Psyllid ID: psy11784

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMDSSPAIMDLLLPRT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccEEEEccccccHHHHHHHcccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccEEEcccccccccccHHHcccHHHHHHccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEcccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHcccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHccccccHHHHHHHHHccccHEEEEcHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccEEEEEccccccEEEEccccEccHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccc
Coil and Loop (DISEMBL)
SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDIsprafmlssekkpwvhvipfpdtyrgefsaddpQAAQKYAQAARNIMEAHRDNIAtlicepvfvvhgavvpppgwlSLMYDYIHEIGGVViadeiqcgmgrsgshfwafqtqgavpdiitvgkpmgngmpigAVITSRKIAESLnclddnrpsgkylvrplgiNLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTslqmdsspaimdlllprt
Flexible Loop (DISEMBL)
SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFtslqmdsspaimdlllprt
Low Complexity Region (SEG)
SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMDSSPAIMDLLLPRT
Disordered region (IsUnstruct)
******ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEF**********YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM**************
Disordered Region (DISOPRED)
SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS*****************
Disordered Region (DISEMBL)
SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMDSSPAIMDLLLPRT
Disordered Region (DISPRO)
SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMDSSPAIMDLLLPR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMDSSPAIMDLLLPRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
Q8TBG4	499	Ethanolamine-phosphate ph	no	N/A	0.947	0.539	0.372	5e-52
Q6DEB1	509	Ethanolamine-phosphate ph	N/A	N/A	0.933	0.520	0.351	1e-51
Q8IUZ5	450	5-phosphohydroxy-L-lysine	no	N/A	0.936	0.591	0.357	7e-49
Q5E9S4	497	Ethanolamine-phosphate ph	yes	N/A	0.947	0.541	0.363	3e-48
Q8R1K4	467	5-phosphohydroxy-L-lysine	yes	N/A	0.943	0.573	0.347	3e-48
Q7SY54	492	Ethanolamine-phosphate ph	yes	N/A	0.947	0.546	0.365	4e-48
Q8BWU8	499	Ethanolamine-phosphate ph	no	N/A	0.961	0.547	0.350	7e-46
Q9VU95	494	Alanine--glyoxylate amino	yes	N/A	0.890	0.512	0.346	3e-42
Q9SR86	481	Alanine--glyoxylate amino	yes	N/A	0.929	0.548	0.305	1e-34
P91408	467	Alanine--glyoxylate amino	yes	N/A	0.911	0.554	0.297	1e-34

>sp|Q8TBG4|AT2L1_HUMAN Ethanolamine-phosphate phospho-lyase OS=Homo sapiens GN=AGXT2L1 PE=1 SV=1

 Score =  204 bits (520), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 171/325 (52%), Gaps = 56/325 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE-KKPWVHVIPFPD 59
           SEANDLAL+LAR + G Q+++ +D AYHG ++ L++ISP  F    + KK +VHV P PD
Sbjct: 113 SEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPD 172

Query: 60  TYRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSLM 116
           TYRG++  D   +A  YA   + I+E AH     IA  I E +    G ++PP G+   +
Sbjct: 173 TYRGKYREDHADSASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKV 232

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITS 174
            +Y+H  GGV IADE+Q G GR G HFW+FQ  G   VPDI+T+GKPMGNG P+  V+T+
Sbjct: 233 AEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTT 292

Query: 175 RKIAES----------------------LNCLD---------DNRPSGKYLVRPL----- 198
           ++IAE+                      L  LD         + +  G YL   L     
Sbjct: 293 KEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKA 352

Query: 199 ---------GINLHIFWCLILLSI-----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                    GI L I   L+   +     T        +MKE +++++ +G + NVL   
Sbjct: 353 KHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 412

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ 269
           P MC T E+  F+V  L+RI T L+
Sbjct: 413 PPMCFTEEDAKFMVDQLDRILTVLE 437

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q6DEB1|AT2L1_XENLA Ethanolamine-phosphate phospho-lyase OS=Xenopus laevis GN=agxt2l1 PE=2 SV=1

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 174/330 (52%), Gaps = 65/330 (19%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF--MLSSEKKPWVHVIPFP 58
           SEANDLAL+LAR YTG Q+++ +D AYHG V  L+DISP  F  +    +K ++HV P P
Sbjct: 113 SEANDLALRLARQYTGHQDVITLDHAYHGHVTSLIDISPYKFHQLGKDAQKEYIHVAPSP 172

Query: 59  DTYRGEFSADDPQAAQKYAQAARNIME-AHRDN--IATLICEPVFVVHGAVVPPPGWLSL 115
           DTYRG++  D P  A  YA+   +I++ AH++   IA  I E +    G ++PP G+   
Sbjct: 173 DTYRGKYREDHPDPASAYAKDVEDIIQKAHQNKRQIAAFIAESMQSCGGQIIPPAGYFQK 232

Query: 116 MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVIT 173
           + +++H+ GGV IADE+Q G GR G HFW+FQ QG   +PDI+T+GKP+GNG P+  V+T
Sbjct: 233 VSEFVHKAGGVFIADEVQVGFGRVGKHFWSFQLQGEDFLPDIVTMGKPIGNGHPMSCVVT 292

Query: 174 SRKIAES--------LNCLDDNRPS-----------------------GKYLVRPL---- 198
           +++IAE+         N    N  S                       G YL   L    
Sbjct: 293 TKEIAEAFGATGMEYFNTFGGNPVSCAIGLAVLDIIEKEDLRGNATTVGNYLTELLNEQK 352

Query: 199 ----------------GINL---HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGN 239
                           G++L    +F         + +Y+    +KE +I+++ +G Y N
Sbjct: 353 QKHPLIGDIRGVGLFVGVDLVKDRLFRTPATAEAQHIIYK----LKEKRILLSADGPYRN 408

Query: 240 VLLFLPAMCLTTENVLFIVSTLNRIFTSLQ 269
           VL F P MC   E+   +V  +++  T+L+
Sbjct: 409 VLKFKPPMCFNKEDAKLVVDEIDQCLTALE 438

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8IUZ5|AT2L2_HUMAN 5-phosphohydroxy-L-lysine phospho-lyase OS=Homo sapiens GN=AGXT2L2 PE=1 SV=1

 Score =  194 bits (492), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 169/327 (51%), Gaps = 61/327 (18%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           SEANDLAL+LAR YTG Q++VV+D AYHG ++ L+DISP  F     +K WVHV P PDT
Sbjct: 114 SEANDLALRLARHYTGHQDVVVLDHAYHGHLSSLIDISPYKFRNLDGQKEWVHVAPLPDT 173

Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRD---NIATLICEPVFVVHGAVVPPPGWLSLMY 117
           YRG +  D P  A  YA   + ++ + ++    IA    E +  V G ++PP G+ S + 
Sbjct: 174 YRGPYREDHPNPAMAYANEVKRVVSSAQEKGRKIAAFFAESLPSVGGQIIPPAGYFSQVA 233

Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
           ++I + GGV +ADEIQ G GR G HFWAFQ QG   VPDI+T+GK +GNG P+  V  ++
Sbjct: 234 EHIRKAGGVFVADEIQVGFGRVGKHFWAFQLQGKDFVPDIVTMGKSIGNGHPVACVAATQ 293

Query: 176 KIAES-------------------------LNCLDDNR------PSGKYLVRPL------ 198
            +A +                         LN L+  +        G +L++ L      
Sbjct: 294 PVARAFEATGVEYFNTFGGSPVSCAVGLAVLNVLEKEQLQDHATSVGSFLMQLLGQQKIK 353

Query: 199 --------GINLHIFWCLILLSITY--------YLYRYTRRMKEAKIIVANEGEYGNVLL 242
                   G+ L I   LI    T         YL     R+KE  ++++ +G   N+L 
Sbjct: 354 HPIVGDVRGVGLFIGVDLIKDEATRTPATEEAAYL---VSRLKENYVLLSTDGPGRNILK 410

Query: 243 FLPAMCLTTENVLFIVSTLNRIFTSLQ 269
           F P MC + +N   +V+ L+ I T ++
Sbjct: 411 FKPPMCFSLDNARQVVAKLDAILTDME 437

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q5E9S4|AT2L1_BOVIN Ethanolamine-phosphate phospho-lyase OS=Bos taurus GN=AGXT2L1 PE=2 SV=1

 Score =  192 bits (487), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 164/325 (50%), Gaps = 56/325 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE-KKPWVHVIPFPD 59
           SEANDLAL+LAR + G Q+++ +D AYHG ++ L++ISP  F    + KK +VHV P PD
Sbjct: 113 SEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPAPD 172

Query: 60  TYRGEFSADDPQAAQKYAQAARNIM-EAHRD--NIATLICEPVFVVHGAVVPPPGWLSLM 116
           TYRG++  D    A  YA   + I+ EAH     IA  I E +    G ++PP G+   +
Sbjct: 173 TYRGKYREDHVDPASAYADEVKKIIDEAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKV 232

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITS 174
            +Y+   GGV IADE+Q G GR G HFW+FQ  G   VPDI+T+GKPMGNG P+  V+T+
Sbjct: 233 AEYVRGAGGVFIADEVQVGFGRVGKHFWSFQMFGEDFVPDIVTMGKPMGNGHPMACVVTT 292

Query: 175 RKIA--------ESLNCLDDNRPS-----------------------GKYLVRPL----- 198
           ++IA        E  N    N  S                       G YL   L     
Sbjct: 293 KEIAEAFSASGMEYFNTYGGNPVSSAVGLAVLDVIKNEDLQGNATRVGNYLTELLNKQKT 352

Query: 199 ---------GINLHIFWCLI-----LLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                    G+ L I   L+         T        +MKE +++++ +G + NVL   
Sbjct: 353 KHTLIGDIRGVGLFIGIDLVKDHQQRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 412

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ 269
           P MC T E+  F+V  L+ I T L+
Sbjct: 413 PPMCFTEEDAKFMVEQLDGILTGLE 437

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8R1K4|AT2L2_MOUSE 5-phosphohydroxy-L-lysine phospho-lyase OS=Mus musculus GN=Agxt2l2 PE=2 SV=1

 Score =  191 bits (486), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 166/325 (51%), Gaps = 57/325 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           SEANDLAL+LAR YTG Q++VV+D AYHG ++ L+DISP  F     +K WVHV P PDT
Sbjct: 114 SEANDLALRLARQYTGHQDVVVLDHAYHGHLSSLIDISPYKFRNLGGQKEWVHVAPLPDT 173

Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRD---NIATLICEPVFVVHGAVVPPPGWLSLMY 117
           YRG +  D P  A+ YA   ++++ + +     IA    E +  V G ++PP G+ S + 
Sbjct: 174 YRGPYREDHPNPAEAYANEVKHVISSAQQKGRKIAAFFAESLPSVSGQIIPPAGYFSQVA 233

Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
           ++IH  GG+ +ADEIQ G GR G HFWAFQ +G   VPDI+T+GK +GNG P+  + T++
Sbjct: 234 EHIHRAGGLFVADEIQVGFGRIGKHFWAFQLEGEDFVPDIVTMGKSIGNGHPVACMATTQ 293

Query: 176 KIA--------ESLNCLDDNRPS-----------------------GKYLVRPL------ 198
            ++        E  N    N  S                       G +L+  L      
Sbjct: 294 AVSRAFEATGVEYFNTFGGNPVSCAVGLAVLDVLKTEQLQAHATNVGSFLLEHLTQQKAK 353

Query: 199 --------------GINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                         G++L     L   +     Y  +R +KE  I+++ +G   N+L F 
Sbjct: 354 HPIIGDVRGTGLFIGVDLIKDETLRTPATEEAEYLVSR-LKENYILLSIDGPGKNILKFK 412

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ 269
           P MC   +N   +V+ L+ I T ++
Sbjct: 413 PPMCFNVDNAQHVVAKLDDILTDME 437

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q7SY54|AT2L1_DANRE Ethanolamine-phosphate phospho-lyase OS=Danio rerio GN=agxt2l1 PE=2 SV=1

 Score =  191 bits (486), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 168/326 (51%), Gaps = 57/326 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF--MLSSEKKPWVHVIPFP 58
           SEANDLAL+LA  YTG ++I+ +D AYHG V+ L+DISP  F  M  +E    VHV   P
Sbjct: 114 SEANDLALRLAWQYTGHKDIITLDNAYHGHVSSLIDISPYKFHQMAGAEPSQHVHVALSP 173

Query: 59  DTYRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSL 115
           DTYRG++  D P  A  YA+  + ++E AH+    IA  I E +    G V+PP G+   
Sbjct: 174 DTYRGKYREDHPDPATAYAENVKEVIEEAHKKGHEIAAFIAESLQSCGGQVIPPMGYFQK 233

Query: 116 MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVIT 173
           +  ++   GG+ IADE+Q G GR G+HFW FQ QG   VPDI+T+GKP+GNG P+  VIT
Sbjct: 234 VAQHVRNAGGIFIADEVQVGFGRVGTHFWGFQLQGEDFVPDIVTMGKPIGNGHPMSCVIT 293

Query: 174 SRKIAES-------------------------LNCLDDNRPSGK------YLVR------ 196
           SR+IAES                         LN ++     G       YL +      
Sbjct: 294 SREIAESFMSSGMEYFNTFGGNPVSCAIGLAVLNVIEKEDLQGNALHVGGYLTQLLEDLK 353

Query: 197 ---PLGINLHIFWCLILLSITYYLYRYTRRMKEA----------KIIVANEGEYGNVLLF 243
              PL  ++      + L +     + T    EA          +I+++ +G + NVL F
Sbjct: 354 KRHPLVGDVRGRGLFVGLELVRNQSKRTPATAEAQEVIYRLKEQRILLSADGPHRNVLKF 413

Query: 244 LPAMCLTTENVLFIVSTLNRIFTSLQ 269
            P MC + E+  F V  +++I T L+
Sbjct: 414 KPPMCFSREDAEFAVEKIDQILTDLE 439

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BWU8|AT2L1_MOUSE Ethanolamine-phosphate phospho-lyase OS=Mus musculus GN=Agxt2l1 PE=2 SV=1

 Score =  184 bits (466), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 169/331 (51%), Gaps = 58/331 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE-KKPWVHVIPFPD 59
           SEANDLAL+LAR + G Q+++ +D AYHG ++ L++ISP  F    + K+  VHV P PD
Sbjct: 113 SEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKRETVHVAPAPD 172

Query: 60  TYRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSLM 116
           TYRG++  D    +  YA   + I+E AH     IA  I E +    G ++PP G+   +
Sbjct: 173 TYRGKYREDHEDPSTAYADEVKKIIEEAHSSGRKIAAFIAESMQSCGGQIIPPAGYFQKV 232

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITS 174
            ++IH+ GGV IADE+Q G GR G +FW+FQ  G   VPDI+T+GKPMGNG PI  V+T+
Sbjct: 233 AEHIHKAGGVFIADEVQVGFGRVGRYFWSFQMYGEDFVPDIVTMGKPMGNGHPISCVVTT 292

Query: 175 RKIAES--------LNCLDDNRPS-----------------------GKYLVR------- 196
           ++IAE+         N    N  S                       G YL+        
Sbjct: 293 KEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDVIEKENLQGNAVRVGTYLMELLSEQKA 352

Query: 197 --PLGINLHIFWCLILLSITYYLYRYTRRMKEAK----------IIVANEGEYGNVLLFL 244
             PL  ++      I + +     + T    EA+          ++++ +G + NVL   
Sbjct: 353 KHPLIGDIRGVGLFIGIDLVKDREKRTPATAEAQHIIYEMKGKGVLLSADGPHRNVLKIK 412

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ--MDSS 273
           P MC T ++  F+V  L+ I T L+  MDS 
Sbjct: 413 PPMCFTEDDAKFLVDHLDGILTVLEEAMDSK 443

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VU95|AGT2L_DROME Alanine--glyoxylate aminotransferase 2-like OS=Drosophila melanogaster GN=CG8745 PE=2 SV=2

 Score =  172 bits (435), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 153/312 (49%), Gaps = 59/312 (18%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF-MLSSEKKP-WVHVIPFP 58
           SEANDLAL+LAR +T RQ+++ +D AYHG +  ++++SP  F     E KP +VHV P P
Sbjct: 124 SEANDLALRLARNFTKRQDVITLDHAYHGHLQSVMEVSPYKFNQPGGEAKPDYVHVAPCP 183

Query: 59  DTYRGEFSAD---DPQAAQKYAQAARNIME---AHRDNIATLICEPVFVVHGAVVPPPGW 112
           D Y G+F+     D      YAQ    I +   A    +A  I E +    G ++PP G+
Sbjct: 184 DVYGGKFTDKMYPDADMGALYAQPIEEICQKQLAKGQGVAAFIAESLQSCGGQILPPAGY 243

Query: 113 LSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVI 172
              +YD +   GGV IADE+Q G GR GSH+WAF+TQ  +PDI+ V KPMGNG P+GAV+
Sbjct: 244 FQAVYDAVRSAGGVCIADEVQVGFGRVGSHYWAFETQNVIPDIVCVAKPMGNGHPVGAVV 303

Query: 173 TSRKIAES--------LNCLDDNRPS-----------------------GKYLVRPLGIN 201
           T+ +IA++         N    N  S                       G YL+      
Sbjct: 304 TTPEIAQAFHATGVAYFNTYGGNPVSCAIANAVMRVIEEEGLQQKALVLGDYLLEECNRL 363

Query: 202 LHIFWCL-------ILLSITYYLYRYTR------------RMKE-AKIIVANEGEYGNVL 241
              F C+       + + I     R  R            RMK+  +++V+++G   NV+
Sbjct: 364 KQEFECIGDVRGAGLFVGIELVQDRKERIPDKKAAHWVVNRMKQLHRVLVSSDGPNDNVI 423

Query: 242 LFLPAMCLTTEN 253
              P MC   EN
Sbjct: 424 KLKPPMCFNREN 435

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SR86|AGT23_ARATH Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 149/317 (47%), Gaps = 53/317 (16%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EAN+LA+ +AR YTG  +IV +  +YHG     +  + ++    +  +  VH    PD 
Sbjct: 169 TEANELAMMMARLYTGCNDIVSLRNSYHGNAAATMGATAQSNWKFNVVQSGVHHAINPDP 228

Query: 61  YRGEFSADDPQAAQKYAQAARNIME-AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDY 119
           YRG F +D     +KYA    ++++      +A  I E +  V G V   PG+L   YD 
Sbjct: 229 YRGIFGSD----GEKYASDVHDLIQFGTSGQVAGFIGESIQGVGGIVELAPGYLPAAYDI 284

Query: 120 IHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
           + + GGV IADE+Q G  R+G+HFW FQ+ G +PDI+T+ K +GNG+P+GAV+T+ +IA 
Sbjct: 285 VRKAGGVCIADEVQSGFARTGTHFWGFQSHGVIPDIVTMAKGIGNGIPLGAVVTTPEIAG 344

Query: 180 SL------NCLDDN---RPSGKYLVRPLG----------INLHIFWCLILLSITYYLYRY 220
            L      N    N     +G  ++R L           +  H+   L LL   Y L   
Sbjct: 345 VLSRRSYFNTFGGNPMCTAAGHAVLRVLHEEKLQENANLVGSHLKRRLTLLKNKYELIGD 404

Query: 221 TR-----------------------------RMKEAKIIVANEGEYGNVLLFLPAMCLTT 251
            R                             +MKE  ++V   G YGNV    P +C T 
Sbjct: 405 VRGRGLMLGVEFVKDRDLKTPAKAETLHLMDQMKEMGVLVGKGGFYGNVFRITPPLCFTL 464

Query: 252 ENVLFIVSTLNRIFTSL 268
            +  F+V  ++   + +
Sbjct: 465 SDADFLVDVMDHAMSKM 481

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|P91408|AGT2L_CAEEL Alanine--glyoxylate aminotransferase 2-like OS=Caenorhabditis elegans GN=T01B11.2 PE=2 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 160/339 (47%), Gaps = 80/339 (23%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSS--EKKPWVHVIPFP 58
           SEANDLAL+LAR YT  ++ +V++ AYHG V   +++SP  F   S   +  WVHV P P
Sbjct: 132 SEANDLALRLARDYTKHKDAIVIEHAYHGHVTTTMELSPYKFDHGSTVSQPDWVHVAPCP 191

Query: 59  DTYRGEFSADDPQ---------AAQKYAQAARNIM---EAHRDNIATLICEPVFVVHGAV 106
           D +RG+    D +         A ++Y+   ++I+   E+ +  +A    E +    G V
Sbjct: 192 DVFRGKHRLADNELTNEDKLYAAGKQYSDDVKSILNDVESRQCGVAAYFAEALQSCGGQV 251

Query: 107 VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQ--TQGAVPDIITVGKPMGN 164
           +PP  +   +  ++   GG++I DE+Q G GR G  +WA Q    G +PDI+T+GKPMGN
Sbjct: 252 IPPKDYFKDVATHVRNHGGLMIIDEVQTGFGRIGRKYWAHQLYDDGFLPDIVTMGKPMGN 311

Query: 165 GMPIGAVITSRKIAESL------------------------------NCLDDNRPSGKYL 194
           G P+ AV T ++IA++L                              N L+ ++  G+ L
Sbjct: 312 GFPVSAVATRKEIADALGGEVGYFNTYGGNPVACAAVISVMKVVKDENLLEHSQQMGEKL 371

Query: 195 ---VRPL-----------GINLHIFWCLILLSITYYLYRYTRR-------------MKEA 227
              +R L           G+ L  FW + L+       R TR               K  
Sbjct: 372 EVALRDLQKKHECIGDIRGVGL--FWGIDLVKD-----RNTREPDQKLAIATILALRKSY 424

Query: 228 KIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT 266
            I++  +G + N+L   P +C    N+L  V+ L+++ T
Sbjct: 425 GILLNADGPHTNILKIKPPLCFNENNILETVTALDQVLT 463

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
221039806	441	unnamed protein product [Homo sapiens]	0.947	0.609	0.372	2e-50
119626642	426	alanine-glyoxylate aminotransferase 2-li	0.947	0.631	0.372	2e-50
226442709	441	ethanolamine-phosphate phospho-lyase iso	0.947	0.609	0.372	2e-50
449474979	728	PREDICTED: 5-phosphohydroxy-L-lysine pho	0.954	0.372	0.361	2e-50
226442705	493	ethanolamine-phosphate phospho-lyase iso	0.947	0.545	0.372	3e-50
37574042	499	ethanolamine-phosphate phospho-lyase iso	0.947	0.539	0.372	3e-50
147905107	509	ethanolamine-phosphate phospho-lyase [Xe	0.933	0.520	0.351	6e-50
221039894	459	unnamed protein product [Homo sapiens]	0.947	0.586	0.372	6e-50
114595614	493	PREDICTED: ethanolamine-phosphate phosph	0.947	0.545	0.372	7e-50
114595612	499	PREDICTED: ethanolamine-phosphate phosph	0.947	0.539	0.372	9e-50

>gi|221039806|dbj|BAH11666.1| unnamed protein product [Homo sapiens]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 171/325 (52%), Gaps = 56/325 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE-KKPWVHVIPFPD 59
           SEANDLAL+LAR + G Q+++ +D AYHG ++ L++ISP  F    + KK +VHV P PD
Sbjct: 55  SEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPD 114

Query: 60  TYRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSLM 116
           TYRG++  D   +A  YA   + I+E AH     IA  I E +    G ++PP G+   +
Sbjct: 115 TYRGKYREDHADSASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKV 174

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITS 174
            +Y+H  GGV IADE+Q G GR G HFW+FQ  G   VPDI+T+GKPMGNG P+  V+T+
Sbjct: 175 AEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTT 234

Query: 175 RKIAES----------------------LNCLD---------DNRPSGKYLVRPL----- 198
           ++IAE+                      L  LD         + +  G YL   L     
Sbjct: 235 KEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKA 294

Query: 199 ---------GINLHIFWCLILLSI-----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                    GI L I   L+   +     T        +MKE +++++ +G + NVL   
Sbjct: 295 KHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 354

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ 269
           P MC T E+  F+V  L+RI T L+
Sbjct: 355 PPMCFTEEDAKFMVDQLDRILTVLE 379

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119626642|gb|EAX06237.1| alanine-glyoxylate aminotransferase 2-like 1, isoform CRA_c [Homo sapiens]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 171/325 (52%), Gaps = 56/325 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE-KKPWVHVIPFPD 59
           SEANDLAL+LAR + G Q+++ +D AYHG ++ L++ISP  F    + KK +VHV P PD
Sbjct: 40  SEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPD 99

Query: 60  TYRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSLM 116
           TYRG++  D   +A  YA   + I+E AH     IA  I E +    G ++PP G+   +
Sbjct: 100 TYRGKYREDHADSASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKV 159

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITS 174
            +Y+H  GGV IADE+Q G GR G HFW+FQ  G   VPDI+T+GKPMGNG P+  V+T+
Sbjct: 160 AEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTT 219

Query: 175 RKIAES----------------------LNCLD---------DNRPSGKYLVRPL----- 198
           ++IAE+                      L  LD         + +  G YL   L     
Sbjct: 220 KEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKA 279

Query: 199 ---------GINLHIFWCLILLSI-----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                    GI L I   L+   +     T        +MKE +++++ +G + NVL   
Sbjct: 280 KHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 339

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ 269
           P MC T E+  F+V  L+RI T L+
Sbjct: 340 PPMCFTEEDAKFMVDQLDRILTVLE 364

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|226442709|ref|NP_001140099.1| ethanolamine-phosphate phospho-lyase isoform 3 [Homo sapiens]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 171/325 (52%), Gaps = 56/325 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE-KKPWVHVIPFPD 59
           SEANDLAL+LAR + G Q+++ +D AYHG ++ L++ISP  F    + KK +VHV P PD
Sbjct: 55  SEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPD 114

Query: 60  TYRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSLM 116
           TYRG++  D   +A  YA   + I+E AH     IA  I E +    G ++PP G+   +
Sbjct: 115 TYRGKYREDHADSASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKV 174

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITS 174
            +Y+H  GGV IADE+Q G GR G HFW+FQ  G   VPDI+T+GKPMGNG P+  V+T+
Sbjct: 175 AEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTT 234

Query: 175 RKIAES----------------------LNCLD---------DNRPSGKYLVRPL----- 198
           ++IAE+                      L  LD         + +  G YL   L     
Sbjct: 235 KEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKA 294

Query: 199 ---------GINLHIFWCLILLSI-----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                    GI L I   L+   +     T        +MKE +++++ +G + NVL   
Sbjct: 295 KHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 354

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ 269
           P MC T E+  F+V  L+RI T L+
Sbjct: 355 PPMCFTEEDAKFMVDQLDRILTVLE 379

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449474979|ref|XP_002196038.2| PREDICTED: 5-phosphohydroxy-L-lysine phospho-lyase [Taeniopygia guttata]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 171/326 (52%), Gaps = 55/326 (16%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           SEANDLAL+LAR YT  ++++V+D AYHG +  L+DISP  F     +K WVHV P PDT
Sbjct: 399 SEANDLALRLARQYTKHEDVIVLDHAYHGHLTSLIDISPYKFRNLEGQKEWVHVAPVPDT 458

Query: 61  YRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSLMY 117
           YRG +  D   +   YA   +NI+E AH+    IA    E +  V G ++PP G+   + 
Sbjct: 459 YRGLYREDHEDSVTAYADEVKNIIEHAHKKGRKIAAFFVESLPSVGGQIIPPAGYFQKVA 518

Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
           +++H+ GGV IADEIQ G GR G HFWAFQ QG   +PDI+T+GKP+GNG P+  V T++
Sbjct: 519 EHVHKAGGVFIADEIQVGFGRVGKHFWAFQLQGEDFIPDIVTMGKPIGNGHPLACVATTK 578

Query: 176 KIAES--------LNCLDDNRPS-----------------------GKYLVRPLG----- 199
           +IAE+         N    N  S                       G +L++ L      
Sbjct: 579 EIAEAFAATGVEYFNTFGGNPVSCAIGLAVLDVIEKEHLQAHATEVGNFLMKTLKEQQIK 638

Query: 200 --INLHIFWCLILLSITYYLYRYTR------------RMKEAKIIVANEGEYGNVLLFLP 245
             I   +  C + + +     +  R            R+KE  I+++ +G   NVL F P
Sbjct: 639 HPIIGDVRGCGLFIGVDLIKDKEERTPATAEAEDLITRLKEEYILLSTDGPGRNVLKFKP 698

Query: 246 AMCLTTENVLFIVSTLNRIFTSLQMD 271
            MC   E+  F+V T+++I T ++ +
Sbjct: 699 PMCFNMEDAKFVVETIDKILTDMEKE 724

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|226442705|ref|NP_001140062.1| ethanolamine-phosphate phospho-lyase isoform 2 [Homo sapiens] gi|12274933|emb|CAC22253.1| alanine:glyoxylate aminotransferase 2 homolog 1, splice form 1 [Homo sapiens] gi|119626641|gb|EAX06236.1| alanine-glyoxylate aminotransferase 2-like 1, isoform CRA_b [Homo sapiens]

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 171/325 (52%), Gaps = 56/325 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE-KKPWVHVIPFPD 59
           SEANDLAL+LAR + G Q+++ +D AYHG ++ L++ISP  F    + KK +VHV P PD
Sbjct: 107 SEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPD 166

Query: 60  TYRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSLM 116
           TYRG++  D   +A  YA   + I+E AH     IA  I E +    G ++PP G+   +
Sbjct: 167 TYRGKYREDHADSASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKV 226

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITS 174
            +Y+H  GGV IADE+Q G GR G HFW+FQ  G   VPDI+T+GKPMGNG P+  V+T+
Sbjct: 227 AEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTT 286

Query: 175 RKIAES----------------------LNCLD---------DNRPSGKYLVRPL----- 198
           ++IAE+                      L  LD         + +  G YL   L     
Sbjct: 287 KEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKA 346

Query: 199 ---------GINLHIFWCLILLSI-----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                    GI L I   L+   +     T        +MKE +++++ +G + NVL   
Sbjct: 347 KHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 406

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ 269
           P MC T E+  F+V  L+RI T L+
Sbjct: 407 PPMCFTEEDAKFMVDQLDRILTVLE 431

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|37574042|ref|NP_112569.2| ethanolamine-phosphate phospho-lyase isoform 1 [Homo sapiens] gi|74751376|sp|Q8TBG4.1|AT2L1_HUMAN RecName: Full=Ethanolamine-phosphate phospho-lyase; AltName: Full=Alanine--glyoxylate aminotransferase 2-like 1 gi|18490698|gb|AAH22526.1| Alanine-glyoxylate aminotransferase 2-like 1 [Homo sapiens] gi|21750361|dbj|BAC03766.1| unnamed protein product [Homo sapiens] gi|63992119|gb|AAY40946.1| unknown [Homo sapiens] gi|119626640|gb|EAX06235.1| alanine-glyoxylate aminotransferase 2-like 1, isoform CRA_a [Homo sapiens]

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 171/325 (52%), Gaps = 56/325 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE-KKPWVHVIPFPD 59
           SEANDLAL+LAR + G Q+++ +D AYHG ++ L++ISP  F    + KK +VHV P PD
Sbjct: 113 SEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPD 172

Query: 60  TYRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSLM 116
           TYRG++  D   +A  YA   + I+E AH     IA  I E +    G ++PP G+   +
Sbjct: 173 TYRGKYREDHADSASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKV 232

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITS 174
            +Y+H  GGV IADE+Q G GR G HFW+FQ  G   VPDI+T+GKPMGNG P+  V+T+
Sbjct: 233 AEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTT 292

Query: 175 RKIAES----------------------LNCLD---------DNRPSGKYLVRPL----- 198
           ++IAE+                      L  LD         + +  G YL   L     
Sbjct: 293 KEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKA 352

Query: 199 ---------GINLHIFWCLILLSI-----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                    GI L I   L+   +     T        +MKE +++++ +G + NVL   
Sbjct: 353 KHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 412

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ 269
           P MC T E+  F+V  L+RI T L+
Sbjct: 413 PPMCFTEEDAKFMVDQLDRILTVLE 437

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|147905107|ref|NP_001086637.1| ethanolamine-phosphate phospho-lyase [Xenopus laevis] gi|82200144|sp|Q6DEB1.1|AT2L1_XENLA RecName: Full=Ethanolamine-phosphate phospho-lyase; AltName: Full=Alanine--glyoxylate aminotransferase 2-like 1 gi|50414567|gb|AAH77219.1| MGC79033 protein [Xenopus laevis]

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 174/330 (52%), Gaps = 65/330 (19%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF--MLSSEKKPWVHVIPFP 58
           SEANDLAL+LAR YTG Q+++ +D AYHG V  L+DISP  F  +    +K ++HV P P
Sbjct: 113 SEANDLALRLARQYTGHQDVITLDHAYHGHVTSLIDISPYKFHQLGKDAQKEYIHVAPSP 172

Query: 59  DTYRGEFSADDPQAAQKYAQAARNIME-AHRDN--IATLICEPVFVVHGAVVPPPGWLSL 115
           DTYRG++  D P  A  YA+   +I++ AH++   IA  I E +    G ++PP G+   
Sbjct: 173 DTYRGKYREDHPDPASAYAKDVEDIIQKAHQNKRQIAAFIAESMQSCGGQIIPPAGYFQK 232

Query: 116 MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVIT 173
           + +++H+ GGV IADE+Q G GR G HFW+FQ QG   +PDI+T+GKP+GNG P+  V+T
Sbjct: 233 VSEFVHKAGGVFIADEVQVGFGRVGKHFWSFQLQGEDFLPDIVTMGKPIGNGHPMSCVVT 292

Query: 174 SRKIAES--------LNCLDDNRPS-----------------------GKYLVRPL---- 198
           +++IAE+         N    N  S                       G YL   L    
Sbjct: 293 TKEIAEAFGATGMEYFNTFGGNPVSCAIGLAVLDIIEKEDLRGNATTVGNYLTELLNEQK 352

Query: 199 ----------------GINL---HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGN 239
                           G++L    +F         + +Y+    +KE +I+++ +G Y N
Sbjct: 353 QKHPLIGDIRGVGLFVGVDLVKDRLFRTPATAEAQHIIYK----LKEKRILLSADGPYRN 408

Query: 240 VLLFLPAMCLTTENVLFIVSTLNRIFTSLQ 269
           VL F P MC   E+   +V  +++  T+L+
Sbjct: 409 VLKFKPPMCFNKEDAKLVVDEIDQCLTALE 438

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|221039894|dbj|BAH11710.1| unnamed protein product [Homo sapiens]

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 170/325 (52%), Gaps = 56/325 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE-KKPWVHVIPFPD 59
           SEANDLAL+LAR + G Q+++ +D AYHG ++ L++ISP  F    + KK +VHV P PD
Sbjct: 73  SEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPD 132

Query: 60  TYRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSLM 116
           TYRG++  D    A  YA   + I+E AH     IA  I E +    G ++PP G+   +
Sbjct: 133 TYRGKYREDHADPASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKV 192

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITS 174
            +Y+H  GGV IADE+Q G GR G HFW+FQ  G   VPDI+T+GKPMGNG P+  V+T+
Sbjct: 193 AEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTT 252

Query: 175 RKIAES----------------------LNCLD---------DNRPSGKYLVRPL----- 198
           ++IAE+                      L  LD         + +  G YL   L     
Sbjct: 253 KEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKA 312

Query: 199 ---------GINLHIFWCLILLSI-----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                    GI L I   L+   +     T        +MKE +++++ +G + NVL   
Sbjct: 313 KHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 372

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ 269
           P MC T E+  F+V  L+RI T L+
Sbjct: 373 PPMCFTEEDAKFMVDQLDRILTVLE 397

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|114595614|ref|XP_001137350.1| PREDICTED: ethanolamine-phosphate phospho-lyase isoform 1 [Pan troglodytes] gi|397519829|ref|XP_003830056.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like 1 isoform 2 [Pan paniscus]

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 170/325 (52%), Gaps = 56/325 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE-KKPWVHVIPFPD 59
           SEANDLAL+LAR + G Q+++ +D AYHG ++ L++ISP  F    + KK +VHV P PD
Sbjct: 107 SEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPD 166

Query: 60  TYRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSLM 116
           TYRG++  D    A  YA   + I+E AH     IA  I E +    G ++PP G+   +
Sbjct: 167 TYRGKYREDHADPASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKV 226

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITS 174
            +Y+H  GGV IADE+Q G GR G HFW+FQ  G   VPDI+T+GKPMGNG P+  V+T+
Sbjct: 227 AEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTT 286

Query: 175 RKIAES----------------------LNCLD---------DNRPSGKYLVRPL----- 198
           ++IAE+                      L  LD         + +  G YL   L     
Sbjct: 287 KEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKA 346

Query: 199 ---------GINLHIFWCLILLSI-----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                    GI L I   L+   +     T        +MKE +++++ +G + NVL   
Sbjct: 347 KHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 406

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ 269
           P MC T E+  F+V  L+RI T L+
Sbjct: 407 PPMCFTEEDAKFMVDQLDRILTVLE 431

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|114595612|ref|XP_001137764.1| PREDICTED: ethanolamine-phosphate phospho-lyase isoform 4 [Pan troglodytes] gi|397519827|ref|XP_003830055.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like 1 isoform 1 [Pan paniscus]

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 170/325 (52%), Gaps = 56/325 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE-KKPWVHVIPFPD 59
           SEANDLAL+LAR + G Q+++ +D AYHG ++ L++ISP  F    + KK +VHV P PD
Sbjct: 113 SEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPD 172

Query: 60  TYRGEFSADDPQAAQKYAQAARNIME-AHRD--NIATLICEPVFVVHGAVVPPPGWLSLM 116
           TYRG++  D    A  YA   + I+E AH     IA  I E +    G ++PP G+   +
Sbjct: 173 TYRGKYREDHADPASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKV 232

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITS 174
            +Y+H  GGV IADE+Q G GR G HFW+FQ  G   VPDI+T+GKPMGNG P+  V+T+
Sbjct: 233 AEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTT 292

Query: 175 RKIAES----------------------LNCLD---------DNRPSGKYLVRPL----- 198
           ++IAE+                      L  LD         + +  G YL   L     
Sbjct: 293 KEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKA 352

Query: 199 ---------GINLHIFWCLILLSI-----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                    GI L I   L+   +     T        +MKE +++++ +G + NVL   
Sbjct: 353 KHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIK 412

Query: 245 PAMCLTTENVLFIVSTLNRIFTSLQ 269
           P MC T E+  F+V  L+RI T L+
Sbjct: 413 PPMCFTEEDAKFMVDQLDRILTVLE 437

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
UNIPROTKB|F1NIA8	453	AGXT2L2 "Uncharacterized prote	0.633	0.397	0.486	2.6e-53
ZFIN|ZDB-GENE-051127-33	447	zgc:123007 "zgc:123007" [Danio	0.626	0.398	0.497	6.9e-53
ZFIN|ZDB-GENE-040426-1133	492	agxt2l1 "alanine-glyoxylate am	0.633	0.365	0.497	3.3e-51
MGI|MGI:1920197	467	Agxt2l2 "alanine-glyoxylate am	0.633	0.385	0.464	1.8e-50
UNIPROTKB|Q8IUZ5	450	AGXT2L2 "5-phosphohydroxy-L-ly	0.633	0.4	0.475	2.9e-50
UNIPROTKB|F1S421	450	AGXT2L2 "Uncharacterized prote	0.633	0.4	0.481	2.9e-50
UNIPROTKB|F6XCT4	467	AGXT2L2 "Uncharacterized prote	0.633	0.385	0.475	2e-49
UNIPROTKB|J9NU13	450	AGXT2L2 "Uncharacterized prote	0.633	0.4	0.475	2e-49
RGD|2293818	481	Agxt2l2 "alanine-glyoxylate am	0.633	0.374	0.459	2e-49
UNIPROTKB|E1B8R9	450	AGXT2L2 "Uncharacterized prote	0.633	0.4	0.470	3.3e-49

UNIPROTKB|F1NIA8 AGXT2L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 466 (169.1 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 90/185 (48%), Positives = 123/185 (66%)

Query:     1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
             SEANDLAL++AR +T  ++++V+D AYHG +  L+DISP  F     +K WVHV P PDT
Sbjct:   116 SEANDLALRMARQFTKHEDVIVLDHAYHGHLTSLIDISPYKFRNLEGQKEWVHVAPVPDT 175

Query:    61 YRGEFSADDPQAAQKYAQAARNIME-AHRDN--IATLICEPVFVVHGAVVPPPGWLSLMY 117
             YRG +  D    A  YA   +NI+E AH+    IA    E +  V G ++PP G+   + 
Sbjct:   176 YRGLYREDHEDPATAYATEVKNIIERAHKKGREIAAFFAESLPSVGGQIIPPEGYFQKVA 235

Query:   118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
             +++H+ GGV +ADEIQ G GR G HFWAFQ QG   +PDI+T+GKP+GNG PI  V T++
Sbjct:   236 EHVHKAGGVFVADEIQVGFGRVGKHFWAFQLQGEEFIPDIVTMGKPIGNGHPIACVATTK 295

Query:   176 KIAES 180
             +IAE+
Sbjct:   296 EIAEA 300

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

ZFIN|ZDB-GENE-051127-33 zgc:123007 "zgc:123007" [Danio rerio (taxid:7955)]

 Score = 471 (170.9 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 91/183 (49%), Positives = 122/183 (66%)

Query:     1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
             SEANDLAL+LAR YT  Q+++V+D AYHG +  L+DISP  F     +K WVHV P PDT
Sbjct:   114 SEANDLALRLARQYTRHQDVIVLDHAYHGHLTSLIDISPYKFRKLEGQKEWVHVAPLPDT 173

Query:    61 YRGEFSADDPQAAQKYAQAARNIME-AHRDN--IATLICEPVFVVHGAVVPPPGWLSLMY 117
             Y G +  D P+  Q YA   ++++E AH+    I++   E +  V G ++ P G+   + 
Sbjct:   174 YHGIYREDHPEPGQAYADTVKSLIEEAHKKGRKISSFFAESLPSVGGQIIFPTGYCKRVA 233

Query:   118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
             +Y+HE GGV +ADEIQ G GR GSHFWAFQ +G    PDI+T+GKPMGNG PI  V+T+ 
Sbjct:   234 EYVHEAGGVYVADEIQTGFGRVGSHFWAFQLEGEDFCPDIVTMGKPMGNGHPIACVVTTE 293

Query:   176 KIA 178
             +IA
Sbjct:   294 EIA 296

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040426-1133 agxt2l1 "alanine-glyoxylate aminotransferase 2-like 1" [Danio rerio (taxid:7955)]

 Score = 452 (164.2 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 93/187 (49%), Positives = 122/187 (65%)

Query:     1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF--MLSSEKKPWVHVIPFP 58
             SEANDLAL+LA  YTG ++I+ +D AYHG V+ L+DISP  F  M  +E    VHV   P
Sbjct:   114 SEANDLALRLAWQYTGHKDIITLDNAYHGHVSSLIDISPYKFHQMAGAEPSQHVHVALSP 173

Query:    59 DTYRGEFSADDPQAAQKYAQAARNIME-AHRDN--IATLICEPVFVVHGAVVPPPGWLSL 115
             DTYRG++  D P  A  YA+  + ++E AH+    IA  I E +    G V+PP G+   
Sbjct:   174 DTYRGKYREDHPDPATAYAENVKEVIEEAHKKGHEIAAFIAESLQSCGGQVIPPMGYFQK 233

Query:   116 MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVIT 173
             +  ++   GG+ IADE+Q G GR G+HFW FQ QG   VPDI+T+GKP+GNG P+  VIT
Sbjct:   234 VAQHVRNAGGIFIADEVQVGFGRVGTHFWGFQLQGEDFVPDIVTMGKPIGNGHPMSCVIT 293

Query:   174 SRKIAES 180
             SR+IAES
Sbjct:   294 SREIAES 300

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0050459 "ethanolamine-phosphate phospho-lyase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1920197 Agxt2l2 "alanine-glyoxylate aminotransferase 2-like 2" [Mus musculus (taxid:10090)]

 Score = 459 (166.6 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 86/185 (46%), Positives = 122/185 (65%)

Query:     1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
             SEANDLAL+LAR YTG Q++VV+D AYHG ++ L+DISP  F     +K WVHV P PDT
Sbjct:   114 SEANDLALRLARQYTGHQDVVVLDHAYHGHLSSLIDISPYKFRNLGGQKEWVHVAPLPDT 173

Query:    61 YRGEFSADDPQAAQKYAQAARNIMEAHRDN---IATLICEPVFVVHGAVVPPPGWLSLMY 117
             YRG +  D P  A+ YA   ++++ + +     IA    E +  V G ++PP G+ S + 
Sbjct:   174 YRGPYREDHPNPAEAYANEVKHVISSAQQKGRKIAAFFAESLPSVSGQIIPPAGYFSQVA 233

Query:   118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
             ++IH  GG+ +ADEIQ G GR G HFWAFQ +G   VPDI+T+GK +GNG P+  + T++
Sbjct:   234 EHIHRAGGLFVADEIQVGFGRIGKHFWAFQLEGEDFVPDIVTMGKSIGNGHPVACMATTQ 293

Query:   176 KIAES 180
              ++ +
Sbjct:   294 AVSRA 298

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0008483 "transaminase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q8IUZ5 AGXT2L2 "5-phosphohydroxy-L-lysine phospho-lyase" [Homo sapiens (taxid:9606)]

 Score = 456 (165.6 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
 Identities = 88/185 (47%), Positives = 120/185 (64%)

Query:     1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
             SEANDLAL+LAR YTG Q++VV+D AYHG ++ L+DISP  F     +K WVHV P PDT
Sbjct:   114 SEANDLALRLARHYTGHQDVVVLDHAYHGHLSSLIDISPYKFRNLDGQKEWVHVAPLPDT 173

Query:    61 YRGEFSADDPQAAQKYAQAARNIMEAHRDN---IATLICEPVFVVHGAVVPPPGWLSLMY 117
             YRG +  D P  A  YA   + ++ + ++    IA    E +  V G ++PP G+ S + 
Sbjct:   174 YRGPYREDHPNPAMAYANEVKRVVSSAQEKGRKIAAFFAESLPSVGGQIIPPAGYFSQVA 233

Query:   118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
             ++I + GGV +ADEIQ G GR G HFWAFQ QG   VPDI+T+GK +GNG P+  V  ++
Sbjct:   234 EHIRKAGGVFVADEIQVGFGRVGKHFWAFQLQGKDFVPDIVTMGKSIGNGHPVACVAATQ 293

Query:   176 KIAES 180
              +A +
Sbjct:   294 PVARA 298

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1S421 AGXT2L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 452 (164.2 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
 Identities = 89/185 (48%), Positives = 120/185 (64%)

Query:     1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
             SEANDLAL+LAR YTG  ++VV+D AYHG ++ L+DISP  F     +K WVHV P PDT
Sbjct:   114 SEANDLALRLARQYTGHWDVVVLDHAYHGHLSSLIDISPYKFRDLDGQKEWVHVAPLPDT 173

Query:    61 YRGEFSADDPQAAQKYAQAARNIMEAHRDN---IATLICEPVFVVHGAVVPPPGWLSLMY 117
             YRG +  D P  A  YA   + ++ + ++    IA    E +  V G +VPP G+   + 
Sbjct:   174 YRGLYREDHPNPAVAYASEVKRVVSSAQEKGRKIAAFFAESLPSVGGQIVPPAGFFPEVA 233

Query:   118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
             ++IH+ GGV +ADEIQ G GR G HFWAFQ QG   VPDI+T+GK +GNG P+  V T++
Sbjct:   234 EHIHKAGGVFVADEIQVGFGRVGKHFWAFQLQGEDFVPDIVTMGKSIGNGHPVACVATTQ 293

Query:   176 KIAES 180
              +A +
Sbjct:   294 AVARA 298

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

UNIPROTKB|F6XCT4 AGXT2L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 448 (162.8 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 88/185 (47%), Positives = 119/185 (64%)

Query:     1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
             SEANDLAL+LAR YTG  ++VV+D AYHG ++ L+DISP  F     +K WVHV P PDT
Sbjct:   114 SEANDLALRLARQYTGHWDVVVLDHAYHGHLSSLIDISPYKFRDLDGQKEWVHVAPLPDT 173

Query:    61 YRGEFSADDPQAAQKYAQAARNIMEAHRDN---IATLICEPVFVVHGAVVPPPGWLSLMY 117
             YRG +  D P  A  YA   + ++ + ++    IA    E +  V G ++PP G+   + 
Sbjct:   174 YRGLYQEDHPDPAGAYANEVKRVVSSVQEKGRKIAAFFVESLPSVAGQIIPPAGFFQEVA 233

Query:   118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
             ++IH  GGV +ADEIQ G GR G HFWAFQ QG   VPDI+T+GK +GNG P+  V T++
Sbjct:   234 EHIHGAGGVFVADEIQVGFGRVGKHFWAFQLQGEDFVPDIVTMGKSIGNGHPVACVATTQ 293

Query:   176 KIAES 180
              +A +
Sbjct:   294 AVARA 298

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

UNIPROTKB|J9NU13 AGXT2L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 448 (162.8 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 88/185 (47%), Positives = 119/185 (64%)

Query:     1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
             SEANDLAL+LAR YTG  ++VV+D AYHG ++ L+DISP  F     +K WVHV P PDT
Sbjct:   114 SEANDLALRLARQYTGHWDVVVLDHAYHGHLSSLIDISPYKFRDLDGQKEWVHVAPLPDT 173

Query:    61 YRGEFSADDPQAAQKYAQAARNIMEAHRDN---IATLICEPVFVVHGAVVPPPGWLSLMY 117
             YRG +  D P  A  YA   + ++ + ++    IA    E +  V G ++PP G+   + 
Sbjct:   174 YRGLYQEDHPDPAGAYANEVKRVVSSVQEKGRKIAAFFVESLPSVAGQIIPPAGFFQEVA 233

Query:   118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
             ++IH  GGV +ADEIQ G GR G HFWAFQ QG   VPDI+T+GK +GNG P+  V T++
Sbjct:   234 EHIHGAGGVFVADEIQVGFGRVGKHFWAFQLQGEDFVPDIVTMGKSIGNGHPVACVATTQ 293

Query:   176 KIAES 180
              +A +
Sbjct:   294 AVARA 298

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

RGD|2293818 Agxt2l2 "alanine-glyoxylate aminotransferase 2-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 446 (162.1 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 85/185 (45%), Positives = 120/185 (64%)

Query:     1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
             SEANDLAL+LAR YTG Q++VV+D AYHG ++ L+DISP  F     +K WVHV P PDT
Sbjct:   114 SEANDLALRLARQYTGHQDVVVLDHAYHGHLSSLIDISPYKFRNLDGQKEWVHVAPLPDT 173

Query:    61 YRGEFSADDPQAAQKYAQAARNIMEAHRDN---IATLICEPVFVVHGAVVPPPGWLSLMY 117
             YRG +  D P  A  YA   ++++ + +     IA    E +  V G ++PP G+ S + 
Sbjct:   174 YRGPYREDHPDPAGAYASEVKHVISSAQKKGRKIAAFFAESLPSVSGQIIPPAGYFSQVA 233

Query:   118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
             ++I   GG+ +ADEIQ G GR G HFWAFQ +G   VPDI+T+GK +GNG P+  + T++
Sbjct:   234 EHIRRAGGLFVADEIQVGFGRVGKHFWAFQLEGEDFVPDIVTMGKSIGNGHPVACLATTQ 293

