTCSEEEEESHHHHHHTC
T ss_pred             CCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEe----ecc-cceeeeeeccceeeeeccCCCCCcE
Confidence            56788888887532566789999998654332    34456666532    222 1222222245667889999999999


Q ss_pred             eeEEEEEecCCCCCCCCcceEEeCCCCCCCCC
Q psy11701        476 NFARVLAFNGAYNGPPSEIISFVTPEGVPGTV  507 (745)
Q Consensus       476 Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p  507 (745)
                      |.|+|+|+|..|.|..|..+.+.|....|+.|
T Consensus        84 Y~v~V~A~n~~G~s~~S~~v~i~t~~~vP~~P  115 (117)
T d2cspa1          84 KGVTVRTLSAQGESVDSAVAAVPPELLVPPTP  115 (117)
T ss_dssp             SCBEEEEEESSCCCCCCSCBCCCHHHHSCCCC
T ss_pred             EEEEEEEEcCCCcCCCCCCEEeeCCCCCCccc
Confidence            99999999999999999998888877777655

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.2e-12  Score=102.62  Aligned_cols=95  Identities=17%  Similarity=0.329  Sum_probs=66.0

Q ss_pred             EeCCC-CCCCCCCceeEEE-cCCceEEEEeeCCCC--C----CCceeeEEEEEEEcCCcccCCcccccccccCCCcceee
Q psy11701        497 FVTPE-GVPGTVQSLEAIP-LGSSAFYLKWVKPEQ--P----NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAK  568 (745)
Q Consensus       497 ~~t~~-~~P~~p~~~~~~~-~~~~~i~l~W~~p~~--~----~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (745)
                      ++|.+ .+|++|.++.+.. .+.++|.|+|++|..  .    ++.|.+|.+++.   +.....+.     ....+...++
T Consensus         3 ~~T~~~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~---~~~~~~~~-----~~~~~~~~~~   74 (117)
T d2cspa1           3 FSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK---GQRVAEVI-----FPTADSTAVE   74 (117)
T ss_dssp             CCCCCCCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESS---SSEEEEEC-----CTTCSEEEEE
T ss_pred             EEeCCCCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEee---cccceeee-----eeccceeeee
Confidence            55654 5667899998754 567899999999853  2    234555554432   11111111     1145567899


Q ss_pred             ecCCCCCccEEEEEEEEecCCCCCCcceeee
Q psy11701        569 LAGLEPSTKYRIHLAGYTKAGDGAESKYLFY  599 (745)
Q Consensus       569 l~~L~p~t~Y~~~V~a~n~~G~g~~S~~~~~  599 (745)
                      |.+|++++.|.|+|+|+|..|.|++|..+..
T Consensus        75 i~~L~~~t~Y~v~V~A~n~~G~s~~S~~v~i  105 (117)
T d2cspa1          75 LVRLRSLEAKGVTVRTLSAQGESVDSAVAAV  105 (117)
T ss_dssp             SHHHHHHTCSCBEEEEEESSCCCCCCSCBCC
T ss_pred             ccCCCCCcEEEEEEEEEcCCCcCCCCCCEEe
Confidence            9999999999999999999999999876543

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5e-11  Score=90.83  Aligned_cols=83  Identities=25%  Similarity=0.349  Sum_probs=64.1

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCc-eee--cCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPR-RKV--GPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~-~~~--~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      |+..+.+..+.+|+++.|.|.+. .|.+.+.|+|+|..+........ ...  ....|.|.++..+|+|.|+|.|.|   
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---   78 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG---   78 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT---
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec---
Confidence            34557888999999999999995 58889999999999876543322 222  235899999999999999999955   


Q ss_pred             eEEEEEEEEEe
Q psy11701        205 YVYKDVYVNVL  215 (745)
Q Consensus       205 ~~~~~~~l~v~  215 (745)
                       ...++.|.|.
T Consensus        79 -~~~~a~l~V~   88 (90)
T d1x44a1          79 -GQSSAKLSVD   88 (90)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -ceEEEEEEEE
Confidence             4455666664

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.18  E-value=1.9e-11  Score=91.88  Aligned_cols=78  Identities=28%  Similarity=0.554  Sum_probs=62.8

Q ss_pred             CeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        126 PYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       126 p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      |.+...|....+.+|++++|.|.+.+.|.+ .+.|++||..+..         .+..|.|.+++.+|+|.|+|.+.|..+
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~---------~~~~l~i~~v~~~dsG~Y~C~a~ns~~   75 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT---------HTQPSYRFKANNNDSGEYTCQTGQTSL   75 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT---------CCSSEEEEECCGGGCEEEEEECTTSBC
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccc---------cccceEEeeccccCCcEEEEECCCCcc
Confidence            557778888899999999999999887765 7899999998863         245799999999999999999987543


Q ss_pred             eEEEEEEEEE
Q psy11701        205 YVYKDVYVNV  214 (745)
Q Consensus       205 ~~~~~~~l~v  214 (745)
                      .  ..+.|.|
T Consensus        76 S--~~v~l~V   83 (85)
T d2fcba1          76 S--DPVHLTV   83 (85)
T ss_dssp             C--CCEEEEE
T ss_pred             c--ccEEEEE
Confidence            2  2344544

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.8e-11  Score=93.30  Aligned_cols=96  Identities=14%  Similarity=0.112  Sum_probs=71.5

Q ss_pred             CCCCCCceeEEEcCCceEEEEeeCCCCCC--CceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        503 VPGTVQSLEAIPLGSSAFYLKWVKPEQPN--GVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       503 ~P~~p~~~~~~~~~~~~i~l~W~~p~~~~--g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      .+.||.+|++..++.+++.|+|.+|...+  +.+..|.++|+...... .....   .........+.|.+|+|++.|.|
T Consensus         2 rl~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~-~~~~~---~~~~~~~~~~~i~~L~p~t~Y~~   77 (104)
T d2b5ib2           2 RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTW-EEAPL---LTLKQKQEWICLETLTPDTQYEF   77 (104)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCS-TTSCC---EEECSCCCEEEECSCCTTCEEEE
T ss_pred             ccCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccc-eeeeE---EecCCCcEEEEECCCCCCCEEEE
Confidence            46789999999999999999999886533  45778999998765432 21111   01245678899999999999999


Q ss_pred             EEEEEecCCC-CCCcceeeeccc
Q psy11701        581 HLAGYTKAGD-GAESKYLFYVPF  602 (745)
Q Consensus       581 ~V~a~n~~G~-g~~S~~~~~~~~  602 (745)
                      +|+|.|..|. |.+|+++..+..
T Consensus        78 rVra~~~~g~~g~wS~wS~~v~~  100 (104)
T d2b5ib2          78 QVRVKPLQGEFTTWSPWSQPLAF  100 (104)
T ss_dssp             EEEEEESCCSSCCCCCCCCCEEE
T ss_pred             EEEEEECCCCCCCCCCCcCCEEE
Confidence            9999999985 666666544333

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.9e-11  Score=93.96  Aligned_cols=80  Identities=24%  Similarity=0.324  Sum_probs=61.6

Q ss_pred             eeEecCCcEEEEE------EEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeCCeeeE--
Q psy11701         43 EVALRNKKVELFC------IFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNGVGEAK--  114 (745)
Q Consensus        43 ~~v~~G~~~~l~C------~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~--  114 (745)
                      +.+..|....|.|      .+.|.|.|.|.|+|||++|....+.... .+..|.|.+++.+|+|.|+|.|.|..|...  
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~   87 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG-VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYP   87 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEE-ETTEEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEe-cCCEEEEcccccccCcEEEEEEEECcCCEEEE
Confidence            5688999999999      5678899999999999999865443322 245799999999999999999998654322  


Q ss_pred             -EEEEEEEEE
Q psy11701        115 -SYSIDLSVL  123 (745)
Q Consensus       115 -~~~~~l~V~  123 (745)
                       +..+.|.|.
T Consensus        88 vt~~i~~~v~   97 (103)
T d1iray2          88 ITRVIEFITL   97 (103)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence             244444443

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=1.4e-11  Score=100.46  Aligned_cols=99  Identities=16%  Similarity=0.130  Sum_probs=74.1

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCC--CCceeEEEEccCceeEEEecccccCccee
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDG--EGSIRELIVNKGESTTTEVDKFVPASKNF  477 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~  477 (745)
                      .||.+|.++.+.. ++.++|.|.|+++ ..+.+..+.+|.|+|+.....  ...+..+ . ......++|.+|++++.|.
T Consensus        14 ~pp~~P~~p~v~~-vt~~sv~l~W~~P-~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~-~-~~~~~~~~v~~L~p~t~Y~   89 (120)
T d1wfua_          14 VPLSKPHPPVVGK-VTHHSIELYWDLE-QKEKRQGPQEQWLRFSIEEEDPKMHSYGVI-Y-TGYATRHVVEGLEPRTLYK   89 (120)
T ss_dssp             CCCCCCCCCBCCC-EETTEEEEECTTT-SCSCCCSCGGGCCEEEEEEECTTTCCEEEE-E-EESCSEEEEESCCTTCEEE
T ss_pred             cCCCcCCCCEEeE-ecCCEEEEEEECC-cccCcccccceeeeeeeecccccccceeee-c-cccccEEeCCCCCCCcEee
Confidence            4677888888777 7889999999984 333344577888777643222  2222222 2 3456789999999999999


Q ss_pred             EEEEEecCCCCCCCCcceEEeCCCC
Q psy11701        478 ARVLAFNGAYNGPPSEIISFVTPEG  502 (745)
Q Consensus       478 ~~V~a~n~~G~g~~S~~~~~~t~~~  502 (745)
                      |+|+|+|..|.|++|..+.++|...
T Consensus        90 frV~A~n~~G~s~~S~~~~~~T~~~  114 (120)
T d1wfua_          90 FRLKVTSPSGEYEYSPVVSVATTRE  114 (120)
T ss_dssp             EEEEEECSSSCEEECCCEEEECCCC
T ss_pred             EEEEEEeCCcEeCCCCCEEEEeCCC
Confidence            9999999999999999999888543

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.16  E-value=2.6e-11  Score=90.80  Aligned_cols=70  Identities=27%  Similarity=0.536  Sum_probs=59.4

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      +|.+...|....+.+|++++|+|.+.+.|.+ .+.|+++|..+..         ....|.|.+++.+|+|.|+|.+.+..
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS---------QASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES---------SCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee---------cceeeEecCCcccCCEEEEEEccCCC
Confidence            5677888988899999999999999998877 5778899887752         24589999999999999999997654

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.4e-11  Score=97.67  Aligned_cols=110  Identities=19%  Similarity=0.174  Sum_probs=85.9

Q ss_pred             EEeccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcce
Q psy11701        397 TVQVPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKN  476 (745)
Q Consensus       397 ~v~~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y  476 (745)
                      .+...|.+|.++.+.. .+.++|.|.|+++  ...++.+..|.++|+........+..... ......+.+.+|.+++.|
T Consensus        12 ~v~d~P~~P~~~~v~~-~~~~sv~l~W~~p--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y   87 (127)
T d1ueya_          12 PVYDVPNPPFDLELTD-QLDKSVQLSWTPG--DDNNSPITKFIIEYEDAMHKPGLWHHQTE-VSGTQTTAQLNLSPYVNY   87 (127)
T ss_dssp             CCCCSCCCCEEEEEEC-CSSSCEEEEEECC--CCCSSCEEEEEEEEEBTTTCTTCEEEEEE-EESSCCEEEECCCTTCEE
T ss_pred             cccccCcCCCCcEEEE-ecCCeEEEEEeCC--cccccceEeeeeeeccccccceeEEEEee-cCCceEEEECCCccCCEE
Confidence            3446688999999988 8999999999974  45667899999988877665555544444 556778999999999999


Q ss_pred             eEEEEEecCCCCCCCCcc-eEEeCCCCCCC-CCCce
Q psy11701        477 FARVLAFNGAYNGPPSEI-ISFVTPEGVPG-TVQSL  510 (745)
Q Consensus       477 ~~~V~a~n~~G~g~~S~~-~~~~t~~~~P~-~p~~~  510 (745)
                      .|+|+|+|..|.|.+|.. ..++|.+..|. +|.++
T Consensus        88 ~frV~A~n~~G~s~~S~~s~~~~t~~~~P~~~P~~~  123 (127)
T d1ueya_          88 SFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSG  123 (127)
T ss_dssp             CCEEEEEESSCBCCCCSCCCCEECCCSSCSSCSSCC
T ss_pred             EEEEEEEcCCcCcCCcCCcccEEcCCCCCCCCCCCC
Confidence            999999999999998865 44677777664 45443

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5.3e-11  Score=93.42  Aligned_cols=97  Identities=15%  Similarity=0.077  Sum_probs=76.7

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCc--ceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSL--RGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA  478 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~--~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~  478 (745)
                      |+.||.++.+.. .+.+++.|+|+++.....  .+.+.+|.|.|+..+.....+  ..+ ......++|.+|.|++.|.|
T Consensus         1 P~~pP~~v~~~~-~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~--~~~-~~~~~~~~i~~L~p~t~Y~~   76 (100)
T d1x5ja1           1 PMMPPVGVQASI-LSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKY--KNA-NATTLSYLVTGLKPNTLYEF   76 (100)
T ss_dssp             CCCCCEEEEEEE-EETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCC--EEC-CBCSSEEEEESCCTTCEECC
T ss_pred             CCCCCcCeEEEE-ecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCccee--Eec-CCCccEEEECCCCCCCEEEE
Confidence            567899999988 999999999998643332  345678888877665543332  233 44667899999999999999


Q ss_pred             EEEEecCCCCCCCCcceEEeCCC
Q psy11701        479 RVLAFNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       479 ~V~a~n~~G~g~~S~~~~~~t~~  501 (745)
                      +|+|+|..|.|++|..+.++|.+
T Consensus        77 ~V~a~n~~g~s~~S~~~~~~T~e   99 (100)
T d1x5ja1          77 SVMVTKGRRSSTWSMTAHGTTFE   99 (100)
T ss_dssp             EEEEECSSCBCCCCCCCCEECCC
T ss_pred             EEEEEeCCcCcCCCCeEEEEecc
Confidence            99999999999999999998865

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.5e-10  Score=91.67  Aligned_cols=98  Identities=14%  Similarity=0.184  Sum_probs=79.0

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV  480 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V  480 (745)
                      .+.||.++++.. .+.+++.|+|+++........+..|.++|+.............. ......+.|.+|+|++.|.|+|
T Consensus         2 rl~pP~~l~v~~-~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~rV   79 (104)
T d2b5ib2           2 RLMAPISLQVVH-VETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTL-KQKQEWICLETLTPDTQYEFQV   79 (104)
T ss_dssp             CCCCCEEEEEEE-ECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEE-CSCCCEEEECSCCTTCEEEEEE
T ss_pred             ccCCCCCcEEEE-EeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEec-CCCcEEEEECCCCCCCEEEEEE
Confidence            468999999998 89999999999976666666778899999887765444444444 5678889999999999999999


Q ss_pred             EEecCCCC----CCCCcceEEeCC
Q psy11701        481 LAFNGAYN----GPPSEIISFVTP  500 (745)
Q Consensus       481 ~a~n~~G~----g~~S~~~~~~t~  500 (745)
                      +|.|..|.    |++|.++.++|.
T Consensus        80 ra~~~~g~~g~wS~wS~~v~~~T~  103 (104)
T d2b5ib2          80 RVKPLQGEFTTWSPWSQPLAFRTK  103 (104)
T ss_dssp             EEEESCCSSCCCCCCCCCEEEECC
T ss_pred             EEEECCCCCCCCCCCcCCEEEECC
Confidence            99999885    456677888774

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.6e-11  Score=90.30  Aligned_cols=86  Identities=14%  Similarity=0.215  Sum_probs=63.3

Q ss_pred             cCeEEecC-ceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeec--CceEEEccCCCCCCEEEEEEEEe
Q psy11701        125 APYFTVEP-EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVG--PNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       125 ~p~~~~~~-~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      +|.|.... ....+.+|+++.|.|.+.+ |.+.++|+|||..+..+.........  ...|.|.++..+|+|.|+|.|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~~-p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECSS-SSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEECC-CCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            34454443 4457899999999999865 88899999999999754433333332  35799999999999999999954


Q ss_pred             CCceEEEEEEEEEe
Q psy11701        202 SLGYVYKDVYVNVL  215 (745)
Q Consensus       202 ~~g~~~~~~~l~v~  215 (745)
                          ...++.|.|.
T Consensus        84 ----~~~s~~l~V~   93 (94)
T d1pd6a_          84 ----EKCSTELFVK   93 (94)
T ss_dssp             ----EEECCEEEEE
T ss_pred             ----EEEEEEEEEE
Confidence                3445566654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.1e-10  Score=92.71  Aligned_cols=88  Identities=16%  Similarity=0.228  Sum_probs=67.6

Q ss_pred             CeEEecC-ceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCcee-------------ecCceEEEccCCCCC
Q psy11701        126 PYFTVEP-EFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRK-------------VGPNRITIENLRKSD  191 (745)
Q Consensus       126 p~~~~~~-~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~-------------~~~~~L~i~~v~~~d  191 (745)
                      |.+...+ ....+.+|+++.|.|.+.+.|.+.+.|+++|..+..........             ...+.|.|.+++..|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            5555443 33557789999999999999999999999999887543322111             012479999999999


Q ss_pred             CE-EEEEEEEeCCceEEEEEEEE
Q psy11701        192 TG-NYGCNATNSLGYVYKDVYVN  213 (745)
Q Consensus       192 ~G-~Y~C~~~~~~g~~~~~~~l~  213 (745)
                      .| .|+|.|.|..|.....+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999887776654

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.2e-11  Score=101.85  Aligned_cols=114  Identities=12%  Similarity=0.104  Sum_probs=73.9

Q ss_pred             CCCCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeee
Q psy11701        606 DNVEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEK  685 (745)
Q Consensus       606 ~~~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~  685 (745)
                      .++.+...++++|.|+|++|... .+|.|.+|.|+|++..................                   .|...
T Consensus         6 lnl~~~~~sstsv~lsW~pP~~~-~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~-------------------~~~~~   65 (125)
T d2dtge3           6 LKFSYIRTSFDKILLRWEPYWPP-DFRDLLGFMLFYKEAPYQNVTEFDGQDACGSN-------------------SWTVV   65 (125)
T ss_dssp             CCCSEEEECSSCEEEECCCCCSS-SCCCEEEECCCSSSCCTTTCCCCCCCCCSCCC-------------------CCCCC
T ss_pred             EEEEEEEecCCEEEEEEeCCCcc-CCCcEEEEEEEEEECCCCceEEEeeccccCCc-------------------cccee
Confidence            34556677899999999976543 46789999999987643321111100000000                   00000


Q ss_pred             cCCCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCccc-----CCCCcceEEeCC
Q psy11701        686 DGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYN-----GPPSEIISFVTP  739 (745)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~-----g~~s~~~~~~t~  739 (745)
                      .-..............+++.|.+|+|++.|.|+|+|+|.+|.     |+.|+++.|+|+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T~  124 (125)
T d2dtge3          66 DIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD  124 (125)
T ss_dssp             CSCCEEEECCCCSSSCCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC
T ss_pred             cccCcceeeeecCCccCEEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEEEcC
Confidence            001111122233567889999999999999999999999995     889999999996

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.1e-11  Score=94.20  Aligned_cols=96  Identities=19%  Similarity=0.196  Sum_probs=74.1

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .||.+|.++.+.. .+.++|.|+|+++ ....+..+.+|.++++.......  ............+++.+|.+++.|.|+
T Consensus         1 ~Pp~pP~~p~~~~-~t~~sv~lsW~~P-~~~~g~~i~~y~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~fr   76 (104)
T d1bpva_           1 SPIDPPGKPVPLN-ITRHTVTLKWAKP-EYTGGFKITSYIVEKRDLPNGRW--LKANFSNILENEFTVSGLTEDAAYEFR   76 (104)
T ss_dssp             CCCCCCCCCEEEE-EETTEEEEECCCC-SCCTTCCCSCCEEEEEETTSCCC--EECCCSCCCSSEEEECSCCSSCCEEEE
T ss_pred             CCCCCCCCCEEEE-ecCCEEEEEEEec-cccCcceEEEEEEEeecccccce--eEEEeeccceeEEEEcCCCCCCEEEEE
Confidence            4789999999888 8899999999974 34455679999999887655432  222222456778999999999999999


Q ss_pred             EEEecCCCC-CCCCcceEEeC
Q psy11701        480 VLAFNGAYN-GPPSEIISFVT  499 (745)
Q Consensus       480 V~a~n~~G~-g~~S~~~~~~t  499 (745)
                      |+|+|..|. |++|......+
T Consensus        77 V~A~n~~G~~s~~S~~s~~vt   97 (104)
T d1bpva_          77 VIAKNAAGAISPPSEPSDAIT   97 (104)
T ss_dssp             EEEECTTSCEEEEEEEEEEEC
T ss_pred             EEEEECCCCCCCCcCCCCCEE
Confidence            999999997 67776555444

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.9e-11  Score=91.11  Aligned_cols=79  Identities=25%  Similarity=0.505  Sum_probs=61.2

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCC-eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEP-EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .|.+...|....+.+|++++|.|.+.+.|.+ .+.|++++..+..         ....|.|.+++.+|+|.|+|.|.|..
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE---------TNSSLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC---------CSSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec---------ccceeEECCCChhhCCcEEEEecCCC
Confidence            3778888888899999999999999988876 5678899887763         24579999999999999999997754


Q ss_pred             ceEEEEEEEEE
Q psy11701        204 GYVYKDVYVNV  214 (745)
Q Consensus       204 g~~~~~~~l~v  214 (745)
                      +.  ..+.|.|
T Consensus        72 ~S--~~v~l~V   80 (82)
T d1f2qa1          72 ES--EPVYLEV   80 (82)
T ss_dssp             CC--CCEEEEE
T ss_pred             Cc--ccEEEEE
Confidence            43  2345555

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=8.8e-11  Score=93.28  Aligned_cols=92  Identities=10%  Similarity=0.014  Sum_probs=66.4

Q ss_pred             CCCCCCCceeE-EEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCC-ccccc-ccccCCCcceeeecCCCCCccE
Q psy11701        502 GVPGTVQSLEA-IPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGP-LLERL-PYISDPTTTSAKLAGLEPSTKY  578 (745)
Q Consensus       502 ~~P~~p~~~~~-~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~~L~p~t~Y  578 (745)
                      -+|++|.++++ ...+.++|+|+|.+|.+.+++ +.|.+.|+......+.. ..... .........++.+.+|.+++.|
T Consensus         3 ~PP~~P~~v~~i~~~~~~sv~~sW~p~~d~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~Y   81 (107)
T d1cd9b1           3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYM   81 (107)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCE
T ss_pred             CccCCCcCCEEEEecCCCEEEEEEcCCCCCCCC-cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCceE
Confidence            36889999985 566889999999999887766 56777776654332222 11100 0111346678999999999999


Q ss_pred             EEEEEEEecCCCCCCc
Q psy11701        579 RIHLAGYTKAGDGAES  594 (745)
Q Consensus       579 ~~~V~a~n~~G~g~~S  594 (745)
                      .|+|.|.|..|.|.++
T Consensus        82 ~frV~A~N~~G~s~S~   97 (107)
T d1cd9b1          82 AIWVQAENMLGSSESP   97 (107)
T ss_dssp             EEEEEEEETTEEEECC
T ss_pred             EEEEEEEeCCccccCC
Confidence            9999999999998643

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.2e-11  Score=94.44  Aligned_cols=92  Identities=13%  Similarity=0.098  Sum_probs=73.4

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      ..|.+|.++.+.. .+.+++.|.|+++  ...+|.+.+|+|+|+..+... .+....+ .....+++|.+|.+++.|.|+
T Consensus         9 ~vP~~p~~l~~~~-~~~~sv~l~W~~P--~~~ng~i~~Y~i~~~~~~~~~-~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~   83 (106)
T d1wfna1           9 DVPGPVGHLSFSE-ILDTSLKVSWQEP--GEKNGILTGYRISWEEYNRTN-TRVTHYL-PNVTLEYRVTGLTALTTYTIE   83 (106)
T ss_dssp             CSCCCCSCCEEES-CCSSEEEEECCCC--TTCCSCCCEEEEEEEESSCGG-GCCCEEE-CSSCCEEEEESCCTTCEEEEE
T ss_pred             CCCcCCCCcEEEE-ecCCEEEEEEECC--CCCCCcEEeEEEEEEECCCCc-ceEEEec-CCCeeEEEEccCCCCCEEEEE
Confidence            3467889999887 8889999999974  346788999999988765433 2223334 566789999999999999999


Q ss_pred             EEEecCCCCCCCCcceE
Q psy11701        480 VLAFNGAYNGPPSEIIS  496 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~  496 (745)
                      |+|.|..|.|++|....
T Consensus        84 V~A~n~~G~g~~s~~~~  100 (106)
T d1wfna1          84 VAAMTSKGQGQVSASTI  100 (106)
T ss_dssp             EEEECSSCEEEEEEEEE
T ss_pred             EEEECCCCCcCCcCCEE
Confidence            99999999998887543

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-11  Score=97.35  Aligned_cols=81  Identities=7%  Similarity=0.033  Sum_probs=59.3

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEee-c--CCCeeEEEECCEecCCCCCeEe--ccC--CcEEEEccCCCCCCEEEEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGG-T--PLPQTIWSKDGVPINPSDRISQ--GNY--GKSLIIKHVEFSDQGSYTC  104 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g-~--p~~~v~W~~~~~~i~~~~~~~~--~~~--~~~L~i~~~~~~d~G~Y~C  104 (745)
                      ||..+.+.++...+.+|+.++|+|.+.| .  |.++|+|+||+++|........  ...  ...|.|.....+|.|.|+|
T Consensus         1 PP~~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC   80 (106)
T d1zxqa1           1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSC   80 (106)
T ss_dssp             CCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEE
T ss_pred             CCcCCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEE
Confidence            4666777788888999999999999976 4  4458999999999864322211  111  1357777777778889999


Q ss_pred             EEEeCCee
Q psy11701        105 EVSNGVGE  112 (745)
Q Consensus       105 ~~~~~~g~  112 (745)
                      +|.|..+.
T Consensus        81 ~A~n~~~~   88 (106)
T d1zxqa1          81 LAVLDLMS   88 (106)
T ss_dssp             EEEEECGG
T ss_pred             EEEecCCC
Confidence            99987653

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=9.2e-11  Score=91.03  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=59.3

Q ss_pred             eEeeCCCeEEEEE------EEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCceEE
Q psy11701        135 INAAEEETVTFEC------KASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLGYVY  207 (745)
Q Consensus       135 ~~v~~G~~~~l~C------~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~~  207 (745)
                      +.+..|....|.|      .+.+.|.|.+.|++||+.+...  ..+....++.|.|.++..+|+|.|+|.|.|..+...
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD--NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCC--SSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCC--CcEEEecCCEEEEcccccccCcEEEEEEEECcCCEE
Confidence            4578999999999      5578899999999999999743  334556678999999999999999999998776443

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=6.9e-11  Score=92.25  Aligned_cols=90  Identities=13%  Similarity=0.221  Sum_probs=69.7

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEee-cCCC--eEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEE
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASG-LPEP--EIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      .|+.+.+.+....+.+|+.++|.|.+.| .|.+  +++|+++++.+.......  ....+.|.|..+..+|+|.|+|+|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~--~~~~s~l~i~~~~~dd~g~ytC~A~   80 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG--EPAEVTTTVLVRRDHHGAQFSCRTE   80 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT--TTEEEEEEEECCSSCSSCEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccccc--ccceEEEEEeeehhHCCCEEEEEEE
Confidence            4677778888888999999999999986 5655  688999999886432111  1123579999999999999999999


Q ss_pred             eCCceEEEEEEEEEe
Q psy11701        201 NSLGYVYKDVYVNVL  215 (745)
Q Consensus       201 ~~~g~~~~~~~l~v~  215 (745)
                      |..|....++.+.+.
T Consensus        81 n~~g~~~~~~~~~~s   95 (103)
T d1iama1          81 LDLRPQGLELFENTS   95 (103)
T ss_dssp             EECGGGTSCEEEEEC
T ss_pred             eCCCCccCeEeeeEc
Confidence            998876656565554

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.3e-10  Score=89.46  Aligned_cols=93  Identities=13%  Similarity=0.026  Sum_probs=65.5

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEe
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAF  483 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~  483 (745)
                      .|..+.+.. .+.+++.|+|+++.  ..++.+.+|.|+|+...... .+............++|.+|.+++.|.|+|+|.
T Consensus         9 ~P~~p~~~~-~~~~~v~l~W~pp~--~~~~~~~~y~i~y~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~   84 (105)
T d2d9qb2           9 MDPSPEAAP-PQAGCLQLSWEPWQ--PGLHINQKCELRHKPQRGEA-SWALVGPLPLEALQYELCGLLPATAYTLQIRCI   84 (105)
T ss_dssp             CCC--------CCSCEEEEEECCG--GGTTSCEEEEEEEEESSSCC-CCEEEEEECSCEEEEEECSCCSCCCEEEEEEEE
T ss_pred             CCCCCEeec-CCCCeEEEEEcCCC--CCCceeEEEEEEEEecCCcc-ceeeeecccCCcceeEEecccCCeEEEEEEEEE
Confidence            444566655 78899999999853  45677899999998766543 333333326678889999999999999999999


Q ss_pred             cCCCCCCCC---cceEEeCC
Q psy11701        484 NGAYNGPPS---EIISFVTP  500 (745)
Q Consensus       484 n~~G~g~~S---~~~~~~t~  500 (745)
                      |..|.|.+|   ..+.++|.
T Consensus        85 n~~g~G~~S~wS~~~~~~t~  104 (105)
T d2d9qb2          85 RWPLPGHWSDWSPSLELRTT  104 (105)
T ss_dssp             ECSSCCCCCCCCCCEEECCC
T ss_pred             eCCCCCCCcCCCCCEEEeCC
Confidence            999997554   45666553

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.8e-10  Score=88.53  Aligned_cols=86  Identities=21%  Similarity=0.369  Sum_probs=69.0

Q ss_pred             cCCCCCCceeEEeecC-ceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        401 PLEAPSNFTLIQVIDA-KKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~-~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      |+.||.++++.. ... +.+.|.|+++.    ++.+.+|+|.|+...+.........+ ......++|.+|.|++.|.|+
T Consensus         1 P~~PP~~l~v~~-~~~ts~i~v~W~~p~----~~~i~~Y~v~y~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~v~   74 (94)
T d1fnfa1           1 PLSPPTNLHLEA-NPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVV-HADQSSCTFDNLSPGLEYNVS   74 (94)
T ss_dssp             CCCCCEEEEEEE-CSSSSCEEEEEECCS----CSSCCEEEEEEEETTTCSSCCEEEEE-CTTCCEEECCCCCTTSCEEEE
T ss_pred             CCCcCcCcEEEE-ecCCCEEEEEeeCCC----CCCeeEEEEEEEEecccCceEEEEEe-CCCccEEEECCCCCCCEEEEE
Confidence            567999999987 554 45999999853    22488999999987765555566666 677889999999999999999


Q ss_pred             EEEecCCCCCCCC
Q psy11701        480 VLAFNGAYNGPPS  492 (745)
Q Consensus       480 V~a~n~~G~g~~S  492 (745)
                      |.|+|..|.|.+.
T Consensus        75 V~a~~~~g~s~p~   87 (94)
T d1fnfa1          75 VYTVKDDKESVPI   87 (94)
T ss_dssp             EEEEETTEECCCE
T ss_pred             EEEEcCCCEeCCE
Confidence            9999998887553

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.4e-10  Score=91.63  Aligned_cols=77  Identities=23%  Similarity=0.244  Sum_probs=57.3

Q ss_pred             CcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeEEE
Q psy11701        615 PNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIREL  694 (745)
Q Consensus       615 p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~~~  694 (745)
                      .++|.|+|+++..  .+|.|.+|.|+|+..+..                                            ...
T Consensus        33 ~~si~v~W~~p~~--~~g~i~~Y~i~~~~~~~~--------------------------------------------~~~   66 (113)
T d1x5ia1          33 VTSIVVSWTPPEN--QNIVVRGYAIGYGIGSPH--------------------------------------------AQT   66 (113)
T ss_dssp             TTEEEEEEECCSC--TTBCCCEEEEEECSSCGG--------------------------------------------GEE
T ss_pred             CCEEEEEEEcccc--CCccEEEEEEEeeecccc--------------------------------------------cee
Confidence            4678899986543  567888999998753111                                            011


Q ss_pred             EEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeC
Q psy11701        695 IVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVT  738 (745)
Q Consensus       695 ~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t  738 (745)
                      .....+.+.+.|.+|.|++.|.|+|+|.|.+|.|+++. ..++|
T Consensus        67 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~~~-~~~~T  109 (113)
T d1x5ia1          67 IKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLY-ESAVT  109 (113)
T ss_dssp             EECCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCC-CCEEC
T ss_pred             eeeeCCccEEEEeccccCcEEEEEEEEECCCcCCCCee-eEEEe
Confidence            22356788999999999999999999999999998865 44555

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=9.2e-11  Score=94.09  Aligned_cols=97  Identities=19%  Similarity=0.216  Sum_probs=74.0

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCce---eEEEEccCceeEEEecccccCccee
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSI---RELIVNKGESTTTEVDKFVPASKNF  477 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~L~~~~~Y~  477 (745)
                      .|.+|.++.+.. .+.+++.|.|+++  .+.++++.+|.|+|+.........   ............+.|.+|.+++.|.
T Consensus        10 ~P~~P~~~~~~~-~~~~sv~l~W~pp--~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~   86 (111)
T d1wisa1          10 LPGPPTNLGISN-IGPRSVTLQFRPG--YDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYS   86 (111)
T ss_dssp             CCCCCEEEEEES-CCSSCEEEEEECC--CCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEEC
T ss_pred             CCcCCCCCEEEE-cCCCEEEEEEeCC--CCCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEEE
Confidence            367888888877 7899999999974  356788999999887765443321   1122225667789999999999999


Q ss_pred             EEEEEecCCCCCCCCcce-EEeCC
Q psy11701        478 ARVLAFNGAYNGPPSEII-SFVTP  500 (745)
Q Consensus       478 ~~V~a~n~~G~g~~S~~~-~~~t~  500 (745)
                      |+|+|.|..|.|++|.+. .++|.
T Consensus        87 frV~A~N~~G~s~~S~~s~~~~Tl  110 (111)
T d1wisa1          87 FRMRQVNIVGTSPPSQPSRKIQTL  110 (111)
T ss_dssp             CCCEEECSSCBCCCCCCCCCEECC
T ss_pred             EEEEEEcCCcCCCCcCCCCCEEcc
Confidence            999999999999998753 35553

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6.5e-11  Score=94.05  Aligned_cols=96  Identities=19%  Similarity=0.342  Sum_probs=75.2

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      ..+.||+++.+.  .+.++|.|.|+++.  ..++++.+|.|+|+..... +......+ ......++|.+|.+++.|.|+
T Consensus         6 s~~sPP~~~~~~--~t~~si~l~W~pp~--~~~~~i~~Y~v~~~~~~~~-~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~r   79 (108)
T d1v5ja_           6 SGLSPPRGLVAV--RTPRGVLLHWDPPE--LVPKRLDGYVLEGRQGSQG-WEVLDPAV-AGTETELLVPGLIKDVLYEFR   79 (108)
T ss_dssp             CCCCCCEEEEEE--ECSSSEEEEEECCS--CCSSCCCBEEEEEEETTCC-CEEEEEEE-CSSCCEEECCCCCTTSCEECC
T ss_pred             CCCCcCCCeEEE--EcCCEEEEEEEecc--cCCCceeEEEEEeeeeeee-eeeccccc-cceeeeEEEEeccCCcEEEEE
Confidence            346789998774  57789999999843  4567899999999876443 22222234 567788999999999999999


Q ss_pred             EEEecCCCCCCCCcceEEeCCC
Q psy11701        480 VLAFNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~~t~~  501 (745)
                      |+|+|..|.|++|..+.++|..
T Consensus        80 V~A~n~~g~s~~S~~~~~~T~~  101 (108)
T d1v5ja_          80 LVAFAGSFVSDPSNTANVSTSG  101 (108)
T ss_dssp             BEEEETTEEEEECSCCCCCCSS
T ss_pred             EEEEeCCCEeCCcCceEEECCC
Confidence            9999999999999888887743

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.2e-10  Score=90.40  Aligned_cols=93  Identities=14%  Similarity=0.228  Sum_probs=70.7

Q ss_pred             CCCCCCCceeEEEc--CCceEEEEeeCCCC---CCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCc
Q psy11701        502 GVPGTVQSLEAIPL--GSSAFYLKWVKPEQ---PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST  576 (745)
Q Consensus       502 ~~P~~p~~~~~~~~--~~~~i~l~W~~p~~---~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t  576 (745)
                      ..|.||.++.+..+  +.++|.|+|++|..   ..+.+..|.++|+..+...+....       ......++|.+|.|++
T Consensus         6 VkP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~-------~~~~~~~~i~~L~~~t   78 (109)
T d1uc6a_           6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVE-------LSNGTAHTITDAYAGK   78 (109)
T ss_dssp             CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEE-------ESSCSEEEETTCCSSS
T ss_pred             EECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEec-------cCCceeEEeCCCCCCC
Confidence            46889999998765  56789999999863   334578899999987766554332       3456789999999999


Q ss_pred             cEEEEEEEEecCCCCCCcceeeeccc
Q psy11701        577 KYRIHLAGYTKAGDGAESKYLFYVPF  602 (745)
Q Consensus       577 ~Y~~~V~a~n~~G~g~~S~~~~~~~~  602 (745)
                      .|.|+|+|.|. |.|.+|+++..+..
T Consensus        79 ~Y~~rVrA~~~-~~g~wS~WS~~~~~  103 (109)
T d1uc6a_          79 EYIIQVAAKDN-EIGTWSDWSVAAHA  103 (109)
T ss_dssp             CEEEEEECCBS-SSCCCCCCCEEEEE
T ss_pred             EEEEEEEEEEC-CCCCcCCCCCCEEe
Confidence            99999999874 66777766554443

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.3e-10  Score=90.20  Aligned_cols=92  Identities=20%  Similarity=0.302  Sum_probs=73.9

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCC---CceeEEEEccCceeEEEecccccCccee
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGE---GSIRELIVNKGESTTTEVDKFVPASKNF  477 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~L~~~~~Y~  477 (745)
                      .|.+|.++++.. .+.+++.|+|+++  .+.+|++.+|.|.|+......   ..+............++|.+|++++.|.
T Consensus         2 ~P~~P~~~~~~~-~~~~sv~v~W~~P--~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   78 (103)
T d1qg3a2           2 VPSEPGRLAFNV-VSSTVTQLSWAEP--AETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR   78 (103)
T ss_dssp             CCCCCCCCEEEE-EETTEEEEECCCC--SCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEE
T ss_pred             cCccCCCcEEEE-ecCCEEEEEEEEC--ccCCCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEE
Confidence            478999999988 8999999999984  356789999999987765432   2223333335667789999999999999


Q ss_pred             EEEEEecCCCCCCCCcce
Q psy11701        478 ARVLAFNGAYNGPPSEII  495 (745)
Q Consensus       478 ~~V~a~n~~G~g~~S~~~  495 (745)
                      |+|+|+|..|.|+++...
T Consensus        79 ~~V~A~n~~G~g~~s~~~   96 (103)
T d1qg3a2          79 YTVKARNGAGWGPEREAI   96 (103)
T ss_dssp             EEEEEEETTEECCCEEEE
T ss_pred             EEEEEEcCCccCCCcccc
Confidence            999999999999887643

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.1e-11  Score=97.64  Aligned_cols=106  Identities=18%  Similarity=0.115  Sum_probs=78.2

Q ss_pred             cCCCCCCceeEE-eecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        401 PLEAPSNFTLIQ-VIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       401 pp~~P~~~~~~~-~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .|.+|.++.+.. ..+..++.|+|+++.  ..++.+.+|.|+|+...+.................+.|.+|.+++.|.|+
T Consensus         4 kP~pP~~~~v~~~~~~~~si~v~W~~p~--~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~   81 (115)
T d1bqua2           4 KPNPPHNLSVINSEELSSILKLTWTNPS--IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR   81 (115)
T ss_dssp             ECCCCEEEEEECC--CCSCEEEEEECCG--GGGTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEE
T ss_pred             ECCCCCCCEEEEeccCCCEEEEEEeecc--ccccceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEE
Confidence            468898887752 145688999999743  55678999999998776544322111112356678999999999999999


Q ss_pred             EEEecCCCCCCCC---cceEEeCCCCCCCCCC
Q psy11701        480 VLAFNGAYNGPPS---EIISFVTPEGVPGTVQ  508 (745)
Q Consensus       480 V~a~n~~G~g~~S---~~~~~~t~~~~P~~p~  508 (745)
                      |+|.|..|.|.+|   ..+.++|.+.+|++|+
T Consensus        82 V~a~~~~G~g~~S~~S~~~~~~T~~~~P~~~P  113 (115)
T d1bqua2          82 IRCMKEDGKGYWSDWSEEASGITYEDRPSKEP  113 (115)
T ss_dssp             EEEEETTSCSCCCCCCCCEEEEECCCHHHHHH
T ss_pred             EEEEeCCCccCCcCCcCCEEEECCCCCCCCCc
Confidence            9999999997654   5778888888886554

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.08  E-value=2.6e-10  Score=86.30  Aligned_cols=85  Identities=20%  Similarity=0.194  Sum_probs=67.8

