Psyllid ID: psy11715

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MPHLFYQNETEKSLYSRSPQPHNKSYLKFFVVGKAELFHNFCGYHSITKCLLCNQCPFFNNLFTLARITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIAN
Secondary Structure (PSIPRED)
ccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccccccEEEEEEEcHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEccccccccccccccccccccEcc
Coil and Loop (DISEMBL)
mphlfyqnetekslysrspqphnksYLKFFVVGKAElfhnfcgyhsitkcllcnqcpffnnLFTLARITGCKEVMRKSAYMKMLKSSahtlplwvgkpgqkpaalvgaipadpshian
Flexible Loop (DISEMBL)
mphlfyqnetekslysrspqphNKSYLKFFVVGKAELFHNFCGYHSITKCLLCNQCPFFNNLFTLARITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPadpshian
Low Complexity Region (SEG)
MPHLFYQNETEKSLYSRSPQPHNKSYLKFFVVGKAELFHNFCGYHSITKCLLCNQCPFFNNLFTLARITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIAN
Disordered region (IsUnstruct)
************************SYLKFFVVGKAELFHNFCGYHSITKCLLCNQCPFFNNLFTLARITGCKEVMRKSAYMKMLKSSAHTLPLWVGK*********************
Disordered Region (DISOPRED)
***********************KSYLKFFVVGKAELFHNFCGYHSITKCLLC**********************RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADP*****
Disordered Region (DISEMBL)
*******************QPHNKSYLKFFVVGKAELFHNFCGYHSITKCLLCNQCPFFNNLFTLARITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIAN
Disordered Region (DISPRO)
*PHLFY**ETEKSLYSRSPQPHNKSYLKFFVVGKAELFHNFCGYHSITKCLLCNQCPFFNNLFTLARITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHI**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPHLFYQNETEKSLYSRSPQPHNKSYLKFFVVGKAELFHNFCGYHSITKCLLCNQCPFFNNLFTLARITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIAN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q9DA08	293	SAGA-associated factor 29	yes	N/A	0.389	0.156	0.521	4e-08
Q96ES7	293	SAGA-associated factor 29	yes	N/A	0.398	0.160	0.510	4e-08
P0C606	293	SAGA-associated factor 29	yes	N/A	0.389	0.156	0.521	4e-08
Q5ZL38	293	SAGA-associated factor 29	yes	N/A	0.389	0.156	0.5	2e-07

>sp|Q9DA08|SGF29_MOUSE SAGA-associated factor 29 homolog OS=Mus musculus GN=Ccdc101 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 72  KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
           ++ MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A
Sbjct: 111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVA 156

Involved in transcriptional regulation, through association with histone acetyltransferase (HAT) SAGA-type complexes like the TFTC-HAT, ATAC or STAGA complexes. Specifically recognizes and binds methylated 'Lys-4' of histone H3 (H3K4me), with a preference for trimethylated form (H3K4me3). In the SAGA-type complexes, required to recruit complexes to H3K4me. May be involved in MYC-mediated oncogenic transformation.
Mus musculus (taxid: 10090)

>sp|Q96ES7|SGF29_HUMAN SAGA-associated factor 29 homolog OS=Homo sapiens GN=CCDC101 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 32/47 (68%)

Query: 72  KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIAN 118
           ++ MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A 
Sbjct: 111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAR 157

Involved in transcriptional regulation, through association with histone acetyltransferase (HAT) SAGA-type complexes like the TFTC-HAT, ATAC or STAGA complexes. Specifically recognizes and binds methylated 'Lys-4' of histone H3 (H3K4me), with a preference for trimethylated form (H3K4me3). In the SAGA-type complexes, required to recruit complexes to H3K4me. May be involved in MYC-mediated oncogenic transformation.

Homo sapiens (taxid: 9606)

>sp|P0C606|SGF29_RAT SAGA-associated factor 29 homolog OS=Rattus norvegicus GN=Ccdc101 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 72  KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
           ++ MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A
Sbjct: 111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVA 156

Involved in transcriptional regulation, through association with histone acetyltransferase (HAT) SAGA-type complexes like the TFTC-HAT, ATAC or STAGA complexes. Specifically recognizes and binds methylated 'Lys-4' of histone H3 (H3K4me), with a preference for trimethylated form (H3K4me3). In the SAGA-type complexes, required to recruit complexes to H3K4me. May be involved in MYC-mediated oncogenic transformation.