Query:   176 KIAES 180
              ++ +
Sbjct:   294 AVSRA 298

GO:0005739 "mitochondrion" evidence=ISO

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|E1B8R9 AGXT2L2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 442 (160.7 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 87/185 (47%), Positives = 117/185 (63%)

Query:     1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
             SEANDLAL+LAR YTG  ++VV+D AYHG ++ L+DISP  F     +K WVHV P PDT
Sbjct:   114 SEANDLALRLARQYTGHWDVVVLDHAYHGHLSSLIDISPYKFRDLDGQKEWVHVAPLPDT 173

Query:    61 YRGEFSADDPQAAQKYAQAARNIMEAHRDN---IATLICEPVFVVHGAVVPPPGWLSLMY 117
             YRG +  D P  A  YA   + ++ + ++    IA    E +  V G ++PP G+   + 
Sbjct:   174 YRGPYREDHPNPAVAYASEVKRVVSSAQEKGRKIAAFFAESLPSVGGQIIPPAGYFPEVA 233

Query:   118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGMPIGAVITSR 175
              +I   GGV +ADEIQ G GR G HFWAFQ QG   VPDI+T+GK +GNG P+  V T++
Sbjct:   234 GHIRRAGGVFVADEIQVGFGRVGKHFWAFQLQGEDFVPDIVTMGKSIGNGHPVACVATTQ 293

Query:   176 KIAES 180
              +A +
Sbjct:   294 AVARA 298

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	284
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	6e-63
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	1e-56
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	3e-55
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	2e-53
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	2e-35
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	3e-35
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	2e-33
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	4e-32
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	7e-31
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	1e-28
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	1e-27
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	2e-25
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	4e-25
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	2e-23
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	6e-23
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	4e-22
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	4e-22
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	4e-22
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	1e-21
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	3e-21
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	6e-21
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	2e-20
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	2e-20
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	2e-20
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	3e-20
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	5e-20
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	2e-19
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	2e-19
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	9e-19
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	2e-18
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	2e-18
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	4e-18
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	9e-18
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	1e-17
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	2e-17
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	3e-17
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	4e-17
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	5e-17
PRK07046	453	PRK07046, PRK07046, aminotransferase; Validated	6e-17
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	8e-17
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	9e-17
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	3e-16
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	3e-16
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	3e-16
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	6e-16
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	8e-16
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	1e-15
PLN02482	474	PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a	1e-15
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	2e-15
PRK04013	364	PRK04013, argD, acetylornithine/acetyl-lysine amin	2e-15
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	3e-15
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	5e-15
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	7e-15
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	9e-15
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	9e-15
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	2e-14
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	4e-14
PRK00062	426	PRK00062, PRK00062, glutamate-1-semialdehyde amino	3e-13
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	4e-13
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	7e-13
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	1e-12
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	5e-12
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	8e-12
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	2e-11
PRK12389	428	PRK12389, PRK12389, glutamate-1-semialdehyde amino	2e-11
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	6e-11
PRK07986	428	PRK07986, PRK07986, adenosylmethionine--8-amino-7-	8e-11
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	8e-11
PRK00615	433	PRK00615, PRK00615, glutamate-1-semialdehyde amino	1e-10
PRK06209	431	PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a	2e-10
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	3e-10
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	1e-09
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	2e-09
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	3e-09
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	3e-09
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	8e-09
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	1e-08
PRK06943	453	PRK06943, PRK06943, adenosylmethionine--8-amino-7-	7e-08
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	7e-07
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	8e-04
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	0.004

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  213 bits (544), Expect = 6e-63
 Identities = 110/321 (34%), Positives = 162/321 (50%), Gaps = 58/321 (18%)

Query: 1    SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEK--KPWVHVIPFP 58
            SEAN LAL+LARA+TG+++ +V+D AYHGT   L+D+SP  F     K     V V   P
Sbjct: 690  SEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVP 749

Query: 59   DTYRGEFSADDPQAAQKYAQA-ARNI--MEAHRDNIATLICEPVFVVHGAVVPPPGWLSL 115
            D+YRG     D +  +++A++ A  I  M A     A  I E +  V G +  P G+L  
Sbjct: 750  DSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLRE 809

Query: 116  MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSR 175
            +Y  +   GGV IADE+Q G GR GSH+WAF+TQG VPDI+T+GKP+GNG P+GAV+T+R
Sbjct: 810  VYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTR 869

Query: 176  KIAES------------------------LNCLDDNRPS------GKYL----------- 194
            +IA+S                        L+ ++D          G YL           
Sbjct: 870  EIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRF 929

Query: 195  -----VRPLGINLHIFWCLIL----LSITYYLYRYTR-RMKEAKIIVANEGEYGNVLLFL 244
                 VR +G+ L I   L+      +    + RY +   +E  I++  EG + NVL   
Sbjct: 930  DIIGDVRGMGLFLGIE--LVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIR 987

Query: 245  PAMCLTTENVLFIVSTLNRIF 265
            P +  +  +   ++  L+ + 
Sbjct: 988  PPLIFSRADADHLLEVLDDVL 1008

Length = 1013

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score =  195 bits (497), Expect = 1e-56
 Identities = 86/190 (45%), Positives = 115/190 (60%), Gaps = 14/190 (7%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHG------TVNLLLDISPRAFMLSSEKKPWVHV 54
           SEANDLA++LA A +GR+++V V  AYHG       V+  +  +P+A      +  WVH 
Sbjct: 651 SEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQAL---ETRPDWVHP 707

Query: 55  IPFPDTYRGEFSADDPQAAQKYAQAARNIME---AHRDNIATLICEPVFVVHGAVVPPPG 111
           +  P+TYRG F   D  +A  Y +     +E   A    +A  ICEPV+   G +  PPG
Sbjct: 708 VESPNTYRGRFRGAD--SAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPG 765

Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
           +L  +Y  +   GGV IADE+Q G GR G +FW F+ QG VPDIIT+ K MGNG P+GAV
Sbjct: 766 YLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHPLGAV 825

Query: 172 ITSRKIAESL 181
           IT R+IAE+L
Sbjct: 826 ITRREIAEAL 835

Length = 972

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  184 bits (469), Expect = 3e-55
 Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 7/183 (3%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKP---WVHVIPF 57
           +EA + A+++ARAYTGR  ++  D A+HG     L ++       +   P    V+ +P+
Sbjct: 127 AEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPY 186

Query: 58  PDTYRGEFSADDPQAAQKYAQAARNIMEAHR---DNIATLICEPVFVVHGAVVPPPGWLS 114
           P+ YR  F     +      +     +       + +A +I EP+    G +VPP G+L 
Sbjct: 187 PNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLK 246

Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITS 174
            +     E G ++IADE+Q G GR+G   +AF+  G  PDI+T+ K +G G+P+ AV+  
Sbjct: 247 ALRKLCREHGILLIADEVQTGFGRTG-KMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGR 305

Query: 175 RKI 177
            +I
Sbjct: 306 AEI 308

Length = 447

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score =  178 bits (454), Expect = 2e-53
 Identities = 82/315 (26%), Positives = 133/315 (42%), Gaps = 57/315 (18%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA + AL+LARAYTGR+ I+  + AYHG     L ++               V+  P  
Sbjct: 106 TEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYP 165

Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
           YR    A+         +A    +E H + +A +I EP+    G +VPPPG+L  + +  
Sbjct: 166 YRYRPPAE----LADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELC 221

Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIA-- 178
            + G ++IADE+Q G GR+G   +AF+  G  PDI+T+GK +G G+P+GAV+   +I   
Sbjct: 222 RKHGILLIADEVQTGFGRTG-KMFAFEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMDA 280

Query: 179 -----------------------------ESLNCLDDNRPSGKYL--------------- 194
                                        E    L++    G+YL               
Sbjct: 281 FPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVG 340

Query: 195 -VRPLGINLHIFWCLILLSITYYL---YRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLT 250
            VR  G+ + I       +         +  +   E  +++   G  GNV+  LP + +T
Sbjct: 341 DVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG--GNVIRLLPPLIIT 398

Query: 251 TENVLFIVSTLNRIF 265
            E +   +  L+   
Sbjct: 399 EEEIDEGLDALDEAL 413

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score =  131 bits (332), Expect = 2e-35
 Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 10/188 (5%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK-----PWVHVI 55
           S+AND  ++ ARAYTGR  I+    AYHG+    L +S     L+  +K     P    I
Sbjct: 113 SDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMS--GISLNMRRKYGPLLPGFVHI 170

Query: 56  PFPDTYRGEFSADDPQAAQKYAQAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWL 113
           PFPD YRG +   D    ++Y    + + E +   D +A ++ E +    G + P PG+ 
Sbjct: 171 PFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYF 230

Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
             +Y +  E G +   D+IQ G+GR+G  + +       PD+++ GK +  GMP+ A++ 
Sbjct: 231 EALYKFCREHGILFAVDDIQQGLGRTGK-WSSISHFNITPDLMSFGKSLAGGMPMSAIVG 289

Query: 174 SRKIAESL 181
            ++I ESL
Sbjct: 290 RKEIMESL 297

Length = 445

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score =  128 bits (325), Expect = 3e-35
 Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 21/193 (10%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISP-----RAFMLSSEKK 49
           SEAN+ A++LAR Y      TG+  I+     +HG     L ++      + F  S    
Sbjct: 86  SEANETAIKLARQYAKKKGATGKTKIIAFSGGFHGRTLGALSVTGSSGYKKGFGPSL--- 142

Query: 50  PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPP 109
           P V+ +P+PD    E        A       R I   H DNIA +I EP+    G V PP
Sbjct: 143 PGVYFLPYPDLEAAEEELACADEAL------RLIKAVHDDNIAAVIVEPIQGEGGVVPPP 196

Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIG 169
           PG+L+ + +   + G ++IADE+Q G GR+G   +A +  G  PDI+T+ K +  G+P+ 
Sbjct: 197 PGFLAGLREICKKHGVLLIADEVQTGFGRTGK-LFACEHYGVTPDIMTLAKALTGGLPLS 255

Query: 170 AVITSRKIAESLN 182
           AV+ + +I ++ +
Sbjct: 256 AVLATAEIMQAFH 268

Length = 338

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score =  126 bits (318), Expect = 2e-33
 Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 13/193 (6%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PW 51
           SEA + AL++A  Y        R+  +     YHG T+  +    P A   +      P 
Sbjct: 115 SEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPE 174

Query: 52  VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR-DNIATLICEPVFV-VHGAVVPP 109
           V  +P P  YR  F  +  +   + A     ++  H  + IA  I EPV     G +VPP
Sbjct: 175 VLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPP 234

Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPI 168
           PG+L  + +   + G ++IADE+  G GR+G  F A +  G VPDI+ + K +  G +P+
Sbjct: 235 PGYLKRVREICDKYGILLIADEVATGFGRTGKMF-ACEHAGIVPDILCLAKGLTGGYLPL 293

Query: 169 GAVITSRKIAESL 181
            AV+TS +I E+ 
Sbjct: 294 SAVLTSDRIYEAF 306

Length = 449

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score =  122 bits (308), Expect = 4e-32
 Identities = 62/185 (33%), Positives = 101/185 (54%), Gaps = 5/185 (2%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSE--KKPWVHVIPFP 58
           S+AND A++ ARAYT R+ I+    +Y+G+    + ++   F + +   +   VH IP+P
Sbjct: 111 SDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYP 170

Query: 59  DTYRGEFSADDPQAAQKYAQAARNIMEA--HRDNIATLICEPVFVVHGAVVPPPGWLSLM 116
           D YR  F  +      +  +  +   E   + + +A L  EP+    G +VPP  +   +
Sbjct: 171 DCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKL 230

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRK 176
              + E G +++ DE+Q G+GR+G  F A +  G  PDIIT+GKP+G G+PI A I   +
Sbjct: 231 KKILDEHGILLVVDEVQSGLGRTGKWF-AIEHFGVEPDIITLGKPLGGGLPISATIGRAE 289

Query: 177 IAESL 181
           I +SL
Sbjct: 290 IMDSL 294

Length = 443

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score =  118 bits (299), Expect = 7e-31
 Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 42/195 (21%)

Query: 1   SEANDLALQLARAYTG---RQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK------- 49
           +EAN+ AL+LAR YTG   +  I+  + ++HG T   L  +S      + + K       
Sbjct: 110 AEANEAALKLARKYTGDPEKSKIIAFENSFHGRT---LGALS-----ATGQPKYRKGFGP 161

Query: 50  --PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVV 107
             P    +PF          +D +A +           A  ++ A +I EP+    G + 
Sbjct: 162 LLPGFRHVPF----------NDIEALEA----------AIDEDTAAVIVEPIQGEGGVIP 201

Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMP 167
            PP +L  + +   E G ++I DE+Q G+GR+G   +A++  G  PDI+T+ K +G G P
Sbjct: 202 APPEFLKALRELCDEHGALLILDEVQTGLGRTG-KLFAYEHYGVEPDILTLAKALGGGFP 260

Query: 168 IGAVITSRKIAESLN 182
           IGA++ + +IA +  
Sbjct: 261 IGAMLATEEIASAFT 275

Length = 404

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score =  112 bits (283), Expect = 1e-28
 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 16/193 (8%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEK--------KPWV 52
           +EA + AL+LA+  T R  I+     +HG     L ++      S  K           V
Sbjct: 113 AEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTT-----SKSKYRKYYQPLLGSV 167

Query: 53  HVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD--NIATLICEPVFVVHGAVVPPP 110
           +  P+P   R     D      +  +   ++ +       +A +I EPV    G +VPP 
Sbjct: 168 YQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPK 227

Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
            +L  + +     G ++I DE+Q G GR+G  F A QT G VPDI+T+ K + +G+P+ A
Sbjct: 228 SFLKKLREICDRHGILLIFDEVQTGFGRTGEWF-AAQTFGVVPDIMTIAKGIASGLPLSA 286

Query: 171 VITSRKIAESLNC 183
           V+ S+++ E    
Sbjct: 287 VVASKELMEQWPL 299

Length = 433

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score =  110 bits (276), Expect = 1e-27
 Identities = 68/185 (36%), Positives = 100/185 (54%), Gaps = 19/185 (10%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVI-PF-P 58
           +EA + A+++AR+YTGRQ +VV D AYHG  NL +        L+++  P+     PF P
Sbjct: 127 AEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTM-------ALTAKSMPYKSGFGPFAP 179

Query: 59  DTYRGEFS---ADDPQAAQKYAQAARNIMEAHR-----DNIATLICEPVFVVHGAVVPPP 110
           + YR   S    D    A    +AA   +         DN+A +I EP+    G +VP  
Sbjct: 180 EVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAE 239

Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
           G+L  + ++  E G V IADE+Q G  R+G+ F A + +G VPD+IT  K +  G+P+ A
Sbjct: 240 GFLPALLEWCRENGVVFIADEVQTGFARTGAWF-ACEHEGIVPDLITTAKGIAGGLPLSA 298

Query: 171 VITSR 175
           V T R
Sbjct: 299 V-TGR 302

Length = 443

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score =  103 bits (259), Expect = 2e-25
 Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 36/192 (18%)

Query: 1   SEANDLALQLARAYTG-----RQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW---- 51
           +EAN+ AL+LAR YTG     ++ I+  + ++HG     L  + +       +K +    
Sbjct: 94  AEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQ----PKYQKGFEPLV 149

Query: 52  --VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPP 109
                 P+          +D ++ +K             D  A +I EP+    G     
Sbjct: 150 PGFSYAPY----------NDIESLKKAID----------DETAAVIVEPIQGEGGVNPAS 189

Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIG 169
             +L  + +   +   ++I DE+Q G+GR+G  F+A++  G  PDIIT+ K +G G+PIG
Sbjct: 190 AEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHYGIEPDIITLAKGLGGGVPIG 248

Query: 170 AVITSRKIAESL 181
           A +   ++AE+ 
Sbjct: 249 ATLAKEEVAEAF 260

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score =  103 bits (257), Expect = 4e-25
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 10/205 (4%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW---VHVIPF 57
           +EA + A+++AR+YTGR  +V  D  +HG  N+ + ++ +     S   P+   V+  P 
Sbjct: 104 AEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPL 163

Query: 58  PDTYRGEFSADDPQAAQKYAQAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLSL 115
           P  YR     D   +      AAR I       +N+A L+ EPV    G +VP  G++  
Sbjct: 164 PYPYRD-GLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPA 222

Query: 116 MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSR 175
           + D+  E G V IADE+Q G  R+G+ F A + +G  PD+IT  K + +G+P+  V    
Sbjct: 223 LLDWCREHGIVFIADEVQTGFARTGAMF-ACEHEGPEPDLITTAKSLADGLPLSGVTGR- 280

Query: 176 KIAESLNCLDDNRPSGKYLVRPLGI 200
             AE ++        G Y   PL  
Sbjct: 281 --AEIMDAPAPGGLGGTYAGNPLAC 303

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score = 97.9 bits (245), Expect = 2e-23
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 30/188 (15%)

Query: 2   EANDLALQLARAYTGRQN-----IVVVDAAYHGTVNLLLDISPRAF-MLSSEKKPWVH-- 53
           EAN+ A++LAR Y  ++      I+  + ++HG          R    LS+  +P     
Sbjct: 107 EANEAAIKLARKYGHKKGIEKPEIITAENSFHG----------RTLATLSATGQPKYQEG 156

Query: 54  VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
             P  + +      +D +A          +  A  D  A ++ EP+    G       +L
Sbjct: 157 FEPLVEGFI-YVPFNDIEA----------LKAAITDKTAAVMLEPIQGEGGVNPADKEYL 205

Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
             + +   E G ++I DE+Q GMGR+G   +A+Q  G  PDI+T+ K +G G+PIGAV+ 
Sbjct: 206 QALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYGIEPDIMTLAKGLGGGVPIGAVLA 264

Query: 174 SRKIAESL 181
             K+A+  
Sbjct: 265 KEKVADVF 272

Length = 396

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score = 97.0 bits (242), Expect = 6e-23
 Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 19/191 (9%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHG--TVNLLLDISP---RAFMLSSEKK 49
           S+A D A++  R Y        ++  + ++  YHG  +V   L   P   R F L     
Sbjct: 117 SDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLP---L 173

Query: 50  PWVHVIPFPDTYRGEFSADDPQA--AQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVV 107
           PW H IP P  YR     DDPQA  A   A     + E   DN+A   CEP+    G +V
Sbjct: 174 PWQHKIPSPYPYRNPV-GDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIV 232

Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-M 166
           PP GWL  M +   E+G + +ADE+  G GR+G  F A + +G VPD++TV K + +G +
Sbjct: 233 PPKGWLKAMREACRELGILFVADEVITGFGRTGPLF-ACEAEGVVPDLMTVAKGLTSGYV 291

Query: 167 PIGAVITSRKI 177
           P+GAV+ S  +
Sbjct: 292 PMGAVLMSDHV 302

Length = 459

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score = 94.9 bits (236), Expect = 4e-22
 Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 29/214 (13%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW--------- 51
           +EA + A+++AR YT RQ I+     +HG   + +        ++S+ KP+         
Sbjct: 125 AEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMT-------MTSKVKPYKFGFGPFAP 177

Query: 52  -VHVIPFPDTYRGEFSADDPQAAQKYAQAARN--IMEAHRDNIATLICEPVFVVHGAVVP 108
            V+  PFP  YR      + Q      +  +N  I E   + IA ++ EPV    G +VP
Sbjct: 178 EVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVP 237

Query: 109 PPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPI 168
              ++  + +   E G + +ADEIQ G  R+G +F A +    VPD+ITV K +G G+PI
Sbjct: 238 SKKFVQEVRNICSEHGILFVADEIQTGFARTGKYF-AIEHFDVVPDLITVSKSLGAGVPI 296

Query: 169 GAVITSRKIAESLNCLDDNRP---SGKYLVRPLG 199
             VI  ++I      +D++ P    G Y   PLG
Sbjct: 297 SGVIGRKEI------MDESAPGELGGTYAGSPLG 324

Length = 451

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score = 95.0 bits (237), Expect = 4e-22
 Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 34/191 (17%)

Query: 2   EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPR---AFMLSSEKK-------PW 51
           E+N+ A+++AR +TGR+ I+    A+HG          R   +  L++ K        P 
Sbjct: 126 ESNEAAIKIARYHTGRKYIIAFLGAFHG----------RTYGSLSLTASKPVQRKGFFPL 175

Query: 52  V----HVIPFPDTYRGEFSADDP----QAAQKYAQAA--RNIMEAHRDNIATLICEPVFV 101
           +    HV P+P+ YR  +  ++P     A   + +    + ++    + +A +I EP+  
Sbjct: 176 MPGVIHV-PYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPP--EEVAAIIVEPIQG 232

Query: 102 VHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKP 161
             G VVPP  +   +     + G ++I DE+Q GMGR+G   +A +  G  PDIIT+ K 
Sbjct: 233 EGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEHFGVEPDIITLAKA 291

Query: 162 MGNGMPIGAVI 172
           +  G+P+GAVI
Sbjct: 292 IAGGLPLGAVI 302

Length = 441

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score = 95.0 bits (237), Expect = 4e-22
 Identities = 59/193 (30%), Positives = 85/193 (44%), Gaps = 34/193 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA   A++LARAYTGR  I+  +  YHG  + LL                V       T
Sbjct: 119 TEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLL----------------VKAGSGAAT 162

Query: 61  YRGEFSADDPQAAQKYA--------QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                S   P    K+         +A     E + D+IA +I EPV    G V P PG+
Sbjct: 163 LGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGF 222

Query: 113 LSLMYDYIHEIGGVVIADEIQCG----MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPI 168
           L  + +   E G ++I DE+  G    +G +  ++      G  PD+ T+GK +G G+PI
Sbjct: 223 LEGLRELTEEHGALLIFDEVITGFRVALGGAQGYY------GVEPDLTTLGKIIGGGLPI 276

Query: 169 GAVITSRKIAESL 181
           GA     +I E L
Sbjct: 277 GAFGGRAEIMEQL 289

Length = 432

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score = 93.6 bits (233), Expect = 1e-21
 Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 23/191 (12%)

Query: 2   EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW---------V 52
           +AN+ A+++AR +TGR  ++    +YHG           A  L+ + + W         V
Sbjct: 123 DANEHAVRMARLHTGRPKVLSAYRSYHGGTGS-------AINLTGDPRRWPNDTGRAGVV 175

Query: 53  HVI-PFPDTYRGEFSADDPQ--AAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPP 109
           H   PF   YR EF A   +    +  A   R I       IA ++ E V    G +VPP
Sbjct: 176 HFFGPFL--YRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPP 233

Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGM-PI 168
           PG+L+ + +     G V+IADE+  G GR+G  F A +  G VPD+IT  K + +G  P+
Sbjct: 234 PGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWF-AIEHFGVVPDLITFAKGVNSGYVPL 292

Query: 169 GAVITSRKIAE 179
           G V  S  IA 
Sbjct: 293 GGVAISEAIAA 303

Length = 451

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score = 91.6 bits (228), Expect = 3e-21
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 49/194 (25%)

Query: 2   EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF----MLSSEK--------K 49
           EAN+ AL+LAR +TG+  IV  + ++HG          R F        EK         
Sbjct: 97  EANEAALKLARKHTGKSKIVTFEQSFHG----------RTFGTMSATGQEKIKEGFGPLL 146

Query: 50  PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVH--GAVV 107
           P    +PF D                  +A + +M    + +A ++ E   VV   G V+
Sbjct: 147 PGFTHVPFND-----------------IKALKEVMN---EEVAAVMLE---VVQGEGGVI 183

Query: 108 P-PPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGM 166
           P  P +L  +     + G ++I DE+Q G+GR+G+ F A++  G  PDI+TV K +GNG+
Sbjct: 184 PADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF-AYEQFGLDPDIVTVAKGLGNGI 242

Query: 167 PIGAVITSRKIAES 180
           P+GA+I  +++  +
Sbjct: 243 PVGAMIGKKELGTA 256

Length = 377

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 91.4 bits (228), Expect = 6e-21
 Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 28/198 (14%)

Query: 6   LALQ--LARAYTGRQNIVVVDAAYHG-TVNLL----LDISPRAFMLSSEKKPW---VHVI 55
           +ALQ    +   G+   +     YHG T   +    +      F      +P    V  I
Sbjct: 110 MALQYWQNQGRPGKTRFLAFRNGYHGDTFGAMSVGDVGGFHALF------EPLLFEVVFI 163

Query: 56  PFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA---VVPPPGW 112
           P P  YR     D      +   A   ++E H D IA  I EP  +V GA      PP +
Sbjct: 164 PAPPCYRCWDPDDC---EAECLAALEALLEEHADEIAAFIVEP--LVQGAGGMRFYPPEY 218

Query: 113 LSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAV 171
           L  + +   E G ++IADEI  G GR+G  F A +  G  PDI+ + K +  G +P+ A 
Sbjct: 219 LRKLRELCDEYGVLLIADEIATGFGRTGKLF-ACEHAGVTPDILCLSKGLTGGYLPLAAT 277

Query: 172 ITSRKIAESLNCLDDNRP 189
           +T+ +I E+     D+  
Sbjct: 278 LTTDEIYEA--FYSDDEG 293

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score = 89.6 bits (223), Expect = 2e-20
 Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 36/180 (20%)

Query: 2   EANDLALQLARAYTGRQNIVVVDAAYHG-TVN-LLLDISPRAFMLSSEKKPW------VH 53
           EAN+ A +LAR  TGR  IV  +  +HG T+  L L   P      +++ P+      V 
Sbjct: 114 EANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQP------AKRAPFEPLPGGVE 166

Query: 54  VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
            +P+ D                   A      A  D+ A +  EP+    G V PP G+L
Sbjct: 167 HVPYGD-----------------VDALA---AAVDDDTAAVFLEPIQGEAGVVPPPAGYL 206

Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
           +   +     G +++ DE+Q G+GR+G  ++A Q  G  PD++T+ K +G G+PIGA + 
Sbjct: 207 AAAREITDRHGALLVLDEVQTGIGRTG-AWFAHQHDGVTPDVVTLAKGLGGGLPIGACLA 265

Length = 398

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score = 89.8 bits (223), Expect = 2e-20
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 29/191 (15%)

Query: 1   SEANDLALQLARAYT---GRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW------ 51
           +E+ + AL+LA+AY    G+   +    A+HG    L  +S  A   S+ +KP+      
Sbjct: 151 TESVEAALKLAKAYQSPRGKFTFIATSGAFHGKS--LGALSATA--KSTFRKPFMPLLPG 206

Query: 52  VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
              +PF +        +  + A    +          D++A +I EP+    G ++PP G
Sbjct: 207 FRHVPFGN-------IEAMRTALSECKKTG-------DDVAAVILEPIQGEGGVILPPEG 252

Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGA 170
           +L+ +     E G ++I DE+Q GMGR+G   +A + +   PDI+ + K +G G MPIGA
Sbjct: 253 YLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHENVQPDILCLAKALGGGVMPIGA 311

Query: 171 VITSRKIAESL 181
            I + ++   L
Sbjct: 312 TIATEEVFSVL 322

Length = 459

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score = 89.6 bits (223), Expect = 2e-20
 Identities = 66/208 (31%), Positives = 96/208 (46%), Gaps = 43/208 (20%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLL--LDIS-------PRAFMLS 45
           SEA + AL+LAR Y        R++ +    +YHG  N L  L I        P A +L 
Sbjct: 100 SEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHG--NTLGALAIGGNAWRREPFAPLLI 157

Query: 46  SEKKPWVHVIP-FPDTYRGEFSADDPQAAQKYAQAARN-----IMEAHRDNIATLICEPV 99
                  HV P +   YR +           Y Q   +     I+E   D +A  + E V
Sbjct: 158 ----EAHHVSPCYA--YREQ--RAGESDEA-YGQRLADELEAKILELGPDTVAAFVAETV 208

Query: 100 F-VVHGAVVPPPGWLSLMYDYIHEI----GGVVIADEIQCGMGRSGSHFWAFQTQGAVPD 154
                GAV P PG+       I E+    G ++I DE+ CGMGR+G   +A +  G  PD
Sbjct: 209 VGATAGAVPPVPGYFK----RIREVCDRYGVLLILDEVMCGMGRTG-TLFACEEDGVAPD 263

Query: 155 IITVGKPMGNG-MPIGAVITSRKIAESL 181
           ++T+ K +G G  PIGAV+ S +I +++
Sbjct: 264 LVTIAKGLGAGYQPIGAVLASDRIYDAI 291

Length = 443

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 20/197 (10%)

Query: 1   SEANDLALQLARAY---TG---RQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHV 54
           SEA + A +LA+ Y   TG   +  ++    AYHGT    L I+     L + K P+  +
Sbjct: 122 SEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITG----LPAFKAPFEPL 177

Query: 55  IP----FPDT--YRGEFSADDPQAAQKYA--QAARNIMEAHRDNIATLICEPVFVVHGAV 106
           +P     P+T  YR     DDP+A  ++A  +    I     D +A +  EPV    G  
Sbjct: 178 VPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCF 237

Query: 107 VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG- 165
            PPPG+   + +       ++++DE+ C  GR G  F   +  G VPDIIT  K + +G 
Sbjct: 238 PPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMF-GCERFGYVPDIITCAKGITSGY 296

Query: 166 MPIGAVITSRKIAESLN 182
            P+GA+I S ++ E   
Sbjct: 297 SPLGAMIASDRLFEPFL 313

Length = 460

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score = 88.5 bits (220), Expect = 5e-20
 Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 22/195 (11%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVN-LLLDISPRAFMLSSEKKPWVHVIPFPD 59
           +EA   A++LAR YTGR  I+  +  YHG  + LL+     A  L     P V       
Sbjct: 114 TEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKL 173

Query: 60  TYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDY 119
           T    +  +D +A ++       + E + + IA +I EPV    G V P P +L+ +   
Sbjct: 174 TLVLPY--NDLEALEE-------VFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRAL 224

Query: 120 IHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
             E G ++I DE+  G  +   G    A +  G  PD+ T+GK +G G+P+GA    R+I
Sbjct: 225 TEEYGSLLIFDEVMTGFRVALGG----AQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREI 280

Query: 178 AESLNCLDDNRPSGK 192
            E L       P G 
Sbjct: 281 MERLA------PEGP 289

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score = 87.4 bits (216), Expect = 2e-19
 Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 21/183 (11%)

Query: 1   SEANDLALQLARAYT---GRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVHVIP 56
           +E+ + AL+LA+AY    G+   +    A+HG ++  L   +  AF     +KP++ ++P
Sbjct: 144 TESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAF-----RKPFMPLLP 198

Query: 57  -FPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSL 115
            F     G+  A            A N  +   D++A +I EP+    G ++PP G+L  
Sbjct: 199 GFHHVAFGDIEA---------MLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPA 249

Query: 116 MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITS 174
           +     E G ++I DE+Q GMGR+G  F A + +G  PDI+ + K +G G MPIGA I +
Sbjct: 250 VRALCDEFGALLILDEVQTGMGRTGKMF-ACEHEGVQPDILCLAKALGGGVMPIGATIAT 308

Query: 175 RKI 177
             +
Sbjct: 309 EAV 311

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 23/203 (11%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK----P 50
           SEAN+ A ++AR Y        R   +    AYHG     L  + +A     ++K    P
Sbjct: 115 SEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQA-----QRKYKYEP 169

Query: 51  ----WVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIM-EAHRDNIATLICEPVFVVHGA 105
               ++HV P PD YR      +     +  +    +M     + IA +I EP+    G 
Sbjct: 170 LAPGFLHVPP-PDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGV 228

Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
           ++PP  ++  + +   + G ++I+DE+ CG GR+G  F  F   G  PDIIT+ K + + 
Sbjct: 229 LMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAF-GFMNYGVKPDIITMAKGITSA 287

Query: 166 -MPIGAVITSRKIAESLNCLDDN 187
            +P+ A    ++I E+     + 
Sbjct: 288 YLPLSATAVKKEIYEAFKGKGEY 310

Length = 451

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 85.2 bits (211), Expect = 9e-19
 Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 27/198 (13%)

Query: 1   SEANDLALQLA------RAYTGRQNIVVVDAAYHG-TVNL-------LLDISPRAFMLSS 46
           + A ++A+++A      +    +Q  V +  AYHG T+         L      + +  +
Sbjct: 126 ATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEA 185

Query: 47  EKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA- 105
                   +P+P TYR  +  D  +  +K+ +    +++   + IA +I EP  +V GA 
Sbjct: 186 ------IKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEP--LVQGAG 237

Query: 106 --VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG 163
             +  P G+L  + +   +   + I DE+  G GR+G  F A + +   PDI+T GK + 
Sbjct: 238 GMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF-ACEHENVTPDIMTAGKGLT 296

Query: 164 NG-MPIGAVITSRKIAES 180
            G +PI   +T+ +I  +
Sbjct: 297 GGYLPIAITVTTDEIYNA 314

Length = 460

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 19/187 (10%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLL----DISPRAFMLSSEKKPWVHVIP 56
           ++A + A++LA+ YTGR N++     YHG  +  L    ++SP+  +  +   P V  +P
Sbjct: 131 ADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAV--NGLMPGVQFMP 188

Query: 57  FPDTYR------GEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPP 110
           +P  YR      GE       A   Y +     +E+     A +I E +    G V P P
Sbjct: 189 YPHEYRCPLGIGGEAGVK---ALTYYFENFIEDVESGVRKPAAVILEAI-QGEGGVNPAP 244

Query: 111 -GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIG 169
             WL  + +   + G ++I DE+Q G  R+G  F AF+  G  PDII + K +G G+P+ 
Sbjct: 245 VEWLQKIREVTQKHGILLIVDEVQAGFARTGKMF-AFEHAGIEPDIIVMSKAVGGGLPL- 302

Query: 170 AVITSRK 176
           AV+  +K
Sbjct: 303 AVLGIKK 309

Length = 459

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 6/181 (3%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW--VHVIPFP 58
           ++A + A++LA+ YTGR N++     +HG     L ++   F  ++       V  +P+P
Sbjct: 112 ADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYP 171

Query: 59  DTYRGEFSADDPQAAQKYAQAARNIME---AHRDNIATLICEPVFVVHGAVVPPPGWLSL 115
             YR  F       +    +   N +E   +  D  A +I E +    G V  P  WL  
Sbjct: 172 HEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQK 231

Query: 116 MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSR 175
           + +   +    +I DE+Q G GRSG+  +AF+  G  PD + + K +G G+P+  ++ + 
Sbjct: 232 IREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAP 290

Query: 176 K 176
           +
Sbjct: 291 E 291

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score = 83.6 bits (207), Expect = 4e-18
 Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 41/215 (19%)

Query: 1   SEANDLALQLARAYTGR------QNIVVVDAAYHGTVNLLLDISPRA-----FMLSSEKK 49
           S A D AL+    Y         ++I+    AYHG+  L   ++ +A     F  +S+  
Sbjct: 122 STAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDL- 180

Query: 50  PWVHVIPFPDTYRGEFSADDPQAAQKYAQAA----------RNIMEAHRDNIATLICEPV 99
             VH +  P+ YR              ++AA            I+    DNIA  I EP+
Sbjct: 181 --VHHLSSPNPYR---------RPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPI 229

Query: 100 FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDIITV 158
               G +VPPPG+ + M +       + I+DE+  G GR G HF+A +   G  PDIIT 
Sbjct: 230 LGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG-HFFASEAVFGIQPDIITF 288

Query: 159 GKPMGNG-MPIGAVITSRKIAESLNCLDDNRPSGK 192
            K + +G  P+GAVI S ++ + +     + P+ K
Sbjct: 289 AKGLTSGYQPLGAVIISERLLDVI-----SGPNAK 318

Length = 466

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score = 82.4 bits (204), Expect = 9e-18
 Identities = 62/209 (29%), Positives = 91/209 (43%), Gaps = 50/209 (23%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGT------VN-----------LLLDI 37
           S++ + AL+LAR Y        R   + +   YHGT      VN           LL   
Sbjct: 114 SDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLL--- 170

Query: 38  SPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQA-AQKYAQA-ARNIMEAHRDNIATLI 95
                       P    +  P  YR  F+  DP+  A+  A+   R I     D IA  I
Sbjct: 171 ------------PGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFI 218

Query: 96  CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHF----WAFQTQGA 151
            EPV    G +VPP  +  L+ +     G ++IADE+  G GR+GS F    W     G 
Sbjct: 219 AEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGW-----GV 273

Query: 152 VPDIITVGKPMGNG-MPIGAVITSRKIAE 179
            PDI+ + K + +G +P+GA + + +IA+
Sbjct: 274 KPDIMCLAKGITSGYVPLGATMVNARIAD 302

Length = 449

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score = 81.4 bits (202), Expect = 1e-17
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 49/199 (24%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAF-MLS---SEKK- 49
           +EA + A++ AR Y        R  I+  + A+HG          R    ++    EK  
Sbjct: 98  AEAVECAIKTARRYHYGKGHPERYRIITFEGAFHG----------RTLATIAAGGQEKYL 147

Query: 50  -------PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVV 102
                  P    +PF D                  +A +    A   N A ++ EP+   
Sbjct: 148 EGFGPLVPGFDQVPFGDI-----------------EALKA---AITPNTAAILIEPIQGE 187

Query: 103 HGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM 162
            G    P  +L  +     E G ++I DE+QCGMGR+G   +A +  G  PDI+ V K +
Sbjct: 188 GGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK-LFAHEWAGVTPDIMAVAKGI 246

Query: 163 GNGMPIGAVITSRKIAESL 181
           G G P+GA + + + A+ +
Sbjct: 247 GGGFPLGACLATEEAAKGM 265

Length = 389

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score = 81.3 bits (201), Expect = 2e-17
 Identities = 61/188 (32%), Positives = 83/188 (44%), Gaps = 25/188 (13%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLD-ISP------RAFMLSSEKKPWVH 53
           + A  +AL+LAR  TG   +V +  ++HG     LD IS       R  M        V 
Sbjct: 140 TSAIGMALKLARHITGNFKVVSLWDSFHGAS---LDAISVGGEACFRQGM--GPLMAGVE 194

Query: 54  VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
            IP   +YRG F   D  +   YA     ++E     I   I E V       VP   + 
Sbjct: 195 RIPPAVSYRGAFPDAD-GSDVHYADYLEYVIEKEGG-IGAFIAEAVRNTD-VQVPSKAY- 250

Query: 114 SLMYDYIHEI----GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGM-PI 168
              +  + EI      ++I DEI  GMGR+G  F   Q  G  PDI+ +GK +G G+ PI
Sbjct: 251 ---WKRVREICDKHNVLLIIDEIPNGMGRTGEWF-THQAYGIEPDILCIGKGLGGGLVPI 306

Query: 169 GAVITSRK 176
            A+IT  K
Sbjct: 307 AAMITKDK 314

Length = 459

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score = 80.5 bits (199), Expect = 3e-17
 Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 5/106 (4%)

Query: 78  QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG-WLSLMYDYIHEIGGVVIADEIQCGM 136
           +AAR +++  +   A +  EPV    G + P    +L  +     E G +++ DE+QCG+
Sbjct: 157 EAARKLIQ--KGKTAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGL 213

Query: 137 GRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLN 182
           GR+G + WA +  G  PDI+T+ KP+  G+PIGAV+ + K+A ++N
Sbjct: 214 GRTG-YLWAHEAYGVEPDIMTLAKPLAGGLPIGAVLVTEKVASAIN 258

Length = 382

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score = 80.4 bits (198), Expect = 4e-17
 Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 17/192 (8%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK------PWVHV 54
           S+A D+A+++++  T R  I+    AYHG     L  +  A   SS+K+      P V  
Sbjct: 123 SDAVDMAIKVSKFSTRRPWILAFIGAYHGQT---LGATSVAAFQSSQKRGFSPLMPNVVW 179

Query: 55  IPFPDTYRGEFSADDPQAAQKYAQAARNIME----AH---RDNIATLICEPVFVVHGAVV 107
           IP+P+ YR  +  +  +   +      + +E    +H    D +A L  EP+    G VV
Sbjct: 180 IPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVV 239

Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMP 167
           PP  +   +   + E G +++ DE+Q G+GR+G  F A +     PD+I  GK + +GM 
Sbjct: 240 PPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWF-ASEWFEVKPDLIIFGKGVASGMG 298

Query: 168 IGAVITSRKIAE 179
           +  VI  +++ +
Sbjct: 299 LSGVIGRKELMD 310

Length = 457

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score = 80.2 bits (198), Expect = 5e-17
 Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 35/193 (18%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHV 54
           +EAN+ AL+LAR Y      + +  IV    A+HG            F +S+  +P    
Sbjct: 106 AEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRT---------LFTVSAGGQP---- 152

Query: 55  IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR----DNIATLICEPVFVVHGAVVPP- 109
                    ++S D          AA N + +      D    +I EP+    G V+P  
Sbjct: 153 ---------KYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIVEPI-QGEGGVIPAD 202

Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIG 169
             +L  + +       ++I DE+Q G+GR+G   +A+   G  PD++T  K +G G PIG
Sbjct: 203 KAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHYGVTPDVLTTAKALGGGFPIG 261

Query: 170 AVITSRKIAESLN 182
           A++T+ K A  + 
Sbjct: 262 AMLTTEKCASVMT 274

Length = 406

>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated

 Score = 80.0 bits (198), Expect = 6e-17
 Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 38/203 (18%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVN-LLLDIS-----PRAFMLSSEKKPWVH- 53
           ++AN   L+ ARA TGR  I+V +  YHGTV+ + +D+       R  +L          
Sbjct: 140 TDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATT 199

Query: 54  -VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
            V+ F D            AA + A A  ++        A ++ EP     G V+P PG+
Sbjct: 200 RVVEFNDL-----------AALEAALADGDV--------AAVLAEPAMTNIGMVLPEPGF 240

Query: 113 LSLMYDYIHEIGGVVIADE---IQCGM-GRSGSHFWAFQTQGAVPDIITVGKPMGNGMPI 168
              + +     G +++ DE   I  G  G + +H       G  PD + VGKP+  G+P 
Sbjct: 241 HEALRELTRRYGTLLVIDETHTISSGPGGYTRAH-------GLEPDFLVVGKPIAGGVPC 293

Query: 169 GAVITSRKIAESLNCLDDNRPSG 191
                S ++AE       + P G
Sbjct: 294 AVYGFSAELAERAQAAKASAPPG 316

Length = 453

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 79.7 bits (197), Expect = 8e-17
 Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 24/180 (13%)

Query: 7   ALQLARAYTGRQNIVVVDAAYHG----TVNLLLDISPR----AFMLSSEKKPWVHVIPFP 58
           AL+L +  TGR  ++     YHG     ++L+ ++ P+    A +      P V  +P+P
Sbjct: 143 ALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALL------PGVQFLPYP 196

Query: 59  DTYRGEF---SADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHG--AVVPPP-GW 112
             YR  F        +A   Y +   +  E+     A +I E   VV G   V+P P  W
Sbjct: 197 YDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILE---VVQGEGGVIPAPIEW 253

Query: 113 LSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVI 172
           L  +     E G  +I DEIQ G GR+G   +AF+  G +PD++ + K +G  +P+  V+
Sbjct: 254 LRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEHAGIIPDVVVLSKAIGGSLPLAVVV 312

Length = 464

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score = 79.4 bits (196), Expect = 9e-17
 Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 24/194 (12%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNL----LLDISP--RAF---MLS 45
           SE+ D AL++A AY        R  ++  +  YHG V      +  I P  +AF   +  
Sbjct: 116 SESVDTALKIALAYHRARGEGSRTRLIGRERGYHG-VGFGGISVGGIVPNRKAFGALLPG 174

Query: 46  SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVFVVHG 104
            +  P        D  R  FS   P+   + A     ++  H    IA +I EPV    G
Sbjct: 175 VDHLPHTL-----DLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTG 229

Query: 105 AVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGN 164
            ++PP G+L  + +   + G ++I DE+  G GR G+ F A Q  G  PD++T  K + N
Sbjct: 230 VLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAA-QYFGVTPDLLTCAKGLTN 288

Query: 165 G-MPIGAVITSRKI 177
           G +P+GAV  S +I
Sbjct: 289 GAIPMGAVFVSSEI 302

Length = 442

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score = 77.8 bits (192), Expect = 3e-16
 Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 22/195 (11%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDIS---PRAFMLSS--EKK 49
           SEAN+ A+++A  +       G+  I+    +YHG     L +S    R     S  E  
Sbjct: 101 SEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDY 160

Query: 50  PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIME---AHRDNIATLICEPVFVVHG-A 105
           P    I  P  YR       P      A      +E   A    IA  I EP+    G A
Sbjct: 161 P---TISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEH--IAAFIAEPIIGAAGAA 215

Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
           VVPP G+  ++ +       + IADE+  G+GR+G+ F A +  G  PDI+T+GK +G G
Sbjct: 216 VVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMF-AMEHWGVEPDIMTLGKGLGAG 274

Query: 166 -MPIGAVITSRKIAE 179
             PI A + S ++ E
Sbjct: 275 YTPIAATVVSDRVME 289

Length = 447

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score = 77.9 bits (192), Expect = 3e-16
 Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 29/189 (15%)

Query: 1   SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHV 54
           +EAN+ AL+LAR Y        +  IV    ++HG            F +S   +P    
Sbjct: 102 AEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRT---------LFTVSVGGQP---- 148

Query: 55  IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAVVPP-PGW 112
                 Y   F A  P   +          +A   D    +I EP+    G VVP  P +
Sbjct: 149 -----KYSQGF-APLPGGIKHAPYNDLAAAKALISDKTCAVIVEPI-QGEGGVVPADPAF 201

Query: 113 LSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVI 172
           L  + +       ++I DE+Q G+GR+G   +A+   G  PDI+T  K +G G PIGA++
Sbjct: 202 LKGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHYGVTPDILTSAKALGGGFPIGAML 260

Query: 173 TSRKIAESL 181
           T+ +IA  L
Sbjct: 261 TTTEIAAHL 269

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score = 77.5 bits (191), Expect = 3e-16
 Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 25/183 (13%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFM---LSSEKKPW-VHVIP 56
           +EA + A+++ARAYTGR  ++    A+HG          R  +   L+ +  P+ V   P
Sbjct: 111 AEAVENAVKIARAYTGRPGVIAFGGAFHG----------RTLLTMALTGKVAPYKVGFGP 160

Query: 57  FPDTYRGEFSADDPQAAQ--KYAQAARNIMEAHR-----DNIATLICEPVFVVHGAVVPP 109
           FP +    F A  P         +A  ++    +     D +A ++ EP+    G  V P
Sbjct: 161 FPGSI---FHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAP 217

Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIG 169
           P ++S +     E G ++IADE+Q G  R+G  F A +     PD+IT+ K +G GMPI 
Sbjct: 218 PEFMSALRTLCDEHGILLIADEVQTGFARTGKLF-AMEYYDVKPDLITMAKSLGGGMPIS 276

Query: 170 AVI 172
           AV+
Sbjct: 277 AVV 279

Length = 421

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score = 77.1 bits (190), Expect = 6e-16
 Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 36/215 (16%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFM---LSSEKKPW------ 51
           +EA + A+++ARA TGR  ++     +HG          R FM   L+ +  P+      
Sbjct: 111 AEAVENAVKIARAATGRSAVIAFGGGFHG----------RTFMGMSLTGKVVPYKVGFGA 160

Query: 52  ----VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD--NIATLICEPVFVVHGA 105
               V+ +PFP    G  S +   AA         + +A  D   +A +I EPV    G 
Sbjct: 161 MMPDVYHVPFPVELHG-VSVEQSLAALD------KLFKADVDPQRVAAIIIEPVQGEGGF 213

Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
              P  ++  + +   + G ++IADE+Q G  R+G  F A +      D+ T+ K +  G
Sbjct: 214 YPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF-AMEHHEVAADLTTMAKGLAGG 272

Query: 166 MPIGAVITSRKIAESLNCLDDNRPSGKYLVRPLGI 200
            P+ AV T R  AE ++        G Y   PLGI
Sbjct: 273 FPLAAV-TGR--AEIMDAPGPGGLGGTYGGNPLGI 304

Length = 425

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score = 76.5 bits (188), Expect = 8e-16
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)

Query: 1   SEANDLALQLARAYTGRQN-------IVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH 53
           +EAN+ A++L R +   Q        IV    ++HG        +  A   +++ K    
Sbjct: 108 TEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGR-------TLAAVTATAQPKYQEG 160

Query: 54  VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
             P P  +R     D        A            ++A ++ EP+    G +   PG+L
Sbjct: 161 YEPLPGGFRYVDFNDVEALEAAMAGG----------DVAAVMLEPIQGEGGVMPAAPGFL 210

Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
           + +     +   +++ DEIQCGMGR+G+ F  +Q Q   PDI+T+ K +G G PIGA++ 
Sbjct: 211 ARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQ-VTPDIVTLAKALGGGFPIGAMLA 269

Query: 174 SRKIAESL 181
             K+AE++
Sbjct: 270 GPKVAETM 277

Length = 408

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score = 76.0 bits (187), Expect = 1e-15
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 33/186 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFP-- 58
           SEA + A+++ARA T R  ++    AYHG  +  L ++ +             V P+   
Sbjct: 112 SEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGK-------------VNPYSAG 158

Query: 59  ------DTYRGEF-------SADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA 105
                   YR  +       S DD  A+ +  +  +N  +A  ++IA +I EPV    G 
Sbjct: 159 MGLMPGHVYRALYPCPLHGVSEDDAIASIE--RIFKN--DAAPEDIAAIIIEPVQGEGGF 214

Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
               P ++  +     E G ++IADE+Q G GR+G+  +A +  G   D+ T  K +  G
Sbjct: 215 YAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMGVAADLTTFAKSIAGG 273

Query: 166 MPIGAV 171
            P+  V
Sbjct: 274 FPLAGV 279

Length = 425

>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 34/191 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA    L+LARAYTGR+ I+  +  YHG  +        +F++ +     V  +  PD 
Sbjct: 165 TEACMGVLRLARAYTGREKIIKFEGCYHGHAD--------SFLVKAGSG--VATLGLPD- 213

Query: 61  YRGEFSADDPQAAQKYA--------QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                S   P+AA            +A + + EA++  IA +I EPV    G +VP   +
Sbjct: 214 -----SPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEF 268

Query: 113 LSLMYDYIHEIGGVVIADEIQCGM----GRSGSHFWAFQTQGAVPDIITVGKPMGNGMPI 168
           L  + +   E G +++ DE+  G     G +  +F      G  PD+ T+GK +G G+P+
Sbjct: 269 LEGLREITKENGALLVFDEVMTGFRIAYGGAQEYF------GITPDLTTLGKVIGGGLPV 322

Query: 169 GAVITSRKIAE 179
           GA    R+I E
Sbjct: 323 GAYGGRREIME 333

Length = 474

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 75.2 bits (186), Expect = 2e-15
 Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 29/194 (14%)

Query: 7   ALQ--LARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW------VHVIPFP 58
           ALQ    R   GR   + +   YHG     + +  R  M       +          PFP
Sbjct: 122 ALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGM----HALYTPLLFEQVTAPFP 177

Query: 59  DTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA---VVPPPGWLSL 115
                    D     Q    A   ++E H   IA  I EP  +V GA   +   P +L+ 
Sbjct: 178 --------PDG--YEQATLDALEALLEKHAGEIAAFIVEP--LVQGAGGMLFYDPRYLAE 225

Query: 116 MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITS 174
           +       G ++I DEI  G GR+G+ F A +  G  PDI+ + K +  G +P+ A + +
Sbjct: 226 LRRICDRHGVLLIFDEIATGFGRTGTLF-ACEQAGVSPDIMCLSKGLTGGYLPLAATLCT 284