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV  480 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V  480 (745)
                      +|.+|.++++.. .+.+++.|+|+++..   ++.+.+|.|.+...       ...   ......+++.+|.+++.|.|+|
T Consensus         3 AP~~P~~l~~~~-~~~~sv~lsW~~p~~---~~~i~~Y~i~~~~~-------~~~---~~~~t~~~~~~L~p~t~Y~~~V   68 (88)
T d1k85a_           3 APTAPTNLASTA-QTTSSITLSWTASTD---NVGVTGYDVYNGTA-------LAT---TVTGTTATISGLAADTSYTFTV   68 (88)
T ss_dssp             SCCCCEEEEEEE-ECSSCEEEEEECCSC---CSSEEEEEEEESSS-------EEE---EESSSEEEECCCCSSCEEEEEE
T ss_pred             CcCCCCCcEEEE-ecCCEEEEEEeCCCC---CCCEEEEEEEccce-------EEE---ecCCCEEEECCCCCCCEEEEEE
Confidence            578999999988 899999999998532   34588999854211       111   3356789999999999999999


Q ss_pred             EEecCCC-CCCCCcceEEeC
Q psy11701        481 LAFNGAY-NGPPSEIISFVT  499 (745)
Q Consensus       481 ~a~n~~G-~g~~S~~~~~~t  499 (745)
                      +|+|..| .|++|..+.++|
T Consensus        69 ~A~n~~G~~s~~S~~v~vtT   88 (88)
T d1k85a_          69 KAKDAAGNVSAASNAVSVKT   88 (88)
T ss_dssp             EEEETTTEECCCCCCEEEEC
T ss_pred             EEEECCCCcCCCCcCEEEEC
Confidence            9999999 699998888775

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3e-10  Score=89.74  Aligned_cols=96  Identities=18%  Similarity=0.175  Sum_probs=69.0

Q ss_pred             CCCCCCceeEEEcC-CceEEEEeeCCCC-CCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEE
Q psy11701        503 VPGTVQSLEAIPLG-SSAFYLKWVKPEQ-PNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI  580 (745)
Q Consensus       503 ~P~~p~~~~~~~~~-~~~i~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  580 (745)
                      .|.||.++.+.... .+.+.|+|.+|.. .++.+..|.|+|+..+...+....     ....+.+++.|.+|.|++.|.|
T Consensus         4 k~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~-----~~~~~~t~~~i~~L~p~t~Y~~   78 (105)
T d1erna2           4 LLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRV-----EILEGRTECVLSNLRGRTRYTF   78 (105)
T ss_dssp             CCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEE-----EECTTCCEEEECSCCSSCEEEE
T ss_pred             ccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEE-----eecCCccEEEEeCCCCCcEEEE
Confidence            57888999988764 4569999998764 456788999999987654332221     1144567899999999999999


Q ss_pred             EEEEEec--CCCCCCcceeeecccC
Q psy11701        581 HLAGYTK--AGDGAESKYLFYVPFK  603 (745)
Q Consensus       581 ~V~a~n~--~G~g~~S~~~~~~~~~  603 (745)
                      +|+|.+.  .|.|.+|+++..+...
T Consensus        79 rVRar~~~~~~~G~WSeWS~~v~~~  103 (105)
T d1erna2          79 AVRARMAEPSFGGFWSAWSEPVSLL  103 (105)
T ss_dssp             EEEEEECSSSCCBCCCCCCCCEEEE
T ss_pred             EEEEEECCCCCCCCCCCCCCCEEee
Confidence            9999865  3556777776544433

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.3e-10  Score=92.13  Aligned_cols=96  Identities=16%  Similarity=0.222  Sum_probs=68.7

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCC------CCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCC
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQP------NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS  575 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~------~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~  575 (745)
                      ..|.+|.+|.+.. +.+++.|+|++|...      +..+..|.|+|+..+...+.....    ........+.+.+|.|+
T Consensus         4 vkP~pP~nl~v~~-~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~L~p~   78 (114)
T d2gysa2           4 VQPPEPRDLQIST-DQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAIL----LSNTSQATLGPEHLMPS   78 (114)
T ss_dssp             BCCCCCEEEEEEE-ETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEE----EESSSEEEECTTTCCTT
T ss_pred             ccCCcCCCeEEEE-eCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEe----eccCceEEEEeCCCCCC
Confidence            4689999999864 667899999998642      335678999999876543332221    11445678999999999


Q ss_pred             ccEEEEEEEEecCCCCC---Ccceeeeccc
Q psy11701        576 TKYRIHLAGYTKAGDGA---ESKYLFYVPF  602 (745)
Q Consensus       576 t~Y~~~V~a~n~~G~g~---~S~~~~~~~~  602 (745)
                      +.|.|+|+|.|..|.|.   +|+++..+..
T Consensus        79 t~Y~~rVRa~~~~g~~~~g~wS~WS~~v~~  108 (114)
T d2gysa2          79 STYVARVRTRLAPGSRLSGRPSKWSPEVCW  108 (114)
T ss_dssp             CEEEEEEEEEECTTSSCCBCCCCCCCCEEE
T ss_pred             cEEEEEEEEEeCCCCCCCCCccCCcCCEee
Confidence            99999999999998753   4555443333

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2e-10  Score=88.62  Aligned_cols=92  Identities=21%  Similarity=0.307  Sum_probs=71.2

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEE
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL  481 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~  481 (745)
                      |.+|. +.+.. ...+++.|.|+++  .+.+|.+.+|.|+|+......  +....+ ......++|.+|.+++.|.|+|+
T Consensus         1 P~~P~-~~~~~-~~~~sv~l~W~pP--~~~~g~i~~Y~i~~~~~~~~~--~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~   73 (94)
T d2dn7a1           1 PGRPT-MMIST-TAMNTALLQWHPP--KELPGELLGYRLQYCRADEAR--PNTIDF-GKDDQHFTVTGLHKGTTYIFRLA   73 (94)
T ss_dssp             CCCCE-EEEEE-CSTTEEEEEEECC--SSCSSCCCEEEEEEEETTCSS--CEEEEE-ETTCCEEEEECCCTTCEEEEEEE
T ss_pred             CCCCc-EeEEE-EeCCEEEEEEeCC--CCCCCceEEEEEEEEEcCCCC--cEEEEc-CCCccEEEEEccCCeeEEEEEEE
Confidence            46775 44444 7889999999984  345788999999998776533  444555 56788999999999999999999


Q ss_pred             EecCCCCCCCCcceEEeCCC
Q psy11701        482 AFNGAYNGPPSEIISFVTPE  501 (745)
Q Consensus       482 a~n~~G~g~~S~~~~~~t~~  501 (745)
                      |.|..|.|+++.. .+.|.+
T Consensus        74 A~n~~G~g~~s~~-~~~T~e   92 (94)
T d2dn7a1          74 AKNRAGLGEEFEK-EIRTPE   92 (94)
T ss_dssp             EEETTEEEEEEEE-EEECCC
T ss_pred             EEcCCcCCCCccE-EEeeCC
Confidence            9999999988764 455543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.5e-12  Score=102.66  Aligned_cols=96  Identities=20%  Similarity=0.310  Sum_probs=74.2

Q ss_pred             EEEEecCeEEecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeCCEeccCCCCCCc-ee---ec---CceEEEccCCCCC
Q psy11701        120 LSVLAAPYFTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNGKPISQAPPNPR-RK---VG---PNRITIENLRKSD  191 (745)
Q Consensus       120 l~V~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g~~~~~~~~~~~-~~---~~---~~~L~i~~v~~~d  191 (745)
                      |.|..||.+. .+....+.+|+++.|.|.+.+. |.+.+.|++++..+........ ..   ..   .+.|.|.++...|
T Consensus         2 L~V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            5677788775 4566778899999999999885 5568999999988864332211 11   11   1369999999999


Q ss_pred             -CEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        192 -TGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       192 -~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                       +|.|+|.|.|..|.....+.|.|..
T Consensus        81 ~~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          81 FQTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             HHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             CCeEEEEEEEECCCeEEEEEEEEEEC
Confidence             7999999999999999988888763

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=4.2e-10  Score=86.55  Aligned_cols=90  Identities=19%  Similarity=0.199  Sum_probs=70.6

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      .+|.++++.. .+.+++.|.|+++.     +.+.+|.|.|+...+.................++|.+|.|++.|.|+|.|
T Consensus         2 daP~~l~v~~-~~~~sv~v~W~~p~-----~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   75 (92)
T d1tdqa2           2 DAPKNLRVGS-RTATSLDLEWDNSE-----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISA   75 (92)
T ss_dssp             CCCEEEEEEE-ECSSCEEEEEECCS-----SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEE
T ss_pred             ccCcCCEEEE-ecCCEEEEEEEecC-----CcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEE
Confidence            5788999988 89999999999852     45789999998766544333322222556788999999999999999999


Q ss_pred             ecCCCCCCCCcceEEeC
Q psy11701        483 FNGAYNGPPSEIISFVT  499 (745)
Q Consensus       483 ~n~~G~g~~S~~~~~~t  499 (745)
                      +|..|.|.++. +.++|
T Consensus        76 ~~~~g~s~p~~-~~~~T   91 (92)
T d1tdqa2          76 VMNSKQSIPAT-MNART   91 (92)
T ss_dssp             EETTEECCCEE-EEEEC
T ss_pred             EeCCCEecCEE-EEEEC
Confidence            99999998764 55655

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.4e-10  Score=88.56  Aligned_cols=89  Identities=13%  Similarity=0.148  Sum_probs=72.0

Q ss_pred             cCCCCCCceeEEeec--CceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeE
Q psy11701        401 PLEAPSNFTLIQVID--AKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA  478 (745)
Q Consensus       401 pp~~P~~~~~~~~~~--~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~  478 (745)
                      .|.+|.++++.. ..  ...+.|+|+++...+.++.+..|.|+|+..+..  .+....+ ......++|.+|.+++.|.|
T Consensus         1 kP~pP~~l~v~~-~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~--~~~~~~~-~~~~~~~~i~~L~p~t~Y~~   76 (104)
T d1n26a3           1 QPDPPANITVTA-VARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSK--TFTTWMV-KDLQHHCVIHDAWSGLRHVV   76 (104)
T ss_dssp             CCCCCEEEEEEE-CTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCS--CCEEEEC-GGGCSEEEESSCCTTCCEEE
T ss_pred             CCcCCCCCEEEE-EecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCC--ceeeecc-ccceEEEEECCCCCCCEEEE
Confidence            378999998866 43  467999999976556677899999999876543  4455555 56778999999999999999


Q ss_pred             EEEEecCCCCCCCCc
Q psy11701        479 RVLAFNGAYNGPPSE  493 (745)
Q Consensus       479 ~V~a~n~~G~g~~S~  493 (745)
                      +|+|.|..|.|.+|.
T Consensus        77 rVra~n~~g~g~wSe   91 (104)
T d1n26a3          77 QLRAQEEFGQGEWSE   91 (104)
T ss_dssp             EEEEEETTTBSCCCC
T ss_pred             EEEEEeCCCccCCcC
Confidence            999999999988775

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.1e-10  Score=86.61  Aligned_cols=83  Identities=24%  Similarity=0.358  Sum_probs=62.9

Q ss_pred             CCCCCCCCcceeEEEeecCccccCCCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecC
Q psy11701        608 VEGRGSTPNNLVISWTAMPEIEHNAPHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDG  687 (745)
Q Consensus       608 ~~~~~~~p~~~~v~W~~~~~~~~~g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~  687 (745)
                      +.+....++++.|+|+++.     |.+.+|.|.|++.++.                                        
T Consensus         8 l~~~~~~~~sv~l~W~~p~-----~~~~~Y~v~~~~~~~~----------------------------------------   42 (93)
T d2cuma1           8 LEAKEVTPRTALLTWTEPP-----VRPAGYLLSFHTPGGQ----------------------------------------   42 (93)
T ss_dssp             EEEESCCSSCEEEEEECCS-----SCCSEEEEEEECTTSC----------------------------------------
T ss_pred             CEEEEeCCCEEEEEEEccc-----cccccEEEEEEccccc----------------------------------------
Confidence            3344566889999998764     3568999999865221                                        


Q ss_pred             CCCeEEEEEecCCCcEEEecccccCCcceeEEEEecCcccCCCCcceEEeCCC
Q psy11701        688 EGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTPE  740 (745)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G~g~~s~~~~~~t~~  740 (745)
                          ......+++.+++.|.+|.|++.|.|+|.|.|..|.|+++. ..|+|..
T Consensus        43 ----~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~tT~g   90 (93)
T d2cuma1          43 ----TQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVS-TSFTTGG   90 (93)
T ss_dssp             ----EEEEEECSSCSEEEECSCCTTCEEEEEEEEEBTTBCCCCEE-EEEECCC
T ss_pred             ----cEEEEECCCccEEEEeCccCCCEEEEEEEEEeCCCCCCCEE-EEEEeCC
Confidence                11112256788999999999999999999999999999876 7788743

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.4e-10  Score=89.77  Aligned_cols=99  Identities=19%  Similarity=0.284  Sum_probs=76.6

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEE
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL  481 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~  481 (745)
                      |.+|.++.+.. .+.+++.|+|+++.     +.+.+|.|.|+..+..   .....+ ......++|.+|.|++.|.|+|.
T Consensus         1 P~~P~~l~~~~-~t~~si~l~W~~p~-----~~i~~Y~v~~~~~~~~---~~~~~~-~~~~~~~~l~~L~p~t~Y~~~V~   70 (102)
T d2cuha1           1 PDGPTQLRALN-LTEGFAVLHWKPPQ-----NPVDTYDIQVTAPGAP---PLQAET-PGSAVDYPLHDLVLHTNYTATVR   70 (102)
T ss_dssp             CSSCEEEECCC-CSSSCEEEEEECCS-----SCCSEEEEEEECSSSC---CEEEEE-ETTCSEEEECSCCSSSEEEEEEE
T ss_pred             CcCCCccEEEE-eCCCEEEEEEEeee-----ccceeeEEEEEecccc---ceeeee-eeeeeeEEEccEEeeEEEEEEEE
Confidence            57899999988 89999999999842     4578999998765432   233445 56778999999999999999999


Q ss_pred             EecCCCCCCCCcceEEeCCCCCCCCCCceeEEE
Q psy11701        482 AFNGAYNGPPSEIISFVTPEGVPGTVQSLEAIP  514 (745)
Q Consensus       482 a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~~~~  514 (745)
                      |.|..|.|.++. ..++|..+   +|.++.+..
T Consensus        71 a~~~~~~s~~~~-~~~~T~~~---~P~~l~~~~   99 (102)
T d2cuha1          71 GLRGPNLTSPAS-ITFTTGLE---APRDLEAKE   99 (102)
T ss_dssp             EEETTEECCCEE-EEEESCCC---CTTTSSSCC
T ss_pred             EEeCCCCcCCEE-EEEECCCC---CCCCCEeec
Confidence            999999887764 56777544   456665544

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=2e-10  Score=93.73  Aligned_cols=96  Identities=17%  Similarity=0.135  Sum_probs=72.2

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCce-----eE---------EEEccCceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSI-----RE---------LIVNKGESTTT  465 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~-----~~---------~~~~~~~~~~~  465 (745)
                      ..|.+|.++.+.  .+.+++.|+|+++.  +.+|.|++|.|+|+.........     ..         ..+ ......+
T Consensus         6 ~~P~aP~~v~v~--~~~~si~l~W~~P~--~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   80 (123)
T d1wfta_           6 SGPGAPSTVRIS--KNVDGIHLSWEPPT--SPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTV-TAGQLAN   80 (123)
T ss_dssp             SCCCCCEEEEEE--ECSSEEEEEEECCS--SCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEE-EHHHHTT
T ss_pred             CCCcCCcccEEE--eCCCEEEEEecCch--hcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEee-cCCccEE
Confidence            357889888875  46789999999843  55789999999998765532211     00         112 2234567


Q ss_pred             EecccccCcceeEEEEEecCCCCCCCCcceEEeCC
Q psy11701        466 EVDKFVPASKNFARVLAFNGAYNGPPSEIISFVTP  500 (745)
Q Consensus       466 ~i~~L~~~~~Y~~~V~a~n~~G~g~~S~~~~~~t~  500 (745)
                      .|.+|.+++.|.|+|+|.|..|.|++|....++|.
T Consensus        81 ~i~~L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~  115 (123)
T d1wfta_          81 AHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGN  115 (123)
T ss_dssp             CCCBCSSSCEEEEEEEEBSSSSBCCCEEEEEECCS
T ss_pred             EEcCCCCCCEEEEEEEEecCCcCCCCCCcEEEEec
Confidence            78899999999999999999999999998777773

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.00  E-value=3.4e-11  Score=91.34  Aligned_cols=83  Identities=19%  Similarity=0.230  Sum_probs=63.4

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceee-cCceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKV-GPNRITIENLRKSDTGNYGCNATNSLGYV  206 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~g~~  206 (745)
                      |...+.+..+.+|+++.|.|.+. .|.+.+.|+|||..+........... ....|.|.++..+|+|.|+|.|.|..+  
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~--   80 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS--   80 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBCS-SSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC--
T ss_pred             EEcCCcCEEEeCCCcEEEEEEEC-CCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE--
Confidence            34557888999999999999985 68889999999999875543322222 345899999999999999999966443  


Q ss_pred             EEEEEEEEe
Q psy11701        207 YKDVYVNVL  215 (745)
Q Consensus       207 ~~~~~l~v~  215 (745)
                        ++.|.|.
T Consensus        81 --sa~l~V~   87 (89)
T d1tiua_          81 --AANLKVK   87 (89)
T ss_dssp             --CEEEEEE
T ss_pred             --EEEEEEE
Confidence              4555554

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=1.4e-09  Score=85.73  Aligned_cols=86  Identities=9%  Similarity=0.009  Sum_probs=61.4

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEe
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAF  483 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~  483 (745)
                      .|..+.+.. .+.+++.|.|+++.  ..++.+++|.|+|+...+.. .+..+.........++|.+|.+++.|.|+|+|+
T Consensus        10 ~P~~p~~~~-~~~~~i~v~W~pp~--~~~~~~~~Y~i~y~~~~~~~-~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~   85 (106)
T d1cd9b2          10 LDIGPDVVS-HQPGCLWLSWKPWK--PSEYMEQECELRYQPQLKGA-NWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCI   85 (106)
T ss_dssp             CCC--------CCSCEEEEEECCG--GGTTSCEEEEEEEEESSTTC-CCEEEEEEESCEEEEEECCCCSCSCEEEEEEEE
T ss_pred             CCCCCeEec-CCCCEEEEEEcCcc--cCCccceEEEEEEeeccccc-cceeeecccCCceEEEEeccCCCeEEEEEEEEE
Confidence            344555555 78899999999853  45667899999998765533 233333325678889999999999999999999


Q ss_pred             cCCCCCCCCc
Q psy11701        484 NGAYNGPPSE  493 (745)
Q Consensus       484 n~~G~g~~S~  493 (745)
                      |..|.|.+|.
T Consensus        86 ~~~g~g~wS~   95 (106)
T d1cd9b2          86 RSSLPGFWSP   95 (106)
T ss_dssp             ESSSCCCCCC
T ss_pred             eCCCCCCCcC
Confidence            9999977665

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=7e-10  Score=87.78  Aligned_cols=86  Identities=16%  Similarity=0.183  Sum_probs=60.0

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEE--E---------ccCceeEEEeccccc
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELI--V---------NKGESTTTEVDKFVP  472 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~--~---------~~~~~~~~~i~~L~~  472 (745)
                      ||..+.+.. .+.++|.|+|.++.  +.+++|++|.|+|+...... .+....  .         .......++|.+|++
T Consensus         2 PP~~p~v~~-~~~~sv~l~W~~P~--~~g~~I~~Y~ie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p   77 (107)
T d2ic2a1           2 PPTPPNVTR-LSDESVMLRWMVPR--NDGLPIVIFKVQYRMVGKRK-NWQTTNDNIPYGKPKWNSELGKSFTASVTDLKP   77 (107)
T ss_dssp             CCCCCEEEE-CC---EEEEEEEEC--CSSCCEEEEEEEEEECC----CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCS
T ss_pred             cCcCCEEEE-EECCEEEEEEEeCc--cccCCceEEEEEEEeccCCC-cceEEEeeeeccceeeeecccceeEEEECCCcC
Confidence            344445666 78999999999953  56788999999997655422 221111  1         123456799999999


Q ss_pred             CcceeEEEEEecCCCCCCCCc
Q psy11701        473 ASKNFARVLAFNGAYNGPPSE  493 (745)
Q Consensus       473 ~~~Y~~~V~a~n~~G~g~~S~  493 (745)
                      ++.|.|+|.|.|..|.|++|.
T Consensus        78 ~t~Y~frV~A~N~~G~s~~S~   98 (107)
T d2ic2a1          78 QHTYRFRILAVYSNNDNKESN   98 (107)
T ss_dssp             SEEEEEEEEEEETTSCEEECC
T ss_pred             CcEEEEEEEEEcCCCCCCCCC
Confidence            999999999999999998775

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=1.3e-09  Score=85.55  Aligned_cols=95  Identities=19%  Similarity=0.119  Sum_probs=71.4

Q ss_pred             cCCCCCCceeEE---eecCceeEEEEEeCCCC--CcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcc
Q psy11701        401 PLEAPSNFTLIQ---VIDAKKAVVSWNPVSPQ--SLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASK  475 (745)
Q Consensus       401 pp~~P~~~~~~~---~~~~~~v~l~W~~~~~~--~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~  475 (745)
                      .|.+|.++++..   .....++.|+|+++...  ..++.++.|.++|+..+...  +....  ......+.|.+|.+++.
T Consensus         2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~--~~~~~--~~~~~~~~i~~L~p~t~   77 (103)
T d1f6fb2           2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEE--WEIHF--TGHQTQFKVFDLYPGQK   77 (103)
T ss_dssp             CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSC--CEEEE--EETCSEEEECCCCTTCE
T ss_pred             CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcc--eeeec--ccceeEEEeCCCCcceE
Confidence            578999887742   14567899999997543  23456789999998766532  22222  34567899999999999


Q ss_pred             eeEEEEEecCCCC-CCCCcceEEeC
Q psy11701        476 NFARVLAFNGAYN-GPPSEIISFVT  499 (745)
Q Consensus       476 Y~~~V~a~n~~G~-g~~S~~~~~~t  499 (745)
                      |.|+|+|.|..|. |++|....+.+
T Consensus        78 Y~~rVra~~~~G~wS~wS~~~~~~~  102 (103)
T d1f6fb2          78 YLVQTRCKPDHGYWSRWSQESSVEM  102 (103)
T ss_dssp             EEEEEEEEESSSCCCCCCCCEEEEC
T ss_pred             EEEEEEEEeCCCCCCCCcCceeeEC
Confidence            9999999999996 88998887765

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7.8e-10  Score=84.36  Aligned_cols=88  Identities=14%  Similarity=0.308  Sum_probs=71.0

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEE
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL  481 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~  481 (745)
                      +.+|.++.+.. .+.+++.|.|+++.     +.+.+|.|.|+..... .......+ ..+...++|.+|.|++.|.|+|.
T Consensus         2 ld~P~~l~v~~-~s~~s~~l~W~~p~-----~~~~~y~v~~~~~~~~-~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~   73 (90)
T d1tena_           2 LDAPSQIEVKD-VTDTTALITWFKPL-----AEIDGIELTYGIKDVP-GDRTTIDL-TEDENQYSIGNLKPDTEYEVSLI   73 (90)
T ss_dssp             CCCCEEEEEES-CCSSCEEEEEECCS-----SCCSEEEEEEEETTCT-TCCEEEEE-ETTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCCCcEEEE-ecCCEEEEEEEeCc-----eEeccEEEEEEEcCCC-ceeEEEEe-cCCcceeeEeeecCCCEEEEEEE
Confidence            47899999988 89999999999742     4578999988876543 33444556 67888999999999999999999


Q ss_pred             EecCCCCCCCCcceEEe
Q psy11701        482 AFNGAYNGPPSEIISFV  498 (745)
Q Consensus       482 a~n~~G~g~~S~~~~~~  498 (745)
                      |+|..|.|+++. ..++
T Consensus        74 a~~~~g~s~~~~-~~~~   89 (90)
T d1tena_          74 SRRGDMSSNPAK-ETFT   89 (90)
T ss_dssp             EEETTEECCCEE-EEEE
T ss_pred             EEeCCCEeCCEE-EEEE
Confidence            999999987754 4444

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.8e-10  Score=87.92  Aligned_cols=93  Identities=23%  Similarity=0.237  Sum_probs=61.5

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCC-cceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQS-LRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~-~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .|.+|.++.+.. .+.+++.|.|.++.... .......|.|+|+...+.................+.+.+|.|++.|.|+
T Consensus         1 kP~~P~~l~v~~-~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   79 (101)
T d1iarb2           1 KPRAPGNLTVHT-NVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRAR   79 (101)
T ss_dssp             CCCCCEEEEEC-----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEE
T ss_pred             CcccCCcCEEEE-EeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEE
Confidence            378999999987 78899999999764322 2234556999998877654433222222445678899999999999999


Q ss_pred             EEEecCCCCCCCCcc
Q psy11701        480 VLAFNGAYNGPPSEI  494 (745)
Q Consensus       480 V~a~n~~G~g~~S~~  494 (745)
                      |+|.|..|.|.+|..
T Consensus        80 VrA~~~~g~g~wSew   94 (101)
T d1iarb2          80 VRAWAQAYNTTWSEW   94 (101)
T ss_dssp             EEEECGGGTCCCCCC
T ss_pred             EEEEcCCCCCCCcCC
Confidence            999999999887764

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.7e-11  Score=97.10  Aligned_cols=91  Identities=22%  Similarity=0.322  Sum_probs=69.4

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeec-CCCeeEEEECCEecCCC--CCeEec----cC--CcEEEEccCCCCC-CEEE
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKDGVPINPS--DRISQG----NY--GKSLIIKHVEFSD-QGSY  102 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~~~~i~~~--~~~~~~----~~--~~~L~i~~~~~~d-~G~Y  102 (745)
                      |+.+ ..++...+.+|+++.|.|.+.|. |.+.+.|++++..+...  .++...    ..  ...|.|.+++.+| +|.|
T Consensus         7 Pp~i-~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y   85 (115)
T d2crya1           7 PPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY   85 (115)
T ss_dssp             SCCE-EEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred             CCEE-ecCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEE
Confidence            4444 35677889999999999999886 45589999999988753  333321    11  1369999999999 6999


Q ss_pred             EEEEEeCCeeeEEEEEEEEEEec
Q psy11701        103 TCEVSNGVGEAKSYSIDLSVLAA  125 (745)
Q Consensus       103 ~C~~~~~~g~~~~~~~~l~V~~~  125 (745)
                      +|.|.|..|... ..+.|.|...
T Consensus        86 ~C~A~N~~G~~~-~~~~L~V~~~  107 (115)
T d2crya1          86 NCTAWNSFGSDT-EIIRLKEQGS  107 (115)
T ss_dssp             EEEEECSSCEEE-EEECCCCSCS
T ss_pred             EEEEEECCCeEE-EEEEEEEECC
Confidence            999999999876 7788877643

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.98  E-value=1.3e-09  Score=82.33  Aligned_cols=86  Identities=14%  Similarity=0.230  Sum_probs=69.1

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      ++|.++++.. .+.+++.|.|+++.     +.+.+|.|.|+....   ......+ ......++|.+|.|++.|.|+|.|
T Consensus         1 DaP~~l~v~~-~t~~sv~v~W~~p~-----~~~~~Y~v~~~~~~~---~~~~~~~-~~~~~~~~~~~L~p~t~Y~v~V~a   70 (87)
T d1qr4a1           1 DNPKDLEVSD-PTETTLSLRWRRPV-----AKFDRYRLTYVSPSG---KKNEMEI-PVDSTSFILRGLDAGTEYTISLVA   70 (87)
T ss_dssp             CCCEEEEEES-CCSSEEEEEEECCS-----SCCSEEEEEEECTTC---CEEEEEE-CTTCSEEEEESCCSSCEEEEEEEE
T ss_pred             CcCcCcEEEE-ecCCEEEEEEECCC-----CCcceeEEEeecCCc---ceeEEeC-CCCcCEEEECCCCcCCEEEEEEEE
Confidence            4788999988 88999999999853     457899998876543   2344556 677889999999999999999999


Q ss_pred             ecCCCCCCCCcceEEeC
Q psy11701        483 FNGAYNGPPSEIISFVT  499 (745)
Q Consensus       483 ~n~~G~g~~S~~~~~~t  499 (745)
                      +|..|.|+++. +.++|
T Consensus        71 ~~~~~~s~~~~-~~~~T   86 (87)
T d1qr4a1          71 EKGRHKSKPTT-IKGST   86 (87)
T ss_dssp             ESSSCBCCCEE-EEEEC
T ss_pred             EcCCCCccCEE-EEEEc
Confidence            99999987764 44554

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.98  E-value=6.8e-11  Score=93.67  Aligned_cols=73  Identities=22%  Similarity=0.457  Sum_probs=57.9

Q ss_pred             cceeEecCCcEEEEEEE-eecCCCeeEEEECCEecCCC-------CCeEeccCCcEEEEccCCCCCCE---EEEEEEEeC
Q psy11701         41 KKEVALRNKKVELFCIF-GGTPLPQTIWSKDGVPINPS-------DRISQGNYGKSLIIKHVEFSDQG---SYTCEVSNG  109 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~-~g~p~~~v~W~~~~~~i~~~-------~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~~~~~  109 (745)
                      .+.++.||++++|.|.+ .|.|.|.+.|+|++..+...       .++... .+++|.|.+++.+|+|   .|+|.|.|.
T Consensus        10 ~~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~gd~g~Y~C~A~N~   88 (111)
T d1biha2          10 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG-PDGNLYFTIVTKEDVSDIYKYVCTAKNA   88 (111)
T ss_dssp             EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC-TTSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             ccccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccc-cccccEEeeeEeeccCCceEEEEEEEeC
Confidence            45567899999999997 89999999999987766432       223332 3457999999998876   899999999


Q ss_pred             CeeeE
Q psy11701        110 VGEAK  114 (745)
Q Consensus       110 ~g~~~  114 (745)
                      .|...
T Consensus        89 ~g~~~   93 (111)
T d1biha2          89 AVDEE   93 (111)
T ss_dssp             TCSSC
T ss_pred             CCCce
Confidence            88766

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.4e-09  Score=85.94  Aligned_cols=99  Identities=15%  Similarity=0.146  Sum_probs=74.9

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCC----cceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcc
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQS----LRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASK  475 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~----~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~  475 (745)
                      ..|.+|.++.+.  .+.+++.|+|+++....    ....+..|.++|+.............. ......+.+.+|.+++.
T Consensus         4 vkP~pP~nl~v~--~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~p~t~   80 (114)
T d2gysa2           4 VQPPEPRDLQIS--TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLS-NTSQATLGPEHLMPSST   80 (114)
T ss_dssp             BCCCCCEEEEEE--EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEE-SSSEEEECTTTCCTTCE
T ss_pred             ccCCcCCCeEEE--EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeec-cCceEEEEeCCCCCCcE
Confidence            458999999985  46679999999865432    233456799999887766555544444 56677899999999999


Q ss_pred             eeEEEEEecCCCC------CCCCcceEEeCCC
Q psy11701        476 NFARVLAFNGAYN------GPPSEIISFVTPE  501 (745)
Q Consensus       476 Y~~~V~a~n~~G~------g~~S~~~~~~t~~  501 (745)
                      |.|+|+|.|..|.      |++|.++.+.|.+
T Consensus        81 Y~~rVRa~~~~g~~~~g~wS~WS~~v~~~t~p  112 (114)
T d2gysa2          81 YVARVRTRLAPGSRLSGRPSKWSPEVCWDSQP  112 (114)
T ss_dssp             EEEEEEEEECTTSSCCBCCCCCCCCEEEECCC
T ss_pred             EEEEEEEEeCCCCCCCCCccCCcCCEeeeCcC
Confidence            9999999999886      4677788888754

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.97  E-value=2e-10  Score=90.93  Aligned_cols=82  Identities=16%  Similarity=0.203  Sum_probs=62.4

Q ss_pred             eeEeeCCCeEEEEEEE-eecCCCeEEEEeCCEeccCCCC----CCce-eecCceEEEccCCCCCCE---EEEEEEEeCCc
Q psy11701        134 FINAAEEETVTFECKA-SGLPEPEIHWVHNGKPISQAPP----NPRR-KVGPNRITIENLRKSDTG---NYGCNATNSLG  204 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~g~~~~~~~~----~~~~-~~~~~~L~i~~v~~~d~G---~Y~C~~~~~~g  204 (745)
                      +.++.+|+++.|.|.+ .|.|.|.+.|+|++..+.....    ..+. ...++.|.|.+++.+|+|   .|.|.|.|..|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence            4457899999999997 8999999999998776542221    1222 234678999999998877   79999999999


Q ss_pred             eEEEEEEEEEe
Q psy11701        205 YVYKDVYVNVL  215 (745)
Q Consensus       205 ~~~~~~~l~v~  215 (745)
                      .......+.+.
T Consensus        91 ~~~~~~~~~~i  101 (111)
T d1biha2          91 DEEVVLVEYEI  101 (111)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CceEEEEEEEe
Confidence            87666544443

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.9e-09  Score=85.08  Aligned_cols=96  Identities=15%  Similarity=0.090  Sum_probs=68.4

Q ss_pred             cCCCCCCceeEE---eecCceeEEEEEeCCCC--CcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcc
Q psy11701        401 PLEAPSNFTLIQ---VIDAKKAVVSWNPVSPQ--SLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASK  475 (745)
Q Consensus       401 pp~~P~~~~~~~---~~~~~~v~l~W~~~~~~--~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~  475 (745)
                      .|.+|.++.+..   ..+..++.|+|+++...  ...+.+..|.++|+.......  ... . ......++|.+|.+++.
T Consensus         2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~--~~~-~-~~~~~~~~i~~L~p~t~   77 (104)
T d3d48r2           2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW--EIH-F-AGQQTEFKILSLHPGQK   77 (104)
T ss_dssp             CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSC--EEE-E-EETCSEEEECC--CCCE
T ss_pred             CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccce--eee-c-cccccEEEECCCCCCCE
Confidence            578998887742   13567899999987543  234457789998877654322  222 2 34667899999999999


Q ss_pred             eeEEEEEecCCCC-CCCCcceEEeCC
Q psy11701        476 NFARVLAFNGAYN-GPPSEIISFVTP  500 (745)
Q Consensus       476 Y~~~V~a~n~~G~-g~~S~~~~~~t~  500 (745)
                      |.|+|+|.|..|. |++|..+.+.|+
T Consensus        78 Y~~rVrA~n~~G~ws~wS~~~~v~tP  103 (104)
T d3d48r2          78 YLVQVRCKPDHGYWSAWSPATFIQIP  103 (104)
T ss_dssp             EEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred             EEEEEEEEeCCCCCCCCcCCEEEECc
Confidence            9999999999997 999999988763

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=9e-10  Score=91.86  Aligned_cols=106  Identities=25%  Similarity=0.334  Sum_probs=77.1

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCc-------ceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCc
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSL-------RGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPAS  474 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~-------~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~  474 (745)
                      +..|....+.. ++.+++.|.|+++.....       ...+..|.+.++.... ...+.. .. ......++|.+|+|++
T Consensus        18 ~~~~~~P~V~~-v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~-~~~~~~-~~-~~~~~~~~i~~L~P~t   93 (137)
T d1wk0a_          18 LSNIVKPVASD-IQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGK-DGKYKS-VY-VGEETNITLNDLKPAM   93 (137)
T ss_dssp             TTCCCCCEEES-CCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCT-TSCCEE-EE-EESCSEEEECSCCTTC
T ss_pred             CCCCCCCEEEE-eEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCC-CccEEE-EE-ecCccEEEECCCCCCc
Confidence            44555566766 889999999998543211       0135678887654433 223332 23 4567789999999999


Q ss_pred             ceeEEEEEecCCCCCCCCcceEEeCCCCCCCCCCcee
Q psy11701        475 KNFARVLAFNGAYNGPPSEIISFVTPEGVPGTVQSLE  511 (745)
Q Consensus       475 ~Y~~~V~a~n~~G~g~~S~~~~~~t~~~~P~~p~~~~  511 (745)
                      .|.|+|+|.|..|.|.+|..+.++|...+|.+|.-.+
T Consensus        94 ~Y~f~V~A~n~~G~g~~S~~~~~~T~~~~P~~p~~p~  130 (137)
T d1wk0a_          94 DYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPR  130 (137)
T ss_dssp             EECEEEEEEETTEECCCCCCCCEECCCSSSCCCSCSC
T ss_pred             EEEEEEEEEcCCcccCCCCCEEEECCCCCCCCCCCCE
Confidence            9999999999999999999999999988887654443

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=9.3e-10  Score=83.72  Aligned_cols=82  Identities=20%  Similarity=0.371  Sum_probs=67.5

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      .+|.++++.. .+.+++.|+|+++.     +.+.+|+|.|+...... ......+ .....++.|.+|.|++.|.|+|.|
T Consensus         2 d~P~~l~v~~-vt~~sv~l~W~~p~-----~~~~~Y~i~~~~~~~~~-~~~~~~v-~~~~~~~~i~~L~p~t~Y~~~V~a   73 (89)
T d1fnfa3           2 DSPTGIDFSD-ITANSFTVHWIAPR-----ATITGYRIRHHPEHFSG-RPREDRV-PHSRNSITLTNLTPGTEYVVSIVA   73 (89)
T ss_dssp             CCCEEEEEES-CCSSEEEEEEECCS-----SCCSEEEEEEECSCCSS-CCEEEEE-ETTCCEEEEESCCTTCEEEEEEEE
T ss_pred             ccCcCCEEEE-ecCCEEEEEEEeCC-----CEEeeEEEEEEECCCCC-ceEEEEE-CCCccEEEECCCcccCEEEEEEEE
Confidence            5789999988 89999999999852     45789999988765543 3344555 677889999999999999999999


Q ss_pred             ecCCCCCCCC
Q psy11701        483 FNGAYNGPPS  492 (745)
Q Consensus       483 ~n~~G~g~~S  492 (745)
                      +|..|.|++.
T Consensus        74 ~~~~g~s~p~   83 (89)
T d1fnfa3          74 LNGREESPLL   83 (89)
T ss_dssp             EETTEECCCE
T ss_pred             EcCCcCcCCE
Confidence            9999987664

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.2e-09  Score=86.05  Aligned_cols=82  Identities=16%  Similarity=0.250  Sum_probs=60.2

Q ss_pred             CcceeEEEeecCccccC--CCcceEEEEEeccCCCCCCCccCccccccceEEeccCCCcceEEEEEEEEeeeecCCCCeE
Q psy11701        615 PNNLVISWTAMPEIEHN--APHFKYRIFWRRHNTGEAWNQDDVLDWRQSELVLANQPTFQPYEIKVVQTWTEKDGEGSIR  692 (745)
Q Consensus       615 p~~~~v~W~~~~~~~~~--g~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~i~v~a~~~~~~~~~~~~  692 (745)
                      .++|.|+|++|......  +.+..|.|+|+..++. .|                                          
T Consensus        20 ~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~-~w------------------------------------------   56 (106)
T d1axib2          20 HADIQVRWEAPRNADIQKGWMVLEYELQYKEVNET-KW------------------------------------------   56 (106)
T ss_dssp             EEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCS-SC------------------------------------------
T ss_pred             cCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCc-cc------------------------------------------
Confidence            46789999977654332  3567899998865322 11                                          


Q ss_pred             EEEEecCCCcEEEecccccCCcceeEEEEecCcc--cCCCCcceEEeCCC
Q psy11701        693 ELIVNKGESTTTEVDKFVPASKNFARVLAFNGAY--NGPPSEIISFVTPE  740 (745)
Q Consensus       693 ~~~~~~~~~~~~~i~~L~p~~~Y~~~v~A~~~~G--~g~~s~~~~~~t~~  740 (745)
                       ..+.....+.+.|.+|++++.|.|+|+|.+.+|  .|+||+++.++||+
T Consensus        57 -~~~~~~~~~~~~i~~L~~~t~Y~frVRa~~~~~g~ws~wS~~v~v~~P~  105 (106)
T d1axib2          57 -KMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLPQ  105 (106)
T ss_dssp             -EECCCBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCEEECCCC
T ss_pred             -eeeeecccceEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCC
Confidence             111134567889999999999999999998665  39999999999986

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.1e-10  Score=87.29  Aligned_cols=78  Identities=21%  Similarity=0.267  Sum_probs=60.4

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCC------------CCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINP------------SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      +++....|++|+|.|... .|.+.|.|++++..+..            ..+..+...+++|+|.+++.+|+|.|+|.+.+
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            567889999999999864 67889999999877631            23455555667899999999999999999977


Q ss_pred             CCeeeEEEEEEEEE
Q psy11701        109 GVGEAKSYSIDLSV  122 (745)
Q Consensus       109 ~~g~~~~~~~~l~V  122 (745)
                      ..+..   .+.|+|
T Consensus        82 ~~~t~---~~~l~V   92 (93)
T d1ccza1          82 ITDTM---KFFLYV   92 (93)
T ss_dssp             CCSCE---EEEEEE
T ss_pred             CCcEE---EEEEEE
Confidence            65543   356655

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.5e-09  Score=83.77  Aligned_cols=83  Identities=16%  Similarity=0.297  Sum_probs=67.4

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEe
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAF  483 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~  483 (745)
                      +|.++++.. .+.+++.|.|+++.    ++.+.+|.|+|+..+.. .......+ .....+++|.+|.|++.|.|+|.|.
T Consensus         8 ~P~~l~v~~-~t~~si~l~W~~p~----~~~i~~Y~v~~~~~~~~-~~~~~~~~-~~~~t~~~i~~L~p~t~Y~~~V~a~   80 (95)
T d2fnba_           8 QLTDLSFVD-ITDSSIGLRWTPLN----SSTIIGYRITVVAAGEG-IPIFEDFV-DSSVGYYTVTGLEPGIDYDISVITL   80 (95)
T ss_dssp             CCTTCEEEC-CCSSCEEEECCCCC----CSSCCEEEEEEEEETSC-CEEEEEEC-CSSCSEEEECCCCTTSEEEEEEEEE
T ss_pred             cCCCeEEEE-EcCCEEEEEEEecC----CceEEeEEEEEEEeecc-ceEEEEEe-CCCCeEEEEecccCCEEEEEEEEEE
Confidence            688999988 89999999999853    34588999998877553 22333344 6677899999999999999999999