Rattus norvegicus (taxid: 10116)

>sp|Q5ZL38|SGF29_CHICK SAGA-associated factor 29 homolog OS=Gallus gallus GN=CCDC101 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 72  KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
           ++ MR+   M +L+ SA TLPLW+GKPG KP  L GA+PA   ++A
Sbjct: 111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAMPAAGDYVA 156

Involved in transcriptional regulation, through association with histone acetyltransferase (HAT) SAGA-type complexes. Specifically recognizes and binds methylated 'Lys-4' of histone H3 (H3K4me), with a preference for the trimethylated form (H3K4me3). In the SAGA-type complexes, required to recruit complexes to H3K4me.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
321478380	287	hypothetical protein DAPPUDRAFT_190655 [	0.449	0.184	0.547	4e-10
242004474	289	conserved hypothetical protein [Pediculu	0.440	0.179	0.596	1e-09
332026007	373	SAGA-associated factor 29-like protein [	0.440	0.139	0.622	2e-09
307193718	295	SAGA-associated factor 29-like protein [	0.550	0.220	0.522	2e-09
307189508	293	SAGA-associated factor 29-like protein [	0.440	0.177	0.603	3e-09
48095098	293	PREDICTED: SAGA-associated factor 29 hom	0.440	0.177	0.622	4e-09
195026357	291	GH21249 [Drosophila grimshawi] gi|193902	0.491	0.199	0.534	5e-09
340710980	291	PREDICTED: SAGA-associated factor 29 hom	0.491	0.199	0.559	9e-09
195384317	291	GJ22385 [Drosophila virilis] gi|19414566	0.830	0.336	0.345	1e-08
158292592	288	AGAP005116-PA [Anopheles gambiae str. PE	0.440	0.180	0.596	3e-08

>gi|321478380|gb|EFX89337.1| hypothetical protein DAPPUDRAFT_190655 [Daphnia pulex]

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 66  ARITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIAN 118
           A+  G KE +R+ A MKML  +A TLPLW+ K GQ+P AL GA+PADP+++A 
Sbjct: 100 AKQAGSKETIRRGALMKMLLVTAQTLPLWISKSGQQPPALCGAVPADPTYVAK 152

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004474|ref|XP_002423108.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506054|gb|EEB10370.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 37/52 (71%)

Query: 66  ARITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
           AR  G KE +R+   MKML+ SA TLPLWVGKP +K  AL GA+PAD  +IA
Sbjct: 98  ARNAGNKETIRRGTLMKMLQGSAQTLPLWVGKPDEKAPALCGAVPADAFYIA 149

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026007|gb|EGI66158.1| SAGA-associated factor 29-like protein [Acromyrmex echinatior]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 1/53 (1%)

Query: 66  ARITGCKEVMRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIPADPSHIA 117
           AR  G KE +R+ A MKML S+A TLPL+VGK PG KP  L GAIPA+P++IA
Sbjct: 180 ARQAGNKETIRRGALMKMLLSTAQTLPLYVGKTPGGKPPPLCGAIPAEPTYIA 232

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193718|gb|EFN76400.1| SAGA-associated factor 29-like protein [Harpegnathos saltator]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 53  CNQCPFFNNLFTL-ARITGCKEVMRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIP 110
            N+     N F + ++  G KE +R+ A MKML S+A TLPL+VGK PG KP  L GAIP
Sbjct: 88  INEIRVIRNEFRIQSKNAGNKETIRRGALMKMLLSTAQTLPLYVGKTPGAKPPPLCGAIP 147

Query: 111 ADPSHIA 117
           A+PS+IA
Sbjct: 148 AEPSYIA 154

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189508|gb|EFN73885.1| SAGA-associated factor 29-like protein [Camponotus floridanus]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 66  ARITGCKEVMRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIPADPSHIA 117
           AR  G KE +R+ A MKM++S+A TLPL+VGK PG KP  L GAIPA+P++IA
Sbjct: 100 ARNAGNKETIRRGALMKMVQSTAQTLPLYVGKTPGAKPPPLCGAIPAEPTYIA 152

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48095098|ref|XP_392238.1| PREDICTED: SAGA-associated factor 29 homolog [Apis mellifera] gi|380014667|ref|XP_003691344.1| PREDICTED: SAGA-associated factor 29 homolog [Apis florea]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 1/53 (1%)

Query: 66  ARITGCKEVMRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIPADPSHIA 117
           AR  G KE +R+ A MKML S+A TLPL+VGK PG KP  L GAIPA+P++IA
Sbjct: 100 ARNAGNKETIRRGALMKMLLSTAQTLPLYVGKTPGAKPPPLCGAIPAEPTYIA 152

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195026357|ref|XP_001986238.1| GH21249 [Drosophila grimshawi] gi|193902238|gb|EDW01105.1| GH21249 [Drosophila grimshawi]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 60  NNLFTLARITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
           N     AR  G KE +R+ A MKM++ SA TLPL+VGKPG++  AL GAIPA+ S++A
Sbjct: 86  NERRIQARNAGNKEAIRRGALMKMVQLSAQTLPLFVGKPGERAPALCGAIPAESSYVA 143