Query: 175 RKIAESLNCLDDNR 188
            +I E+    D  +
Sbjct: 285 AEIFEAFYSDDRAK 298

Length = 423

>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional

 Score = 75.0 bits (184), Expect = 2e-15
 Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 28/178 (15%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA + AL+ AR YTGR+ I+ +  A+HG              LS+  KP          
Sbjct: 91  TEAVEAALKFARLYTGRKEIIAMTNAFHGRT---------MGALSATWKP---------K 132

Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNI----ATLICEPVFVVHGAVVPPPGWLSLM 116
           YR +F    P     +     N +EA ++ I    A +I EP+    G V     ++  +
Sbjct: 133 YREDFEPLVP----GFKHIPFNDVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTL 188

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITS 174
            D   ++G ++IADE+Q G+ R+G  F A +     PDI+T+GK +GNG+P+   +T+
Sbjct: 189 RDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYKVEPDIVTMGKGIGNGVPVSLTLTN 244

Length = 364

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 53/200 (26%)

Query: 2   EANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSS--------- 46
           EAN+ A +LAR Y        +  I+    ++HG          R     S         
Sbjct: 108 EANEAAFKLARRYACDRHGPEKTEIIAFHNSFHG----------RTLFTVSVGGQPKYSD 157

Query: 47  --EKKPW--VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVV 102
               KP    HV PF D                   A + +++   D+   ++ EP+   
Sbjct: 158 GFGPKPADITHV-PFNDL-----------------AAVKAVID---DHTCAVVVEPI-QG 195

Query: 103 HGAVVPP-PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKP 161
            G V+P  P +L  + +   +   ++I DE+Q GMGR+G   +A+   G  PDI+T  K 
Sbjct: 196 EGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG-DLFAYMHYGVTPDILTSAKA 254

Query: 162 MGNGMPIGAVITSRKIAESL 181
           +G G PIGA++T+ +IA   
Sbjct: 255 LGGGFPIGAMLTTAEIASHF 274

Length = 403

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score = 74.2 bits (183), Expect = 5e-15
 Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 39/205 (19%)

Query: 1   SEANDLALQLARAY------------TGRQNIVVVDAAYHGTVNLLLDISPRAFM--LSS 46
           SEAND  L++ R Y              R+N       YHG+      +    +M     
Sbjct: 121 SEANDTVLRMVRHYWALKGKPQKKVIISRKN------GYHGSTVAGASLGGMKYMHEQGD 174

Query: 47  EKKPWVHVIPFPDTYRGEFSADDP-----QAAQKYAQAARNIMEAHRDNIATLICEPVFV 101
              P +  I  P  + GE     P      AA+   Q    I+E   DN+A  I EP+  
Sbjct: 175 LPIPGIVHIDQPYWF-GEGGDMTPEEFGLAAAR---QLEAKILELGADNVAAFIGEPIQG 230

Query: 102 VHGAVVPPPGWLSLMYDYIHEI----GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT 157
             G ++PP  +    +  I  I      +++ADE+ CG GR+G  ++  Q  G  PD++T
Sbjct: 231 AGGVIIPPATY----WPEIQRICRKYDILLVADEVICGFGRTG-EWFGSQHFGIKPDLMT 285

Query: 158 VGKPMGNG-MPIGAVITSRKIAESL 181
           + K + +G +P+GAV    ++AE L
Sbjct: 286 IAKGLTSGYIPMGAVGVGDRVAEVL 310

Length = 456

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 36/204 (17%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHG-TV---NLL-LDISPRAFMLSSEKK 49
           SEAND  ++L   Y        ++ I+     YHG T+   +L  L  + R+F L     
Sbjct: 119 SEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLP---L 175

Query: 50  PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARN----IMEAHRDNIATLICEPVFVVHGA 105
             +     P  YR  F            + A      I+    D IA  I EPV    G 
Sbjct: 176 DRILHTGCPHYYR--FGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGV 233

Query: 106 VVPPPGWLSLMYDYIHEIGGV-------VIADEIQCGMGRSGSHFWAFQTQGAVPDIITV 158
           +VPP         Y  +I  V       ++ADE+ CG GR+G+ F   +T G  PDI+ +
Sbjct: 234 IVPPKT-------YWEKIQAVLRKYDILLVADEVICGFGRTGNMF-GCETFGIKPDILVM 285

Query: 159 GKPMGNG-MPIGAVITSRKIAESL 181
            K + +   P+ AV+ + K+ + +
Sbjct: 286 SKQLSSSYQPLSAVLMNEKVYDPI 309

Length = 460

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score = 73.2 bits (180), Expect = 9e-15
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 89  DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT 148
            N+A  I EP+    G +VP  G+L  +Y+   +   ++I DEIQ G+GR+G    A   
Sbjct: 177 PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG-KLLAHDH 235

Query: 149 QGAVPDIITVGKPMGNGM-PIGAVITSRKIAESLN 182
           +G  PDI+ +GK +  G+ PI AV+ +  +   + 
Sbjct: 236 EGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIK 270

Length = 400

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score = 73.5 bits (180), Expect = 9e-15
 Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 9/183 (4%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW---VHVIPF 57
           +EA + A+++ARA+TGR  ++     +HG   + + ++ +         P+   V+ +P+
Sbjct: 111 AEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPY 170

Query: 58  PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
           P    G  + D   A ++  ++     +     +A +I EPV    G  V P   ++ + 
Sbjct: 171 PSDLHGISTQDSLDAIERLFKS-----DIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIR 225

Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
               E G V+IADE+Q G  R+G  F A       PD++T+ K +  GMP+  V+ +  I
Sbjct: 226 RLCDEHGIVMIADEVQSGFARTGKLF-AMDHYADKPDLMTMAKSLAGGMPLSGVVGNANI 284

Query: 178 AES 180
            ++
Sbjct: 285 MDA 287

Length = 421

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 74/316 (23%), Positives = 127/316 (40%), Gaps = 85/316 (26%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF--MLSSEKKPWVHVIPFP 58
           +EAN+ A+++AR  TG+Q I+    ++HG          R F  M ++ +          
Sbjct: 94  AEANEAAIKIARKATGKQEIITFQNSFHG----------RTFGSMSATGQ---------- 133

Query: 59  DTYRGEFSADDPQAAQKYAQAARNIMEAHR----DNIATLICEPVFVVHGAVVPPPGWLS 114
           D  +  F    P     ++ A  N + + +     N A ++ E V    G +     ++ 
Sbjct: 134 DKIKDGFGDGVPH----FSYAIFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKDFVK 189

Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITS 174
            + DY  E G ++I DE+Q GMGR+G  + AF+  G  PDI T+ K + NG+P+GA++  
Sbjct: 190 ALADYCQETGILLIVDEVQTGMGRTGKLY-AFEHYGIEPDIFTLAKGLANGVPVGAMLAK 248

Query: 175 RKIAESL-----------------------------NCLDDNRPSGKYL----------- 194
             +  +                                L+    +G YL           
Sbjct: 249 SSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDK 308

Query: 195 -----VRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCL 249
                VR LG        +I +  T  L +     ++  +IV   G   NV+  LP + L
Sbjct: 309 ETVTTVRGLGY-------MIGIETTADLSQLVEAARDKGLIVLTAGT--NVIRLLPPLTL 359

Query: 250 TTENVLFIVSTLNRIF 265
           T E +   ++ L+ +F
Sbjct: 360 TKEEIEQGIAILSEVF 375

Length = 375

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 45/195 (23%)

Query: 2   EANDLALQLAR--AY------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--- 49
           EA + A++LAR   Y        +  IV     +HG T+     IS     +S++     
Sbjct: 105 EAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGA---IS-----MSTDPDSRT 156

Query: 50  ------PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVH 103
                 P    IP+ +                  +A    +E H  N+   I EP+    
Sbjct: 157 NFGPYVPGFKKIPYNNL-----------------EALEEALEDHGPNVCAFIVEPIQGEA 199

Query: 104 GAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG 163
           G VVP  G+L  + +   +   ++IADEIQ G+GR+G        +   PDI+ +GK + 
Sbjct: 200 GVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK-LLCVDHENVKPDIVLLGKALS 258

Query: 164 NGM-PIGAVITSRKI 177
            G+ P+ AV+    +
Sbjct: 259 GGVYPVSAVLADDDV 273

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 68.9 bits (170), Expect = 3e-13
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 36/188 (19%)

Query: 7   ALQLARAYTGRQNIVVVDAAYHGTVN-LLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEF 65
           A++LAR YTGR  I+  +  YHG  + LL+     A  L             PD      
Sbjct: 122 AIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGL-----------PD------ 164

Query: 66  SADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
           S   P+   K+         +A   + E + D IA +I EPV    G V P PG+L  + 
Sbjct: 165 SPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLR 224

Query: 118 DYIHEIGGVVIADEIQCG--MGRSG--SHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
           +   E G ++I DE+  G  +   G   ++      G  PD+ T+GK +G G+P+GA   
Sbjct: 225 ELCDEHGALLIFDEVMTGFRVALGGAQGYY------GVTPDLTTLGKIIGGGLPVGAFGG 278

Query: 174 SRKIAESL 181
            R+I E L
Sbjct: 279 RREIMEQL 286

Length = 426

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score = 68.7 bits (169), Expect = 4e-13
 Identities = 61/198 (30%), Positives = 90/198 (45%), Gaps = 32/198 (16%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNL----LLDISP--RAF---MLS 45
           SE+ D AL++A AY        R  ++  +  YHG V      +  I    + F   +  
Sbjct: 119 SESVDTALKIALAYHRARGQGTRTRLIGRERGYHG-VGFGGISVGGIVNNRKMFGGLLPG 177

Query: 46  SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVFVVHG 104
            +  P    +P        FS   P+   + A     ++  H    IA +I EP+    G
Sbjct: 178 VDHLPHTLDLP-----ENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAG 232

Query: 105 AVVPPPGWLSLMYDYIHEI----GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGK 160
            +VPP G+L      + EI    G ++I DE+  G GR G+ F A +  G  PDIIT  K
Sbjct: 233 VLVPPKGYL----QRLREICDKHGILLIFDEVITGFGRLGAAF-AAERFGVTPDIITFAK 287

Query: 161 PMGNG-MPIGAVITSRKI 177
            + NG +P+GAVI S +I
Sbjct: 288 GLTNGAIPMGAVIASDEI 305

Length = 445

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 8/167 (4%)

Query: 3   ANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFP-DTY 61
           A + AL+LAR  TGR N+V    A+HG     L ++   F       P  +V   P D Y
Sbjct: 111 AVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGY 170

Query: 62  RGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIH 121
            G    D     +K  + + + +    D  A +I E V    G  V    WL  +     
Sbjct: 171 LGG-DVDTIAYFEKLLEDSSSGV----DLPAAVILETVQGEGGINVASDEWLQRLEKLCR 225

Query: 122 EIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMP 167
               ++I D+IQ G GR+G  F++F+  G  PDI+ + K + G G+P
Sbjct: 226 RHDILLIVDDIQAGCGRTG-TFFSFEPAGIEPDIVCLSKSISGYGLP 271

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 48/196 (24%)

Query: 1   SEANDLALQLAR--AY------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK-- 49
           +EA + A++ AR  AY        +  I+  +  +HG T+         A  LSSE++  
Sbjct: 107 AEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMA--------AVSLSSEEEYK 158

Query: 50  -------PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVV 102
                  P +  IP+ D                       +  A   N A  + EP+   
Sbjct: 159 RGFGPMLPGIKKIPYGD--------------------LEALKAAITPNTAAFLVEPIQGE 198

Query: 103 HGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM 162
            G  +PP G+L    +   E   + IADEIQ G+GR+G  F A       PD+  +GK +
Sbjct: 199 AGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLF-ACDWDNVTPDMYILGKAL 257

Query: 163 GNGM-PIGAVITSRKI 177
           G G+ PI  V  +R I
Sbjct: 258 GGGVFPISCVAANRDI 273

Length = 396

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 65.2 bits (159), Expect = 5e-12
 Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 18/188 (9%)

Query: 3   ANDLALQL--ARAYTGRQNIVVVDAAYHG-TVNLLLDISPRAFM--LSSEKKPWVHVIPF 57
           A  +ALQ   A+    R     + + YHG T + +    P   M  L +   P  + +P 
Sbjct: 120 AMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQ 179

Query: 58  PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA---VVPPPGWLS 114
           P    GE   D+        +  ++++E   D IA LI EP  VV GA       P +L 
Sbjct: 180 PSIKFGEEWNDEA------IEPLQDLLEQKGDEIAALILEP--VVQGAGGMYFYSPTYLV 231

Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVIT 173
              +   + G ++I DEI  G GR+G  F A +  G VPDI+ +GK +  G + + A IT
Sbjct: 232 KARELCDQYGVLLIFDEIATGFGRTGKLF-ALEHAGVVPDIMCIGKALTGGYLTLSATIT 290

Query: 174 SRKIAESL 181
           +  IA+++
Sbjct: 291 TEAIAQTI 298

Length = 429

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score = 64.7 bits (158), Expect = 8e-12
 Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 38/190 (20%)

Query: 1   SEANDLALQLARAYTGRQN------IVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVH 53
           +EAN+ A++LAR + GR++      I+  D ++HG T+         A M +S K  W  
Sbjct: 103 AEANEGAIKLARKW-GRKHKNGAYEIITFDHSFHGRTL---------ATMSASGKPGW-- 150

Query: 54  VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR----DNIATLICEPVFVVHGAVVPP 109
                DT    F+   PQ    + +A  N + +      D    ++ EPV    G V+P 
Sbjct: 151 -----DTI---FA---PQVP-GFPKAELNDIASVEKLITDKTVAVMLEPV-QGEGGVIPA 197

Query: 110 -PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPI 168
              ++  +     + G ++I DE+Q G GR+G+ F A++  G  PDI+T+GK +G G+P+
Sbjct: 198 TREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLF-AYELSGIEPDIMTLGKGIGGGVPL 256

Query: 169 GAVITSRKIA 178
            A++   ++A
Sbjct: 257 AALLAKAEVA 266

Length = 395

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 2/96 (2%)

Query: 83  IMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH 142
           I E   D IA  + EP+    G V+PP G+L  + +   +   ++IADEIQ G+ R+G  
Sbjct: 217 IFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKM 276

Query: 143 FWAFQTQGAVPDIITVGKPMGNGM-PIGAVITSRKI 177
             A   +   PD++ +GK +G G+ P+ AV+  + +
Sbjct: 277 L-ACDWEEVRPDVVILGKALGGGVIPVSAVLADKDV 311

Length = 474

>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 28/179 (15%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA    +++ARAYTGR  I+     YHG  +L+L                V     P T
Sbjct: 119 TEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVL----------------VAAGSGPST 162

Query: 61  YRGEFSADDPQA-AQKYA-------QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                SA  P++ AQ+         +A +  ++   D +A ++ EP+    G V P PG+
Sbjct: 163 LGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGF 222

Query: 113 LSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT-QGAVPDIITVGKPMGNGMPIGA 170
           L  + +  HE G +VI DE+          +   Q   G  PD+  +GK +G G+PIGA
Sbjct: 223 LEAVNELAHEAGALVIYDEVITAF---RFMYGGAQDLLGVEPDLTALGKIIGGGLPIGA 278

Length = 428

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score = 62.1 bits (151), Expect = 6e-11
 Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 42/208 (20%)

Query: 1   SEANDLALQLARAYT---GRQN---IVVVDAAYHGTVNLLLDIS-----------PRAFM 43
           SEAND  ++L   Y    GR N    +    +YHG+  +   +S           P  F+
Sbjct: 161 SEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFV 220

Query: 44  LSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARN-IMEAHRDNIATLICEPVFVV 102
           L ++  P       P     EFS        + A    N I++   + IA  I EPV   
Sbjct: 221 LHTDC-PHYWRFHLPGETEEEFST-------RLADNLENLILKEGPETIAAFIAEPVMGA 272

Query: 103 HGAVVPPPGWLSLMYDYIHEIGGVV-------IADEIQCGMGRSGSHFWAFQTQGAVPDI 155
            G V+PPP        Y  +I  V+       IADE+ C  GR G+ F         PD+
Sbjct: 273 -GGVIPPPA------TYFEKIQAVLKKYDILFIADEVICAFGRLGTMF-GCDKYNIKPDL 324

Query: 156 ITVGKPMGNG-MPIGAVITSRKIAESLN 182
           +++ K + +  MPIGAV+ S +I++ ++
Sbjct: 325 VSLAKALSSAYMPIGAVLVSPEISDVIH 352

Length = 504

>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 7/105 (6%)

Query: 81  RNIMEAHRDNIATLICEPVFVVHGA---VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG 137
             +M AHR  IA +I EP+  V GA    +  P WL  +       G ++IADEI  G G
Sbjct: 195 ARLMAAHRHEIAAVILEPI--VQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFG 252

Query: 138 RSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIAESL 181
           R+G  F A +  G  PDI+ +GK +  G M + A +T+R++AE++
Sbjct: 253 RTGKLF-ACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETI 296

Length = 428

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score = 61.5 bits (150), Expect = 8e-11
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 79  AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGR 138
            AR   E H  +IA  I EP+    G     P + + M +   E   ++I DE+Q G+G 
Sbjct: 214 QARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGL 273

Query: 139 SGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLDDN 187
           +G+  WA+Q  G  PDI+  GK       +  ++  R++ E    ++DN
Sbjct: 274 TGT-AWAYQQLGVRPDIVAFGKK----TQVCGIMAGRRVDE----VEDN 313

Length = 443

>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 34/193 (17%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLL----------DISPRAFMLSSEKKP 50
           +EA   A++LAR  TGR  I+     YHG  + LL          D        +    P
Sbjct: 120 TEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVD-TDLAHP 178

Query: 51  WVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPP 110
               +P+ D                  Q  + +M +    +A +I EP+    G V+P P
Sbjct: 179 LTLSLPYNDF-----------------QIFQTVMNSLGHRVAGVIFEPICANMGVVLPKP 221

Query: 111 GWLSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPI 168
           G++  +       G + I DE+  G  + + G    A       PDI   GK +G G+P 
Sbjct: 222 GFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGG----AAAIYHVKPDITVYGKILGGGLPA 277

Query: 169 GAVITSRKIAESL 181
            AV+  + I + L
Sbjct: 278 AAVVAHKSIMDHL 290

Length = 433

>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 52/203 (25%), Positives = 70/203 (34%), Gaps = 70/203 (34%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           S+A   A++LARAYTGR  +     A H                           PF   
Sbjct: 114 SDATSAAVRLARAYTGRDLVAR--CADH---------------------------PF--- 141

Query: 61  YRGEFSADD------------PQAAQKYA--------QAARNIMEAHRDNIATLICEPVF 100
               FS DD            P +              +   + E H   IA +I EP  
Sbjct: 142 ----FSTDDWFIGTTPMSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPAT 197

Query: 101 VVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFW----AFQTQGAVPDII 156
                  P  G+L  +    HE G + I DE+  G  R     W    A +  G VPD+ 
Sbjct: 198 ADE----PQDGFLHEVRRLCHENGALFILDEMITGF-R-----WHMRGAQKLYGIVPDLS 247

Query: 157 TVGKPMGNGMPIGAVITSRKIAE 179
             GK +GNG  + A+   R+  E
Sbjct: 248 CFGKALGNGFAVSALAGKREYME 270

Length = 431

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 60.0 bits (145), Expect = 3e-10
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 56  PFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPPGWLS 114
           P PD Y  E        A + A A + + E     I  LI EP     G + +  P +L 
Sbjct: 202 PSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLR 261

Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVIT 173
              +     G  +IADEI  G GR+G+ F A +  G +PD++ + K +  G +P+ AV+ 
Sbjct: 262 RARELCDAHGAFLIADEIATGFGRTGTLF-ACEQAGVMPDLLCLSKGLTGGFLPLSAVLA 320

Query: 174 SRKIAESLNCLDDNR 188
           ++++ ++   LDD+R
Sbjct: 321 TQQLYDAF--LDDSR 333

Length = 472

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 28/174 (16%)

Query: 7   ALQLARAYTGRQNIVVVDAAYHG--------TVNLLLDISPRAFMLSSEKKPWVHVIPFP 58
           AL+LAR  TGR NIV     +HG        T N        +        P  +V   P
Sbjct: 119 ALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGN--------SHKRQGAGVPLNNVTRMP 170

Query: 59  DTYRGEFSADDPQAA---QKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSL 115
             Y G F  D    A   +    ++  +     D  A +I E V    G  V    WL  
Sbjct: 171 --YDGYFGGDVDTLAYLEKLLEDSSSGV-----DLPAAVIVETVQGEGGINVASAEWLQR 223

Query: 116 MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPI 168
           +     +   ++I D+IQ G GR+G+ F++F+  G  PDI+T+ K + G G+P+
Sbjct: 224 LAKLCRKHDILLIVDDIQAGCGRTGT-FFSFERAGITPDIVTLSKSISGYGLPM 276

Length = 425

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 16/97 (16%)

Query: 89  DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVV-------IADEIQCGMGRSGS 141
           D IA  I EPV    G V PP G       Y   I  V+       IADE+  G GR GS
Sbjct: 219 DTIAAFIAEPVLGTGGIVPPPAG-------YWPAIQAVLKKYDILLIADEVVTGFGRLGS 271

Query: 142 HFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKI 177
            F +    G  PD+ITV K + +   P+   I   K+
Sbjct: 272 MFGS-DHYGIEPDLITVAKGLTSAYAPLSGSIVGEKV 307

Length = 461

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 78  QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG 137
           Q    I+E   +N+A  + EP     G + PP  +   +     +   ++ ADE+  G G
Sbjct: 210 QLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFG 269

Query: 138 RSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIAESL 181
           R+G  F A +  G  PD +++ K + +G +P+G ++ S++IAE+L
Sbjct: 270 RTGEWF-AHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEAL 313

Length = 460

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 12/119 (10%)

Query: 69  DPQAAQKYAQAARNIMEAHRDN-IATLICEPVFVVHGA---VVPPPGWLSLMYDYIHEIG 124
            PQ   +Y ++    +E   D  +A +I EP+  V GA          +  +     +  
Sbjct: 182 SPQEISEYLRS----LELLIDETVAAIIIEPI--VQGAGGMRFHDVALIEGVRTLCDKHD 235

Query: 125 GVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIAESLN 182
            ++IADEI  G GR+G  F A    G  PDI+ VGK +  G M   A + + K+A+ ++
Sbjct: 236 ILLIADEIATGFGRTGELF-ATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLIS 293

Length = 422

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 11/187 (5%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHV 54
           S A ++AL+++  Y        ++  V +  +YHG     + +   A    + K   +  
Sbjct: 117 SSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDT 176

Query: 55  I--PFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPPG 111
           I  P PD Y         + +++        +  H D IA +I EP+    G + +  P 
Sbjct: 177 IKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPV 236

Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGA 170
           +L L+ +     G  +I DEI  G GR+G+ F A +  G  PD + + K +  G +P+ A
Sbjct: 237 YLKLLREACDRYGVHLIHDEIAVGFGRTGTMF-ACEQAGIRPDFLCLSKALTGGYLPLAA 295

Query: 171 VITSRKI 177
           V+T+  +
Sbjct: 296 VLTTDTV 302

Length = 466

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 65  FSADDPQAAQKYAQAARNIMEAHR------DNIATLICEPVFVVHGAVVPPPGWLSLMYD 118
           F  D P   Q  A     + +A         +IA  I EP+    G     P +L  M  
Sbjct: 187 FPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRA 246

Query: 119 YIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIA 178
              E   ++I DE+Q G+G +G+  WA+Q  G  PDI+  GK       +  ++  R++ 
Sbjct: 247 LCDEHDALLIFDEVQTGVGLTGT-AWAYQQLGVQPDIVAFGKK----TQVCGIMAGRRVD 301

Query: 179 E 179
           E
Sbjct: 302 E 302

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 23/190 (12%)

Query: 12  RAYTGRQNIVVVDAAYHG-TVNLL----LDISPRAFMLSSEKKPWV---HVIPFPDTY-- 61
           R    ++  V +   YHG T+  L    + +   A+       P +   HV+  PD    
Sbjct: 141 RGRGDKREFVCLANGYHGETIGALGVTDVALFKDAY------DPLIRHAHVVASPDARGA 194

Query: 62  -RGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEP-VFVVHGAVVPPPGWLSLMYDY 119
             GE +AD    A +     R +       IA LI EP V    G  +  P +L  +   
Sbjct: 195 RPGETAAD---VAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRAL 251

Query: 120 IHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIA 178
               G  +IADEI  G GR+G+ F+A +  G  PD + + K +  G +P+  V++   I 
Sbjct: 252 CDRYGVHLIADEIAVGCGRTGT-FFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIF 310

Query: 179 ESLNCLDDNR 188
            +    D  R
Sbjct: 311 AAFYDDDVTR 320

Length = 453

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 88  RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQ 147
            + +A L+ EP+    G ++PP G+ + + +        +I DEIQ G+GR+G    A +
Sbjct: 186 PNTVAFLV-EPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK-LLAEE 243

Query: 148 TQGAVPDIITVGKPMGNGM-PIGAVITSRKI 177
            +G   D+  +GK +  G  P+ AV+++ ++
Sbjct: 244 HEGIEADVTLIGKALSGGFYPVSAVLSNSEV 274

Length = 401

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 50  PWVHVIPFPDTYR---GEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV 106
            W    PFP + +    E   ++ +  Q+  +   ++++     +A +I EP+    G  
Sbjct: 210 DWPQA-PFP-SLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDN 267

Query: 107 VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG--AVPDIITVGKPMGN 164
              P +   + D   +     I DE+Q G+G +G  FWA +       PD++T  K    
Sbjct: 268 HASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGK-FWAHEHWNLDDPPDMVTFSKKFQT 326

Query: 165 G 165
            
Sbjct: 327 A 327

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 223 RMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT 266
           R+ E  +I+   G++ N+L   P +CL  E+  F V  L+R+ T
Sbjct: 926 RLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLT 969

Length = 972

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
PRK05965	459	hypothetical protein; Provisional	100.0
KOG1404|consensus	442		100.0
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK07678	451	aminotransferase; Validated	100.0
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07483	443	hypothetical protein; Provisional	100.0
PRK07482	461	hypothetical protein; Provisional	100.0
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07481	449	hypothetical protein; Provisional	100.0
PRK06062	451	hypothetical protein; Provisional	100.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06148	1013	hypothetical protein; Provisional	100.0
PRK06917	447	hypothetical protein; Provisional	100.0
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	100.0
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07480	456	putative aminotransferase; Validated	100.0
PRK07036	466	hypothetical protein; Provisional	100.0
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	100.0
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	100.0
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	100.0
PLN02760	504	4-aminobutyrate:pyruvate transaminase	100.0
PRK06105	460	aminotransferase; Provisional	100.0
PRK06541	460	hypothetical protein; Provisional	100.0
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	100.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	100.0
PRK12403	460	putative aminotransferase; Provisional	100.0
PRK06149	972	hypothetical protein; Provisional	100.0
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	100.0
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	100.0
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	100.0
KOG1402|consensus	427		100.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	100.0
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	100.0
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK08297	443	L-lysine aminotransferase; Provisional	100.0
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	100.0
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK04612	408	argD acetylornithine transaminase protein; Provisi	100.0
KOG1403|consensus	452		100.0
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	100.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	100.0
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	100.0
KOG1401|consensus	433		100.0
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	100.0
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	100.0
PLN00144	382	acetylornithine transaminase	100.0
PRK03715	395	argD acetylornithine transaminase protein; Provisi	100.0
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	100.0
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	100.0
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	100.0
PRK07046	453	aminotransferase; Validated	100.0
PLN02624	474	ornithine-delta-aminotransferase	100.0
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	100.0
PRK08088	425	4-aminobutyrate aminotransferase; Validated	100.0
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	100.0
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	100.0
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK01278	389	argD acetylornithine transaminase protein; Provisi	100.0
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	100.0
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	100.0
PRK03244	398	argD acetylornithine aminotransferase; Provisional	100.0
PRK02936	377	argD acetylornithine aminotransferase; Provisional	100.0
KOG1405|consensus	484		100.0
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	100.0
PRK04260	375	acetylornithine aminotransferase; Provisional	100.0
PTZ00125	400	ornithine aminotransferase-like protein; Provision	100.0
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	100.0
PRK02627	396	acetylornithine aminotransferase; Provisional	100.0
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	100.0
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.98
PRK07505	402	hypothetical protein; Provisional	99.94
PRK13393	406	5-aminolevulinate synthase; Provisional	99.93
PLN02822	481	serine palmitoyltransferase	99.92
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.92
PRK09064	407	5-aminolevulinate synthase; Validated	99.92
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.92
PLN02955	476	8-amino-7-oxononanoate synthase	99.91
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.9
KOG1359|consensus	417		99.86
PRK13392	410	5-aminolevulinate synthase; Provisional	99.85
PRK07179	407	hypothetical protein; Provisional	99.84
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.84
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.83
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.8
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.8
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.8
PLN02483	489	serine palmitoyltransferase	99.79
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.76
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.75
PRK07682	378	hypothetical protein; Validated	99.72
KOG1360|consensus	570		99.72
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.7
PLN02721	353	threonine aldolase	99.69
PRK06225	380	aspartate aminotransferase; Provisional	99.69
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.67
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.66
PRK06108	382	aspartate aminotransferase; Provisional	99.66
PLN00175	413	aminotransferase family protein; Provisional	99.63
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.63
PRK07324	373	transaminase; Validated	99.63
PRK07777	387	aminotransferase; Validated	99.62
PRK06207	405	aspartate aminotransferase; Provisional	99.62
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.6
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.6
PRK05764	393	aspartate aminotransferase; Provisional	99.59
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.59
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.58
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.58
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.56
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.56
PRK06348	384	aspartate aminotransferase; Provisional	99.56
PRK08960	387	hypothetical protein; Provisional	99.55
PRK05957	389	aspartate aminotransferase; Provisional	99.55
KOG1357|consensus	519		99.54
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.54
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.54
PRK08361	391	aspartate aminotransferase; Provisional	99.54
PRK07681	399	aspartate aminotransferase; Provisional	99.53
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.53
PRK07683	387	aminotransferase A; Validated	99.52
PRK07568	397	aspartate aminotransferase; Provisional	99.52
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.52
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.52
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.51
PRK08912	387	hypothetical protein; Provisional	99.51
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.51
PRK12414	384	putative aminotransferase; Provisional	99.51
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.5
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.5
PRK08175	395	aminotransferase; Validated	99.5
PRK09082	386	methionine aminotransferase; Validated	99.5
PRK08068	389	transaminase; Reviewed	99.5
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.49
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.49
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.49
PRK08636	403	aspartate aminotransferase; Provisional	99.49
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.49
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.49
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.49
PRK06290	410	aspartate aminotransferase; Provisional	99.49
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.49
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.48
PRK07550	386	hypothetical protein; Provisional	99.48
PRK05942	394	aspartate aminotransferase; Provisional	99.48
PRK09148	405	aminotransferase; Validated	99.48
PRK06107	402	aspartate aminotransferase; Provisional	99.46
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.46
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.46
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.45
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.45
PTZ00433	412	tyrosine aminotransferase; Provisional	99.44
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.44
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.44
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.44
PRK06836	394	aspartate aminotransferase; Provisional	99.44
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.44
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.43
PRK08363	398	alanine aminotransferase; Validated	99.43
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.43
PRK07337	388	aminotransferase; Validated	99.43
PTZ00376	404	aspartate aminotransferase; Provisional	99.42
PRK06855	433	aminotransferase; Validated	99.42
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.42
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.42
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.42
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.42
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.42
PRK03321	352	putative aminotransferase; Provisional	99.41
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.41
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.41
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.41
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.4
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.4
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.4
PLN02656	409	tyrosine transaminase	99.4
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.39
PRK09265	404	aminotransferase AlaT; Validated	99.39
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.39
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.39
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.39
PLN02231	534	alanine transaminase	99.39
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.38
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.38
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.37
PLN02187	462	rooty/superroot1	99.37
PTZ00377	481	alanine aminotransferase; Provisional	99.37
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.37
PRK02948	381	cysteine desulfurase; Provisional	99.36
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.36
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.36
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.36
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.36
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.35
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.34
KOG0259|consensus	447		99.34
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.34
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.34
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.33
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.32
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.32
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.32
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.32
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.32
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.31
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.31
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.31
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.31
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.31
KOG1368|consensus	384		99.31
PLN02409	401	serine--glyoxylate aminotransaminase	99.31
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.3
PRK05839	374	hypothetical protein; Provisional	99.28
PRK09105	370	putative aminotransferase; Provisional	99.28
PRK10534	333	L-threonine aldolase; Provisional	99.27
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.27
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.26
PLN02397	423	aspartate transaminase	99.24
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.24
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.24
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.23
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.23
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.23
PRK08354	311	putative aminotransferase; Provisional	99.22
KOG0256|consensus	471		99.22
PRK07908	349	hypothetical protein; Provisional	99.22
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.21
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.21
PLN02672	1082	methionine S-methyltransferase	99.19
PRK14012	404	cysteine desulfurase; Provisional	99.18
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.15
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.15
PLN02651	364	cysteine desulfurase	99.14
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.14
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.14
PRK08637	388	hypothetical protein; Provisional	99.12
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.12
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.12
PRK09275	527	aspartate aminotransferase; Provisional	99.09
PLN02242	418	methionine gamma-lyase	99.08
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.07
PRK08249	398	cystathionine gamma-synthase; Provisional	99.06
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.06
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.06
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.05
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.04
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.04
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.04
PRK05367	954	glycine dehydrogenase; Provisional	99.04
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.04
PRK06767	386	methionine gamma-lyase; Provisional	99.03
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.03
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.03
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.02
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.01
KOG0257|consensus	420		99.01
PRK06460	376	hypothetical protein; Provisional	99.0
PRK07811	388	cystathionine gamma-synthase; Provisional	98.98
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	98.97
PRK12566	954	glycine dehydrogenase; Provisional	98.97
PRK08861	388	cystathionine gamma-synthase; Provisional	98.97
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	98.97
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	98.97
PRK09028	394	cystathionine beta-lyase; Provisional	98.95
PRK08045	386	cystathionine gamma-synthase; Provisional	98.93
PRK07050	394	cystathionine beta-lyase; Provisional	98.91
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	98.9
PRK07503	403	methionine gamma-lyase; Provisional	98.9
PRK06234	400	methionine gamma-lyase; Provisional	98.89
PRK08247	366	cystathionine gamma-synthase; Reviewed	98.89
PRK08114	395	cystathionine beta-lyase; Provisional	98.88
PRK05968	389	hypothetical protein; Provisional	98.88
PLN02880	490	tyrosine decarboxylase	98.88
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	98.88
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	98.87
PRK08776	405	cystathionine gamma-synthase; Provisional	98.86
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	98.86
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	98.85
PRK08064	390	cystathionine beta-lyase; Provisional	98.85
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	98.84
PRK07049	427	methionine gamma-lyase; Validated	98.84
PRK05967	395	cystathionine beta-lyase; Provisional	98.83
PRK07582	366	cystathionine gamma-lyase; Validated	98.82
KOG0634|consensus	472		98.82
PRK08574	385	cystathionine gamma-synthase; Provisional	98.82
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	98.81
PLN02590	539	probable tyrosine decarboxylase	98.8
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	98.79
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	98.79
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	98.79
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	98.78
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	98.76
PRK05939	397	hypothetical protein; Provisional	98.74
PRK02769	380	histidine decarboxylase; Provisional	98.72
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	98.7
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	98.69
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	98.67
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	98.67
PLN02509	464	cystathionine beta-lyase	98.65
KOG0633|consensus	375		98.64
KOG1358|consensus	467		98.64
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	98.64
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	98.64
PRK07269	364	cystathionine gamma-synthase; Reviewed	98.63
PLN03032	374	serine decarboxylase; Provisional	98.63
PRK04311	464	selenocysteine synthase; Provisional	98.62
PRK03080	378	phosphoserine aminotransferase; Provisional	98.62
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	98.59
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	98.58
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	98.57
PRK07671	377	cystathionine beta-lyase; Provisional	98.55
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	98.54
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	98.52
COG3844	407	Kynureninase [Amino acid transport and metabolism]	98.48
PLN02263	470	serine decarboxylase	98.47
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.45
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	98.45
KOG1549|consensus	428		98.44
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	98.44
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	98.4
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	98.34
PRK13237	460	tyrosine phenol-lyase; Provisional	98.29
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	98.29
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	98.27
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	98.21
KOG2862|consensus	385		98.2
PLN02368	407	alanine transaminase	98.19
KOG0053|consensus	409		98.18
KOG0258|consensus	475		98.18
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	98.11
KOG3846|consensus	465		98.1
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	98.08
PLN02271	586	serine hydroxymethyltransferase	98.07
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.06
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.0
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.99
PRK05367	954	glycine dehydrogenase; Provisional	97.91
PLN02414	993	glycine dehydrogenase (decarboxylating)	97.91
PLN02724	805	Molybdenum cofactor sulfurase	97.9
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	97.88
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	97.8
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	97.8
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	97.78
PRK06434	384	cystathionine gamma-lyase; Validated	97.76
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	97.74
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	97.7
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	97.6
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	97.55
PRK15029	755	arginine decarboxylase; Provisional	97.54
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	97.39
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	97.31
KOG2040|consensus	1001		97.26
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	97.14
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	97.14
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	97.13
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	96.83
PRK15399	713	lysine decarboxylase LdcC; Provisional	96.76
PRK13578	720	ornithine decarboxylase; Provisional	96.75
KOG0629|consensus	510		96.75
PRK15400	714	lysine decarboxylase CadA; Provisional	96.54
PLN02452	365	phosphoserine transaminase	96.13
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	95.69
PRK12462	364	phosphoserine aminotransferase; Provisional	95.67
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	95.55
PRK12566	954	glycine dehydrogenase; Provisional	95.54
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	94.93
KOG0628|consensus	511		94.8
KOG1412|consensus	410		93.82
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	92.21
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	91.75
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	91.74
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	91.62
KOG2467|consensus	477		90.63
KOG1383|consensus	491		89.68
KOG1411|consensus	427		80.37

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-66  Score=475.10  Aligned_cols=267  Identities=28%  Similarity=0.463  Sum_probs=240.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc---CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS---SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      |||||+|||+||.||||+.||+|.++|||+|.+++++|++.....   ..+++.++++|+|++||+++..+.++....+.
T Consensus       127 aeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~  206 (447)
T COG0160         127 AEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDAL  206 (447)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHH
Confidence            699999999999999999999999999999999999998765543   44566688899999999998765556666778


Q ss_pred             HHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         78 QAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        78 ~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      +.+++.+..   .+.++||||+|||||+||.++||++||++|+++|+|||++||+|||||||||||+ ||+++++|+.||
T Consensus       207 ~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~-~fa~E~~gv~PD  285 (447)
T COG0160         207 EYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK-MFAFEHFGVEPD  285 (447)
T ss_pred             HHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-chhhhhcCCCCC
Confidence            888886652   2345999999999999999999999999999999999999999999999999997 999999999999


Q ss_pred             EEEecccccCCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        155 IITVGKPMGNGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       155 iv~~sK~l~~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      |+|+||++++|+|+|++++++++++....                            ++++.++|++++++|.++     
T Consensus       286 ivt~aK~ig~G~Pl~avv~r~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~  365 (447)
T COG0160         286 IVTLAKSLGGGLPLSAVVGRAEIMDWPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHP  365 (447)
T ss_pred             EEEecccccCCCceeEEeccHHhcccCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999984332                            558999999999999988     


Q ss_pred             -------cCceeEEEEe-------cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILL-------SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 -------~G~~~~i~~~-------~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                             .|+|++++++       |+.+.+.+++++|+++|+++..++.++|+|||.|||++|++++|+++++|++++++
T Consensus       366 ~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~  445 (447)
T COG0160         366 LIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKE  445 (447)
T ss_pred             ceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence                   8899999998       34567899999999999999999988999999999999999999999999999986


Q ss_pred             H
Q psy11784        268 L  268 (284)
Q Consensus       268 ~  268 (284)
                      +
T Consensus       446 ~  446 (447)
T COG0160         446 A  446 (447)
T ss_pred             h
Confidence            4

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-63  Score=443.49  Aligned_cols=246  Identities=30%  Similarity=0.554  Sum_probs=218.0

Q ss_pred             CcHHHHHHHHHHHccC---CccEEEEcCCCcccchhhhcCCCCc-cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHH
Q psy11784          1 SEANDLALQLARAYTG---RQNIVVVDAAYHGTVNLLLDISPRA-FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~~~~---r~~il~~~~~yHG~t~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
                      +||||+|+|+||+|++   |.+||+|.+||||+|++++|+++.. ++.+ .++.+.+.++|        |++        
T Consensus       110 aEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vp--------fnD--------  173 (404)
T COG4992         110 AEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVP--------FND--------  173 (404)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecC--------CCC--------
Confidence            6999999999999997   8999999999999999999998754 4442 22333333444        444        


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         76 YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        76 ~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                       +++++++++   +++||||+|||||+||+++++++||+++|+||++||+|||+||||||+||||+ +|+++|+|+.|||
T Consensus       174 -i~al~~ai~---~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk-~fA~e~~gV~PDI  248 (404)
T COG4992         174 -IEALEAAID---EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK-LFAYEHYGVEPDI  248 (404)
T ss_pred             -HHHHHHHhc---cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch-HHHHHHhCCCCCE
Confidence             789999997   48999999999999999999999999999999999999999999999999998 9999999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +|++|+||||+|+|++++++++++.+..                             ++++++++++|+++|+++     
T Consensus       249 ~tlaK~LgGG~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~  328 (404)
T COG4992         249 LTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYP  328 (404)
T ss_pred             EEeeccccCCccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999777776654                             669999999999999996     


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                             .|+|+++++.++ ..+..+++.|+++||++.+.+  .+++||.|||++|++|||+++++|+++++.+..
T Consensus       329 ~v~~vRG~GLmiGiel~~~-~~a~~~~~~~~~~gvL~~~a~--~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~  401 (404)
T COG4992         329 LVKEVRGRGLMIGIELKEP-YRARDIVRALREEGVLVLPAG--PNVIRFLPPLVITEEEIDEALDALERALAAASA  401 (404)
T ss_pred             ceeeeecceeEEEEEecCc-ccHHHHHHHHHHCCeEEecCC--CCeEEecCCccCCHHHHHHHHHHHHHHHHHhhh
Confidence                   899999999632 257899999999999999754  679999999999999999999999999987643

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=2.3e-57  Score=426.59  Aligned_cols=266  Identities=23%  Similarity=0.369  Sum_probs=226.0

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccc-cc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFM-LS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||||+|||+||.||||++||+|++||||+|++++++++.... .. .+....+.++|+|+.++++++...++....+++
T Consensus       137 SEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  216 (464)
T PRK06938        137 TDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLH  216 (464)
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHH
Confidence            7999999999999999999999999999999999988754221 11 223334566788888777765443445556788


Q ss_pred             HHHHHHHhcC---CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         79 AARNIMEAHR---DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        79 ~l~~~i~~~~---~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .++++++...   +++||||+|||||++|+++||++||++|+++|++||++||+|||||||||||+ +|+++++|+.|||
T Consensus       217 ~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~e~~gv~PDi  295 (464)
T PRK06938        217 YLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEHAGIIPDV  295 (464)
T ss_pred             HHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcH-HHHHHhcCCCCCE
Confidence            8999997432   36999999999999999999999999999999999999999999999999998 8999999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +|+||+++||+|+|++++++++ +.+..                             +++++++|++|+++|+++     
T Consensus       296 v~~gKglggG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~  374 (464)
T PRK06938        296 VVLSKAIGGSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYP  374 (464)
T ss_pred             EEeeccccCCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999885 65422                             458999999999999887     


Q ss_pred             -------cCceeEEEEecc-------------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSI-------------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       202 -------~G~~~~i~~~~~-------------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                             .|+|++++++.+             ...+..+++.|+++|+++.+.+..+++|||.||+++|++|+|+++++|
T Consensus       375 ~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l  454 (464)
T PRK06938        375 QLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIF  454 (464)
T ss_pred             CeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHH
Confidence                   699999999621             123567889999999999876555789999999999999999999999


Q ss_pred             HHHHHHH
Q psy11784        262 NRIFTSL  268 (284)
Q Consensus       262 ~~~l~~~  268 (284)
                      ++++.++
T Consensus       455 ~~~l~~~  461 (464)
T PRK06938        455 AEAVAAA  461 (464)
T ss_pred             HHHHHHH
Confidence            9999875

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=2e-57  Score=414.40  Aligned_cols=265  Identities=28%  Similarity=0.442  Sum_probs=229.8

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCcccc---cCCCCCceEEccCCCCcCCCCCCC-ch
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFML---SSEKKPWVHVIPFPDTYRGEFSAD-DP   70 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~   70 (284)
                      |||||.|+|||++|+      +|++||++++||||.|.+++|+++.....   .+.+.....++|.|+.|+.....+ ++
T Consensus       115 SeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~  194 (449)
T COG0161         115 SEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDE  194 (449)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChH
Confidence            899999999999995      47789999999999999999998743222   134445556789998887666433 33


Q ss_pred             HHHHHHHHHHHHHHHhcC-CCeeEEEEcceecC-CCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc
Q psy11784         71 QAAQKYAQAARNIMEAHR-DNIATLICEPVFVV-HGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT  148 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~  148 (284)
                      +. .+++++||++|.+++ ++|||||+|||++. ||+++||++||++++++|++||+|||+|||.|||||||+ +|++++
T Consensus       195 ~~-~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~-~FA~e~  272 (449)
T COG0161         195 EF-AEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK-MFACEH  272 (449)
T ss_pred             HH-HHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch-hhhhhh
Confidence            34 577999999999777 66999999999776 999999999999999999999999999999999999998 899999


Q ss_pred             cCCCCcEEEecccccCC-cceeEEEecHHHHHhchh----------------------------------hhhHHHHHHH
Q psy11784        149 QGAVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC----------------------------------LDDNRPSGKY  193 (284)
Q Consensus       149 ~g~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~----------------------------------l~~~~~~~~~  193 (284)
                      +|++|||+|+||+|+|| +|+|++++++++.+.+..                                  ++++++++.+
T Consensus       273 ~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~  352 (449)
T COG0161         273 AGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAY  352 (449)
T ss_pred             cCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999999 599999999999998765                                  4589999999


Q ss_pred             HHHHHHh-c-----------cCceeEEEEeccc--------HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        194 LVRPLGI-N-----------LHIFWCLILLSIT--------YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       194 l~~~L~~-~-----------~G~~~~i~~~~~~--------~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      |.++|++ +           .|++.+++++.+.        .....+.+.++++|++++|.   ++.+.+.||+++|++|
T Consensus       353 l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~---g~~i~~~PPliit~~e  429 (449)
T COG0161         353 LQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL---GDVIYLMPPLIITREE  429 (449)
T ss_pred             HHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec---CCEEEEcCCccCCHHH
Confidence            9999998 3           8999999998332        23667888999999999974   6899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy11784        254 VLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       254 id~~~~~l~~~l~~~~~  270 (284)
                      ||++++++.+++++...
T Consensus       430 id~l~~~l~~al~~~~~  446 (449)
T COG0161         430 IDELVDALREALDETLA  446 (449)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999987643

>PRK05965 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-56  Score=422.05  Aligned_cols=266  Identities=27%  Similarity=0.486  Sum_probs=225.9

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|||+||+|      ++|++||+|++||||+|.+++++++... +.. .....+..++|.|+.++++++++.++.
T Consensus       117 SEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (459)
T PRK05965        117 SDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAI  196 (459)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHH
Confidence            79999999999999      4589999999999999999888875432 211 112233456777877777665554555


Q ss_pred             HHHHHHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ...+++.++++++... +++||||+|||||++|+++||++||++|+++|++||++||+|||+|||||||+ +|+++++|+
T Consensus       197 ~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~gv  275 (459)
T PRK05965        197 IAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP-LFACEAEGV  275 (459)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch-hhhHhhcCC
Confidence            6677889999998554 56999999999999999999999999999999999999999999999999998 899999999


Q ss_pred             CCcEEEecccccCCc-ceeEEEecHHHHHhch----------h--------------------------hhhHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNGM-PIGAVITSRKIAESLN----------C--------------------------LDDNRPSGKYL  194 (284)
Q Consensus       152 ~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~----------~--------------------------l~~~~~~~~~l  194 (284)
                      .|||+|+||+|+||+ |+|++++++++++.+.          .                          ++++++++++|
T Consensus       276 ~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l  355 (459)
T PRK05965        276 VPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRF  355 (459)
T ss_pred             CCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            999999999999995 9999999999987552          1                          45899999999


Q ss_pred             HHHHHhc-----------cCceeEEEEeccc----------HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        195 VRPLGIN-----------LHIFWCLILLSIT----------YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       195 ~~~L~~~-----------~G~~~~i~~~~~~----------~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      +++|+++           .|+|+++++..+.          .....+.+.++++||++.+.+  .++||+.||+++|++|
T Consensus       356 ~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g--~~~i~~~PpL~it~~e  433 (459)
T PRK05965        356 AAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFG--DGVLGFAPALCCTEGE  433 (459)
T ss_pred             HHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecC--CcEEEEECCCcCCHHH
Confidence            9999886           8999999996211          235678899999999998643  5789999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11784        254 VLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       254 id~~~~~l~~~l~~~~  269 (284)
                      ||+++++|+++++++.
T Consensus       434 i~~~~~~l~~~l~~~~  449 (459)
T PRK05965        434 FDLIFERTRKTLDDVL  449 (459)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999874

>KOG1404|consensus

Probab=100.00  E-value=3.1e-57  Score=397.76  Aligned_cols=260  Identities=35%  Similarity=0.597  Sum_probs=229.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCC-chHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSAD-DPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   77 (284)
                      |||||.|+||||.|||+..||++.+||||+|..++++++......  ++...++++.+.|+.+|+.+..+ .++..+++.
T Consensus       119 sEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a  198 (442)
T KOG1404|consen  119 SEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYA  198 (442)
T ss_pred             chHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHH
Confidence            799999999999999999999999999999999998886543332  34444566788899999998765 445678889


Q ss_pred             HHHHHHHHhcCC-CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         78 QAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        78 ~~l~~~i~~~~~-~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +++++.+....+ .+||+|.|||||.||.+.+|++||++++++|+++|.++|+|||||||||||. +|+++..|+.|||+
T Consensus       199 ~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~-~wgfe~h~v~PDIv  277 (442)
T KOG1404|consen  199 KELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGH-MWGFESHGVVPDIV  277 (442)
T ss_pred             HHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccc-cccccccCCCccHH
Confidence            999999874444 4999999999999999999999999999999999999999999999999995 99999999999999


Q ss_pred             EecccccCCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        157 TVGKPMGNGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       157 ~~sK~l~~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      |++|++|+|+|+||+++++||++.+.+                              .++..+.|.+|+++|.++     
T Consensus       278 TmAKgiGnG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~  357 (442)
T KOG1404|consen  278 TMAKGIGNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHP  357 (442)
T ss_pred             HHHhhccCCCcceeeecCHHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999998766                              347888999999999988     


Q ss_pred             -------cCceeEEEEec--------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLS--------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       202 -------~G~~~~i~~~~--------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                             +|||+++|++.        .......+.+.++++|+++..++..++++|+.||+++|++|+|.+++.+
T Consensus       358 iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  358 IIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             ceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence                   89999999982        2345677899999999999888888999999999999999998888766