Q ss_pred             cCCCCCCCCc
Q psy11701        484 NGAYNGPPSE  493 (745)
Q Consensus       484 n~~G~g~~S~  493 (745)
                      |..|.|.++.
T Consensus        81 ~~~g~s~p~~   90 (95)
T d2fnba_          81 INGGESAPTT   90 (95)
T ss_dssp             ETTEECCCCE
T ss_pred             eCCcEeCCEE
Confidence            9999988774

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.95  E-value=1.3e-09  Score=82.56  Aligned_cols=81  Identities=23%  Similarity=0.417  Sum_probs=67.4

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      ++|.++++.. .+.+++.|+|+++.     +.+.+|.|+|+......  +..... ......++|.+|.|++.|.|+|.|
T Consensus         2 ~~P~~l~v~~-v~~~s~~l~W~~~~-----~~~~~Y~i~~~~~~~~~--~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a   72 (88)
T d1qr4a2           2 GSPKGISFSD-ITENSATVSWTPPR-----SRVDSYRVSYVPITGGT--PNVVTV-DGSKTRTKLVKLVPGVDYNVNIIS   72 (88)
T ss_dssp             CCCSCEEEES-CCSSCEEEEECCCS-----SCCSEEEEEEEETTCCC--CEEEEE-ETTCCEEEECSCCSSCEEEEEEEE
T ss_pred             cCCcceEEEE-ecCCEEEEEEEccc-----EeeceEEEEEEeccCCc--eEEEEe-cCCccEEEECCCCCCCEEEEEEEE
Confidence            5789999988 89999999999842     46889999998876643  344455 567789999999999999999999


Q ss_pred             ecCCCCCCCC
Q psy11701        483 FNGAYNGPPS  492 (745)
Q Consensus       483 ~n~~G~g~~S  492 (745)
                      +|..|.|++.
T Consensus        73 ~~~~g~s~p~   82 (88)
T d1qr4a2          73 VKGFEESEPI   82 (88)
T ss_dssp             EETTEECCCE
T ss_pred             EeCCCCcCCE
Confidence            9999988764

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.6e-10  Score=86.44  Aligned_cols=88  Identities=10%  Similarity=0.058  Sum_probs=62.1

Q ss_pred             CCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEE
Q psy11701        504 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLA  583 (745)
Q Consensus       504 P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  583 (745)
                      | +|.++++...+... +|+|++|...+|.+  |.+++...+...+..+.. .... ......+.+.+|.++..|.|||+
T Consensus         2 P-~P~nv~v~s~n~~~-~L~W~pP~~~g~~~--~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~Y~fRV~   75 (98)
T d1fyhb1           2 P-TPTNVTIESYNMNP-IVYWEYQIMPQVPV--FTVEVKNYGVKNSEWIDA-CINI-SHHYCNISDHVGDPSNSLWVRVK   75 (98)
T ss_dssp             C-CCEEEEEECBSSCC-EEEEECCCCSSCCE--EEEEEEETTCSSSCCEEE-EEEE-SSSEEECGGGCCSTTSCEEEEEE
T ss_pred             c-cCCceEEEEeCCcE-EEEECCCCCCCCCc--eeEEEEEeccccceeEEe-eeec-ccceeeeEecccCCCCEEEEEEE
Confidence            5 68899998876655 59999998877766  444444444333322211 1111 44557788999999999999999


Q ss_pred             EEecCCCCCCccee
Q psy11701        584 GYTKAGDGAESKYL  597 (745)
Q Consensus       584 a~n~~G~g~~S~~~  597 (745)
                      |+|..|.|++++..
T Consensus        76 A~n~~g~S~ws~s~   89 (98)
T d1fyhb1          76 ARVGQKESAYAKSE   89 (98)
T ss_dssp             EEETTEECCCEECC
T ss_pred             EEcCCcccCCccCC
Confidence            99999999997644

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=3e-09  Score=81.51  Aligned_cols=89  Identities=17%  Similarity=0.266  Sum_probs=72.0

Q ss_pred             CCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEE
Q psy11701        402 LEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVL  481 (745)
Q Consensus       402 p~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~  481 (745)
                      +.+|.++.+.. .+.+++.|+|+++     ++.+.+|.|.|+..... .......+ ......+++.+|.|++.|.|+|.
T Consensus         4 ~~~P~~l~v~~-v~~~si~v~W~~p-----~~~~~~y~i~~~~~~~~-~~~~~~~~-~~~~~~~~i~~L~p~t~Y~v~V~   75 (93)
T d1tdqa1           4 IDGPTQILVRD-VSDTVAFVEWTPP-----RAKVDFILLKYGLVGGE-GGKTTFRL-QPPLSQYSVQALRPGSRYEVSIS   75 (93)
T ss_dssp             SCCCEEEEEEE-ECSSCEEEEEECC-----SSCCSEEEEEEEESSSS-CCCEEEEE-CTTCSEEEECSCCTTCEEEEEEE
T ss_pred             CCcCCCCEEEE-eCCCEEEEEEEcc-----ccCCCceEEEEEeccCc-ceeeEEEe-CCCceEEEEeCcccceEEEEEEE
Confidence            46899999988 8999999999974     24678999988876653 33344555 67788999999999999999999


Q ss_pred             EecCCCCCCCCcceEEeC
Q psy11701        482 AFNGAYNGPPSEIISFVT  499 (745)
Q Consensus       482 a~n~~G~g~~S~~~~~~t  499 (745)
                      |+|..|.|.++. ..++|
T Consensus        76 a~~~~g~s~~~~-~~~tT   92 (93)
T d1tdqa1          76 AVRGTNESDASS-TQFTT   92 (93)
T ss_dssp             EEETTEECCCEE-EEEEC
T ss_pred             EEeCCCCcCCEE-EEEEC
Confidence            999999998764 55655

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1e-09  Score=85.72  Aligned_cols=86  Identities=21%  Similarity=0.244  Sum_probs=57.1

Q ss_pred             CCceeEEEcCCceEEEEeeCCCCCCC-ceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEEEEEE
Q psy11701        507 VQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGY  585 (745)
Q Consensus       507 p~~~~~~~~~~~~i~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~  585 (745)
                      |++|.+.. +.+++.|+|.+|...++ .+..|.|+|+........ ...    ......+.++|.+|.|++.|.|||+|.
T Consensus         8 Pp~l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~-~~~----~~~~~~~~~~l~~L~p~t~Y~~rVRa~   81 (100)
T d2gysa4           8 PPSLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKD-SKT----ETLQNAHSMALPALEPSTRYWARVRVR   81 (100)
T ss_dssp             CCEEEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTT-SCE----EEEESCSEEECCCCCSSCCCEEEEEEE
T ss_pred             CCccEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccceec-eee----cccCCceEEEeCCCCCCCeEEEEEEEE
Confidence            34787765 55789999999976544 577999999876544222 221    113456789999999999999999999


Q ss_pred             ecCCC--CCCcceee
Q psy11701        586 TKAGD--GAESKYLF  598 (745)
Q Consensus       586 n~~G~--g~~S~~~~  598 (745)
                      +..|.  |.+|+++.
T Consensus        82 ~~~g~~~g~WSeWS~   96 (100)
T d2gysa4          82 TSRTGYNGIWSEWSE   96 (100)
T ss_dssp             ECCTTCCBCCCCCCC
T ss_pred             ECCCCCCCCccCCCC
Confidence            88774  77777653

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.1e-09  Score=80.35  Aligned_cols=80  Identities=18%  Similarity=0.360  Sum_probs=65.4

Q ss_pred             CCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEecC
Q psy11701        406 SNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAFNG  485 (745)
Q Consensus       406 ~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~n~  485 (745)
                      +++++.. .+.+++.|.|+++.     +.+.+|.|+|+..... .......+ ..+..+++|.+|.|++.|.|+|.|+|.
T Consensus         1 rnl~v~~-~t~~sv~l~W~~p~-----~~~~~Y~v~~~~~~~~-~~~~~~~~-~~~~t~~~l~~L~p~t~Y~~~V~a~~~   72 (91)
T d1fnaa_           1 RDLEVVA-ATPTSLLISWDAPA-----VTVRYYRITYGETGGN-SPVQEFTV-PGSKSTATISGLKPGVDYTITVYAVTG   72 (91)
T ss_dssp             CCCEEEE-ECSSCEEEECCCCS-----SCCSEEEEEEEETTCC-SCCEEEEE-ETTCCEEEECSCCTTCEEEEEEEEECT
T ss_pred             CCCEEEE-eCCCEEEEEEEccc-----eEecEEEEEEEcCCCC-ceeEEEEe-CCCccEEEeCCCCCCCEEEEEEEEEeC
Confidence            4788888 89999999999852     4578999998876543 33444556 677889999999999999999999999


Q ss_pred             CCCCCCCc
Q psy11701        486 AYNGPPSE  493 (745)
Q Consensus       486 ~G~g~~S~  493 (745)
                      .|.|+++.
T Consensus        73 ~g~s~~~s   80 (91)
T d1fnaa_          73 RGDSPASS   80 (91)
T ss_dssp             TCCSSCSC
T ss_pred             CccCCCcC
Confidence            99997764

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.6e-09  Score=81.28  Aligned_cols=87  Identities=13%  Similarity=0.243  Sum_probs=69.6

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      .||.++++.. .+..++.|.|.++.     +.+.+|.|+|+....  .......+ ......+.|.+|.|++.|.|+|.|
T Consensus         3 spP~~l~v~~-~~~~si~v~W~~p~-----~~~~~Y~i~~~~~~~--~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a   73 (90)
T d1fnha2           3 SPPRRARVTD-ATETTITISWRTKT-----ETITGFQVDAVPANG--QTPIQRTI-KPDVRSYTITGLQPGTDYKIYLYT   73 (90)
T ss_dssp             CCCEEEEEEE-ECSSEEEEEEECCS-----SCCCCEEEEEEESSS--SCCEEEEC-CTTCSEEEEESCCTTCEEEEEEEE
T ss_pred             CcCCCCEEEE-ecCCEEEEEEECCC-----CCCceeEEEEEEccC--CceEEEec-CCCccEEEeCCCCCCcEEEEEEEE
Confidence            5789999988 99999999999742     468899999987654  23344555 677889999999999999999999


Q ss_pred             ecCCCCCCCCcceEEeC
Q psy11701        483 FNGAYNGPPSEIISFVT  499 (745)
Q Consensus       483 ~n~~G~g~~S~~~~~~t  499 (745)
                      .|..|.|.+.. +.++|
T Consensus        74 ~~~~g~s~p~~-~~~~T   89 (90)
T d1fnha2          74 LNDNARSSPVV-IDAST   89 (90)
T ss_dssp             EETTEECCCEE-EEEEC
T ss_pred             EeCCCCcCCEE-EEEEC
Confidence            99999987544 44444

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3e-09  Score=81.07  Aligned_cols=88  Identities=20%  Similarity=0.401  Sum_probs=69.9

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEe
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAF  483 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~  483 (745)
                      +|.++.+.. .+.+++.|.|.++.     +.+.+|.++|...... .......+ ......++|.+|.|++.|.|+|+|.
T Consensus         2 pP~~l~~~~-v~~~si~l~W~~p~-----~~~~~~~i~~~~~~~~-~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~   73 (90)
T d1fnha1           2 APTDLKFTQ-VTPTSLSAQWTPPN-----VQLTGYRVRVTPKEKT-GPMKEINL-APDSSSVVVSGLMVATKYEVSVYAL   73 (90)
T ss_dssp             CCEEEEEEE-ECSSCEEEEEECCS-----SCCSEEEEEEEESSSC-SCCCEEEE-CTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCEEEEE-ecCCEEEEEEEccc-----eeccceEEEEEeeeCC-CceEEEEe-CCCCeEEEEecccCceEEEEEEEEE
Confidence            588999988 99999999999852     3467888877666543 33444455 6778899999999999999999999


Q ss_pred             cCCCCCCCCcceEEeCC
Q psy11701        484 NGAYNGPPSEIISFVTP  500 (745)
Q Consensus       484 n~~G~g~~S~~~~~~t~  500 (745)
                      |..|.|+++. ..++|.
T Consensus        74 n~~g~s~~~~-~~~~T~   89 (90)
T d1fnha1          74 KDTLTSRPAQ-GVVTTL   89 (90)
T ss_dssp             ETTEECCCEE-EEEECC
T ss_pred             eCCCCcCCEe-EEEEcC
Confidence            9999998875 446654

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.4e-09  Score=81.83  Aligned_cols=82  Identities=15%  Similarity=0.312  Sum_probs=67.2

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEEe
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLAF  483 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a~  483 (745)
                      +|.++++.. .+.+++.|.|+++.    ++.+.+|.|.|+..... .......+ ......++|.+|.|++.|.|+|.|.
T Consensus         3 pP~~l~~~~-~~~~sv~l~W~~p~----~~~~~~y~v~y~~~~~~-~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~   75 (91)
T d1fnfa2           3 PPTDLRFTN-IGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNE-EDVAELSI-SPSDNAVVLTNLLPGTEYVVSVSSV   75 (91)
T ss_dssp             CCEEEEEES-CCSSCEEEEEECCT----TCCCSEEEEEEEETTCT-TCCEEEEE-CTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             cCCceEEEE-eCCCEEEEEEEecC----CCCcceeEEEEEECCCC-ccEEEEEe-CCCceEEEEeceeCCCEEEEEEEEE
Confidence            688999987 89999999999853    35688999999876653 34455666 6778899999999999999999999


Q ss_pred             cCCCCCCCC
Q psy11701        484 NGAYNGPPS  492 (745)
Q Consensus       484 n~~G~g~~S  492 (745)
                      |..|.|.+.
T Consensus        76 ~~~g~S~p~   84 (91)
T d1fnfa2          76 YEQHESTPL   84 (91)
T ss_dssp             ETTEECCCE
T ss_pred             cCCCCCCCE
Confidence            999987653

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.1e-09  Score=82.17  Aligned_cols=87  Identities=14%  Similarity=0.113  Sum_probs=60.7

Q ss_pred             CCCCCCceeEEEcC-CceEEEEeeCCCCC----CCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCcc
Q psy11701        503 VPGTVQSLEAIPLG-SSAFYLKWVKPEQP----NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK  577 (745)
Q Consensus       503 ~P~~p~~~~~~~~~-~~~i~l~W~~p~~~----~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~  577 (745)
                      .|.||.++++.... ...+.|+|.+|...    +.....|.|+|+..+...+.....          ...++.+|.|++.
T Consensus         1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~----------~~~t~~~L~p~~~   70 (94)
T d3d85d3           1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVF----------TDKTSATVICRKN   70 (94)
T ss_dssp             CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEE----------ESSSEEEECCCSS
T ss_pred             CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEecc----------ccceEEEecCCCC
Confidence            48899999998764 46699999998642    334789999999876554433221          1223346899999


Q ss_pred             EEEEEEEEecCCCCCCcceeee
Q psy11701        578 YRIHLAGYTKAGDGAESKYLFY  599 (745)
Q Consensus       578 Y~~~V~a~n~~G~g~~S~~~~~  599 (745)
                      |.|+|+|.+..|.|.+|+++..
T Consensus        71 Y~v~VRa~~~~~~g~WSeWS~~   92 (94)
T d3d85d3          71 ASISVRAQDRYYSSSWSEWASV   92 (94)
T ss_dssp             CEEEEEEEESSSCCCCCCCEEE
T ss_pred             EEEEEEEecCCCCCCCccCcCC
Confidence            9999999999999999988753

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5.2e-10  Score=87.85  Aligned_cols=85  Identities=12%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             ecCceeEeeCCCeEEEEEEEee-cC--CCeEEEEeCCEeccCCCCCCceee---cCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        130 VEPEFINAAEEETVTFECKASG-LP--EPEIHWVHNGKPISQAPPNPRRKV---GPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~-~p--~~~v~W~~~g~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ..+....+.+|+.++|.|.+.| .|  .++++|+|+|+.+...........   ....|.|.....+|+|.|+|+|.|..
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            3445557889999999999986 44  458999999999864322211111   12357777778888889999999987


Q ss_pred             ceEEEEEEEEE
Q psy11701        204 GYVYKDVYVNV  214 (745)
Q Consensus       204 g~~~~~~~l~v  214 (745)
                      +.....+.+.+
T Consensus        87 ~~~~~~~~~~~   97 (106)
T d1zxqa1          87 MSRGGNIFHKH   97 (106)
T ss_dssp             GGGTCCEEEEE
T ss_pred             CCCCCeeEecc
Confidence            65433344443

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.2e-09  Score=84.23  Aligned_cols=91  Identities=18%  Similarity=0.063  Sum_probs=68.2

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .||.+|.++++.. .+..++.|.|.++..   ++..++|.|.|+....... ...... ......+.+.+|.+++.|.|+
T Consensus         2 ~PP~~P~n~~~~~-~~~~si~~~W~p~~~---~~~~~~y~v~~~~~~~~~~-~~~~~~-~~~~~~~~~~~L~~~~~Y~f~   75 (95)
T d1bqua1           2 LPPEKPKNLSCIV-NEGKKMRCEWDGGRE---THLETNFTLKSEWATHKFA-DCKAKR-DTPTSCTVDYSTVYFVNIEVW   75 (95)
T ss_dssp             CCCCCCEEEEEEE-ETTSCCEEEEECCSC---CSSCCEEEEEEEETTEECC-CEECCS-SCTTEEECSSCCCTTSCEEEE
T ss_pred             cCcCCCeeeEEEE-ccCCEEEEEEeCccc---CCCceEEEEEEEEccccee-Eeeccc-ccceeeeeeeecCCCcEEEEE
Confidence            4899999999998 889999999998532   3445799998877654322 222222 455667888899999999999


Q ss_pred             EEEecCCCCCCCCcceEE
Q psy11701        480 VLAFNGAYNGPPSEIISF  497 (745)
Q Consensus       480 V~a~n~~G~g~~S~~~~~  497 (745)
                      |.|.|.+|.+. |..+.+
T Consensus        76 V~A~N~~G~s~-S~~v~~   92 (95)
T d1bqua1          76 VEAENALGKVT-SDHINF   92 (95)
T ss_dssp             EEEEETTEEEE-CCCEEE
T ss_pred             EEEEeCCcccc-CCCeec
Confidence            99999999886 444433

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=4.5e-09  Score=79.06  Aligned_cols=81  Identities=15%  Similarity=0.275  Sum_probs=66.1

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      .+|.++++.. .+.+++.|.|+++.     +.+.+|.|.|...+.   ......+ ......+.|.+|.|++.|.|+|.|
T Consensus         2 ~~P~nl~v~~-~~~~s~~l~W~~p~-----~~~~~Y~v~~~~~~~---~~~~~~~-~~~~~~~~~~~L~p~t~Y~v~V~a   71 (86)
T d1tdqa3           2 DSPRDLMVTA-SSETSISLIWTKAS-----GPIDHYRITFTPSSG---ISSEVTV-PRDRTSYTLTDLEPGAEYIISITA   71 (86)
T ss_dssp             CCCEEEEEEE-ECSSCEEEEEECCC-----SCCSEEEEEEECSSS---CCEEEEE-ESSCSEEEECCCCTTCCEEEEEEE
T ss_pred             ccCCCCEEEE-ecCCEEEEEEeCCC-----CCccceEEEEecccc---cceEEEe-CCCccEEEECCCccccEEEEEEEE
Confidence            5788999988 89999999999852     457899998876543   2333455 567889999999999999999999


Q ss_pred             ecCCCCCCCCc
Q psy11701        483 FNGAYNGPPSE  493 (745)
Q Consensus       483 ~n~~G~g~~S~  493 (745)
                      .|..|.|.++.
T Consensus        72 ~~~~~~s~p~~   82 (86)
T d1tdqa3          72 ERGRQQSLEST   82 (86)
T ss_dssp             EETTEECCCEE
T ss_pred             EcCCCEECCEE
Confidence            99999887754

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.5e-09  Score=80.82  Aligned_cols=88  Identities=20%  Similarity=0.370  Sum_probs=67.3

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      .+|.++++.. .+.+++.|.|+++.     +.+.+|.+.|+.......  ............+++.+|.|++.|.|+|.|
T Consensus         3 d~P~~l~v~~-vt~~sv~l~W~~p~-----~~~~~y~i~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   74 (94)
T d1j8ka_           3 DRPKGLAFTD-VDVDSIKIAWESPQ-----GQVSRYRVTYSSPEDGIH--ELFPAPDGEEDTAELQGLRPGSEYTVSVVA   74 (94)
T ss_dssp             CCCCCCEEEE-EETTEEEEECCCCS-----SCCSCEEEEEEETTTEEE--EECCCCCSSCCEEEECSCCCCSEEEEEEEE
T ss_pred             CCCCCCEEEE-ecCCEEEEEEeCCC-----ccccceEEEEEeecCCCc--eEEEecCCCccEEEECCCCCCCEEEEEEEE
Confidence            5789999988 89999999999852     457789998877654321  111122567789999999999999999999


Q ss_pred             ecCCCCCCCCcceEEeC
Q psy11701        483 FNGAYNGPPSEIISFVT  499 (745)
Q Consensus       483 ~n~~G~g~~S~~~~~~t  499 (745)
                      +|..|.|.+.. ..++|
T Consensus        75 ~~~~g~S~p~~-~~~~T   90 (94)
T d1j8ka_          75 LHDDMESQPLI-GTQST   90 (94)
T ss_dssp             CSSSCCCCCEE-EEEEC
T ss_pred             EeCCCCcCCEE-EEEEE
Confidence            99999887754 33444

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.7e-09  Score=78.68  Aligned_cols=78  Identities=21%  Similarity=0.095  Sum_probs=62.0

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARV  480 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V  480 (745)
                      .|.+|.++++.. .+.+++.|+|+++..    +.+..|.|+|+.....  .+....  ......+++.+|.|++.|.|+|
T Consensus         2 ~P~~P~nl~v~~-~~~~~v~l~W~~p~~----~~~~~y~v~y~~~~~~--~~~~~~--~~~~~~~~~~~L~p~t~Y~frV   72 (95)
T d2b5ic1           2 IPWAPENLTLHK-LSESQLELNWNNRFL----NHCLEHLVQYRTDWDH--SWTEQS--VDYRHKFSLPSVDGQKRYTFRV   72 (95)
T ss_dssp             ECCCCEEEEEEE-EETTEEEEEEECSSC----STTCEEEEEEEETTCS--SCEEEE--ECSSCEEEECSCCTTSCEEEEE
T ss_pred             CCcCCCCCEEEE-EeCCEEEEEECCCCC----ceeEEEEEEEEcCCCc--eeeEee--ecccceeEcCCCCCCCEEEEEE
Confidence            489999999988 889999999998532    3467899999887653  333333  3456789999999999999999


Q ss_pred             EEecCCC
Q psy11701        481 LAFNGAY  487 (745)
Q Consensus       481 ~a~n~~G  487 (745)
                      +|.+..+
T Consensus        73 Ra~~~~~   79 (95)
T d2b5ic1          73 RSRFNPL   79 (95)
T ss_dssp             EEECCSS
T ss_pred             EEeeCCC
Confidence            9986554

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.7e-08  Score=79.33  Aligned_cols=97  Identities=18%  Similarity=0.211  Sum_probs=70.4

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      +.+.||.++.+........+.+.|.++. ....+.+..|.|+|+..+... ....... ......+.|.+|.+++.|.|+
T Consensus         3 Vk~dPP~nl~v~~~~~~~~l~v~W~~P~-~~~~~~~~~Y~v~y~~~~~~~-~~~~~~~-~~~~t~~~i~~L~p~t~Y~~r   79 (105)
T d1erna2           3 VLLDAPVGLVARLADESGHVVLRWLPPP-ETPMTSHIRYEVDVSAGNGAG-SVQRVEI-LEGRTECVLSNLRGRTRYTFA   79 (105)
T ss_dssp             BCCCCCEEEEEEECCC-CCEEEEEECSS-SCSCGGGEEEEEEEEEC-CCC-EEEEEEE-CTTCCEEEECSCCSSCEEEEE
T ss_pred             cccCCCCCCEEEEecCCCcEEEEeeecc-ccccceEEEEEEEEecCCCCC-ceEEEee-cCCccEEEEeCCCCCcEEEEE
Confidence            4578999999876334567999999854 445566789999998875533 3333444 556678999999999999999


Q ss_pred             EEEecC--CCC---CCCCcceEEeC
Q psy11701        480 VLAFNG--AYN---GPPSEIISFVT  499 (745)
Q Consensus       480 V~a~n~--~G~---g~~S~~~~~~t  499 (745)
                      |+|.+.  .|.   |++|.++.++|
T Consensus        80 VRar~~~~~~~G~WSeWS~~v~~~t  104 (105)
T d1erna2          80 VRARMAEPSFGGFWSAWSEPVSLLT  104 (105)
T ss_dssp             EEEEECSSSCCBCCCCCCCCEEEEC
T ss_pred             EEEEECCCCCCCCCCCCCCCEEeeC
Confidence            999854  333   46667777776

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.5e-09  Score=82.58  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=63.2

Q ss_pred             CCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEEEEE
Q psy11701        403 EAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       403 ~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      .+|.++++.. .+.+++.|+|+++.     +.+.+|.|+|+..+.... .....+ ......++|.+|.|++.|.|+|.|
T Consensus         2 daP~nl~v~~-~~~~s~~l~W~~p~-----~~i~~Y~i~~~~~~~~~~-~~~~~~-~~~~~~~~~~~L~p~t~Y~~~V~a   73 (89)
T d1fnha3           2 DAPSNLRFLA-TTPNSLLVSWQPPR-----ARITGYIIKYEKPGSPPR-EVVPRP-RPGVTEATITGLEPGTEYTIYVIA   73 (89)
T ss_dssp             CCCEEEEEEE-EETTEEEEEEECCS-----SCCSEEEEEEECTTSCCE-ECTTCC-CTTCCEEEEESCCTTCEEEEEEEE
T ss_pred             ccCcCCEEEE-ecCCEEEEEEeCCC-----cCCceEEEEEeeccCCcc-EEEEEc-CCCccEEEEEeeeCCCEEEEEEEE
Confidence            5788999988 89999999999852     458899999887554221 111122 456778999999999999999999


Q ss_pred             ecCCCCCCC
Q psy11701        483 FNGAYNGPP  491 (745)
Q Consensus       483 ~n~~G~g~~  491 (745)
                      +|..|.|.+
T Consensus        74 ~n~~g~S~p   82 (89)
T d1fnha3          74 LKNNQKSEP   82 (89)
T ss_dssp             ESSSCEEEE
T ss_pred             EcCCCEeCC
Confidence            999887654

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=2.3e-09  Score=83.95  Aligned_cols=79  Identities=18%  Similarity=0.192  Sum_probs=56.1

Q ss_pred             eeEecCCcEEEEEEEeecCCCeeEEEECCEecC-----------------C--CCCeEeccCCcEEEEccCCCCCCEEEE
Q psy11701         43 EVALRNKKVELFCIFGGTPLPQTIWSKDGVPIN-----------------P--SDRISQGNYGKSLIIKHVEFSDQGSYT  103 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~-----------------~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (745)
                      ..+.+|++|+|.|.........+.|+|......                 .  .+|..+.. +++|+|.+++.+|+|.|+
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~-ngSL~I~~v~~~D~G~Y~   87 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-NGSLLFQMITMKDMGVYT   87 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECT-TSCEEECSCCGGGCEEEE
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcc-cccEEEcCCCchhCEEEE
Confidence            346799999999985433355899998543211                 0  23556544 458999999999999999


Q ss_pred             EEEEeCCeeeEEEEEEEEE
Q psy11701        104 CEVSNGVGEAKSYSIDLSV  122 (745)
Q Consensus       104 C~~~~~~g~~~~~~~~l~V  122 (745)
                      |.+.+..+......+.|.|
T Consensus        88 c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          88 LDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEETTEEECCCCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9998876554445566655

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=2e-08  Score=82.14  Aligned_cols=86  Identities=23%  Similarity=0.282  Sum_probs=60.0

Q ss_pred             cceeEecCCcEEEEEEEeecC---CCeeEEEECCEec-----------C------CCCCeEec-----cCCcEEEEccCC
Q psy11701         41 KKEVALRNKKVELFCIFGGTP---LPQTIWSKDGVPI-----------N------PSDRISQG-----NYGKSLIIKHVE   95 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p---~~~v~W~~~~~~i-----------~------~~~~~~~~-----~~~~~L~i~~~~   95 (745)
                      ..+.+.+|++|+|.|......   ...|.|++.+...           .      -..+..+.     ....+|+|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            347889999999999985332   3368999864321           0      01223321     123589999999


Q ss_pred             CCCCEEEEEEEEeCCeeeEEEEEEEEEEecCe
Q psy11701         96 FSDQGSYTCEVSNGVGEAKSYSIDLSVLAAPY  127 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~p~  127 (745)
                      .+|+|.|+|.+.+..+... ..+.|.|..|+.
T Consensus        90 ~~D~G~Y~C~v~~~~~~~~-~~v~L~V~~P~~  120 (126)
T d1pkoa_          90 FSDEGGYTCFFRDHSYQEE-AAVELKVEDPFY  120 (126)
T ss_dssp             GGGCEEEEEEEEETTEEEE-EEEEEEEECTTT
T ss_pred             hhHCeEEEEEEEECCCEEE-EEEEEEEeCCCE
Confidence            9999999999998876654 678899987653

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=6.3e-09  Score=79.98  Aligned_cols=82  Identities=17%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             cceeEecCCcEEEEEEEeec--CCCeeEEEECCEecCC----------CCCeEeccCCcEEEEccCCCCCCEEEEEEEEe
Q psy11701         41 KKEVALRNKKVELFCIFGGT--PLPQTIWSKDGVPINP----------SDRISQGNYGKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~~~~i~~----------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      ..+....|++|+|.|.....  ....|.|+|++..|..          ..+.... .+++|+|.+++.+|+|.|+|.+.+
T Consensus         3 ~tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~-~ngSL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           3 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL-ANGDLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC-TTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             cEEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEEC-CCccEEEeCCCHHHCEEEEEEEEe
Confidence            34567789999999964222  2237999999887631          2233332 345799999999999999999999


Q ss_pred             CCeee-EEEEEEEEEE
Q psy11701        109 GVGEA-KSYSIDLSVL  123 (745)
Q Consensus       109 ~~g~~-~~~~~~l~V~  123 (745)
                      ..|.. .++.+.|.|.
T Consensus        82 ~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          82 TNGTRILNKALDLRIL   97 (98)
T ss_dssp             TTCCEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEE
Confidence            88865 3577888886

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.1e-09  Score=81.47  Aligned_cols=73  Identities=22%  Similarity=0.292  Sum_probs=54.5

Q ss_pred             eeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCC---------CCcee--ecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        134 FINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPP---------NPRRK--VGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~---------~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      ......|++++|.|... .|.+.+.|++++..+.....         ..+..  ..+++|+|.+++.+|+|.|+|.+.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            45678999999999765 47889999999877632111         11211  23568999999999999999999887


Q ss_pred             CceEE
Q psy11701        203 LGYVY  207 (745)
Q Consensus       203 ~g~~~  207 (745)
                      .+...
T Consensus        83 ~~t~~   87 (93)
T d1ccza1          83 TDTMK   87 (93)
T ss_dssp             CSCEE
T ss_pred             CcEEE
Confidence            66554

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8.4e-09  Score=80.57  Aligned_cols=91  Identities=12%  Similarity=0.187  Sum_probs=69.8

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCC-------CceeEEEEccCceeEEEecccccC
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGE-------GSIRELIVNKGESTTTEVDKFVPA  473 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~L~~~  473 (745)
                      .|.+|.++++.. .+.+++.|.|+++.     +.+.+|.|+|+......       .......+ .....+++|.+|+|+
T Consensus         3 ~Pp~~~~l~v~~-~t~~sv~v~W~pp~-----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~L~p~   75 (101)
T d2cuia1           3 SRPRLSQLSVTD-VTTSSLRLNWEAPP-----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMV-PGTRHSAVLRDLRSG   75 (101)
T ss_dssp             CCCCCCCCEEES-CCSSCEEEECCCCT-----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEE-ETTCCEEEECSCCTT
T ss_pred             CccCCCCcEEEE-ECCCEEEEEEEecc-----ccccceEEEEEecCCCceeeccCCcceeEeec-ccceeEEEeCCCCcC
Confidence            466778999988 89999999998742     45788999988765422       12233344 567889999999999


Q ss_pred             cceeEEEEEecCCCCCCCCcceEEeC
Q psy11701        474 SKNFARVLAFNGAYNGPPSEIISFVT  499 (745)
Q Consensus       474 ~~Y~~~V~a~n~~G~g~~S~~~~~~t  499 (745)
                      +.|.|+|+|+|..|.|.++. ..++|
T Consensus        76 t~Y~~~V~a~~~~g~g~~~~-~~~~T  100 (101)
T d2cuia1          76 TLYSLTLYGLRGPHKADSIQ-GTART  100 (101)
T ss_dssp             CEEEEEEEEECSSSEEEEEE-EEEEC
T ss_pred             CEEEEEEEEEeCCcEeCCeE-EEeEE
Confidence            99999999999999987653 44544

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.2e-08  Score=78.63  Aligned_cols=89  Identities=12%  Similarity=0.024  Sum_probs=63.3

Q ss_pred             CCCCCCCceeEEEcCCceEEEEeeCCCCCCCceeeEEEEEEEcCCcccCCcccccccccCCCcceeeecCCCCCccEEEE
Q psy11701        502 GVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH  581 (745)
Q Consensus       502 ~~P~~p~~~~~~~~~~~~i~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  581 (745)
                      ..|+ |+++++..... .+.|+|+||.+.++ ...|.|+|+..+...|..... ...+ ......+.+.+|.++..|.||
T Consensus         3 ~lP~-P~nv~~~s~n~-~~~L~W~pp~~~g~-~~~Y~Ve~~~~~~~~W~~v~~-c~~~-t~~~~~~~~~~l~~~~~Y~fR   77 (99)
T d1y6kr1           3 ELPS-PPSVWFEAEFF-HHILHWTPIPQQSE-STCYEVALLRYGIESWNSISQ-CSQT-LSYDLTAVTLDLYHSNGYRAR   77 (99)
T ss_dssp             CCCC-CSCEEEEEETT-EEEEEECCCTTCCT-TCEEEEEEEETTSCCCEEEEE-EESS-SEEECGGGGTTGGGSSCEEEE
T ss_pred             cCCC-CCcceEEEECC-EEEEEEcCCCCcCC-CCEEEEEEEECCCcceEEEEe-eccc-cccceeeeeeecCCCCEEEEE
Confidence            3454 66999877554 57799998887655 467999999877665544321 0001 112345678899999999999


Q ss_pred             EEEEecCCCCCCcc
Q psy11701        582 LAGYTKAGDGAESK  595 (745)
Q Consensus       582 V~a~n~~G~g~~S~  595 (745)
                      |+|.|..|.|.++.
T Consensus        78 VrA~n~~g~S~Ws~   91 (99)
T d1y6kr1          78 VRAVDGSRHSQWTV   91 (99)
T ss_dssp             EEEEETTEECCCEE
T ss_pred             EEEEcCCCcCCCcc
Confidence            99999999998854

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=3e-08  Score=78.20  Aligned_cols=94  Identities=12%  Similarity=0.149  Sum_probs=64.7

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCC--ceeE--EEE-ccCceeEEEecccccCc
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEG--SIRE--LIV-NKGESTTTEVDKFVPAS  474 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~--~~~~--~~~-~~~~~~~~~i~~L~~~~  474 (745)
                      .||.+|+++++......++++++|.++.  +.+.+ +.|.+.|+.......  ....  ... .......+++.+|.+++
T Consensus         3 ~PP~~P~~v~~i~~~~~~sv~~sW~p~~--d~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t   79 (107)
T d1cd9b1           3 YPPASPSNLSCLMHLTTNSLVCQWEPGP--ETHLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQ   79 (107)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCS--CCSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTS
T ss_pred             CccCCCcCCEEEEecCCCEEEEEEcCCC--CCCCC-cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCc
Confidence            5899999998654256789999999753  33344 567776665543211  1111  111 23466789999999999


Q ss_pred             ceeEEEEEecCCCCCCCCcceEE
Q psy11701        475 KNFARVLAFNGAYNGPPSEIISF  497 (745)
Q Consensus       475 ~Y~~~V~a~n~~G~g~~S~~~~~  497 (745)
                      .|.|+|.|.|..|.+. |..+.+
T Consensus        80 ~Y~frV~A~N~~G~s~-S~~~~~  101 (107)
T d1cd9b1          80 YMAIWVQAENMLGSSE-SPKLCL  101 (107)
T ss_dssp             CEEEEEEEEETTEEEE-CCCEEE
T ss_pred             eEEEEEEEEeCCcccc-CCCEEc
Confidence            9999999999999885 444544

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.9e-08  Score=75.72  Aligned_cols=95  Identities=11%  Similarity=0.063  Sum_probs=66.8

Q ss_pred             cCCCCCCceeEEe-ecCceeEEEEEeCCCC-CcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeE
Q psy11701        401 PLEAPSNFTLIQV-IDAKKAVVSWNPVSPQ-SLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA  478 (745)
Q Consensus       401 pp~~P~~~~~~~~-~~~~~v~l~W~~~~~~-~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~  478 (745)
                      .|.||.++++... .+.+++.|+|+++... ...+....|.+++.......  +..+.  ......++|.+|.+++.|.|
T Consensus         7 kP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~--~~~~~~~~i~~L~~~t~Y~~   82 (109)
T d1uc6a_           7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQ--WQHVE--LSNGTAHTITDAYAGKEYII   82 (109)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCC--CCCEE--ESSCSEEEETTCCSSSCEEE
T ss_pred             ECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCc--eEEec--cCCceeEEeCCCCCCCEEEE
Confidence            5789999988651 2467899999986432 33345678999887765543  22233  34667899999999999999


Q ss_pred             EEEEecCCCC--CCCCcceEEeC
Q psy11701        479 RVLAFNGAYN--GPPSEIISFVT  499 (745)
Q Consensus       479 ~V~a~n~~G~--g~~S~~~~~~t  499 (745)
                      +|+|.|..+.  |++|..+.++|
T Consensus        83 rVrA~~~~~g~wS~WS~~~~~tt  105 (109)
T d1uc6a_          83 QVAAKDNEIGTWSDWSVAAHATP  105 (109)
T ss_dssp             EEECCBSSSCCCCCCCEEEEECC
T ss_pred             EEEEEECCCCCcCCCCCCEEeEC
Confidence            9999886432  56666666654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=1.1e-07  Score=72.70  Aligned_cols=78  Identities=27%  Similarity=0.415  Sum_probs=59.4

Q ss_pred             eEEecCceEEEEEEEe-ecCC-CeEEEeeCCEEcc-----------CceEEEeecCcEEEcccCCCCCEEEEEEEEeCCc
Q psy11701        228 EYTVDGKTVVLTCRVF-GAPK-PEVNWIHNQKELT-----------GGRYTILETGDLKITDVAFADSGEYTCFARNKLG  294 (745)
Q Consensus       228 ~~v~~g~~~~l~C~~~-~~p~-~~i~W~~~~~~~~-----------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g  294 (745)
                      .....|++++|.|... .... ..|.|++++..+.           ..+.....+++|+|.+++.+|+|.|+|.+.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            3566899999999632 2222 3699999876552           3455666778999999999999999999999888


Q ss_pred             eE--EEEEEEEEe
Q psy11701        295 TA--QGSGSLTVK  305 (745)
Q Consensus       295 ~~--~~~~~l~v~  305 (745)
                      ..  .+.+.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            75  566777765

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=6.3e-08  Score=74.50  Aligned_cols=89  Identities=16%  Similarity=0.104  Sum_probs=57.3

Q ss_pred             CCeeEeeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCe---EeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         33 PKQQYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        33 p~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      |+..+.......|..|++|+|.|.+. .+...+.|+|+|.........   ........+.|.+++.+|+|.|+|...+.
T Consensus         6 pkPsLsa~P~~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~   84 (99)
T d1ucta1           6 PMPFISAKSSPVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   84 (99)
T ss_dssp             CCCCEEESSCSEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEecCCCceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence            33333333455799999999999875 455589999976422111111   11123346899999999999999999876


Q ss_pred             Ce-eeEEEEEEEEE
Q psy11701        110 VG-EAKSYSIDLSV  122 (745)
Q Consensus       110 ~g-~~~~~~~~l~V  122 (745)
                      .. ...+..+.|.|
T Consensus        85 ~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          85 HYRFRYSDTLELVV   98 (99)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CcccCCCCCEEEEe
Confidence            44 33445566655

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.5e-07  Score=72.90  Aligned_cols=88  Identities=13%  Similarity=0.222  Sum_probs=57.9

Q ss_pred             ccCCCCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeEE
Q psy11701        400 VPLEAPSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFAR  479 (745)
Q Consensus       400 ~pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~  479 (745)
                      .++.|| ++.+..  +..++.|.|.++... ....+..|.|+|+.............  ......++|.+|.|++.|.|+
T Consensus         4 Vk~~Pp-~l~v~~--~~~s~~l~W~~P~~~-~~~~~~~Y~v~y~~~~~~~~~~~~~~--~~~~~~~~l~~L~p~t~Y~~r   77 (100)
T d2gysa4           4 IQMAPP-SLQVTK--DGDSYSLRWETMKMR-YEHIDHTFEIQYRKDTATWKDSKTET--LQNAHSMALPALEPSTRYWAR   77 (100)
T ss_dssp             BCCCCC-EEEEC-----CCCEEEEEC---------CEEEEEEEECSSSCSTTSCEEE--EESCSEEECCCCCSSCCCEEE
T ss_pred             ccCCCC-ccEEEE--CCCEEEEEEecCccc-CCccceEEEEEEeecccceeceeecc--cCCceEEEeCCCCCCCeEEEE
Confidence            356667 777754  557899999985432 23346789999987665543333333  345678999999999999999