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710980|ref|XP_003394060.1| PREDICTED: SAGA-associated factor 29 homolog [Bombus terrestris] gi|350400789|ref|XP_003485962.1| PREDICTED: SAGA-associated factor 29 homolog [Bombus impatiens]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 60  NNLFTLARITGCKEVMRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIPADPSHIA 117
           N     AR  G KE +R+ A MKM+ S+A TLPL+VGK PG KP  L GAIPA+P++IA
Sbjct: 93  NERRIQARNAGNKETIRRGALMKMVLSTAQTLPLYVGKTPGAKPPPLCGAIPAEPTYIA 151

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195384317|ref|XP_002050864.1| GJ22385 [Drosophila virilis] gi|194145661|gb|EDW62057.1| GJ22385 [Drosophila virilis]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 12/110 (10%)

Query: 12  KSLYSRSPQPHNKSYLKFFVVG----KAELFHNFCGYHSITKCLLCNQCPFFNNLFTLAR 67
           ++  S++P P  K+ L+  ++     +A +       H I            N     AR
Sbjct: 42  RAQQSQTPNPKLKTLLQAKILEATQEEATIRAALAKIHEIRN--------IRNERRIQAR 93

Query: 68  ITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
             G KE +R+ A MKM++ SA TLPL+VGKPG++  AL GAIPA+ +++A
Sbjct: 94  NAGNKEAIRRGALMKMVQLSAQTLPLFVGKPGERAPALCGAIPAESNYVA 143

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292592|ref|XP_313997.4| AGAP005116-PA [Anopheles gambiae str. PEST] gi|157017064|gb|EAA09403.5| AGAP005116-PA [Anopheles gambiae str. PEST]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 38/52 (73%)

Query: 66  ARITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
           AR  G KE +R+ A MKML+ SA TLPL+V KPG+K   L G+IPAD S+IA
Sbjct: 98  ARNAGNKETIRRGALMKMLQISAQTLPLFVSKPGEKIPHLCGSIPADSSYIA 149

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
FB|FBgn0050390	289	Sgf29 "SAGA-associated factor	0.440	0.179	0.538	8.9e-09
UNIPROTKB|Q96ES7	293	CCDC101 "SAGA-associated facto	0.389	0.156	0.521	1.6e-08
MGI|MGI:1922815	293	Ccdc101 "coiled-coil domain co	0.389	0.156	0.521	1.6e-08
RGD|1310609	293	Ccdc101 "coiled-coil domain co	0.389	0.156	0.521	1.6e-08
UNIPROTKB|Q5ZL38	293	CCDC101 "SAGA-associated facto	0.389	0.156	0.5	5.6e-08

FB|FBgn0050390 Sgf29 "SAGA-associated factor 29 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 136 (52.9 bits), Expect = 8.9e-09, P = 8.9e-09
 Identities = 28/52 (53%), Positives = 39/52 (75%)

Query:    66 ARITGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
             AR  G KE +R+ A MKM++ SA TLPL+VGK G++  AL GAIPA+ +++A
Sbjct:    90 ARNAGNKEAIRRGALMKMVQLSAQTLPLFVGKLGERAPALCGAIPAEGNYVA 141

GO:0005634 "nucleus" evidence=IDA

GO:0000124 "SAGA complex" evidence=IDA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0016573 "histone acetylation" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

UNIPROTKB|Q96ES7 CCDC101 "SAGA-associated factor 29 homolog" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query:    72 KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
             ++ MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A
Sbjct:   111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVA 156

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0070461 "SAGA-type complex" evidence=IDA

GO:0071169 "establishment of protein localization to chromatin" evidence=TAS

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

MGI|MGI:1922815 Ccdc101 "coiled-coil domain containing 101" [Mus musculus (taxid:10090)]

 Score = 134 (52.2 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query:    72 KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
             ++ MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A
Sbjct:   111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVA 156

GO:0005634 "nucleus" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0070461 "SAGA-type complex" evidence=ISO

RGD|1310609 Ccdc101 "coiled-coil domain containing 101" [Rattus norvegicus (taxid:10116)]

 Score = 134 (52.2 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query:    72 KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
             ++ MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A
Sbjct:   111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVA 156

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISO;ISS

GO:0043966 "histone H3 acetylation" evidence=IEA;ISO

GO:0070461 "SAGA-type complex" evidence=ISO;ISS

UNIPROTKB|Q5ZL38 CCDC101 "SAGA-associated factor 29 homolog" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query:    72 KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
             ++ MR+   M +L+ SA TLPLW+GKPG KP  L GA+PA   ++A
Sbjct:   111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAMPAAGDYVA 156