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=2e-56  Score=420.02  Aligned_cols=268  Identities=22%  Similarity=0.391  Sum_probs=222.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc-cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA-FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||||+|||+||+||||++||+|++||||+|.+++++++.. ++.. .+....+.++|+|+.++++++...++..+.+.+
T Consensus       131 sEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (459)
T PRK06931        131 ADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTY  210 (459)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHH
Confidence            79999999999999999999999999999999999877542 2211 223344566899998888876432233333344


Q ss_pred             HHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         79 AARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        79 ~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++.++.   ..+++||||+|||||++|++++|++||++|+++|++||++||+|||||||||||+ +|+++++|++|||
T Consensus       211 ~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~-~~a~~~~gv~PDi  289 (459)
T PRK06931        211 YFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGK-MFAFEHAGIEPDI  289 (459)
T ss_pred             HHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCch-HHHhhhcCCCCCE
Confidence            45555542   3345999999999999999999999999999999999999999999999999998 8999999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +|+||+++||+|+|++++++++ +.+..                             ++++++++++|+++|+++     
T Consensus       290 vt~gK~l~gG~Pi~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~  368 (459)
T PRK06931        290 IVMSKAVGGGLPLAVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYP  368 (459)
T ss_pred             EEecccccCCcceeeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999998774 65532                             458999999999999887     


Q ss_pred             -------cCceeEEEEecc-------------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSI-------------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       202 -------~G~~~~i~~~~~-------------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                             .|+|+++++..+             ......+.+.|+++|+++.+.+..++++||.||+++|++|||+++++|
T Consensus       369 ~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l  448 (459)
T PRK06931        369 CIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRF  448 (459)
T ss_pred             CeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHH
Confidence                   899999999621             123567888999999999876556789999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy11784        262 NRIFTSLQM  270 (284)
Q Consensus       262 ~~~l~~~~~  270 (284)
                      +++++++.+
T Consensus       449 ~~~l~~~~~  457 (459)
T PRK06931        449 EQALLAAVK  457 (459)
T ss_pred             HHHHHHHHh
Confidence            999987643

>PRK07678 aminotransferase; Validated

Probab=100.00  E-value=3.9e-56  Score=417.65  Aligned_cols=267  Identities=26%  Similarity=0.454  Sum_probs=224.9

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|||+||.||      +|++||+|+++|||+|++++++++......  .+....+.++|.|+.++.++....+..
T Consensus       115 seA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (451)
T PRK07678        115 SEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIY  194 (451)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHH
Confidence            799999999999996      688999999999999999998876432211  223344556788888877665433444


Q ss_pred             HHHHHHHHHHHHH-hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIME-AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~-~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ..++++.++++++ ..++++||||+|||||++|+++||++||++|+++|++||++||+|||||||||+|+ +|+++++|+
T Consensus       195 ~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~gv  273 (451)
T PRK07678        195 DLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK-AFGFMNYGV  273 (451)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch-hHHHHhcCC
Confidence            5566788888887 34567999999999999999999999999999999999999999999999999998 889999999


Q ss_pred             CCcEEEecccccCC-cceeEEEecHHHHHhch---------h--------------------------hhhHHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNG-MPIGAVITSRKIAESLN---------C--------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       152 ~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~---------~--------------------------l~~~~~~~~~l~  195 (284)
                      .|||+|+||+|+|| +|+|++++++++++.+.         .                          ++++++++++|+
T Consensus       274 ~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~  353 (451)
T PRK07678        274 KPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLL  353 (451)
T ss_pred             CCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999 69999999999988653         1                          458899999999


Q ss_pred             HHHHhc------------cCceeEEEEec--------ccHHHHHHHHHHHHCCcEEeecCC----CCCEEEEEcCCCCCH
Q psy11784        196 RPLGIN------------LHIFWCLILLS--------ITYYLYRYTRRMKEAKIIVANEGE----YGNVLLFLPAMCLTT  251 (284)
Q Consensus       196 ~~L~~~------------~G~~~~i~~~~--------~~~~~~~~~~~l~~~Gv~~~~~~~----~~~~lr~~p~l~~t~  251 (284)
                      +.|+++            .|+|+++++..        +...+..+++.|+++||++.+.++    .+++|||+||+++|+
T Consensus       354 ~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~  433 (451)
T PRK07678        354 EQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISS  433 (451)
T ss_pred             HHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCH
Confidence            999754            79999999962        123467889999999999976432    248999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy11784        252 ENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       252 ~~id~~~~~l~~~l~~~  268 (284)
                      +|||+++++|+++++++
T Consensus       434 ~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        434 EEIAFIVGTLKTALERI  450 (451)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999999765

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=9.8e-56  Score=415.84  Aligned_cols=264  Identities=21%  Similarity=0.366  Sum_probs=223.1

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCc-cccc-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRA-FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|||+||+|      ++|++||+|++||||+|.+++++++.. ++.. .+....+.++|+|+.++..+....++.
T Consensus       139 SEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~  218 (472)
T PRK08742        139 SAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDY  218 (472)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHH
Confidence            79999999999999      568999999999999999999987543 2211 222334556788888877665544455


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcc-eecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEP-VFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ...+++.++++++...+++||||+|| +||++|++++|++||++|+++|++||++||+|||||||||||+ +|+++++|+
T Consensus       219 ~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~-~~a~e~~gv  297 (472)
T PRK08742        219 ALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT-LFACEQAGV  297 (472)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chHHHhcCC
Confidence            55678888888876566799999999 6999999999999999999999999999999999999999998 899999999


Q ss_pred             CCcEEEecccccCCc-ceeEEEecHHHHHhch---------h--------------------------hhhHHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNGM-PIGAVITSRKIAESLN---------C--------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       152 ~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~---------~--------------------------l~~~~~~~~~l~  195 (284)
                      .|||+|+||+|+||+ |+|++++++++++.+.         .                          ++++++++++|+
T Consensus       298 ~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~  377 (472)
T PRK08742        298 MPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMT  377 (472)
T ss_pred             CCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            999999999999995 9999999999988652         0                          458888999998


Q ss_pred             HHHHhc-----------cCceeEEEEeccc----------HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHH
Q psy11784        196 RPLGIN-----------LHIFWCLILLSIT----------YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENV  254 (284)
Q Consensus       196 ~~L~~~-----------~G~~~~i~~~~~~----------~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~i  254 (284)
                      +.++.+           .|+|++++++.+.          .....+.+.++++||++.+.   +++|||.||+++|++||
T Consensus       378 ~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---g~vi~~~PpL~it~~ei  454 (472)
T PRK08742        378 QLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL---GDVLYWMPPYCVDEAQL  454 (472)
T ss_pred             HHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec---CCEEEEECCCCCCHHHH
Confidence            777664           8999999996211          12467888999999999864   48999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy11784        255 LFIVSTLNRIFTSL  268 (284)
Q Consensus       255 d~~~~~l~~~l~~~  268 (284)
                      |+++++|+++++++
T Consensus       455 ~~~~~~l~~~l~~~  468 (472)
T PRK08742        455 ALLADTTRHAIDEA  468 (472)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999875

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-55  Score=413.85  Aligned_cols=268  Identities=24%  Similarity=0.368  Sum_probs=225.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCC----CchHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSA----DDPQAA   73 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~   73 (284)
                      |||||+|||+||+||||++||+|++||||+|.+++++++..  .+.. ......+.++|+|+.++.++..    +.++..
T Consensus       123 sEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  202 (457)
T PRK05639        123 SDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELI  202 (457)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHH
Confidence            79999999999999999999999999999999998876531  1111 2233445567888877765432    223445


Q ss_pred             HHHHHHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         74 QKYAQAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        74 ~~~~~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      +.+++.+++.+..   .++++||||+|||||++|+++||++||++|+++|++||++||+|||||||||+|+ +|+++++|
T Consensus       203 ~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g  281 (457)
T PRK05639        203 NRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGK-WFASEWFE  281 (457)
T ss_pred             HHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCch-HHHHHhcC
Confidence            5667788887743   2456999999999999999999999999999999999999999999999999998 88999999


Q ss_pred             CCCcEEEecccccCCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        151 AVPDIITVGKPMGNGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      +.|||+|+||+++||+|+|++++++++++....                            ++++++++++|+++|+++ 
T Consensus       282 v~PDiv~~gK~l~gG~pi~av~~~~~i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~  361 (457)
T PRK05639        282 VKPDLIIFGKGVASGMGLSGVIGRKELMDLTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMK  361 (457)
T ss_pred             CCCCEEEechhhcCCCcceeEEehHHHHhhcCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999984321                            458889999999999885 


Q ss_pred             -----------cCceeEEEEec-----ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        202 -----------LHIFWCLILLS-----ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       202 -----------~G~~~~i~~~~-----~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                                 .|+|+++++..     +...+..+++.|+++|+++.+.+..+++|||.||+++|++|+|+++++|++++
T Consensus       362 ~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l  441 (457)
T PRK05639        362 ESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAI  441 (457)
T ss_pred             HhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence                       78999999862     22356789999999999998765556899999999999999999999999999


Q ss_pred             HHHh
Q psy11784        266 TSLQ  269 (284)
Q Consensus       266 ~~~~  269 (284)
                      +++.
T Consensus       442 ~~~~  445 (457)
T PRK05639        442 KDAL  445 (457)
T ss_pred             HHHH
Confidence            8874

>PRK07483 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-55  Score=412.34  Aligned_cols=268  Identities=28%  Similarity=0.427  Sum_probs=221.2

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCC-CCchH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFS-ADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~~~~   71 (284)
                      |||||+|||+||+|      ++|++||+|+++|||+|.+++++++..... . .+......++|.|+.|+.... .+.++
T Consensus       100 sEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  179 (443)
T PRK07483        100 SEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEA  179 (443)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHH
Confidence            79999999999999      789999999999999999999987643221 1 122223345666666665432 22234


Q ss_pred             HHHHHHHHHHHHHHh-cCCCeeEEEEcceec-CCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc
Q psy11784         72 AAQKYAQAARNIMEA-HRDNIATLICEPVFV-VHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ  149 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~-~~~~vaavi~Epv~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~  149 (284)
                      ....+++++++++.. ..+++||||+||||| .+|+++||++||++|+++|++||++||+|||||||||||+ +|+++++
T Consensus       180 ~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~  258 (443)
T PRK07483        180 YGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT-LFACEED  258 (443)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcH-HHHHhhc
Confidence            455667888887763 445699999999999 5899999999999999999999999999999999999998 8999999


Q ss_pred             CCCCcEEEecccccCCc-ceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHH
Q psy11784        150 GAVPDIITVGKPMGNGM-PIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       150 g~~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~  195 (284)
                      |++|||+|+||+++||+ |+|++++++++++.+..                                 ++++++++++|+
T Consensus       259 gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~  338 (443)
T PRK07483        259 GVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLR  338 (443)
T ss_pred             CCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999996 99999999999876521                                 458999999999


Q ss_pred             HHHHhc------------cCceeEEEEecc----------cHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCC
Q psy11784        196 RPLGIN------------LHIFWCLILLSI----------TYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMC  248 (284)
Q Consensus       196 ~~L~~~------------~G~~~~i~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~  248 (284)
                      ++|+++            .|+|+++++..+          ......+++.++++||++.+.+.     .+++|||.||++
T Consensus       339 ~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~  418 (443)
T PRK07483        339 ARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFI  418 (443)
T ss_pred             HHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCC
Confidence            999874            899999999621          12356789999999999986532     258999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHh
Q psy11784        249 LTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       249 ~t~~~id~~~~~l~~~l~~~~  269 (284)
                      +|++|||+++++|+++++++.
T Consensus       419 it~~eid~~~~~l~~~l~~~~  439 (443)
T PRK07483        419 ITAAQIDEIVERLGDAIDAAL  439 (443)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998764

>PRK07482 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-55  Score=414.18  Aligned_cols=266  Identities=23%  Similarity=0.336  Sum_probs=221.0

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCccc-cc-CCCCCceEEccCCCCcCCCC-CCCchH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFM-LS-SEKKPWVHVIPFPDTYRGEF-SADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~   71 (284)
                      |||||+|||+||+|+      +|++||+|++||||+|.+++++++.... .. ......+.++|.|+.+++++ +...++
T Consensus       121 SEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  200 (461)
T PRK07482        121 SDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQ  200 (461)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHH
Confidence            799999999999884      5899999999999999999988764321 11 22233345577777766543 222234


Q ss_pred             HHHHHHHHHHHHHHhc-CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~-~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....+++.+++++++. ++++||||+|||||++|++++|++||++|+++|++||++||+|||+|||||||+ +|+++++|
T Consensus       201 ~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~~~~g  279 (461)
T PRK07482        201 FSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS-MFGSDHYG  279 (461)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc-hhhHHhcC
Confidence            4556788999988643 456999999999999999999999999999999999999999999999999998 89999999


Q ss_pred             CCCcEEEecccccCCc-ceeEEEecHHHHHhch----------h--------------------------hhhHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNGM-PIGAVITSRKIAESLN----------C--------------------------LDDNRPSGKY  193 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~----------~--------------------------l~~~~~~~~~  193 (284)
                      ++||++|+||+++||+ |+|++++++++++.+.          .                          ++++++++++
T Consensus       280 v~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~  359 (461)
T PRK07482        280 IEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAY  359 (461)
T ss_pred             CCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999996 9999999999987653          1                          4589999999


Q ss_pred             HHHHHHhc------------cCceeEEEEeccc----------HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCH
Q psy11784        194 LVRPLGIN------------LHIFWCLILLSIT----------YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTT  251 (284)
Q Consensus       194 l~~~L~~~------------~G~~~~i~~~~~~----------~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~  251 (284)
                      |+++|+++            .|+|++++++.+.          ..+..++..|+++||++.+. +.++++||.||+++|+
T Consensus       360 l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-~~~~~i~~~Ppl~it~  438 (461)
T PRK07482        360 FRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAM-PHGDILGFAPPLVLTR  438 (461)
T ss_pred             HHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecC-CCCCEEEEeCCCCCCH
Confidence            99999865            8999999996211          13567899999999998653 2368999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy11784        252 ENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       252 ~~id~~~~~l~~~l~~~  268 (284)
                      +|||+++++|+++++++
T Consensus       439 ~ei~~~~~~l~~~l~~~  455 (461)
T PRK07482        439 AEADEIVAIAKDAVDEV  455 (461)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999876

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.9e-55  Score=412.73  Aligned_cols=264  Identities=20%  Similarity=0.350  Sum_probs=223.7

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|||+||+|      ++|++||+|++||||+|.+++++++..... . ........++|+|+.++.++....++.
T Consensus       124 seAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  203 (453)
T PRK06943        124 ASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADV  203 (453)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHH
Confidence            79999999999876      478999999999999999999988643221 1 222333455788876665554433445


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcc-eecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEP-VFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ...+++.++++++.+++++||||+|| +||++|++++|++||++|+++|++||++||+|||||||||||+ +|+++++|+
T Consensus       204 ~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~-~fa~~~~gv  282 (453)
T PRK06943        204 AARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT-FFACEQAGV  282 (453)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcc-hhHHHhCCC
Confidence            55678889999986667799999999 5999999999999999999999999999999999999999998 899999999


Q ss_pred             CCcEEEecccccCC-cceeEEEecHHHHHhch---------h--------------------------hhhHHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNG-MPIGAVITSRKIAESLN---------C--------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       152 ~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~---------~--------------------------l~~~~~~~~~l~  195 (284)
                      .|||+|+||+|+|| +|+|++++++++++.+.         .                          ++++++++++|+
T Consensus       283 ~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~  362 (453)
T PRK06943        283 WPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLR  362 (453)
T ss_pred             CCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999 59999999999998653         1                          458899999999


Q ss_pred             HHHHhc-----------cCceeEEEEecc----cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHH
Q psy11784        196 RPLGIN-----------LHIFWCLILLSI----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVST  260 (284)
Q Consensus       196 ~~L~~~-----------~G~~~~i~~~~~----~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~  260 (284)
                      ++|+++           .|+|+++++..+    ......+.+.++++||++.+.   ++++||.||+++|++|||+++++
T Consensus       363 ~~L~~l~~~~~v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~---g~~l~~~Ppl~it~~eid~~~~~  439 (453)
T PRK06943        363 AALAPLAAHPQVRHLRQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPI---GTTVYLMPPYVLDDDEIAWLAER  439 (453)
T ss_pred             HHHHHHhcCCCEEeEeccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEec---CCEEEEeCCCcCCHHHHHHHHHH
Confidence            999886           899999999622    124667889999999999864   36899999999999999999999


Q ss_pred             HHHHHHHH
Q psy11784        261 LNRIFTSL  268 (284)
Q Consensus       261 l~~~l~~~  268 (284)
                      |+++++++
T Consensus       440 l~~al~~~  447 (453)
T PRK06943        440 TRATLDAT  447 (453)
T ss_pred             HHHHHHHH
Confidence            99999886

>PRK07481 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-55  Score=413.11  Aligned_cols=264  Identities=26%  Similarity=0.420  Sum_probs=222.9

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCC-CchH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSA-DDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~   71 (284)
                      |||||+|||+||+|+      +|++||+|++||||+|.+++++++......  .+....+.++|.|+.++++++. +.+.
T Consensus       114 sEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~  193 (449)
T PRK07481        114 SDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEE  193 (449)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHH
Confidence            699999999999995      789999999999999999998875432211  2233345567888888888773 3334


Q ss_pred             HHHHHHHHHHHHHH-hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIME-AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~-~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....+.+.+|+++. ..++++||||+|||||++|.++||++||++|+++|++||++||+|||+|||||+|+ +|+++++|
T Consensus       194 ~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g  272 (449)
T PRK07481        194 LARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS-WFGSRGWG  272 (449)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch-hhHhhhcC
Confidence            44556778888887 34567999999999999999999999999999999999999999999999999998 89999999


Q ss_pred             CCCcEEEecccccCCc-ceeEEEecHHHHHhch----------h--------------------------hhhHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNGM-PIGAVITSRKIAESLN----------C--------------------------LDDNRPSGKY  193 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~----------~--------------------------l~~~~~~~~~  193 (284)
                      +.|||+|+||+++||+ |+|++++++++++.+.          .                          ++++++++++
T Consensus       273 v~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~  352 (449)
T PRK07481        273 VKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAY  352 (449)
T ss_pred             CCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            9999999999999995 9999999999988753          1                          4588899999


Q ss_pred             HHHHHHhc------------cCceeEEEEecc----------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCH
Q psy11784        194 LVRPLGIN------------LHIFWCLILLSI----------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTT  251 (284)
Q Consensus       194 l~~~L~~~------------~G~~~~i~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~  251 (284)
                      |++.|+++            .|+|+++++..+          ......+.+.|+++||++.+.   ++.+||.||+++|+
T Consensus       353 l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---g~~i~l~Ppl~it~  429 (449)
T PRK07481        353 LLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS---GTKIILSPPLVIQR  429 (449)
T ss_pred             HHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec---CCEEEEECCCCCCH
Confidence            99999886            899999999621          124567888999999999864   35799999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy11784        252 ENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       252 ~~id~~~~~l~~~l~~~  268 (284)
                      +|||+++++|+++++++
T Consensus       430 ~eid~~~~~l~~~l~~~  446 (449)
T PRK07481        430 EDVDRIVDALDAGLSAV  446 (449)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999999875

>PRK06062 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-55  Score=412.12  Aligned_cols=265  Identities=27%  Similarity=0.423  Sum_probs=222.6

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc-CCCCCceEEccCCCCcCCCCCC-CchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS-SEKKPWVHVIPFPDTYRGEFSA-DDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   78 (284)
                      |||||+|||+||+||||++||+|+++|||+|.+++++++...... ......+..+|.|+.++.++.. ++++....+++
T Consensus       122 sEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  201 (451)
T PRK06062        122 ADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALA  201 (451)
T ss_pred             HHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHH
Confidence            699999999999999999999999999999999998875432221 1222334456777777766531 22345566788


Q ss_pred             HHHHHHHhc-CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE
Q psy11784         79 AARNIMEAH-RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT  157 (284)
Q Consensus        79 ~l~~~i~~~-~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~  157 (284)
                      .++++++.. ++++||||+|||||++|+++||++||++|+++|++||++||+|||||||||+|+ +|+++++|+.|||+|
T Consensus       202 ~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~-~~a~~~~gv~PDi~t  280 (451)
T PRK06062        202 HLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK-WFAIEHFGVVPDLIT  280 (451)
T ss_pred             HHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcH-HHHHHhcCCCCCeee
Confidence            999999754 356999999999999999999999999999999999999999999999999998 889999999999999


Q ss_pred             ecccccCCc-ceeEEEecHHHHHhchh-------------------------------hhhHHHHH-HHHHHHHHhc---
Q psy11784        158 VGKPMGNGM-PIGAVITSRKIAESLNC-------------------------------LDDNRPSG-KYLVRPLGIN---  201 (284)
Q Consensus       158 ~sK~l~~G~-p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~-~~l~~~L~~~---  201 (284)
                      +||+++||+ |+|++++++++++.+..                               +++++++| ++|++.|+++   
T Consensus       281 ~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~  360 (451)
T PRK06062        281 FAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAER  360 (451)
T ss_pred             echhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999995 99999999999987632                               45788888 5888888876   


Q ss_pred             ---------cCceeEEEEeccc-------------HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHH
Q psy11784        202 ---------LHIFWCLILLSIT-------------YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVS  259 (284)
Q Consensus       202 ---------~G~~~~i~~~~~~-------------~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~  259 (284)
                               .|+|+++++..+.             .....+++.|+++||++.+   .++++||.||+++|++|||++++
T Consensus       361 ~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~---~~~~lrl~ppl~~t~~eid~~~~  437 (451)
T PRK06062        361 HPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFV---NGNRIHVVPPCTVTEDEVREGLA  437 (451)
T ss_pred             CCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEee---cCCEEEEECCccCCHHHHHHHHH
Confidence                     8999999986211             1356789999999999875   25799999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy11784        260 TLNRIFTSLQ  269 (284)
Q Consensus       260 ~l~~~l~~~~  269 (284)
                      +|+++++++.
T Consensus       438 ~l~~~l~~~~  447 (451)
T PRK06062        438 ILDAALAVAD  447 (451)
T ss_pred             HHHHHHHHhh
Confidence            9999998864

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=4.6e-55  Score=411.25  Aligned_cols=265  Identities=21%  Similarity=0.348  Sum_probs=225.7

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|+|+||+|      |+|++||+|++||||+|.+++++++... +.. .+......++|+|++++..++...++.
T Consensus       117 sEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~  196 (466)
T PRK07030        117 SSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEH  196 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHH
Confidence            79999999999998      5789999999999999999998876432 111 222233456788888777665544455


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcc-eecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEP-VFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ...+++.++++++.+++++||||+|| |||++|++++|++||++|+++|++||++||+|||+|||||||+ +|+++++|+
T Consensus       197 ~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~-~~a~~~~gv  275 (466)
T PRK07030        197 SRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT-MFACEQAGI  275 (466)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc-chHHHhcCC
Confidence            56678889999986667799999999 7999999999999999999999999999999999999999998 899999999


Q ss_pred             CCcEEEecccccCCc-ceeEEEecHHHHHhch----------h--------------------------hhhHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNGM-PIGAVITSRKIAESLN----------C--------------------------LDDNRPSGKYL  194 (284)
Q Consensus       152 ~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~----------~--------------------------l~~~~~~~~~l  194 (284)
                      .|||+|+||+|+||+ |+|++++++++++.+.          .                          ++++++++++|
T Consensus       276 ~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l  355 (466)
T PRK07030        276 RPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRM  355 (466)
T ss_pred             CCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999999995 9999999999988652          1                          45899999999


Q ss_pred             HHHHHhc-----------cCceeEEEEeccc----------HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        195 VRPLGIN-----------LHIFWCLILLSIT----------YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       195 ~~~L~~~-----------~G~~~~i~~~~~~----------~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      ++.|+++           .|+|+++++..+.          .....+.+.|+++||++.+.   ++++||.||+++|++|
T Consensus       356 ~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g~~i~~~Ppl~it~~e  432 (466)
T PRK07030        356 AEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL---GSVVYFLPPYVITPEQ  432 (466)
T ss_pred             HHHHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec---CCEEEEECCccCCHHH
Confidence            9999886           8999999996211          12357889999999999863   4799999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11784        254 VLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       254 id~~~~~l~~~l~~~~  269 (284)
                      ||+++++|+++++++.
T Consensus       433 id~~~~~l~~al~~~~  448 (466)
T PRK07030        433 IDFLAEVASEGIDIAT  448 (466)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999983

>PRK06148 hypothetical protein; Provisional

Probab=100.00  E-value=3.9e-55  Score=443.20  Aligned_cols=268  Identities=37%  Similarity=0.635  Sum_probs=233.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||||+|||+||+||||++||+|++||||+|.+++++++..++..  .+.++.++..+.|+.++.+++.++.+....+.+
T Consensus       690 sEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  769 (1013)
T PRK06148        690 SEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAE  769 (1013)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHH
Confidence            799999999999999999999999999999999999887544432  233455666788888888887654555666777


Q ss_pred             HHHHHHH---hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         79 AARNIME---AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        79 ~l~~~i~---~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++.++   ..++++||||+|||||++|++++|++||++|+++|++||++||+|||||||||+|+++|+++++|+.|||
T Consensus       770 ~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDi  849 (1013)
T PRK06148        770 SVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDI  849 (1013)
T ss_pred             HHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcce
Confidence            7887775   2345699999999999999999999999999999999999999999999999999657899999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                      +|+||++|||+|+|++++++++++.+..                              +++++++|++|+++|+++    
T Consensus       850 vt~gK~lggG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~  929 (1013)
T PRK06148        850 VTMGKPIGNGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRF  929 (1013)
T ss_pred             eeecccccCCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999987632                              458999999999999886    


Q ss_pred             --------cCceeEEEEec-------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 --------LHIFWCLILLS-------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 --------~G~~~~i~~~~-------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                              .|+|+++++..       +...+..+++.|+++||++.+.++.++++||.||+++|++|||+++++|+++++
T Consensus       930 ~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~ 1009 (1013)
T PRK06148        930 DIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLA 1009 (1013)
T ss_pred             CCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence                    79999999962       123467789999999999998777779999999999999999999999999998


Q ss_pred             HH
Q psy11784        267 SL  268 (284)
Q Consensus       267 ~~  268 (284)
                      ++
T Consensus      1010 ~~ 1011 (1013)
T PRK06148       1010 AA 1011 (1013)
T ss_pred             HH
Confidence            75

>PRK06917 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-54  Score=405.88  Aligned_cols=273  Identities=23%  Similarity=0.356  Sum_probs=227.7

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcccc--cCCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFML--SSEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|||+||+|      |+|++|++|+++|||+|++++++++.....  ...+...+.++|.|+.++++++++.+..
T Consensus       101 sEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  180 (447)
T PRK06917        101 SEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTC  180 (447)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHH
Confidence            79999999999887      679999999999999999999877543211  1222233445677777776665544455


Q ss_pred             HHHHHHHHHHHHHhcC-CCeeEEEEcceecC-CCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         73 AQKYAQAARNIMEAHR-DNIATLICEPVFVV-HGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ...+++.++++++.+. +++||||+||+||+ ||+++||++||++|+++|++||++||+|||+|||||+|+ +|+++++|
T Consensus       181 ~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~-~~a~~~~g  259 (447)
T PRK06917        181 QLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGA-MFAMEHWG  259 (447)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccc-hhhHHhcC
Confidence            5567788999888654 46999999999995 779999999999999999999999999999999999998 89999999


Q ss_pred             CCCcEEEecccccCCc-ceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNGM-PIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~  196 (284)
                      +.||++|+||+++||+ |+|++++++++++.+..                                 ++++++++++|++
T Consensus       260 v~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~  339 (447)
T PRK06917        260 VEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIK  339 (447)
T ss_pred             CCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            9999999999999996 99999999999886531                                 4589999999999


Q ss_pred             HHHhc------------cCceeEEEEecc----------cHHHHHHHHHHHHCCcEEeecC-----CCCCEEEEEcCCCC
Q psy11784        197 PLGIN------------LHIFWCLILLSI----------TYYLYRYTRRMKEAKIIVANEG-----EYGNVLLFLPAMCL  249 (284)
Q Consensus       197 ~L~~~------------~G~~~~i~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~lr~~p~l~~  249 (284)
                      .|+++            .|+|++++++.+          ......+++.|+++||++.+.+     ..++++|+.||+++
T Consensus       340 ~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~i  419 (447)
T PRK06917        340 GLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTI  419 (447)
T ss_pred             HHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcC
Confidence            99886            899999999621          1346778999999999998752     23689999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHhhccch
Q psy11784        250 TTENVLFIVSTLNRIFTSLQMDSSP  274 (284)
Q Consensus       250 t~~~id~~~~~l~~~l~~~~~~~~~  274 (284)
                      |++|||+++++|+++++++.++.++
T Consensus       420 t~~eid~~~~~l~~~l~~~~~~~~~  444 (447)
T PRK06917        420 TYSELDELLSIFAKSVEEMMQKGGH  444 (447)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999998765544

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.5e-54  Score=407.60  Aligned_cols=265  Identities=22%  Similarity=0.412  Sum_probs=225.6

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|+|+||+|      |+|++||+|++||||+|.+++++++..... . .+......++|+|+.++++++.+.++.
T Consensus       126 seAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~  205 (460)
T PRK06916        126 ATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEI  205 (460)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHH
Confidence            79999999999985      679999999999999999999887643221 1 222333456788888877665444455


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcc-eecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEP-VFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ...+++.+++.++.+++++||||+|| |||++|++++|++||++|+++|++||++||+|||+|||||+|+ +|+++++|+
T Consensus       206 ~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~-~~a~~~~gv  284 (460)
T PRK06916        206 VKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK-MFACEHENV  284 (460)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCch-hhHHHhcCC
Confidence            66678889999986667899999999 6999999999999999999999999999999999999999998 899999999


Q ss_pred             CCcEEEecccccCC-cceeEEEecHHHHHhch----------h--------------------------hhhHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNG-MPIGAVITSRKIAESLN----------C--------------------------LDDNRPSGKYL  194 (284)
Q Consensus       152 ~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~----------~--------------------------l~~~~~~~~~l  194 (284)
                      .|||+|+||+|+|| +|+|++++++++++.+.          .                          ++++++++++|
T Consensus       285 ~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l  364 (460)
T PRK06916        285 TPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYV  364 (460)
T ss_pred             CCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            99999999999999 59999999999987542          0                          45899999999


Q ss_pred             HHHHHhc-----------cCceeEEEEeccc----------HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        195 VRPLGIN-----------LHIFWCLILLSIT----------YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       195 ~~~L~~~-----------~G~~~~i~~~~~~----------~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      ++.|+++           .|+|+++++..+.          .....+++.|+++||++.+.   ++++||.||+++|++|
T Consensus       365 ~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g~~l~~~Ppl~it~~~  441 (460)
T PRK06916        365 ATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL---GNTIVFMPPLASTIDE  441 (460)
T ss_pred             HHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec---CCEEEEeCCcccCHHH
Confidence            9999876           8999999996211          12467889999999999864   4799999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11784        254 VLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       254 id~~~~~l~~~l~~~~  269 (284)
                      ||+++++|+++++++.
T Consensus       442 id~~~~~l~~~l~~~~  457 (460)
T PRK06916        442 LDEMLRILYKAISDVT  457 (460)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999998764

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=100.00  E-value=3.1e-54  Score=404.24  Aligned_cols=267  Identities=21%  Similarity=0.372  Sum_probs=222.2

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc-cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA-FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||||+|||+||+||||++||+|+++|||+|.+++++++.. ++.. ......+.++|+|+.++.+++...+...+.+.+
T Consensus       112 sEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (442)
T TIGR00709       112 ADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIE  191 (442)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHH
Confidence            69999999999999999999999999999999999887632 1111 122334456788888888776443333334444


Q ss_pred             HHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         79 AARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        79 ~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++.++.   ..+++||||+||+||++|++++|++||++|+++|++||++||+|||||||||+|+ +|+++++|+.|||
T Consensus       192 ~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~gv~PDi  270 (442)
T TIGR00709       192 YFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAGIEPDF  270 (442)
T ss_pred             HHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHHcCCCCcE
Confidence            55665542   2356999999999999999999999999999999999999999999999999998 8999999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +|+||++++|+|+|+++++++ ++.+..                             ++++++++++|++.|+++     
T Consensus       271 v~~gK~l~~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~  349 (442)
T TIGR00709       271 VVMSKAVGGGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHP  349 (442)
T ss_pred             EEEcccccCCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999988 454421                             458899999999999876     


Q ss_pred             -------cCceeEEEEecc-------------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSI-------------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       202 -------~G~~~~i~~~~~-------------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                             .|+|+++++..+             ...+..+...|+++||++.+.+..+++|||.||+++|++|+|+++++|
T Consensus       350 ~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l  429 (442)
T TIGR00709       350 CIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRF  429 (442)
T ss_pred             CeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence                   899999999622             123567888999999999876656799999999999999999999999


Q ss_pred             HHHHHHHh
Q psy11784        262 NRIFTSLQ  269 (284)
Q Consensus       262 ~~~l~~~~  269 (284)
                      +++++++.
T Consensus       430 ~~~l~~~~  437 (442)
T TIGR00709       430 KQAVEEAL  437 (442)
T ss_pred             HHHHHHHH
Confidence            99998764

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2.5e-54  Score=405.19  Aligned_cols=264  Identities=29%  Similarity=0.462  Sum_probs=217.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCC--CchHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSA--DDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   75 (284)
                      |||||+|+|+||+||||++||+|.++|||+|.+++++++..  +... ..........|.|+.++.+...  +.++....
T Consensus       127 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (443)
T PRK06058        127 AEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAAR  206 (443)
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHH
Confidence            79999999999999999999999999999999999887532  1211 1223334445666555433111  11233334


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         76 YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        76 ~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +++.+++.+.  ++++||||+||+||++|+++||++||++|+++|++||++||+|||||||||+|+ +|+++++|+.||+
T Consensus       207 ~~~~l~~~~~--~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~-~fa~~~~gv~PDi  283 (443)
T PRK06058        207 AITVIEKQVG--ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA-WFACEHEGIVPDL  283 (443)
T ss_pred             HHHHHHHhhC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChh-hhHHHhcCCCCCE
Confidence            4555555442  456999999999999999999999999999999999999999999999999998 8899999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +|+||+++||+|+|++++++++++.+..                             ++++++++++|+++|+++     
T Consensus       284 v~~gK~l~~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~  363 (443)
T PRK06058        284 ITTAKGIAGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDD  363 (443)
T ss_pred             EEEcccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999987753                             458889999999999876     


Q ss_pred             -------cCceeEEEEecc------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSI------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 -------~G~~~~i~~~~~------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                             .|+|+++++.++      ......+.+.|+++||++.+.+.++++|||.||+++|++|||+++++|++++++
T Consensus       364 ~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        364 RIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALAD  442 (443)
T ss_pred             cEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence                   789999999632      234677889999999999987666789999999999999999999999999865

>PRK07480 putative aminotransferase; Validated

Probab=100.00  E-value=4.6e-54  Score=403.72  Aligned_cols=266  Identities=22%  Similarity=0.335  Sum_probs=220.3

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|||+||+|      ++|++||+|+++|||+|.+++++++..... . +.....+.++|+|++++++.+.+.++.
T Consensus       121 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  200 (456)
T PRK07480        121 SEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEF  200 (456)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHH
Confidence            79999999999999      568899999999999999988887543211 1 122233445777887776654333444


Q ss_pred             HHHHHHHHHHHHH-hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIME-AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~-~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ...+++.+++.+. ..++++||||+|||||++|++++|++||++|+++|++||++||+|||||||||+|+ +|+++++|+
T Consensus       201 ~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~gv  279 (456)
T PRK07480        201 GLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE-WFGSQHFGI  279 (456)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc-hhhhhhcCC
Confidence            4555778876665 34456999999999999999999999999999999999999999999999999998 899999999


Q ss_pred             CCcEEEecccccCCc-ceeEEEecHHHHHhch--h-------------------------------hhhH-HHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNGM-PIGAVITSRKIAESLN--C-------------------------------LDDN-RPSGKYLVR  196 (284)
Q Consensus       152 ~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~--~-------------------------------l~~~-~~~~~~l~~  196 (284)
                      .|||+|+||+++||+ |+|++++++++++.+.  .                               ++++ ++++++|++
T Consensus       280 ~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~  359 (456)
T PRK07480        280 KPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQK  359 (456)
T ss_pred             CCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            999999999999995 9999999999998772  1                               4578 589999999


Q ss_pred             HHHhc-----------cCceeEEEEeccc----------HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHH
Q psy11784        197 PLGIN-----------LHIFWCLILLSIT----------YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       197 ~L~~~-----------~G~~~~i~~~~~~----------~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id  255 (284)
                      +|+++           .|+|++++++.+.          .....+.+.|+++||++.+.   ++++||.||+++|++|||
T Consensus       360 ~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---~~~l~~~Ppl~it~~eid  436 (456)
T PRK07480        360 RLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV---GDRMIISPPLVITHAEID  436 (456)
T ss_pred             HHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec---CCEEEEECCCCCCHHHHH
Confidence            99876           8999999996221          12356778899999999853   479999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy11784        256 FIVSTLNRIFTSLQM  270 (284)
Q Consensus       256 ~~~~~l~~~l~~~~~  270 (284)
                      +++++|+++++++.+
T Consensus       437 ~~~~~l~~al~~~~~  451 (456)
T PRK07480        437 ELVEKARKALDATAA  451 (456)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988754

>PRK07036 hypothetical protein; Provisional

Probab=100.00  E-value=7.8e-54  Score=403.16  Aligned_cols=265  Identities=26%  Similarity=0.422  Sum_probs=222.0

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|||+||+|      |+|++||+|++||||+|.+++++++......  ......+.++|.|+.++.+.+...++.
T Consensus       122 seAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  201 (466)
T PRK07036        122 STAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAF  201 (466)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHH
Confidence            79999999999999      4689999999999999999988876432211  222334556788887776655433444


Q ss_pred             HHHHHHHHHHHHHh-cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccc-ccC
Q psy11784         73 AQKYAQAARNIMEA-HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQ-TQG  150 (284)
Q Consensus        73 ~~~~~~~l~~~i~~-~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~-~~g  150 (284)
                      ...+++.+++.+.. .++++||||+|||||++|+++||++||++|+++|++||++||+|||+|||||+|+ +|+++ ++|
T Consensus       202 ~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~~g  280 (466)
T PRK07036        202 CDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH-FFASEAVFG  280 (466)
T ss_pred             HHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch-hhhhhhhcC
Confidence            55567788888764 4566999999999999999999999999999999999999999999999999998 78888 789


Q ss_pred             CCCcEEEecccccCCc-ceeEEEecHHHHHhch----------h--------------------------hhhHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNGM-PIGAVITSRKIAESLN----------C--------------------------LDDNRPSGKY  193 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~----------~--------------------------l~~~~~~~~~  193 (284)
                      +.|||+|+||+++||+ |+|++++++++++.+.          .                          ++++++++++
T Consensus       281 v~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~  360 (466)
T PRK07036        281 IQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPY  360 (466)
T ss_pred             CCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999995 9999999999988642          0                          4589999999


Q ss_pred             HHHHHHhc-----------cCceeEEEEecc----------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHH
Q psy11784        194 LVRPLGIN-----------LHIFWCLILLSI----------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       194 l~~~L~~~-----------~G~~~~i~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~  252 (284)
                      |+++|+++           .|+|+++++..+          ......+.+.|+++||++.+.   ++.+|+.||+++|++
T Consensus       361 l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---~~~~~l~Ppl~it~~  437 (466)
T PRK07036        361 FEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL---EHLCVLSPPLIITRA  437 (466)
T ss_pred             HHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec---CCEEEEeCCCcCCHH
Confidence            99999875           899999999621          123567888999999999863   378999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy11784        253 NVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       253 ~id~~~~~l~~~l~~~~  269 (284)
                      |||+++++|+++++++.
T Consensus       438 ~id~~~~~l~~al~~~~  454 (466)
T PRK07036        438 QIDEIVAILRAAIEETA  454 (466)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998874

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=100.00  E-value=3e-54  Score=402.42  Aligned_cols=246  Identities=26%  Similarity=0.466  Sum_probs=207.3

Q ss_pred             CcHHHHHHHHHHHcc---CCccEEEEcCCCcccchhhhcCCCCc-cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHH
Q psy11784          1 SEANDLALQLARAYT---GRQNIVVVDAAYHGTVNLLLDISPRA-FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~~~---~r~~il~~~~~yHG~t~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
                      |||||+|+|+||.||   ||++||+|+++|||+|.+++++++.. ++.. .++.+.+.++|+|+                
T Consensus       144 sEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d----------------  207 (442)
T TIGR03372       144 TESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGD----------------  207 (442)
T ss_pred             hHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCC----------------
Confidence            799999999999996   89999999999999999999987642 2111 11223334445443                


Q ss_pred             HHHHHHHHHH---hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         76 YAQAARNIME---AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        76 ~~~~l~~~i~---~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                       .+.+++.++   .+++++||||+||+||++|+++||++||++++++|++||++||+|||||||||+|+ +|+++++|+.
T Consensus       208 -~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~gv~  285 (442)
T TIGR03372       208 -IEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK-MFACEHEGVQ  285 (442)
T ss_pred             -HHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcccc-chhhhhcCCC
Confidence             334444443   24456999999999999999999999999999999999999999999999999998 8999999999


Q ss_pred             CcEEEecccccCC-cceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        153 PDIITVGKPMGNG-MPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       153 pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      |||+|+||+++|| +|+|++++++++++.+..                               +++++++|++|++.|++
T Consensus       286 PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~  365 (442)
T TIGR03372       286 PDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQ  365 (442)
T ss_pred             CCeeeehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 699999999999887621                               44788999999999987


Q ss_pred             c-------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        201 N-------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       201 ~-------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      +             .|+|+++++. +......+++.|+++||++.+.++.++++||.||+++|++|+|+++++|++++
T Consensus       366 l~~~~~~~i~~vRG~Gl~~giel~-~~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       366 LAAEYPDLIIEARGKGLLMAIEFR-DNEIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             HHHhCCCceEEEecceEEEEEEeC-ChHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            5             6889999996 33456789999999999998765567899999999999999999999998764

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=9.9e-54  Score=400.79  Aligned_cols=268  Identities=28%  Similarity=0.488  Sum_probs=228.6

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcc--ccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF--MLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      |||||+|||+||.||||++||+|+++|||+|.+++++++...  +.. ......+.++|+|+.+++++....++..+.++
T Consensus       113 seA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  192 (445)
T PRK08593        113 SDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYL  192 (445)
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHH
Confidence            699999999999999999999999999999999988875321  111 22233455678898888766555455667778


Q ss_pred             HHHHHHHHhc--CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         78 QAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        78 ~~l~~~i~~~--~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +.++++++..  .+++||||+||+||++|+++||++||++|+++|++||++||+|||||||||+|+ +|+++++|+.||+
T Consensus       193 ~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~-~~a~~~~gv~pDi  271 (445)
T PRK08593        193 APLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK-WSSISHFNITPDL  271 (445)
T ss_pred             HHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch-HHHHHhcCCCCCE
Confidence            8888888643  356999999999999999999999999999999999999999999999999998 7899999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +|+||+++||+|+|++++++++++.+..                             ++++++++++|++.|+++     
T Consensus       272 ~t~gK~l~~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~  351 (445)
T PRK08593        272 MSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYN  351 (445)
T ss_pred             eeecccccCCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999987742                             458889999999999875     


Q ss_pred             -------cCceeEEEEec-------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLS-------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 -------~G~~~~i~~~~-------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                             .|+|+++++..       +...+..+++.|+++||++.+.  .++++||.||+++|++|||+++++|++++++
T Consensus       352 ~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  429 (445)
T PRK08593        352 FVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV--AGNVLRFQPPLVITYEQLDTALNTIEQAFTA  429 (445)
T ss_pred             cEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEecc--CCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence                   78899999862       1234678999999999999753  3589999999999999999999999999998


Q ss_pred             Hhhc
Q psy11784        268 LQMD  271 (284)
Q Consensus       268 ~~~~  271 (284)
                      +...
T Consensus       430 ~~~~  433 (445)
T PRK08593        430 LEAG  433 (445)
T ss_pred             Hhcc
Confidence            8653

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-53  Score=400.31  Aligned_cols=265  Identities=25%  Similarity=0.381  Sum_probs=223.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||||+|+|+||+||||.+||+|+++|||+|.+++++++..... . ......+.++|.|+.++.+++++ +.....+++
T Consensus       140 seAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  218 (459)
T PRK06082        140 TSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDA-DGSDVHYAD  218 (459)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCCh-hHHHHHHHH
Confidence            69999999999999999999999999999999988877543221 1 22334455678888888776543 344566788


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      .++++++. .+++||||+|||||+ |.++||++||++|+++|++||++||+|||||||||+|+ +|+++++|+.|||+|+
T Consensus       219 ~l~~~i~~-~~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~fa~e~~gv~PDiv~~  295 (459)
T PRK06082        219 YLEYVIEK-EGGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGE-WFTHQAYGIEPDILCI  295 (459)
T ss_pred             HHHHHHhc-CCCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hhHhHhhCCCCCEEEe
Confidence            89998874 346999999999998 47789999999999999999999999999999999998 8999999999999999


Q ss_pred             cccccCC-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-------
Q psy11784        159 GKPMGNG-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-------  201 (284)
Q Consensus       159 sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-------  201 (284)
                      ||+++|| +|+|++++++++++.+..                             ++++++++++|+++|+++       
T Consensus       296 gKgl~gG~~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i  375 (459)
T PRK06082        296 GKGLGGGLVPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLI  375 (459)
T ss_pred             cccccCCCCcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            9999999 599999999998765321                             458999999999999886       


Q ss_pred             -----cCceeEEEEecc-------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        202 -----LHIFWCLILLSI-------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       202 -----~G~~~~i~~~~~-------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                           .|+|+++++..+       ...+..+...++++||++.+.  .++++||.||+++|++|||++++++++++.++.
T Consensus       376 ~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~--~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~  453 (459)
T PRK06082        376 GDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVS--QGNVIQLSPPLIITREELTQALAILEEAIAKIC  453 (459)
T ss_pred             eeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEec--CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence                 899999999621       123567888999999999874  368999999999999999999999999999875


Q ss_pred             hc
Q psy11784        270 MD  271 (284)
Q Consensus       270 ~~  271 (284)
                      ++
T Consensus       454 ~~  455 (459)
T PRK06082        454 QD  455 (459)
T ss_pred             hh
Confidence            43

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-53  Score=400.95  Aligned_cols=251  Identities=25%  Similarity=0.462  Sum_probs=210.9

Q ss_pred             CcHHHHHHHHHHHccC---CccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCchHHHHH
Q psy11784          1 SEANDLALQLARAYTG---RQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~~~~---r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
                      |||||+|+|+||.||+   |.+||+|+++|||+|.+++++++..... + .+..+.+.++|        +++        
T Consensus       151 sEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~--------~~d--------  214 (459)
T PRK11522        151 TESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVP--------FGN--------  214 (459)
T ss_pred             hHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccC--------CCC--------
Confidence            7999999999999994   7899999999999999999887543211 1 11111122223        332        


Q ss_pred             HHHHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         76 YAQAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        76 ~~~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                       .+++++.++.   .++++||||+||+||++|+++||++||++++++|++||++||+|||||||||+|+ +|+++++|+.
T Consensus       215 -~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~gv~  292 (459)
T PRK11522        215 -IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHENVQ  292 (459)
T ss_pred             -HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccch-hhhhhccCCC
Confidence             4556666652   3456999999999999999999999999999999999999999999999999998 8999999999


Q ss_pred             CcEEEecccccCC-cceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        153 PDIITVGKPMGNG-MPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       153 pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      |||+|+||++||| +|+|++++++++++.+..                               ++++++++++|+++|++
T Consensus       293 PDivt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~  372 (459)
T PRK11522        293 PDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQ  372 (459)
T ss_pred             CCEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 699999999999886621                               45899999999999987


Q ss_pred             c-------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        201 N-------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       201 ~-------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +             .|+|+++++. +...+..+++.|+++||++.+...+++++||.||+++|++|||+++++|++++++
T Consensus       373 l~~~~~~~i~~VrG~Gl~~giel~-~~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~  451 (459)
T PRK11522        373 LAREYPDLVQEARGKGMLMAIEFV-DNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAA  451 (459)
T ss_pred             HHHhCCCceeeEEeceeEEEEEec-CchHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            5             5889999996 3345678999999999999876556789999999999999999999999999988


Q ss_pred             Hhh
Q psy11784        268 LQM  270 (284)
Q Consensus       268 ~~~  270 (284)
                      +.+
T Consensus       452 ~~~  454 (459)
T PRK11522        452 MRV  454 (459)
T ss_pred             HHH
Confidence            754

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=100.00  E-value=3.8e-53  Score=400.96  Aligned_cols=266  Identities=20%  Similarity=0.349  Sum_probs=220.0

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCC-CchH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSA-DDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~   71 (284)
                      |||||+|||+||+|+      +|++||+|+++|||+|.+++++++..... . ......+.+.|.|+.+++.... +.++
T Consensus       161 sEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  240 (504)
T PLN02760        161 SEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEE  240 (504)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHH
Confidence            699999999999883      57899999999999999988877543211 1 2222334557778777654322 2233


Q ss_pred             HHHHHHHHHHHHHHh-cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEA-HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~-~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....+.+++++++.. .++++||||+|||||++|+++||++||++|+++|++||++||+|||||||||+|+ +|+++++|
T Consensus       241 ~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~-~~a~e~~g  319 (504)
T PLN02760        241 FSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT-MFGCDKYN  319 (504)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch-hhHHHhcC
Confidence            345567788888763 3456999999999999999999999999999999999999999999999999998 89999999


Q ss_pred             CCCcEEEecccccCCc-ceeEEEecHHHHHhch----------h--------------------------hhhHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNGM-PIGAVITSRKIAESLN----------C--------------------------LDDNRPSGKY  193 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~----------~--------------------------l~~~~~~~~~  193 (284)
                      ++|||+|+||+++||+ |+|++++++++++.+.          .                          ++++++++++
T Consensus       320 v~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~  399 (504)
T PLN02760        320 IKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPR  399 (504)
T ss_pred             CCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999995 9999999999998653          1                          4589999999


Q ss_pred             HHHHHHhc-----------cCceeEEEEecc----------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHH
Q psy11784        194 LVRPLGIN-----------LHIFWCLILLSI----------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       194 l~~~L~~~-----------~G~~~~i~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~  252 (284)
                      |+++|+++           .|+|+++++..+          ...+..+++.|+++||++.+.   ++.+||.||+++|++
T Consensus       400 l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g~~lrl~Ppl~it~e  476 (504)
T PLN02760        400 FQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA---GDNIMMSPPLIITPE  476 (504)
T ss_pred             HHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec---CCEEEEECCCCCCHH
Confidence            99999876           789999999621          123567889999999999863   478999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy11784        253 NVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       253 ~id~~~~~l~~~l~~~~~  270 (284)
                      |||+++++|+++++++.+
T Consensus       477 eid~~~~~l~~al~~~~~  494 (504)
T PLN02760        477 EVDELISIYGKALKATEE  494 (504)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999988753