Q ss_pred             EEEecCCCC--CCCCc
Q psy11701        480 VLAFNGAYN--GPPSE  493 (745)
Q Consensus       480 V~a~n~~G~--g~~S~  493 (745)
                      |+|.+..|.  |.+|+
T Consensus        78 VRa~~~~g~~~g~WSe   93 (100)
T d2gysa4          78 VRVRTSRTGYNGIWSE   93 (100)
T ss_dssp             EEEEECCTTCCBCCCC
T ss_pred             EEEEECCCCCCCCccC
Confidence            999987764  55554

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=3.1e-07  Score=74.79  Aligned_cols=86  Identities=27%  Similarity=0.421  Sum_probs=61.5

Q ss_pred             CCceEEecCceEEEEEEEeecC---CCeEEEeeCCEEc------------------cCceEEEee------cCcEEEccc
Q psy11701        225 PKDEYTVDGKTVVLTCRVFGAP---KPEVNWIHNQKEL------------------TGGRYTILE------TGDLKITDV  277 (745)
Q Consensus       225 ~~~~~v~~g~~~~l~C~~~~~p---~~~i~W~~~~~~~------------------~~~~~~~~~------~~~l~i~~~  277 (745)
                      ...+.+..|++++|.|.+....   ...+.|++.+...                  ...+.....      +.+|.|.++
T Consensus         9 ~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   88 (126)
T d1pkoa_           9 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV   88 (126)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEE
Confidence            3346788999999999976432   2368999864321                  011222211      236999999


Q ss_pred             CCCCCEEEEEEEEeCCceEEEEEEEEEeeccee
Q psy11701        278 AFADSGEYTCFARNKLGTAQGSGSLTVKEHTHI  310 (745)
Q Consensus       278 ~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~p~~  310 (745)
                      +.+|+|.|.|.+.+..+..+..+.|.|.+|...
T Consensus        89 ~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          89 RFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW  121 (126)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEECTTTT
T ss_pred             chhHCeEEEEEEEECCCEEEEEEEEEEeCCCEE
Confidence            999999999999999888888899999876543

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1e-07  Score=72.46  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=59.0

Q ss_pred             cCCCCCCceeEEeecCceeEEEEEeCCCCCc--ceeeeeEEEEEEeccCCCCceeEEEEccCceeEEEecccccCcceeE
Q psy11701        401 PLEAPSNFTLIQVIDAKKAVVSWNPVSPQSL--RGHFRGYKVQTWTEKDGEGSIRELIVNKGESTTTEVDKFVPASKNFA  478 (745)
Q Consensus       401 pp~~P~~~~~~~~~~~~~v~l~W~~~~~~~~--~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~  478 (745)
                      .|.||.++++........+.|+|+++.....  +...+.|.|+|+..+....  .....     ...+...|.+++.|.|
T Consensus         1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~--~~~~~-----~~~t~~~L~p~~~Y~v   73 (94)
T d3d85d3           1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREK--KDRVF-----TDKTSATVICRKNASI   73 (94)
T ss_dssp             CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC--------CEEE-----ESSSEEEECCCSSCEE
T ss_pred             CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCcc--EEecc-----ccceEEEecCCCCEEE
Confidence            3789999999762345679999999754322  2336789999987654332  22222     1223356889999999


Q ss_pred             EEEEecCCCCCCCCcceEE
Q psy11701        479 RVLAFNGAYNGPPSEIISF  497 (745)
Q Consensus       479 ~V~a~n~~G~g~~S~~~~~  497 (745)
                      +|+|.+..|.|.+|....+
T Consensus        74 ~VRa~~~~~~g~WSeWS~~   92 (94)
T d3d85d3          74 SVRAQDRYYSSSWSEWASV   92 (94)
T ss_dssp             EEEEEESSSCCCCCCCEEE
T ss_pred             EEEEecCCCCCCCccCcCC
Confidence            9999999999999986554

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=7.6e-08  Score=75.02  Aligned_cols=79  Identities=15%  Similarity=0.148  Sum_probs=53.7

Q ss_pred             EeeCCCeEEEEEEEeecCCCeEEEEeCCEecc----------------CCCCCCcee-ecCceEEEccCCCCCCEEEEEE
Q psy11701        136 NAAEEETVTFECKASGLPEPEIHWVHNGKPIS----------------QAPPNPRRK-VGPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       136 ~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~----------------~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      .+.+|+++.|.|.........+.|+|+.....                ......|.. ..+++|.|.+++.+|+|.|+|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~   89 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD   89 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEE
Confidence            46799999999975443456899998543211                111222333 3578999999999999999999


Q ss_pred             EEeCCceE-EEEEEEEE
Q psy11701        199 ATNSLGYV-YKDVYVNV  214 (745)
Q Consensus       199 ~~~~~g~~-~~~~~l~v  214 (745)
                      +.+..+.. ...+.|.|
T Consensus        90 v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          90 MTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEETTEEECCCCEEECC
T ss_pred             EEECCCCEEEEEEEEEE
Confidence            98876543 23344443

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.9e-07  Score=70.69  Aligned_cols=82  Identities=16%  Similarity=0.130  Sum_probs=55.0

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeE-eccCCcEEEEccCCCCCCEEEEEEEEeCCe-eeEEEEE
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRIS-QGNYGKSLIIKHVEFSDQGSYTCEVSNGVG-EAKSYSI  118 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g-~~~~~~~  118 (745)
                      ....|..|++|+|.|... .....+.|+|+|.......+.. .......+.|.+++.+|+|.|+|...+..+ ...+..+
T Consensus        11 P~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~l   89 (95)
T d1olla1          11 PHFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL   89 (95)
T ss_dssp             SCSEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCE
T ss_pred             CCCcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCE
Confidence            355688999999999875 3455899999986532111111 011223699999999999999999876543 2334556


Q ss_pred             EEEEE
Q psy11701        119 DLSVL  123 (745)
Q Consensus       119 ~l~V~  123 (745)
                      +|.|.
T Consensus        90 eL~VT   94 (95)
T d1olla1          90 DLVVT   94 (95)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66664

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.7e-07  Score=69.84  Aligned_cols=78  Identities=21%  Similarity=0.383  Sum_probs=55.6

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +|.+...|.. .|..|++|+|.|.... ....+.|+|+|..................|.|.+++..|+|.|+|...+...
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            5777777765 4789999999998753 5568999999875432111111111224799999999999999999876544

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.3e-07  Score=73.15  Aligned_cols=82  Identities=23%  Similarity=0.356  Sum_probs=56.3

Q ss_pred             cceeEecCCcEEEEEEEeecCCC----eeEEEECCEe----------------cC-----CCCCeEecc-----CCcEEE
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLP----QTIWSKDGVP----------------IN-----PSDRISQGN-----YGKSLI   90 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~----~v~W~~~~~~----------------i~-----~~~~~~~~~-----~~~~L~   90 (745)
                      ..+.+.+|++++|.|.....+..    .+.|++....                ..     -.+|..+..     ...+|+
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            44678999999999998654322    5889872110                00     013444322     234799


Q ss_pred             EccCCCCCCEEEEEEEEeCCeeeEEEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVSNGVGEAKSYSIDLSVL  123 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~V~  123 (745)
                      |.+++.+|+|.|.|.+.+..+... ..+.|.|.
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~-~~~~L~V~  123 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVAN-KKIHLVVL  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEE-eEEEEEEE
Confidence            999999999999999998766544 66777774

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.39  E-value=4.8e-07  Score=70.18  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=50.7

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEe---cC---------CCCCeEecc--CCcEEEEccCCCCCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVP---IN---------PSDRISQGN--YGKSLIIKHVEFSDQ   99 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~---i~---------~~~~~~~~~--~~~~L~i~~~~~~d~   99 (745)
                      ++.+|+.+.+.+|++|+|.|...+.....+.|||.  +..   |-         ...++....  ....|.|.+++.+|+
T Consensus         3 vltQp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1lk3l1           3 VLTQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT   82 (106)
T ss_dssp             CEECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cEeeCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhC
Confidence            34456677899999999999997655567999972  211   10         123444322  234799999999999


Q ss_pred             EEEEEEEE
Q psy11701        100 GSYTCEVS  107 (745)
Q Consensus       100 G~Y~C~~~  107 (745)
                      |.|.|...
T Consensus        83 a~YyCa~~   90 (106)
T d1lk3l1          83 AIYFCQQS   90 (106)
T ss_dssp             EEEEEEEC
T ss_pred             CCcccccc
Confidence            99999764

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.2e-07  Score=69.18  Aligned_cols=80  Identities=10%  Similarity=0.126  Sum_probs=56.0

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCC--CCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAP--PNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .|.+...|.. .|..|++|+|.|.... +...+.|+|+|.......  ...........+.|.+++..|+|.|+|...+.
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~   84 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   84 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence            5777787765 5889999999998763 566899999764222110  01111223457999999999999999999887


Q ss_pred             CceE
Q psy11701        203 LGYV  206 (745)
Q Consensus       203 ~g~~  206 (745)
                      ....
T Consensus        85 ~~~S   88 (99)
T d1ucta1          85 HYRF   88 (99)
T ss_dssp             TTEE
T ss_pred             Cccc
Confidence            6543

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.6e-07  Score=71.24  Aligned_cols=86  Identities=14%  Similarity=0.037  Sum_probs=57.9

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeE-EEEccCceeEEEecccccCcceeEEEEE
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRE-LIVNKGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      +|.++++.. .+ ....|.|+++.  ..++....|.+  .........+.. ..........+++.+|.++..|.|||+|
T Consensus         3 ~P~nv~v~s-~n-~~~~L~W~pP~--~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A   76 (98)
T d1fyhb1           3 TPTNVTIES-YN-MNPIVYWEYQI--MPQVPVFTVEV--KNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKA   76 (98)
T ss_dssp             CCEEEEEEC-BS-SCCEEEEECCC--CSSCCEEEEEE--EETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEE
T ss_pred             cCCceEEEE-eC-CcEEEEECCCC--CCCCCceeEEE--EEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEE
Confidence            688999876 44 44579999853  23344444444  333333333322 2222556777889999999999999999


Q ss_pred             ecCCCCCCCCcce
Q psy11701        483 FNGAYNGPPSEII  495 (745)
Q Consensus       483 ~n~~G~g~~S~~~  495 (745)
                      .|..|.|+++..-
T Consensus        77 ~n~~g~S~ws~s~   89 (98)
T d1fyhb1          77 RVGQKESAYAKSE   89 (98)
T ss_dssp             EETTEECCCEECC
T ss_pred             EcCCcccCCccCC
Confidence            9999999887643

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=5.2e-07  Score=69.96  Aligned_cols=71  Identities=15%  Similarity=0.229  Sum_probs=50.7

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC------------CCCCeEecc--CCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN------------PSDRISQGN--YGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~------------~~~~~~~~~--~~~~L~i~~~~~~d~G~  101 (745)
                      ..|....+.+|++|+|.|...+.....+.|||  .|..+.            ...++....  ....|.|.+++.+|+|.
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence            34677789999999999998665555799998  222110            123454432  23489999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1ospl1          86 YFCQQYW   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEeecc
Confidence            9998753

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=7.9e-07  Score=71.39  Aligned_cols=88  Identities=25%  Similarity=0.395  Sum_probs=57.5

Q ss_pred             eEeeccceeEecCCcEEEEEEEeec----CCCeeEEEEC--CE----ec---------C-C----CCCeEec----cCCc
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGT----PLPQTIWSKD--GV----PI---------N-P----SDRISQG----NYGK   87 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~----p~~~v~W~~~--~~----~i---------~-~----~~~~~~~----~~~~   87 (745)
                      ++..|.++.+..|++|+|.|.....    ....+.|+|.  +.    .+         . .    .+|+.+.    ....
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDG   81 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBC
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEE
Confidence            4567888899999999999997422    2337999872  11    11         0 0    1344442    2234


Q ss_pred             EEEEccCCCCCCEEEEEEEEeCCe-eeEEEEEEEEEE
Q psy11701         88 SLIIKHVEFSDQGSYTCEVSNGVG-EAKSYSIDLSVL  123 (745)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~g-~~~~~~~~l~V~  123 (745)
                      +|.|.+++.+|+|.|.|.+.+..+ ......+.|.|.
T Consensus        82 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            799999999999999999986432 222345667664

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.34  E-value=4.6e-07  Score=69.97  Aligned_cols=71  Identities=17%  Similarity=0.282  Sum_probs=48.9

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------------CCCCeEe--ccCCcEEEEccCCCCCCEEE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------------PSDRISQ--GNYGKSLIIKHVEFSDQGSY  102 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------------~~~~~~~--~~~~~~L~i~~~~~~d~G~Y  102 (745)
                      +|..+.+.+|++|+|.|.........+.|||.  |..+.            ...++..  ......|.|.+++.+|+|.|
T Consensus         4 Qp~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           4 QPPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceE
Confidence            34567799999999999886554457899982  22111            0122222  23335799999999999999


Q ss_pred             EEEEEeC
Q psy11701        103 TCEVSNG  109 (745)
Q Consensus       103 ~C~~~~~  109 (745)
                      .|.+...
T Consensus        84 yCA~~~~   90 (103)
T d8faba1          84 YCQAWDN   90 (103)
T ss_dssp             EEEEEET
T ss_pred             EeeecCC
Confidence            9987643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.32  E-value=7.7e-07  Score=68.80  Aligned_cols=71  Identities=20%  Similarity=0.249  Sum_probs=50.6

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEec------------CCCCCeEec--cCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPI------------NPSDRISQG--NYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i------------~~~~~~~~~--~~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++|+|.|.........+.|||  .|+..            ....++...  ....+|.|.+++.+|+|.
T Consensus         6 QsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (106)
T d1i8ka_           6 QSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGD   85 (106)
T ss_dssp             EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEE
Confidence            44677889999999999998655555799997  23221            112344432  223479999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (106)
T d1i8ka_          86 YYCLQSF   92 (106)
T ss_dssp             EEEEECS
T ss_pred             EeEecCc
Confidence            9998753

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=2.5e-06  Score=68.03  Aligned_cols=72  Identities=22%  Similarity=0.266  Sum_probs=51.6

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC----------CC------------CCeEec---cCCcEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN----------PS------------DRISQG---NYGKSL   89 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~----------~~------------~~~~~~---~~~~~L   89 (745)
                      ...|....+.+|++|+|.|...+.....+.|+|  .|..+.          ..            .++...   ....+|
T Consensus         5 ~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L   84 (122)
T d1nezg_           5 RIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVL   84 (122)
T ss_dssp             EEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEE
T ss_pred             EEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEE
Confidence            456888899999999999999777777899997  222211          00            122211   112369


Q ss_pred             EEccCCCCCCEEEEEEEEe
Q psy11701         90 IIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~  108 (745)
                      +|.+++.+|+|.|.|.+..
T Consensus        85 ~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          85 TLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EESSCCGGGCEEEEEEEEE
T ss_pred             EEcccccCCCEEEEeeEeC
Confidence            9999999999999999864

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.6e-06  Score=66.97  Aligned_cols=71  Identities=20%  Similarity=0.266  Sum_probs=49.7

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEec------------CCCCCeEecc--CCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPI------------NPSDRISQGN--YGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i------------~~~~~~~~~~--~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++|+|.|.........+.|||.  ++.+            ....++....  ....|+|.+++.+|+|.
T Consensus         6 Q~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~   85 (108)
T d1jhll_           6 QSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAM   85 (108)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSE
T ss_pred             ccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceE
Confidence            457778899999999999987555557999972  2111            0112233222  22479999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+.+
T Consensus        86 YyCA~~~   92 (108)
T d1jhll_          86 YICQQHN   92 (108)
T ss_dssp             EEEEECS
T ss_pred             EEEeeCC
Confidence            9997654

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.3e-06  Score=67.90  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=50.3

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEe---c---------CCCCCeEe--ccCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVP---I---------NPSDRISQ--GNYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~---i---------~~~~~~~~--~~~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++|+|.|.........+.|||.  ++.   |         ....++..  ......|.|.+++.+|+|.
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~   85 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDAD   85 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCce
Confidence            446778899999999999986655557999972  211   1         01233332  2233479999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1kcvl1          86 YYCGQSY   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9998753

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=9e-07  Score=68.26  Aligned_cols=71  Identities=21%  Similarity=0.200  Sum_probs=50.4

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEec----C--------CCCCeEe--ccCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPI----N--------PSDRISQ--GNYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i----~--------~~~~~~~--~~~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++|+|.|.........+.|+|  .|+.+    .        ...++..  ......|.|.+++.+|+|.
T Consensus         6 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   85 (107)
T d1c5cl1           6 QSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFAD   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeE
Confidence            44677889999999999998766565799998  33221    0        1123322  2223489999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+.+
T Consensus        86 YyCa~~~   92 (107)
T d1c5cl1          86 YYCLQYA   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEecCc
Confidence            9998754

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=5.9e-07  Score=71.62  Aligned_cols=87  Identities=18%  Similarity=0.326  Sum_probs=55.7

Q ss_pred             eeccceeEecCCcEEEEEEEeec---CCCeeEEEECC--Eec----C--------CCCCeEec----cCCcEEEEccCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT---PLPQTIWSKDG--VPI----N--------PSDRISQG----NYGKSLIIKHVEF   96 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~---p~~~v~W~~~~--~~i----~--------~~~~~~~~----~~~~~L~i~~~~~   96 (745)
                      ..|+.+.+.+|++|+|.|.....   ....+.|+|..  ..+    .        ...++.+.    ....+|+|.+++.
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            46778889999999999987432   22357798732  111    0        11233221    1123799999999


Q ss_pred             CCCEEEEEEEEeCCeeeEEEEEEEEEEec
Q psy11701         97 SDQGSYTCEVSNGVGEAKSYSIDLSVLAA  125 (745)
Q Consensus        97 ~d~G~Y~C~~~~~~g~~~~~~~~l~V~~~  125 (745)
                      +|+|.|.|.+..... .....+.|.|...
T Consensus        84 ~DsG~Y~C~v~~~~~-~~~~~v~L~V~~~  111 (116)
T d1xeda_          84 DDSGRYKCGLGINSR-GLSFDVSLEVLEH  111 (116)
T ss_dssp             GGCEEEEEEESCGGG-CCEEEEEEEEECC
T ss_pred             CCCEEEEEEEEcCCC-CceEeEEEEEECC
Confidence            999999999864332 2235577777653

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=1.2e-06  Score=67.93  Aligned_cols=71  Identities=21%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------------CCCCeEec--cCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------------PSDRISQG--NYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------------~~~~~~~~--~~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++|+|.|.........+.|||.  |+.+.            -..++...  .....|.|.+++.+|+|.
T Consensus         6 Q~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1j1pl_           6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEE
Confidence            456778899999999999986554557999972  22210            12344432  223489999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+.+
T Consensus        86 YyCa~~~   92 (107)
T d1j1pl_          86 YFCQQAN   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEcCC
Confidence            9998753

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.9e-06  Score=69.78  Aligned_cols=82  Identities=29%  Similarity=0.474  Sum_probs=56.4

Q ss_pred             eeEeeCCCeEEEEEEEeecCC----CeEEEEeCCEe----------------cc--CCCCCCceee-------cCceEEE
Q psy11701        134 FINAAEEETVTFECKASGLPE----PEIHWVHNGKP----------------IS--QAPPNPRRKV-------GPNRITI  184 (745)
Q Consensus       134 ~~~v~~G~~~~l~C~~~~~p~----~~v~W~~~g~~----------------~~--~~~~~~~~~~-------~~~~L~i  184 (745)
                      ...+.+|++++|.|.....+.    ..+.|++....                ..  ......+...       +...|+|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            457789999999999865332    26899872110                00  0111122221       2357999


Q ss_pred             ccCCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy11701        185 ENLRKSDTGNYGCNATNSLGYVYKDVYVNVL  215 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~g~~~~~~~l~v~  215 (745)
                      .+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999988877777777764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=7.5e-07  Score=68.13  Aligned_cols=66  Identities=26%  Similarity=0.434  Sum_probs=46.5

Q ss_pred             eeEecCCcEEEEEEEeecCCCeeEEEECCE--ecCC------------CCCeEe-----ccCCcEEEEccCCCCCCEEEE
Q psy11701         43 EVALRNKKVELFCIFGGTPLPQTIWSKDGV--PINP------------SDRISQ-----GNYGKSLIIKHVEFSDQGSYT  103 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~--~i~~------------~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~  103 (745)
                      +...+|++|+|.|.........+.|++...  .+..            ..++..     .....+|+|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            457899999999998766666899998432  1110            112222     112237999999999999999


Q ss_pred             EEEEe
Q psy11701        104 CEVSN  108 (745)
Q Consensus       104 C~~~~  108 (745)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99954

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.27  E-value=1.2e-06  Score=67.97  Aligned_cols=71  Identities=17%  Similarity=0.254  Sum_probs=50.2

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEec------------CCCCCeEec--cCCcEEEEccCCCCCCE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPI------------NPSDRISQG--NYGKSLIIKHVEFSDQG  100 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i------------~~~~~~~~~--~~~~~L~i~~~~~~d~G  100 (745)
                      ...|..+.+.+|++|+|.|.........+.|||.  |+.+            ....++...  .....|+|.+++.+|+|
T Consensus         5 tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA   84 (107)
T d1tjgl1           5 TQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFA   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCc
Confidence            3457888899999999999996554558899982  2211            012233332  22347999999999999


Q ss_pred             EEEEEEE
Q psy11701        101 SYTCEVS  107 (745)
Q Consensus       101 ~Y~C~~~  107 (745)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d1tjgl1          85 TYYCQQL   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEC
Confidence            9999764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.26  E-value=2.7e-06  Score=66.72  Aligned_cols=72  Identities=21%  Similarity=0.353  Sum_probs=51.7

Q ss_pred             EeeccceeEecCCcEEEEEEEeec--CCCeeEEEE--CCE----ecCCCCCeEec--cC--CcEEEEccCCCCCCEEEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSK--DGV----PINPSDRISQG--NY--GKSLIIKHVEFSDQGSYTC  104 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~--~~~----~i~~~~~~~~~--~~--~~~L~i~~~~~~d~G~Y~C  104 (745)
                      ...|..+.+.+|++|+|.|...+.  ....+.|||  .+.    .+....++...  ..  ...|+|.+++.+|+|.|.|
T Consensus         4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   83 (113)
T d1vesa_           4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKC   83 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEee
Confidence            456778889999999999999653  344688997  222    23334454332  11  2379999999999999999


Q ss_pred             EEEe
Q psy11701        105 EVSN  108 (745)
Q Consensus       105 ~~~~  108 (745)
                      .+..
T Consensus        84 a~~~   87 (113)
T d1vesa_          84 QAFY   87 (113)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            9854

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=6.9e-07  Score=67.33  Aligned_cols=68  Identities=18%  Similarity=0.279  Sum_probs=49.0

Q ss_pred             ccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         40 RKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .....|..|++|+|.|.........+.|+|+|......  .........+.|.+++.+|+|.|+|.....
T Consensus        11 ~P~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~--~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          11 DRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             SSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             eCCCccCCCCeEEEEEeCCCCCceEEEEEECCcccceE--EcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            33557999999999998632344478999998643322  122223357899999999999999988653

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.25  E-value=2.2e-06  Score=66.17  Aligned_cols=71  Identities=17%  Similarity=0.279  Sum_probs=50.7

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEe---c---------CCCCCeEec--cCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVP---I---------NPSDRISQG--NYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~---i---------~~~~~~~~~--~~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++|+|.|...+.....+.||+.  ++.   |         ....++...  .....|.|.+++.+|+|.
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFAT   84 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCc
Confidence            457888899999999999986555557899972  221   1         012344332  223479999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1op3k1          85 YHCQHYA   91 (106)
T ss_dssp             EEEEEEC
T ss_pred             EeeeeCC
Confidence            9998754

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.23  E-value=2.2e-06  Score=67.77  Aligned_cols=72  Identities=17%  Similarity=0.216  Sum_probs=50.3

Q ss_pred             EeeccceeEecCCcEEEEEEEeec-CCCeeEEEEC-----CEec------C-----------CCCCeEe--cc--CCcEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKD-----GVPI------N-----------PSDRISQ--GN--YGKSL   89 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~-----~~~i------~-----------~~~~~~~--~~--~~~~L   89 (745)
                      +..|....+.+|++|+|.|...+. ....+.|+|.     ++.|      .           ...++..  ..  ....|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            456788889999999999998753 3457899973     2211      0           1123222  11  23479


Q ss_pred             EEccCCCCCCEEEEEEEEe
Q psy11701         90 IIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~  108 (745)
                      +|.+++.+|+|.|.|.+..
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             eecccCCCCCcEEEEeEcC
Confidence            9999999999999998753

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.23  E-value=2.8e-06  Score=66.20  Aligned_cols=71  Identities=15%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEe---c---------CCCCCeEecc--CCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVP---I---------NPSDRISQGN--YGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~---i---------~~~~~~~~~~--~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++++|.|...+.....+.|||.  ++.   |         ....++....  ....|+|.+++.+|+|.
T Consensus         8 QsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~   87 (109)
T d1bwwa_           8 QSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIAT   87 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCce
Confidence            447788899999999999997655557889972  211   1         0123343322  23479999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+..
T Consensus        88 YyCA~~~   94 (109)
T d1bwwa_          88 YYCQQYQ   94 (109)
T ss_dssp             EEEEECS
T ss_pred             EEEeecC
Confidence            9998753

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.22  E-value=3e-06  Score=66.01  Aligned_cols=72  Identities=19%  Similarity=0.366  Sum_probs=52.2

Q ss_pred             EeeccceeEecCCcEEEEEEEeec--CCCeeEEEE------CCEecCCCCCeEec--c--CCcEEEEccCCCCCCEEEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT--PLPQTIWSK------DGVPINPSDRISQG--N--YGKSLIIKHVEFSDQGSYTC  104 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~------~~~~i~~~~~~~~~--~--~~~~L~i~~~~~~d~G~Y~C  104 (745)
                      ...|..+.+.+|++++|.|...+.  ....+.|||      ....+....++...  .  ...+|+|.+++.+|+|.|.|
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence            356777889999999999988543  345799998      22334444554432  2  12379999999999999999


Q ss_pred             EEEe
Q psy11701        105 EVSN  108 (745)
Q Consensus       105 ~~~~  108 (745)
                      .+..
T Consensus        83 A~~~   86 (112)
T d1sq2n_          83 GLGV   86 (112)
T ss_dssp             EECB
T ss_pred             EEec
Confidence            9864

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=3.4e-06  Score=66.27  Aligned_cols=73  Identities=11%  Similarity=0.071  Sum_probs=51.8

Q ss_pred             eEeeccceeEecCCcEEEEEEEeec-CCCeeEEEE--CCEe---c----------CCCCCeEecc--CC--cEEEEccCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSK--DGVP---I----------NPSDRISQGN--YG--KSLIIKHVE   95 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~--~~~~---i----------~~~~~~~~~~--~~--~~L~i~~~~   95 (745)
                      +...|..+.+.+|++|+|.|...+. ....+.|||  .++.   |          ....|+.+..  .+  ..|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            3467788899999999999998543 344688998  2221   1          1234554422  22  369999999


Q ss_pred             CCCCEEEEEEEEe
Q psy11701         96 FSDQGSYTCEVSN  108 (745)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (745)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          82 RNDSGIYLCGAIS   94 (114)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCCeEEEEEEEe
Confidence            9999999999864

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.7e-06  Score=68.10  Aligned_cols=74  Identities=16%  Similarity=0.155  Sum_probs=52.2

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC-CCeeEEEECC--EecC------------------CCCCeEecc--CCcEEEEc
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP-LPQTIWSKDG--VPIN------------------PSDRISQGN--YGKSLIIK   92 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p-~~~v~W~~~~--~~i~------------------~~~~~~~~~--~~~~L~i~   92 (745)
                      +...|.+.++.+|++|+|.|...+.. ...+.|+|..  ..+.                  ...++....  ....|+|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            45778889999999999999986543 4468999821  1110                  012343322  23479999


Q ss_pred             cCCCCCCEEEEEEEEeC
Q psy11701         93 HVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~  109 (745)
                      +++.+|+|.|.|.+...
T Consensus        83 ~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          83 DFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCCCCCEEEeEeEcCC
Confidence            99999999999998754

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.22  E-value=1.8e-06  Score=67.97  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=51.9

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEe---c---CC------CCCeE--ecc--CCcEEEEccCCCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVP---I---NP------SDRIS--QGN--YGKSLIIKHVEFS   97 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~---i---~~------~~~~~--~~~--~~~~L~i~~~~~~   97 (745)
                      +...|..+.+.+|++|+|.|...+.....+.|||.  |+.   +   ..      ..++.  ...  ...+|.|.+++.+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            34567788899999999999987665557889982  221   1   00      11222  111  2238999999999


Q ss_pred             CCEEEEEEEEeCC
Q psy11701         98 DQGSYTCEVSNGV  110 (745)
Q Consensus        98 d~G~Y~C~~~~~~  110 (745)
                      |+|.|.|.+....
T Consensus        83 Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          83 DSATYLCAVRPTS   95 (113)
T ss_dssp             GCEEEEEEEEESS
T ss_pred             CCcEEeEeEecCC
Confidence            9999999997543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.21  E-value=1.5e-06  Score=68.61  Aligned_cols=72  Identities=26%  Similarity=0.407  Sum_probs=51.8

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC-------C-----CCCeEec----cCCcEEEEccCCCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN-------P-----SDRISQG----NYGKSLIIKHVEFSD   98 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~-------~-----~~~~~~~----~~~~~L~i~~~~~~d   98 (745)
                      ...|..+.+.+|++|+|.|.........+.|||.  +....       .     ..++...    ....+|.|.+++.+|
T Consensus         4 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~D   83 (114)
T d2cdea1           4 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSD   83 (114)
T ss_dssp             EEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGG
T ss_pred             EeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhh
Confidence            4557788899999999999987666668999972  21110       0     1233322    122479999999999


Q ss_pred             CEEEEEEEEe
Q psy11701         99 QGSYTCEVSN  108 (745)
Q Consensus        99 ~G~Y~C~~~~  108 (745)
                      +|.|.|.+..
T Consensus        84 sg~Y~Ca~~~   93 (114)
T d2cdea1          84 SASYICVVSD   93 (114)
T ss_dssp             CSEEEEEEEC
T ss_pred             Ccccceeeec
Confidence            9999999975

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=2e-06  Score=66.48  Aligned_cols=70  Identities=19%  Similarity=0.260  Sum_probs=49.1

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEec---C---------CCCCeEec--cCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPI---N---------PSDRISQG--NYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i---~---------~~~~~~~~--~~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++|+|.|.........+.|||.  |+..   -         ...++...  .....|.|.+++.+|+|.
T Consensus         6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~   85 (107)
T d1mexl1           6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAE   85 (107)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheeccee
Confidence            345567799999999999986554557999972  2211   0         12344432  233479999999999999


Q ss_pred             EEEEEE
Q psy11701        102 YTCEVS  107 (745)
Q Consensus       102 Y~C~~~  107 (745)
                      |.|.+.
T Consensus        86 YyCa~~   91 (107)
T d1mexl1          86 YFCQQY   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEEeEC
Confidence            999865

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.19  E-value=2.7e-06  Score=65.79  Aligned_cols=71  Identities=21%  Similarity=0.290  Sum_probs=50.3

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------------CCCCeEec--cCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------------PSDRISQG--NYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------------~~~~~~~~--~~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++|+|.|.........+.|||.  +....            ..+++...  .....|.|.+++.+|+|.
T Consensus         6 Q~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1d5il1           6 QSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGI   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEE
Confidence            446778899999999999986555557889972  22110            12344332  233489999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|....
T Consensus        86 YyCa~~~   92 (107)
T d1d5il1          86 YYCLQYD   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEeeecc
Confidence            9998753

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.5e-06  Score=66.68  Aligned_cols=82  Identities=13%  Similarity=0.206  Sum_probs=53.4

Q ss_pred             eEecCCcEEEEEEEee-cCCC--eeEEEECCEecCCCCCeE-eccC-----CcEEEEccCCCCCCE-EEEEEEEeCCee-
Q psy11701         44 VALRNKKVELFCIFGG-TPLP--QTIWSKDGVPINPSDRIS-QGNY-----GKSLIIKHVEFSDQG-SYTCEVSNGVGE-  112 (745)
Q Consensus        44 ~v~~G~~~~l~C~~~g-~p~~--~v~W~~~~~~i~~~~~~~-~~~~-----~~~L~i~~~~~~d~G-~Y~C~~~~~~g~-  112 (745)
                      .+.+|+.++|.|.+.+ .|.+  .+.|+++++.+....... ....     .+.|++ .++.+|.| .|+|+|.+..+. 
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~-~~~~~D~g~~ltC~a~~~~~~~   90 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTF-TPVIEDIGKVLVCRAKLHIDEM   90 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEE-CCCGGGTTCEEEEEEEECSCCC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEc-cCChHHCCcEEEEEEEcCcCCc
Confidence            4889999999999954 5754  689999998875321110 0011     124666 45666666 899999976432 


Q ss_pred             -----eEEEEEEEEEEecC
Q psy11701        113 -----AKSYSIDLSVLAAP  126 (745)
Q Consensus       113 -----~~~~~~~l~V~~~p  126 (745)
                           .......|.|+.+|
T Consensus        91 ~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          91 DSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             TTSCSEEEEEEECCEECCC
T ss_pred             cccccccceeEEeEEEeCC
Confidence                 23355668887765

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=4.8e-06  Score=64.47  Aligned_cols=72  Identities=15%  Similarity=0.190  Sum_probs=49.2

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCC---eeEEEE--CCEecC------------CCCCeEe--ccCCcEEEEccCCCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLP---QTIWSK--DGVPIN------------PSDRISQ--GNYGKSLIIKHVEFSD   98 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~---~v~W~~--~~~~i~------------~~~~~~~--~~~~~~L~i~~~~~~d   98 (745)
                      .+|..+.+.+|++++|.|...+....   -+.|||  .|+.+.            ...++..  ......|.|.+++.+|
T Consensus         5 tQ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~D   84 (110)
T d1oaql_           5 TQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTED   84 (110)
T ss_dssp             EECSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred             eeCCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccc
Confidence            33456789999999999999644322   388997  222211            1234432  2334589999999999


Q ss_pred             CEEEEEEEEeC
Q psy11701         99 QGSYTCEVSNG  109 (745)
Q Consensus        99 ~G~Y~C~~~~~  109 (745)
                      +|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (110)
T d1oaql_          85 EAIYFCALWYS   95 (110)
T ss_dssp             CEEEEEEEEET
T ss_pred             cEeEEEEcccC
Confidence            99999998653

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.1e-06  Score=67.20  Aligned_cols=67  Identities=24%  Similarity=0.442  Sum_probs=46.5

Q ss_pred             eEeeCCCeEEEEEEEeecCCCeEEEEeCCEec--c---------CCCCCCcee-------ecCceEEEccCCCCCCEEEE
Q psy11701        135 INAAEEETVTFECKASGLPEPEIHWVHNGKPI--S---------QAPPNPRRK-------VGPNRITIENLRKSDTGNYG  196 (745)
Q Consensus       135 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~--~---------~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~  196 (745)
                      +...+|++++|+|.........+.|++.....  .         ......+..       .++.+|+|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            45679999999999877666789999853311  0         111111111       12357999999999999999


Q ss_pred             EEEEe
Q psy11701        197 CNATN  201 (745)
Q Consensus       197 C~~~~  201 (745)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99954

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.16  E-value=3.2e-06  Score=66.65  Aligned_cols=74  Identities=16%  Similarity=0.157  Sum_probs=51.7

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------------CCCCeEec----cCCcEEEEccCCCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------------PSDRISQG----NYGKSLIIKHVEFS   97 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------------~~~~~~~~----~~~~~L~i~~~~~~   97 (745)
                      +...|..+.+.+|++|+|.|.........+.|||.  |+.+.            ...++...    .....|.|.+++.+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            34456667799999999999997666668999982  22110            01223322    12336999999999


Q ss_pred             CCEEEEEEEEeC
Q psy11701         98 DQGSYTCEVSNG  109 (745)
Q Consensus        98 d~G~Y~C~~~~~  109 (745)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1lp9e1          84 DSALYYCALFLA   95 (115)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             cCccceEEEEcC
Confidence            999999988653

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.16  E-value=4e-06  Score=66.16  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=50.3

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEe---c---CCCC---------CeEe--ccCCcEEEEccCCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVP---I---NPSD---------RISQ--GNYGKSLIIKHVEF   96 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~---i---~~~~---------~~~~--~~~~~~L~i~~~~~   96 (745)
                      +..+|..+.+.+|++|+|.|.........+.|||  .++.   |   ....         ++..  ......|+|.+++.
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            3445567889999999999998765566788997  2221   1   0011         1111  11234799999999


Q ss_pred             CCCEEEEEEEEeC
Q psy11701         97 SDQGSYTCEVSNG  109 (745)
Q Consensus        97 ~d~G~Y~C~~~~~  109 (745)
                      +|+|.|.|.+...
T Consensus        83 ~Dsg~YyCa~~~~   95 (115)
T d1i9ea_          83 SDSAVYFCAVSGF   95 (115)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             cccceecccccCC
Confidence            9999999988643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.15  E-value=4.1e-06  Score=66.27  Aligned_cols=74  Identities=15%  Similarity=0.225  Sum_probs=51.9

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC-----------------CCCCeEecc-C--CcEEEEcc
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN-----------------PSDRISQGN-Y--GKSLIIKH   93 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~-----------------~~~~~~~~~-~--~~~L~i~~   93 (745)
                      +...|....+.+|++|+|.|...+.....+.|||  .|+.+.                 ...++.... .  ...|.|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            3445677789999999999998766566899998  222110                 122343321 1  23699999


Q ss_pred             CCCCCCEEEEEEEEeC
Q psy11701         94 VEFSDQGSYTCEVSNG  109 (745)
Q Consensus        94 ~~~~d~G~Y~C~~~~~  109 (745)
                      ++.+|+|.|.|.+...
T Consensus        84 ~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAG   99 (118)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cccccCceEEEEEecC
Confidence            9999999999998643

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.14  E-value=3.6e-06  Score=65.00  Aligned_cols=71  Identities=18%  Similarity=0.166  Sum_probs=50.2

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------------CCCCeEec--cCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------------PSDRISQG--NYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------------~~~~~~~~--~~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++|+|.|.........+.||+.  |..+.            ...++...  ....+|.|.+++.+|+|.
T Consensus         5 QsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~   84 (106)
T d1a0ql1           5 QSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIAT   84 (106)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSE
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEe
Confidence            447778899999999999986555556899982  21110            12333332  233479999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1a0ql1          85 YYCLQYY   91 (106)
T ss_dssp             EEEEECS
T ss_pred             EEEEEeC
Confidence            9998753

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=4.5e-06  Score=66.48  Aligned_cols=77  Identities=18%  Similarity=0.351  Sum_probs=54.6

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc-------CCC-----------C-CCcee---e--c
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS-------QAP-----------P-NPRRK---V--G  178 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~-------~~~-----------~-~~~~~---~--~  178 (745)
                      +|.+...|....+.+|++++|.|.+.+.....+.|++-  |..+.       ...           . ..++.   .  .
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            47788889999999999999999998766778999981  22110       000           0 01111   1  1


Q ss_pred             CceEEEccCCCCCCEEEEEEEEe
Q psy11701        179 PNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       179 ~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      ...|+|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            13699999999999999998763

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=7.3e-06  Score=63.87  Aligned_cols=72  Identities=13%  Similarity=0.236  Sum_probs=47.3

Q ss_pred             ccceeEecCCcEEEEEEEeec-C-CCeeEEEEC--CEe---c-C--------CCCCeEec----cCCcEEEEccCCCCCC
Q psy11701         40 RKKEVALRNKKVELFCIFGGT-P-LPQTIWSKD--GVP---I-N--------PSDRISQG----NYGKSLIIKHVEFSDQ   99 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~-p-~~~v~W~~~--~~~---i-~--------~~~~~~~~----~~~~~L~i~~~~~~d~   99 (745)
                      ++.+.+.+|++|+|.|..... . ...+.|+|.  +..   | .        ...++.+.    ....+|.|.+++.+|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            345678999999999987533 2 235779872  211   1 0        11333321    1223799999999999


Q ss_pred             EEEEEEEEeCCe
Q psy11701        100 GSYTCEVSNGVG  111 (745)
Q Consensus       100 G~Y~C~~~~~~g  111 (745)
                      |.|.|.+.....
T Consensus        83 G~Y~C~v~~~~~   94 (108)
T d1hkfa_          83 GHYWCRIYRPSD   94 (108)
T ss_dssp             EEEEEEEECTTT
T ss_pred             EEEEEEEecCCC
Confidence            999999985433

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.13  E-value=4.1e-06  Score=65.39  Aligned_cols=69  Identities=14%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             ccceeEecCCcEEEEEEEeec-CCCeeEEEE--CCEecC------------CCCCeEecc--CCcEEEEccCCCCCCEEE
Q psy11701         40 RKKEVALRNKKVELFCIFGGT-PLPQTIWSK--DGVPIN------------PSDRISQGN--YGKSLIIKHVEFSDQGSY  102 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~--~~~~i~------------~~~~~~~~~--~~~~L~i~~~~~~d~G~Y  102 (745)
                      |..+.+.+|++|+|.|...+. ....+.|||  .|+.+.            ...++....  ....|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            556789999999999987543 233588998  222110            011122222  223799999999999999