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      118       118   0.00091  102 3  11 22  0.44    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.85u 0.07s 12.92t   Elapsed:  00:00:10
  Total cpu time:  12.85u 0.07s 12.92t   Elapsed:  00:00:11
  Start:  Thu Aug 15 13:13:41 2013   End:  Thu Aug 15 13:13:52 2013

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0070461 "SAGA-type complex" evidence=ISS

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
KOG3038|consensus	264		99.16

>KOG3038|consensus

Probab=99.16  E-value=2e-11  Score=100.28  Aligned_cols=57  Identities=42%  Similarity=0.730  Sum_probs=52.9

Q ss_pred             ccchhhhhhcc----ccchhhhhHHHHHHHhhccccceeccCCCCCCCCcccccCCCCCCcc
Q psy11715         60 NNLFTLARITG----CKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA  117 (118)
Q Consensus        60 eErRiaAkiAG----prktMRRGVLMkmLQqsA~TLPLWIGKpgekPPpLCGAIPA~~~YvA  117 (118)
                      .|+.|.+.++|    +.++|||+++|.++++++.+||+|+|+++ .||++|||||++++|++
T Consensus        68 ~e~l~~~~~~~~~~~~~~~~~r~~~~el~k~~~~~lp~~~~~~~-~~p~~~gaip~~~~~~~  128 (264)
T KOG3038|consen   68 SEILITQLDLGRPEGPTGQMRRGVLMELLKQKAMTLPLWIGKPG-KPPPLCGAIPAQGDYVL  128 (264)
T ss_pred             HHHHHHHHHhcccCCccchhhhhhhhhHHhhhccccccccCCCC-CCCcccccccccCCccc
Confidence            56778888888    77899999999999999999999999999 99999999999999975

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
3me9_A	180	Crystal Structure Of Sgf29 In Complex With H3k4me3		2e-07
3mea_A	180	Crystal Structure Of The Sgf29 In Complex With H3k4		4e-05
3mew_A	159	Crystal Structure Of Novel Tudor Domain-Containing		5e-05

>pdb|3ME9|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide Length = 180

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 76  RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIAN 118
           R+     +L+ SA TLPLW+GKPG KP  L GAIPA   ++A 
Sbjct: 2   RRGVLXTLLQQSAXTLPLWIGKPGDKPPPLCGAIPASGDYVAR 44

>pdb|3MEA|A Chain A, Crystal Structure Of The Sgf29 In Complex With H3k4me3 Length = 180

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 90  TLPLWVGKPGQKPAALVGAIPADPSHIAN 118
           TLPLW+GKPG KP  L GAIPA   ++A 
Sbjct: 18  TLPLWIGKPGDKPPPLCGAIPASGDYVAR 46

>pdb|3MEW|A Chain A, Crystal Structure Of Novel Tudor Domain-Containing Protein Sgf29 Length = 159

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 90  TLPLWVGKPGQKPAALVGAIPADPSHIAN 118
           TLPLW+GKPG KP  L GAIPA   ++A 
Sbjct: 1   TLPLWIGKPGDKPPPLCGAIPASGDYVAR 29

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
3mea_A	180	SAGA-associated factor 29 homolog; structural geno	3e-07

>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A Length = 180

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 86  SSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
               TLPLW+GKPG KP  L GAIPA   ++A
Sbjct: 14  YFQGTLPLWIGKPGDKPPPLCGAIPASGDYVA 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
3mea_A	180	SAGA-associated factor 29 homolog; structural geno	99.21

>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A

Probab=99.21  E-value=4.1e-12  Score=97.20  Aligned_cols=33  Identities=55%  Similarity=0.963  Sum_probs=31.3

Q ss_pred             hhccccceeccCCCCCCCCcccccCCCCCCccC
Q psy11715         86 SSAHTLPLWVGKPGQKPAALVGAIPADPSHIAN  118 (118)
Q Consensus        86 qsA~TLPLWIGKpgekPPpLCGAIPA~~~YvAK  118 (118)
                      ++|+|||||||||+++|||||||||++++|+++
T Consensus        14 ~~~~~lplw~gk~~~~~p~lcGa~p~~~~~~~~   46 (180)
T 3mea_A           14 YFQGTLPLWIGKPGDKPPPLCGAIPASGDYVAR   46 (180)
T ss_dssp             CSTTCCCBCCCCTTCCCCTTBTTCCCCTTCCCC
T ss_pred             hcccccccccCCCCCCCCCccccccCCCCcccC
Confidence            689999999999999999999999999999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00