>PRK06105 aminotransferase; Provisional

Probab=100.00  E-value=6e-53  Score=396.79  Aligned_cols=266  Identities=23%  Similarity=0.369  Sum_probs=221.3

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcCCCCCC-CchH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYRGEFSA-DDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~   71 (284)
                      |||||+|||+||.|      ++|++||+|+++|||+|.+++++++... +.. ......+.++|+|+.+++.... ..+.
T Consensus       119 seAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  198 (460)
T PRK06105        119 SEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEA  198 (460)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHH
Confidence            79999999999987      4689999999999999999988875332 211 2222334557888776653222 2234


Q ss_pred             HHHHHHHHHHHHHHhc-CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~-~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....+++++++++... .+++||||+|||||++|++++|++||++|+++|++||++||+|||||||||+|+ +|+++++|
T Consensus       199 ~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~-~f~~~~~~  277 (460)
T PRK06105        199 FATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN-MFGCETFG  277 (460)
T ss_pred             HHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch-hhhHHhcC
Confidence            4556678899988643 456999999999999999999999999999999999999999999999999998 88999999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhch----------h--------------------------hhhHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLN----------C--------------------------LDDNRPSGKY  193 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~----------~--------------------------l~~~~~~~~~  193 (284)
                      +.|||+|+||+++|| +|+|++++++++++.+.          .                          ++++++++++
T Consensus       278 v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~  357 (460)
T PRK06105        278 IKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGAR  357 (460)
T ss_pred             CCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999999999 69999999999987653          0                          4589999999


Q ss_pred             HHHHHHhc-----------cCceeEEEEecc----------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHH
Q psy11784        194 LVRPLGIN-----------LHIFWCLILLSI----------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       194 l~~~L~~~-----------~G~~~~i~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~  252 (284)
                      |+++|+++           .|+|+++++.++          ...+..+.+.++++||++.+.   ++++||.||+++|++
T Consensus       358 l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~---g~~i~l~Ppl~it~~  434 (460)
T PRK06105        358 LQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM---GDTLAFCPPLIITAA  434 (460)
T ss_pred             HHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec---CCEEEEECCCccCHH
Confidence            99999886           899999999621          123467888999999999863   479999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy11784        253 NVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       253 ~id~~~~~l~~~l~~~~~  270 (284)
                      |||+++++|+++++++..
T Consensus       435 eid~~~~~l~~~l~~~~~  452 (460)
T PRK06105        435 QVDEMVDRFGRALDDVAA  452 (460)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999988753

>PRK06541 hypothetical protein; Provisional

Probab=100.00  E-value=7.2e-53  Score=396.06  Aligned_cols=268  Identities=25%  Similarity=0.358  Sum_probs=224.0

Q ss_pred             CcHHHHHHHHHHHc---c---CCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCC-CCCCchH
Q psy11784          1 SEANDLALQLARAY---T---GRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGE-FSADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~---~---~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~   71 (284)
                      |||||+|||+||.|   +   +|++||+|+++|||+|.+++++++......  ......+.++|.|+.++++ ++++.++
T Consensus       122 seAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  201 (460)
T PRK06541        122 SEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEA  201 (460)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHH
Confidence            79999999999999   3   589999999999999999998875432211  2233445567888888776 5444445


Q ss_pred             HHHHHHHHHHHHHHhc-CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~-~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....+++.++++++.. ++++|+||+|||||++|++++|++||++|+++|++||++||+|||||||||+|+ +|+++++|
T Consensus       202 ~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~-~~a~~~~g  280 (460)
T PRK06541        202 FGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE-MFGCERFG  280 (460)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch-hhhhhhcC
Confidence            5667788999998753 456999999999999999999999999999999999999999999999999998 78999999


Q ss_pred             CCCcEEEecccccCCc-ceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNGM-PIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~  196 (284)
                      +.||++|+||+++||+ |+|++++++++++.+..                                 ++++++++++|++
T Consensus       281 v~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~  360 (460)
T PRK06541        281 YVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRA  360 (460)
T ss_pred             CCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            9999999999999997 99999999999876521                                 3488899999999


Q ss_pred             HHHhc-----------cCceeEEEEeccc--------H-----HHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHH
Q psy11784        197 PLGIN-----------LHIFWCLILLSIT--------Y-----YLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       197 ~L~~~-----------~G~~~~i~~~~~~--------~-----~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~  252 (284)
                      +|+++           .|+|+++++..+.        .     ....+++.|+++||++.+.+.+.++|||.||+++|++
T Consensus       361 ~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~  440 (460)
T PRK06541        361 TLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQE  440 (460)
T ss_pred             HHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHH
Confidence            99875           7899999985211        0     1135778999999999875444589999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy11784        253 NVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       253 ~id~~~~~l~~~l~~~~  269 (284)
                      |||+++++|+++++++.
T Consensus       441 ~id~~~~~l~~~l~~~~  457 (460)
T PRK06541        441 EFDEIEQILRSVLTEAW  457 (460)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998753

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=100.00  E-value=6e-53  Score=395.00  Aligned_cols=264  Identities=25%  Similarity=0.373  Sum_probs=219.4

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCC-CcCCCCCCCchH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPD-TYRGEFSADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~   71 (284)
                      |||||+|+|+||.|+      +|.+||+|++||||+|.+++++++......  ......+.++|+++ .++.++....++
T Consensus       116 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  195 (442)
T PRK13360        116 SESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPE  195 (442)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHH
Confidence            799999999999995      588999999999999999998876432221  22223344567664 355555444445


Q ss_pred             HHHHHHHHHHHHHHhc-CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~-~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....++++++++++.. .+++||||+||+||++|+++||++||++|+++|++||++||+|||||||||+|+ +|+++++|
T Consensus       196 ~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g  274 (442)
T PRK13360        196 HGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA-PFAAQYFG  274 (442)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chhhhhcC
Confidence            5666788999998754 356999999999999999999999999999999999999999999999999998 78999999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhch----------h--------------------------hhhHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLN----------C--------------------------LDDNRPSGKY  193 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~----------~--------------------------l~~~~~~~~~  193 (284)
                      +.|||+|+||+++|| +|+|++++++++++.+.          .                          ++++++++++
T Consensus       275 v~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~  354 (442)
T PRK13360        275 VTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPY  354 (442)
T ss_pred             CCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999999999999 79999999999987542          1                          4588899999


Q ss_pred             HHHHHHhc-----------cCceeEEEEecc----cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHH
Q psy11784        194 LVRPLGIN-----------LHIFWCLILLSI----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       194 l~~~L~~~-----------~G~~~~i~~~~~----~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~  258 (284)
                      +++.|+++           .|+++++++.+.    ...+..+++.|+++||++.+.   ++++||+||+++|++|||+++
T Consensus       355 l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~---~~~lr~~Ppl~~t~~eid~~~  431 (442)
T PRK13360        355 WEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT---GDILALSPPLIIEEAQIDELF  431 (442)
T ss_pred             HHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEec---CCEEEEeCCCccCHHHHHHHH
Confidence            99999865           578889998631    234567888999999999853   478999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy11784        259 STLNRIFTSL  268 (284)
Q Consensus       259 ~~l~~~l~~~  268 (284)
                      ++|+++++++
T Consensus       432 ~~l~~~l~~~  441 (442)
T PRK13360        432 DILAQALKET  441 (442)
T ss_pred             HHHHHHHHHh
Confidence            9999999764

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=100.00  E-value=1.7e-52  Score=392.17  Aligned_cols=264  Identities=25%  Similarity=0.369  Sum_probs=219.8

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCC-CcCCCCCCCchH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPD-TYRGEFSADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~   71 (284)
                      |||||+|+|+||.|+      +|.+||+|++||||+|.+++++++......  ......+.++|+|+ .+++++....++
T Consensus       119 seAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (445)
T PRK09221        119 SESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPE  198 (445)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHH
Confidence            799999999999996      578999999999999999998875432211  22223344567665 555545444445


Q ss_pred             HHHHHHHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....+.++++++++..+ +++||||+|||||++|+++||++||++|+++|++||++||+|||||||||+|+ +|+++++|
T Consensus       199 ~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~~~~~~g  277 (445)
T PRK09221        199 HGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA-AFAAERFG  277 (445)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch-hhHHHhcC
Confidence            55667788999888554 56999999999999999999999999999999999999999999999999998 88999999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhch----------h--------------------------hhhHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLN----------C--------------------------LDDNRPSGKY  193 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~----------~--------------------------l~~~~~~~~~  193 (284)
                      +.||++|+||+++|| +|+|++++++++++.+.          .                          ++++++++++
T Consensus       278 v~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~  357 (445)
T PRK09221        278 VTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPY  357 (445)
T ss_pred             CCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999999999 69999999999988642          0                          4588899999


Q ss_pred             HHHHHHhc-----------cCceeEEEEecc----cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHH
Q psy11784        194 LVRPLGIN-----------LHIFWCLILLSI----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       194 l~~~L~~~-----------~G~~~~i~~~~~----~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~  258 (284)
                      |++.|+++           .|+|.++++.+.    ...+..+++.|+++||++.+.   ++++||+||+++|++|||+++
T Consensus       358 l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---~~~lr~~Ppl~~t~~eid~~~  434 (445)
T PRK09221        358 FEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT---GDTIALSPPLIIEKAQIDELV  434 (445)
T ss_pred             HHHHHHhhccCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec---CCEEEEECCccCCHHHHHHHH
Confidence            99999875           688999998631    123567889999999999753   579999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy11784        259 STLNRIFTSL  268 (284)
Q Consensus       259 ~~l~~~l~~~  268 (284)
                      ++|+++++++
T Consensus       435 ~~l~~~l~~~  444 (445)
T PRK09221        435 DALGDALRAV  444 (445)
T ss_pred             HHHHHHHHhh
Confidence            9999999765

>PRK12403 putative aminotransferase; Provisional

Probab=100.00  E-value=3.1e-52  Score=391.96  Aligned_cols=266  Identities=21%  Similarity=0.303  Sum_probs=217.6

Q ss_pred             CcHHHHHHHHHHHcc---C---CccEEEEcCCCcccchhhhcCCCCcccc-cCCCCCceEEccCCCCcCCCCCCCchHHH
Q psy11784          1 SEANDLALQLARAYT---G---RQNIVVVDAAYHGTVNLLLDISPRAFML-SSEKKPWVHVIPFPDTYRGEFSADDPQAA   73 (284)
Q Consensus         1 seA~e~AlklAr~~~---~---r~~il~~~~~yHG~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (284)
                      |||||+|||+||+|+   |   |.+|++|.+||||+|.+++++++..... ..+....+.++|.|+.++.+++....+..
T Consensus       125 seA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  204 (460)
T PRK12403        125 SEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFG  204 (460)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHH
Confidence            699999999999983   4   5678999999999999999887644222 12233345567888877655433333445


Q ss_pred             HHHHHHHHHHHH-hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         74 QKYAQAARNIME-AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        74 ~~~~~~l~~~i~-~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                      +.+++++++.+. ...+++||||+|||||++|++++|++||++|+++|++||++||+|||||||||+|+ +|+++++|++
T Consensus       205 ~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~-~~a~e~~gv~  283 (460)
T PRK12403        205 RRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGE-WFAHEHFGFE  283 (460)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhhhhhcCCC
Confidence            556777877665 33456999999999999999999999999999999999999999999999999998 8999999999


Q ss_pred             CcEEEecccccCCc-ceeEEEecHHHHHhchh---------------------------------hhhHH-HHHHHHHHH
Q psy11784        153 PDIITVGKPMGNGM-PIGAVITSRKIAESLNC---------------------------------LDDNR-PSGKYLVRP  197 (284)
Q Consensus       153 pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~~---------------------------------l~~~~-~~~~~l~~~  197 (284)
                      |||+|+||+++||+ |+|++++++++++.+..                                 +++++ +++++|++.
T Consensus       284 PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~  363 (460)
T PRK12403        284 PDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRC  363 (460)
T ss_pred             CCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            99999999999995 99999999999887621                                 45785 899999999


Q ss_pred             HHhc------------cCceeEEEEecc-------c---HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHH
Q psy11784        198 LGIN------------LHIFWCLILLSI-------T---YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       198 L~~~------------~G~~~~i~~~~~-------~---~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id  255 (284)
                      |+++            .|+|++++++.+       .   .....+.+.++++|+++.+.   ++.+||.||+++|++|+|
T Consensus       364 L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---~~~~~l~Ppl~it~~eid  440 (460)
T PRK12403        364 LREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST---LGRMIMAPALVAGRAEID  440 (460)
T ss_pred             HHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec---CCEEEEECCCCCCHHHHH
Confidence            9865            899999999621       1   12345667789999999853   367999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy11784        256 FIVSTLNRIFTSLQM  270 (284)
Q Consensus       256 ~~~~~l~~~l~~~~~  270 (284)
                      +++++|+++++++.+
T Consensus       441 ~~~~~l~~al~~~~~  455 (460)
T PRK12403        441 ELVDKTRIAVDRTAR  455 (460)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998754

>PRK06149 hypothetical protein; Provisional

Probab=100.00  E-value=2e-52  Score=423.08  Aligned_cols=265  Identities=40%  Similarity=0.649  Sum_probs=223.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc---CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS---SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      |||||+|||+||+||||++||+|+++|||+|.++.+++.......   ...+++++.++.|+.++++++.++  ...++.
T Consensus       651 sEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~--~~~~~~  728 (972)
T PRK06149        651 SEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGAD--SAADYV  728 (972)
T ss_pred             hHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcc--cHHHHH
Confidence            799999999999999999999999999999999877754321111   233456677788888887775332  123344


Q ss_pred             HHHHHHHH---hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         78 QAARNIME---AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        78 ~~l~~~i~---~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      +++++.++   ..++++||||+|||||++|++++|++||++|+++|++||+++|+|||||||||+|+.+|+++++|+.||
T Consensus       729 ~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD  808 (972)
T PRK06149        729 RDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPD  808 (972)
T ss_pred             HHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCC
Confidence            55555443   244569999999999999999999999999999999999999999999999999975679999999999


Q ss_pred             EEEecccccCCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        155 IITVGKPMGNGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       155 iv~~sK~l~~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      |+|+||++|||+|+|++++++++++.+..                              +++++++|++|+++|+++   
T Consensus       809 ivt~gK~lg~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~  888 (972)
T PRK06149        809 IITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADR  888 (972)
T ss_pred             EEEecccccCCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999987641                              458999999999999886   


Q ss_pred             ---------cCceeEEEEec-------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        202 ---------LHIFWCLILLS-------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       202 ---------~G~~~~i~~~~-------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                               .|+|+++++..       ....+..+++.|+++||++.+.+...++|||.||+++|++|||+++++|++++
T Consensus       889 ~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l  968 (972)
T PRK06149        889 HPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVL  968 (972)
T ss_pred             CCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence                     89999999962       23456789999999999999877667999999999999999999999999998


Q ss_pred             HH
Q psy11784        266 TS  267 (284)
Q Consensus       266 ~~  267 (284)
                      ++
T Consensus       969 ~~  970 (972)
T PRK06149        969 TE  970 (972)
T ss_pred             Hh
Confidence            75

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.8e-52  Score=389.16  Aligned_cols=268  Identities=25%  Similarity=0.397  Sum_probs=224.6

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCC--ccccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPR--AFMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      |||||+|||+||.||||++||+|+++|||+|.++++++..  .+... ....+.+.++|+|+.++.+...+.++....++
T Consensus       113 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (433)
T PRK08117        113 AEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECL  192 (433)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHH
Confidence            6999999999999999999999999999999998877643  12211 22334456678888776654433333444567


Q ss_pred             HHHHHHHHh--cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         78 QAARNIMEA--HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        78 ~~l~~~i~~--~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +++++++++  .++++||||+|||||++|+++++++||++|+++|++||++||+|||||||||+|+ +|+++++|+.||+
T Consensus       193 ~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~-~~~~~~~gv~pDi  271 (433)
T PRK08117        193 RDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE-WFAAQTFGVVPDI  271 (433)
T ss_pred             HHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc-chhHhhcCCCCCE
Confidence            888888874  3456999999999999999999999999999999999999999999999999998 7888899999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +|+||++++|+|+|++++++++++.+..                             +++++++++++++.|+++     
T Consensus       272 ~t~sK~lg~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~  351 (433)
T PRK08117        272 MTIAKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHP  351 (433)
T ss_pred             eehhhhccCCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999987643                             347888899999998875     


Q ss_pred             -------cCceeEEEEec-----ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        202 -------LHIFWCLILLS-----ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       202 -------~G~~~~i~~~~-----~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                             .|+|+++++.+     +......+.+.|+++||++.+.+..++++||.||+++|+++|++++++|+++++++.
T Consensus       352 ~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~  431 (433)
T PRK08117        352 VIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEYE  431 (433)
T ss_pred             ceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence                   67899999962     223467788999999999987655568999999999999999999999999998764

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=3.4e-52  Score=388.33  Aligned_cols=259  Identities=23%  Similarity=0.354  Sum_probs=215.5

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCCchH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (284)
                      |||||+|||+||+|      ++|++||+|++||||+|.+++++++..  ++.. ........++|+|+...   .   +.
T Consensus       114 seAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~---~~  187 (429)
T PRK06173        114 SVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKF---G---EE  187 (429)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCccc---c---hh
Confidence            79999999999998      478999999999999999998886532  1111 11222334566665421   1   23


Q ss_pred             HHHHHHHHHHHHHHhcCCCeeEEEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAHRDNIATLICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~~~~vaavi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....+++.+++.++.+++++||||+||+ ||+||+++||++||++|+++|++||++||+|||||||||+|+ +|+++++|
T Consensus       188 ~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g  266 (429)
T PRK06173        188 WNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGK-LFALEHAG  266 (429)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCc-chHHHhcC
Confidence            3445678888988766667999999997 999999999999999999999999999999999999999998 88999999


Q ss_pred             CCCcEEEecccccCCc-ceeEEEecHHHHHhch--------h--------------------------hhhHHHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNGM-PIGAVITSRKIAESLN--------C--------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~--------~--------------------------l~~~~~~~~~l~  195 (284)
                      +.|||+|+||+++||+ |++++++++++++.+.        .                          ++++++++++|+
T Consensus       267 v~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~  346 (429)
T PRK06173        267 VVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLK  346 (429)
T ss_pred             CCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999999999995 9999999999988652        1                          458889999999


Q ss_pred             HHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        196 RPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       196 ~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      +.|+++           .|+|+++++. +...+..+++.|+++||++.+.   +++|||.||+++|++|+|+++++|+++
T Consensus       347 ~~L~~~~~~~~v~~vRg~Gl~~~iel~-~~~~~~~i~~~l~e~Gi~v~~~---g~~l~~~Ppl~it~~ei~~~~~~l~~~  422 (429)
T PRK06173        347 QELAPAAEFDSVAEVRVLGAIGVVEMK-EPVNMATLQPRFVEHGIWVRPF---GKLVYIMPPFIISPDELSQLTSGLLRV  422 (429)
T ss_pred             HHHHHhhcCCCeeeeeccceEEEEEeC-CcccHHHHHHHHHHCCeEEEec---CCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence            999854           5899999995 3334678899999999999864   479999999999999999999999999


Q ss_pred             HHHHhh
Q psy11784        265 FTSLQM  270 (284)
Q Consensus       265 l~~~~~  270 (284)
                      ++++.+
T Consensus       423 l~~~~~  428 (429)
T PRK06173        423 LKQEYN  428 (429)
T ss_pred             HHHHhc
Confidence            987643

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=100.00  E-value=2.1e-52  Score=388.85  Aligned_cols=254  Identities=22%  Similarity=0.321  Sum_probs=211.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||||+|+|+||+||||++||+|++||||+|.+++++++... +.. ......+.++|+|+....         ...+++
T Consensus       109 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------~~~~~~  179 (412)
T TIGR02407       109 TNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGG---------DVDTIA  179 (412)
T ss_pred             hHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCcccc---------chhHHH
Confidence            799999999999999999999999999999999998875432 211 112233445666643211         012367


Q ss_pred             HHHHHHHhcC---CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         79 AARNIMEAHR---DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        79 ~l~~~i~~~~---~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .++++++++.   +++||||+||+||++|++++|++||++|+++|++||++||+|||||||||+|+ +|+++++++.||+
T Consensus       180 ~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~~~~~v~PDi  258 (412)
T TIGR02407       180 YFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGT-FFSFEPAGIEPDI  258 (412)
T ss_pred             HHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hHHhcccCCCCCE
Confidence            7888887543   35899999999999999999999999999999999999999999999999998 8899999999999


Q ss_pred             EEecccccC-CcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        156 ITVGKPMGN-GMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       156 v~~sK~l~~-G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +++||++++ |+|+|++++++++ +.+..                              .+++++++++++++|+++   
T Consensus       259 ~~~~K~lg~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~  337 (412)
T TIGR02407       259 VCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAE  337 (412)
T ss_pred             EEechhccCCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999 8999999999886 44321                              347888899999988763   


Q ss_pred             ----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 ----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 ----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                                .|+|+++++. +......+.+.|+++||++.+.++++++|||.||+++|++|+|+++++|+++++
T Consensus       338 ~~~~~~~vrg~Gl~~~l~l~-~~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~  411 (412)
T TIGR02407       338 YPELIKQVRGRGLMQGIECG-DGDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVE  411 (412)
T ss_pred             CCCceEeeecceeEEEEEec-ChHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence                      6889999994 445577899999999999987766678999999999999999999999999885

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=5.3e-52  Score=387.00  Aligned_cols=261  Identities=22%  Similarity=0.364  Sum_probs=218.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      |||||+|||+||.||||++||+|+++|||+|.+++++++..  +... ......+.++|+|+.+++.   +    .+.++
T Consensus       111 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~----~~~~~  183 (425)
T PRK07495        111 AEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGV---S----VEQSL  183 (425)
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccc---c----HHHHH
Confidence            69999999999999999999999999999999988876531  2211 2222334567777654432   1    12346


Q ss_pred             HHHHHHHHh--cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         78 QAARNIMEA--HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        78 ~~l~~~i~~--~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +.++++++.  .++++||||+||+|+++|++++|++|+++|+++|++||++||+|||||||||+|+ +|+++++|+.|||
T Consensus       184 ~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~a~~~~gv~pDi  262 (425)
T PRK07495        184 AALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK-LFAMEHHEVAADL  262 (425)
T ss_pred             HHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC-ceeecccCCCCCE
Confidence            777888763  3456999999999999999999999999999999999999999999999999998 7899999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +|+||++++|+|+|++++++++++.+..                             .+++++++++|+++|+++     
T Consensus       263 ~tlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~  342 (425)
T PRK07495        263 TTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVP  342 (425)
T ss_pred             EeehhhhcCCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999987643                             347889999999999876     


Q ss_pred             -------cCceeEEEEecc------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSI------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 -------~G~~~~i~~~~~------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                             .|+|+++++.+.      ...+..+.+.++++|+++.+.+..++++||.||+++|++|+|+++++|+++++++
T Consensus       343 ~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~  422 (425)
T PRK07495        343 EIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASILEA  422 (425)
T ss_pred             CeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence                   789999999621      2346678899999999998766667999999999999999999999999999876


Q ss_pred             h
Q psy11784        269 Q  269 (284)
Q Consensus       269 ~  269 (284)
                      .
T Consensus       423 ~  423 (425)
T PRK07495        423 S  423 (425)
T ss_pred             h
Confidence            4

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=100.00  E-value=3.3e-52  Score=389.05  Aligned_cols=259  Identities=22%  Similarity=0.338  Sum_probs=215.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||||+|||+||+||||++||+|++||||+|.+++++++... +.. ......+.++|+|+.++..         ..+++
T Consensus       113 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---------~~~~~  183 (425)
T PRK09264        113 TNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGD---------VDTLA  183 (425)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccc---------hhHHH
Confidence            699999999999999999999999999999999998875432 211 1222345567777543211         11267


Q ss_pred             HHHHHHHhcC---CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         79 AARNIMEAHR---DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        79 ~l~~~i~~~~---~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +++++++++.   +++||||+|||||++|++++|++||++|+++|++||++||+|||||||||+|+ +|+++++++.||+
T Consensus       184 ~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~~~~~~~v~PDi  262 (425)
T PRK09264        184 YLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT-FFSFERAGITPDI  262 (425)
T ss_pred             HHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccH-HHHHhhcCCCCCE
Confidence            8888887432   35999999999999999999999999999999999999999999999999997 8899999999999


Q ss_pred             EEecccccC-CcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        156 ITVGKPMGN-GMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       156 v~~sK~l~~-G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +|+||++++ |+|+|++++++++. .+..                              ++++++++++|+++|+++   
T Consensus       263 ~t~~K~l~~~G~pigav~~~~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~~  341 (425)
T PRK09264        263 VTLSKSISGYGLPMALVLIKPELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAK  341 (425)
T ss_pred             EEeccccCCCccceEEEEEchhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999998 89999999998874 3321                              347888899998888663   


Q ss_pred             ----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        202 ----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       202 ----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                                .|+++++++. +......+++.|+++||++.+.+.+.++|||.||+++|+++|++++++|+++++++.++
T Consensus       342 ~~~~~~~vrg~Gl~~~i~l~-~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~~  420 (425)
T PRK09264        342 YPGLGAEVRGRGMMQGIDFG-DGELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLAE  420 (425)
T ss_pred             CCCceecceecccEEEEEec-ChHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence                      5788899884 44567789999999999998876667899999999999999999999999999887544

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=9e-52  Score=387.15  Aligned_cols=265  Identities=25%  Similarity=0.415  Sum_probs=222.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--ccc-cCCCCCceEEccCCCCcCCCCC-CCchHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FML-SSEKKPWVHVIPFPDTYRGEFS-ADDPQAAQKY   76 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   76 (284)
                      |||||+|||+||+||||++|++|++||||+|.+++++++..  .+. .......+.++|+|+.++.+++ .+.++..+.+
T Consensus       125 sEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (441)
T PRK05769        125 TESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAV  204 (441)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHH
Confidence            79999999999999999999999999999999998876432  111 1223345666888888888776 3334445566


Q ss_pred             HHHHHH-HHHh--cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC
Q psy11784         77 AQAARN-IMEA--HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        77 ~~~l~~-~i~~--~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                      ++.+++ +++.  .++++||||+||+||++|++++|++||++|+++|++||++||+|||||||||+|+ +|+++++|+.|
T Consensus       205 ~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~-~~a~~~~gv~p  283 (441)
T PRK05769        205 LDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEHFGVEP  283 (441)
T ss_pred             HHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-eehhhccCCCC
Confidence            788888 4443  3456999999999999999999999999999999999999999999999999998 78999999999


Q ss_pred             cEEEecccccCCcceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        154 DIITVGKPMGNGMPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       154 Div~~sK~l~~G~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      |++|+||++++|+|+|++++++++++.+..                           ++++++++++|++.|+++     
T Consensus       284 Divt~~K~l~~G~p~gav~~~~~i~~~~~~~~~~T~~g~p~~~aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~~l~~~~~  363 (441)
T PRK05769        284 DIITLAKAIAGGLPLGAVIGRAELMFLPPGSHANTFGGNPVAAAAALATLEELEEGLLENAQKLGEYLRKELKELKEKYE  363 (441)
T ss_pred             CEEEEcccccCCcccEEEEEehhhhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999865432                           247888999999999876     


Q ss_pred             -------cCceeEEEEecc-----cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSI-----TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 -------~G~~~~i~~~~~-----~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                             .|+|+++++..+     ......+.+.|+++||++.+.+  .+++||+||+++|++|||+++++|+++++++
T Consensus       364 ~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        364 FIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAG--KSAIRIIPPLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             CeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                   688999999622     2356778899999999997643  4899999999999999999999999998764

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=100.00  E-value=2.3e-51  Score=383.12  Aligned_cols=264  Identities=28%  Similarity=0.473  Sum_probs=220.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      |||||+|||+||.||||++||+|++||||+|.+++++++..  +... ..+++...++|+|+.++.+.... +.....++
T Consensus       104 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  182 (420)
T TIGR00700       104 AEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDK-QLSTDGEL  182 (420)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccc-chhHHHHH
Confidence            79999999999999999999999999999999999877532  2221 22334455678887776543321 12233457


Q ss_pred             HHHHHHHH--hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         78 QAARNIME--AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        78 ~~l~~~i~--~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +.+++++.  ..++++||||+|||||++|..+++++|+++|+++|++||++||+|||||||||+|+ +|+++++++.||+
T Consensus       183 ~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~~~~~~~pDi  261 (420)
T TIGR00700       183 AAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFACEHEGPEPDL  261 (420)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHHhhcCCCCCE
Confidence            78888774  34567999999999999999999999999999999999999999999999999998 7899999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +++||++++|+|+|++++++++++.+..                             .++++++++++++.|+++     
T Consensus       262 ~~lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~  341 (420)
T TIGR00700       262 ITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDP  341 (420)
T ss_pred             EEeeccccCCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999987742                             347888889999888775     


Q ss_pred             -------cCceeEEEEec------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLS------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 -------~G~~~~i~~~~------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                             .|+|+++++..      +......+.+.|+++||++.|++.+++++||.||+++|+++|++++++|+++++
T Consensus       342 ~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       342 RIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             CEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence                   78899998841      224567788889999999998776779999999999999999999999998874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG1402|consensus

Probab=100.00  E-value=3.9e-52  Score=358.17  Aligned_cols=244  Identities=23%  Similarity=0.408  Sum_probs=209.8

Q ss_pred             CcHHHHHHHHHHHcc--------CCccEEEEcCCCcccchhhhcCCCCc--ccccCCC-CCceEEccCCCCcCCCCCCCc
Q psy11784          1 SEANDLALQLARAYT--------GRQNIVVVDAAYHGTVNLLLDISPRA--FMLSSEK-KPWVHVIPFPDTYRGEFSADD   69 (284)
Q Consensus         1 seA~e~AlklAr~~~--------~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   69 (284)
                      .||+|.|+||||.|.        .+.+|++-.++|||+|.++.+++...  +....++ ++.+..+|        |++  
T Consensus       126 aEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~--------Y~d--  195 (427)
T KOG1402|consen  126 AEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVP--------YGD--  195 (427)
T ss_pred             hhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeec--------cCC--
Confidence            489999999999762        46789999999999999999887543  2211222 22233333        343  


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc
Q psy11784         70 PQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ  149 (284)
Q Consensus        70 ~~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~  149 (284)
                             +++|+..++  .+.+|++|+|||||++|+++||++||+++++||++|++++|.||||||+||||+ +|++++.
T Consensus       196 -------~eale~~l~--~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk-~la~d~e  265 (427)
T KOG1402|consen  196 -------AEALEVALK--SPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK-LLACDYE  265 (427)
T ss_pred             -------HHHHHHHhc--CCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc-EEEeehh
Confidence                   788999887  366999999999999999999999999999999999999999999999999998 8999999


Q ss_pred             CCCCcEEEecccccCC-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHH
Q psy11784        150 GAVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       150 g~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~  199 (284)
                      ++.||++.|+|+++|| +|++++++++++|..+..                             .++.+.+|..|+.+|+
T Consensus       266 nv~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~  345 (427)
T KOG1402|consen  266 NVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLN  345 (427)
T ss_pred             hcCCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 699999999999988765                             4588899999999999


Q ss_pred             hc-------------cCceeEEEEecc---cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        200 IN-------------LHIFWCLILLSI---TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       200 ~~-------------~G~~~~i~~~~~---~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      ++             +|++.++++.+.   ...+..+|-.|.++|++..|  ..++.|||.||++++++|+++.++++.+
T Consensus       346 ~l~~~~p~~v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkp--tH~~IiRfaPPL~I~e~dl~eg~e~i~k  423 (427)
T KOG1402|consen  346 KLQKKFPHVVKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKP--THGNIIRFAPPLVISEEDLREGIEAIEK  423 (427)
T ss_pred             hccccccchhheeeccceEEEEEeccccccchhHHHHHHcccccccccCC--CCCCeEEecCCcccCHHHHHHHHHHHHH
Confidence            88             899999999743   25678899999999999997  4578999999999999999999999988


Q ss_pred             HHH
Q psy11784        264 IFT  266 (284)
Q Consensus       264 ~l~  266 (284)
                      ++.
T Consensus       424 ~i~  426 (427)
T KOG1402|consen  424 TIA  426 (427)
T ss_pred             Hhc
Confidence            764

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=100.00  E-value=7.4e-52  Score=385.71  Aligned_cols=256  Identities=23%  Similarity=0.359  Sum_probs=212.3

Q ss_pred             CcHHHHHHHHHHHc-----cCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY-----TGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~-----~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|+|+||+|     ++|++||+|++||||+|.+++++++..  .+.. .+......++|.|+.+..      ++.
T Consensus       113 sEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~  186 (428)
T PRK07986        113 SVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFD------GEW  186 (428)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccc------hhh
Confidence            79999999999998     689999999999999999999886532  1111 222233334566643211      112


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ...+++++++.++..+++++|||+||+ ||.+|+++++++||++|+++|++||++||+|||||||||+|+ +|+++++|+
T Consensus       187 ~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~-~fa~~~~gv  265 (428)
T PRK07986        187 DERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK-LFACEHAGI  265 (428)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCC-eeeecccCC
Confidence            233477888888766667999999996 999999999999999999999999999999999999999998 889999999


Q ss_pred             CCcEEEecccccCC-cceeEEEecHHHHHhch--------h--------------------------hhhHHHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNG-MPIGAVITSRKIAESLN--------C--------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       152 ~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~--------~--------------------------l~~~~~~~~~l~~  196 (284)
                      .|||+|+||+++|| +|+|++++++++++.+.        .                          ++++++++++|++
T Consensus       266 ~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~  345 (428)
T PRK07986        266 APDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLRE  345 (428)
T ss_pred             CCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            99999999999999 59999999999988652        1                          4588899999999


Q ss_pred             HHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        197 PLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       197 ~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      .|+++           .|+|+++++. +...+..+.+.|+++||++.+.   +++|||.||+++|++||++++++|++++
T Consensus       346 ~l~~l~~~~~i~~vRg~Gl~~~ve~~-~~~~~~~~~~~l~~~Gl~~~~~---g~~i~~~Ppl~it~~ei~~~~~~l~~~l  421 (428)
T PRK07986        346 ELAPLRDAPMVADVRVLGAIGVVETT-RPVNMAALQRFFVEQGVWIRPF---GKLIYLMPPYIILPEQLQRLTAAVNRAV  421 (428)
T ss_pred             HHHHHhcCCCEEeEeccceEEEEEeC-CcccHHHHHHHHHHCCcEEEec---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            99875           5999999995 2234668899999999999864   4799999999999999999999999998


Q ss_pred             HH
Q psy11784        266 TS  267 (284)
Q Consensus       266 ~~  267 (284)
                      ++
T Consensus       422 ~~  423 (428)
T PRK07986        422 QD  423 (428)
T ss_pred             hh
Confidence            54

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3.3e-51  Score=381.73  Aligned_cols=258  Identities=25%  Similarity=0.420  Sum_probs=216.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      |||||+|||+||+||||++||+|+++|||+|.+++++++..  ++.. ..+++.+.++|+|+..++..       ...++
T Consensus       111 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------~~~~~  183 (421)
T PRK06777        111 AEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVS-------VEEAL  183 (421)
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcC-------HHHHH
Confidence            79999999999999999999999999999999999887532  2221 22333445567676443211       12346


Q ss_pred             HHHHHHHHh--cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         78 QAARNIMEA--HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        78 ~~l~~~i~~--~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +.++++++.  .++++||||+||+||++|+.++|++||++|+++|++||++||+|||||||||+|+ +|+++++++.||+
T Consensus       184 ~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~-~~~~~~~~~~pDi  262 (421)
T PRK06777        184 SSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK-LFAMEYYDVKPDL  262 (421)
T ss_pred             HHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc-hhhhhhcCCCCCE
Confidence            778888863  3466999999999999999999999999999999999999999999999999997 7899999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +|+||++++|+|+|++++++++++.+..                             ++++++++++++++|+++     
T Consensus       263 v~~sK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~  342 (421)
T PRK06777        263 ITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCP  342 (421)
T ss_pred             EeeehhhcCCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999987753                             458889999999999875     


Q ss_pred             -------cCceeEEEEecc------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSI------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 -------~G~~~~i~~~~~------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                             .|+|+++++...      .+....+.+.++++||++.+++.+++++||.||+++|++++++++++|++++.
T Consensus       343 ~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        343 AIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             CeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence                   789999888521      23456778888999999998877778999999999999999999999998874

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=100.00  E-value=5.1e-51  Score=383.70  Aligned_cols=270  Identities=25%  Similarity=0.400  Sum_probs=223.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      |||||+|||+||+||||++||+|++||||+|.+++++++..  .+.. ....+.+.++|+|+.++.+.....+.....++
T Consensus       125 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (451)
T PRK06918        125 AEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMI  204 (451)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHH
Confidence            69999999999999999999999999999999999876532  2211 22334455678887776554332233444556


Q ss_pred             HHHHHHHHh--cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         78 QAARNIMEA--HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        78 ~~l~~~i~~--~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +.+++.+..  .++++||||+||+||++|.++++++|+++|+++|++||++||+|||||||||+|+ +++++++++.||+
T Consensus       205 ~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~-~~a~~~~~v~pDi  283 (451)
T PRK06918        205 EEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGK-YFAIEHFDVVPDL  283 (451)
T ss_pred             HHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCc-eehhHhcCCCCCE
Confidence            677776642  3456999999999999999999999999999999999999999999999999997 7888999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +++||++++|+|+|++++++++++.+..                             .+++++++++++++|+++     
T Consensus       284 ~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~  363 (451)
T PRK06918        284 ITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYN  363 (451)
T ss_pred             EeeehhhcCCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999987643                             347888899999888765     


Q ss_pred             -------cCceeEEEEe-------cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILL-------SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 -------~G~~~~i~~~-------~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                             .|+|+++++.       ++......+.+.|+++||++.+++.+++++||.||+++|+++||+++++|++++++
T Consensus       364 ~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~  443 (451)
T PRK06918        364 CIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQA  443 (451)
T ss_pred             CceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence                   6788888884       12345678888999999999987666799999999999999999999999999988


Q ss_pred             Hhhc
Q psy11784        268 LQMD  271 (284)
Q Consensus       268 ~~~~  271 (284)
                      +.++
T Consensus       444 ~~~~  447 (451)
T PRK06918        444 CYEK  447 (451)
T ss_pred             HHHh
Confidence            7543

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=3.2e-51  Score=381.26  Aligned_cols=254  Identities=20%  Similarity=0.309  Sum_probs=208.8

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCCchH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (284)
                      |||||+|||+||+|+      +|.+||+|++||||+|.+++++++..  .+.. .+......++|.|.....     ..+
T Consensus       110 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~  184 (422)
T PRK05630        110 SVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGS-----SPQ  184 (422)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCC-----ChH
Confidence            799999999999995      68899999999999999999887532  1111 112223344566642111     112


Q ss_pred             HHHHHHHHHHHHHHhcCCCeeEEEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAHRDNIATLICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~~~~vaavi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ..+.+++.+++++.   +++||||+||+ ||++|+++||++||++|+++|++||++||+|||||||||+|+ +|+++++|
T Consensus       185 ~~~~~~~~~~~~~~---~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g  260 (422)
T PRK05630        185 EISEYLRSLELLID---ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE-LFATLAAG  260 (422)
T ss_pred             HHHHHHHHHHHHHh---hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch-hhHHHhcC
Confidence            23456777887775   57999999996 999999999999999999999999999999999999999998 89999999


Q ss_pred             CCCcEEEecccccCCc-ceeEEEecHHHHHhch----------h-------------------------hhhHHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNGM-PIGAVITSRKIAESLN----------C-------------------------LDDNRPSGKYL  194 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~----------~-------------------------l~~~~~~~~~l  194 (284)
                      +.|||+|+||+++||+ |+|++++++++++.+.          .                         ++++++++++|
T Consensus       261 v~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l  340 (422)
T PRK05630        261 VTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAEL  340 (422)
T ss_pred             CCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            9999999999999995 9999999999987652          0                         35888999999


Q ss_pred             HHHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        195 VRPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       195 ~~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      ++.|+.+           .|+|+++++. +...+..+.+.|+++||++.+.   ++++||.||+++|++|||+++++|++
T Consensus       341 ~~~L~~l~~~~~v~~vRg~Gl~~~ie~~-~~~~~~~~~~~~~~~Gl~~~~~---g~~l~~~PpL~it~~~i~~~~~~l~~  416 (422)
T PRK05630        341 IAGLSPLAHLPGVADVRVLGAIGVVEME-QPVDMEEATQAAVDHGVWLRPF---GRLVYVMPPYITTSEQIAQICAALAA  416 (422)
T ss_pred             HHHHHHhhcCCCeeeeeccccEEEEEEC-CcccHHHHHHHHHHCCeEEEec---CCEEEEECCccCCHHHHHHHHHHHHH
Confidence            9988764           5999999995 2223568889999999999864   48999999999999999999999999


Q ss_pred             HHHH
Q psy11784        264 IFTS  267 (284)
Q Consensus       264 ~l~~  267 (284)
                      ++++
T Consensus       417 al~~  420 (422)
T PRK05630        417 AVKA  420 (422)
T ss_pred             HHhc
Confidence            9864

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3e-50  Score=376.85  Aligned_cols=267  Identities=28%  Similarity=0.435  Sum_probs=224.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--ccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||||+|||+||+||||++|++|.++|||+|.+++++++..  .+...+....+.++|+|+.++.++.....+....+++
T Consensus       111 sEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (443)
T PRK08360        111 SDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVE  190 (443)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHH
Confidence            69999999999999999999999999999999988876532  1111111334566788888776664433344445677


Q ss_pred             HHHHHHHh--cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         79 AARNIMEA--HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        79 ~l~~~i~~--~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .++++++.  ..+++||||+||+|+.+|.++++++|+++|+++|++||++||+||||+||||+|+ +|+++++++.||++
T Consensus       191 ~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~-~~a~~~~~~~pDii  269 (443)
T PRK08360        191 YIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK-WFAIEHFGVEPDII  269 (443)
T ss_pred             HHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-chhhhhcCCCCCEE
Confidence            78888864  2456999999999999999999999999999999999999999999999999998 78888899999999


Q ss_pred             EecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        157 TVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       157 ~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      |+||++++|+|+|++++++++++.+..                             ++++++++++|++.|+++      
T Consensus       270 tlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~  349 (443)
T PRK08360        270 TLGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHEL  349 (443)
T ss_pred             EecccccCCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999987743                             458889999999999875      


Q ss_pred             ------cCceeEEEEecc-------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSI-------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 ------~G~~~~i~~~~~-------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                            .|+|+++++..+       ...+..+++.|+++|+++.+.  .++++||.||+++|++|||+++++|+++++++
T Consensus       350 v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~  427 (443)
T PRK08360        350 IGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF--SGNVLRIQPPLTIEKEVLDEGLDILEEAIEDV  427 (443)
T ss_pred             eeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                  699999999622       134668899999999998753  36899999999999999999999999999988


Q ss_pred             hh
Q psy11784        269 QM  270 (284)
Q Consensus       269 ~~  270 (284)
                      .+
T Consensus       428 ~~  429 (443)
T PRK08360        428 EE  429 (443)
T ss_pred             Hh
Confidence            64

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=100.00  E-value=1.6e-50  Score=377.16  Aligned_cols=258  Identities=23%  Similarity=0.386  Sum_probs=216.0

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      |||||+|||+||+||||++||+|++||||+|.+++++++..  ++.. ...+..+.++|+|+.+++.       ....++
T Consensus       111 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~-------~~~~~~  183 (421)
T PRK09792        111 AEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGI-------STQDSL  183 (421)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccc-------cHHHHH
Confidence            79999999999999999999999999999999999886532  2221 2223334556777544321       112346


Q ss_pred             HHHHHHHHh--cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         78 QAARNIMEA--HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        78 ~~l~~~i~~--~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +.++++++.  ..+++||||+||+|+++|..++|++|+++|+++|++||++||+|||+|||||+|+ +|+++++++.||+
T Consensus       184 ~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~~~~pDi  262 (421)
T PRK09792        184 DAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGK-LFAMDHYADKPDL  262 (421)
T ss_pred             HHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHhcCCCCcE
Confidence            788888874  2456999999999999999999999999999999999999999999999999998 7899999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +|+||++++|+|+|++++++++++.+..                             +++++++++++++.|+++     
T Consensus       263 ~t~gK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p  342 (421)
T PRK09792        263 MTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVP  342 (421)
T ss_pred             EEeehhhcCCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999987643                             457888899999988876     


Q ss_pred             -------cCceeEEEEecc------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSI------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 -------~G~~~~i~~~~~------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                             .|+|+++++.+.      ......+++.|+++||++.+.+..++.|||.||+++|++||++++++|+++++
T Consensus       343 ~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        343 AIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             CcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence                   689999999622      13567899999999999986555579999999999999999999999999874

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=4.1e-49  Score=368.32  Aligned_cols=254  Identities=24%  Similarity=0.339  Sum_probs=211.4

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|||+||+|      |+|++||+|+++|||+|.+++++++......  .+......++|+|+      +    +.
T Consensus       112 seA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~------~----d~  181 (423)
T PRK05964        112 SVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPP------D----GY  181 (423)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCc------c----hh
Confidence            79999999999999      7899999999999999999998875432211  11222233444442      1    12


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcc-eecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEP-VFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ...+++.+++.++.+++++||||+|| +|+++|++++|++||++|+++|++||++||+|||||||||+|+ +|+++++++
T Consensus       182 ~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~~v  260 (423)
T PRK05964        182 EQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT-LFACEQAGV  260 (423)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc-hhHHHhcCC
Confidence            34457888888876667799999999 6999999999999999999999999999999999999999997 789999999


Q ss_pred             CCcEEEecccccCC-cceeEEEecHHHHHhch---------h--------------------------hhhHHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNG-MPIGAVITSRKIAESLN---------C--------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       152 ~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~---------~--------------------------l~~~~~~~~~l~  195 (284)
                      .||++++||+++|| +|+|++++++++++.+.         .                          ++++++++++++
T Consensus       261 ~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~  340 (423)
T PRK05964        261 SPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLA  340 (423)
T ss_pred             CCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999998 79999999999988652         0                          458888999999


Q ss_pred             HHHHhc-----------cCceeEEEEeccc--HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        196 RPLGIN-----------LHIFWCLILLSIT--YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       196 ~~L~~~-----------~G~~~~i~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      +.|+++           .|+|+++++....  .....+.+.|+++||++.+.   ++.+||+||+++|++|||+++++|+
T Consensus       341 ~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~---~~~lR~~p~l~~t~edId~~v~~l~  417 (423)
T PRK05964        341 EGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPL---GNTIYLMPPYIITAEELDRITDAIV  417 (423)
T ss_pred             HHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEec---CCEEEEeCCcccCHHHHHHHHHHHH
Confidence            998775           5788899885322  24678999999999999864   4799999999999999999999999


Q ss_pred             HHHHHH
Q psy11784        263 RIFTSL  268 (284)
Q Consensus       263 ~~l~~~  268 (284)
                      ++++++
T Consensus       418 ~al~~~  423 (423)
T PRK05964        418 EVADEL  423 (423)
T ss_pred             HHHhhC
Confidence            998763

>PRK08297 L-lysine aminotransferase; Provisional

Probab=100.00  E-value=5.4e-49  Score=368.43  Aligned_cols=258  Identities=25%  Similarity=0.386  Sum_probs=203.0

Q ss_pred             CcHHHHHHHHHHHcc-------C-----CccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcCCCCC
Q psy11784          1 SEANDLALQLARAYT-------G-----RQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYRGEFS   66 (284)
Q Consensus         1 seA~e~AlklAr~~~-------~-----r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~   66 (284)
                      |||||+|||+||+|+       |     |++||+|++||||+|++++++++... ... ....+.. .+|.|.. .+++.
T Consensus       120 sEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~  197 (443)
T PRK08297        120 ALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWP-RIDNPKL-RFPLP  197 (443)
T ss_pred             HHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCcc-ccCCCCC-CCCCc
Confidence            799999999999984       3     58899999999999999998875321 111 1111111 1333332 12221


Q ss_pred             C-C---chHHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc
Q psy11784         67 A-D---DPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH  142 (284)
Q Consensus        67 ~-~---~~~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~  142 (284)
                      . +   .......+++++++++..+++++||||+|||||++|+++||++||++|+++|++||++||+|||||||||+|+ 
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-  276 (443)
T PRK08297        198 GEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGT-  276 (443)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccch-
Confidence            1 1   1223345578888888877778999999999999999999999999999999999999999999999999998 


Q ss_pred             cccccccCCCCcEEEecccccCCcceeEEEecHHHHH----hch----h--------------------------hhhHH
Q psy11784        143 FWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE----SLN----C--------------------------LDDNR  188 (284)
Q Consensus       143 ~~a~~~~g~~pDiv~~sK~l~~G~p~gav~~~~~i~~----~~~----~--------------------------l~~~~  188 (284)
                      +|+++++|+.|||+|+||+++    ++++++++++.+    .+.    .                          +++++
T Consensus       277 ~~a~~~~gv~PDiv~~gK~l~----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~  352 (443)
T PRK08297        277 AWAYQQLGVRPDIVAFGKKTQ----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAA  352 (443)
T ss_pred             HHHHHhcCCCCCEEEeccccc----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            899999999999999999984    466666655432    121    0                          45899


Q ss_pred             HHHHHHHHHHHhc-------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHH
Q psy11784        189 PSGKYLVRPLGIN-------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       189 ~~~~~l~~~L~~~-------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id  255 (284)
                      +++++|+++|+++             .|+|+++++. +......+++.|+++||++.+.+  .+.+||+||+++|++|||
T Consensus       353 ~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~-~~~~~~~~~~~l~~~Gvl~~~~~--~~~lr~~P~l~~t~~eid  429 (443)
T PRK08297        353 RQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLP-TTADRDEVIRRLWEEGVLVLPCG--ERSIRFRPALTVTTEEID  429 (443)
T ss_pred             HHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEec-CHHHHHHHHHHHHHCCEEEecCC--CCeEEEECCccCCHHHHH
Confidence            9999999999875             6889999994 44456789999999999998743  478999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy11784        256 FIVSTLNRIFTSL  268 (284)
Q Consensus       256 ~~~~~l~~~l~~~  268 (284)
                      +++++|+++++++
T Consensus       430 ~~l~~l~~~l~~~  442 (443)
T PRK08297        430 AAIDALRRALPEV  442 (443)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999765

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=100.00  E-value=2.2e-49  Score=370.62  Aligned_cols=255  Identities=18%  Similarity=0.279  Sum_probs=199.1

Q ss_pred             CcHHHHHHHHHHHccC---------------------------CccEEEEcCCCcccchhhhcCCCCcc-cccCCCCCce
Q psy11784          1 SEANDLALQLARAYTG---------------------------RQNIVVVDAAYHGTVNLLLDISPRAF-MLSSEKKPWV   52 (284)
Q Consensus         1 seA~e~AlklAr~~~~---------------------------r~~il~~~~~yHG~t~~~~~~~~~~~-~~~~~~~~~~   52 (284)
                      |||||+|||+||+|++                           |.+||+|++||||+|.+++++++... ..........
T Consensus       132 sEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~  211 (464)
T TIGR00699       132 SDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDW  211 (464)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCc
Confidence            7999999999998832                           33899999999999999998876432 2111111223