Q ss_pred             EEEEEe
Q psy11701        103 TCEVSN  108 (745)
Q Consensus       103 ~C~~~~  108 (745)
                      .|.+..
T Consensus        85 yCa~~~   90 (110)
T d2esvd1          85 YCIVVR   90 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            999864

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.9e-06  Score=64.84  Aligned_cols=85  Identities=14%  Similarity=0.107  Sum_probs=57.3

Q ss_pred             CCCCceeEEeecCceeEEEEEeCCCCCcceeeeeEEEEEEeccCCCCceeEEEEc-cCceeEEEecccccCcceeEEEEE
Q psy11701        404 APSNFTLIQVIDAKKAVVSWNPVSPQSLRGHFRGYKVQTWTEKDGEGSIRELIVN-KGESTTTEVDKFVPASKNFARVLA  482 (745)
Q Consensus       404 ~P~~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~Y~~~V~a  482 (745)
                      +|.++++..  ......|.|++++..   +....|.|+|+..+...+.......+ ......+.+.+|.++..|.|||+|
T Consensus         6 ~P~nv~~~s--~n~~~~L~W~pp~~~---g~~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA   80 (99)
T d1y6kr1           6 SPPSVWFEA--EFFHHILHWTPIPQQ---SESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRA   80 (99)
T ss_dssp             CCSCEEEEE--ETTEEEEEECCCTTC---CTTCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEE
T ss_pred             CCCcceEEE--ECCEEEEEEcCCCCc---CCCCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEE
Confidence            467999865  445788999985433   22457999997765533322221221 111233467789999999999999


Q ss_pred             ecCCCCCCCCc
Q psy11701        483 FNGAYNGPPSE  493 (745)
Q Consensus       483 ~n~~G~g~~S~  493 (745)
                      .|..|.|.++.
T Consensus        81 ~n~~g~S~Ws~   91 (99)
T d1y6kr1          81 VDGSRHSQWTV   91 (99)
T ss_dssp             EETTEECCCEE
T ss_pred             EcCCCcCCCcc
Confidence            99999998865

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.3e-06  Score=64.05  Aligned_cols=79  Identities=16%  Similarity=0.310  Sum_probs=51.7

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCEeccCCCCCCceeecCceE---EEccCCCCCCEEEEEE
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGL-PE-PEIHWVHNGKPISQAPPNPRRKVGPNRI---TIENLRKSDTGNYGCN  198 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~L---~i~~v~~~d~G~Y~C~  198 (745)
                      .+|.+.+.+.. .+..|+.++|.|.+.|+ |. ..++|.+||..+............++++   ....+..++.+.|+|+
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~   82 (100)
T d1k5nb_           4 RTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACR   82 (100)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEE
T ss_pred             CCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEE
Confidence            45555443221 24578999999999994 54 3999999999986544333333444432   2234456677789999


Q ss_pred             EEeCC
Q psy11701        199 ATNSL  203 (745)
Q Consensus       199 ~~~~~  203 (745)
                      +.+..
T Consensus        83 V~H~s   87 (100)
T d1k5nb_          83 VNHVT   87 (100)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            98864

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.11  E-value=3.1e-06  Score=64.23  Aligned_cols=67  Identities=16%  Similarity=0.076  Sum_probs=46.9

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCe-EeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI-SQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      ...|..|++|+|.|... .+...+.|+|+|......... ........+.|..+...|+|.|+|.....
T Consensus        14 ~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          14 GPTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CSEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCcccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            55789999999999875 345589999998654321111 11222234678888899999999987654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.5e-06  Score=63.82  Aligned_cols=69  Identities=12%  Similarity=0.143  Sum_probs=47.2

Q ss_pred             EeeCCCeEEEEEEEee-cCCC--eEEEEeCCEeccCCCCCCc-----eeecCceEEEccCCCCCCEEEEEEEEeCCc
Q psy11701        136 NAAEEETVTFECKASG-LPEP--EIHWVHNGKPISQAPPNPR-----RKVGPNRITIENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       136 ~v~~G~~~~l~C~~~~-~p~~--~v~W~~~g~~~~~~~~~~~-----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      .+.+|+.++|+|.+.+ +|.+  .+.|+++++.+........     .....+.|.+.....++...|+|+|++..+
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~   88 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID   88 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcC
Confidence            3789999999999965 6754  6899999988753221111     111234577765555556689999998754

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=1.1e-05  Score=64.38  Aligned_cols=87  Identities=21%  Similarity=0.261  Sum_probs=54.5

Q ss_pred             EecCceeEeeCCCeEEEEEEEee----cCCCeEEEEeCC--E----ec---------c--CCCCCCceee------cCce
Q psy11701        129 TVEPEFINAAEEETVTFECKASG----LPEPEIHWVHNG--K----PI---------S--QAPPNPRRKV------GPNR  181 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~----~p~~~v~W~~~g--~----~~---------~--~~~~~~~~~~------~~~~  181 (745)
                      ...|....+..|++++|.|....    .....+.|++..  .    .+         .  ......+...      ++.+
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            45677888999999999999753    223489998721  1    01         1  1111223222      2357


Q ss_pred             EEEccCCCCCCEEEEEEEEeCCce--EEEEEEEEEe
Q psy11701        182 ITIENLRKSDTGNYGCNATNSLGY--VYKDVYVNVL  215 (745)
Q Consensus       182 L~i~~v~~~d~G~Y~C~~~~~~g~--~~~~~~l~v~  215 (745)
                      |.|.+++.+|+|.|.|.+.+..+.  ....+.|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            999999999999999999875432  3334566554

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.10  E-value=2.9e-06  Score=66.01  Aligned_cols=70  Identities=19%  Similarity=0.274  Sum_probs=48.1

Q ss_pred             eeccceeEecCCcEEEEEEEeec-CCCeeEEEEC--CEe---cC---------CCCCeEecc--CCcEEEEccCCCCCCE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT-PLPQTIWSKD--GVP---IN---------PSDRISQGN--YGKSLIIKHVEFSDQG  100 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~~--~~~---i~---------~~~~~~~~~--~~~~L~i~~~~~~d~G  100 (745)
                      ..|..+.+.+|++|+|.|..... ....+.|||.  ++.   |-         ..+++....  ....|.|.+++.+|+|
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa   85 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA   85 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence            44677789999999999998543 2336889982  221   10         123343322  2237999999999999


Q ss_pred             EEEEEEE
Q psy11701        101 SYTCEVS  107 (745)
Q Consensus       101 ~Y~C~~~  107 (745)
                      .|.|.+.
T Consensus        86 ~YyCa~~   92 (108)
T d2fx7l1          86 VYYCQQY   92 (108)
T ss_dssp             EEEEEEC
T ss_pred             EEeeecC
Confidence            9999875

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.10  E-value=7.9e-06  Score=63.56  Aligned_cols=71  Identities=18%  Similarity=0.233  Sum_probs=48.3

Q ss_pred             eeccceeEecCCcEEEEEEEeec-C---CCeeEEEEC--CEec----C--------CCCCeEecc--CCcEEEEccCCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT-P---LPQTIWSKD--GVPI----N--------PSDRISQGN--YGKSLIIKHVEFS   97 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~-p---~~~v~W~~~--~~~i----~--------~~~~~~~~~--~~~~L~i~~~~~~   97 (745)
                      ..|..+.+.+|++|+|.|..... .   ..-+.|||.  |+..    .        ...++....  ....|+|.+++.+
T Consensus         6 QsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~   85 (111)
T d2gsia1           6 QSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEE   85 (111)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccccc
Confidence            44677889999999999988532 1   224889982  2211    0        123444322  2347999999999


Q ss_pred             CCEEEEEEEEe
Q psy11701         98 DQGSYTCEVSN  108 (745)
Q Consensus        98 d~G~Y~C~~~~  108 (745)
                      |+|.|.|.+..
T Consensus        86 DsA~YyCa~~~   96 (111)
T d2gsia1          86 DAATYYCSHIR   96 (111)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCceEEEEECC
Confidence            99999998753

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.10  E-value=4.5e-06  Score=65.33  Aligned_cols=73  Identities=18%  Similarity=0.264  Sum_probs=49.7

Q ss_pred             EeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEecC------------CCCCeEe--cc--CCcEEEEccCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPIN------------PSDRISQ--GN--YGKSLIIKHVEF   96 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i~------------~~~~~~~--~~--~~~~L~i~~~~~   96 (745)
                      +.+|..+.+.+|++|+|.|...+..  ..-+.|+|.  ++.+.            ..+++..  +.  ....|.|.+++.
T Consensus         4 ltQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~   83 (111)
T d1cd0a_           4 LNQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT   83 (111)
T ss_dssp             EECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCc
Confidence            4456678899999999999986543  234889982  22210            1233332  22  234899999999


Q ss_pred             CCCEEEEEEEEeC
Q psy11701         97 SDQGSYTCEVSNG  109 (745)
Q Consensus        97 ~d~G~Y~C~~~~~  109 (745)
                      +|+|.|.|.....
T Consensus        84 ~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          84 EDEADYYCQSYDA   96 (111)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             ccCcEEEEeeccC
Confidence            9999999987643

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.09  E-value=3.6e-06  Score=65.67  Aligned_cols=70  Identities=26%  Similarity=0.388  Sum_probs=48.5

Q ss_pred             eccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEe---cC---------CCCCeEe--ccCCcEEEEccCCCCCCE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVP---IN---------PSDRISQ--GNYGKSLIIKHVEFSDQG  100 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~---i~---------~~~~~~~--~~~~~~L~i~~~~~~d~G  100 (745)
                      +|+.+.+.+|++|+|.|.+.+..  ...+.|||.  ++.   |.         ..+++..  +.....|.|.+++.+|++
T Consensus         6 Q~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA   85 (114)
T d2rhea_           6 QPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEA   85 (114)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cCCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCc
Confidence            34457799999999999986543  346889983  221   10         1123332  233348999999999999


Q ss_pred             EEEEEEEe
Q psy11701        101 SYTCEVSN  108 (745)
Q Consensus       101 ~Y~C~~~~  108 (745)
                      .|.|.+..
T Consensus        86 ~YyCA~~~   93 (114)
T d2rhea_          86 DYYCAAWN   93 (114)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeecC
Confidence            99999864

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.07  E-value=2.4e-06  Score=66.12  Aligned_cols=72  Identities=18%  Similarity=0.253  Sum_probs=49.0

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------------CCCCeEe--ccCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------------PSDRISQ--GNYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------------~~~~~~~--~~~~~~L~i~~~~~~d~G~  101 (745)
                      .+|+.+.+.+|++|+|.|.........+.|+|.  ++.+.            ...++..  ......|.|.+++.+|+|.
T Consensus         5 tQp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav   84 (109)
T d1w72l1           5 TQPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEAD   84 (109)
T ss_dssp             BCCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEE
Confidence            344567799999999999975444457999972  22110            0122322  2223479999999999999


Q ss_pred             EEEEEEeC
Q psy11701        102 YTCEVSNG  109 (745)
Q Consensus       102 Y~C~~~~~  109 (745)
                      |.|.+...
T Consensus        85 YyCA~~~~   92 (109)
T d1w72l1          85 YYCQVWDS   92 (109)
T ss_dssp             EEEEEEET
T ss_pred             EEEEecCC
Confidence            99998653

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.07  E-value=2.9e-06  Score=65.67  Aligned_cols=70  Identities=21%  Similarity=0.217  Sum_probs=49.6

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEec------------CCCCCeE--eccCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPI------------NPSDRIS--QGNYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i------------~~~~~~~--~~~~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++|+|.|.........+.|||  .|+.+            ....++.  ......+|.|.+++.+|+|.
T Consensus         6 QsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d3cx5k1           6 QTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIAT   85 (107)
T ss_dssp             EESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSE
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCc
Confidence            45777889999999999998766555799997  22211            0112222  22233489999999999999


Q ss_pred             EEEEEE
Q psy11701        102 YTCEVS  107 (745)
Q Consensus       102 Y~C~~~  107 (745)
                      |.|.+.
T Consensus        86 YyCa~~   91 (107)
T d3cx5k1          86 YFCQHH   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEeeeC
Confidence            999764

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.5e-06  Score=66.35  Aligned_cols=67  Identities=19%  Similarity=0.241  Sum_probs=48.7

Q ss_pred             eeEecCCcEEEEEEEeecC----CCeeEEEECCEecCC------------CCCeEecc-CCcEEEEccCCCCCCEEEEEE
Q psy11701         43 EVALRNKKVELFCIFGGTP----LPQTIWSKDGVPINP------------SDRISQGN-YGKSLIIKHVEFSDQGSYTCE  105 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p----~~~v~W~~~~~~i~~------------~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~  105 (745)
                      ++...|++++|.|......    ...+.|.+++..+-.            ..+..+.. ++.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            5688999999999875322    236788888765421            23444433 345899999999999999999


Q ss_pred             EEeC
Q psy11701        106 VSNG  109 (745)
Q Consensus       106 ~~~~  109 (745)
                      +.+.
T Consensus        84 V~~~   87 (105)
T d1dr9a1          84 VLKY   87 (105)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9864

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.07  E-value=4.4e-06  Score=65.26  Aligned_cols=71  Identities=20%  Similarity=0.284  Sum_probs=48.7

Q ss_pred             eccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEecC------------CCCCeEe--ccCCcEEEEccCCCCCCE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPIN------------PSDRISQ--GNYGKSLIIKHVEFSDQG  100 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i~------------~~~~~~~--~~~~~~L~i~~~~~~d~G  100 (745)
                      +|..+.+.+|++++|.|...+..  ...+.|||.  +..+.            ..+++..  +.....|.|.+++.+|+|
T Consensus         6 Qp~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           6 QPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (111)
T ss_dssp             CCSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eCcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCc
Confidence            45567899999999999885432  335899972  21110            1233332  223358999999999999


Q ss_pred             EEEEEEEeC
Q psy11701        101 SYTCEVSNG  109 (745)
Q Consensus       101 ~Y~C~~~~~  109 (745)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (111)
T d1rzfl1          86 DYYCGTWDS   94 (111)
T ss_dssp             EEEEEEEET
T ss_pred             ceEEeecCC
Confidence            999998653

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.07  E-value=7.7e-06  Score=63.98  Aligned_cols=72  Identities=15%  Similarity=0.166  Sum_probs=50.0

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC------C------CCCeEe--c--cCCcEEEEccCCCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN------P------SDRISQ--G--NYGKSLIIKHVEFSD   98 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~------~------~~~~~~--~--~~~~~L~i~~~~~~d   98 (745)
                      ...|..+.+.+|++++|.|.........+.||+  .|+...      .      ..++..  .  ....+|.|.+++.+|
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            345667779999999999998766556788998  232211      0      122222  1  223489999999999


Q ss_pred             CEEEEEEEEe
Q psy11701         99 QGSYTCEVSN  108 (745)
Q Consensus        99 ~G~Y~C~~~~  108 (745)
                      +|.|.|.+..
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999998864

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=8.3e-06  Score=63.95  Aligned_cols=66  Identities=20%  Similarity=0.370  Sum_probs=44.3

Q ss_pred             eeEecCCcEEEEEEEeecCCC---eeE--EEECCEe-c---------CC------CCCeEeccCCcEEEEccCCCCCCEE
Q psy11701         43 EVALRNKKVELFCIFGGTPLP---QTI--WSKDGVP-I---------NP------SDRISQGNYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        43 ~~v~~G~~~~l~C~~~g~p~~---~v~--W~~~~~~-i---------~~------~~~~~~~~~~~~L~i~~~~~~d~G~  101 (745)
                      +.+..|++|+|.|.....+..   .+.  |.+++.. +         ..      ..+......+.+|+|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            567889999999998543322   233  4443221 1         00      1234455556789999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+..
T Consensus        84 Y~C~V~~   90 (110)
T d1ncna_          84 YQCIIHH   90 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999964

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.7e-06  Score=66.18  Aligned_cols=87  Identities=23%  Similarity=0.382  Sum_probs=56.3

Q ss_pred             ecCceeEeeCCCeEEEEEEEeec---CCCeEEEEeCCEe-----cc------CCCCCCceee------cCceEEEccCCC
Q psy11701        130 VEPEFINAAEEETVTFECKASGL---PEPEIHWVHNGKP-----IS------QAPPNPRRKV------GPNRITIENLRK  189 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~---p~~~v~W~~~g~~-----~~------~~~~~~~~~~------~~~~L~i~~v~~  189 (745)
                      ..|....+.+|++++|.|.....   ....+.|++....     +.      ......+...      ....|.|.+++.
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            36788889999999999987531   2246789874211     10      0011112111      124799999999


Q ss_pred             CCCEEEEEEEEeCCceEEEEEEEEEee
Q psy11701        190 SDTGNYGCNATNSLGYVYKDVYVNVLA  216 (745)
Q Consensus       190 ~d~G~Y~C~~~~~~g~~~~~~~l~v~~  216 (745)
                      +|+|.|.|.+..........+.|.|..
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            999999999875544445567777764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.05  E-value=3.8e-06  Score=66.29  Aligned_cols=74  Identities=16%  Similarity=0.212  Sum_probs=51.2

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC------CC-------CCeE--ecc--CCcEEEEccCCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN------PS-------DRIS--QGN--YGKSLIIKHVEF   96 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~------~~-------~~~~--~~~--~~~~L~i~~~~~   96 (745)
                      +...|..+.+.+|++|+|.|.........+.|||  .|+.+.      ..       .++.  ...  ....|+|.+++.
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            3455778889999999999998765556799998  222111      01       1121  111  123699999999


Q ss_pred             CCCEEEEEEEEeC
Q psy11701         97 SDQGSYTCEVSNG  109 (745)
Q Consensus        97 ~d~G~Y~C~~~~~  109 (745)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          83 SDAAEYFCAVSES   95 (115)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             cCCccceeeecCC
Confidence            9999999999753

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.05  E-value=4.4e-06  Score=64.76  Aligned_cols=71  Identities=23%  Similarity=0.246  Sum_probs=50.1

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEe---c-C--------CCCCeEec--cCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVP---I-N--------PSDRISQG--NYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~---i-~--------~~~~~~~~--~~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++|+|.|.........+.|||  .++.   | .        ..+++...  .....|.|.+++.+|+|.
T Consensus         6 QsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~   85 (109)
T d1mqkl_           6 QTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGS   85 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCee
Confidence            45788889999999999998655455699998  2221   1 0        01333322  223479999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+..
T Consensus        86 YyCA~~~   92 (109)
T d1mqkl_          86 YYCQHHY   92 (109)
T ss_dssp             EEEEECS
T ss_pred             EEEeeeC
Confidence            9998753

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.04  E-value=4.2e-06  Score=66.07  Aligned_cols=73  Identities=18%  Similarity=0.359  Sum_probs=50.5

Q ss_pred             EeeccceeEecCCcEEEEEEEeec-CCCeeEEEE--CCEecC---------------CCCCeEecc----CCcEEEEccC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSK--DGVPIN---------------PSDRISQGN----YGKSLIIKHV   94 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~--~~~~i~---------------~~~~~~~~~----~~~~L~i~~~   94 (745)
                      ...|..+.+.+|++|+|.|...+. ....+.|+|  .|+.+.               ...|+....    ...+|+|.++
T Consensus         4 tQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (116)
T d1tvda_           4 TQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPV   83 (116)
T ss_dssp             ECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSC
T ss_pred             EccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCc
Confidence            455677789999999999998544 455789997  222110               123444321    1237999999


Q ss_pred             CCCCCEEEEEEEEeC
Q psy11701         95 EFSDQGSYTCEVSNG  109 (745)
Q Consensus        95 ~~~d~G~Y~C~~~~~  109 (745)
                      +.+|+|.|.|.+...
T Consensus        84 ~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          84 RTEDSATYYCAFTLP   98 (116)
T ss_dssp             CGGGCEEEEEEEECT
T ss_pred             cccccccceeeEecC
Confidence            999999999988653

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.03  E-value=1.3e-05  Score=62.43  Aligned_cols=72  Identities=21%  Similarity=0.312  Sum_probs=49.3

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEec-------CC--------CCCeE---eccCCcEEEEccCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPI-------NP--------SDRIS---QGNYGKSLIIKHVE   95 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i-------~~--------~~~~~---~~~~~~~L~i~~~~   95 (745)
                      +...|....+.+|++++|.|...+. ...+.|||  .|+..       ..        ..++.   .......|+|.+++
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            3455778889999999999988543 45799998  22211       00        01111   11223479999999


Q ss_pred             CCCCEEEEEEEEe
Q psy11701         96 FSDQGSYTCEVSN  108 (745)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (745)
                      .+|+|.|.|.+..
T Consensus        83 ~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          83 PSQTSVYFCASGG   95 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HhhCEEEEEeeCC
Confidence            9999999998864

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.03  E-value=3.4e-06  Score=65.21  Aligned_cols=74  Identities=19%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc---------CCCCCCceee----cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS---------QAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~---------~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      ++..|....+.+|++++|.|...+.....+.||+.  |+...         ......++..    ....|.|.++..+|+
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDV   83 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccC
Confidence            34557888899999999999987655557999982  21110         1111122222    235899999999999


Q ss_pred             EEEEEEEEe
Q psy11701        193 GNYGCNATN  201 (745)
Q Consensus       193 G~Y~C~~~~  201 (745)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1ospl1          84 ATYFCQQYW   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             CcEEEeecc
Confidence            999997653

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.02  E-value=5.1e-06  Score=65.11  Aligned_cols=70  Identities=17%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------C------CCCeEe--c--cCCcEEEEccCCCCCCE
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------P------SDRISQ--G--NYGKSLIIKHVEFSDQG  100 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------~------~~~~~~--~--~~~~~L~i~~~~~~d~G  100 (745)
                      .|..+.+.+|++|+|.|.........+.|||.  |+...      .      ..+...  .  .....|.|.+++.+|+|
T Consensus         5 ~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   84 (110)
T d1u3ha1           5 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA   84 (110)
T ss_dssp             SCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCS
T ss_pred             cCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCce
Confidence            46677899999999999986544446889973  22211      0      111111  1  12237999999999999


Q ss_pred             EEEEEEEe
Q psy11701        101 SYTCEVSN  108 (745)
Q Consensus       101 ~Y~C~~~~  108 (745)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (110)
T d1u3ha1          85 TYFCAASA   92 (110)
T ss_dssp             EEEECCEE
T ss_pred             eEeeeecC
Confidence            99999864

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.02  E-value=1.2e-05  Score=62.68  Aligned_cols=71  Identities=23%  Similarity=0.177  Sum_probs=48.7

Q ss_pred             EeeccceeEecCCcEEEEEEEeecC-----CCeeEEEE--CCEecC------------CCCCeEec--cCCcEEEEccCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTP-----LPQTIWSK--DGVPIN------------PSDRISQG--NYGKSLIIKHVE   95 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p-----~~~v~W~~--~~~~i~------------~~~~~~~~--~~~~~L~i~~~~   95 (745)
                      ...|....+.+|++|+|.|...+..     ...+.|||  .|+...            ..+++...  ....+|+|.+++
T Consensus         6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~   85 (113)
T d1n4xl_           6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   85 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC
Confidence            3457778899999999999985432     23688997  222110            12334432  223489999999


Q ss_pred             CCCCEEEEEEEE
Q psy11701         96 FSDQGSYTCEVS  107 (745)
Q Consensus        96 ~~d~G~Y~C~~~  107 (745)
                      .+|+|.|.|...
T Consensus        86 ~~DsavYyCa~~   97 (113)
T d1n4xl_          86 AEDLGIYYCFQG   97 (113)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccCEEEEEEEC
Confidence            999999999654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.02  E-value=8.3e-06  Score=63.54  Aligned_cols=71  Identities=23%  Similarity=0.331  Sum_probs=48.1

Q ss_pred             eeccceeEecCCcEEEEEEEeec-C---CCeeEEEE--CCEecC------------CCCCeEecc--CCcEEEEccCCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT-P---LPQTIWSK--DGVPIN------------PSDRISQGN--YGKSLIIKHVEFS   97 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~-p---~~~v~W~~--~~~~i~------------~~~~~~~~~--~~~~L~i~~~~~~   97 (745)
                      ..|..+.+.+|++|+|.|..... +   ...+.|||  .|+.+.            ...++....  ....|.|.+++.+
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   85 (111)
T d1j05a_           6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD   85 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGG
T ss_pred             ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccc
Confidence            44677789999999999987422 1   22488998  333211            122343332  2348999999999


Q ss_pred             CCEEEEEEEEe
Q psy11701         98 DQGSYTCEVSN  108 (745)
Q Consensus        98 d~G~Y~C~~~~  108 (745)
                      |+|.|.|.+.+
T Consensus        86 Dsa~YyCa~~~   96 (111)
T d1j05a_          86 DVATYYCQQTN   96 (111)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCccEEEeecC
Confidence            99999998753

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.7e-06  Score=62.18  Aligned_cols=75  Identities=12%  Similarity=0.309  Sum_probs=54.5

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  202 (745)
                      .+|.+...|.. .|..|++|+|.|.........+.|+|+|.......   ........+.|.+++.+|+|.|+|.....
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~---~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH---QSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE---EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEE---cCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            36777777765 68999999999986433445899999986433111   11112357999999999999999987643

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.01  E-value=3.7e-06  Score=64.74  Aligned_cols=74  Identities=22%  Similarity=0.346  Sum_probs=50.9

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe--CCEecc---------CCCCCCcee----ecCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVH--NGKPIS---------QAPPNPRRK----VGPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~--~g~~~~---------~~~~~~~~~----~~~~~L~i~~v~~~d~  192 (745)
                      ++..|....+.+|++++|.|.........+.||+  .|+...         ......+..    ..+..|.|.+++.+|+
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCC
Confidence            4556788889999999999998766666799998  222210         000111111    1235899999999999


Q ss_pred             EEEEEEEEe
Q psy11701        193 GNYGCNATN  201 (745)
Q Consensus       193 G~Y~C~~~~  201 (745)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1c5cl1          84 ADYYCLQYA   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEecCc
Confidence            999997653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.01  E-value=6.9e-06  Score=64.70  Aligned_cols=74  Identities=15%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             eEeeccceeEecCCcEEEEEEEeec-CCCeeEEEE--CCEecC------C-C------CCe--Eecc--CCcEEEEccCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGT-PLPQTIWSK--DGVPIN------P-S------DRI--SQGN--YGKSLIIKHVE   95 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~-p~~~v~W~~--~~~~i~------~-~------~~~--~~~~--~~~~L~i~~~~   95 (745)
                      +...|..+.+.+|++|+|.|..... ....+.|||  .+..+.      . .      .+.  ....  ....|.|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            4456777889999999999987533 344678998  222111      0 0      111  1111  12379999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy11701         96 FSDQGSYTCEVSNG  109 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~  109 (745)
                      .+|+|.|.|.+...
T Consensus        83 ~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          83 VVDSAVYFCALSGF   96 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cccCCCceEeCCCC
Confidence            99999999988654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.01  E-value=1.3e-05  Score=63.10  Aligned_cols=75  Identities=15%  Similarity=0.251  Sum_probs=51.1

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CE---ec-c-----CCCCCCceee------cCceEEEccCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GK---PI-S-----QAPPNPRRKV------GPNRITIENLRKS  190 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~---~~-~-----~~~~~~~~~~------~~~~L~i~~v~~~  190 (745)
                      +...|....+.+|++++|.|.........+.|||.  |+   .+ .     ......++..      ....|.|.+++.+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            34557778899999999999987666668999983  21   11 0     0000111111      1346999999999


Q ss_pred             CCEEEEEEEEeC
Q psy11701        191 DTGNYGCNATNS  202 (745)
Q Consensus       191 d~G~Y~C~~~~~  202 (745)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1lp9e1          84 DSALYYCALFLA   95 (115)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             cCccceEEEEcC
Confidence            999999987654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.00  E-value=1.5e-05  Score=61.40  Aligned_cols=74  Identities=26%  Similarity=0.321  Sum_probs=50.5

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC---CEec---c-----CCCCCCceee----cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN---GKPI---S-----QAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~---g~~~---~-----~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      ++..|....+.+|++++|.|.........+.||+-   ..+.   .     ......+...    ....|.|.++..+|+
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            45567888899999999999987655557999982   1111   0     0011112221    234799999999999


Q ss_pred             EEEEEEEEe
Q psy11701        193 GNYGCNATN  201 (745)
Q Consensus       193 G~Y~C~~~~  201 (745)
                      |.|.|.+..
T Consensus        83 A~YyCa~~~   91 (106)
T d1a0ql1          83 ATYYCLQYY   91 (106)
T ss_dssp             SEEEEEECS
T ss_pred             EeEEEEEeC
Confidence            999998653

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=5.5e-06  Score=62.96  Aligned_cols=79  Identities=16%  Similarity=0.277  Sum_probs=49.2

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCceeecCceE---EEccCCCCCCEEEEEE
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRRKVGPNRI---TIENLRKSDTGNYGCN  198 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~L---~i~~v~~~d~G~Y~C~  198 (745)
                      .+|.+.+.+.. ....|+.++|.|.+.| +|. ..++|.+||+.+............++++   ....+..++.+.|+|+
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   81 (99)
T d1lk2b_           3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR   81 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEE
Confidence            35555443222 1346888999999999 444 4899999999887433222222233322   2223455667789999


Q ss_pred             EEeCC
Q psy11701        199 ATNSL  203 (745)
Q Consensus       199 ~~~~~  203 (745)
                      +.+..
T Consensus        82 V~H~s   86 (99)
T d1lk2b_          82 VKHDS   86 (99)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            98764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.2e-05  Score=59.37  Aligned_cols=78  Identities=23%  Similarity=0.295  Sum_probs=49.8

Q ss_pred             CCCCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCC--CeEeccCCc--EEEEccCCCCCCEEEE
Q psy11701         30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSD--RISQGNYGK--SLIIKHVEFSDQGSYT  103 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~--~~~~~~~~~--~L~i~~~~~~d~G~Y~  103 (745)
                      +.+|...+..+.  .+..|..++|.|.+.|+ |.. .|+|.+||+++....  ......++.  ....-.+..+|.+.|+
T Consensus         3 ~~~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~yt   80 (100)
T d1k5nb_           3 QRTPKIQVYSRH--PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA   80 (100)
T ss_dssp             CBCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEE
T ss_pred             cCCCeeEEEcCC--cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEE
Confidence            345665544333  34689999999999998 433 899999999986432  222333332  1222233456677999


Q ss_pred             EEEEeC
Q psy11701        104 CEVSNG  109 (745)
Q Consensus       104 C~~~~~  109 (745)
                      |.+...
T Consensus        81 C~V~H~   86 (100)
T d1k5nb_          81 CRVNHV   86 (100)
T ss_dssp             EEEECT
T ss_pred             EEEEeC
Confidence            999875

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3.1e-06  Score=66.64  Aligned_cols=70  Identities=16%  Similarity=0.259  Sum_probs=47.0

Q ss_pred             ccceeEecCCcEEEEEEEeec--CCCeeEEEEC--CEe---cC---C---------CCCeEecc--CC--cEEEEccCCC
Q psy11701         40 RKKEVALRNKKVELFCIFGGT--PLPQTIWSKD--GVP---IN---P---------SDRISQGN--YG--KSLIIKHVEF   96 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~--~~~---i~---~---------~~~~~~~~--~~--~~L~i~~~~~   96 (745)
                      .+...+.+|++|+|.|...+.  ....+.|+|.  +..   |.   .         ..|+.+..  ..  .+|+|.+++.
T Consensus         6 e~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~   85 (113)
T d1smoa_           6 EEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQV   85 (113)
T ss_dssp             EEEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCc
Confidence            345678899999999998543  3446889982  221   10   0         12444321  22  3699999999


Q ss_pred             CCCEEEEEEEEeC
Q psy11701         97 SDQGSYTCEVSNG  109 (745)
Q Consensus        97 ~d~G~Y~C~~~~~  109 (745)
                      +|+|.|.|.+...
T Consensus        86 ~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          86 EDSGLYQCVIYQP   98 (113)
T ss_dssp             GGCEEEEEEECCT
T ss_pred             ccCceEEEEEECC
Confidence            9999999998654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=5.2e-06  Score=61.90  Aligned_cols=66  Identities=20%  Similarity=0.319  Sum_probs=46.9

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEeccCCcEEEEccCCCCCCEEEEEEEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQGNYGKSLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      ..| ...|..|++|+|.|... .....+.|+|+|..-...  .........+.|.+++.+|+|.|+|...
T Consensus         9 a~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~--~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           9 VHP-GPEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQ--RGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             EES-CSEEETTCEEEEEEECS-SSCSEEEEEEESSSCEEE--EEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             EeC-CCcccCCCcEEEEECCC-CCCCEEEEEECCCcccee--ecCCCceeEEEecccChhcCceEEEEeE
Confidence            444 45689999999999975 344589999987642211  1112233579999999999999999754

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3e-06  Score=63.89  Aligned_cols=68  Identities=15%  Similarity=0.147  Sum_probs=47.3

Q ss_pred             cceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCC-eEeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         41 KKEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDR-ISQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      ....|..|++|+|.|... .+...+.++|+|.......+ .........+.|.+++.+|+|.|+|.....
T Consensus        11 Ps~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (96)
T d1ugna1          11 PGSVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD   79 (96)
T ss_dssp             SCSEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCC
Confidence            346689999999999974 44557888998864221111 111123357999999999999999987543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.98  E-value=5.6e-06  Score=65.14  Aligned_cols=75  Identities=17%  Similarity=0.361  Sum_probs=51.8

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCC--Ee---cc---CCC---CCCceee------cCceEEEccCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNG--KP---IS---QAP---PNPRRKV------GPNRITIENLRKS  190 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g--~~---~~---~~~---~~~~~~~------~~~~L~i~~v~~~  190 (745)
                      +...|....+.+|++++|.|.........+.||+..  ..   |.   ...   ...++..      ....|.|.+++.+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            455678888999999999999876566689999721  11   10   000   0011111      2347999999999


Q ss_pred             CCEEEEEEEEeC
Q psy11701        191 DTGNYGCNATNS  202 (745)
Q Consensus       191 d~G~Y~C~~~~~  202 (745)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          83 DSASYICVVSDR   94 (114)
T ss_dssp             GCSEEEEEEECS
T ss_pred             hCcccceeeecC
Confidence            999999999764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.97  E-value=1.4e-05  Score=62.66  Aligned_cols=72  Identities=17%  Similarity=0.282  Sum_probs=49.3

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEec------CC------CCCe--Eecc--CCcEEEEccCCCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPI------NP------SDRI--SQGN--YGKSLIIKHVEFSD   98 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i------~~------~~~~--~~~~--~~~~L~i~~~~~~d   98 (745)
                      ...|..+.+.+|++++|.|...+. ...+.|||  .|+.+      ..      ..++  ....  ....|+|.+++.+|
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccc
Confidence            345777889999999999998643 34788998  22211      01      1122  2222  23479999999999


Q ss_pred             CEEEEEEEEeC
Q psy11701         99 QGSYTCEVSNG  109 (745)
Q Consensus        99 ~G~Y~C~~~~~  109 (745)
                      +|.|.|.+...
T Consensus        83 sa~YyCa~~~~   93 (115)
T d1ogad1          83 TGLYLCAGAGS   93 (115)
T ss_dssp             CEEEEEEEECT
T ss_pred             eeeEcccccCC
Confidence            99999988643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.97  E-value=3.4e-06  Score=65.05  Aligned_cols=74  Identities=27%  Similarity=0.421  Sum_probs=50.8

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc---------CCCCCCceee----cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS---------QAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~---------~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      ++..|....+.+|++++|.|.........+.||+.  |+...         ......++..    ....|.|.++..+|+
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC
Confidence            45567888899999999999886655557999972  22211         1111122221    235799999999999


Q ss_pred             EEEEEEEEe
Q psy11701        193 GNYGCNATN  201 (745)
Q Consensus       193 G~Y~C~~~~  201 (745)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (106)
T d1i8ka_          84 GDYYCLQSF   92 (106)
T ss_dssp             EEEEEEECS
T ss_pred             EEEeEecCc
Confidence            999997653

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.8e-05  Score=60.51  Aligned_cols=82  Identities=20%  Similarity=0.358  Sum_probs=54.2

Q ss_pred             cCCCCCeeEeeccceeEecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCC
Q psy11701         29 NRHAPKQQYVTRKKEVALRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSD   98 (745)
Q Consensus        29 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d   98 (745)
                      +..+|...+..|....+ .++.++|.|.+.|+ |. .+|+|.+||+++..+..   .....++     +.|.|..-....
T Consensus         2 P~~~P~V~l~~ps~~~~-~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~   80 (102)
T d1q0xl2           2 PKSSPTVTLFPPSSEEL-STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWER   80 (102)
T ss_dssp             CCBCCEEEEECCCHHHH-TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTT
T ss_pred             cCCCCEEEEECCCHHHh-CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCC
Confidence            34567777766655554 46679999999887 43 38999999998864321   1222222     246675555555


Q ss_pred             CEEEEEEEEeCCe
Q psy11701         99 QGSYTCEVSNGVG  111 (745)
Q Consensus        99 ~G~Y~C~~~~~~g  111 (745)
                      ...|+|+|.+...
T Consensus        81 ~~~ytC~V~H~~~   93 (102)
T d1q0xl2          81 HSSYSCQVTHEGH   93 (102)
T ss_dssp             CCEEEEEEEETTE
T ss_pred             CCEEEEEEEECCc
Confidence            6699999988643

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.97  E-value=1.7e-05  Score=61.63  Aligned_cols=70  Identities=20%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             eeccceeEecCCcEEEEEEEeecC-----CCeeEEEEC--CEec------------CCCCCeEec--cCCcEEEEccCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTP-----LPQTIWSKD--GVPI------------NPSDRISQG--NYGKSLIIKHVEF   96 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p-----~~~v~W~~~--~~~i------------~~~~~~~~~--~~~~~L~i~~~~~   96 (745)
                      ..|..+.+.+|++|+|.|...+..     ..-+.|++.  |+.+            ...+++...  .....|.|.+++.
T Consensus         6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~   85 (112)
T d1ncwl1           6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA   85 (112)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc
Confidence            347778899999999999975432     224889972  2211            112344322  2234799999999


Q ss_pred             CCCEEEEEEEE
Q psy11701         97 SDQGSYTCEVS  107 (745)
Q Consensus        97 ~d~G~Y~C~~~  107 (745)
                      +|+|.|.|...
T Consensus        86 eDsAvYYC~~~   96 (112)
T d1ncwl1          86 EDLGVYYCWQG   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcCEeEEEEcC
Confidence            99999999653

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.96  E-value=8e-06  Score=63.94  Aligned_cols=71  Identities=13%  Similarity=0.216  Sum_probs=48.6

Q ss_pred             eeccceeEecCCcEEEEEEEeecC-CCeeEEEEC--CEecC-------C-----CCCeEeccC--CcEEEEccCCCCCCE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTP-LPQTIWSKD--GVPIN-------P-----SDRISQGNY--GKSLIIKHVEFSDQG  100 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p-~~~v~W~~~--~~~i~-------~-----~~~~~~~~~--~~~L~i~~~~~~d~G  100 (745)
                      ..|..+.+.+|++|+|.|...+.. ...+.|||.  |+.+.       .     ..++.....  ...|.|.+++.+|+|
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence            456678899999999999986544 335899982  22211       0     112333222  237999999999999


Q ss_pred             EEEEEEEe
Q psy11701        101 SYTCEVSN  108 (745)
Q Consensus       101 ~Y~C~~~~  108 (745)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99998753

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=1.4e-05  Score=63.60  Aligned_cols=72  Identities=21%  Similarity=0.263  Sum_probs=48.6

Q ss_pred             eeccceeEecCCcEEEEEEEeec---C---CCeeEEEECCEe----c-----------CCCCCeEec----cCCcEEEEc
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT---P---LPQTIWSKDGVP----I-----------NPSDRISQG----NYGKSLIIK   92 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~---p---~~~v~W~~~~~~----i-----------~~~~~~~~~----~~~~~L~i~   92 (745)
                      ..|+.+.+.+|++|+|.|.....   +   ...+.|++....    +           ....|+.+.    ....+|+|.
T Consensus         5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~   84 (118)
T d1qfoa_           5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLK   84 (118)
T ss_dssp             ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             ECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEEC
Confidence            45678899999999999998521   1   114557763211    1           012344442    223479999


Q ss_pred             cCCCCCCEEEEEEEEeC
Q psy11701         93 HVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~  109 (745)
                      +++.+|+|.|.|++...
T Consensus        85 ~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          85 DLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             SCCGGGCEEEEEEEECC
T ss_pred             CCChhHCEEEEEEEEeC
Confidence            99999999999999754

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.96  E-value=1.4e-05  Score=62.21  Aligned_cols=69  Identities=22%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             eccceeEecCCcEEEEEEEeecC-----CCeeEEEE--CCEecC------------CCCCeEecc--CCcEEEEccCCCC
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTP-----LPQTIWSK--DGVPIN------------PSDRISQGN--YGKSLIIKHVEFS   97 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p-----~~~v~W~~--~~~~i~------------~~~~~~~~~--~~~~L~i~~~~~~   97 (745)
                      .|..+.+.+|++|+|.|...+..     ...+.|++  .|+...            ...++....  ....|.|.+++.+
T Consensus         7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~   86 (112)
T d1mjul1           7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAE   86 (112)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcccc
Confidence            35567789999999999986531     23588987  222211            122343322  2247999999999


Q ss_pred             CCEEEEEEEE
Q psy11701         98 DQGSYTCEVS  107 (745)
Q Consensus        98 d~G~Y~C~~~  107 (745)
                      |++.|.|...
T Consensus        87 DsAvYyCa~~   96 (112)
T d1mjul1          87 DVGVYYCLQH   96 (112)
T ss_dssp             GCEEEEEEEC
T ss_pred             CCceEEEEeC
Confidence            9999999643