Q ss_pred             EEccCCCCcCCCCC---CCchHHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEE
Q psy11784         53 HVIPFPDTYRGEFS---ADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIA  129 (284)
Q Consensus        53 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~  129 (284)
                      .++|+|+ ++++..   ...+.....+++.++++++++.+++||||+|||||++|+++++++||++|+++|++||++||+
T Consensus       212 ~~~p~p~-~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~  290 (464)
T TIGR00699       212 PQAPFPS-LKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIV  290 (464)
T ss_pred             eecCCCC-cccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence            4567775 333321   111233455688899999866667999999999999999999999999999999999999999


Q ss_pred             ecccccCccccCccccccccCCC--CcEEEeccccc-CCcceeEEEecHHHHHh---------chh--------------
Q psy11784        130 DEIQCGMGRSGSHFWAFQTQGAV--PDIITVGKPMG-NGMPIGAVITSRKIAES---------LNC--------------  183 (284)
Q Consensus       130 DEv~tG~gr~G~~~~a~~~~g~~--pDiv~~sK~l~-~G~p~gav~~~~~i~~~---------~~~--------------  183 (284)
                      |||||||||+|. +|+++++|+.  |||+|+||+++ ||++++    ++ .+..         +..              
T Consensus       291 DEV~tGfGrtG~-~fa~e~~gv~~~PDi~t~gK~lg~gG~~~~----~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~  364 (464)
T TIGR00699       291 DEVQTGVGATGK-FWAHEHWNLDDPPDMVTFSKKFQTAGYFFH----DP-AFRPNKPYRQFNTWMGDPSRALILREIIQE  364 (464)
T ss_pred             eeeeeCCCCCcc-hhHHHhcCCCCCCCEEEehhhhccCCcccc----ch-hccCCCCcccccCCCCCHHHHHHHHHHHHH
Confidence            999999999998 8999999997  99999999996 575432    11 1110         000              


Q ss_pred             ------hhhHHHHHHHHHHHHHhc---------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEE
Q psy11784        184 ------LDDNRPSGKYLVRPLGIN---------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLL  242 (284)
Q Consensus       184 ------l~~~~~~~~~l~~~L~~~---------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr  242 (284)
                            ++++++++++|+++|+++               .|+|+++++ ++...+..+.+.++++|+++.+.+  .++||
T Consensus       365 l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~-~~~~~~~~i~~~~~~~Gvl~~~~g--~~~ir  441 (464)
T TIGR00699       365 IKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDT-PDEAKRDKLLKKARNNGVNIGGCG--VKAIR  441 (464)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEec-CCHHHHHHHHHHHHHCCcEEecCC--CCeEE
Confidence                  458889999999999765               466788887 344457889999999999998642  48999


Q ss_pred             EEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        243 FLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       243 ~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      |.||+++|++|||+++++|++++
T Consensus       442 ~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       442 LRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999998764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=3.1e-49  Score=369.23  Aligned_cols=252  Identities=24%  Similarity=0.331  Sum_probs=203.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccc-ccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFM-LSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |||||+|+|+||+||||++||+|+++|||+|.++++.++.... ........+...+.|+.++.++++         .+.
T Consensus       119 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~~  189 (428)
T PRK12389        119 TEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFND---------IEA  189 (428)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCC---------HHH
Confidence            6999999999999999999999999999999999988653211 100000111101224445555654         677


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      +++.++.+++++||||+||+||++|+++||++||++|+++|++||++||+||||||| |+|. +|+++++|+.|||+|+|
T Consensus       190 l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~-~~a~~~~gv~PDivt~g  267 (428)
T PRK12389        190 LKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMY-GGAQDLLGVEPDLTALG  267 (428)
T ss_pred             HHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCc-chhhHHhCCCCCeeeec
Confidence            888887666679999999999999999999999999999999999999999999999 9986 67888999999999999


Q ss_pred             ccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      |+++||+|+|++++++++++.+..                                ++++++++++|+++|+++      
T Consensus       268 K~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~  347 (428)
T PRK12389        268 KIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGI  347 (428)
T ss_pred             hhhcCCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999987731                                458999999999999874      


Q ss_pred             ------cCceeEEEEecc------------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSI------------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 ------~G~~~~i~~~~~------------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                            .+.++++++..+            ......+.+.|+++||++.+.+  .+.  +.||+++|++|||++++++++
T Consensus       348 ~~~v~r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~--~~~~l~~t~e~id~~~~~l~~  423 (428)
T PRK12389        348 TITINRLKGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSK--YEA--WFLTTAHTEEDIEETLEAVDR  423 (428)
T ss_pred             CEEEEecCcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCC--CCC--eeecCCCCHHHHHHHHHHHHH
Confidence                  123667877521            1235678899999999998753  233  468999999999999999999


Q ss_pred             HHHH
Q psy11784        264 IFTS  267 (284)
Q Consensus       264 ~l~~  267 (284)
                      ++++
T Consensus       424 ~l~~  427 (428)
T PRK12389        424 AFAQ  427 (428)
T ss_pred             HHHh
Confidence            9865

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=2.1e-48  Score=361.13  Aligned_cols=248  Identities=24%  Similarity=0.396  Sum_probs=207.3

Q ss_pred             CcHHHHHHHHHHHcc---C----CccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCchH
Q psy11784          1 SEANDLALQLARAYT---G----RQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~~---~----r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (284)
                      |||||+|||+||+|+   |    |++||+|++||||+|.+++++++..... . ...+..+.++|        +++    
T Consensus       108 seA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~--------~~d----  175 (408)
T PRK04612        108 TEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVD--------FND----  175 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcC--------CCC----
Confidence            699999999999994   3    6789999999999999999887543211 1 11112222233        332    


Q ss_pred             HHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         72 AAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                           .+.+++.++  .++++|||+||+|+.||+++++++|+++|+++|++||++||+|||||||||+|+ +|+.+++++
T Consensus       176 -----~~~l~~~~~--~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~a~~~~~~  247 (408)
T PRK04612        176 -----VEALEAAMA--GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGT-LFAHWQEQV  247 (408)
T ss_pred             -----HHHHHHhhC--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-hhhhhhcCC
Confidence                 567777774  456999999999999999999999999999999999999999999999999997 788888899


Q ss_pred             CCcEEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        152 VPDIITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       152 ~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      .||++|+||++++|+|+|++++++++++.+..                             .+++++++++|+++|+++ 
T Consensus       248 ~pdi~t~~K~l~~G~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~  327 (408)
T PRK04612        248 TPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALN  327 (408)
T ss_pred             CCCEEEEcchhcCCCceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998876543                             447889999999999886 


Q ss_pred             -----------cCceeEEEEecc-cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        202 -----------LHIFWCLILLSI-TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       202 -----------~G~~~~i~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                                 .|+|+++++.+. ...+..+++.|+++||++.+.+  .+++|+.||+++|++|||+++++|+++++++.
T Consensus       328 ~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~g--~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~  405 (408)
T PRK04612        328 AEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQAG--PDVLRFVPALNLTDAELADGLARLRLALADYV  405 (408)
T ss_pred             hhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeCC--CCEEEEcCCccCCHHHHHHHHHHHHHHHHHHh
Confidence                       699999999632 3456789999999999998643  48999999999999999999999999998764


Q ss_pred             h
Q psy11784        270 M  270 (284)
Q Consensus       270 ~  270 (284)
                      .
T Consensus       406 ~  406 (408)
T PRK04612        406 A  406 (408)
T ss_pred             h
Confidence            3

>KOG1403|consensus

Probab=100.00  E-value=1.4e-49  Score=339.03  Aligned_cols=273  Identities=37%  Similarity=0.645  Sum_probs=244.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCch---HHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDP---QAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   75 (284)
                      ||||+.|+||||.||+++.+|+++.+|||+....+-+|++++..+  ...++++|..|.|+.||+.|.++..   +....
T Consensus       112 SEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~  191 (452)
T KOG1403|consen  112 SEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGAL  191 (452)
T ss_pred             chhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhh
Confidence            799999999999999999999999999999999999999998886  3457999999999999998876432   23457


Q ss_pred             HHHHHHHHHH---hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         76 YAQAARNIME---AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        76 ~~~~l~~~i~---~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                      |.+.++++++   ..+.++||+|.|..|+-||.+.||++|++.+.+..+.+|-+.|.||||+||||.|+++|+++.|++.
T Consensus       192 Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fi  271 (452)
T KOG1403|consen  192 YADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFI  271 (452)
T ss_pred             hhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccc
Confidence            7888888887   2344599999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecccccCCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        153 PDIITVGKPMGNGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       153 pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      |||+|++|.+|+|.|+++++.++++.++|..                               .++..++|++|...|+++
T Consensus       272 PDIVtmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~  351 (452)
T KOG1403|consen  272 PDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRL  351 (452)
T ss_pred             cchheecccCCCCCeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998865                               347888899999988877


Q ss_pred             ------------cCceeEEEEe-------cccHHHHHHHHHHHH-CCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        202 ------------LHIFWCLILL-------SITYYLYRYTRRMKE-AKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       202 ------------~G~~~~i~~~-------~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                                  .|+|++|+++       |+...+..++.+|++ +||++...+|..|.|.|.||++.+++++++++..|
T Consensus       352 k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~l  431 (452)
T KOG1403|consen  352 KQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGL  431 (452)
T ss_pred             hhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHH
Confidence                        7999999998       556677788888986 58999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccc
Q psy11784        262 NRIFTSLQMDSS  273 (284)
Q Consensus       262 ~~~l~~~~~~~~  273 (284)
                      +++|.-+.+...
T Consensus       432 d~iLT~mee~~~  443 (452)
T KOG1403|consen  432 DEILTVMEERLA  443 (452)
T ss_pred             HHHHHHHHHHHh
Confidence            999987765443

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=100.00  E-value=1.5e-48  Score=366.78  Aligned_cols=253  Identities=26%  Similarity=0.378  Sum_probs=200.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcc-cccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF-MLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |||||+|||+||+||||++||+|+|+|||++++....+.... .............+.++.+..+|++         ++.
T Consensus       165 sEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd---------~~~  235 (474)
T PLN02482        165 TEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYND---------LEA  235 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCC---------hHH
Confidence            699999999999999999999999999999865443321110 0000001111111123444556664         678


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      ++++++.+++++||||+||+||++|+++|+++||++|+++|++||++||+||||||| |+|. +|+++++|+.||++|+|
T Consensus       236 l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~-~ga~~~~gv~PDi~t~g  313 (474)
T PLN02482        236 VKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY-GGAQEYFGITPDLTTLG  313 (474)
T ss_pred             HHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc-chHhHHhCCCCCEEEec
Confidence            888887666779999999999999999999999999999999999999999999999 9997 78999999999999999


Q ss_pred             ccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      |+++||+|+|++++++++++.+..                                ++++++++++|+++|+++      
T Consensus       314 K~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~  393 (474)
T PLN02482        314 KVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGH  393 (474)
T ss_pred             chhhCCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999987641                                458889999999999876      


Q ss_pred             ------cCceeEEEEec------------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLS------------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 ------~G~~~~i~~~~------------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                            .+.|+++++..            +......+.+.|+++||++.+.++..   + .||++||++|||++++++++
T Consensus       394 ~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~---~-~psl~ht~~dId~~l~al~~  469 (474)
T PLN02482        394 EMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEA---G-FTSLAHTEEDIDFTIAAAER  469 (474)
T ss_pred             CEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCC---C-cCCCCCCHHHHHHHHHHHHH
Confidence                  13356776641            11235678899999999998753311   1 49999999999999999999


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      +++++
T Consensus       470 ~l~~~  474 (474)
T PLN02482        470 VLARI  474 (474)
T ss_pred             HHHhC
Confidence            98753

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=9.9e-49  Score=353.56  Aligned_cols=250  Identities=26%  Similarity=0.323  Sum_probs=203.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccc---cc--CCCCCceEEccCCCCcCCCCCCCchHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFM---LS--SEKKPWVHVIPFPDTYRGEFSADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
                      |||+..|||+||.||||++|+.|+|+|||++++++.-.++...   .+  ++.+..    ...+....+||+        
T Consensus       119 TEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~----~a~~ti~~~yND--------  186 (432)
T COG0001         119 TEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPAD----VAKHTLVLPYND--------  186 (432)
T ss_pred             hHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChh----hhccEEEecCCC--------
Confidence            7999999999999999999999999999999887743221111   01  222211    011222345665        


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         76 YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        76 ~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                       ++.+++++++.+++|||||+|||+|+.|.++|.++||+.|+++|++||++||+|||+||| |... .+++.+||++||+
T Consensus       187 -~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGF-R~~~-gGaq~~~gi~PDl  263 (432)
T COG0001         187 -LEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVAL-GGAQGYYGVEPDL  263 (432)
T ss_pred             -HHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhc-ccCC-cccccccCcCcch
Confidence             899999999888899999999999999999999999999999999999999999999999 7775 5788999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      .||||.+|||+|+|++.+++++|+.+..                                 .+++.+.+++|++.|++. 
T Consensus       264 ttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~  343 (432)
T COG0001         264 TTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAA  343 (432)
T ss_pred             hhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999997655                                 347888899999999887 


Q ss_pred             -----------cCceeEEEEec------------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHH
Q psy11784        202 -----------LHIFWCLILLS------------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       202 -----------~G~~~~i~~~~------------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~  258 (284)
                                 .|.|+.+.+..            +.+...++.+.|+++||++.|....    ....+..||+++||+.+
T Consensus       344 ~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~e----a~flS~ahte~di~~~~  419 (432)
T COG0001         344 ERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFE----AGFLSTAHTEEDIDRTL  419 (432)
T ss_pred             HHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCcccc----ceeeecccCHHHHHHHH
Confidence                       67788877762            1223456777999999999975321    23447899999999999


Q ss_pred             HHHHHHHHHHh
Q psy11784        259 STLNRIFTSLQ  269 (284)
Q Consensus       259 ~~l~~~l~~~~  269 (284)
                      ++++++++++.
T Consensus       420 ~a~~~~~~~~~  430 (432)
T COG0001         420 EAADEAFKELA  430 (432)
T ss_pred             HHHHHHHHHhh
Confidence            99999998874

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=2.1e-48  Score=382.78  Aligned_cols=261  Identities=21%  Similarity=0.260  Sum_probs=201.9

Q ss_pred             CcHHHHHHHHHHH-cc------------------CCccEEEEcCCCcccchhhhcCCCCc-cccc--CC-CCCceEEccC
Q psy11784          1 SEANDLALQLARA-YT------------------GRQNIVVVDAAYHGTVNLLLDISPRA-FMLS--SE-KKPWVHVIPF   57 (284)
Q Consensus         1 seA~e~AlklAr~-~~------------------~r~~il~~~~~yHG~t~~~~~~~~~~-~~~~--~~-~~~~~~~~~~   57 (284)
                      |||||+||||||+ |+                  +|.+||+|+|||||.|.+++++++.. ++..  .. ......+++.
T Consensus       437 SeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~  516 (817)
T PLN02974        437 STAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDP  516 (817)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCC
Confidence            7999999999964 62                  48899999999999999999987532 2111  11 1112223333


Q ss_pred             CCCc-CC-------CCC--C--------------------CchHHHHHHHHHHHHHHHh-----cCCCeeEEEEcce-ec
Q psy11784         58 PDTY-RG-------EFS--A--------------------DDPQAAQKYAQAARNIMEA-----HRDNIATLICEPV-FV  101 (284)
Q Consensus        58 ~~~~-~~-------~~~--~--------------------~~~~~~~~~~~~l~~~i~~-----~~~~vaavi~Epv-~~  101 (284)
                      |..+ +.       ++.  +                    +.++....|++.+++.|+.     .++++||||+||+ ||
T Consensus       517 P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqG  596 (817)
T PLN02974        517 PTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHG  596 (817)
T ss_pred             CccccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccC
Confidence            4321 10       000  0                    1223455677888888863     2356999999995 99


Q ss_pred             CCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecccccCC-cceeEEEecHHHHHh
Q psy11784        102 VHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIAES  180 (284)
Q Consensus       102 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~  180 (284)
                      .||+++++++|+++|+++|++||++||+|||+|||||+|+ +|+++++|+.|||+|+||+|+|| +|+|++++++++++.
T Consensus       597 aGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~-~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~  675 (817)
T PLN02974        597 AGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV-ESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEA  675 (817)
T ss_pred             CCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccc-hhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHh
Confidence            9999999999999999999999999999999999999998 89999999999999999999999 599999999999997


Q ss_pred             chh---------------------------------------hhhHHHHHHHHHHHHH-hc-----------cCceeEEE
Q psy11784        181 LNC---------------------------------------LDDNRPSGKYLVRPLG-IN-----------LHIFWCLI  209 (284)
Q Consensus       181 ~~~---------------------------------------l~~~~~~~~~l~~~L~-~~-----------~G~~~~i~  209 (284)
                      +..                                       .++.+++++++.+.|. .+           .|+|++++
T Consensus       676 f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~ie  755 (817)
T PLN02974        676 FRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALE  755 (817)
T ss_pred             hccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEE
Confidence            731                                       1134445555666662 22           89999999


Q ss_pred             Eecc-------cHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        210 LLSI-------TYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       210 ~~~~-------~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      ++.+       ...+..+.+.++ ++||++++.   +++|++.||+.+++++++++++++.+.+
T Consensus       756 l~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~---Gnvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        756 LDAEGSGSGYSSLYARSVVRRLRREDGIYARPL---GNVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             EecCCcccccchHHHHHHHHHHHHhCCEEEEec---CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9732       123567888899 999999864   5899999999999999999999998765

>KOG1401|consensus

Probab=100.00  E-value=9.3e-49  Score=346.55  Aligned_cols=247  Identities=28%  Similarity=0.478  Sum_probs=199.8

Q ss_pred             CcHHHHHHHHHHHccCC------ccEEEEcCCCcccchhhhcCCCCc-cccc-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAYTGR------QNIVVVDAAYHGTVNLLLDISPRA-FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~~~r------~~il~~~~~yHG~t~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||.|||+||+++.+      .+||.|+|||||+|.++++++++. ++.+ ++        -.|+...+.+++     
T Consensus       126 TeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p--------~~p~v~~~~ynd-----  192 (433)
T KOG1401|consen  126 TEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDP--------IAPDVVTAEYND-----  192 (433)
T ss_pred             cHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCC--------CCCceeecccCC-----
Confidence            79999999999999754      459999999999999999987442 2221 11        124444455565     


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                          ..+++++++.+.++|||||+||+||+||..+++++||..|+.+|+++|++||+|||||||||+|. .|++++++++
T Consensus       193 ----~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~-~~a~e~~~~~  267 (433)
T KOG1401|consen  193 ----STALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGY-GWAQEYFGVT  267 (433)
T ss_pred             ----HHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccch-HHHHHHhCcC
Confidence                78999999988888999999999999999999999999999999999999999999999999998 8999999999


Q ss_pred             CcEEEecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        153 PDIITVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       153 pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      |||.|++|.|+||+|+||+++++++++.+..                                ++++.+.++.|++.|.+
T Consensus       268 PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e  347 (433)
T KOG1401|consen  268 PDITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDE  347 (433)
T ss_pred             CcceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998865                                55889999999999987


Q ss_pred             c-------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEc--CCCCC--HHHHHHHHHHH
Q psy11784        201 N-------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLP--AMCLT--TENVLFIVSTL  261 (284)
Q Consensus       201 ~-------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p--~l~~t--~~~id~~~~~l  261 (284)
                      .             .|+++++++.   ....++.....+.|.+..+.+.  -...+|+.|  ++++.  +|.++++++++
T Consensus       348 ~~~~~~~~i~g~~grgl~ig~~~~---~p~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i~  424 (433)
T KOG1401|consen  348 YLKKTPNSICGGVGRGLVIGFEFE---GPVYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTIL  424 (433)
T ss_pred             HhccCCCceeeeeeeEEEEEEEEe---echhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccCcHHHHHHHHHHH
Confidence            6             5677777765   1233344444444444433211  013577777  55554  99999999999


Q ss_pred             HHHHHHH
Q psy11784        262 NRIFTSL  268 (284)
Q Consensus       262 ~~~l~~~  268 (284)
                      .+.++++
T Consensus       425 ~~~l~~~  431 (433)
T KOG1401|consen  425 EKVLSAL  431 (433)
T ss_pred             HHHHHHh
Confidence            9998876

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=100.00  E-value=2.6e-48  Score=354.66  Aligned_cols=238  Identities=24%  Similarity=0.450  Sum_probs=191.2

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||+|+|+|+||.|+||++||+|+++|||+|.+++++++......  ......+.++|+        ++         .+
T Consensus        91 seA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~--------~d---------~~  153 (364)
T PRK04013         91 TEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF--------ND---------VE  153 (364)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC--------CC---------HH
Confidence            699999999999999999999999999999999998875432211  111112222333        22         45


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      .+++.+.   +++||||+||+||++|++++|++||++|+++|++||++||+||||||| |+|+ +|+++++++.|||+|+
T Consensus       154 ~l~~~i~---~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~-~~a~~~~gv~PDiv~~  228 (364)
T PRK04013        154 AAKEAIT---KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYKVEPDIVTM  228 (364)
T ss_pred             HHHHHhc---CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCc-hhHHHhcCCCCCEEEe
Confidence            6676664   579999999999999999999999999999999999999999999999 9998 8999999999999999


Q ss_pred             cccccCCcceeEEEecHHHHHhchh-------------------------hhhHHHHHHHHHHHHH-h----c--cCcee
Q psy11784        159 GKPMGNGMPIGAVITSRKIAESLNC-------------------------LDDNRPSGKYLVRPLG-I----N--LHIFW  206 (284)
Q Consensus       159 sK~l~~G~p~gav~~~~~i~~~~~~-------------------------l~~~~~~~~~l~~~L~-~----~--~G~~~  206 (284)
                      ||+++||+|+|+++.++++......                         +++++++   +. .+. .    .  .|+|+
T Consensus       229 gK~lggG~P~~a~~~~~~~~~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~---l~-~l~~~~v~~vRG~Gl~~  304 (364)
T PRK04013        229 GKGIGNGVPVSLTLTNFDVERGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK---FI-EIKGERVVTTRGRGLMI  304 (364)
T ss_pred             cccccCCceeEEEEecccccCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH---HH-HhccCcceeeeeCcEEE
Confidence            9999999999999999876322111                         2233322   21 221 1    1  89999


Q ss_pred             EEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        207 CLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       207 ~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      ++++..   .+..+.+.++++|+++.+.+  .+++||.||+++|++|+|+++++|+++++++.
T Consensus       305 gve~~~---~~~~i~~~~~~~Gll~~~~g--~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~  362 (364)
T PRK04013        305 GIVLKK---PVGKYVEELQNRGYLVHTAG--QRVIRLLPPLIISKDTMEEAKSAIEGVINDIL  362 (364)
T ss_pred             EEEeCC---cHHHHHHHHHhCCcEEeeCC--CCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence            999962   24678899999999998643  48999999999999999999999999998754

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=100.00  E-value=7.6e-48  Score=357.09  Aligned_cols=245  Identities=24%  Similarity=0.427  Sum_probs=205.7

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|+|+||+||      +|.+||+++++|||+|.+++++++..... . ...+..+.++        +|++     
T Consensus       102 seA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~d-----  168 (397)
T TIGR03246       102 AEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHA--------PYND-----  168 (397)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEe--------CCCC-----
Confidence            699999999999995      89999999999999999888876532111 0 1112222222        3333     


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                          ++++++.+.   +++++||+||+++++|.++|+++||++|+++|++||++||+|||||||||+|+ +|+++++|+.
T Consensus       169 ----~~~l~~~l~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~-~~a~~~~gv~  240 (397)
T TIGR03246       169 ----LAAAKALIS---DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVT  240 (397)
T ss_pred             ----HHHHHHHhc---cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc-chhhhhcCCC
Confidence                677888775   46999999999999999999999999999999999999999999999999998 7888999999


Q ss_pred             CcEEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        153 PDIITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       153 pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      ||++|+||+++||+|+|++++++++++.+..                             ++++++++++++++|+++  
T Consensus       241 pDi~t~~K~lggG~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~  320 (397)
T TIGR03246       241 PDILTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINA  320 (397)
T ss_pred             CCEEEeehhhhCCcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999887643                             458889999999999875  


Q ss_pred             ----------cCceeEEEEecc-cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 ----------LHIFWCLILLSI-TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 ----------~G~~~~i~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                                .|+++++++.+. ......+++.|+++|+++.+.+  .+++|+.||+++|++|||+++++|+++++++
T Consensus       321 ~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~g--~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~  396 (397)
T TIGR03246       321 RYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAG--PNVVRFAPSLVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             cCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeecC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                      577888887532 2457789999999999998643  4799999999999999999999999998764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PLN00144 acetylornithine transaminase

Probab=100.00  E-value=1.1e-47  Score=353.90  Aligned_cols=244  Identities=26%  Similarity=0.482  Sum_probs=205.1

Q ss_pred             CcHHHHHHHHHHHccC-------------CccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCC
Q psy11784          1 SEANDLALQLARAYTG-------------RQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEF   65 (284)
Q Consensus         1 seA~e~AlklAr~~~~-------------r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~   65 (284)
                      |||||+|+|+||.||+             |++||+|+++|||+|.+++++++..... . ......+.++|+        
T Consensus        82 seA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~--------  153 (382)
T PLN00144         82 TEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY--------  153 (382)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC--------
Confidence            7999999999999986             5789999999999999999887643211 1 111112223333        


Q ss_pred             CCCchHHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc
Q psy11784         66 SADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA  145 (284)
Q Consensus        66 ~~~~~~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a  145 (284)
                      ++         .+.+++.++  .++++|||+||+|+.+|..+++++|+++|+++|++||++||+|||||||||+|+ +|+
T Consensus       154 ~d---------~~~l~~~~~--~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~-~~~  221 (382)
T PLN00144        154 GN---------LEAARKLIQ--KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGY-LWA  221 (382)
T ss_pred             CC---------HHHHHHhcC--CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-Hhh
Confidence            32         577777774  356999999999999999999999999999999999999999999999999998 788


Q ss_pred             ccccCCCCcEEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHH
Q psy11784        146 FQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       146 ~~~~g~~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~  196 (284)
                      ++++++.||++||||++++|+|+|++++++++++.+..                             .++++++++++++
T Consensus       222 ~~~~~~~PDi~t~sK~l~~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~  301 (382)
T PLN00144        222 HEAYGVEPDIMTLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRE  301 (382)
T ss_pred             hhhcCCCCCEEEecccccCCcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999987753                             3478888999888


Q ss_pred             HHHhc------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        197 PLGIN------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       197 ~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      .|+++            .|+|+++++.   .....+++.++++||++.+.+. ++.|||.||+++|++++++++++|+++
T Consensus       302 ~l~~~~~~~~~~~~vrg~G~~~~l~l~---~~~~~~~~~~~~~Gv~i~~~~~-~~~lrl~p~~~~~~~~i~~~~~~l~~~  377 (382)
T PLN00144        302 LLRRKLGGNPHVKEVRGVGLLVGIQLD---VPAGPLVDACRDSGLLVLTAGK-GDVVRLVPPLVISEAELEQAVEILADC  377 (382)
T ss_pred             HHHHHHhhCCCceeeecCceEEEEEec---CccHHHHHHHHHCCeEEeecCC-CCEEEEeCCCccCHHHHHHHHHHHHHH
Confidence            88764            7889999983   2346789999999999988643 589999999999999999999999999


Q ss_pred             HHHH
Q psy11784        265 FTSL  268 (284)
Q Consensus       265 l~~~  268 (284)
                      ++++
T Consensus       378 l~~~  381 (382)
T PLN00144        378 LPAL  381 (382)
T ss_pred             HHhc
Confidence            8764

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=1.3e-47  Score=354.69  Aligned_cols=244  Identities=25%  Similarity=0.417  Sum_probs=197.7

Q ss_pred             CcHHHHHHHHHHHcc-----CCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCC-CCcCCCCCCCchHHHH
Q psy11784          1 SEANDLALQLARAYT-----GRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFP-DTYRGEFSADDPQAAQ   74 (284)
Q Consensus         1 seA~e~AlklAr~~~-----~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   74 (284)
                      |||||+|+|+||+|+     +|.+||+|+++|||+|.+++++++...... .      +.|.+ .....++++       
T Consensus       103 seA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~-~------~~~~~~~~~~~~~~d-------  168 (395)
T PRK03715        103 AEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDT-I------FAPQVPGFPKAELND-------  168 (395)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCccccc-C------CCCCCCCceeeCCch-------
Confidence            699999999999984     678999999999999999988875431110 0      01111 111112232       


Q ss_pred             HHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         75 KYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        75 ~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                        ++.+++.+.   +++++||+||+||++|+++||++||++|+++|++||++||+|||||||||+|+ +|+++++|+.||
T Consensus       169 --~~~l~~~l~---~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~-~~a~~~~gv~PD  242 (395)
T PRK03715        169 --IASVEKLIT---DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT-LFAYELSGIEPD  242 (395)
T ss_pred             --HHHHHHHcC---CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcc-hhhHhhcCCCCc
Confidence              567777774   46999999999999999999999999999999999999999999999999998 889999999999


Q ss_pred             EEEecccccCCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        155 IITVGKPMGNGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       155 iv~~sK~l~~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      |+|+||+++||+|+|+++++++++.....                            ++++++++++|+++|+++     
T Consensus       243 i~t~gK~lg~G~p~~av~~~~~i~~~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~  322 (395)
T PRK03715        243 IMTLGKGIGGGVPLAALLAKAEVAVFEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERG  322 (395)
T ss_pred             eeeehhhhhCCcceEEEEEccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999998632111                            458889999999999865     


Q ss_pred             ------cCceeEEEEecccHHHHHHHHHHHHC---CcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSITYYLYRYTRRMKEA---KIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 ------~G~~~~i~~~~~~~~~~~~~~~l~~~---Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                            .|+|+++++..+  ....+.+.+++.   |+++.+.  .+++|||.||+++|++|||+++++|+++++++
T Consensus       323 i~~vrG~Glm~~i~l~~~--~~~~~~~~~~~~~~~Gi~~~~~--~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        323 LEGERGEGLLRALLLGKD--IGPQIVEKARDMQPDGLLLNAP--RPNLLRFMPALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             cCeEEcceeEEEEEecCc--hHHHHHHHHHhccCCCEEEeec--CCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence                  689999999521  234455555555   9999754  35899999999999999999999999998765

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=4.3e-47  Score=354.39  Aligned_cols=256  Identities=24%  Similarity=0.364  Sum_probs=209.1

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCcc--ccc-CCCCCceEEccCCCCcCCCCCCCchH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAF--MLS-SEKKPWVHVIPFPDTYRGEFSADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (284)
                      |||||+|+|+||.|+      +|.+||+|+++|||+|.+++++++...  ... .+..+...+.|.|...   +..   +
T Consensus       115 seA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~---~  188 (427)
T TIGR00508       115 SVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNR---FDE---E  188 (427)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCcc---ccc---h
Confidence            699999999999985      688999999999999999998875421  110 1112222334555431   110   1


Q ss_pred             HHHHHHHHHHHHHHhcCCCeeEEEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAHRDNIATLICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~~~~vaavi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....++++++++++++.+++||||+||+ |++||.++++++||++|+++|++||++||+|||||||||+|+ +|++++++
T Consensus       189 ~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~-~~~~~~~~  267 (427)
T TIGR00508       189 WNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK-LFACEHAG  267 (427)
T ss_pred             hHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-cchhhhcC
Confidence            1122367788888766667999999998 999999999999999999999999999999999999999998 78999999


Q ss_pred             CCCcEEEecccccCCc-ceeEEEecHHHHHhchh----------------------------------hhhHHHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNGM-PIGAVITSRKIAESLNC----------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~~----------------------------------l~~~~~~~~~l~  195 (284)
                      +.|||+|+||+++||+ |++++++++++++.+..                                  ++++++++++|+
T Consensus       268 v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~  347 (427)
T TIGR00508       268 VVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLK  347 (427)
T ss_pred             CCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999999999995 99999999999876531                                  458889999999


Q ss_pred             HHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        196 RPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       196 ~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      ++|+++           .|+++++++. +......+.+.|+++||++.+.   ++.+|+.||+++|++|||+++++|+++
T Consensus       348 ~~L~~l~~~~~i~~vrg~G~~~~i~~~-~~~~~~~~~~~l~~~Gv~~~~~---~~~l~~~ppl~~t~~~id~~~~~l~~~  423 (427)
T TIGR00508       348 RELSPLRKNPVVKDVRVLGAIGVVEMY-KPVNVEELQKKFVEQGVWIRPF---GKLIYVMPPYIITTEQLQKLTAALIEA  423 (427)
T ss_pred             HHHHHhhcCCCEEeEeccccEEEEEEC-CccCHHHHHHHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            999876           4889999985 3334678999999999999864   468999999999999999999999999


Q ss_pred             HHH
Q psy11784        265 FTS  267 (284)
Q Consensus       265 l~~  267 (284)
                      +++
T Consensus       424 l~~  426 (427)
T TIGR00508       424 LHE  426 (427)
T ss_pred             Hhc
Confidence            854

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=100.00  E-value=3.6e-47  Score=355.42  Aligned_cols=254  Identities=22%  Similarity=0.338  Sum_probs=197.9

Q ss_pred             CcHHHHHHHHHHHccC------------CccEEEEcCCCcccchhhhcCCCCc-cccc-CCCCCceEEccCCCCcCCCCC
Q psy11784          1 SEANDLALQLARAYTG------------RQNIVVVDAAYHGTVNLLLDISPRA-FMLS-SEKKPWVHVIPFPDTYRGEFS   66 (284)
Q Consensus         1 seA~e~AlklAr~~~~------------r~~il~~~~~yHG~t~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~   66 (284)
                      |||||+|||+||+||+            |++||+|++||||+|.+++++++.. .... .+..+.. +++.|+. +++++
T Consensus       113 sEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~-~~~~p~~-~~~~~  190 (431)
T TIGR03251       113 ALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWP-RIDNPKL-TFPLD  190 (431)
T ss_pred             HHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCc-cCCCCcc-cCCcc
Confidence            7999999999999973            4789999999999999999887642 2111 1111111 2334433 22222


Q ss_pred             CC----chHHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc
Q psy11784         67 AD----DPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH  142 (284)
Q Consensus        67 ~~----~~~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~  142 (284)
                      .+    .......+++++++.++.+++++||||+|||||++|++++|++||++|+++|++||++||+|||||||||+|+ 
T Consensus       191 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-  269 (431)
T TIGR03251       191 APNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT-  269 (431)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccch-
Confidence            11    1223345678888888866677999999999999999999999999999999999999999999999999998 


Q ss_pred             cccccccCCCCcEEEecccccCCcceeEEEecHHH---HH-hch------h------------------------hhhHH
Q psy11784        143 FWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI---AE-SLN------C------------------------LDDNR  188 (284)
Q Consensus       143 ~~a~~~~g~~pDiv~~sK~l~~G~p~gav~~~~~i---~~-~~~------~------------------------l~~~~  188 (284)
                      +|+++++|+.||++|+||++    |+++++.++++   ++ .+.      .                        +++++
T Consensus       270 ~~a~~~~gv~PDi~~~gK~~----~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~  345 (431)
T TIGR03251       270 AWAYQQLGVQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNAR  345 (431)
T ss_pred             HHHHHhcCCCCCEEEecccC----ccceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            88999999999999999997    45566665543   22 111      0                        35888


Q ss_pred             HHHHHHHHHHHhc-------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHH
Q psy11784        189 PSGKYLVRPLGIN-------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       189 ~~~~~l~~~L~~~-------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id  255 (284)
                      +++++|+++|+++             .|+|+++++. .......+++.|+++||++.+.+  .+.+||+||+++|++|||
T Consensus       346 ~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~-~~~~~~~~~~~l~~~Gvl~~~~g--~~~lr~~P~l~~t~~eid  422 (431)
T TIGR03251       346 VQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLP-STADRDEVIRQLYREGVLLLGCG--ERSIRFRPPLTVTREEID  422 (431)
T ss_pred             HHHHHHHHHHHHHHHhCccceecccccceeEEEEeC-CHHHHHHHHHHHHhCCeEEecCC--CCeEEEECCccCCHHHHH
Confidence            9999999988764             6789999984 44456789999999999998643  478999999999999999


Q ss_pred             HHHHHHHHH
Q psy11784        256 FIVSTLNRI  264 (284)
Q Consensus       256 ~~~~~l~~~  264 (284)
                      +++++|+++
T Consensus       423 ~~l~~l~~~  431 (431)
T TIGR03251       423 AAIDAIRRV  431 (431)
T ss_pred             HHHHHHHhC
Confidence            999999763

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=4.8e-47  Score=353.69  Aligned_cols=250  Identities=20%  Similarity=0.291  Sum_probs=199.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccch---hhhcCCCCcccccCCCCCceE-EccCCCCcCCCCCCCchHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVN---LLLDISPRAFMLSSEKKPWVH-VIPFPDTYRGEFSADDPQAAQKY   76 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   76 (284)
                      |||||+|+|+||+||||++|++|++||||+|+   ++++.++....   ..+.... ..+.++....+|++         
T Consensus       120 sEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d---------  187 (433)
T PRK00615        120 TEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLD---TLTHLVDTDLAHPLTLSLPYND---------  187 (433)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcC---cCCCCCCCCCCCCCeEeCCCCC---------
Confidence            69999999999999999999999999999984   44444432100   0000000 01112222334543         


Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++++.+++|+||+||+||++|+++|+++||++|+++|++||++||+||||||| |+|. +|+++++|+.||++
T Consensus       188 ~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~-~ga~~~~gv~PDi~  265 (433)
T PRK00615        188 FQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ-GGAAAIYHVKPDIT  265 (433)
T ss_pred             HHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccH-hHHHHhcCCCCCeE
Confidence            677888887666679999999999999999999999999999999999999999999999 9997 88999999999999


Q ss_pred             EecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 TVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      |+||+++||+|+|++++++++++.+..                                ++++++++++|+++|+++   
T Consensus       266 ~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~  345 (433)
T PRK00615        266 VYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRS  345 (433)
T ss_pred             EEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987631                                458888999998887764   


Q ss_pred             ---------cCceeEEEEecc------------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHH
Q psy11784        202 ---------LHIFWCLILLSI------------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVST  260 (284)
Q Consensus       202 ---------~G~~~~i~~~~~------------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~  260 (284)
                               .|+|+++++..+            ......+.+.|+++||++.+..+...    ..+..||++|||+++++
T Consensus       346 ~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~----~ls~~ht~~did~~~~a  421 (433)
T PRK00615        346 QGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEAS----FLSSAHSMENLDYAQNV  421 (433)
T ss_pred             cCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccccc----ceecCCCHHHHHHHHHH
Confidence                     688999999621            22345789999999999987543222    34779999999999999


Q ss_pred             HHHHHHHH
Q psy11784        261 LNRIFTSL  268 (284)
Q Consensus       261 l~~~l~~~  268 (284)
                      ++++++.+
T Consensus       422 ~~~~~~~~  429 (433)
T PRK00615        422 LIDSLEKV  429 (433)
T ss_pred             HHHHHHHH
Confidence            99999876

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=100.00  E-value=8.6e-47  Score=350.98  Aligned_cols=248  Identities=25%  Similarity=0.433  Sum_probs=207.5

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|+|+||+|+      +|.+|++|+++|||+|.+++++++......  .+++.        +..+.++++     
T Consensus       106 seA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~d-----  172 (406)
T PRK12381        106 AEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPP--------DIRHAAYND-----  172 (406)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCC--------CeeEeCCCC-----
Confidence            699999999999995      789999999999999998888775432110  11111        122233443     


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                          ++++++.+.   +++++||+||+++++|+++++++|+++|+++|++||++||+|||||||||+|+ +|+++++++.
T Consensus       173 ----~~~l~~~l~---~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~-~~~~~~~~v~  244 (406)
T PRK12381        173 ----LNSASALID---DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVT  244 (406)
T ss_pred             ----HHHHHHhcc---CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc-hhhhHhhCCC
Confidence                677787774   46999999999999999999999999999999999999999999999999998 7888899999


Q ss_pred             CcEEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        153 PDIITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       153 pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      ||++++||++++|+|+|++++++++++.+..                             +++++++++++++.|+++  
T Consensus       245 pDi~t~sK~l~gG~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~  324 (406)
T PRK12381        245 PDVLTTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINA  324 (406)
T ss_pred             CCEEEehhhhhCCCceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999987643                             347888999999998875  


Q ss_pred             ----------cCceeEEEEecc-cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        202 ----------LHIFWCLILLSI-TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       202 ----------~G~~~~i~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                                .|+|+++++.+. ...+..+.+.|+++||++.+.+  .+++||.||+++|+++|++++++|+++++++..
T Consensus       325 ~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~  402 (406)
T PRK12381        325 RYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAG--PNVVRFAPALNISEEEITTGLDRFARACERFVS  402 (406)
T ss_pred             hCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeCC--CCEEEEeCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence                      578888888522 2356788999999999998643  479999999999999999999999999988765


Q ss_pred             c
Q psy11784        271 D  271 (284)
Q Consensus       271 ~  271 (284)
                      +
T Consensus       403 ~  403 (406)
T PRK12381        403 R  403 (406)
T ss_pred             c
Confidence            4

>PRK07046 aminotransferase; Validated

Probab=100.00  E-value=3e-46  Score=350.39  Aligned_cols=246  Identities=23%  Similarity=0.304  Sum_probs=194.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcC--CCCccccc--CCCCCceEEccCCCCcCCCCCCCchHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDI--SPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQAAQKY   76 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (284)
                      |||||+|||+||.||||++|++|+|+|||++++++..  ++......  .+.+..   . .++....+|++         
T Consensus       140 tEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~---~-~~~~~~~~~nd---------  206 (453)
T PRK07046        140 TDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHD---L-TATTRVVEFND---------  206 (453)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCcc---c-cCceEeeCCCC---------
Confidence            6999999999999999999999999999998776643  11110110  111110   0 11223344554         


Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++.+++.+.  .+++||||+||+||++|.++|+++||++|+++|++||++||+|||+| | |+|. +.+.+++|++||++
T Consensus       207 ~~~l~~~l~--~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-f-r~g~-Gg~~~~~gv~PDi~  281 (453)
T PRK07046        207 LAALEAALA--DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-I-SSGP-GGYTRAHGLEPDFL  281 (453)
T ss_pred             HHHHHHHhC--CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-C-ccCC-cchhHHhCCCccce
Confidence            678888884  45699999999999999999999999999999999999999999999 6 5775 34567789999999


Q ss_pred             EecccccCCcceeEEEecHHHHHhch---------h-----------------------------hhhHHHHHHHHHHHH
Q psy11784        157 TVGKPMGNGMPIGAVITSRKIAESLN---------C-----------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       157 ~~sK~l~~G~p~gav~~~~~i~~~~~---------~-----------------------------l~~~~~~~~~l~~~L  198 (284)
                      |+||+++||+|+|++++++++++.+.         .                             ++++++++++|+++|
T Consensus       282 t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L  361 (453)
T PRK07046        282 VVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGL  361 (453)
T ss_pred             eehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998763         0                             458889999999999


Q ss_pred             Hhc------------cCceeEEEEec-------------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        199 GIN------------LHIFWCLILLS-------------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       199 ~~~------------~G~~~~i~~~~-------------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      +++            .|+++.+.+.+             +......++..|+++||++.+.   ++.++++|+  +|++|
T Consensus       362 ~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---~~~~~~~p~--~t~~d  436 (453)
T PRK07046        362 RAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF---HNMMLVCPA--TTAAD  436 (453)
T ss_pred             HHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc---cCcEEEeCC--CCHHH
Confidence            875            67788887641             1123456788899999999862   467888886  89999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11784        254 VLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       254 id~~~~~l~~~l~~~~  269 (284)
                      ||+++++++++++++.
T Consensus       437 id~~~~~~~~~l~~~~  452 (453)
T PRK07046        437 VDRLVAAFDACLGELL  452 (453)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998763

>PLN02624 ornithine-delta-aminotransferase

Probab=100.00  E-value=8.2e-45  Score=343.02  Aligned_cols=248  Identities=22%  Similarity=0.383  Sum_probs=202.7

Q ss_pred             CcHHHHHHHHHHHcc--------CCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCch
Q psy11784          1 SEANDLALQLARAYT--------GRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~~--------~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~   70 (284)
                      |||||+|||+||.|+        +|.+|++|.++|||+|.+++++++..... . .+..        |.....+|++   
T Consensus       142 seA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~--------~~~~~~~~~d---  210 (474)
T PLN02624        142 AEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLL--------PGHLKVDFGD---  210 (474)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCC--------CCceEeCCCC---
Confidence            699999999999974        45689999999999999999887532111 1 1111        1111223333   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         71 QAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                            ++.+++.++...+++++||+||+++++|.++++++||++|+++|++||++||+||||+||||+|+ +|++++++
T Consensus       211 ------~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~-~~a~~~~~  283 (474)
T PLN02624        211 ------LDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGK-MLACDWEE  283 (474)
T ss_pred             ------HHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcc-hhhHHhcC
Confidence                  57788888755567999999999999999999999999999999999999999999999999998 78888899


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +.||++++||++++| +|+|++++++++++.+..                             .+++.++++++++.|++
T Consensus       284 i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~  363 (474)
T PLN02624        284 VRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQK  363 (474)
T ss_pred             CCCCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            999999999999988 799999999998876542                             22567788888888876


Q ss_pred             c-------------cCceeEEEEecc---cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        201 N-------------LHIFWCLILLSI---TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       201 ~-------------~G~~~~i~~~~~---~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      +             .|+|+++++...   ...+.++++.|+++||++.+.+  +++|||.||+++|+++|++++++|+++
T Consensus       364 l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~--~~~lR~~p~l~~t~e~id~~l~~L~~~  441 (474)
T PLN02624        364 IQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTH--DTIIRLAPPLSISEDELQECSKALSDV  441 (474)
T ss_pred             HHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecCC--CCEEEEECCccCCHHHHHHHHHHHHHH
Confidence            4             477888877421   2456789999999999998753  589999999999999999999999999


Q ss_pred             HHHH
Q psy11784        265 FTSL  268 (284)
Q Consensus       265 l~~~  268 (284)
                      +..-
T Consensus       442 l~~~  445 (474)
T PLN02624        442 LEHD  445 (474)
T ss_pred             HHHH
Confidence            8654

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=100.00  E-value=1.2e-45  Score=335.36  Aligned_cols=203  Identities=35%  Similarity=0.562  Sum_probs=168.1

Q ss_pred             CcHHHHHHHHHH------HccCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLAR------AYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr------~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|||+||      ..++|++|++|+++|||+|.+++++++......  ........++|+|+...       ++.
T Consensus        86 seAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~~~  158 (339)
T PF00202_consen   86 SEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAA-------DEE  158 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHH-------HHH
T ss_pred             hHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccch-------hhh
Confidence            699999999999      778999999999999999999998875532221  22334455567776433       223


Q ss_pred             HHHHHHHHHHHHH-hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIME-AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~-~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ...+.+.+++.+. ...+++||||+|||||++|.+++|++||++|+++|++||++||+|||||||||+|+ +|+++++|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~-~~a~~~~gv  237 (339)
T PF00202_consen  159 EQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK-FFASEHYGV  237 (339)
T ss_dssp             HHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS-SSGHHHHTS
T ss_pred             HHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCC-ccceecccc
Confidence            3444566666555 34566999999999999999999999999999999999999999999999999998 899999999


Q ss_pred             CCcEEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        152 VPDIITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       152 ~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      .||++|+||+++||+|+|++++++++++.+..                             ++++++++++|+++|+++ 
T Consensus       238 ~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~  317 (339)
T PF00202_consen  238 DPDIVTFGKGLGGGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLRELA  317 (339)
T ss_dssp             SSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccccccchhhhhhcccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998843                             448899999999999987 


Q ss_pred             -----------cCceeEEEEe
Q psy11784        202 -----------LHIFWCLILL  211 (284)
Q Consensus       202 -----------~G~~~~i~~~  211 (284)
                                 .|+|++++++
T Consensus       318 ~~~~~i~~vrg~Gl~~~ie~~  338 (339)
T PF00202_consen  318 ARYPLIGEVRGIGLMIGIELV  338 (339)
T ss_dssp             HHTTTEEEEEEETTEEEEEES
T ss_pred             HhCCCeEEEeeeCeEEEEEEE
Confidence                       7999999884

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=100.00  E-value=3e-43  Score=328.97  Aligned_cols=260  Identities=23%  Similarity=0.370  Sum_probs=212.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      |||||.|||+||.+++|.+||+|+++|||++.+++++++..  +..+ ...+..+...|+|..++.    .   ..+.++
T Consensus       112 sea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~---~~~~~~  184 (425)
T PRK08088        112 SEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG----V---SEDDAI  184 (425)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccC----c---cHHHHH
Confidence            68999999999999999999999999999999988876431  1111 111222333444432221    1   122346


Q ss_pred             HHHHHHHH--hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         78 QAARNIME--AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        78 ~~l~~~i~--~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +.++++++  ..++++++||+||+|+++|.++++++|+++|+++|++||+++|.||+|+||||+|+ +++++++++.||+
T Consensus       185 ~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~-~~~~~~~~~~pdi  263 (425)
T PRK08088        185 ASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMGVAADL  263 (425)
T ss_pred             HHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhHHhhcCCCCCE
Confidence            77888886  23466999999999999999999999999999999999999999999999999997 7788888999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      .+|||++++|+|+|++++++++++.+..                             ++++++.++++++.|+++     
T Consensus       264 ~s~sK~l~~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  343 (425)
T PRK08088        264 TTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHP  343 (425)
T ss_pred             EEEeccccCCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999987754                             447888888888888766     


Q ss_pred             -------cCceeEEEEe-------cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILL-------SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 -------~G~~~~i~~~-------~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                             .|+|+++++.       +.......+++.|+++||++.+++..++.+||.||+.+|+++|++++++|.+++..
T Consensus       344 ~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~  423 (425)
T PRK08088        344 EIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDE  423 (425)
T ss_pred             CeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence                   4899999984       22345788999999999998876666799999999999999999999999999875


Q ss_pred             H
Q psy11784        268 L  268 (284)
Q Consensus       268 ~  268 (284)
                      +
T Consensus       424 ~  424 (425)
T PRK08088        424 A  424 (425)
T ss_pred             h
Confidence            4

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=100.00  E-value=1.7e-42  Score=321.36  Aligned_cols=239  Identities=24%  Similarity=0.419  Sum_probs=197.1

Q ss_pred             CcHHHHHHHHHHHc--------cCCccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcCCCCCCCch
Q psy11784          1 SEANDLALQLARAY--------TGRQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYRGEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~--------~~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   70 (284)
                      |||||+|||+||+|        +||.+||++.++|||++.+++++++... ... ......+.++        ++++   
T Consensus       107 seA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~d---  175 (396)
T PRK04073        107 AEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKI--------PYGD---  175 (396)
T ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEe--------CCCC---
Confidence            69999999999998        5889999999999999999888775321 110 1111111222        2332   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         71 QAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                            ++.+++.+.   +++++||+||+++++|.+.++++||++|+++|++||++||+||||+||||+|+ ++++++++
T Consensus       176 ------~~~l~~~i~---~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~~  245 (396)
T PRK04073        176 ------LEALKAAIT---PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK-LFACDWDN  245 (396)
T ss_pred             ------HHHHHHhcc---cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH-HHHhhhcC
Confidence                  567777664   46899999999999999999999999999999999999999999999999997 77888889


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +.||++++||++++| +|+|++++++++++.+..                             .++++++++++.+.|++
T Consensus       246 ~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~  325 (396)
T PRK04073        246 VTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKE  325 (396)
T ss_pred             CCCCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence            999999999999987 899999999999987642                             24677889999999877


Q ss_pred             c----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        201 N----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       201 ~----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      +          .|+|+++++.   ..+..+++.|+++||++.+.  .+++|||+||+++|++|+++++++|++++
T Consensus       326 l~~~~i~~~~~~g~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~--~~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        326 IDNPMIKEVRGRGLFIGVELN---EPARPYCEALKEEGLLCKET--HETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             hcCCcccceecceEEEEEEec---chHHHHHHHHHHCCeEEecC--CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence            4          5777888774   24568899999999999864  24799999999999999999999998875

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=100.00  E-value=3.7e-42  Score=319.70  Aligned_cols=246  Identities=23%  Similarity=0.419  Sum_probs=201.9

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccC-CCCcCCCCCCCchHHH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPF-PDTYRGEFSADDPQAA   73 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   73 (284)
                      |||||+|+|+||.|+      +|.+||+|+++|||++.+++++++..... .+.      .|. ++..+.++++      
T Consensus       107 seA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~d------  173 (403)
T PRK05093        107 AEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYS-DGF------GPKPADITHVPFND------  173 (403)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhh-hcC------CCCCCCcEEeCCCC------
Confidence            689999999999995      68899999999999999887776432111 111      011 1122333443      


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC
Q psy11784         74 QKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        74 ~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                         ++.+++.+.   +++++||+||+++++|+.+++++|+++|+++|++||+++|+||||+||||+|+ +++++++++.|
T Consensus       174 ---~~~l~~~l~---~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~~~p  246 (403)
T PRK05093        174 ---LAAVKAVID---DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD-LFAYMHYGVTP  246 (403)
T ss_pred             ---HHHHHHHhc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chhhhhcCCCC
Confidence               677777774   46999999999999999999999999999999999999999999999999997 67778889999


Q ss_pred             cEEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        154 DIITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       154 Div~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      |+++|||++++|+|+|++++++++++.+..                             .++++++++++.+.|+++   
T Consensus       247 di~s~sK~l~~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  326 (403)
T PRK05093        247 DILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQK  326 (403)
T ss_pred             CEEEecccccCCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999887653                             337778899999999875   


Q ss_pred             ---------cCceeEEEEecc-cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 ---------LHIFWCLILLSI-TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 ---------~G~~~~i~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                               .|+++++++.+. .....++++.|+++||++.+.+  .+.+|+.||+.+|+++|++++++|+++++++
T Consensus       327 ~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~  401 (403)
T PRK05093        327 YGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVAG--PDVLRFAPSLVIEEADIDEGLARFEKAVAKV  401 (403)
T ss_pred             CCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                     377888887422 1356789999999999998743  4799999999999999999999999998754

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=1.2e-42  Score=324.82  Aligned_cols=253  Identities=28%  Similarity=0.374  Sum_probs=202.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccc-ccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFM-LSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |||||+|+|+||.++||++||+|.++|||+|.++.+.++.... ..............++.++.+|++         ++.
T Consensus       116 seA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~~  186 (426)
T PRK00062        116 TEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYND---------LEA  186 (426)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCC---------HHH
Confidence            6999999999999999999999999999999877766432111 000111110000012344555554         678


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      +++.+++..+++++||+||+||++|.++++++||++|+++|++||+++|+||||||| |+|. +++++++++.||++++|
T Consensus       187 l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~-~~~~~~~~~~pDi~~~g  264 (426)
T PRK00062        187 VEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVAL-GGAQGYYGVTPDLTTLG  264 (426)
T ss_pred             HHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCC-ccHHHHhCCCcchHhhh
Confidence            888887656679999999999999999999999999999999999999999999999 8987 77888899999999999


Q ss_pred             ccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      |++++|+|+|++++++++++.+..                                +++++++++++++.|+++      
T Consensus       265 K~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  344 (426)
T PRK00062        265 KIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGI  344 (426)
T ss_pred             hHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999987631                                347778899999988754      


Q ss_pred             ------cCceeEEEEecc------------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSI------------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 ------~G~~~~i~~~~~------------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                            .|+|+++++.++            ...+..+++.|+++||++.+.+  .+.+++  ++++|++|||+++++|++
T Consensus       345 ~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~--~~~~~~--~~~~t~~ei~~~~~~l~~  420 (426)
T PRK00062        345 PLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQ--FEAGFV--SAAHTDEDIEKTLEAARK  420 (426)
T ss_pred             ceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCC--cCceee--eccCCHHHHHHHHHHHHH
Confidence                  688999988622            1235689999999999998754  245565  689999999999999999


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      +++.+
T Consensus       421 ~l~~~  425 (426)
T PRK00062        421 AFAAL  425 (426)
T ss_pred             HHHhh
Confidence            98764

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=4.9e-42  Score=317.45  Aligned_cols=241  Identities=27%  Similarity=0.449  Sum_probs=198.0

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|+|+||.|      ++|++||+++++|||++.++.+.+.......  ......+.++|        +++     
T Consensus        98 seA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d-----  164 (389)
T PRK01278         98 AEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVP--------FGD-----  164 (389)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeC--------CCC-----
Confidence            68999999999998      6788999999999999999887765321110  01111111122        232     


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                          .+.+++.+.   +++++||+||+++.+|+.++|++|+++|+++|++||++||+||||+||||+|+ +++++++++.
T Consensus       165 ----~~~l~~~l~---~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~~~  236 (389)
T PRK01278        165 ----IEALKAAIT---PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK-LFAHEWAGVT  236 (389)
T ss_pred             ----HHHHHHhhC---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-ceeecccCCC
Confidence                577787775   47999999999999999999999999999999999999999999999999998 7788888999


Q ss_pred             CcEEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        153 PDIITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       153 pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      ||++++||++++|+|+|++++++++++.+..                             .+++++++++++++|+++  
T Consensus       237 pdi~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~  316 (389)
T PRK01278        237 PDIMAVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVD  316 (389)
T ss_pred             CCEEEEehhccCCcceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999887643                             235777888888888764  


Q ss_pred             -----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 -----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 -----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                                 .|+++++++.   .....+++.|+++||++.|++  .+++||.||+++|+++|++++++|++++++
T Consensus       317 ~~~~~~~~v~g~G~~~~i~~~---~~~~~~~~~l~~~GV~~~p~~--~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~  388 (389)
T PRK01278        317 RFPDVIEEVRGKGLLLGLKCV---VPNRDLVQALRDEGLLTVGAG--DNVVRLLPPLIITEEEIDEALERLERAAES  388 (389)
T ss_pred             hCCCceeeEecccEEEEEEEe---cCHHHHHHHHHHCCeEEeecC--CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence                       3566777663   246789999999999998754  589999999999999999999999998865

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=100.00  E-value=5.9e-42  Score=318.13  Aligned_cols=245  Identities=22%  Similarity=0.384  Sum_probs=201.4

Q ss_pred             CcHHHHHHHHHHHc--------cCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCch
Q psy11784          1 SEANDLALQLARAY--------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~--------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   70 (284)
                      |||||+|+|+||.|        ++|++|++++++|||++.+.+++++......  ....        |.....+|++   
T Consensus       104 s~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d---  172 (401)
T TIGR01885       104 AEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYV--------PGFKKIPYNN---  172 (401)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCC--------CCceEeCCCC---
Confidence            58999999999997        3688999999999999998888764321110  1111        1122233443   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         71 QAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                            .++++++++..++++++||+||+++++|.+.++++||++|+++|++||+++|+||||+||||+|+ +++.++++
T Consensus       173 ------~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~-~~~~~~~~  245 (401)
T TIGR01885       173 ------LEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK-LLCVDHEN  245 (401)
T ss_pred             ------HHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hhHHhhcC
Confidence                  67888888765567999999999999999999999999999999999999999999999999997 77778889


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +.||++++||++++| +|+|++++++++++.+..                             .++++++++++++.|++
T Consensus       246 ~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~  325 (401)
T TIGR01885       246 VKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKK  325 (401)
T ss_pred             CCCCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            999999999999987 799999999999887643                             23677888999999987


Q ss_pred             c----------cCceeEEEEeccc--HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        201 N----------LHIFWCLILLSIT--YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       201 ~----------~G~~~~i~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      +          .|+|+++.+....  ..+.++++.|.++||++.+.+  .+++||.||+++|+++|++++++|++++
T Consensus       326 l~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~--~~~lRi~p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       326 LPKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTH--GNIIRLAPPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             ccCCceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEecC--CCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence            5          5777777774221  257889999999999998753  5899999999999999999999998876

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=100.00  E-value=2.5e-42  Score=322.71  Aligned_cols=253  Identities=26%  Similarity=0.337  Sum_probs=198.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |||+|+|+|+||.|+||++||+|+++|||++.++.+.+....... ..........+.++.++.++++         .++
T Consensus       114 seA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~~  184 (423)
T TIGR00713       114 TEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYND---------LEA  184 (423)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCC---------HHH
Confidence            699999999999999999999999999999887776543211000 0000000001123334444543         678


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      +++.+..+.+++++||+||+++++|.++++++|+++|+++|++||++||+||||+|| |+|. +++++++++.||++|||
T Consensus       185 l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~-~~~~~~~~~~pDi~t~s  262 (423)
T TIGR00713       185 LEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVAL-GGAQEYFGVEPDLTTLG  262 (423)
T ss_pred             HHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCc-chhHHHhCCCcchhhhh
Confidence            888887555679999999999999999888999999999999999999999999999 9987 67888899999999999


Q ss_pred             ccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      |++++|+|+|++++++++++.+..                                +++++++++++++.|+++      
T Consensus       263 K~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  342 (423)
T TIGR00713       263 KIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGI  342 (423)
T ss_pred             hhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999887741                                346778888888887653      


Q ss_pred             ------cCceeEEEEecc------------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSI------------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 ------~G~~~~i~~~~~------------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                            .|+|+++++..+            ......+++.|+++||++.+.+  .+.+|++|+  +|+++|++++++|++
T Consensus       343 ~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~l~~~--~t~~~i~~~~~~l~~  418 (423)
T TIGR00713       343 PHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQ--FEACFLSAA--HTEEDIENTIEAAEE  418 (423)
T ss_pred             CeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCC--ccceeeECC--CCHHHHHHHHHHHHH
Confidence                  578888877521            1234578889999999987543  256889887  799999999999999


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      +++++
T Consensus       419 ~l~~~  423 (423)
T TIGR00713       419 VFAEL  423 (423)
T ss_pred             HHhhC
Confidence            98753

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=2.8e-41  Score=313.26  Aligned_cols=242  Identities=27%  Similarity=0.451  Sum_probs=201.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      +||++.|+|++|. +||.+|+.++++|||++.+++++++......  ......+.++|        +++         .+
T Consensus       113 sea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d---------~~  174 (398)
T PRK03244        113 AEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVP--------YGD---------VD  174 (398)
T ss_pred             HHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeC--------CCC---------HH
Confidence            5899999999999 5899999999999999998887764321110  11111112222        222         56


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      .+++.+.   +++++||+||+++++|.++++++|+++|+++|++||++||+||||+||||+|+ +++++++++.||++||
T Consensus       175 ~l~~~~~---~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~-~~~~~~~~~~pDi~t~  250 (398)
T PRK03244        175 ALAAAVD---DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA-WFAHQHDGVTPDVVTL  250 (398)
T ss_pred             HHHHhhc---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccch-HHhhhhhCCCCCEEEE
Confidence            7777664   46999999999999999999999999999999999999999999999999998 7788889999999999


Q ss_pred             cccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--------
Q psy11784        159 GKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--------  201 (284)
Q Consensus       159 sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--------  201 (284)
                      ||++++|+|+|++++++++++.+..                             .+++++++++|++.|+++        
T Consensus       251 sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~v  330 (398)
T PRK03244        251 AKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEALGHPLVDHV  330 (398)
T ss_pred             chhhhCCcccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCceeeE
Confidence            9999999999999999999887653                             347888999999999874        


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                        .|+++++++. . ..+..+.+.|+++||++.+.+  .+.|||+||+.+|++||++++++|+++++++
T Consensus       331 ~g~g~~~~i~~~-~-~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~  395 (398)
T PRK03244        331 RGRGLLLGIVLT-A-PVAKAVEAAAREAGFLVNAVA--PDVIRLAPPLIITDAQVDAFVAALPAILDAA  395 (398)
T ss_pred             eeccEEEEEEEe-c-cHHHHHHHHHHHCCeEEeecC--CCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence              4778888884 2 256789999999999998743  5899999999999999999999999999765

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=6.2e-41  Score=308.78  Aligned_cols=240  Identities=27%  Similarity=0.487  Sum_probs=196.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccC-CCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPF-PDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      +||||+|+|+||.++||.+|++++++|||++.+.+++++..... .+.      .|. ++....++++         .++
T Consensus        96 ~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~d---------~~~  159 (377)
T PRK02936         96 AEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIK-EGF------GPLLPGFTHVPFND---------IKA  159 (377)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCcccc-ccC------CCCCCCceEeCCCC---------HHH
Confidence            68999999999999999999999999999998888776432111 000      010 1112223332         567


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      +++.+.   +++++||+||+++++|.++++++||++|+++|++||+++|+||||+||||+|+ +++++++++.||++++|
T Consensus       160 l~~~~~---~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~-~~~~~~~~~~~di~t~s  235 (377)
T PRK02936        160 LKEVMN---EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGT-LFAYEQFGLDPDIVTVA  235 (377)
T ss_pred             HHHhcc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhHHHhhCCCCcEEEEc
Confidence            777664   45999999999999999999999999999999999999999999999999997 67778889999999999


Q ss_pred             ccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc---------
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN---------  201 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~---------  201 (284)
                      |++++|+|+|++++++++++.+..                             +++++++++++++.|++.         
T Consensus       236 K~l~~G~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  315 (377)
T PRK02936        236 KGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKN  315 (377)
T ss_pred             ccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEe
Confidence            999999999999999999887643                             347778888888888763         


Q ss_pred             ---cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        202 ---LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       202 ---~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                         .|+++++++. .  ....+.+.|+++||++.+.+  .+++||+||+.+|++++++++++|++++
T Consensus       316 v~~~g~~~~i~~~-~--~~~~~~~~l~~~gv~v~~~g--~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        316 IRGKGLMIGIECT-E--EVAPVIEQLREEGLLVLSAG--PNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             EeecceEEEEEec-c--hHHHHHHHHHHCCeEEecCC--CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence               4667777774 2  26678889999999998743  4799999999999999999999998753

>KOG1405|consensus

Probab=100.00  E-value=1.3e-40  Score=289.28  Aligned_cols=261  Identities=19%  Similarity=0.299  Sum_probs=205.7

Q ss_pred             CcHHHHHHHHHHHcc--------------------------CCccEEEEcCCCcccchhhhcCCCCcccccCCCC--Cce
Q psy11784          1 SEANDLALQLARAYT--------------------------GRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK--PWV   52 (284)
Q Consensus         1 seA~e~AlklAr~~~--------------------------~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~--~~~   52 (284)
                      |+|||.|+|.|..|.                          ..-.|++|.|+|||+++++++.+.++....-.++  +|.
T Consensus       150 s~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaFdWP  229 (484)
T KOG1405|consen  150 SCANENAYKTAFIWYRAKERGQAGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWP  229 (484)
T ss_pred             ccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCccccccCCCCCCCC
Confidence            689999999998763                          1345999999999999999999877655432222  222


Q ss_pred             EEccCCCCcCCCCCCC---chHHHHHHHHHHHHHHHhcC---CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCE
Q psy11784         53 HVIPFPDTYRGEFSAD---DPQAAQKYAQAARNIMEAHR---DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGV  126 (284)
Q Consensus        53 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~---~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~l  126 (284)
                       ..++|. |+++..++   +....+.|++++|++|..+.   ..|||+||||||++||+...+++|++.|+++|++||+.
T Consensus       230 -iA~fP~-ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~  307 (484)
T KOG1405|consen  230 -IAPFPR-YKYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVA  307 (484)
T ss_pred             -CCCCcc-ccCChhhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeE
Confidence             134442 34443322   23456788999999998544   35999999999999999999999999999999999999


Q ss_pred             EEEecccccCccccCccccccccCC--CCcEEEeccccc-CCcceeEEEecHHHHHhchh--------------------
Q psy11784        127 VIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------  183 (284)
Q Consensus       127 lI~DEv~tG~gr~G~~~~a~~~~g~--~pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------  183 (284)
                      +|+||||||-|-||+ +|+++++++  .||+|||||-+- |||--.--.-..+-+..+..                    
T Consensus       308 fivDEVQTGgGaTGk-~WaHehw~l~~PpD~vTFSKK~q~gGffh~~~frpn~pYrifNTWmGdP~k~lll~~vv~~I~~  386 (484)
T KOG1405|consen  308 FIVDEVQTGGGATGK-FWAHEHWNLDSPPDVVTFSKKFQTGGFFHDEEFRPNEPYRIFNTWMGDPSKNLLLEEVVQEIKR  386 (484)
T ss_pred             EEeeeeecCCCccCc-eeeehhcCCCCCccceehhhhhhcCccccCcccCCCchHHHhhhhcCChHHHHHHHHHHHHHhH
Confidence            999999999999998 999999987  589999999986 44321111111111222111                    


Q ss_pred             ---hhhHHHHHHHHHHHHHhc-------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCC
Q psy11784        184 ---LDDNRPSGKYLVRPLGIN-------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAM  247 (284)
Q Consensus       184 ---l~~~~~~~~~l~~~L~~~-------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l  247 (284)
                         ++++...|++|..+|.++             +|.++++++ ++.....+++..++-+|+.+..|+  ...|||+|++
T Consensus       387 ~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~-ps~~~Rdk~i~~~~~nGv~~GGCg--~~siRfRPsL  463 (484)
T KOG1405|consen  387 EDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDC-PSGSIRDKLILIARLNGVNLGGCG--DKSIRFRPSL  463 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeC-CChHHHHHHHHHHHHcCceecccc--cceeeeccce
Confidence               568899999999999888             788999998 677788899999999999998655  5789999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q psy11784        248 CLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~  267 (284)
                      +.++.+.+.++++|+++++.
T Consensus       464 vf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  464 VFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             eehhhhHHHHHHHHHHHhcc
Confidence            99999999999999998864

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=100.00  E-value=1.8e-39  Score=301.46  Aligned_cols=243  Identities=21%  Similarity=0.412  Sum_probs=198.1

Q ss_pred             CcHHHHHHHHHHHc--------cCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCch
Q psy11784          1 SEANDLALQLARAY--------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~--------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   70 (284)
                      |||||+|+|+||.|        +||.+||+|.++|||++.++.+++.......  ......+.++        ++++   
T Consensus       108 s~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~d---  176 (401)
T PRK00854        108 AEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVV--------PFGD---  176 (401)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEe--------CCCC---
Confidence            68999999999998        3678999999999999988776654321110  1111112222        3333   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         71 QAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                            .+.+++.+.   +++++||+||+++++|.+.++++||++|+++|++||++||+||||+||||+|+ +++.++++
T Consensus       177 ------~~~le~~i~---~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~-~~~~~~~g  246 (401)
T PRK00854        177 ------AEALEAAIT---PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK-LLAEEHEG  246 (401)
T ss_pred             ------HHHHHHHhC---CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch-HhHHhhcC
Confidence                  577777774   46899999999999999999999999999999999999999999999999997 67777889


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +.||++++||++++| +|+|++++++++++.+..                             .++++++++++.+.|++
T Consensus       247 ~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~  326 (401)
T PRK00854        247 IEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRS  326 (401)
T ss_pred             CCCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence            999999999999998 699999999999887653                             34677888999998877


Q ss_pred             c----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        201 N----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       201 ~----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +          .|+|+.+.+.+.......+++.|+++||++.+.  ..+++||+||+.+|+++|++++++|++++.
T Consensus       327 ~~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~--~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        327 IRSNIVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKDT--HDHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             hccCceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEecC--CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence            4          477778777543345678999999999999753  357999999999999999999999998763

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=2.5e-39  Score=298.08  Aligned_cols=240  Identities=26%  Similarity=0.444  Sum_probs=194.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ||||++|+|+||.+++|.+|+++.++|||++..+++.++..... ......     .+.....++++         ++.+
T Consensus        94 seA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~d---------l~~l  158 (375)
T PRK04260         94 AEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIK-DGFGDG-----VPHFSYAIFND---------LNSV  158 (375)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccC-CCCCCC-----CCCeEEeCCCC---------HHHH
Confidence            59999999999999999999999999999998888776432211 010000     00000011232         6777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecc
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGK  160 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK  160 (284)
                      ++.+.   +++++|++||+++++|.++++++||++++++|++||+++|+||+|+||||+|. +++++.+++.||++||||
T Consensus       159 ~~~l~---~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~-~~~~~~~~~~pdi~t~sK  234 (375)
T PRK04260        159 KALVN---KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK-LYAFEHYGIEPDIFTLAK  234 (375)
T ss_pred             HHhcC---CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhHhhCCCCCEEEecc
Confidence            77664   46899999999999999999999999999999999999999999999999997 678778899999999999


Q ss_pred             cccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc----------
Q psy11784        161 PMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN----------  201 (284)
Q Consensus       161 ~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~----------  201 (284)
                      ++++|+|+|++++++++++.+..                             +++++++++++++.|.++          
T Consensus       235 ~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  314 (375)
T PRK04260        235 GLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTV  314 (375)
T ss_pred             cccCCcceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE
Confidence            99999999999999999887643                             346777788888877664          


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                        .|+++++++.   .....+.+.|+++||++.+.+  .+.+|+.||+.+|++|+++++++|+++
T Consensus       315 ~~~g~~~~~~~~---~~~~~~~~~l~~~Gi~v~~~~--~~~lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        315 RGLGYMIGIETT---ADLSQLVEAARDKGLIVLTAG--TNVIRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             eccceEEEEEec---CcHHHHHHHHHhCCCEEecCC--CCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence              4778888873   235689999999999998653  478999999999999999999999875

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=100.00  E-value=6.8e-39  Score=297.37  Aligned_cols=247  Identities=21%  Similarity=0.407  Sum_probs=199.9

Q ss_pred             CcHHHHHHHHHHHcc--------CCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCch
Q psy11784          1 SEANDLALQLARAYT--------GRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~~--------~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   70 (284)
                      |||||+|||++|.++        ++.+||+++++|||++.+.++.+.......  ........        ..++++   
T Consensus        98 s~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d---  166 (400)
T PTZ00125         98 AEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFE--------LVDYND---  166 (400)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCce--------EeCCCC---
Confidence            689999999999762        467899999999999998887764321110  01111111        122332   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         71 QAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                            ++++++.++  .+++++|++||+++++|.+.++++|+++|+++|++||++||+||||+||||+|+ +++.++++
T Consensus       167 ------~~~le~~l~--~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~-~~~~~~~~  237 (400)
T PTZ00125        167 ------VEALEKLLQ--DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK-LLAHDHEG  237 (400)
T ss_pred             ------HHHHHHHhC--CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhHHHhcC
Confidence                  678888885  346999999999999999999999999999999999999999999999999997 67778889


Q ss_pred             CCCcEEEecccccCCc-ceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        151 AVPDIITVGKPMGNGM-PIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +.||++++||++++|+ |+|++++++++++.+..                             .++++++++++++.|++
T Consensus       238 ~~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~  317 (400)
T PTZ00125        238 VKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKE  317 (400)
T ss_pred             CCCCEEEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999985 99999999999887643                             23567788888888876


Q ss_pred             c------------cCceeEEEEec-ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        201 N------------LHIFWCLILLS-ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       201 ~------------~G~~~~i~~~~-~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +            .|+++++++.. +......+++.|+++||++.|.  .++++||.|++.++++++++++++|++++++
T Consensus       318 l~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~--~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~  395 (400)
T PTZ00125        318 LLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPT--HDNIIRFAPPLVITKEQLDQALEIIKKVLKS  395 (400)
T ss_pred             HHhcCCCeEEEecccEEEEEEEccCcchHHHHHHHHHHHCCeEEeec--CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            4            47778887742 2345778999999999999874  3589999999999999999999999999988


Q ss_pred             Hh
Q psy11784        268 LQ  269 (284)
Q Consensus       268 ~~  269 (284)
                      +.
T Consensus       396 ~~  397 (400)
T PTZ00125        396 FD  397 (400)
T ss_pred             Hh
Confidence            74

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=100.00  E-value=1.1e-38  Score=298.42  Aligned_cols=238  Identities=21%  Similarity=0.309  Sum_probs=181.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEE-cCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVV-DAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~-~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |||||+|+|+||+||||++|++| .++|||+..+....+...    .+.+...  .  +....++|++         +++
T Consensus       114 seA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~----~~~~~~~--~--~~~~~~~~~d---------~~~  176 (431)
T PRK06209        114 SDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMS----AGIPASV--S--ALTVTFRYND---------IAS  176 (431)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCC----CCCChhH--h--ccccccCCCC---------HHH
Confidence            69999999999999999999999 789998654433222110    0111000  0  1122334554         688


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      ++++++++.+++|+||+||++|+    .++++||++|+++|++||++||+|||||||++++  +++.+++|+.||++|+|
T Consensus       177 l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~--~g~~~~~gv~PDi~t~g  250 (431)
T PRK06209        177 LEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM--RGAQKLYGIVPDLSCFG  250 (431)
T ss_pred             HHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc--chhhHHhCCCcceeeeh
Confidence            88888766667999999999987    7889999999999999999999999999997754  34445689999999999


Q ss_pred             ccccCCcceeEEEecHHHHHh--c-----h-----h-------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        160 KPMGNGMPIGAVITSRKIAES--L-----N-----C-------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~--~-----~-----~-------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      |++|||+|+|++++++++++.  +     .     .                         ++++++++++|++.|+++ 
T Consensus       251 K~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~  330 (431)
T PRK06209        251 KALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAA  330 (431)
T ss_pred             hhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999886  2     0     0                         347889999999999774 


Q ss_pred             -----------cCceeEEEEec-----c--cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 -----------LHIFWCLILLS-----I--TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 -----------~G~~~~i~~~~-----~--~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                                 .|.++.+.+..     .  ......+.+.|+++|+++.+         ++.+..||++|||+++++|++
T Consensus       331 ~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~---------l~is~~ht~~dId~~l~~l~~  401 (431)
T PRK06209        331 AEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS---------LVVSYAHGDADIERTIDAVHG  401 (431)
T ss_pred             HhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc---------ccccccCCHHHHHHHHHHHHH
Confidence                       35666666641     1  12234688899999998732         233567899999999999999


Q ss_pred             HHHHHhh
Q psy11784        264 IFTSLQM  270 (284)
Q Consensus       264 ~l~~~~~  270 (284)
                      +++++.+
T Consensus       402 ~l~~~~~  408 (431)
T PRK06209        402 ALGVYRK  408 (431)
T ss_pred             HHHHHHH
Confidence            9998853

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=2e-37  Score=286.93  Aligned_cols=242  Identities=27%  Similarity=0.438  Sum_probs=196.8

Q ss_pred             CcHHHHHHHHHHHccCC-----ccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHHH
Q psy11784          1 SEANDLALQLARAYTGR-----QNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQAA   73 (284)
Q Consensus         1 seA~e~AlklAr~~~~r-----~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (284)
                      +||+++|+|+||.++++     .+|+++.++|||.+..+.+.+.......  ......+..        .++++      
T Consensus       106 ~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~d------  171 (396)
T PRK02627        106 AEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIY--------VPFND------  171 (396)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceE--------eCCCC------
Confidence            58999999999999887     8899999999999988877654321110  011111111        12232      


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC
Q psy11784         74 QKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        74 ~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                         ++++++.+.   +++++|++||+++.+|..+++++++++|+++|++||++||+||+|+||||+|+ +++++.+++.|
T Consensus       172 ---~~~l~~~i~---~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~-~~~~~~~~~~p  244 (396)
T PRK02627        172 ---IEALKAAIT---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYGIEP  244 (396)
T ss_pred             ---HHHHHHhcC---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc-eeeehhcCCCC
Confidence               677777773   56999999999999998899999999999999999999999999999999997 67888889999


Q ss_pred             cEEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        154 DIITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       154 Div~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      |+++|||++++|+|+|++++++++++.+..                             +++++++++++++.|+++   
T Consensus       245 di~t~sK~~~~G~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (396)
T PRK02627        245 DIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEK  324 (396)
T ss_pred             CEEEEcchhhCCcccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999887653                             336777788888877664   


Q ss_pred             ---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 ---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 ---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                               .|+++++++.   ....++++.|+++||++.+.+  .+++|++||+.+|++++++++++|+++++++
T Consensus       325 ~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~  395 (396)
T PRK02627        325 YPGIKEVRGLGLMIGIELD---RPAAEIVKKALEKGLLINVTG--DNVLRLLPPLIISKEEIDEAVDRLEEVLKEL  395 (396)
T ss_pred             CCCeeeeccCcEEEEEEec---CcHHHHHHHHHHCCeEEeecC--CCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence                     3667777762   246789999999999999754  4789999999999999999999999988654

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=100.00  E-value=5.7e-37  Score=285.25  Aligned_cols=256  Identities=32%  Similarity=0.549  Sum_probs=203.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||+++|++++|.++++.+|++++++|||++...++.+.......  ......+..+|.+...+.      .+.....++
T Consensus       106 sea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~  179 (413)
T cd00610         106 TEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRP------PAELADDLE  179 (413)
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccc------hhhHHHHHH
Confidence            589999999999999999999999999999988887764321111  111112223343321110      011223367


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      .|++.++.+++.+++|++||+++++|...++++|+++|+++|++||+++|+||+|+||||+|. +++++++++.||++++
T Consensus       180 ~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~-~~~~~~~~~~~d~~t~  258 (413)
T cd00610         180 ALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK-MFAFEHFGVEPDIVTL  258 (413)
T ss_pred             HHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhhHhhcCCCCCeEEE
Confidence            888888755557999999999999999999999999999999999999999999999999997 6778888999999999


Q ss_pred             cccccCCcceeEEEecHHHHHhc--hh-----------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        159 GKPMGNGMPIGAVITSRKIAESL--NC-----------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       159 sK~l~~G~p~gav~~~~~i~~~~--~~-----------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      ||++++|+|+|++++++++++.+  ..                             .++++++++++++.|+++      
T Consensus       259 sK~l~~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  338 (413)
T cd00610         259 GKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPL  338 (413)
T ss_pred             cccccCccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            99999999999999999999875  21                             236777888888888764      


Q ss_pred             ------cCceeEEEEecc-------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSI-------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       202 ------~G~~~~i~~~~~-------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                            .|.++++.+.+.       ......+++.|+++||++.+++  ++.+|+.|++.+|+++|++++++|++++
T Consensus       339 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~--~~~lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         339 VGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG--GNVIRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             EEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC--CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence                  466777777422       1456789999999999999864  5899999999999999999999998763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.98  E-value=1.1e-30  Score=240.52  Aligned_cols=239  Identities=28%  Similarity=0.488  Sum_probs=187.1

Q ss_pred             CcHHHHHHHHHHHccC-----CccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccC-CCCcCCCCCCCchHHHH
Q psy11784          1 SEANDLALQLARAYTG-----RQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPF-PDTYRGEFSADDPQAAQ   74 (284)
Q Consensus         1 seA~e~AlklAr~~~~-----r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   74 (284)
                      +||++.|++++|.+++     +.+|+++..+|||.+..+...+........       ..|. ++....++++       
T Consensus        94 ~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~d-------  159 (379)
T TIGR00707        94 AEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKG-------FEPLVPGFSYAPYND-------  159 (379)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhcc-------CCCCCCCceeeCCCC-------
Confidence            5899999999998876     689999999999998877655432211000       0010 1111112232       


Q ss_pred             HHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         75 KYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        75 ~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                        .+.+++.+.   +.+++|++||+++++|..+++.+++++|.++|++||+++|+||+|+|||++|. ++.....++.||
T Consensus       160 --~~~l~~~~~---~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~-~~~~~~~~~~~d  233 (379)
T TIGR00707       160 --IESLKKAID---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHYGIEPD  233 (379)
T ss_pred             --HHHHHHHhh---hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhhHHhcCCCCC
Confidence              567777775   35789999999999998888999999999999999999999999999999886 556666788999


Q ss_pred             EEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        155 IITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       155 iv~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                      ++++||++++|+|+|++++++++++.+..                             .+++++++++++++|+++    
T Consensus       234 ~~t~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  313 (379)
T TIGR00707       234 IITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNY  313 (379)
T ss_pred             EEEEcccccCCcccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999887653                             236667778888877764    


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                             .|.++++.+. .  ....+.+.|+++||++.+.+  .+.+|++|++++|++++++++++|+++
T Consensus       314 ~~~~~~~~g~~~~~~~~-~--~~~~~~~~l~~~Gv~v~~~~--~~~lRi~~~~~~t~~~i~~~~~~l~~~  378 (379)
T TIGR00707       314 PNKEVRGKGLMLGIELE-A--PCKDIVKKALEKGLLVNCAG--PKVLRFLPPLIITKEEIDEAVSALEEA  378 (379)
T ss_pred             CCCccccCceEEEEEec-C--cHHHHHHHHHHCCcEEeeCC--CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence                   3456666663 2  25788999999999999753  479999999999999999999999875

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK07505 hypothetical protein; Provisional

Probab=99.94  E-value=1e-24  Score=202.74  Aligned_cols=231  Identities=15%  Similarity=0.160  Sum_probs=158.4

Q ss_pred             CcHHHHHHHHHHHc--c-CCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAY--T-GRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~--~-~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      +||++.|+|+++..  + +|.++|++.++|||........     .. . . ..+..+|.+        +         .
T Consensus       115 ~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~-----~~-~-~-~~v~~~~~~--------d---------~  169 (402)
T PRK07505        115 SAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGI-----CA-D-E-TEVETIDHN--------D---------L  169 (402)
T ss_pred             HHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhh-----hh-c-C-CeEEEeCCC--------C---------H
Confidence            58999999998753  4 6788999999999843211111     00 0 0 112233332        2         5


Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccc--ccCccccCccccccccCC-CCc
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQ--CGMGRSGSHFWAFQTQGA-VPD  154 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~--tG~gr~G~~~~a~~~~g~-~pD  154 (284)
                      +.+++.+..  ...+++|+||++++|+. .+    +++|+++|++||++||+||+|  +||||+|. +++.++++. .||
T Consensus       170 ~~l~~~~~~--~~~~~vl~~p~~~~G~~-~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~-~~~~~~~~~~~~d  241 (402)
T PRK07505        170 DALEDICKT--NKTVAYVADGVYSMGGI-AP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGE-GYVRSELDYRLNE  241 (402)
T ss_pred             HHHHHHHhc--CCCEEEEEecccccCCc-CC----HHHHHHHHHHcCCEEEEECcccccCcCCCCC-chHHHHcCCCCCC
Confidence            677777752  34789999999988554 44    899999999999999999998  67899997 667778887 788


Q ss_pred             EE----EecccccCCcceeEEEe-cHHHHHhchh----------------------hh-----hHHHHHHHHHHHHHhc-
Q psy11784        155 II----TVGKPMGNGMPIGAVIT-SRKIAESLNC----------------------LD-----DNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       155 iv----~~sK~l~~G~p~gav~~-~~~i~~~~~~----------------------l~-----~~~~~~~~l~~~L~~~-  201 (284)
                      .+    ++||+++++  .|+++. ++++.+.+..                      ++     .+.++.+++++.++.+ 
T Consensus       242 ~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~  319 (402)
T PRK07505        242 RTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFD  319 (402)
T ss_pred             CeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            54    799999853  255554 6777665432                      11     1223344444444322 


Q ss_pred             ---------cCcee-EEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 ---------LHIFW-CLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 ---------~G~~~-~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                               .++++ .+.+ +....+.++.+.|+++||++.+...     ..++|||+|++.+|++|+++++++|+++++
T Consensus       320 ~~~~~~~~g~~~~i~~~~~-~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~  398 (402)
T PRK07505        320 SLIPTEQSGSFLPIRLIYI-GDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILD  398 (402)
T ss_pred             HHHHhcCCCCCCCEEEEEe-CCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHH
Confidence                     23333 2222 2223567899999999999987521     236899999999999999999999998875


Q ss_pred             H
Q psy11784        267 S  267 (284)
Q Consensus       267 ~  267 (284)
                      +
T Consensus       399 ~  399 (402)
T PRK07505        399 E  399 (402)
T ss_pred             h
Confidence            4

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.93  E-value=1.5e-24  Score=201.80  Aligned_cols=229  Identities=17%  Similarity=0.231  Sum_probs=168.3

Q ss_pred             CcHHHHHHH-HHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQ-LARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~Alk-lAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      ++||++|++ +++.+++  .+|.+...|||.+......++..          ...+|        +++         .+.
T Consensus       115 ~~An~~ai~~l~~~~~g--~~I~~~~~~H~s~~~~~~~~g~~----------~~~~~--------~~d---------~~~  165 (406)
T PRK13393        115 YVSNWAALSTLGSRLPG--CVILSDELNHASMIEGIRHSRAE----------KRIFR--------HND---------PAD  165 (406)
T ss_pred             HHHHHHHHHHhhcCCCC--CEEEEccchhHHHHHHHHHcCCe----------EEEeC--------CCC---------HHH
Confidence            478999999 6776644  57888899999876655433211          11222        222         456


Q ss_pred             HHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cC-ccccCccccccccCCC--Cc
Q psy11784         80 ARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GM-GRSGSHFWAFQTQGAV--PD  154 (284)
Q Consensus        80 l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~-gr~G~~~~a~~~~g~~--pD  154 (284)
                      +++.++... +.+++|++|++++++|.+.+    +++|.++|++||+++|+||+|+ |+ |++|. ++ .++.++.  +|
T Consensus       166 l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~-g~-~~~~~~~~~~~  239 (406)
T PRK13393        166 LERKLSDLDPHRPKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGG-GI-AEREGLADRLT  239 (406)
T ss_pred             HHHHHHhccCCCCEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-ch-hhhcCCCCCCe
Confidence            677776432 35789999999999999988    9999999999999999999998 76 88886 44 3666665  57


Q ss_pred             EE--EecccccC-CcceeEEEecHHHHHhchh----------------------h----------hhHHHHHHHHHHHHH
Q psy11784        155 II--TVGKPMGN-GMPIGAVITSRKIAESLNC----------------------L----------DDNRPSGKYLVRPLG  199 (284)
Q Consensus       155 iv--~~sK~l~~-G~p~gav~~~~~i~~~~~~----------------------l----------~~~~~~~~~l~~~L~  199 (284)
                      ++  +|||+++. |   |++++++++++.+..                      +          ++++++++++++.|+
T Consensus       240 i~~~tlsKa~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~  316 (406)
T PRK13393        240 IIEGTLAKAFGVMG---GYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLD  316 (406)
T ss_pred             EEEEeCchhhcccC---ceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence            77  99999984 3   677778777665432                      1          234567788888887


Q ss_pred             hc-------cCceeEEEEecccHHHHHHHHHHHH-CCcEEeecC----C-CCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        200 IN-------LHIFWCLILLSITYYLYRYTRRMKE-AKIIVANEG----E-YGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       200 ~~-------~G~~~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~----~-~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ++       .|.++.+.+ ++...+..+.+.|++ +||++.+..    + +.+++|++|++.+|++|+|+++++|+++++
T Consensus       317 ~~g~~~~~~~~~i~~v~~-~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~  395 (406)
T PRK13393        317 KAGIPHLPNPSHIVPVMV-GDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWA  395 (406)
T ss_pred             HcCCCcCCCCCCeEEEEe-CCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            64       455666654 333456789999987 599998642    1 237899999999999999999999999887


Q ss_pred             HH
Q psy11784        267 SL  268 (284)
Q Consensus       267 ~~  268 (284)
                      ++
T Consensus       396 ~~  397 (406)
T PRK13393        396 RL  397 (406)
T ss_pred             hc
Confidence            64

>PLN02822 serine palmitoyltransferase

Probab=99.92  E-value=1.5e-23  Score=198.53  Aligned_cols=223  Identities=20%  Similarity=0.246  Sum_probs=162.6

Q ss_pred             HHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHHHHHHhc---
Q psy11784         11 ARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH---   87 (284)
Q Consensus        11 Ar~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---   87 (284)
                      .+.+++|..++.+...||+.+.....+++..          +.+++        +++         .++++..+++.   
T Consensus       186 i~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~----------~~~~~--------~nd---------~~~l~~~l~~~~~~  238 (481)
T PLN02822        186 IPAFCKKGDIIVADEGVHWGIQNGLYLSRST----------IVYFK--------HND---------MESLRNTLEKLTAE  238 (481)
T ss_pred             HHHhCCCCCEEEEeCCccHHHHHHHHHcCCe----------EEEEC--------CCC---------HHHHHHHHHHHhhh
Confidence            3466788888888899998775544443211          11222        332         23344444311   


Q ss_pred             ---CCCe-eEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc--cCccccCccccccccCC---CCcEEE-
Q psy11784         88 ---RDNI-ATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC--GMGRSGSHFWAFQTQGA---VPDIIT-  157 (284)
Q Consensus        88 ---~~~v-aavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--G~gr~G~~~~a~~~~g~---~pDiv~-  157 (284)
                         .+.+ ++||+|+++++.|.+.+    |++|+++|++||++||+||+|+  .+|++|.  +..+++++   .||+++ 
T Consensus       239 ~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~--G~~e~~~v~~~~~dii~~  312 (481)
T PLN02822        239 NKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGR--GLSEHFGVPIEKIDIITA  312 (481)
T ss_pred             hcccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC--ChHHHcCCCCCCCeEEEe
Confidence               1234 89999999999999888    9999999999999999999998  4688886  36788888   789987 


Q ss_pred             -ecccccC-CcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        158 -VGKPMGN-GMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       158 -~sK~l~~-G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                       |||+++. |   |++++++++++.+..                                .++++++++++++.|++.  
T Consensus       313 s~sKalg~~G---G~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g  389 (481)
T PLN02822        313 AMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPG  389 (481)
T ss_pred             cchhhhhhCC---eEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Confidence             7799972 3   788899999887653                                236778889999999874  


Q ss_pred             -------cCceeEEEEec-------ccHHHHHHHHHHH-HCCcEEeecCC--C-----CCEEEEEcCCCCCHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLS-------ITYYLYRYTRRMK-EAKIIVANEGE--Y-----GNVLLFLPAMCLTTENVLFIVS  259 (284)
Q Consensus       202 -------~G~~~~i~~~~-------~~~~~~~~~~~l~-~~Gv~~~~~~~--~-----~~~lr~~p~l~~t~~~id~~~~  259 (284)
                             .+.++.+.+..       +.....++++.|+ ++||++.+..+  +     ...+|++.+..+|++||+++++
T Consensus       390 ~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~  469 (481)
T PLN02822        390 LSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASE  469 (481)
T ss_pred             cccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHH
Confidence                   23344455531       1123568999998 88999997522  1     2469999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy11784        260 TLNRIFTSLQ  269 (284)
Q Consensus       260 ~l~~~l~~~~  269 (284)
                      +|++++.++.
T Consensus       470 ~l~~~~~~~~  479 (481)
T PLN02822        470 SLKRVAASVL  479 (481)
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.92  E-value=2.9e-23  Score=192.91  Aligned_cols=231  Identities=18%  Similarity=0.195  Sum_probs=164.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++||+.|+++++.+. +..++.....||+.+......++..          ....+        +++         .+++
T Consensus       115 ~~an~~ai~~l~~~~-~~~~v~~~~~~h~s~~~~~~~~g~~----------~~~~~--------~~d---------~~~l  166 (402)
T TIGR01821       115 YVANDATLATLAKII-PGCVIFSDELNHASMIEGIRHSGAE----------KFIFR--------HND---------VAHL  166 (402)
T ss_pred             HHHHHHHHHHhhCCC-CCCEEEEcchHhHHHHHHHHHcCCe----------EEEEC--------CCC---------HHHH
Confidence            478899999887542 3456666777998765444332211          01111        222         5667


Q ss_pred             HHHHHhcCC-CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCccccccccCC--CCcE
Q psy11784         81 RNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQGA--VPDI  155 (284)
Q Consensus        81 ~~~i~~~~~-~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~g~--~pDi  155 (284)
                      +++++...+ .+++|++|+++++.|.+.+    +++|+++|++||++||+||+|+ | +|+.|. + ..++.++  .||+
T Consensus       167 ~~~l~~~~~~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~-g-~~~~~~~~~~~di  240 (402)
T TIGR01821       167 EKLLQSVDPNRPKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGG-G-IAERDGLMHRIDI  240 (402)
T ss_pred             HHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCC-c-cchhccCCCCCeE
Confidence            777764433 4789999999999999887    9999999999999999999998 5 366665 2 2355565  4788


Q ss_pred             E--EecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        156 I--TVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       156 v--~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      +  ||||+++.  +.|++++++++++.+..                                .++.+++++++++.|+++
T Consensus       241 v~~t~sKa~g~--~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (402)
T TIGR01821       241 IEGTLAKAFGV--VGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL  318 (402)
T ss_pred             EEEechhhhcc--CCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            7  99999984  12678888888776532                                113456777888888764


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHHH-CCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMKE-AKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                             .+.++.+.+ +....+..+++.|++ +||++.+..+     +.+++|++|++.+|++|+|+++++|+++++++
T Consensus       319 g~~~~~~~~~i~~i~~-~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  397 (402)
T TIGR01821       319 GIPVIPNPSHIVPVII-GDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL  397 (402)
T ss_pred             CCCcCCCCCCEEEEEe-CCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence                   344555554 333456788899875 5999986421     23689999999999999999999999988764

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.92  E-value=3.4e-23  Score=192.73  Aligned_cols=183  Identities=18%  Similarity=0.226  Sum_probs=141.1

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCccccccccCC--
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQGA--  151 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~g~--  151 (284)
                      .++++++++... +++++|++|+++++.|.+.+    +++|+++|++||++||+||+|+ | ||++|. ++ .++.++  
T Consensus       164 ~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~-g~-~~~~~~~~  237 (407)
T PRK09064        164 VAHLEELLAAADPDRPKLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGG-GI-AERDGLMD  237 (407)
T ss_pred             HHHHHHHHHhccCCCCeEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCC-Ch-HHhcCCCC
Confidence            577788876433 45889999999999999887    9999999999999999999998 7 588886 43 456665  


Q ss_pred             CCcEE--EecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHH
Q psy11784        152 VPDII--TVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRP  197 (284)
Q Consensus       152 ~pDiv--~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~  197 (284)
                      .||++  ||||++|.  +.|++++++++++.+..                                .++++++++++.+.
T Consensus       238 ~~div~~t~sKa~g~--~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~  315 (407)
T PRK09064        238 RIDIIEGTLAKAFGV--MGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAA  315 (407)
T ss_pred             CCeEEEEecchhhhc--cCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            57888  99999973  12778888888775432                                23566788888888


Q ss_pred             HHhc-------cCceeEEEEecccHHHHHHHHHHHH-CCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        198 LGIN-------LHIFWCLILLSITYYLYRYTRRMKE-AKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       198 L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      |+++       .+.++.+.+ ++...+..+.+.|++ +||++.+..+     +.+++|++|++.+|++|++++++.|+++
T Consensus       316 L~~~g~~~~~~~~~iv~i~~-~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~  394 (407)
T PRK09064        316 LDAAGIPVMPNESHIVPVMV-GDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEV  394 (407)
T ss_pred             HHHcCCCCCCCCCCEEEEEe-CCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            8874       233445544 333456789998875 5999986432     2368999999999999999999999999


Q ss_pred             HHHH
Q psy11784        265 FTSL  268 (284)
Q Consensus       265 l~~~  268 (284)
                      ++++
T Consensus       395 ~~~~  398 (407)
T PRK09064        395 WARL  398 (407)
T ss_pred             HHHc
Confidence            8765

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.92  E-value=2.1e-23  Score=190.11  Aligned_cols=228  Identities=18%  Similarity=0.263  Sum_probs=171.6

Q ss_pred             CCccEEEEcCCCcccchhhhcCCCCcccc------cCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHHHHHHhcC-
Q psy11784         16 GRQNIVVVDAAYHGTVNLLLDISPRAFML------SSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR-   88 (284)
Q Consensus        16 ~r~~il~~~~~yHG~t~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-   88 (284)
                      |+...|.|..||+.+.....++.......      +.++.+++. .......++.|++         +++||+++++.. 
T Consensus        98 g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~r-ls~a~~~~f~HnD---------~~~Le~~l~~~~~  167 (388)
T COG0156          98 GAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIR-LSRAEVRRFKHND---------LDHLEALLEEARE  167 (388)
T ss_pred             CCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHH-hCCCcEEEecCCC---------HHHHHHHHHhhhc
Confidence            78899999999999988777665432111      122233333 3344556677876         799999998532 


Q ss_pred             -C-CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCccccccccCCCCc---E--EEec
Q psy11784         89 -D-NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQGAVPD---I--ITVG  159 (284)
Q Consensus        89 -~-~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~g~~pD---i--v~~s  159 (284)
                       . +-..|++|.|++|.|++.|    |++|.+||++||++|++||+|+ | +|..|.  +..+++|+.|+   |  .|||
T Consensus       168 ~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~Gr--G~~e~~g~~~~~vdi~~gTls  241 (388)
T COG0156         168 NGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHAVGVLGPNGR--GLAEHFGLEPEEVDIIVGTLG  241 (388)
T ss_pred             cCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEccccccccCCCCc--cHHHHhCCCCccceEEEEEch
Confidence             1 3578999999999999999    9999999999999999999997 4 466675  45678888755   3  4899


Q ss_pred             ccccC-CcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhccCc--
Q psy11784        160 KPMGN-GMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGINLHI--  204 (284)
Q Consensus       160 K~l~~-G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~~G~--  204 (284)
                      |++|+ |   |++.+++.+.+.+..                                .++++++..++++.++.. |+  
T Consensus       242 KAlGs~G---g~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~  317 (388)
T COG0156         242 KALGSSG---GYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL-GLVL  317 (388)
T ss_pred             hhhcccC---ceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCcc
Confidence            99995 6   889999999988766                                235666666776555542 22  


Q ss_pred             ------eeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        205 ------FWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       205 ------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                            ++.+.+ .++..+.++...|+++||++.+..+     +..+||++|+..||++||+.+++.|.++
T Consensus       318 ~~s~s~I~pv~~-gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         318 LPSESPIIPVIL-GDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             CCCCCCeeeeEe-CCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence                  223333 5667789999999999999986532     3479999999999999999999998764

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.91  E-value=3e-23  Score=193.28  Aligned_cols=187  Identities=13%  Similarity=0.141  Sum_probs=143.3

Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc--Ccc
Q psy11784         61 YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG--MGR  138 (284)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--~gr  138 (284)
                      ++++|++         +++|+++++...++.+.||+|+|++|.|+++|    |++|+++|++||++||+||+|+.  +|.
T Consensus       229 ~~f~HND---------~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~Gv~G~  295 (476)
T PLN02955        229 FVYRHCD---------MYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGTFVCGE  295 (476)
T ss_pred             EEeCCCC---------HHHHHHHHHhCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccCceecC
Confidence            3456776         89999999866666788999999999999998    99999999999999999999973  355