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.96  E-value=1.4e-05  Score=60.39  Aligned_cols=78  Identities=17%  Similarity=0.256  Sum_probs=53.8

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEeCC
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .+|.+...|.. .|..|++|+|.|.... +...+.|+|+|..................+.|..+...|+|.|+|......
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~   82 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHD   82 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCC
Confidence            46777777754 6789999999998754 566899999986443111111111122457888899999999999876543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.96  E-value=1.8e-05  Score=61.68  Aligned_cols=70  Identities=23%  Similarity=0.352  Sum_probs=48.2

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC----------------CCCCeEeccC---CcEEEEccCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN----------------PSDRISQGNY---GKSLIIKHVEF   96 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~----------------~~~~~~~~~~---~~~L~i~~~~~   96 (745)
                      ..|....+.+|++|+|.|...+. ...+.|||.  |+.+.                ...++.....   ...|+|.+++.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   82 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL   82 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred             ECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence            45777889999999999986432 347889972  22110                0233433221   24799999999


Q ss_pred             CCCEEEEEEEEe
Q psy11701         97 SDQGSYTCEVSN  108 (745)
Q Consensus        97 ~d~G~Y~C~~~~  108 (745)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (111)
T d2esve1          83 EDSGVYFCASSQ   94 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCceEEEeeeC
Confidence            999999998764

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.96  E-value=1e-05  Score=63.26  Aligned_cols=72  Identities=19%  Similarity=0.302  Sum_probs=49.2

Q ss_pred             eeccceeEecCCcEEEEEEEeecC---CCeeEEEEC--CEecC------------CCCCeEe--ccCCcEEEEccCCCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTP---LPQTIWSKD--GVPIN------------PSDRISQ--GNYGKSLIIKHVEFSD   98 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p---~~~v~W~~~--~~~i~------------~~~~~~~--~~~~~~L~i~~~~~~d   98 (745)
                      .+|..+.+.+|++|+|.|...+..   ...+.|||.  ++.+.            ...++..  ......|.|.+++.+|
T Consensus         5 tQP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   84 (112)
T d1lgva1           5 TQPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAED   84 (112)
T ss_dssp             BCCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             cCCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCcccc
Confidence            346678899999999999986542   235889982  22110            1123332  2234579999999999


Q ss_pred             CEEEEEEEEeC
Q psy11701         99 QGSYTCEVSNG  109 (745)
Q Consensus        99 ~G~Y~C~~~~~  109 (745)
                      +|.|.|.+.+.
T Consensus        85 sa~YyCa~~~~   95 (112)
T d1lgva1          85 EADYYCSSYDG   95 (112)
T ss_dssp             CEEEEEEEECS
T ss_pred             CEEEEEeeecC
Confidence            99999988653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.95  E-value=7.6e-06  Score=63.42  Aligned_cols=73  Identities=23%  Similarity=0.370  Sum_probs=50.4

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc---------CCCCCCceee----cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS---------QAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~---------~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      ++..|....+.+|++++|.|.........+.||+.  ++...         ......+...    ....|.|.+++.+|+
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD   83 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence            45668888899999999999987655557999972  21110         0001112211    235799999999999


Q ss_pred             EEEEEEEE
Q psy11701        193 GNYGCNAT  200 (745)
Q Consensus       193 G~Y~C~~~  200 (745)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d1kcvl1          84 ADYYCGQS   91 (107)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEec
Confidence            99999764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.95  E-value=4.4e-06  Score=64.58  Aligned_cols=72  Identities=18%  Similarity=0.253  Sum_probs=50.2

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC------------CCCCeEec--cCCcEEEEccCCCCCCE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN------------PSDRISQG--NYGKSLIIKHVEFSDQG  100 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~------------~~~~~~~~--~~~~~L~i~~~~~~d~G  100 (745)
                      +.+|..+.+.+|++|+|.|.........+.|||  .|+.+.            -.+++...  .....|.|.+++.+|+|
T Consensus         3 ltQP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa   82 (108)
T d1nfde1           3 LIQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEA   82 (108)
T ss_dssp             EECCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCS
T ss_pred             eECCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCc
Confidence            345677889999999999988544444688998  232110            01334332  23348999999999999


Q ss_pred             EEEEEEEe
Q psy11701        101 SYTCEVSN  108 (745)
Q Consensus       101 ~Y~C~~~~  108 (745)
                      .|.|.+..
T Consensus        83 ~YyCA~~~   90 (108)
T d1nfde1          83 AYYCLSSY   90 (108)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99999864

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=3e-05  Score=53.25  Aligned_cols=82  Identities=24%  Similarity=0.387  Sum_probs=58.1

Q ss_pred             cceeEecCCcEEEEEEEee-cCCCeeEEEE-CCE---ecCCCCC--eEeccCC----cEEEEccCCCCCCEEEEEEEEeC
Q psy11701         41 KKEVALRNKKVELFCIFGG-TPLPQTIWSK-DGV---PINPSDR--ISQGNYG----KSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g-~p~~~v~W~~-~~~---~i~~~~~--~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      +.-.+-.|+.+.|.|.+.- .-.|+++|-| +|.   +|..+..  .+....+    -.|.+..+-.+|.|.|+|.|.-.
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence            3446889999999999953 3578999987 443   3442222  2222222    26889999999999999999877


Q ss_pred             CeeeEEEEEEEEE
Q psy11701        110 VGEAKSYSIDLSV  122 (745)
Q Consensus       110 ~g~~~~~~~~l~V  122 (745)
                      .+-..+.++.+.|
T Consensus        91 s~vieSHSvti~V  103 (104)
T d1xaua_          91 SQVINSHSVTIHV  103 (104)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             hhheecceEEEEe
Confidence            7766666666665

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.3e-05  Score=64.06  Aligned_cols=73  Identities=21%  Similarity=0.310  Sum_probs=49.1

Q ss_pred             EeeccceeEecCCcEEEEEEEeec----C---CCeeEEEECCEecC---------------C--CCCeEecc----CCcE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGT----P---LPQTIWSKDGVPIN---------------P--SDRISQGN----YGKS   88 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~----p---~~~v~W~~~~~~i~---------------~--~~~~~~~~----~~~~   88 (745)
                      +..|..+++.+|++|+|.|.....    .   ...+.|++....-.               .  .+|+.+..    ...+
T Consensus         5 ~~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   84 (121)
T d2g5ra1           5 LTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCT   84 (121)
T ss_dssp             EECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCC
T ss_pred             EEeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEE
Confidence            345677899999999999998421    1   12477987532110               0  12444422    2347


Q ss_pred             EEEccCCCCCCEEEEEEEEeC
Q psy11701         89 LIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        89 L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      |+|.+++.+|+|.|.|.+...
T Consensus        85 L~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          85 LSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             EEECSCCGGGCEEEEEEEEET
T ss_pred             EEECCCChHHCEEEEEEEEeC
Confidence            999999999999999999754

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.94  E-value=9.5e-06  Score=63.68  Aligned_cols=77  Identities=19%  Similarity=0.391  Sum_probs=52.2

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEe---cc---CCC---CCCcee---e---cCceEEEccCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKP---IS---QAP---PNPRRK---V---GPNRITIENLRKS  190 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~---~~---~~~---~~~~~~---~---~~~~L~i~~v~~~  190 (745)
                      +...|....+.+|++++|.|...+.....+.|||.  |+.   +.   ...   ...+..   .   ....|.|.++..+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            45568888999999999999987655557899982  221   10   000   001111   0   1247999999999


Q ss_pred             CCEEEEEEEEeCCc
Q psy11701        191 DTGNYGCNATNSLG  204 (745)
Q Consensus       191 d~G~Y~C~~~~~~g  204 (745)
                      |+|.|.|.+....+
T Consensus        83 Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          83 DSATYLCAVRPTSG   96 (113)
T ss_dssp             GCEEEEEEEEESSS
T ss_pred             CCcEEeEeEecCCC
Confidence            99999999875543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.93  E-value=1.3e-05  Score=62.49  Aligned_cols=74  Identities=19%  Similarity=0.280  Sum_probs=50.8

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC------C------CCCeEe--cc--CCcEEEEccCCCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN------P------SDRISQ--GN--YGKSLIIKHVEFS   97 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~------~------~~~~~~--~~--~~~~L~i~~~~~~   97 (745)
                      +...|..+.+.+|++|+|.|.........+.|||  .|+.+.      .      ..++..  ..  ....|.|.+++.+
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            3456777789999999999988655445799998  232210      0      122322  11  1247999999999


Q ss_pred             CCEEEEEEEEeC
Q psy11701         98 DQGSYTCEVSNG  109 (745)
Q Consensus        98 d~G~Y~C~~~~~  109 (745)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (110)
T d1ac6a_          83 DSAVYYCALSGG   94 (110)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CCcccceeecCC
Confidence            999999998654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.7e-05  Score=62.19  Aligned_cols=76  Identities=22%  Similarity=0.354  Sum_probs=51.5

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeCC----E-ec---c---------CCCCCCceee----cCceEEE
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHNG----K-PI---S---------QAPPNPRRKV----GPNRITI  184 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~g----~-~~---~---------~~~~~~~~~~----~~~~L~i  184 (745)
                      .+...|...++.+|++++|.|...+. ....+.|||..    . .+   .         ......++..    ....|.|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            35677888899999999999998653 34578999821    1 11   0         0011112211    1247999


Q ss_pred             ccCCCCCCEEEEEEEEeC
Q psy11701        185 ENLRKSDTGNYGCNATNS  202 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~  202 (745)
                      .+++.+|+|.|.|.+...
T Consensus        82 ~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          82 SDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SSCCGGGCEEEEEEEEET
T ss_pred             ccCCCCCCEEEeEeEcCC
Confidence            999999999999998754

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.93  E-value=6.6e-06  Score=63.26  Aligned_cols=72  Identities=21%  Similarity=0.403  Sum_probs=47.6

Q ss_pred             cCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc---------CCCCCCcee----ecCceEEEccCCCCCCEEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS---------QAPPNPRRK----VGPNRITIENLRKSDTGNY  195 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~---------~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y  195 (745)
                      +|....+.+|++++|.|.........+.||+.  |....         ......+..    .....|.|.+++.+|+|.|
T Consensus         4 Qp~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           4 QPPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceE
Confidence            35577889999999999886544457899982  21110         000011111    1235799999999999999


Q ss_pred             EEEEEeC
Q psy11701        196 GCNATNS  202 (745)
Q Consensus       196 ~C~~~~~  202 (745)
                      .|.+...
T Consensus        84 yCA~~~~   90 (103)
T d8faba1          84 YCQAWDN   90 (103)
T ss_dssp             EEEEEET
T ss_pred             EeeecCC
Confidence            9977643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.93  E-value=1.1e-05  Score=61.00  Aligned_cols=79  Identities=20%  Similarity=0.255  Sum_probs=49.5

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeec-CC-CeEEEEeCCEeccCCCCC-CceeecCceE---EEccCCCCCCEEEEE
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGL-PE-PEIHWVHNGKPISQAPPN-PRRKVGPNRI---TIENLRKSDTGNYGC  197 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~~~~~~-~~~~~~~~~L---~i~~v~~~d~G~Y~C  197 (745)
                      .+|.+.+.|.. .+..|+.++|.|.+.|+ |. ..++|++||+.+...... ......++++   ....+..++.+.|+|
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            35665554433 35678999999999994 43 599999999888643211 1122233221   222334566778999


Q ss_pred             EEEeCC
Q psy11701        198 NATNSL  203 (745)
Q Consensus       198 ~~~~~~  203 (745)
                      +|.+..
T Consensus        81 ~V~H~s   86 (100)
T d1muja1          81 KVEHWG   86 (100)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            999864

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.93  E-value=6.5e-06  Score=63.60  Aligned_cols=75  Identities=23%  Similarity=0.372  Sum_probs=51.2

Q ss_pred             eEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CE---ecc------CCCCCCceee----cCceEEEccCCCCC
Q psy11701        127 YFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GK---PIS------QAPPNPRRKV----GPNRITIENLRKSD  191 (745)
Q Consensus       127 ~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~---~~~------~~~~~~~~~~----~~~~L~i~~v~~~d  191 (745)
                      .++..|....+.+|++++|.|.........+.||+.  |+   .|.      ......+...    ....|+|.+++.+|
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCc
Confidence            345668888899999999999987655668999982  21   110      0001112221    23479999999999


Q ss_pred             CEEEEEEEEe
Q psy11701        192 TGNYGCNATN  201 (745)
Q Consensus       192 ~G~Y~C~~~~  201 (745)
                      +|.|.|.+..
T Consensus        83 sA~YyCa~~~   92 (107)
T d1tjgl1          83 FATYYCQQLH   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CceEEEEECc
Confidence            9999996543

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.93  E-value=2.4e-05  Score=59.05  Aligned_cols=73  Identities=18%  Similarity=0.294  Sum_probs=47.4

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeec-C-CCeeEEEECCEecCCCCC---eEeccCCc-----EEEEccCCCCCCEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGT-P-LPQTIWSKDGVPINPSDR---ISQGNYGK-----SLIIKHVEFSDQGS  101 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p-~~~v~W~~~~~~i~~~~~---~~~~~~~~-----~L~i~~~~~~d~G~  101 (745)
                      +|...+.++.  .+..|+.++|.|.+.|+ | ...|.|++||+++..+..   .....++.     .|.+   ..++.+.
T Consensus         3 pP~V~v~p~~--~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v---~~~~~~~   77 (100)
T d1muja1           3 APQATVFPKS--PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTF---IPSDDDI   77 (100)
T ss_dssp             CCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEE---CCCTTCC
T ss_pred             CCEEEEEcCC--ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEE---cCCCCCE
Confidence            3555444333  35678999999999988 4 348999999999874311   12222221     3444   4456678


Q ss_pred             EEEEEEeC
Q psy11701        102 YTCEVSNG  109 (745)
Q Consensus       102 Y~C~~~~~  109 (745)
                      |+|+|...
T Consensus        78 ytC~V~H~   85 (100)
T d1muja1          78 YDCKVEHW   85 (100)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99999875

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.92  E-value=9.6e-06  Score=62.48  Aligned_cols=74  Identities=26%  Similarity=0.388  Sum_probs=50.7

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CE---ecc------CCCCCCceee----cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GK---PIS------QAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~---~~~------~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      ++..|....+.+|++++|.|.........+.||+.  |+   .+.      ......++..    ....|.|.+++.+|+
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            44668888999999999999987655557999983  11   110      1111112211    234799999999999


Q ss_pred             EEEEEEEEe
Q psy11701        193 GNYGCNATN  201 (745)
Q Consensus       193 G~Y~C~~~~  201 (745)
                      |.|.|.+..
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999997654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.92  E-value=5.2e-06  Score=64.27  Aligned_cols=74  Identities=20%  Similarity=0.366  Sum_probs=50.5

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc---------CCCCCCceee----cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS---------QAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~---------~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      ++..|....+.+|++++|.|.........+.||+.  |+.+.         ......++..    .+..|.|.+++.+|+
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCC
Confidence            45567888899999999999886545557999982  22110         0111112221    235899999999999


Q ss_pred             EEEEEEEEe
Q psy11701        193 GNYGCNATN  201 (745)
Q Consensus       193 G~Y~C~~~~  201 (745)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (107)
T d1j1pl_          84 GMYFCQQAN   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEcCC
Confidence            999997643

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.91  E-value=6.9e-06  Score=63.41  Aligned_cols=73  Identities=22%  Similarity=0.353  Sum_probs=49.9

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEec---c------CCCCCCceee----cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPI---S------QAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~---~------~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      ++..|....+.+|++++|.|.........+.||+.  |+..   .      ......++..    .+..|.|.+++.+|+
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL   83 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence            45567778899999999999986554557999972  2211   0      1111122222    235799999999999


Q ss_pred             EEEEEEEE
Q psy11701        193 GNYGCNAT  200 (745)
Q Consensus       193 G~Y~C~~~  200 (745)
                      +.|.|.+.
T Consensus        84 A~YyCa~~   91 (107)
T d1mexl1          84 AEYFCQQY   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeEEEeEC
Confidence            99999764

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=2.1e-05  Score=59.56  Aligned_cols=77  Identities=19%  Similarity=0.212  Sum_probs=47.9

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCCe--EeccCCc--EEEEccCCCCCCEEEEE
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDRI--SQGNYGK--SLIIKHVEFSDQGSYTC  104 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~~--~~~~~~~--~L~i~~~~~~d~G~Y~C  104 (745)
                      .+|...+..+..  +..|+.++|.|.+.|+ |. ..|+|.+||+++......  ....++.  ......+..++.+.|+|
T Consensus         3 ~~P~V~v~~~~~--~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (99)
T d1lk2b_           3 KTPQIQVYSRHP--PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC   80 (99)
T ss_dssp             BCCEEEEEESSC--CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEE
T ss_pred             CCCEEEEEcCCC--ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEE
Confidence            345554443332  4578899999999987 43 389999999998753321  1222221  11122334556678999


Q ss_pred             EEEeC
Q psy11701        105 EVSNG  109 (745)
Q Consensus       105 ~~~~~  109 (745)
                      ++...
T Consensus        81 ~V~H~   85 (99)
T d1lk2b_          81 RVKHD   85 (99)
T ss_dssp             EEECT
T ss_pred             EEEeC
Confidence            99875

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.90  E-value=3.1e-05  Score=59.57  Aligned_cols=74  Identities=28%  Similarity=0.450  Sum_probs=49.5

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CE---ecc------CCCCCCcee-e---cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GK---PIS------QAPPNPRRK-V---GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~---~~~------~~~~~~~~~-~---~~~~L~i~~v~~~d~  192 (745)
                      +...|....+.+|++++|.|.........+.||+.  |+   .+.      ......... .   ....|.|.+++.+|+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            44567888899999999999987655557999982  11   110      000111111 1   124799999999999


Q ss_pred             EEEEEEEEe
Q psy11701        193 GNYGCNATN  201 (745)
Q Consensus       193 G~Y~C~~~~  201 (745)
                      |.|.|.+.+
T Consensus        84 a~YyCA~~~   92 (108)
T d1jhll_          84 AMYICQQHN   92 (108)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEeeCC
Confidence            999997554

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.89  E-value=1.1e-05  Score=63.60  Aligned_cols=73  Identities=18%  Similarity=0.287  Sum_probs=49.3

Q ss_pred             EeeccceeEecCCcEEEEEEEee-cCCCeeEEEEC--CEecC--------C-----CCCeEec--c--CCcEEEEccCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGG-TPLPQTIWSKD--GVPIN--------P-----SDRISQG--N--YGKSLIIKHVEF   96 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g-~p~~~v~W~~~--~~~i~--------~-----~~~~~~~--~--~~~~L~i~~~~~   96 (745)
                      ...|..+.+.+|++|+|.|.... .....+.|||.  |..+.        .     ..++...  .  ....|.|.+++.
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            34567788999999999998753 33446889982  22110        0     1223322  1  223699999999


Q ss_pred             CCCEEEEEEEEeC
Q psy11701         97 SDQGSYTCEVSNG  109 (745)
Q Consensus        97 ~d~G~Y~C~~~~~  109 (745)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          83 EDSAVYFCAMRGD   95 (115)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cccccccceeecC
Confidence            9999999998643

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=6.6e-06  Score=61.93  Aligned_cols=75  Identities=20%  Similarity=0.304  Sum_probs=53.0

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEEe
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      +|.+...|.. .|..|++|+|.|... .+...+.++|+|..................+.|.+++..|+|.|+|....
T Consensus         4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           4 KPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            5677777764 478999999999964 35568999998864321011111122346899999999999999998753

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.89  E-value=1.6e-05  Score=62.52  Aligned_cols=74  Identities=15%  Similarity=0.226  Sum_probs=49.3

Q ss_pred             EecCceeEeeCCCeEEEEEEEeecCCCeEEEEe--CCEe---ccC-CCCC--------Ccee----ecCceEEEccCCCC
Q psy11701        129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVH--NGKP---ISQ-APPN--------PRRK----VGPNRITIENLRKS  190 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~--~g~~---~~~-~~~~--------~~~~----~~~~~L~i~~v~~~  190 (745)
                      ...|....+.+|++++|.|.........+.||+  .|+.   +-. ....        .+..    .....|.|.++..+
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS   83 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence            445667889999999999998765556789997  2221   110 0000        0111    01247999999999


Q ss_pred             CCEEEEEEEEeC
Q psy11701        191 DTGNYGCNATNS  202 (745)
Q Consensus       191 d~G~Y~C~~~~~  202 (745)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1i9ea_          84 DSAVYFCAVSGF   95 (115)
T ss_dssp             GCEEEEEEEEET
T ss_pred             ccceecccccCC
Confidence            999999987643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.89  E-value=3.5e-05  Score=60.63  Aligned_cols=73  Identities=16%  Similarity=0.319  Sum_probs=49.8

Q ss_pred             EecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeC-----CEecc--------------CCCCCCcee--e----cCceE
Q psy11701        129 TVEPEFINAAEEETVTFECKASGL-PEPEIHWVHN-----GKPIS--------------QAPPNPRRK--V----GPNRI  182 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~-----g~~~~--------------~~~~~~~~~--~----~~~~L  182 (745)
                      ...|....+.+|++++|.|.+.+. ....+.||+-     ++.+.              ......+..  .    ....|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            456788889999999999998763 4457999973     22210              000111111  1    23479


Q ss_pred             EEccCCCCCCEEEEEEEEe
Q psy11701        183 TIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       183 ~i~~v~~~d~G~Y~C~~~~  201 (745)
                      .|.+++.+|+|.|.|.+..
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             eecccCCCCCcEEEEeEcC
Confidence            9999999999999998753

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.88  E-value=6.4e-06  Score=63.63  Aligned_cols=73  Identities=26%  Similarity=0.368  Sum_probs=49.5

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc---------CCCCCCc----eeecCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS---------QAPPNPR----RKVGPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~---------~~~~~~~----~~~~~~~L~i~~v~~~d~  192 (745)
                      ++..|....+.+|++++|.|.........+.||+.  |+.+.         ......+    .......|.|.+++.+|+
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence            44567778899999999999987655567999972  21110         0001111    111235899999999999


Q ss_pred             EEEEEEEE
Q psy11701        193 GNYGCNAT  200 (745)
Q Consensus       193 G~Y~C~~~  200 (745)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d3cx5k1          84 ATYFCQHH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             CcEEeeeC
Confidence            99999754

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=4e-05  Score=59.92  Aligned_cols=75  Identities=23%  Similarity=0.440  Sum_probs=51.0

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeC--CE-e--cc-------CCCCCCceee---c---CceEEEccCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHN--GK-P--IS-------QAPPNPRRKV---G---PNRITIENLR  188 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~--g~-~--~~-------~~~~~~~~~~---~---~~~L~i~~v~  188 (745)
                      ++..|....+.+|++++|.|...+. ....+.||+.  |+ +  +-       ......++..   .   ...|.|.++.
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            4567888899999999999998653 3457899982  22 1  10       0111222221   1   2369999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy11701        189 KSDTGNYGCNATNS  202 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~  202 (745)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999988644

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.88  E-value=3.7e-05  Score=60.59  Aligned_cols=75  Identities=16%  Similarity=0.357  Sum_probs=51.7

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEe--CCEec--------------cCCCCCCceee--c---CceEEEcc
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVH--NGKPI--------------SQAPPNPRRKV--G---PNRITIEN  186 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~--~g~~~--------------~~~~~~~~~~~--~---~~~L~i~~  186 (745)
                      +...|....+.+|++++|.|...+.....+.||+  .|+.+              .......++..  .   ...|.|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            4556777889999999999998765566899998  22211              01111222221  1   23699999


Q ss_pred             CCCCCCEEEEEEEEeC
Q psy11701        187 LRKSDTGNYGCNATNS  202 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~  202 (745)
                      +..+|+|.|.|.+...
T Consensus        84 ~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAG   99 (118)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cccccCceEEEEEecC
Confidence            9999999999988643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.87  E-value=3.1e-05  Score=60.47  Aligned_cols=74  Identities=22%  Similarity=0.388  Sum_probs=49.9

Q ss_pred             EEecCceeEeeCCCeEEEEEEEee--cCCCeEEEEeC--CEecc-CCCCCCceee----c--CceEEEccCCCCCCEEEE
Q psy11701        128 FTVEPEFINAAEEETVTFECKASG--LPEPEIHWVHN--GKPIS-QAPPNPRRKV----G--PNRITIENLRKSDTGNYG  196 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~--g~~~~-~~~~~~~~~~----~--~~~L~i~~v~~~d~G~Y~  196 (745)
                      +...|....+.+|++++|+|..++  .....+.||+.  |.... ......+...    .  ...|+|.+++.+|+|.|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   82 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence            455688888999999999999875  34457999972  22111 0001111111    1  237999999999999999


Q ss_pred             EEEEe
Q psy11701        197 CNATN  201 (745)
Q Consensus       197 C~~~~  201 (745)
                      |.+..
T Consensus        83 Ca~~~   87 (113)
T d1vesa_          83 CQAFY   87 (113)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            99854

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.87  E-value=2.5e-05  Score=61.66  Aligned_cols=73  Identities=18%  Similarity=0.183  Sum_probs=51.5

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEecC------------CCCCeEec--c--CCcEEEEccCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPIN------------PSDRISQG--N--YGKSLIIKHVE   95 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i~------------~~~~~~~~--~--~~~~L~i~~~~   95 (745)
                      ++.+++.+.+.+|++++|.|...+..  ...+.|+|.  |+.+.            ..+++...  .  ....|.|.+++
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            45677788899999999999997543  346899972  22110            12344322  2  22489999999


Q ss_pred             CCCCEEEEEEEEe
Q psy11701         96 FSDQGSYTCEVSN  108 (745)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (745)
                      .+|+|.|.|....
T Consensus        84 ~~Dsa~YyCA~~~   96 (120)
T d1hxma1          84 ERDEGSYYCACDT   96 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCCceeecCccc
Confidence            9999999998754

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.87  E-value=9.5e-06  Score=63.21  Aligned_cols=72  Identities=15%  Similarity=0.293  Sum_probs=47.3

Q ss_pred             cCceeEeeCCCeEEEEEEEeec-CCCeEEEEeC--CEecc---C----C--CCCCceee----cCceEEEccCCCCCCEE
Q psy11701        131 EPEFINAAEEETVTFECKASGL-PEPEIHWVHN--GKPIS---Q----A--PPNPRRKV----GPNRITIENLRKSDTGN  194 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~--g~~~~---~----~--~~~~~~~~----~~~~L~i~~v~~~d~G~  194 (745)
                      +|....+.+|++++|.|..... ....+.||+.  |+...   .    .  ....+...    ....|.|.+++.+|+|.
T Consensus         4 QP~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   83 (110)
T d2esvd1           4 QPPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAV   83 (110)
T ss_dssp             CCSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEE
T ss_pred             cCCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceE
Confidence            3667889999999999987653 3346899982  22110   0    0  00111111    22479999999999999


Q ss_pred             EEEEEEeC
Q psy11701        195 YGCNATNS  202 (745)
Q Consensus       195 Y~C~~~~~  202 (745)
                      |.|.+...
T Consensus        84 YyCa~~~~   91 (110)
T d2esvd1          84 YYCIVVRS   91 (110)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEeCC
Confidence            99988643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=1.6e-05  Score=62.78  Aligned_cols=71  Identities=13%  Similarity=0.133  Sum_probs=47.8

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCC---eeEEEE--CCEecC-------C-------CCC---eEeccCCcEEEEccC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLP---QTIWSK--DGVPIN-------P-------SDR---ISQGNYGKSLIIKHV   94 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~---~v~W~~--~~~~i~-------~-------~~~---~~~~~~~~~L~i~~~   94 (745)
                      +.+|..+.+.+|++|+|.|........   .+.|+|  .|+.+.       .       ..+   .........|.|.++
T Consensus         3 VtQP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l   82 (117)
T d1dqta_           3 VTQPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGL   82 (117)
T ss_dssp             EECCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSC
T ss_pred             EECCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcC
Confidence            445667788999999999998543222   478998  232110       0       111   122233458999999


Q ss_pred             CCCCCEEEEEEEE
Q psy11701         95 EFSDQGSYTCEVS  107 (745)
Q Consensus        95 ~~~d~G~Y~C~~~  107 (745)
                      +.+|+|.|.|.+.
T Consensus        83 ~~~Dsa~YyCa~~   95 (117)
T d1dqta_          83 RAVDTGLYLCKVE   95 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccCEeEEEEEe
Confidence            9999999999885

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.86  E-value=4.7e-05  Score=57.34  Aligned_cols=76  Identities=18%  Similarity=0.251  Sum_probs=44.8

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCCC---eEeccCCc--EEEEccCCCCCCEEEEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSDR---ISQGNYGK--SLIIKHVEFSDQGSYTC  104 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~~---~~~~~~~~--~L~i~~~~~~d~G~Y~C  104 (745)
                      +|...+.++..  ...|+..+|.|.+.|+ |. ..|+|++||..+..+..   .....++.  .+....+..++...|+|
T Consensus         4 ~P~V~l~~~~~--~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC   81 (98)
T d1d5mb1           4 YPEVTVYPAKT--QPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTC   81 (98)
T ss_dssp             CCEEEEEEC----------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEE
T ss_pred             CCEEEEECCCc--cccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEE
Confidence            46665555554  3446778999999887 43 38999999999864321   12222221  23333556777789999


Q ss_pred             EEEeC
Q psy11701        105 EVSNG  109 (745)
Q Consensus       105 ~~~~~  109 (745)
                      .|.+.
T Consensus        82 ~V~H~   86 (98)
T d1d5mb1          82 QVEHP   86 (98)
T ss_dssp             EEECT
T ss_pred             EEEEC
Confidence            99875

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.86  E-value=2.1e-05  Score=59.82  Aligned_cols=73  Identities=18%  Similarity=0.315  Sum_probs=51.1

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEE--CCEe------cC-C----------CCCeEecc--CCc--EEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSK--DGVP------IN-P----------SDRISQGN--YGK--SLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~--~~~~------i~-~----------~~~~~~~~--~~~--~L~   90 (745)
                      .+.++....+.+|++|+|+|.+.|+.  .-.+.|+|  .|+.      |. .          ..|+.+..  ...  .|.
T Consensus         3 ~L~esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~   82 (117)
T d1iqdb1           3 QLVQSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYME   82 (117)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             cEEeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEe
Confidence            45666677899999999999999864  33578887  2221      11 1          23454432  222  599


Q ss_pred             EccCCCCCCEEEEEEEEe
Q psy11701         91 IKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~  108 (745)
                      |++++.+|++.|.|....
T Consensus        83 i~~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          83 LSSLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             ECSCCGGGCEEEEEEECS
T ss_pred             ecccCcCcceEEEEeEcC
Confidence            999999999999998753

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=9.6e-06  Score=62.85  Aligned_cols=71  Identities=24%  Similarity=0.291  Sum_probs=48.4

Q ss_pred             eEeeCCCeEEEEEEEeecCC----CeEEEEeCCEeccCCC---------CCCcee---ecCceEEEccCCCCCCEEEEEE
Q psy11701        135 INAAEEETVTFECKASGLPE----PEIHWVHNGKPISQAP---------PNPRRK---VGPNRITIENLRKSDTGNYGCN  198 (745)
Q Consensus       135 ~~v~~G~~~~l~C~~~~~p~----~~v~W~~~g~~~~~~~---------~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~  198 (745)
                      .+...|++++|.|.......    ..+.|.+++..+....         ...+..   .++.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            45789999999998754221    3688888876542110         011111   1355899999999999999999


Q ss_pred             EEeCCce
Q psy11701        199 ATNSLGY  205 (745)
Q Consensus       199 ~~~~~g~  205 (745)
                      +.+..+.
T Consensus        84 V~~~~~~   90 (105)
T d1dr9a1          84 VLKYEKD   90 (105)
T ss_dssp             EEECCTT
T ss_pred             EEeCCCC
Confidence            9865443

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.84  E-value=3e-05  Score=59.48  Aligned_cols=70  Identities=21%  Similarity=0.290  Sum_probs=47.6

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------------CCCCeEec--cCCcEEEEccCCCCCCE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------------PSDRISQG--NYGKSLIIKHVEFSDQG  100 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------------~~~~~~~~--~~~~~L~i~~~~~~d~G  100 (745)
                      ...|..+.+.+|++|+|.|..... ...+.|||.  ++...            ...++...  ....+|.|.+++.+|+|
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   82 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAA   82 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCC
Confidence            345777889999999999987533 336889973  21110            01223222  22347999999999999


Q ss_pred             EEEEEEE
Q psy11701        101 SYTCEVS  107 (745)
Q Consensus       101 ~Y~C~~~  107 (745)
                      .|.|...
T Consensus        83 ~YyCa~~   89 (104)
T d1yqvl1          83 TYYCQQW   89 (104)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9999764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.84  E-value=9.4e-06  Score=62.82  Aligned_cols=73  Identities=27%  Similarity=0.363  Sum_probs=50.2

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CE---ecc------CCCCCCceee----cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GK---PIS------QAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~---~~~------~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      ++..|....+.+|++++|.|.........+.||+.  |+   .+-      ......++..    ....|.|.+++.+|+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC
Confidence            45568888899999999999987655557999982  22   110      1111112211    234799999999999


Q ss_pred             EEEEEEEE
Q psy11701        193 GNYGCNAT  200 (745)
Q Consensus       193 G~Y~C~~~  200 (745)
                      |.|.|.+.
T Consensus        84 a~YyCA~~   91 (109)
T d1mqkl_          84 GSYYCQHH   91 (109)
T ss_dssp             EEEEEEEC
T ss_pred             eeEEEeee
Confidence            99999865

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.84  E-value=3.3e-05  Score=60.35  Aligned_cols=72  Identities=18%  Similarity=0.296  Sum_probs=48.4

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC------CC----CCe-E-e---ccCCcEEEEccCCCCCC
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN------PS----DRI-S-Q---GNYGKSLIIKHVEFSDQ   99 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~------~~----~~~-~-~---~~~~~~L~i~~~~~~d~   99 (745)
                      ...|..+.+.+|++++|.|..... ...+.|||.  +..+.      ..    ... . +   .....+|.|.+++.+|+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            455778889999999999998643 347899982  21110      00    000 0 0   11123799999999999


Q ss_pred             EEEEEEEEeC
Q psy11701        100 GSYTCEVSNG  109 (745)
Q Consensus       100 G~Y~C~~~~~  109 (745)
                      |.|.|.+...
T Consensus        84 a~YyCa~~~~   93 (113)
T d1h5ba_          84 GTYFCAAEAS   93 (113)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEEecCC
Confidence            9999998653

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.83  E-value=2e-05  Score=62.00  Aligned_cols=76  Identities=18%  Similarity=0.271  Sum_probs=51.2

Q ss_pred             EEecCceeEeeCCCeEEEEEEEee-cCCCeEEEEe--CCEe---cc---------CCCCCCceee------cCceEEEcc
Q psy11701        128 FTVEPEFINAAEEETVTFECKASG-LPEPEIHWVH--NGKP---IS---------QAPPNPRRKV------GPNRITIEN  186 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~--~g~~---~~---------~~~~~~~~~~------~~~~L~i~~  186 (745)
                      +...|....+.+|++++|.|.... .....+.||+  .|+.   +-         ......++..      ....|+|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            456678888999999999999865 3456899997  1211   10         0001122221      123799999


Q ss_pred             CCCCCCEEEEEEEEeCC
Q psy11701        187 LRKSDTGNYGCNATNSL  203 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~  203 (745)
                      ++.+|+|.|.|.+....
T Consensus        83 ~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             CCGGGCEEEEEEEECTT
T ss_pred             ccccccccceeeEecCC
Confidence            99999999999887543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.83  E-value=3.8e-05  Score=59.59  Aligned_cols=75  Identities=17%  Similarity=0.310  Sum_probs=49.8

Q ss_pred             EEecCceeEeeCCCeEEEEEEEee--cCCCeEEEEeC--CEecc-CCCCCCceee------cCceEEEccCCCCCCEEEE
Q psy11701        128 FTVEPEFINAAEEETVTFECKASG--LPEPEIHWVHN--GKPIS-QAPPNPRRKV------GPNRITIENLRKSDTGNYG  196 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~--g~~~~-~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~  196 (745)
                      +...|....+.+|++++|.|...+  .....+.||+.  |+... ......+...      ....|+|.++..+|+|.|.
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence            345677888899999999998865  34468999982  11110 0001112211      1237999999999999999


Q ss_pred             EEEEeC
Q psy11701        197 CNATNS  202 (745)
Q Consensus       197 C~~~~~  202 (745)
                      |.+...
T Consensus        82 CA~~~~   87 (112)
T d1sq2n_          82 CGLGVA   87 (112)
T ss_dssp             EEECBT
T ss_pred             EEEecC
Confidence            987644

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4.6e-05  Score=56.71  Aligned_cols=63  Identities=22%  Similarity=0.360  Sum_probs=41.1

Q ss_pred             cCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCC----eEeccCCc--EEEEccCCCCCCEEEEEEEEeC
Q psy11701         47 RNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDR----ISQGNYGK--SLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        47 ~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~----~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .++.++|.|.+.|+ |.. .|+|++||+++.....    ......+.  ....-.+...+...|+|.+.+.
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence            56789999999996 544 8999999999864321    22222221  1122233445666899999875

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=9.6e-06  Score=62.60  Aligned_cols=71  Identities=25%  Similarity=0.427  Sum_probs=48.1

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--C---Eecc------CCCCCCceee----cCceEEEccCCCCCCEE
Q psy11701        130 VEPEFINAAEEETVTFECKASGLPEPEIHWVHN--G---KPIS------QAPPNPRRKV----GPNRITIENLRKSDTGN  194 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g---~~~~------~~~~~~~~~~----~~~~L~i~~v~~~d~G~  194 (745)
                      .+|....+.+|++++|.|...+.....+.||+.  |   +.+.      ......++..    ....|.|.+++.+|+|.
T Consensus         5 tQp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1lk3l1           5 TQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAI   84 (106)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCC
Confidence            345567889999999999997655567999972  1   1111      0111122221    23579999999999999


Q ss_pred             EEEEEE
Q psy11701        195 YGCNAT  200 (745)
Q Consensus       195 Y~C~~~  200 (745)
                      |.|...
T Consensus        85 YyCa~~   90 (106)
T d1lk3l1          85 YFCQQS   90 (106)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            999654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=6.1e-06  Score=61.50  Aligned_cols=72  Identities=17%  Similarity=0.317  Sum_probs=52.1

Q ss_pred             ecCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCCceeecCceEEEccCCCCCCEEEEEEEE
Q psy11701        124 AAPYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNPRRKVGPNRITIENLRKSDTGNYGCNAT  200 (745)
Q Consensus       124 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  200 (745)
                      .+|.+...|.. .|..|++|+|.|.... ....+.|+|+|.......   ........+.|.+++..|+|.|+|...
T Consensus         3 pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~---~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPGP-EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQR---GYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESCS-EEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEE---EECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCCC-cccCCCcEEEEECCCC-CCCEEEEEECCCccceee---cCCCceeEEEecccChhcCceEEEEeE
Confidence            46777777764 5889999999998754 556899999876432110   011123479999999999999999754

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.81  E-value=6.9e-05  Score=58.29  Aligned_cols=72  Identities=24%  Similarity=0.406  Sum_probs=48.0

Q ss_pred             EecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEec-------------cCCCCCCceee-----cCceEEEccCC
Q psy11701        129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPI-------------SQAPPNPRRKV-----GPNRITIENLR  188 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~-------------~~~~~~~~~~~-----~~~~L~i~~v~  188 (745)
                      ...|....+.+|++++|.|.... ....+.||+.  |+.+             .......++..     ....|+|.++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   81 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAE   81 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCC
T ss_pred             EECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcc
Confidence            34577888999999999998644 3347899972  2111             11111222222     12479999999


Q ss_pred             CCCCEEEEEEEEe
Q psy11701        189 KSDTGNYGCNATN  201 (745)
Q Consensus       189 ~~d~G~Y~C~~~~  201 (745)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (111)
T d2esve1          82 LEDSGVYFCASSQ   94 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCceEEEeeeC
Confidence            9999999998653

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.81  E-value=1.3e-05  Score=62.93  Aligned_cols=71  Identities=20%  Similarity=0.208  Sum_probs=49.0

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEe---cC---------CCCCeEec--cCCcEEEEccCCCCCCEE
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVP---IN---------PSDRISQG--NYGKSLIIKHVEFSDQGS  101 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~---i~---------~~~~~~~~--~~~~~L~i~~~~~~d~G~  101 (745)
                      ..|..+.+.+|++++|.|...+.-...+.|||.  ++.   |-         ...++...  .....|.|.+++.+|+|.
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence            346677899999999999886554456899983  221   11         12333322  222479999999999999


Q ss_pred             EEEEEEe
Q psy11701        102 YTCEVSN  108 (745)
Q Consensus       102 Y~C~~~~  108 (745)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (119)
T d1f3rb2          86 YFCYQYN   92 (119)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9997653

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=4.5e-05  Score=57.12  Aligned_cols=63  Identities=24%  Similarity=0.408  Sum_probs=41.0

Q ss_pred             cCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCCeEe--ccCCc--EEEEccCCCCCCEEEEEEEEeC
Q psy11701         47 RNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDRISQ--GNYGK--SLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        47 ~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~~~~--~~~~~--~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .|+.++|.|.+.|+ |.. .|.|.+||+.+........  ..++.  ......+...+...|+|.|...
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~   82 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHS   82 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEET
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEEC
Confidence            58899999999997 543 8999999998864322221  11221  1222233455556899999875

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.80  E-value=4.6e-05  Score=59.49  Aligned_cols=70  Identities=26%  Similarity=0.324  Sum_probs=48.0

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEEC--CEecC----------------CCCCeEecc---CCcEEEEccCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSKD--GVPIN----------------PSDRISQGN---YGKSLIIKHVEF   96 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~~--~~~i~----------------~~~~~~~~~---~~~~L~i~~~~~   96 (745)
                      ..|....+.+|++++|.|.... ....+.|||.  ++.+.                ..+++....   ....|+|.+++.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence            4567778999999999998642 3447899982  22110                122333221   224799999999


Q ss_pred             CCCEEEEEEEEe
Q psy11701         97 SDQGSYTCEVSN  108 (745)
Q Consensus        97 ~d~G~Y~C~~~~  108 (745)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (112)
T d1kgce1          83 EDSAVYLCASSL   94 (112)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCEEEEEeeeC
Confidence            999999999864

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.80  E-value=3.5e-05  Score=59.48  Aligned_cols=71  Identities=18%  Similarity=0.405  Sum_probs=48.4

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCC----CeeEEEEC--CEecC--------------C--CCCeEeccC--C--cEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPL----PQTIWSKD--GVPIN--------------P--SDRISQGNY--G--KSLI   90 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~----~~v~W~~~--~~~i~--------------~--~~~~~~~~~--~--~~L~   90 (745)
                      +.++....+.+|++|+|.|.+.|+..    ..+.|+|.  |+.+.              +  ..|+.+..+  .  ..|.
T Consensus         4 L~qsg~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~   83 (120)
T d2agjh1           4 LKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLT   83 (120)
T ss_dssp             EECCCCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEE
T ss_pred             EEeECCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeee
Confidence            44444556888999999999987632    35789972  32211              0  245554322  1  3699


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      |.+++.+|++.|.|...
T Consensus        84 i~~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          84 LTNLDPVDTATYYCART  100 (120)
T ss_dssp             EESCCGGGCEEEEEEEE
T ss_pred             EEeeeeccceEEeeEec
Confidence            99999999999999754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.79  E-value=5.2e-05  Score=57.96  Aligned_cols=72  Identities=19%  Similarity=0.302  Sum_probs=50.5

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCC--eeEEEEC--CEe------cCC----------CCCeEeccCC----cEEEEc
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLP--QTIWSKD--GVP------INP----------SDRISQGNYG----KSLIIK   92 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~--~v~W~~~--~~~------i~~----------~~~~~~~~~~----~~L~i~   92 (745)
                      +.+.-...+.+|++++|.|.+.|+...  .+.|+|.  |+.      |..          ..|+.+..+.    -.|.|.
T Consensus         3 l~esg~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~   82 (119)
T d1kxvc_           3 LVESGGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMD   82 (119)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEEC
T ss_pred             eeeECCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccc
Confidence            455566678999999999999987543  5789873  221      111          2355543322    269999


Q ss_pred             cCCCCCCEEEEEEEEe
Q psy11701         93 HVEFSDQGSYTCEVSN  108 (745)
Q Consensus        93 ~~~~~d~G~Y~C~~~~  108 (745)
                      +++.+|++.|.|....
T Consensus        83 ~L~~eDtA~YYCAr~~   98 (119)
T d1kxvc_          83 SLKPDDTAMYYCKPSL   98 (119)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             cCCcCCcceEeeeecc
Confidence            9999999999997654

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.78  E-value=7.9e-05  Score=56.07  Aligned_cols=75  Identities=15%  Similarity=0.277  Sum_probs=48.3

Q ss_pred             CCCCCeeEeeccceeEecCCcEEEEEEEeec-CC-CeeEEEECCEecCCCC---CeEeccCC-----cEEEEccCCCCCC
Q psy11701         30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGT-PL-PQTIWSKDGVPINPSD---RISQGNYG-----KSLIIKHVEFSDQ   99 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-~~v~W~~~~~~i~~~~---~~~~~~~~-----~~L~i~~~~~~d~   99 (745)
                      ..+|...+..+..  +..|...+|.|.+.|+ |. ..|+|.+||+++..+.   ......++     +.|.+.   .++.
T Consensus         3 ~~~P~V~v~~~~~--~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~   77 (99)
T d1uvqa1           3 NEVPEVTVFSKSP--VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---PSAD   77 (99)
T ss_dssp             CCCCEEEEEESSC--CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEC---CCTT
T ss_pred             CcCCEEEEEcCCc--ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEc---CCCC
Confidence            3456665544443  4568899999999998 43 3899999999987431   12222222     134443   4455


Q ss_pred             EEEEEEEEeC
Q psy11701        100 GSYTCEVSNG  109 (745)
Q Consensus       100 G~Y~C~~~~~  109 (745)
                      ..|+|+|.+.
T Consensus        78 ~~ytC~V~H~   87 (99)
T d1uvqa1          78 EIYDCKVEHW   87 (99)
T ss_dssp             CCEEEEEECT
T ss_pred             CEEEEEEEeC
Confidence            6899999875

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.78  E-value=3.8e-05  Score=60.74  Aligned_cols=68  Identities=24%  Similarity=0.438  Sum_probs=47.2

Q ss_pred             cceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEecC-----------------CCCCeEecc--C--CcEEEEccCC
Q psy11701         41 KKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVPIN-----------------PSDRISQGN--Y--GKSLIIKHVE   95 (745)
Q Consensus        41 ~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~i~-----------------~~~~~~~~~--~--~~~L~i~~~~   95 (745)
                      ..+.+.+|++++|.|.+.|..  ...+.|||.  |+.+.                 ..+|+....  .  ...|.|.+++
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            346678999999999998753  336889982  22110                 123554432  2  2369999999


Q ss_pred             CCCCEEEEEEEEe
Q psy11701         96 FSDQGSYTCEVSN  108 (745)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (745)
                      .+|+|.|.|.+..
T Consensus        89 ~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          89 KQDIATYYCALWE  101 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeeeC
Confidence            9999999999754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.78  E-value=2.8e-05  Score=58.99  Aligned_cols=71  Identities=21%  Similarity=0.302  Sum_probs=49.8

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEE--CCEe------cCC-----------CCCeEeccC--C--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSK--DGVP------INP-----------SDRISQGNY--G--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~--~~~~------i~~-----------~~~~~~~~~--~--~~L~   90 (745)
                      .+.++-...+.+|++++|.|.+.|+.  ...+.|+|  .|+.      |..           ..|+.+..+  .  -.|.
T Consensus         3 ~L~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~   82 (118)
T d1nlbh1           3 QLVQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQ   82 (118)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEE
T ss_pred             cEEeECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEee
Confidence            45677777899999999999998864  33688987  2321      211           234444322  2  2589


Q ss_pred             EccCCCCCCEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEV  106 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~  106 (745)
                      |.+++.+|++.|.|..
T Consensus        83 ~~~L~~eDtAvYYCAr   98 (118)
T d1nlbh1          83 INSLKNEDTATYFCAR   98 (118)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             eeecccCcceEEEEee
Confidence            9999999999999964

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.78  E-value=7e-05  Score=56.58  Aligned_cols=73  Identities=21%  Similarity=0.326  Sum_probs=46.8

Q ss_pred             CCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCC---CeEeccCC-----cEEEEccCCCCCCEE
Q psy11701         32 APKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSD---RISQGNYG-----KSLIIKHVEFSDQGS  101 (745)
Q Consensus        32 ~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~---~~~~~~~~-----~~L~i~~~~~~d~G~  101 (745)
                      +|...+.++..  +..|+..+|.|.+.|+ |.. .|.|.+||+++..+.   ......++     +.|.+.   ..+...
T Consensus         5 ~P~V~v~~~~~--~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~   79 (101)
T d1fnga1           5 APEVTVLSRSP--VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTDDF   79 (101)
T ss_dssp             CCEEEEEESSC--CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTTCC
T ss_pred             CCeEEEeCCCc--ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCCCE
Confidence            45555444443  4568889999999888 533 899999999987431   11122222     245553   344558


Q ss_pred             EEEEEEeC
Q psy11701        102 YTCEVSNG  109 (745)
Q Consensus       102 Y~C~~~~~  109 (745)
                      |+|.+...
T Consensus        80 ytC~V~H~   87 (101)
T d1fnga1          80 YDCEVDHW   87 (101)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99999875

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=3e-05  Score=59.67  Aligned_cols=72  Identities=13%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             ccceeEecCCcEEEEEEEeec--CCCeeEEEEC--CEe----cCC-----------CCCeEeccC--C--cEEEEccCCC
Q psy11701         40 RKKEVALRNKKVELFCIFGGT--PLPQTIWSKD--GVP----INP-----------SDRISQGNY--G--KSLIIKHVEF   96 (745)
Q Consensus        40 ~~~~~v~~G~~~~l~C~~~g~--p~~~v~W~~~--~~~----i~~-----------~~~~~~~~~--~--~~L~i~~~~~   96 (745)
                      .+...+.||++|+|.|...+.  ....+.|+|.  |+.    |..           .+|+.+..+  .  -.|+|.+++.
T Consensus         2 e~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~   81 (110)
T d1u9ka_           2 EERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQV   81 (110)
T ss_dssp             CEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECcccc
Confidence            355678999999999998764  3446889983  321    110           124444322  1  2699999999


Q ss_pred             CCCEEEEEEEEeCCe
Q psy11701         97 SDQGSYTCEVSNGVG  111 (745)
Q Consensus        97 ~d~G~Y~C~~~~~~g  111 (745)
                      +|+|.|.|.......
T Consensus        82 eDsa~YyCa~~~~~~   96 (110)
T d1u9ka_          82 TDSGLYRCVIYHPPN   96 (110)
T ss_dssp             GGCEEEEEEEECTTS
T ss_pred             CCCEEEEEEEeCCCC
Confidence            999999999865433

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.1e-05  Score=60.12  Aligned_cols=81  Identities=20%  Similarity=0.396  Sum_probs=52.6

Q ss_pred             cCCCCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCC
Q psy11701         29 NRHAPKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSD   98 (745)
Q Consensus        29 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d   98 (745)
                      +..+|...+..|....+ .++.++|.|.+.|+ |.. .|.|++||+.+..+..   .....++     +.|.|.......
T Consensus         2 p~~~P~V~~~~ps~~~~-~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~   80 (102)
T d1rzfl2           2 PKAAPSVTLFPPSSEEL-QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKS   80 (102)
T ss_dssp             CCBCCEEEEECCCHHHH-HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHH
T ss_pred             cCCCCEEEEECCCHHHh-cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCC
Confidence            34567777666665544 46779999999986 433 8999999999875421   1222222     245564444333


Q ss_pred             CEEEEEEEEeCC
Q psy11701         99 QGSYTCEVSNGV  110 (745)
Q Consensus        99 ~G~Y~C~~~~~~  110 (745)
                      ...|+|.|.+..
T Consensus        81 ~~~ytC~V~H~~   92 (102)
T d1rzfl2          81 HRSYSCQVTHEG   92 (102)
T ss_dssp             SSCEEEEEEETT
T ss_pred             CCEEEEEEEECC
Confidence            457999999864

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.77  E-value=1.5e-05  Score=62.81  Aligned_cols=75  Identities=17%  Similarity=0.247  Sum_probs=50.9

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CE---ecc-CCCCC------Ccee------ecCceEEEccCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GK---PIS-QAPPN------PRRK------VGPNRITIENLRK  189 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~---~~~-~~~~~------~~~~------~~~~~L~i~~v~~  189 (745)
                      ++..|....+.+|++++|.|.........+.||+-  |+   .|- .....      .+..      .....|.|.++..
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            34557788899999999999987655568999982  21   110 00000      0111      1123699999999


Q ss_pred             CCCEEEEEEEEeC
Q psy11701        190 SDTGNYGCNATNS  202 (745)
Q Consensus       190 ~d~G~Y~C~~~~~  202 (745)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          83 SDAAEYFCAVSES   95 (115)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             cCCccceeeecCC
Confidence            9999999998754

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=7.6e-05  Score=58.40  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             eccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC------C---------CCCeEec---cCCcEEEEccCCCCC
Q psy11701         39 TRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN------P---------SDRISQG---NYGKSLIIKHVEFSD   98 (745)
Q Consensus        39 ~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~------~---------~~~~~~~---~~~~~L~i~~~~~~d   98 (745)
                      .|..+.+.+|++|+|.|... .....+.|||  .++.+.      .         ..++...   .....|.|.+++.+|
T Consensus         5 sP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   83 (114)
T ss_dssp             SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCC
Confidence            45667799999999999985 3345799998  222110      0         1112211   122369999999999


Q ss_pred             CEEEEEEEEe
Q psy11701         99 QGSYTCEVSN  108 (745)
Q Consensus        99 ~G~Y~C~~~~  108 (745)
                      +|.|.|.+..
T Consensus        84 Sa~YyCa~~~   93 (114)
T d1ogae1          84 TAFYLCASSS   93 (114)
T ss_dssp             CEEEEEEEES
T ss_pred             ceeEEEeecc
Confidence            9999998764

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=6.6e-05  Score=55.82  Aligned_cols=65  Identities=15%  Similarity=0.418  Sum_probs=42.9

Q ss_pred             CCCeEEEEEEEee-cCCC-eEEEEeCCEeccCCCCCCc--eeecCce---EEEccCCCCCCEEEEEEEEeCC
Q psy11701        139 EEETVTFECKASG-LPEP-EIHWVHNGKPISQAPPNPR--RKVGPNR---ITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       139 ~G~~~~l~C~~~~-~p~~-~v~W~~~g~~~~~~~~~~~--~~~~~~~---L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .++.++|.|.+.| +|.. .++|++||+.+........  ...++++   .....+...+...|+|++.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            4678899999999 4654 9999999999864322211  2223322   2233445566678999999864

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.77  E-value=3.6e-05  Score=57.53  Aligned_cols=73  Identities=19%  Similarity=0.312  Sum_probs=50.9

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCC--CeeEEEE--CCEe------cCC-------------CCCeEecc--CC--c
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPL--PQTIWSK--DGVP------INP-------------SDRISQGN--YG--K   87 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~--~~v~W~~--~~~~------i~~-------------~~~~~~~~--~~--~   87 (745)
                      ..+.++-...+.+|++++|.|.+.|...  .-+.|+|  .|+.      |..             ..|+.+..  ..  -
T Consensus         2 v~L~eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~   81 (109)
T d2ck0h1           2 VQLQESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSML   81 (109)
T ss_dssp             CEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEE
T ss_pred             CCEEeECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceecccccccee
Confidence            3456777788999999999999988643  3678887  2221      111             13554432  22  2


Q ss_pred             EEEEccCCCCCCEEEEEEEE
Q psy11701         88 SLIIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~  107 (745)
                      .|.|++++.+|++.|.|.-.
T Consensus        82 ~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          82 YLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EecccCCCHhHCEEEEEEEc
Confidence            58999999999999999853

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.77  E-value=7.5e-05  Score=56.00  Aligned_cols=63  Identities=24%  Similarity=0.254  Sum_probs=42.9

Q ss_pred             EecCCcEEEEEEEeec-C-CCeeEEEECCEecCCCCC---eEeccCC-----cEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         45 ALRNKKVELFCIFGGT-P-LPQTIWSKDGVPINPSDR---ISQGNYG-----KSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        45 v~~G~~~~l~C~~~g~-p-~~~v~W~~~~~~i~~~~~---~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      +..++.++|.|.+.|+ | ...|+|.+||+.+..+..   .....++     +.|.|   ..++...|+|.+.+..
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTYTCVVEHIG   86 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEEEEEEEeCC
Confidence            5567899999999988 4 448999999999865422   2222222     13444   4455568999998753

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4e-05  Score=57.73  Aligned_cols=67  Identities=22%  Similarity=0.200  Sum_probs=43.5

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCeEe----ccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRISQ----GNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      ...|..|++|+|.|... .....+.++|+|...........    ......+.|.+++.+|+|.|+|.....
T Consensus        12 ~~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          12 SPVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             CSEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CCccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            55699999999999875 33447888998875432111000    111236899999999999999988643

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.77  E-value=2.1e-05  Score=59.06  Aligned_cols=61  Identities=23%  Similarity=0.429  Sum_probs=42.6

Q ss_pred             CCcEEEEEEEeecCCCeeEEEE--CCEe---c---C-----CCCCeEec--cC--CcEEEEccCCCCCCEEEEEEEEe
Q psy11701         48 NKKVELFCIFGGTPLPQTIWSK--DGVP---I---N-----PSDRISQG--NY--GKSLIIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        48 G~~~~l~C~~~g~p~~~v~W~~--~~~~---i---~-----~~~~~~~~--~~--~~~L~i~~~~~~d~G~Y~C~~~~  108 (745)
                      |++|+|.|.........+.|||  .++.   |   .     ...++...  ..  ..+|.|.+++.+|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            8899999998766666899998  2211   1   1     11233321  22  23799999999999999999864

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=3.9e-05  Score=60.09  Aligned_cols=70  Identities=21%  Similarity=0.298  Sum_probs=48.2

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC---------------CCCCeEec---cCCcEEEEccCCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN---------------PSDRISQG---NYGKSLIIKHVEFS   97 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~---------------~~~~~~~~---~~~~~L~i~~~~~~   97 (745)
                      ..|....+.+|++|+|.|...+. ...+.|||  .++.+.               ...++...   .....|+|.+++.+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence            45677889999999999987433 34789998  222211               11222221   12347999999999


Q ss_pred             CCEEEEEEEEe
Q psy11701         98 DQGSYTCEVSN  108 (745)
Q Consensus        98 d~G~Y~C~~~~  108 (745)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCA~~~   93 (113)
T d2ntsp1          83 DSALYLCASSL   93 (113)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceeeeeeeeC
Confidence            99999998864

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=7e-06  Score=63.77  Aligned_cols=80  Identities=15%  Similarity=0.281  Sum_probs=55.9

Q ss_pred             CCCCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCCeEe-------ccCC-----cEEEEccCC
Q psy11701         30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDRISQ-------GNYG-----KSLIIKHVE   95 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~~~~-------~~~~-----~~L~i~~~~   95 (745)
                      ..+|...+..|....+..|+.++|.|.+.|+ |.. .|+|++||+.+........       ..++     +.|.|..-.
T Consensus         2 ~~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~   81 (108)
T d1ow0a2           2 TFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAED   81 (108)
T ss_dssp             CCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHH
T ss_pred             CCCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHH
Confidence            3568887777877778889999999999886 543 8999999999875433211       1111     245665444


Q ss_pred             CCCCEEEEEEEEeC
Q psy11701         96 FSDQGSYTCEVSNG  109 (745)
Q Consensus        96 ~~d~G~Y~C~~~~~  109 (745)
                      ......|+|.|.+.
T Consensus        82 w~~g~~ytC~V~H~   95 (108)
T d1ow0a2          82 WKKGDTFSCMVGHE   95 (108)
T ss_dssp             HHHTCCEEEEEECT
T ss_pred             hCCCCEEEEEEEeC
Confidence            44455899999874

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.76  E-value=4.6e-05  Score=58.29  Aligned_cols=71  Identities=20%  Similarity=0.286  Sum_probs=50.3

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCC--eeEEEE--CCEec------CC----------CCCeEecc--CC--cEEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLP--QTIWSK--DGVPI------NP----------SDRISQGN--YG--KSLII   91 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~--~v~W~~--~~~~i------~~----------~~~~~~~~--~~--~~L~i   91 (745)
                      ++.++-...+.+|++++|.|.+.|+...  .+.|+|  .|+.+      ..          ..|+.+..  ..  -.|.|
T Consensus         3 qL~esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i   82 (120)
T d1dn0b1           3 QLQQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKL   82 (120)
T ss_dssp             EEEEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             eEEeECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccc
Confidence            3556667789999999999999987543  578987  23221      11          24555432  22  25999


Q ss_pred             ccCCCCCCEEEEEEE
Q psy11701         92 KHVEFSDQGSYTCEV  106 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~  106 (745)
                      ++++.+|++.|.|..
T Consensus        83 ~~l~~eDtA~YYCAr   97 (120)
T d1dn0b1          83 SSVTAADTAVYYCAR   97 (120)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccccccccEEEEEe
Confidence            999999999999954

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=8.6e-05  Score=57.54  Aligned_cols=72  Identities=18%  Similarity=0.361  Sum_probs=46.2

Q ss_pred             CceeEeeCCCeEEEEEEEeec--CCCeEEEEeCC--Ee---c-c-----CCCCCCceee------cCceEEEccCCCCCC
Q psy11701        132 PEFINAAEEETVTFECKASGL--PEPEIHWVHNG--KP---I-S-----QAPPNPRRKV------GPNRITIENLRKSDT  192 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~g--~~---~-~-----~~~~~~~~~~------~~~~L~i~~v~~~d~  192 (745)
                      +......+|++++|.|.....  ....+.|+|..  ..   + .     ......+...      ....|.|.+++.+|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            445678899999999987542  22367898731  11   1 0     0111122211      124799999999999


Q ss_pred             EEEEEEEEeCC
Q psy11701        193 GNYGCNATNSL  203 (745)
Q Consensus       193 G~Y~C~~~~~~  203 (745)
                      |.|.|.+....
T Consensus        83 G~Y~C~v~~~~   93 (108)
T d1hkfa_          83 GHYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEEEecCC
Confidence            99999988554

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.76  E-value=4.4e-05  Score=57.99  Aligned_cols=72  Identities=18%  Similarity=0.248  Sum_probs=50.6

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCC--eeEEEE--CCEec------CC----------CCCeEecc--CC--cEEEEc
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLP--QTIWSK--DGVPI------NP----------SDRISQGN--YG--KSLIIK   92 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~--~v~W~~--~~~~i------~~----------~~~~~~~~--~~--~~L~i~   92 (745)
                      +.++-...+.+|++++|.|.+.|+...  .+.|+|  .|+.+      ..          ..|+.+..  ..  -.|.|+
T Consensus         4 L~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~   83 (116)
T d7fabh1           4 LEQSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLS   83 (116)
T ss_dssp             EEEECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EEeECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccc
Confidence            456666778999999999999987533  688987  23221      11          23444432  22  269999


Q ss_pred             cCCCCCCEEEEEEEEe
Q psy11701         93 HVEFSDQGSYTCEVSN  108 (745)
Q Consensus        93 ~~~~~d~G~Y~C~~~~  108 (745)
                      +++.+|++.|.|....
T Consensus        84 ~L~~eDtAvYyCAr~~   99 (116)
T d7fabh1          84 SVTAADTAVYYCARNL   99 (116)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccccccceEEEeeeec
Confidence            9999999999998653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.76  E-value=3.7e-05  Score=59.97  Aligned_cols=70  Identities=20%  Similarity=0.288  Sum_probs=47.7

Q ss_pred             eeccceeEecCCcEEEEEEEeec---C---CCeeEEEEC--CEec------------CCCCCeEec--cCCcEEEEccCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGT---P---LPQTIWSKD--GVPI------------NPSDRISQG--NYGKSLIIKHVE   95 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~---p---~~~v~W~~~--~~~i------------~~~~~~~~~--~~~~~L~i~~~~   95 (745)
                      ..|..+.+.+|++|+|.|...+.   .   ...+.|||.  |+.+            ...+++...  .....|.|.+++
T Consensus         6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~   85 (113)
T d1q9ra1           6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQ   85 (113)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccc
Confidence            45778889999999999987532   1   124889982  2211            112333322  223479999999


Q ss_pred             CCCCEEEEEEEE
Q psy11701         96 FSDQGSYTCEVS  107 (745)
Q Consensus        96 ~~d~G~Y~C~~~  107 (745)
                      .+|+|.|.|.+.
T Consensus        86 ~~Dsa~YyCA~~   97 (113)
T d1q9ra1          86 AEDLAVYYCKQS   97 (113)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCCCeEEEeccc
Confidence            999999999864

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.75  E-value=7.1e-05  Score=56.14  Aligned_cols=78  Identities=23%  Similarity=0.328  Sum_probs=48.4

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeec-C-CCeEEEEeCCEeccCCCCCC-ceeecCceEE---EccCCCCCCEEEEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGL-P-EPEIHWVHNGKPISQAPPNP-RRKVGPNRIT---IENLRKSDTGNYGCN  198 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~-p-~~~v~W~~~g~~~~~~~~~~-~~~~~~~~L~---i~~v~~~d~G~Y~C~  198 (745)
                      +|.+.+.+.. ....++.++|.|.+.|+ | ...++|.+||+.+....... .....++++.   ...+..++...|+|.
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~   81 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCV   81 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEE
Confidence            4554443222 24567889999999994 4 45999999999886443222 2222333221   223445566689999


Q ss_pred             EEeCC
Q psy11701        199 ATNSL  203 (745)
Q Consensus       199 ~~~~~  203 (745)
                      +.+..
T Consensus        82 V~H~s   86 (98)
T d1hdmb1          82 VEHIG   86 (98)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            99864

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=4.7e-05  Score=59.47  Aligned_cols=68  Identities=21%  Similarity=0.340  Sum_probs=42.4

Q ss_pred             eEeeCCCeEEEEEEEeecCC---CeEE--EEeCCEec----------cC---CCCCCcee--ecCceEEEccCCCCCCEE
Q psy11701        135 INAAEEETVTFECKASGLPE---PEIH--WVHNGKPI----------SQ---APPNPRRK--VGPNRITIENLRKSDTGN  194 (745)
Q Consensus       135 ~~v~~G~~~~l~C~~~~~p~---~~v~--W~~~g~~~----------~~---~~~~~~~~--~~~~~L~i~~v~~~d~G~  194 (745)
                      +....|++++|+|.....+.   ..+.  |.++....          ..   .....+..  .++.+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            45678999999999864222   2344  44432211          00   01111111  245689999999999999


Q ss_pred             EEEEEEeC
Q psy11701        195 YGCNATNS  202 (745)
Q Consensus       195 Y~C~~~~~  202 (745)
                      |.|.+...
T Consensus        84 Y~C~V~~~   91 (110)
T d1ncna_          84 YQCIIHHK   91 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99999743

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=7.4e-05  Score=59.22  Aligned_cols=74  Identities=15%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             cCceeEeeCCCeEEEEEEEee---cC---CCeEEEEeCCEe----c--------cCCCCCCceee------cCceEEEcc
Q psy11701        131 EPEFINAAEEETVTFECKASG---LP---EPEIHWVHNGKP----I--------SQAPPNPRRKV------GPNRITIEN  186 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~---~p---~~~v~W~~~g~~----~--------~~~~~~~~~~~------~~~~L~i~~  186 (745)
                      .|....+.+|++|+|.|....   .+   ...+.|++....    +        .......+...      .+.+|+|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            467788999999999999852   11   125667773221    1        01111222222      234799999


Q ss_pred             CCCCCCEEEEEEEEeCCc
Q psy11701        187 LRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       187 v~~~d~G~Y~C~~~~~~g  204 (745)
                      ++.+|+|.|.|.+....+
T Consensus        86 v~~~DsG~Y~C~v~~~~~  103 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISDS  103 (118)
T ss_dssp             CCGGGCEEEEEEEECC-C
T ss_pred             CChhHCEEEEEEEEeCCC
Confidence            999999999999976543

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.74  E-value=1.3e-05  Score=62.12  Aligned_cols=73  Identities=22%  Similarity=0.325  Sum_probs=48.9

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeec-CCCeEEEEeC--CE---ecc------CCCCCCceee----cCceEEEccCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGL-PEPEIHWVHN--GK---PIS------QAPPNPRRKV----GPNRITIENLRKSD  191 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~--g~---~~~------~~~~~~~~~~----~~~~L~i~~v~~~d  191 (745)
                      ++..|....+.+|++++|.|..... ....+.||+.  |+   .+-      ......++..    ....|.|.++..+|
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D   83 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED   83 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence            4456888889999999999987643 3346899983  22   111      0011112211    22479999999999


Q ss_pred             CEEEEEEEE
Q psy11701        192 TGNYGCNAT  200 (745)
Q Consensus       192 ~G~Y~C~~~  200 (745)
                      +|.|.|.+.
T Consensus        84 sa~YyCa~~   92 (108)
T d2fx7l1          84 FAVYYCQQY   92 (108)
T ss_dssp             CSEEEEEEC
T ss_pred             cEEEeeecC
Confidence            999999764

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.74  E-value=4.1e-05  Score=59.48  Aligned_cols=72  Identities=21%  Similarity=0.369  Sum_probs=48.1

Q ss_pred             cCceeEeeCCCeEEEEEEEeec--CCCeEEEEeCC--Ee---cc------CCCCCCceee----cCceEEEccCCCCCCE
Q psy11701        131 EPEFINAAEEETVTFECKASGL--PEPEIHWVHNG--KP---IS------QAPPNPRRKV----GPNRITIENLRKSDTG  193 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~g--~~---~~------~~~~~~~~~~----~~~~L~i~~v~~~d~G  193 (745)
                      +|....+.+|++++|.|...+.  ....+.||+..  +.   +.      ......++..    ....|.|.+++.+|++
T Consensus         6 Q~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA   85 (114)
T d2rhea_           6 QPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEA   85 (114)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cCCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCc
Confidence            3446788999999999998763  34579999831  11   10      0111112221    2357999999999999


Q ss_pred             EEEEEEEeC
Q psy11701        194 NYGCNATNS  202 (745)
Q Consensus       194 ~Y~C~~~~~  202 (745)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (114)
T d2rhea_          86 DYYCAAWND   94 (114)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEeecCC
Confidence            999987643

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.74  E-value=3.7e-05  Score=58.32  Aligned_cols=72  Identities=17%  Similarity=0.306  Sum_probs=50.2

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCC--eeEEEEC--CEec------CC----------CCCeEecc--CC--cEEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLP--QTIWSKD--GVPI------NP----------SDRISQGN--YG--KSLII   91 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~--~v~W~~~--~~~i------~~----------~~~~~~~~--~~--~~L~i   91 (745)
                      .+.++-...+.+|++++|.|.+.|+...  .+.|+|.  |+.+      ..          ..|+.+..  ..  -.|.|
T Consensus         3 ~L~esG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~   82 (116)
T d1a2yb_           3 QLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKM   82 (116)
T ss_dssp             EEEEECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEE
T ss_pred             CEEeECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcce
Confidence            4566677789999999999999987533  5778872  3221      11          12344332  22  25999


Q ss_pred             ccCCCCCCEEEEEEEE
Q psy11701         92 KHVEFSDQGSYTCEVS  107 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~  107 (745)
                      ++++.+|++.|.|.-.
T Consensus        83 ~~l~~eDTAvYYCAr~   98 (116)
T d1a2yb_          83 NSLHTDDTARYYCARE   98 (116)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eeeeeccceEEEEEEe
Confidence            9999999999999864

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=4.4e-05  Score=57.80  Aligned_cols=71  Identities=18%  Similarity=0.362  Sum_probs=50.2

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCC--CeeEEEE--CCEec------CC----------CCCeEeccC--C--cEEEEc
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPL--PQTIWSK--DGVPI------NP----------SDRISQGNY--G--KSLIIK   92 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~--~~v~W~~--~~~~i------~~----------~~~~~~~~~--~--~~L~i~   92 (745)
                      +.++-...+.+|++++|.|.+.|...  ..+.|+|  .|+.+      ..          ..|+.+..+  .  -.|.|+
T Consensus         4 L~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~   83 (117)
T d1c5db1           4 LLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMN   83 (117)
T ss_dssp             EEEECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEEC
T ss_pred             EeeECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccc
Confidence            45666677999999999999998754  3688987  33322      11          235544322  2  269999


Q ss_pred             cCCCCCCEEEEEEEE
Q psy11701         93 HVEFSDQGSYTCEVS  107 (745)
Q Consensus        93 ~~~~~d~G~Y~C~~~  107 (745)
                      +++.+|++.|.|...
T Consensus        84 sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          84 SLQTEDTAIYFCTRE   98 (117)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccccCcceEEEEecc
Confidence            999999999999654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.1e-05  Score=57.41  Aligned_cols=65  Identities=17%  Similarity=0.415  Sum_probs=44.3

Q ss_pred             CCCeEEEEEEEee-cCCCeEEEEeCCEeccCCCCCCceeecC------ceEEEccCCCCCCEEEEEEEEeCCceE
Q psy11701        139 EEETVTFECKASG-LPEPEIHWVHNGKPISQAPPNPRRKVGP------NRITIENLRKSDTGNYGCNATNSLGYV  206 (745)
Q Consensus       139 ~G~~~~l~C~~~~-~p~~~v~W~~~g~~~~~~~~~~~~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~g~~  206 (745)
                      .|+.++|.|.+.| +|.+.|+|++||+.+............+      +.|.|.   ..+...|+|.+.+..-..
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCC
Confidence            5788999999987 7888999999998886432211111112      245443   345678999999876543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.5e-05  Score=60.21  Aligned_cols=71  Identities=14%  Similarity=0.182  Sum_probs=47.1

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCC---eeEEEEC--CEecC-------CC-------CC---eEeccCCcEEEEccCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLP---QTIWSKD--GVPIN-------PS-------DR---ISQGNYGKSLIIKHVE   95 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~---~v~W~~~--~~~i~-------~~-------~~---~~~~~~~~~L~i~~~~   95 (745)
                      .+|..+.+.+|++|+|.|........   .+.|+|.  ++...       ..       .+   .........|.|.+++
T Consensus         4 tQP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~   83 (118)
T d1i8lc_           4 AQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR   83 (118)
T ss_dssp             ECCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCC
T ss_pred             eCCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccc
Confidence            45666778999999999998533322   4889983  22110       00       11   1122223479999999


Q ss_pred             CCCCEEEEEEEEe
Q psy11701         96 FSDQGSYTCEVSN  108 (745)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (745)
                      .+|+|.|.|.+..
T Consensus        84 ~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          84 AMDTGLYICKVEL   96 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCCEEEEEeEec
Confidence            9999999998853

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.73  E-value=7.5e-05  Score=56.98  Aligned_cols=72  Identities=17%  Similarity=0.260  Sum_probs=50.3

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC--CeeEEEE--CCEec------C-C----------CCCeEeccC--Cc--EEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL--PQTIWSK--DGVPI------N-P----------SDRISQGNY--GK--SLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~--~~v~W~~--~~~~i------~-~----------~~~~~~~~~--~~--~L~   90 (745)
                      ++.+.-...+.+|++++|.|.+.|+..  .-+.|+|  .|+.+      . .          ..|+.+..+  ..  .|.
T Consensus         3 qL~eSG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq   82 (121)
T d2p49b1           3 QLVESGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQ   82 (121)
T ss_dssp             EEEEEECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEE
T ss_pred             ceeeECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEE
Confidence            456666778999999999999988743  3678987  22211      1 1          235554332  22  589


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      |++++.+|++.|.|...
T Consensus        83 ~~~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          83 MDSLKPEDTATYYCAAG   99 (121)
T ss_dssp             ECSCCGGGCEEEEEEES
T ss_pred             eeeccccceeEEeeecc
Confidence            99999999999999863

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.73  E-value=4.5e-05  Score=58.14  Aligned_cols=73  Identities=21%  Similarity=0.267  Sum_probs=51.4

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCC---eeEEEE--CCEec------CC----------CCCeEeccC--C--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLP---QTIWSK--DGVPI------NP----------SDRISQGNY--G--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~---~v~W~~--~~~~i------~~----------~~~~~~~~~--~--~~L~   90 (745)
                      ++.++-...+.+|++++|.|.+.|+...   .+.|+|  .|+.+      ..          ..|+.+..+  .  -.|.
T Consensus         3 qL~esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~   82 (119)
T d1ncwh1           3 QLQQSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQ   82 (119)
T ss_dssp             EEEEESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             cEEeECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecc
Confidence            4567777789999999999999987643   467877  33322      11          234444322  2  2599


Q ss_pred             EccCCCCCCEEEEEEEEe
Q psy11701         91 IKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~  108 (745)
                      |.+++.+|++.|.|....
T Consensus        83 ~~sL~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          83 LNSVTTEDTATYYCAGLL  100 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEE
T ss_pred             ccccccCCceEEEEeEec
Confidence            999999999999997643

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.73  E-value=1.8e-05  Score=61.40  Aligned_cols=74  Identities=27%  Similarity=0.373  Sum_probs=50.1

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CE---ecc------CCCCCCceee----cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GK---PIS------QAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~---~~~------~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      +...|....+.+|++++|.|...+.....+.||+.  |+   .+.      ......++..    ....|.|.+++.+|+
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence            44557788899999999999987655557899982  11   111      0011122221    224799999999999


Q ss_pred             EEEEEEEEe
Q psy11701        193 GNYGCNATN  201 (745)
Q Consensus       193 G~Y~C~~~~  201 (745)
                      |.|.|.+..
T Consensus        86 a~YyCA~~~   94 (109)
T d1bwwa_          86 ATYYCQQYQ   94 (109)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEeecC
Confidence            999997653

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.73  E-value=1.9e-05  Score=60.95  Aligned_cols=74  Identities=28%  Similarity=0.370  Sum_probs=50.3

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEe---cc------CCCCCCceee----cCceEEEccCCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKP---IS------QAPPNPRRKV----GPNRITIENLRKSDT  192 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~---~~------~~~~~~~~~~----~~~~L~i~~v~~~d~  192 (745)
                      ++..|....+.+|++++|.|.........+.||+.  +..   +-      ......++..    .+..|.|.++..+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC
Confidence            44567788899999999999986655567899972  111   10      0111122221    235899999999999


Q ss_pred             EEEEEEEEe
Q psy11701        193 GNYGCNATN  201 (745)
Q Consensus       193 G~Y~C~~~~  201 (745)
                      |.|.|....
T Consensus        84 a~YyCa~~~   92 (107)
T d1d5il1          84 GIYYCLQYD   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecc
Confidence            999997643

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.72  E-value=3.9e-05  Score=57.89  Aligned_cols=72  Identities=17%  Similarity=0.253  Sum_probs=50.9

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCC--eeEEEE--CCEec------C-C----------CCCeEecc--CC--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLP--QTIWSK--DGVPI------N-P----------SDRISQGN--YG--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~--~v~W~~--~~~~i------~-~----------~~~~~~~~--~~--~~L~   90 (745)
                      ++.++....+.+|+++.|.|.+.|+...  -+.|.|  .|+.|      . .          ..|+.+..  ..  -.|.
T Consensus         3 qL~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~   82 (116)
T d1mjuh1           3 QLQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQ   82 (116)
T ss_dssp             EEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             EEeeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEec
Confidence            4667778889999999999999987533  577887  23211      1 1          23555432  22  2588


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      |.+++.+|++.|.|.-.
T Consensus        83 ~~sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          83 LSSLTSDDSAVYYCANK   99 (116)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccCCCCceEEEEccc
Confidence            99999999999999754

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.72  E-value=5.2e-05  Score=57.66  Aligned_cols=71  Identities=17%  Similarity=0.184  Sum_probs=49.7

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEE--CCEec------C---------C--CCCeEecc--CC--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSK--DGVPI------N---------P--SDRISQGN--YG--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~--~~~~i------~---------~--~~~~~~~~--~~--~~L~   90 (745)
                      .+.++....+.+|++++|.|.+.|+.  ..-+.|+|  .|+.+      .         +  ..|+.+..  ..  ..|.
T Consensus         3 ~L~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~   82 (117)
T d1mfah1           3 QVQQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYME   82 (117)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             eEEeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEee
Confidence            46677788899999999999998864  33577876  23211      1         0  22444422  22  2589


Q ss_pred             EccCCCCCCEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEV  106 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~  106 (745)
                      |.+++.+|++.|.|.-
T Consensus        83 i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          83 LSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             ecccCCCcceEEEEec
Confidence            9999999999999975

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.72  E-value=3.7e-05  Score=58.44  Aligned_cols=72  Identities=15%  Similarity=0.238  Sum_probs=50.6

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCC--eeEEEE--CCEe------cCC-----------CCCeEeccC--C--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLP--QTIWSK--DGVP------INP-----------SDRISQGNY--G--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~--~v~W~~--~~~~------i~~-----------~~~~~~~~~--~--~~L~   90 (745)
                      .+.++....+.+|+++.|.|.+.|+...  .+.|+|  .|+.      |..           ..|+.+..+  .  ..|.
T Consensus         3 ~L~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~   82 (118)
T d2jelh1           3 QLAQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYME   82 (118)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEE
T ss_pred             ceEeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeec
Confidence            4667777889999999999999887533  678887  2321      111           134444322  2  2599


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      |++++.+|++.|.|.-.
T Consensus        83 ~~sL~~eDTAvYYCAr~   99 (118)
T d2jelh1          83 LARLTSEDSAIYYCARV   99 (118)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccccCcceeeeEEEe
Confidence            99999999999999643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.72  E-value=4.8e-05  Score=57.59  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=50.2

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEEC--CEe------cC-C----------CCCeEeccC--C--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSKD--GVP------IN-P----------SDRISQGNY--G--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~------i~-~----------~~~~~~~~~--~--~~L~   90 (745)
                      .+.++-...+.+|++++|.|.+.|..  ...+.|+|.  |+.      |. .          ..|+.+..+  .  -.|.
T Consensus         3 ~L~esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~   82 (117)
T d1jpth1           3 QLVESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQ   82 (117)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             eEeeECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEec
Confidence            35666777899999999999999875  336888872  221      11 1          234444322  2  2589


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      +.+++.+|++.|.|...
T Consensus        83 m~~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          83 MNSLRAEDTAVYYCARD   99 (117)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccCCCCceEEEEeec
Confidence            99999999999999754

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.72  E-value=3.8e-05  Score=59.06  Aligned_cols=72  Identities=18%  Similarity=0.310  Sum_probs=49.9

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEE--CCEec------CC-----------CCCeEec--cCC--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSK--DGVPI------NP-----------SDRISQG--NYG--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~--~~~~i------~~-----------~~~~~~~--~~~--~~L~   90 (745)
                      .+.++-...+.+|++|+|.|.+.|..  ...+.|+|  .|+.+      ..           ..|+.+.  ...  ..|.
T Consensus         3 ~L~esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~   82 (119)
T d1qnzh_           3 QLQQSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLE   82 (119)
T ss_dssp             EEEEECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred             ceEeECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeee
Confidence            45666677899999999999998764  33578987  23221      10           2345442  222  2599


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      |.+++.+|++.|.|...
T Consensus        83 i~~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          83 FSRLTSDDSAVYYCAIH   99 (119)
T ss_dssp             EEEECGGGCEEEEEEEC
T ss_pred             ecccCccceeEEEEEEe
Confidence            99999999999999764

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.72  E-value=7.3e-05  Score=56.86  Aligned_cols=74  Identities=18%  Similarity=0.293  Sum_probs=51.8

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCC--eeEEEE--CCEe------cCC-----------CCCeEeccC--Cc--EEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLP--QTIWSK--DGVP------INP-----------SDRISQGNY--GK--SLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~--~v~W~~--~~~~------i~~-----------~~~~~~~~~--~~--~L~   90 (745)
                      ++.+.-...+.+|++++|.|.+.|+...  .+.|+|  .|+.      |..           ..|+.+..+  ..  .|.
T Consensus         3 qL~eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~   82 (118)
T d2fbjh1           3 KLLESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQ   82 (118)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEE
T ss_pred             eEeeECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeecc
Confidence            4566777789999999999999987533  578886  2321      111           234444322  22  589


Q ss_pred             EccCCCCCCEEEEEEEEeC
Q psy11701         91 IKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~  109 (745)
                      |++++.+|++.|.|.....
T Consensus        83 ~~sL~~eDtAvYYCAr~~~  101 (118)
T d2fbjh1          83 MSKVRSEDTALYYCARLHY  101 (118)
T ss_dssp             ECSCCGGGCEEEEEEEEET
T ss_pred             ccccCCCcceEEEeeEecC
Confidence            9999999999999987543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.72  E-value=1.3e-05  Score=62.64  Aligned_cols=74  Identities=18%  Similarity=0.297  Sum_probs=48.8

Q ss_pred             EecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc------CCC---CCCcee------ecCceEEEccCCCCC
Q psy11701        129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS------QAP---PNPRRK------VGPNRITIENLRKSD  191 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~------~~~---~~~~~~------~~~~~L~i~~v~~~d  191 (745)
                      ...|....+.+|++++|.|.........+.||+.  |+...      ...   ...+..      .....|.|.++..+|
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD   82 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTS
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCC
Confidence            3457778889999999999987544447999973  21110      000   000110      012479999999999


Q ss_pred             CEEEEEEEEeC
Q psy11701        192 TGNYGCNATNS  202 (745)
Q Consensus       192 ~G~Y~C~~~~~  202 (745)
                      +|.|.|.+...
T Consensus        83 sa~YyCa~~~~   93 (110)
T d1u3ha1          83 SATYFCAASAN   93 (110)
T ss_dssp             CSEEEECCEES
T ss_pred             ceeEeeeecCC
Confidence            99999987643

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.71  E-value=0.00013  Score=55.15  Aligned_cols=68  Identities=16%  Similarity=0.263  Sum_probs=45.6

Q ss_pred             eeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCceeecCceEEE---ccCCCCCCEEEEEEEEeCCc
Q psy11701        137 AAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRRKVGPNRITI---ENLRKSDTGNYGCNATNSLG  204 (745)
Q Consensus       137 v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~L~i---~~v~~~d~G~Y~C~~~~~~g  204 (745)
                      +..|+..+|.|.+.| +|. ..|.|.+||..+............++++.+   ..+..++...|+|.|.+..-
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEPD   87 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETTT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCCC
Confidence            456889999999999 454 499999999987654433333334443322   12344566679999998754

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.71  E-value=7.5e-05  Score=56.79  Aligned_cols=72  Identities=15%  Similarity=0.208  Sum_probs=50.8

Q ss_pred             EeeccceeEecCCcEEEEEEEeecCCC--eeEEEE--CCEec------C-C----------CCCeEecc--CCc--EEEE
Q psy11701         37 YVTRKKEVALRNKKVELFCIFGGTPLP--QTIWSK--DGVPI------N-P----------SDRISQGN--YGK--SLII   91 (745)
Q Consensus        37 ~~~~~~~~v~~G~~~~l~C~~~g~p~~--~v~W~~--~~~~i------~-~----------~~~~~~~~--~~~--~L~i   91 (745)
                      +.++....+.+|++++|.|.+.|+...  .+.|+|  .|+.+      . .          ..|+.+..  ...  .|.|
T Consensus         3 L~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m   82 (117)
T d1um5h1           3 LQQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLEL   82 (117)
T ss_dssp             EEECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecc
Confidence            566777889999999999999887533  688987  23221      1 1          23554422  222  5999


Q ss_pred             ccCCCCCCEEEEEEEEe
Q psy11701         92 KHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~  108 (745)
                      .+++.+|++.|.|....
T Consensus        83 ~sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          83 SSLTSEDSAVYYCARSS   99 (117)
T ss_dssp             CSCCGGGCEEEEEEEEE
T ss_pred             cccCCCcceEEEEeecc
Confidence            99999999999997643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.71  E-value=3e-05  Score=60.35  Aligned_cols=74  Identities=19%  Similarity=0.308  Sum_probs=49.7

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEec---c---------CCCCCCcee-----ecCceEEEccCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPI---S---------QAPPNPRRK-----VGPNRITIENLR  188 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~---~---------~~~~~~~~~-----~~~~~L~i~~v~  188 (745)
                      +...|....+.+|++++|.|...+ ....+.|||.  |+..   -         ......++.     .....|.|.+++
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            456688888999999999998765 3457999982  2111   0         000011111     123579999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy11701        189 KSDTGNYGCNATNS  202 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~  202 (745)
                      .+|+|.|.|.+...
T Consensus        83 ~~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          83 PSQTSVYFCASGGG   96 (110)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             HhhCEEEEEeeCCC
Confidence            99999999987643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=5.7e-05  Score=60.16  Aligned_cols=72  Identities=22%  Similarity=0.264  Sum_probs=47.1

Q ss_pred             CceeEeeCCCeEEEEEEEeec-------CCCeEEEEeCCEecc--------------CCCCCCceee------cCceEEE
Q psy11701        132 PEFINAAEEETVTFECKASGL-------PEPEIHWVHNGKPIS--------------QAPPNPRRKV------GPNRITI  184 (745)
Q Consensus       132 ~~~~~v~~G~~~~l~C~~~~~-------p~~~v~W~~~g~~~~--------------~~~~~~~~~~------~~~~L~i  184 (745)
                      |...++.+|++++|.|..+..       ....+.|++.+..-.              ......+...      .+.+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            566789999999999998521       113678988532211              0011122222      2347999


Q ss_pred             ccCCCCCCEEEEEEEEeCC
Q psy11701        185 ENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       185 ~~v~~~d~G~Y~C~~~~~~  203 (745)
                      .+++.+|+|.|.|.+....
T Consensus        88 ~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             CSCCGGGCEEEEEEEEETT
T ss_pred             CCCChHHCEEEEEEEEeCC
Confidence            9999999999999997643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.70  E-value=3.3e-05  Score=59.92  Aligned_cols=74  Identities=19%  Similarity=0.323  Sum_probs=48.6

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeec-C---CCeEEEEeC--CEec----c-----CCCCCCceee----cCceEEEccCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGL-P---EPEIHWVHN--GKPI----S-----QAPPNPRRKV----GPNRITIENLR  188 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~-p---~~~v~W~~~--g~~~----~-----~~~~~~~~~~----~~~~L~i~~v~  188 (745)
                      ++..|....+.+|++++|.|..+.. .   ...+.||+.  |+..    .     ......++..    ....|+|.+++
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~   83 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE   83 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence            4556788889999999999987541 1   225899982  2211    0     0111122221    23479999999


Q ss_pred             CCCCEEEEEEEEe
Q psy11701        189 KSDTGNYGCNATN  201 (745)
Q Consensus       189 ~~d~G~Y~C~~~~  201 (745)
                      .+|++.|.|.+..
T Consensus        84 ~~DsA~YyCa~~~   96 (111)
T d2gsia1          84 EEDAATYYCSHIR   96 (111)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccCCceEEEEECC
Confidence            9999999997653

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.70  E-value=3.3e-05  Score=59.50  Aligned_cols=72  Identities=19%  Similarity=0.423  Sum_probs=47.8

Q ss_pred             cCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEe---cc------CCCCCCceee----cCceEEEccCCCCCCEEE
Q psy11701        131 EPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKP---IS------QAPPNPRRKV----GPNRITIENLRKSDTGNY  195 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~---~~------~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y  195 (745)
                      +|....+.+|++++|.|.........+.||+.  |+.   +-      ......+...    ....|.|.+++.+|+|.|
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavY   85 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADY   85 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEE
Confidence            45567889999999999876544457899972  221   10      0001111111    234799999999999999


Q ss_pred             EEEEEeC
Q psy11701        196 GCNATNS  202 (745)
Q Consensus       196 ~C~~~~~  202 (745)
                      .|.+...
T Consensus        86 yCA~~~~   92 (109)
T d1w72l1          86 YCQVWDS   92 (109)
T ss_dssp             EEEEEET
T ss_pred             EEEecCC
Confidence            9988654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.69  E-value=4.5e-05  Score=58.07  Aligned_cols=71  Identities=18%  Similarity=0.265  Sum_probs=49.2

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEE--CCEe------cC-C----------CCCeEecc--CC--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSK--DGVP------IN-P----------SDRISQGN--YG--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~--~~~~------i~-~----------~~~~~~~~--~~--~~L~   90 (745)
                      .+.++....+.+|++++|.|.+.|..  ...+.|+|  .|+.      |. .          ..|+.+..  ..  ..|.
T Consensus         3 ~L~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~   82 (115)
T d1f3dh1           3 QLQQSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMH   82 (115)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             eEEeECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEee
Confidence            35566667799999999999998763  33688987  2322      11 1          13444432  22  2599


Q ss_pred             EccCCCCCCEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEV  106 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~  106 (745)
                      |++++.+|++.|.|..
T Consensus        83 i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          83 LNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             eeecCcCCcEEEEEec
Confidence            9999999999999965

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.69  E-value=2.6e-05  Score=58.36  Aligned_cols=67  Identities=16%  Similarity=0.205  Sum_probs=46.3

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEECCEecCCCCCe---EeccCCcEEEEccCCCCCCEEEEEEEEeC
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSKDGVPINPSDRI---SQGNYGKSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      ...|..|++|+|.|... .....+.++|+|..-......   ........+.|.+++.+|+|.|+|.....
T Consensus        10 ~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          10 GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            56799999999999975 334478899987532111111   10111236899999999999999988643

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.69  E-value=4.4e-05  Score=59.48  Aligned_cols=74  Identities=14%  Similarity=0.180  Sum_probs=49.6

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc------CC---CCCCceee------cCceEEEccCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS------QA---PPNPRRKV------GPNRITIENLRKS  190 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~------~~---~~~~~~~~------~~~~L~i~~v~~~  190 (745)
                      +...|....+.+|++++|.|.........+.||+.  |+...      ..   ....+...      ....|.|.++..+
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG   82 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence            34557778889999999999987655557899982  21110      00   00011111      1348999999999


Q ss_pred             CCEEEEEEEEe
Q psy11701        191 DTGNYGCNATN  201 (745)
Q Consensus       191 d~G~Y~C~~~~  201 (745)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCa~~~   93 (111)
T d1bd2d1          83 DSAVYFCAAME   93 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             ccEEEEeeccC
Confidence            99999998764

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.68  E-value=5.5e-05  Score=57.03  Aligned_cols=71  Identities=14%  Similarity=0.200  Sum_probs=49.7

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEE--CCEe------cC-C----------CCCeEecc--CCc--EEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSK--DGVP------IN-P----------SDRISQGN--YGK--SLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~--~~~~------i~-~----------~~~~~~~~--~~~--~L~   90 (745)
                      ++.++-...+.+|++++|.|.+.|+.  ...+.|+|  .|+.      |. .          ..|+.+..  ...  .|.
T Consensus         3 qL~eSG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~   82 (114)
T d1indh1           3 TLVESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQ   82 (114)
T ss_dssp             EEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             eEeeECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeee
Confidence            45666677899999999999998874  33677887  2221      11 1          23554432  222  599


Q ss_pred             EccCCCCCCEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEV  106 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~  106 (745)
                      |++++.+|++.|.|..
T Consensus        83 ~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          83 LNSLRSEDTALYFCAS   98 (114)
T ss_dssp             ECSCCGGGCEEEEEEC
T ss_pred             eeeeccCcccEEEECC
Confidence            9999999999999975

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.68  E-value=8.2e-05  Score=57.96  Aligned_cols=70  Identities=17%  Similarity=0.190  Sum_probs=47.3

Q ss_pred             eeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC---------------CCCCeEec---cCCcEEEEccCCCC
Q psy11701         38 VTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN---------------PSDRISQG---NYGKSLIIKHVEFS   97 (745)
Q Consensus        38 ~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~---------------~~~~~~~~---~~~~~L~i~~~~~~   97 (745)
                      ..|....+.+|++++|.|.... ....+.|||  .|+.+.               ...++...   .....|.|.+++.+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (112)
T d2bnub1           4 QTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPS   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGG
T ss_pred             ECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHH
Confidence            4567778999999999998853 344799997  222110               01112211   11237999999999


Q ss_pred             CCEEEEEEEEe
Q psy11701         98 DQGSYTCEVSN  108 (745)
Q Consensus        98 d~G~Y~C~~~~  108 (745)
                      |+|.|.|.+..
T Consensus        83 DsavYyCA~~~   93 (112)
T d2bnub1          83 QTSVYFCASSY   93 (112)
T ss_dssp             GCEEEEEEEEC
T ss_pred             HCEEEEEeecC
Confidence            99999998763

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.68  E-value=5.9e-05  Score=58.02  Aligned_cols=71  Identities=24%  Similarity=0.391  Sum_probs=50.1

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC--CeeEEEE--CCEe------cCC-----------CCCeEeccC--C--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL--PQTIWSK--DGVP------INP-----------SDRISQGNY--G--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~--~~v~W~~--~~~~------i~~-----------~~~~~~~~~--~--~~L~   90 (745)
                      .+.++-...+.+|+++.|.|.+.|+..  ..+.|+|  .|+.      |..           ..|+.+..+  .  -.|.
T Consensus         3 ~L~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~   82 (127)
T d1n0xh1           3 QLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYME   82 (127)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             cEEeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEE
Confidence            456777788999999999999998643  3678887  2322      111           234444322  2  2588


Q ss_pred             EccCCCCCCEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEV  106 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~  106 (745)
                      |.+++.+|++.|.|.-
T Consensus        83 ~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          83 LRSLRSADTAVYYCAR   98 (127)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             EEccCCCCceEEEEEe
Confidence            9999999999999974

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.6e-05  Score=59.83  Aligned_cols=80  Identities=15%  Similarity=0.270  Sum_probs=52.3

Q ss_pred             CCCCCeeEeeccceeEecCCcEEEEEEEeec-C-CCeeEEEECCEecCCCCCe----EeccCC-----cEEEEccCCCCC
Q psy11701         30 RHAPKQQYVTRKKEVALRNKKVELFCIFGGT-P-LPQTIWSKDGVPINPSDRI----SQGNYG-----KSLIIKHVEFSD   98 (745)
Q Consensus        30 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p-~~~v~W~~~~~~i~~~~~~----~~~~~~-----~~L~i~~~~~~d   98 (745)
                      +.+|...+..|... ...++.++|.|.+.|+ | ...|.|++||+.+......    ....++     +.|.|..-....
T Consensus         2 ~~~P~V~v~~p~~~-~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~   80 (105)
T d1fp5a2           2 RAAPEVYAFATPEW-PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQ   80 (105)
T ss_dssp             CBCCEEEEEECCCC-SSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTT
T ss_pred             CCCCEEEEECCChH-HhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCC
Confidence            35677766666543 3356789999999886 4 3489999999988643211    112222     256665555455


Q ss_pred             CEEEEEEEEeCC
Q psy11701         99 QGSYTCEVSNGV  110 (745)
Q Consensus        99 ~G~Y~C~~~~~~  110 (745)
                      ...|+|.|.+..
T Consensus        81 g~~ytC~V~H~~   92 (105)
T d1fp5a2          81 KDEFICRAVHEA   92 (105)
T ss_dssp             GGGEEEEEECTT
T ss_pred             CCEEEEEEEECC
Confidence            558999998753

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.68  E-value=7.6e-05  Score=56.74  Aligned_cols=72  Identities=17%  Similarity=0.254  Sum_probs=49.9

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC--CeeEEEE--CCEe------cCC-----------CCCeEecc--CC--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL--PQTIWSK--DGVP------INP-----------SDRISQGN--YG--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~--~~v~W~~--~~~~------i~~-----------~~~~~~~~--~~--~~L~   90 (745)
                      .+.++-...+.+|++++|.|.+.|+..  .-+.|.|  .|+.      |..           ..|+.+..  ..  -.|.
T Consensus         3 ~L~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~   82 (118)
T d1ct8b1           3 KLLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQ   82 (118)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEE
T ss_pred             CEEeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEec
Confidence            456777788999999999999998653  3677877  2321      111           12443322  22  2688


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      |.+++.+|++.|.|...
T Consensus        83 i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          83 FSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccCCCcceEEEEeee
Confidence            99999999999999764

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.68  E-value=5.4e-05  Score=58.13  Aligned_cols=72  Identities=17%  Similarity=0.246  Sum_probs=50.4

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecC--CCeeEEEE--CCEec------C-C----------CCCeEecc--CC--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTP--LPQTIWSK--DGVPI------N-P----------SDRISQGN--YG--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~v~W~~--~~~~i------~-~----------~~~~~~~~--~~--~~L~   90 (745)
                      .+.++....+.+|++++|.|.+.|..  ...+.|+|  .|+.+      . .          ..|+.+..  ..  -.|.
T Consensus         3 ~L~qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~   82 (120)
T d1pg7x1           3 QLQQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIE   82 (120)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEeeECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcc
Confidence            35666677799999999999998764  33678987  23321      1 0          23554432  22  2599


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      |.+++.+|++.|.|...
T Consensus        83 i~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          83 LVRLTSNDSAVYYCARE   99 (120)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccCCCcceEEEeeec
Confidence            99999999999999875

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.67  E-value=2e-06  Score=64.97  Aligned_cols=69  Identities=19%  Similarity=0.359  Sum_probs=46.4

Q ss_pred             ceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC------------CCCCeEec----cCCcEEEEccCCCCCCEEEE
Q psy11701         42 KEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN------------PSDRISQG----NYGKSLIIKHVEFSDQGSYT  103 (745)
Q Consensus        42 ~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~------------~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~  103 (745)
                      .+.|.||++|+|.|..... ...+.|+|  .|+.+.            ...++...    .....|.|.+++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            3568899999999987532 34789998  233221            11233221    11236999999999999999


Q ss_pred             EEEEeCCe
Q psy11701        104 CEVSNGVG  111 (745)
Q Consensus       104 C~~~~~~g  111 (745)
                      |.+....|
T Consensus        81 CA~~~~~g   88 (96)
T d1ymmd1          81 CATDTTSG   88 (96)
T ss_dssp             EEEEETTS
T ss_pred             EeEecCCC
Confidence            99876543

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=6.6e-05  Score=57.22  Aligned_cols=67  Identities=16%  Similarity=0.366  Sum_probs=45.3

Q ss_pred             CCCeEEEEEEEeec-CC-CeEEEEeCCEeccCCCCC-CceeecC------ceEEEccCCCCCCEEEEEEEEeCCce
Q psy11701        139 EEETVTFECKASGL-PE-PEIHWVHNGKPISQAPPN-PRRKVGP------NRITIENLRKSDTGNYGCNATNSLGY  205 (745)
Q Consensus       139 ~G~~~~l~C~~~~~-p~-~~v~W~~~g~~~~~~~~~-~~~~~~~------~~L~i~~v~~~d~G~Y~C~~~~~~g~  205 (745)
                      .++.++|.|.+.|+ |. ..|+|++||+.+...... ......+      +.|.|..-.......|+|+|.+....
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~   94 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS   94 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCcc
Confidence            46789999999884 44 489999999987643221 1222222      34666655556677899999987543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.67  E-value=8e-05  Score=56.02  Aligned_cols=66  Identities=15%  Similarity=0.291  Sum_probs=41.6

Q ss_pred             eCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCC-CceeecCce---EEEccCCCCCCEEEEEEEEeCC
Q psy11701        138 AEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPN-PRRKVGPNR---ITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       138 ~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~-~~~~~~~~~---L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ..++..+|.|.+.| +|. ..++|++||..+...... .....++++   +....+..++...|+|+|.+..
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            34677889999999 444 499999999988643221 122223332   3334567788889999999864

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.66  E-value=7.3e-05  Score=58.39  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=48.4

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCCeeEEEE--CCEecC-------C--------CCCeEec---cCCcEEEEccCC
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLPQTIWSK--DGVPIN-------P--------SDRISQG---NYGKSLIIKHVE   95 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~v~W~~--~~~~i~-------~--------~~~~~~~---~~~~~L~i~~~~   95 (745)
                      +...|..+.+.+|++|+|.|... .....+.|||  .|+.+.       .        ..++...   .....|.|.+++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            34457778899999999999874 2334788998  222110       0        1122211   122479999999


Q ss_pred             CCCCEEEEEEEEe
Q psy11701         96 FSDQGSYTCEVSN  108 (745)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (745)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (113)
T d1j8he1          82 TNQTSMYLCASSS   94 (113)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCcccEEeeEcc
Confidence            9999999999864

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=7.4e-05  Score=56.63  Aligned_cols=72  Identities=18%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCC--eeEEEE--CCEec------C---------C--CCCeEeccC--Cc--EEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLP--QTIWSK--DGVPI------N---------P--SDRISQGNY--GK--SLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~--~v~W~~--~~~~i------~---------~--~~~~~~~~~--~~--~L~   90 (745)
                      .+.++-...+.+|+++.|.|.+.|+...  .+.|+|  .|+.+      .         +  ..|+.+..+  ..  .|.
T Consensus         3 qL~esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq   82 (117)
T d1jnhb1           3 QLQQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQ   82 (117)
T ss_dssp             EEEECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             EEeeECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeec
Confidence            4566777788999999999999987543  678887  22211      1         1  245554322  22  589


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      |++++.+|++.|.|...
T Consensus        83 ~~~L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          83 LNSLTSEDSAVYSCSRG   99 (117)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccCCCcceEEEEeec
Confidence            99999999999999763

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=5.7e-05  Score=58.51  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=51.0

Q ss_pred             eeEeeccceeEecCCcEEEEEEEeecCC--CeeEEEE--CCEec------C-C----------CCCeEecc--CC--cEE
Q psy11701         35 QQYVTRKKEVALRNKKVELFCIFGGTPL--PQTIWSK--DGVPI------N-P----------SDRISQGN--YG--KSL   89 (745)
Q Consensus        35 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~--~~v~W~~--~~~~i------~-~----------~~~~~~~~--~~--~~L   89 (745)
                      ..+.++-...+.+|++++|.|.+.|+..  ..+.|+|  .|+.+      . .          ..|+.+..  ..  -.|
T Consensus         2 v~L~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL   81 (125)
T d1rihh1           2 VQLQQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFM   81 (125)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             CceEeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEee
Confidence            3467777888999999999999988643  3578877  23211      1 1          23444422  22  258


Q ss_pred             EEccCCCCCCEEEEEEEE
Q psy11701         90 IIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~  107 (745)
                      .|++++.+|++.|.|...
T Consensus        82 ~l~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          82 YLNSLTSEDSAVYYCARE   99 (125)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eeeccCcccceEEEEeee
Confidence            999999999999999864

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.66  E-value=5.3e-05  Score=58.89  Aligned_cols=72  Identities=22%  Similarity=0.410  Sum_probs=47.7

Q ss_pred             cCceeEeeCCCeEEEEEEEeec--CCCeEEEEeC--CE---ecc------CCCCCCceee----cCceEEEccCCCCCCE
Q psy11701        131 EPEFINAAEEETVTFECKASGL--PEPEIHWVHN--GK---PIS------QAPPNPRRKV----GPNRITIENLRKSDTG  193 (745)
Q Consensus       131 ~~~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~--g~---~~~------~~~~~~~~~~----~~~~L~i~~v~~~d~G  193 (745)
                      +|....+.+|++++|.|...+.  ....+.||+.  +.   .+.      ......++..    ....|.|.+++.+|+|
T Consensus         6 Qp~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           6 QPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (111)
T ss_dssp             CCSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eCcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCc
Confidence            4557889999999999998653  2346999972  11   110      0011112211    2257999999999999


Q ss_pred             EEEEEEEeC
Q psy11701        194 NYGCNATNS  202 (745)
Q Consensus       194 ~Y~C~~~~~  202 (745)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (111)
T d1rzfl1          86 DYYCGTWDS   94 (111)
T ss_dssp             EEEEEEEET
T ss_pred             ceEEeecCC
Confidence            999987654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.66  E-value=7.6e-05  Score=56.37  Aligned_cols=75  Identities=20%  Similarity=0.296  Sum_probs=46.4

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCC-CceeecCc------eEEEccCCCCCCEEE
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPN-PRRKVGPN------RITIENLRKSDTGNY  195 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~-~~~~~~~~------~L~i~~v~~~d~G~Y  195 (745)
                      +|.+.+.+.. .+..|+.++|.|.+.| +|. ..++|++||+.+...... ......++      .|.+.   ..+...|
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~y   80 (101)
T d1fnga1           5 APEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTDDFY   80 (101)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTTCCE
T ss_pred             CCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCCCEE
Confidence            4555443222 2456888999999999 454 499999999988643211 11222222      34443   3455679


Q ss_pred             EEEEEeCC
Q psy11701        196 GCNATNSL  203 (745)
Q Consensus       196 ~C~~~~~~  203 (745)
                      +|.+.+..
T Consensus        81 tC~V~H~s   88 (101)
T d1fnga1          81 DCEVDHWG   88 (101)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99998864

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.66  E-value=2.1e-05  Score=62.91  Aligned_cols=79  Identities=15%  Similarity=0.259  Sum_probs=55.2

Q ss_pred             CCCCeeEeeccceeEecCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCCe----Ee----ccCC-----cEEEEccCC
Q psy11701         31 HAPKQQYVTRKKEVALRNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDRI----SQ----GNYG-----KSLIIKHVE   95 (745)
Q Consensus        31 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~~----~~----~~~~-----~~L~i~~~~   95 (745)
                      .+|...+..|....+..+..++|.|.+.|+ |.. .|+|++||+.+..+...    ..    ..++     +.|.|..-.
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            467777777777777778999999999887 433 89999999988642110    00    0111     357776666


Q ss_pred             CCCCE-EEEEEEEeC
Q psy11701         96 FSDQG-SYTCEVSNG  109 (745)
Q Consensus        96 ~~d~G-~Y~C~~~~~  109 (745)
                      ..+.| .|+|.|.+.
T Consensus        83 W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          83 WQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HTCTTCEEEEEEEEC
T ss_pred             hCCCCCEEEEEEEEC
Confidence            66766 799999874

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.66  E-value=7.4e-05  Score=57.01  Aligned_cols=72  Identities=21%  Similarity=0.341  Sum_probs=50.5

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC--CeeEEEEC--CEe------cC-C----------CCCeEecc--CCc--EEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL--PQTIWSKD--GVP------IN-P----------SDRISQGN--YGK--SLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~--~~v~W~~~--~~~------i~-~----------~~~~~~~~--~~~--~L~   90 (745)
                      ++.++-...+.+|+++.|.|.+.|+..  -.+.|+|.  |+.      |. .          ..|+.+..  ...  .|.
T Consensus         3 qL~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLq   82 (119)
T d1rz7h1           3 QLVQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLE   82 (119)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             EEeeECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEee
Confidence            456777778999999999999998653  36888872  221      11 1          23554432  222  589


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      |.+++.+|++.|.|...
T Consensus        83 m~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          83 LSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             ECSCCGGGCEEEEEEEC
T ss_pred             eeccCcccceEEEEeec
Confidence            99999999999999764

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.65  E-value=4.6e-05  Score=59.78  Aligned_cols=76  Identities=18%  Similarity=0.236  Sum_probs=49.6

Q ss_pred             EEecCceeEeeCCCeEEEEEEEee-cCCCeEEEEeC--CEecc------CCCCC----Cc--eee----cCceEEEccCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASG-LPEPEIHWVHN--GKPIS------QAPPN----PR--RKV----GPNRITIENLR  188 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~--g~~~~------~~~~~----~~--~~~----~~~~L~i~~v~  188 (745)
                      ++..|....+.+|++|+|.|.... .....+.||+.  |....      .....    .+  ...    ....|.|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            455677888999999999998754 33446889982  22111      00000    00  111    12479999999


Q ss_pred             CCCCEEEEEEEEeCC
Q psy11701        189 KSDTGNYGCNATNSL  203 (745)
Q Consensus       189 ~~d~G~Y~C~~~~~~  203 (745)
                      .+|+|.|.|.+....
T Consensus        83 ~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          83 VVDSAVYFCALSGFY   97 (114)
T ss_dssp             GGGCEEEEEEEECSB
T ss_pred             cccCCCceEeCCCCC
Confidence            999999999876543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.65  E-value=8e-05  Score=57.74  Aligned_cols=76  Identities=17%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEec---c-CCCC-----CCceee------cCceEEEccCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPI---S-QAPP-----NPRRKV------GPNRITIENLRKS  190 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~---~-~~~~-----~~~~~~------~~~~L~i~~v~~~  190 (745)
                      +...|....+.+|++++|.|.........+.||+.  |+.+   . ....     ..++..      ....|.|.++..+
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            45567788899999999999876544457999982  2211   0 0000     011111      1347999999999


Q ss_pred             CCEEEEEEEEeCC
Q psy11701        191 DTGNYGCNATNSL  203 (745)
Q Consensus       191 d~G~Y~C~~~~~~  203 (745)
                      |+|.|.|.+....
T Consensus        83 Dsa~YyCA~~~~~   95 (110)
T d1ac6a_          83 DSAVYYCALSGGN   95 (110)
T ss_dssp             GCEEEEEEEEETT
T ss_pred             CCcccceeecCCC
Confidence            9999999876543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.64  E-value=4e-05  Score=59.85  Aligned_cols=75  Identities=17%  Similarity=0.363  Sum_probs=49.2

Q ss_pred             EEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEecc------CCC-CCCc-------eeecCceEEEccCCCCC
Q psy11701        128 FTVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKPIS------QAP-PNPR-------RKVGPNRITIENLRKSD  191 (745)
Q Consensus       128 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~~~------~~~-~~~~-------~~~~~~~L~i~~v~~~d  191 (745)
                      +...|....+.+|++++|.|..+. ....+.||+.  |..+.      ... ....       .......|.|.++..+|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            345577888999999999999865 3457999982  11110      000 0000       00112479999999999


Q ss_pred             CEEEEEEEEeCC
Q psy11701        192 TGNYGCNATNSL  203 (745)
Q Consensus       192 ~G~Y~C~~~~~~  203 (745)
                      +|.|.|.+....
T Consensus        83 sa~YyCa~~~~~   94 (113)
T d1h5ba_          83 SGTYFCAAEASS   94 (113)
T ss_dssp             CEEEEEEEECSS
T ss_pred             CEEEEEEecCCC
Confidence            999999887543

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.0001  Score=55.14  Aligned_cols=66  Identities=21%  Similarity=0.387  Sum_probs=43.1

Q ss_pred             eCCCeEEEEEEEee-cCC-CeEEEEeCCEeccCCCCCCceeecCce---EEEccCCCCCCEEEEEEEEeCC
Q psy11701        138 AEEETVTFECKASG-LPE-PEIHWVHNGKPISQAPPNPRRKVGPNR---ITIENLRKSDTGNYGCNATNSL  203 (745)
Q Consensus       138 ~~G~~~~l~C~~~~-~p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~---L~i~~v~~~d~G~Y~C~~~~~~  203 (745)
                      ..|+.++|.|.+.| +|. ..|+|.+||..+............+++   .....+...+...|+|+|.+..
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            35889999999999 555 499999999987643222112222222   2233345566668999999864

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.64  E-value=8.3e-05  Score=57.30  Aligned_cols=72  Identities=21%  Similarity=0.278  Sum_probs=50.3

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC--CeeEEEE--CCEec------C-C----------CCCeEeccC--C--cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL--PQTIWSK--DGVPI------N-P----------SDRISQGNY--G--KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~--~~v~W~~--~~~~i------~-~----------~~~~~~~~~--~--~~L~   90 (745)
                      .+.++-...+.+|+++.|+|.+.|...  ..+.|.|  .|+-+      . .          ..|+.+..+  .  -.|.
T Consensus         3 ~L~esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~   82 (127)
T d2fx7h1           3 QLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLE   82 (127)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             cEEeECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeee
Confidence            456667778899999999999998643  3578886  23221      1 0          235444322  2  2589


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      |++++.+|++.|.|...
T Consensus        83 ~~sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          83 LNSLRPEDTAVYYCARE   99 (127)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ecccCcccceEEEEeec
Confidence            99999999999999864

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.64  E-value=0.00011  Score=57.19  Aligned_cols=72  Identities=17%  Similarity=0.405  Sum_probs=48.1

Q ss_pred             EecCceeEeeCCCeEEEEEEEeecCCCeEEEEeC--CEe---c----------cCCCCCCceee-----cCceEEEccCC
Q psy11701        129 TVEPEFINAAEEETVTFECKASGLPEPEIHWVHN--GKP---I----------SQAPPNPRRKV-----GPNRITIENLR  188 (745)
Q Consensus       129 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--g~~---~----------~~~~~~~~~~~-----~~~~L~i~~v~  188 (745)
                      ...|....+.+|++++|.|.... ....+.||+.  ++.   +          .......++..     ....|+|.++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQ   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCC
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCC
Confidence            34577788899999999998653 3357899982  111   1          11111222211     13479999999


Q ss_pred             CCCCEEEEEEEEe
Q psy11701        189 KSDTGNYGCNATN  201 (745)
Q Consensus       189 ~~d~G~Y~C~~~~  201 (745)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (112)
T d1kgce1          82 QEDSAVYLCASSL   94 (112)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCEEEEEeeeC
Confidence            9999999998764

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00021  Score=53.38  Aligned_cols=61  Identities=20%  Similarity=0.408  Sum_probs=43.0

Q ss_pred             cCCcEEEEEEEee-cCCCeeEEEECCEecCCCCCeE-eccC-C-----cEEEEccCCCCCCEEEEEEEEeCC
Q psy11701         47 RNKKVELFCIFGG-TPLPQTIWSKDGVPINPSDRIS-QGNY-G-----KSLIIKHVEFSDQGSYTCEVSNGV  110 (745)
Q Consensus        47 ~G~~~~l~C~~~g-~p~~~v~W~~~~~~i~~~~~~~-~~~~-~-----~~L~i~~~~~~d~G~Y~C~~~~~~  110 (745)
                      .|+.++|.|.+.| +|.++|.|++||+.+....... .... +     +.|.|.   ..+...|+|.+.+..
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~   83 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGH   83 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETT
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecC
Confidence            5788999999977 5888999999999887443222 1222 2     245553   445679999998764

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=6.3e-05  Score=55.63  Aligned_cols=60  Identities=18%  Similarity=0.259  Sum_probs=40.1

Q ss_pred             cCCcEEEEEEEeec-CCC-eeEEEECCEecCCCCCeEeccCC------cEEEEccCCCCCCEEEEEEEEeC
Q psy11701         47 RNKKVELFCIFGGT-PLP-QTIWSKDGVPINPSDRISQGNYG------KSLIIKHVEFSDQGSYTCEVSNG  109 (745)
Q Consensus        47 ~G~~~~l~C~~~g~-p~~-~v~W~~~~~~i~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~  109 (745)
                      .+..++|.|.+.|+ |.. .|+|.+||..+.........+.+      +.|.|.   .++...|+|+|...
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~   81 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHE   81 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeC
Confidence            35689999999997 543 89999999988643222121222      245553   34556899999864

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=8.8e-05  Score=55.79  Aligned_cols=76  Identities=16%  Similarity=0.194  Sum_probs=49.7

Q ss_pred             cCeEEecCceeEeeCCCeEEEEEEEeecCCCeEEEEeCCEeccCCCCCC-cee--ecCceEEEccCCCCCCEEEEEEEEe
Q psy11701        125 APYFTVEPEFINAAEEETVTFECKASGLPEPEIHWVHNGKPISQAPPNP-RRK--VGPNRITIENLRKSDTGNYGCNATN  201 (745)
Q Consensus       125 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~g~~~~~~~~~~-~~~--~~~~~L~i~~v~~~d~G~Y~C~~~~  201 (745)
                      .|.+...|.. .|..|++|+|.|.... ....+.++|+|.......... ...  .....+.|.+++..|+|.|+|....
T Consensus         4 kPsLsa~P~~-~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2           4 KPTLSAQPSP-VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            5777777755 4899999999998753 556889999887543211000 000  1123699999999999999998764


Q ss_pred             C
Q psy11701        202 S  202 (745)
Q Consensus       202 ~  202 (745)
                      .
T Consensus        82 ~   82 (98)
T d1ugna2          82 S   82 (98)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.63  E-value=4e-05  Score=58.78  Aligned_cols=72  Identities=17%  Similarity=0.224  Sum_probs=49.6

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC--C--eeEEEE--CCEec------CC----------CCCeEecc--CC--cEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL--P--QTIWSK--DGVPI------NP----------SDRISQGN--YG--KSL   89 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~--~--~v~W~~--~~~~i------~~----------~~~~~~~~--~~--~~L   89 (745)
                      .+.++-...+.+|++++|.|.+.|+..  .  -+.|+|  .|+.+      ..          ..|+.+..  ..  -.|
T Consensus         3 ~L~esG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L   82 (120)
T d1ai1h1           3 KLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFI   82 (120)
T ss_dssp             EEEEECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEE
T ss_pred             cEEeECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeec
Confidence            345666677899999999999998743  2  477987  23222      11          13444432  22  259


Q ss_pred             EEccCCCCCCEEEEEEEE
Q psy11701         90 IIKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~  107 (745)
                      .|.+++.+|++.|.|...
T Consensus        83 ~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          83 QLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             EESSCCGGGCEEEEEEEE
T ss_pred             ceeeeeccceeEEEEEec
Confidence            999999999999999754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.63  E-value=0.00011  Score=57.60  Aligned_cols=73  Identities=18%  Similarity=0.362  Sum_probs=49.9

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCCC----eeEEEEC--CEecC----------------CCCCeEec--cCCc--EE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPLP----QTIWSKD--GVPIN----------------PSDRISQG--NYGK--SL   89 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~----~v~W~~~--~~~i~----------------~~~~~~~~--~~~~--~L   89 (745)
                      .+.++-...+.+|++++|.|.+.|+...    -+.|+|.  |+.+.                -..|+.+.  ....  .|
T Consensus         3 ~L~esg~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L   82 (132)
T d1tjgh1           3 TLKESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVL   82 (132)
T ss_dssp             EEEEECCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             eEEeECCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEc
Confidence            3455556679999999999999886422    4789872  22211                02455442  2222  59


Q ss_pred             EEccCCCCCCEEEEEEEEe
Q psy11701         90 IIKHVEFSDQGSYTCEVSN  108 (745)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~  108 (745)
                      .|++++.+|++.|.|....
T Consensus        83 ~i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          83 VMTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             ccccCCcccceEEEEEEec
Confidence            9999999999999998754

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.63  E-value=3e-05  Score=60.55  Aligned_cols=72  Identities=18%  Similarity=0.335  Sum_probs=47.8

Q ss_pred             ecCceeEeeCCCeEEEEEEEeecC-CCeEEEEeC--CEecc------C---CCCCCceee----cCceEEEccCCCCCCE
Q psy11701        130 VEPEFINAAEEETVTFECKASGLP-EPEIHWVHN--GKPIS------Q---APPNPRRKV----GPNRITIENLRKSDTG  193 (745)
Q Consensus       130 ~~~~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~--g~~~~------~---~~~~~~~~~----~~~~L~i~~v~~~d~G  193 (745)
                      .+|....+.+|++++|.|...+.. ...+.||+.  |+.+.      .   .....+...    ....|.|.++..+|+|
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence            457778899999999999986544 346899982  22111      0   000111111    1246999999999999


Q ss_pred             EEEEEEEe
Q psy11701        194 NYGCNATN  201 (745)
Q Consensus       194 ~Y~C~~~~  201 (745)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99998754

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.63  E-value=0.00015  Score=55.99  Aligned_cols=72  Identities=18%  Similarity=0.316  Sum_probs=50.3

Q ss_pred             eEeeccceeEecCCcEEEEEEEeecCC--CeeEEEE--CCEe------cCC-----------CCCeEeccCC----cEEE
Q psy11701         36 QYVTRKKEVALRNKKVELFCIFGGTPL--PQTIWSK--DGVP------INP-----------SDRISQGNYG----KSLI   90 (745)
Q Consensus        36 ~~~~~~~~~v~~G~~~~l~C~~~g~p~--~~v~W~~--~~~~------i~~-----------~~~~~~~~~~----~~L~   90 (745)
                      .+.++-...+.+|++++|.|.+.|+..  .-+.|+|  .|+.      |..           ..|+.+..+.    -.|.
T Consensus         3 qL~eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~   82 (135)
T d1ieha_           3 QLQASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQ   82 (135)
T ss_dssp             EEEEECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEE
T ss_pred             eEeeECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEec
Confidence            355666777999999999999998753  3588987  2321      111           2355543222    2599


Q ss_pred             EccCCCCCCEEEEEEEE
Q psy11701         91 IKHVEFSDQGSYTCEVS  107 (745)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (745)
                      |.+++.+|++.|.|...
T Consensus        83 i~~L~~eDTAvYYCAr~   99 (135)
T d1ieha_          83 MNSLKSEDTAVYYCAKY   99 (135)
T ss_dssp             EESCCSSSCEEEEEEEB
T ss_pred             EeeeCcccceeeEEEEe
Confidence            99999999999999764