Q ss_pred             ccCccccccccCCCCcE----EEecccccCCcceeEEEecHHHHHhchh----------------------h--------
Q psy11784        139 SGSHFWAFQTQGAVPDI----ITVGKPMGNGMPIGAVITSRKIAESLNC----------------------L--------  184 (284)
Q Consensus       139 ~G~~~~a~~~~g~~pDi----v~~sK~l~~G~p~gav~~~~~i~~~~~~----------------------l--------  184 (284)
                      +|.  +..+++|+.||+    .||||++|.  ..|++++++++++.+..                      +        
T Consensus       296 ~G~--G~~e~~g~~~di~ii~~TLsKA~G~--~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~  371 (476)
T PLN02955        296 NGG--GVAEEFNCEADVDLCVGTLSKAAGC--HGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKW  371 (476)
T ss_pred             CCC--cHHHHhCCCCCCcEEEEeCccchhc--cCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHH
Confidence            554  466788988876    689999983  12678999988887764                      1        


Q ss_pred             --hhHHHHHHHHHHHHHhccCc-----eeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHH
Q psy11784        185 --DDNRPSGKYLVRPLGINLHI-----FWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTE  252 (284)
Q Consensus       185 --~~~~~~~~~l~~~L~~~~G~-----~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~  252 (284)
                        ++++++.++|++.    .|+     ++.+.+ ++...+..++++|+++|+++.+..+     +..++|++.+..||++
T Consensus       372 ~r~~L~~n~~~fr~~----~G~~~~sPI~pI~i-g~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~e  446 (476)
T PLN02955        372 RRKAIWERVKEFKAL----SGVDISSPIISLVV-GNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTE  446 (476)
T ss_pred             HHHHHHHHHHHHHHh----cCCCCCCCEEEEEe-CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHH
Confidence              1333333344332    232     333333 5667788999999999999985432     3458999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy11784        253 NVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       253 ~id~~~~~l~~~l~~~~  269 (284)
                      ||+.++++|.++.+.+.
T Consensus       447 dId~lv~~L~~~~~~~~  463 (476)
T PLN02955        447 DVKKLITALSSCLDFDN  463 (476)
T ss_pred             HHHHHHHHHHHHHhhhc
Confidence            99999999998877653

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.90  E-value=2.4e-22  Score=186.11  Aligned_cols=174  Identities=18%  Similarity=0.203  Sum_probs=134.9

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc--cCccccCccccccccCCCC----cEEEeccccc
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC--GMGRSGSHFWAFQTQGAVP----DIITVGKPMG  163 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--G~gr~G~~~~a~~~~g~~p----Div~~sK~l~  163 (284)
                      +...|++||+++++|.+++    +++++++|++||++||+||+|+  ++|++|.  ++++++|+.|    |++++|++-+
T Consensus       138 ~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~--g~~~~~g~~p~~~~Div~~slsk~  211 (392)
T PLN03227        138 QRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR--GSLEHAGLKPMVHAEIVTFSLENA  211 (392)
T ss_pred             CcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC--cHHHHcCCCCCCCceEEEeechhh
Confidence            4788999999999999888    9999999999999999999998  4566665  5789999999    9998773322


Q ss_pred             CCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc----------
Q psy11784        164 NGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN----------  201 (284)
Q Consensus       164 ~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~----------  201 (284)
                      .|.+.|++++++++++.+..                                ++++++++++|++.|++.          
T Consensus       212 ~g~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg  291 (392)
T PLN03227        212 FGSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRN  291 (392)
T ss_pred             hhccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence            23344677789888765532                                346788999999999752          


Q ss_pred             --------cCceeEEEEecccH--------HHHHHHHHHHHCCcEEeecCC---------CCCEEEEEcCCCCCHHHHHH
Q psy11784        202 --------LHIFWCLILLSITY--------YLYRYTRRMKEAKIIVANEGE---------YGNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       202 --------~G~~~~i~~~~~~~--------~~~~~~~~l~~~Gv~~~~~~~---------~~~~lr~~p~l~~t~~~id~  256 (284)
                              .|.++++++.+...        ....+++.|+++|+++.+.+.         -...||++.+..+|++|||+
T Consensus       292 ~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~  371 (392)
T PLN03227        292 RLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDK  371 (392)
T ss_pred             ccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHH
Confidence                    14468888842111        235899999999999864221         13567888888889999999


Q ss_pred             HHHHHHHHHHHHh
Q psy11784        257 IVSTLNRIFTSLQ  269 (284)
Q Consensus       257 ~~~~l~~~l~~~~  269 (284)
                      ++++|+++++++.
T Consensus       372 ~~~~l~~~~~~~~  384 (392)
T PLN03227        372 LLTVLGEAVEAIL  384 (392)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998874

>KOG1359|consensus

Probab=99.86  E-value=3e-20  Score=159.08  Aligned_cols=235  Identities=14%  Similarity=0.197  Sum_probs=165.4

Q ss_pred             HHHHHccCCccEEEEcCCCcccchhhhcCCCCcccc------cCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHHH
Q psy11784          9 QLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFML------SSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARN   82 (284)
Q Consensus         9 klAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (284)
                      |+|+. ++|...|.+..+|..+....-.+-..+...      +.+..+++..     +.|+.+.+         +-+++.
T Consensus       120 kiAqf-h~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirL-----ckry~h~d---------v~~l~~  184 (417)
T KOG1359|consen  120 KIAQF-HGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRL-----CKRYRHVD---------VFDLEH  184 (417)
T ss_pred             HHHHH-hCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHH-----Hhhhccch---------hHHHHH
Confidence            45554 378888888888888865554432211110      1122222211     11222222         445554


Q ss_pred             HHH-hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cC-ccccCccccccccCC--CCcEE-
Q psy11784         83 IME-AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GM-GRSGSHFWAFQTQGA--VPDII-  156 (284)
Q Consensus        83 ~i~-~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~-gr~G~~~~a~~~~g~--~pDiv-  156 (284)
                      -+. ..+.....|+.|.+++|.|++.|    |++|.+|+++||+||.+||.|. || |.+|.  +..+.+|+  .+|++ 
T Consensus       185 ~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGr--Gt~E~~~vm~~vdiin  258 (417)
T KOG1359|consen  185 CLISACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGR--GTAEEFGVMGDVDIIN  258 (417)
T ss_pred             HHHHhhhheEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCC--ChHHHhCCCCcceehh
Confidence            443 33345889999999999999999    9999999999999999999996 54 77885  45677885  57776 


Q ss_pred             -EecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhccC
Q psy11784        157 -TVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGINLH  203 (284)
Q Consensus       157 -~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~~G  203 (284)
                       |+||++||. .-|++.+++.+.+.+++                                +++.+.+-+++++.+... |
T Consensus       259 sTLgKAlGga-~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~a-G  336 (417)
T KOG1359|consen  259 STLGKALGGA-SGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAA-G  336 (417)
T ss_pred             hhhhhhhcCC-CCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-C
Confidence             899999851 22788889988887765                                346677778888887763 3


Q ss_pred             cee--------EEEEecccHHHHHHHHHHHHCCcEEeecC-----CCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        204 IFW--------CLILLSITYYLYRYTRRMKEAKIIVANEG-----EYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       204 ~~~--------~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +-+        .+-+ .+.+.+.+++++|+++|+++...+     ++..+||+..+..||++|||+++++|.++.+.
T Consensus       337 ftIsg~~hPI~pv~l-Gda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~  412 (417)
T KOG1359|consen  337 FTISGASHPICPVML-GDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRF  412 (417)
T ss_pred             ceecCCCCCccceec-ccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHh
Confidence            322        2222 567788999999999999986332     25579999999999999999999999888764

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.85  E-value=9.5e-20  Score=169.81  Aligned_cols=183  Identities=18%  Similarity=0.231  Sum_probs=134.2

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cC-ccccCccccccccCC--
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GM-GRSGSHFWAFQTQGA--  151 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~-gr~G~~~~a~~~~g~--  151 (284)
                      .+.+++.++... +++.+|++|+++++.|.+.+    +++|.++|++||+++|+||+|+ |+ |+.|. ++ .++.++  
T Consensus       164 ~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~-g~-~~~~~~~~  237 (410)
T PRK13392        164 LADLEEQLASVDPDRPKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGG-GI-AERDGLMD  237 (410)
T ss_pred             HHHHHHHHHhccCCCCEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCC-ch-hhhccCCC
Confidence            345566665333 45889999999999998887    9999999999999999999998 54 66665 33 344444  


Q ss_pred             CCcEE--EecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHH
Q psy11784        152 VPDII--TVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRP  197 (284)
Q Consensus       152 ~pDiv--~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~  197 (284)
                      .+|++  ++||+++.  +.|++++++++++.+..                                .++++++.+++++.
T Consensus       238 ~~div~~tlsK~~g~--~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~  315 (410)
T PRK13392        238 RIDMIQGTLAKAFGC--LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAK  315 (410)
T ss_pred             CCcEEEEEChHhhhc--ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            46776  89999974  22777788888774432                                12456777788888


Q ss_pred             HHhc-------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        198 LGIN-------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       198 L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      |+++       .+.++.+.+ +......++++.|+ ++||++.+..+     +..++|+++++.+|++|+|+++++|+++
T Consensus       316 L~~~g~~~~~~~~~~~~i~~-~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~  394 (410)
T PRK13392        316 LNANGIPVMPSPSHIVPVMV-GDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAI  394 (410)
T ss_pred             HHHcCCCCCCCCCCEEEEEe-CCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            8764       222333433 33335678999887 67999986421     2368999999999999999999999988


Q ss_pred             HHHH
Q psy11784        265 FTSL  268 (284)
Q Consensus       265 l~~~  268 (284)
                      ++++
T Consensus       395 ~~~~  398 (410)
T PRK13392        395 WDRL  398 (410)
T ss_pred             HHHc
Confidence            7654

>PRK07179 hypothetical protein; Provisional

Probab=99.84  E-value=3.9e-19  Score=165.56  Aligned_cols=181  Identities=17%  Similarity=0.203  Sum_probs=138.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc--CccccCccccccccCCC--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAV--  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--~gr~G~~~~a~~~~g~~--  152 (284)
                      .+++++.++.  .+.++|++|+++++.|.+.+    +++|.++|++||++||+||+|+.  +|++|. . ....+++.  
T Consensus       170 ~~~l~~~l~~--~~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~-g-~~~~~~~~~~  241 (407)
T PRK07179        170 VDHLRRQIER--HGPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGA-G-LVAELGLTSR  241 (407)
T ss_pred             HHHHHHHHHh--cCCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCC-c-hHHhcCCCCC
Confidence            6778888863  23678999999999999888    99999999999999999999983  355664 2 23456664  


Q ss_pred             CcEEE--ecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHH
Q psy11784        153 PDIIT--VGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       153 pDiv~--~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L  198 (284)
                      +|+++  ++|++++  ++|++++++++++.+..                                .++++++++++++.|
T Consensus       242 vdi~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L  319 (407)
T PRK07179        242 VHFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGL  319 (407)
T ss_pred             CCEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            48764  6899975  58999999888766531                                236677788888888


Q ss_pred             Hhc------cCceeEEEEecccHHHHHHHHHHHHCCcEEe----ecCC-CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        199 GIN------LHIFWCLILLSITYYLYRYTRRMKEAKIIVA----NEGE-YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       199 ~~~------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~----~~~~-~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +++      .+.++++.+ +.......+.+.|.++||++.    |..+ ..+.+||+++..+|++|+++++++|++++++
T Consensus       320 ~~~g~~v~~~~~i~~l~~-~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~  398 (407)
T PRK07179        320 SELGYNIRSESQIIALET-GSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDE  398 (407)
T ss_pred             HHcCCCCCCCCCEEEEEe-CCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence            875      345666665 333356778889999999843    2211 2479999999999999999999999998876


Q ss_pred             H
Q psy11784        268 L  268 (284)
Q Consensus       268 ~  268 (284)
                      .
T Consensus       399 ~  399 (407)
T PRK07179        399 V  399 (407)
T ss_pred             h
Confidence            4

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.84  E-value=9.9e-19  Score=161.33  Aligned_cols=182  Identities=15%  Similarity=0.214  Sum_probs=131.7

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCccccccccCCCC
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~g~~p  153 (284)
                      .+++++.+.... ..+++|+++++++..|.+.+    +++|.++|++||+++|+||+|+ | ++++|.  +...++++.+
T Consensus       149 ~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~  222 (385)
T TIGR01825       149 MDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR--GTVHHFGLED  222 (385)
T ss_pred             HHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC--ccHhhcCCCc
Confidence            456677666333 35889999999999898776    8999999999999999999996 3 455553  2334455555


Q ss_pred             c----EEEecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHH
Q psy11784        154 D----IITVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRP  197 (284)
Q Consensus       154 D----iv~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~  197 (284)
                      |    +.++||+++.  +.|++++++++++.+..                                .+++.++++++.+.
T Consensus       223 ~~~i~~~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~  300 (385)
T TIGR01825       223 KVDIQVGTLSKAIGV--VGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAG  300 (385)
T ss_pred             CCcEEEEeccHHhhc--CCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            5    3689999963  44788888888765532                                22456677778887


Q ss_pred             HHhc-------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-----CCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        198 LGIN-------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-----EYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       198 L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      |+++       .+.++++.+ +.......+++.|+++||++.+..     .+.+++|++|++.+|++++++++++|++++
T Consensus       301 L~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~  379 (385)
T TIGR01825       301 LGKLGYDTGGSETPITPVVI-GDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVG  379 (385)
T ss_pred             HHHcCCCCCCCCCCEEEEEE-CCHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            8764       123444443 222346789999999999985321     123789999999999999999999999988


Q ss_pred             HH
Q psy11784        266 TS  267 (284)
Q Consensus       266 ~~  267 (284)
                      ++
T Consensus       380 ~~  381 (385)
T TIGR01825       380 KE  381 (385)
T ss_pred             HH
Confidence            65

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.83  E-value=1.1e-18  Score=160.67  Aligned_cols=182  Identities=19%  Similarity=0.203  Sum_probs=131.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+.+++.++..++..++++++++++..|...+    +++|.++|++||+++|+||+|+ | ++++|..+.........+|
T Consensus       155 ~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~  230 (385)
T PRK05958        155 VDALEALLAKWRAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPD  230 (385)
T ss_pred             HHHHHHHHHhccCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCc
Confidence            56778877643334788999999998887666    9999999999999999999995 3 4555541111111223566


Q ss_pred             ---EEEecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHH
Q psy11784        155 ---IITVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       155 ---iv~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~  199 (284)
                         +.++||+++.  +.|++++++++++.+..                                .+++.++++++.+.|+
T Consensus       231 ~i~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~  308 (385)
T PRK05958        231 VILVGTLGKALGS--SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLR  308 (385)
T ss_pred             eEEEEechhhccc--CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence               5688999974  33888888887765432                                1255566677777777


Q ss_pred             hc-------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        200 IN-------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       200 ~~-------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      ++       .|.++.+.+ +......++++.|+++||++.+.+.     +.+++|++|+..+|++++++++++|++++
T Consensus       309 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        309 ALGFQLMDSQSAIQPLIV-GDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             HcCCCcCCCCCCEEEEEe-CCHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence            63       455666666 3334567899999999999986322     23689999999999999999999998753

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.80  E-value=1.8e-17  Score=152.57  Aligned_cols=182  Identities=18%  Similarity=0.225  Sum_probs=126.7

Q ss_pred             HHHHHHHHHhcC---CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCcccccccc--
Q psy11784         77 AQAARNIMEAHR---DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQ--  149 (284)
Q Consensus        77 ~~~l~~~i~~~~---~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~--  149 (284)
                      +++|+++++...   +...+|++++++++.|.+.|    +++|.++|+++|++|++||+|+ | +|++|. ++. ..+  
T Consensus       127 ~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~-g~~-~~~~~  200 (370)
T PRK05937        127 LDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGK-GFC-HSLGY  200 (370)
T ss_pred             HHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-chH-HhhCC
Confidence            677888887322   23557889999999999998    9999999999999999999998 5 677765 222 122  


Q ss_pred             -CCCCcEEEecccccC-CcceeEEEecHHHHHhchh----------------------hh-----------hHHHHHHHH
Q psy11784        150 -GAVPDIITVGKPMGN-GMPIGAVITSRKIAESLNC----------------------LD-----------DNRPSGKYL  194 (284)
Q Consensus       150 -g~~pDiv~~sK~l~~-G~p~gav~~~~~i~~~~~~----------------------l~-----------~~~~~~~~l  194 (284)
                       +..+|+.|+||++|. |   +++++.+++.+.+..                      ++           ++++..+++
T Consensus       201 ~~~~~~~~tlsK~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l  277 (370)
T PRK05937        201 ENFYAVLVTYSKALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYF  277 (370)
T ss_pred             CCCcEEEEechhhhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence             233678999999975 4   556666665443321                      11           233333444


Q ss_pred             HHHHHhc-cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-CCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        195 VRPLGIN-LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-EYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       195 ~~~L~~~-~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      .+.|... .+....+.+ +. .....+.+.|.++||++.... +..+.+|++++..+|++|||.+++.|+++++++.
T Consensus       278 ~~~l~~~~~~~~~~i~~-~~-~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~  352 (370)
T PRK05937        278 AQKFSSAAPGCVQPIFL-PG-ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQ  352 (370)
T ss_pred             HHhcCCCCCCCEEEEEe-CC-hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            4444321 233344444 22 235678888999999887432 2346899999999999999999999999988763

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.80  E-value=1e-17  Score=154.97  Aligned_cols=184  Identities=21%  Similarity=0.267  Sum_probs=133.0

Q ss_pred             HHHHHHHHHhc---CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cC-ccccCccccccccCC
Q psy11784         77 AQAARNIMEAH---RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GM-GRSGSHFWAFQTQGA  151 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~-gr~G~~~~a~~~~g~  151 (284)
                      .+++++.+...   +.++..|++++++++.|.+.+    +++|.++|++||++||+||+|. |+ |..|.  ......++
T Consensus       154 ~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~--~~~~~~~~  227 (393)
T TIGR01822       154 MADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGR--GSHELCGV  227 (393)
T ss_pred             HHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCC--chHHhcCC
Confidence            56777777632   225789999999999998877    9999999999999999999994 43 33443  12233444


Q ss_pred             --CCcEE--EecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHH
Q psy11784        152 --VPDII--TVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       152 --~pDiv--~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~  195 (284)
                        .+|++  +++|+++| +++|++++++++++.+..                                .++++++.+++.
T Consensus       228 ~~~~di~~~s~sK~l~g-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~  306 (393)
T TIGR01822       228 MGRVDIITGTLGKALGG-ASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFR  306 (393)
T ss_pred             CCCCeEEEEEChHHhhC-CCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence              36777  78999974 688999999988875532                                124566677777


Q ss_pred             HHHHhc-------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-----CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        196 RPLGIN-------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-----EYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       196 ~~L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      +.|++.       .+.++.+.+ ++......+++.|.++||++....     ....++|+++++.+|++||++++++|.+
T Consensus       307 ~~L~~~g~~~~~~~~~~~~i~~-~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~  385 (393)
T TIGR01822       307 ERMEAAGFDIKPADHPIIPVML-YDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTR  385 (393)
T ss_pred             HHHHHcCCCCCCCCCCEEEEEe-CCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            777753       122334433 233456789999999999987321     1235799999999999999999999998


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      +++++
T Consensus       386 ~~~~~  390 (393)
T TIGR01822       386 IGREL  390 (393)
T ss_pred             HHHHh
Confidence            87654

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.80  E-value=3.5e-17  Score=151.38  Aligned_cols=184  Identities=17%  Similarity=0.234  Sum_probs=132.4

Q ss_pred             HHHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cC-ccccCccccccccCC
Q psy11784         77 AQAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GM-GRSGSHFWAFQTQGA  151 (284)
Q Consensus        77 ~~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~-gr~G~~~~a~~~~g~  151 (284)
                      .+++++.++.   ...++++|+++++++..|...+    +++|.++|++||++||+||+|+ |+ ++.|.  +.....++
T Consensus       158 ~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~--~~~~~~~~  231 (397)
T PRK06939        158 MADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGR--GTVEHFGV  231 (397)
T ss_pred             HHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC--CHHHHcCC
Confidence            4666666653   2225889999999998887555    9999999999999999999995 53 33443  12333454


Q ss_pred             --CCcEE--EecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHH
Q psy11784        152 --VPDII--TVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       152 --~pDiv--~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~  195 (284)
                        .+|++  ++||+++| .++|++++++++++.+..                                .++++++.+++.
T Consensus       232 ~~~~~i~~~S~sK~~~g-~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~  310 (397)
T PRK06939        232 MDRVDIITGTLGKALGG-ASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFR  310 (397)
T ss_pred             CCCCcEEEEECHHHhCc-cCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence              45777  88999965 488999999888776532                                124555666677


Q ss_pred             HHHHhc-------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        196 RPLGIN-------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       196 ~~L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      +.|+++       .+.++.+.+ +......++++.|.++||.+.+...     ..+.+|+.+++.++++++++++++|.+
T Consensus       311 ~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~  389 (397)
T PRK06939        311 EGMTAAGFTLGPGEHPIIPVML-GDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEK  389 (397)
T ss_pred             HHHHHcCCCcCCCCCCEEEEEE-CCHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            777653       233443333 2333567899999999999875321     236899999999999999999999999


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      +++++
T Consensus       390 ~~~~~  394 (397)
T PRK06939        390 VGKEL  394 (397)
T ss_pred             HHHHh
Confidence            88664

>PLN02483 serine palmitoyltransferase

Probab=99.79  E-value=1.1e-17  Score=158.93  Aligned_cols=170  Identities=16%  Similarity=0.224  Sum_probs=128.2

Q ss_pred             eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCccccccccCCCC---cEE--Eeccccc
Q psy11784         91 IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQGAVP---DII--TVGKPMG  163 (284)
Q Consensus        91 vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~g~~p---Div--~~sK~l~  163 (284)
                      -..|++|++.++.|.+.+    +++|.++|++||++||+||+|+ | +|++|.  +..+++++.|   |++  +|||+++
T Consensus       241 k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~--g~~~~~~v~~~~~dI~~~SfSKs~g  314 (489)
T PLN02483        241 KIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGR--GVCELLGVDPADVDIMMGTFTKSFG  314 (489)
T ss_pred             eEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCC--chHHhcCCCcccCcEEEEecchhcc
Confidence            358889999999998887    9999999999999999999997 2 466775  3456667654   666  8999997


Q ss_pred             CCcceeEEEecHHHHHhchh----------------------h----------------hhHHHHHHHHHHHHHhc----
Q psy11784        164 NGMPIGAVITSRKIAESLNC----------------------L----------------DDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       164 ~G~p~gav~~~~~i~~~~~~----------------------l----------------~~~~~~~~~l~~~L~~~----  201 (284)
                      .  +.|++++++++++.+..                      +                ++++++.+++++.|+++    
T Consensus       315 ~--~GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~v  392 (489)
T PLN02483        315 S--CGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEV  392 (489)
T ss_pred             c--CceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence            4  23888889888876643                      1                13445566777777764    


Q ss_pred             c----CceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        202 L----HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       202 ~----G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      .    +.+.++.+ ........+++.|+++||.+.+.++     ..+.+||+++..+|++||++++++|+++++.+.
T Consensus       393 ~~~~~sp~~~l~l-~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~  468 (489)
T PLN02483        393 LGDNDSPVMPIML-YNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVG  468 (489)
T ss_pred             cCCCCCCEEEEEE-CCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            1    22333333 2334566899999999999986432     126899999999999999999999999988764

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.76  E-value=2e-16  Score=144.13  Aligned_cols=178  Identities=15%  Similarity=0.168  Sum_probs=128.4

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc-cccccccCCCCc
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH-FWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~-~~a~~~~g~~pD  154 (284)
                      .+.+++.++... .++++|+++++.+..|...+    +++|.++|++||+++|+||+|+ +|..+.. ......+++.||
T Consensus       132 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~  206 (360)
T TIGR00858       132 VEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPE  206 (360)
T ss_pred             HHHHHHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCcc
Confidence            567788776433 34789999999988887766    9999999999999999999997 3333311 112334556555


Q ss_pred             -----EEEecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHH
Q psy11784        155 -----IITVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRP  197 (284)
Q Consensus       155 -----iv~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~  197 (284)
                           +.++||+++.  +.|++++++++++.+..                                .++++++.+++.+.
T Consensus       207 ~~~i~i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~  284 (360)
T TIGR00858       207 PVDIQVGTLSKALGS--YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAG  284 (360)
T ss_pred             CCcEEEEechhhhhc--cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence                 5689999975  33888888887765432                                22566667777777


Q ss_pred             HHhc-------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        198 LGIN-------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       198 L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      |+++       .|.++++.+ +......++++.|.++||++.+...     ..+.+|++++..+|++|+++++++|+
T Consensus       285 L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       285 LEALGFTLMPSCTPIVPVII-GDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             HHHcCCccCCCCCCEEEEEe-CCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            7664       344666665 3333567899999999999975322     23689999999999999999998863

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.75  E-value=2.2e-16  Score=146.27  Aligned_cols=228  Identities=17%  Similarity=0.157  Sum_probs=148.3

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      ++.+.+++.++...++...|.+..+|||.+.......+....      ..+..+|.++.  +  ..+        .++++
T Consensus        92 ~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g------~~~~~v~~~~~--~--~~d--------~~~l~  153 (398)
T cd00613          92 AAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLG------IEVVEVPSDEG--G--TVD--------LEALK  153 (398)
T ss_pred             HHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCC------cEEEEeccCCC--C--CcC--------HHHHH
Confidence            456788888887654455666788899998776655432110      01223333221  0  111        56677


Q ss_pred             HHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE--ec
Q psy11784         82 NIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT--VG  159 (284)
Q Consensus        82 ~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~--~s  159 (284)
                      +.+.   +++++|++++.. ..|.+   .++|++|+++|++||+++|+|++|+.....+.    ...+  .+|+++  ++
T Consensus       154 ~~i~---~~t~~viv~~~~-~~G~~---~~~l~~i~~la~~~g~~livD~~~~~~~~~~~----~~~~--~~d~~~~s~~  220 (398)
T cd00613         154 EEVS---EEVAALMVQYPN-TLGVF---EDLIKEIADIAHSAGALVYVDGDNLNLTGLKP----PGEY--GADIVVGNLQ  220 (398)
T ss_pred             HhcC---CCeEEEEEECCC-CCcee---cchHHHHHHHHHhcCCEEEEEeccccccCCCC----hHHc--CCCEEEeecc
Confidence            6663   568999999864 56766   36789999999999999999998863211111    1112  378876  45


Q ss_pred             ccc---cC-CcceeEEEecHHHHHhc---------------------h---------h----------------------
Q psy11784        160 KPM---GN-GMPIGAVITSRKIAESL---------------------N---------C----------------------  183 (284)
Q Consensus       160 K~l---~~-G~p~gav~~~~~i~~~~---------------------~---------~----------------------  183 (284)
                      |.+   ++ |...|+++.++++.+.+                     .         .                      
T Consensus       221 K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~  300 (398)
T cd00613         221 KTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVY  300 (398)
T ss_pred             ccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHH
Confidence            665   33 45677888887776653                     0         0                      


Q ss_pred             ---------hhhHHHHHHHHHHHHHhcc------Ccee---EEEEecc--cHHHHHHHHHHHHCCcEEeecC-CCCCEEE
Q psy11784        184 ---------LDDNRPSGKYLVRPLGINL------HIFW---CLILLSI--TYYLYRYTRRMKEAKIIVANEG-EYGNVLL  242 (284)
Q Consensus       184 ---------l~~~~~~~~~l~~~L~~~~------G~~~---~i~~~~~--~~~~~~~~~~l~~~Gv~~~~~~-~~~~~lr  242 (284)
                               .++.++++++++++|+++.      +.+.   .+.+ +.  .....++++.|+++|+++.... ...+.+|
T Consensus       301 ~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lR  379 (398)
T cd00613         301 LGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRL-PPLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLM  379 (398)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEc-CCcchHHHHHHHHhhhhcCccccccccCCCCeEE
Confidence                     2367778888898888751      1111   2222 22  2357789999999999876421 1357999


Q ss_pred             EEcCCCCCHHHHHHHHHHH
Q psy11784        243 FLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       243 ~~p~l~~t~~~id~~~~~l  261 (284)
                      ++|++.+|++|||++++.|
T Consensus       380 is~~~~~t~edid~~~~~L  398 (398)
T cd00613         380 IEPTETETKEELDALLEAL  398 (398)
T ss_pred             EEcCCCCCHHHHHHHHHhC
Confidence            9999999999999998764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK07682 hypothetical protein; Validated

Probab=99.72  E-value=4.7e-16  Score=143.36  Aligned_cols=185  Identities=14%  Similarity=0.126  Sum_probs=128.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccCCCCc-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQGAVPD-  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g~~pD-  154 (284)
                      .+++++.+.   +++.++++...++..|. .++++.+++|.++|++|++++|+||+|..|...+. +... ...+..+. 
T Consensus       144 ~~~l~~~~~---~~~~~v~~~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~  218 (378)
T PRK07682        144 PAQIEAAIT---AKTKAILLCSPNNPTGA-VLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRERT  218 (378)
T ss_pred             HHHHHhhcC---cccEEEEEECCCCCcCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccCCE
Confidence            566776654   35666655544666665 66899999999999999999999999998755443 2111 11222222 


Q ss_pred             --EEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        155 --IITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 --iv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                        +.+|||.++ .|+++|++++++++++.+..                               .++++++.+++.+.|++
T Consensus       219 i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  298 (378)
T PRK07682        219 ILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNE  298 (378)
T ss_pred             EEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence              447899998 79999999999998887653                               11345556667777765


Q ss_pred             c--------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCC----CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGE----YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       201 ~--------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      .        .|+++++.+.+......++++.++ ++||.+.|+..    ..+++|++..  .+++++++++++|.+++++
T Consensus       299 ~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~  376 (378)
T PRK07682        299 IGLTCHVPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA--TSLEQLQEAMKRMKRFVEN  376 (378)
T ss_pred             CCCccCCCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence            4        234445554322234667888876 68999998643    2478999754  5799999999999998865


Q ss_pred             H
Q psy11784        268 L  268 (284)
Q Consensus       268 ~  268 (284)
                      +
T Consensus       377 ~  377 (378)
T PRK07682        377 K  377 (378)
T ss_pred             c
Confidence            4

>KOG1360|consensus

Probab=99.72  E-value=4.8e-16  Score=138.26  Aligned_cols=238  Identities=18%  Similarity=0.226  Sum_probs=164.7

Q ss_pred             HHHHccCCccEEEEcCCCcccc--hhhhcC--CC----CcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784         10 LARAYTGRQNIVVVDAAYHGTV--NLLLDI--SP----RAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus        10 lAr~~~~r~~il~~~~~yHG~t--~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      ||-. ++|...+.|..+|-.+-  ..+++-  .+    +....+.++..++.. +.-..+.+.||+         +++|+
T Consensus       225 LA~L-HqK~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrn-s~v~K~IFrHND---------~~hL~  293 (570)
T KOG1360|consen  225 LADL-HQKEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRN-SRVPKHIFRHND---------LDHLE  293 (570)
T ss_pred             HHHH-hcCcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhh-cCCcceeeccCC---------HHHHH
Confidence            3433 37889999999999974  333321  10    000111222223321 111233456676         89999


Q ss_pred             HHHHhcCCC-eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cC-ccccCccccccccCC--CCcEE
Q psy11784         82 NIMEAHRDN-IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GM-GRSGSHFWAFQTQGA--VPDII  156 (284)
Q Consensus        82 ~~i~~~~~~-vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~-gr~G~~~~a~~~~g~--~pDiv  156 (284)
                      +++++.+.. ...|-+|.|.+|.|.+.|    |++|++++++||++..+||||. |+ |-.|.  +.-++.|+  +.||+
T Consensus       294 ~lL~~~~~svPKivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHAVGlYG~rGa--GvgerdGvm~kvDiI  367 (570)
T KOG1360|consen  294 QLLQSSPKSVPKIVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHAVGLYGPRGA--GVGERDGVMHKVDII  367 (570)
T ss_pred             HHHHhCCCCCCceEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhhhccccCCCC--CccccCCcchhhhhc
Confidence            999976655 566779999999999999    9999999999999999999998 43 33332  33456676  45776


Q ss_pred             --EecccccC-CcceeEEEecHHHHHhchh-------------------hh---------------hHHHHHHHHHHHHH
Q psy11784        157 --TVGKPMGN-GMPIGAVITSRKIAESLNC-------------------LD---------------DNRPSGKYLVRPLG  199 (284)
Q Consensus       157 --~~sK~l~~-G~p~gav~~~~~i~~~~~~-------------------l~---------------~~~~~~~~l~~~L~  199 (284)
                        |+||++|. |   |++.++..+++.++.                   ++               .-++.-+++++.|.
T Consensus       368 sGTLgKafGcVG---GYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~  444 (570)
T KOG1360|consen  368 SGTLGKAFGCVG---GYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLM  444 (570)
T ss_pred             ccchhhhccccc---ceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence              79999986 5   889999999998876                   11               12233455666666


Q ss_pred             hccCce--------eEEEEecccHHHHHHHHHHH-HCCcEEeecC-----CCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        200 INLHIF--------WCLILLSITYYLYRYTRRMK-EAKIIVANEG-----EYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       200 ~~~G~~--------~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-----~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      + .|+-        +.+.+ .+...+.+++..|+ ++|+++...-     .+...+|++|.-.||++-++.+++.+..++
T Consensus       445 ~-~GiPVi~~pSHIiPv~v-gda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw  522 (570)
T KOG1360|consen  445 E-LGIPVIPNPSHIIPVRV-GDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVW  522 (570)
T ss_pred             H-cCCcccCCCcceeeeec-cCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHH
Confidence            6 3442        22222 45567788888888 6799997542     245789999999999999999999999999


Q ss_pred             HHHh
Q psy11784        266 TSLQ  269 (284)
Q Consensus       266 ~~~~  269 (284)
                      +++.
T Consensus       523 ~~v~  526 (570)
T KOG1360|consen  523 NEVG  526 (570)
T ss_pred             HHcC
Confidence            8863

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.70  E-value=3.5e-15  Score=134.90  Aligned_cols=170  Identities=19%  Similarity=0.106  Sum_probs=122.2

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc----ccccCCCCcEEEeccccc
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA----FQTQGAVPDIITVGKPMG  163 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a----~~~~g~~pDiv~~sK~l~  163 (284)
                      .+++++|++++.++..|. ..|.+.+++|.++|+++|+++|+||++++++..+. ...    ....+....+.+++|.++
T Consensus       130 ~~~~~~v~i~~~~~~tG~-~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~K~~~  207 (350)
T cd00609         130 TPKTKLLYLNNPNNPTGA-VLSEEELEELAELAKKHGILIISDEAYAELVYDGE-PPPALALLDAYERVIVLRSFSKTFG  207 (350)
T ss_pred             CccceEEEEECCCCCCCc-ccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCc-ccccccCcCccCcEEEEeecccccC
Confidence            356999999997777786 45788999999999999999999999998765554 221    111222222347899999


Q ss_pred             -CCcceeEEEecH-HHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc---------
Q psy11784        164 -NGMPIGAVITSR-KIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN---------  201 (284)
Q Consensus       164 -~G~p~gav~~~~-~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~---------  201 (284)
                       +|+++|++++++ ++.+.+..                               .+++.++.+++++.|++.         
T Consensus       208 ~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  287 (350)
T cd00609         208 LPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPS  287 (350)
T ss_pred             CcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence             789999999998 78777654                               124555666777777764         


Q ss_pred             cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC----CCCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        202 LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----YGNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       202 ~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      .|.+..+.+. .......+.+.|.++|+.+.++..    .++++|+.|+..  ++|++.++++|+
T Consensus       288 ~g~~~~~~~~-~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         288 GGFFLWLDLP-EGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             ccEEEEEecC-CCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence            2444455542 222355566677788999987532    357999999887  999999999885

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN02721 threonine aldolase

Probab=99.69  E-value=7e-15  Score=133.92  Aligned_cols=185  Identities=11%  Similarity=0.139  Sum_probs=126.8

Q ss_pred             HHHHHHHHHhcC----CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         77 AQAARNIMEAHR----DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~~----~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                      .+.+++.+++..    +++++|++++++++.|...++.+.+++|.++|++||+++|+||+|. ++-..............
T Consensus       120 ~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~  198 (353)
T PLN02721        120 LDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKA  198 (353)
T ss_pred             HHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhh
Confidence            577777776321    3578999999988866677799999999999999999999999985 32111000001101112


Q ss_pred             Cc--EEEecccccCCcceeE-EEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        153 PD--IITVGKPMGNGMPIGA-VITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       153 pD--iv~~sK~l~~G~p~ga-v~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      .|  +++++|++++  |+|+ +++++++++.+..                             +++..++.+++.+.|++
T Consensus       199 ~d~~~~s~sK~l~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~  276 (353)
T PLN02721        199 ADSVSVCLSKGLGA--PVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEGLNQ  276 (353)
T ss_pred             CCEEEEecccccCC--ceeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34  4578999874  5665 5677877665322                             12333455677777766


Q ss_pred             ccCc----------eeEEEEeccc--HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        201 NLHI----------FWCLILLSIT--YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       201 ~~G~----------~~~i~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +.|+          ++.+.+ +..  .....+++.|.++||.+.+.+  .+.+|+++++.++++|+++++++|++++..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~~gi~v~~~~--~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        277 IKGLRVNVAAVETNIVYFDI-TDGSRITAEKLCKSLEEHGVLLMPGN--SSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             CCCcEEecCCccceEEEEEc-cCCccccHHHHHHHHHhCCcEEecCC--CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence            4122          334444 221  346789999999999999854  578999999999999999999999987653

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.69  E-value=4.8e-15  Score=136.78  Aligned_cols=185  Identities=13%  Similarity=0.137  Sum_probs=125.9

Q ss_pred             HHHHHHHHHhcCCCeeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc-cCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT-QGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~-~g~~pD  154 (284)
                      .+.+++.+.   +++.+|+ +.| ++..|. .++++.+++|.++|++||+++|+||+|..|. .+. ...... .....+
T Consensus       147 ~~~l~~~~~---~~~~~v~l~~p-~NptG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~-~~~~~~~~~~~i~  219 (380)
T PRK06225        147 PELVKENMD---ENTRLIYLIDP-LNPLGS-SYTEEEIKEFAEIARDNDAFLLHDCTYRDFA-REH-TLAAEYAPEHTVT  219 (380)
T ss_pred             HHHHHhhcC---CCceEEEEeCC-CCCCCc-CCCHHHHHHHHHHHHHCCcEEEEehhHHHHh-ccC-CchhhcCCCCEEE
Confidence            456666554   3455554 566 445565 4588899999999999999999999998763 222 111111 112234


Q ss_pred             EEEeccccc-CCcceeEEEecHHHHHhchh-------------------h-------hh----HHHHHHHHHHHHHhc--
Q psy11784        155 IITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------L-------DD----NRPSGKYLVRPLGIN--  201 (284)
Q Consensus       155 iv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------l-------~~----~~~~~~~l~~~L~~~--  201 (284)
                      +.++||.+| .|+++|++++++++++.+..                   +       ++    .+++.+.+.+.|+++  
T Consensus       220 ~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  299 (380)
T PRK06225        220 SYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVINDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEG  299 (380)
T ss_pred             EeechhhcCCccceeEEEecCHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            668999998 68999999999998877544                   1       11    223334455566552  


Q ss_pred             --------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 --------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 --------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                              .|.++++.+.+......++++.|.++||.+.++..     +.+.+|++  +..+++++++++++|.++++++
T Consensus       300 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s--~~~~~e~l~~~~~~l~~~~~~~  377 (380)
T PRK06225        300 VFLPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVS--FSIPREQVEVFCEEFPDVVETL  377 (380)
T ss_pred             CccccCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEE--eCCCHHHHHHHHHHHHHHHHHh
Confidence                    34456666532223567899999999999987521     23588996  4568999999999999999887


Q ss_pred             hh
Q psy11784        269 QM  270 (284)
Q Consensus       269 ~~  270 (284)
                      +.
T Consensus       378 ~~  379 (380)
T PRK06225        378 RT  379 (380)
T ss_pred             hc
Confidence            53

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.67  E-value=8.6e-15  Score=134.53  Aligned_cols=176  Identities=16%  Similarity=0.174  Sum_probs=123.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+...  +..+|++...++..|...+    .++++++|+.+++++|+||+|++|++.|. .......+..|+++
T Consensus       149 ~~~l~~~~~~~--~~~~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~-~~~~~~~~~~~~~i  221 (368)
T PRK03317        149 VDAAVAAIAEH--RPDVVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGT-PSALTLLPEYPRLV  221 (368)
T ss_pred             HHHHHHHHhcc--CCCEEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCC-cCHHHHHHhCCCEE
Confidence            56777777632  3444555555777888776    77778888888999999999999976664 33344445567777


Q ss_pred             ---Eeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 ---TVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ---~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                         +|||++| .|+++|++++++++++.+..                            +++++++.+++.+.|++.   
T Consensus       222 ~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  301 (368)
T PRK03317        222 VSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRLPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLRELGLR  301 (368)
T ss_pred             EEEechhhhccchhhhhhhhCCHHHHHHHHhcCCCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence               8999998 69999999999999887653                            113344445555555543   


Q ss_pred             ----cCceeEE-EEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 ----LHIFWCL-ILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 ----~G~~~~i-~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                          .|.++.+ .+    .....+++.|+++||++.+.+ ..+++|++.   .++++++.++++|+++++.
T Consensus       302 ~~~~~~~~~~~~~~----~~~~~~~~~l~~~Gv~v~~~~-~~~~iRi~~---~~~~~~~~~~~~l~~~~~~  364 (368)
T PRK03317        302 VAPSDANFVLFGRF----ADRHAVWQGLLDRGVLIRDVG-IPGWLRVTI---GTPEENDAFLAALAEVLAT  364 (368)
T ss_pred             eCCCCCcEEEEecc----CCHHHHHHHHHHCCEEEEeCC-CCCeEEEec---CCHHHHHHHHHHHHHHHHH
Confidence                1122211 11    245778999999999998754 357999973   3788999999999888753

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.66  E-value=2.2e-14  Score=130.29  Aligned_cols=181  Identities=18%  Similarity=0.221  Sum_probs=122.3

Q ss_pred             HHHHHHHHHhc--CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc---CC
Q psy11784         77 AQAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ---GA  151 (284)
Q Consensus        77 ~~~l~~~i~~~--~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~---g~  151 (284)
                      .+.++++++..  +..+++|+++++++..|...+    +++|.++|++||+++|+||+|. +|..+.........   ..
T Consensus       117 ~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~  191 (349)
T cd06454         117 MEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTD  191 (349)
T ss_pred             HHHHHHHHHHhhccCCCeEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccc
Confidence            45677777643  245788999999998898766    8999999999999999999996 33222100011111   12


Q ss_pred             CCcEE--EecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHH
Q psy11784        152 VPDII--TVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRP  197 (284)
Q Consensus       152 ~pDiv--~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~  197 (284)
                      .+|++  +++|.++.  +.|++++++++++.+..                                .+++.++.+++.+.
T Consensus       192 ~~~i~~~s~sK~~~~--~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~  269 (349)
T cd06454         192 DVDIIMGTLGKAFGA--VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRG  269 (349)
T ss_pred             cCcEEEeechhhhcc--cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            35665  68899975  44788888887654422                                12445566666666


Q ss_pred             HHhc-------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        198 LGIN-------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       198 L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      |.++       .+.++.....++.....++.+.|.++||.+.+.+.     .++.+|+.++...+++++++++++|+++
T Consensus       270 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         270 LKELGFPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             HHhcCCcccCCCCCcEEEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            6654       11222111112234567899999999999986432     2478999999989999999999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.66  E-value=2.5e-14  Score=131.85  Aligned_cols=183  Identities=15%  Similarity=0.091  Sum_probs=125.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccc-cCccccc-cccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRS-GSHFWAF-QTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~-G~~~~a~-~~~g~~pD  154 (284)
                      .+.+++.+.   +++.+|++...++..|.. .+.+.+++|.++|++||+++|+||+|.+|... +.....+ ......+.
T Consensus       148 ~~~l~~~~~---~~~~~i~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  223 (382)
T PRK06108        148 LDRLLAAIT---PRTRALFINSPNNPTGWT-ASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDR  223 (382)
T ss_pred             HHHHHHhcC---ccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCC
Confidence            566666654   356667766556666764 58999999999999999999999999987432 2101111 11111122


Q ss_pred             ---EEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHH
Q psy11784        155 ---IITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       155 ---iv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~  199 (284)
                         +.+|||.++ .|+++|++++++++++.+..                               .++++++.+++.+.|+
T Consensus       224 ~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~  303 (382)
T PRK06108        224 IIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALR  303 (382)
T ss_pred             EEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence               237899997 58999999999988776543                               1245556666777766


Q ss_pred             hc---------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCC----CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        200 IN---------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGE----YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       200 ~~---------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      ++         .|+++++.+ +......++++.|+ ++||++.++..    ..+++|+++..  +++++++++++|.+++
T Consensus       304 ~~~~~~~~~p~~g~~~~~~l-~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l  380 (382)
T PRK06108        304 ALPGVEVAKPDGAMYAFFRI-PGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFL  380 (382)
T ss_pred             hCCCCcccCCCeeEEEEEeC-CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHH
Confidence            53         244455555 23234567888886 57999988643    24689998776  8999999999998876


Q ss_pred             H
Q psy11784        266 T  266 (284)
Q Consensus       266 ~  266 (284)
                      +
T Consensus       381 ~  381 (382)
T PRK06108        381 A  381 (382)
T ss_pred             h
Confidence            4

>PLN00175 aminotransferase family protein; Provisional

Probab=99.63  E-value=5e-14  Score=131.53  Aligned_cols=183  Identities=13%  Similarity=0.126  Sum_probs=127.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccCCCCc-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQGAVPD-  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g~~pD-  154 (284)
                      .+.|++.+.   +++.+|++...++..|. +++++.+++|.++|++||+++|.||+|..|-..+. .... ...+..+. 
T Consensus       177 ~~~l~~~~~---~~~k~i~i~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~~v  251 (413)
T PLN00175        177 EDELKAAFT---SKTRAILINTPHNPTGK-MFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYERT  251 (413)
T ss_pred             HHHHHHhcC---cCceEEEecCCCCCCCc-CCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcCcE
Confidence            566776664   35677777766666776 56899999999999999999999999987633332 1111 11222222 


Q ss_pred             --EEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        155 --IITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 --iv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                        +-+|||.++ .|+++|++++++++++.+..                               .+.++++.+.+.+.|++
T Consensus       252 i~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  331 (413)
T PLN00175        252 VTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKE  331 (413)
T ss_pred             EEEecchhhccCcchheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              237899998 79999999999988876644                               12455566667777766


Q ss_pred             c--------cCceeEEEEeccc-HHHHHHHHHHH-HCCcEEeecCCC-------CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLSIT-YYLYRYTRRMK-EAKIIVANEGEY-------GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       201 ~--------~G~~~~i~~~~~~-~~~~~~~~~l~-~~Gv~~~~~~~~-------~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .        .|+++++.+.+.. ....++++.|+ ++||.+.|+..+       .+.+||+..  .+++++++++++|.+
T Consensus       332 ~g~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~  409 (413)
T PLN00175        332 VGFKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKT  409 (413)
T ss_pred             CCCeecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHH
Confidence            4        3445566653212 13568888887 569999987432       368999754  589999999999988


Q ss_pred             HHH
Q psy11784        264 IFT  266 (284)
Q Consensus       264 ~l~  266 (284)
                      +++
T Consensus       410 ~~~  412 (413)
T PLN00175        410 KLK  412 (413)
T ss_pred             HHh
Confidence            765

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.63  E-value=6.9e-14  Score=128.28  Aligned_cols=173  Identities=15%  Similarity=0.150  Sum_probs=115.7

Q ss_pred             HHHHHHHHHhcCCCeeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCc----cccCccccccccCC
Q psy11784         77 AQAARNIMEAHRDNIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG----RSGSHFWAFQTQGA  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~g----r~G~~~~a~~~~g~  151 (284)
                      .++|++.++   +++.+|+ +.+ .+..|.+.+    +++|.++|++||+++++||+|+++.    +.+. .+....  .
T Consensus       141 ~~~l~~~i~---~~~~~vi~~~~-~~~tG~~~~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~-~~~~~~--~  209 (371)
T PRK13520        141 VKAVEDLID---DNTIGIVGIAG-TTELGQVDP----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPP-NFDFSL--P  209 (371)
T ss_pred             HHHHHHHHh---hCCEEEEEEcC-CcCCcccCC----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCC-CccccC--C
Confidence            678888886   2344444 333 345788777    9999999999999999999998652    1111 122111  2


Q ss_pred             CCcEEEe--cccccCCcceeEEEe-cHHHHHhch------------------h----------------------hhhHH
Q psy11784        152 VPDIITV--GKPMGNGMPIGAVIT-SRKIAESLN------------------C----------------------LDDNR  188 (284)
Q Consensus       152 ~pDiv~~--sK~l~~G~p~gav~~-~~~i~~~~~------------------~----------------------l~~~~  188 (284)
                      ..|.+++  .|.+.+|+|+|+++. ++++.+.+.                  .                      .++..
T Consensus       210 ~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~  289 (371)
T PRK13520        210 GVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCM  289 (371)
T ss_pred             CCceEEECCccccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHH
Confidence            3466654  365555688988886 444544321                  0                      23556


Q ss_pred             HHHHHHHHHHHhccCce---------eEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHH
Q psy11784        189 PSGKYLVRPLGINLHIF---------WCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVS  259 (284)
Q Consensus       189 ~~~~~l~~~L~~~~G~~---------~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~  259 (284)
                      ++++++.+.|+++ |+-         +.+.+ +   ...++.+.|.++||.+.++. .++++|++++..+|++|++.+++
T Consensus       290 ~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~-~---~~~~v~~~L~~~gi~v~~~~-~~~~iRis~~~~~t~edi~~~~~  363 (371)
T PRK13520        290 ENTRWLAEELKER-GFEPVIEPVLNIVAFDD-P---NPDEVREKLRERGWRVSVTR-CPEALRIVCMPHVTREHIENFLE  363 (371)
T ss_pred             HHHHHHHHHHHhC-CCEEecCCCceEEEEec-C---CHHHHHHHHHHCCceeccCC-CCCEEEEEEECCCCHHHHHHHHH
Confidence            6777787877764 432         12222 1   36688999999999998753 35789998877889999999999


Q ss_pred             HHHHHHH
Q psy11784        260 TLNRIFT  266 (284)
Q Consensus       260 ~l~~~l~  266 (284)
                      .|+++++
T Consensus       364 ~l~~~~~  370 (371)
T PRK13520        364 DLKEVKK  370 (371)
T ss_pred             HHHHHhh
Confidence            9988764

>PRK07324 transaminase; Validated

Probab=99.63  E-value=8.6e-14  Score=128.25  Aligned_cols=183  Identities=13%  Similarity=0.147  Sum_probs=122.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g~~pDi  155 (284)
                      .+++++.+.   +++.+|++...++..|. ..+++.+++|.++|++||+++|+||+|.++...+. .... +.++-.-.+
T Consensus       143 ~~~l~~~~~---~~~kli~i~~p~NPtG~-~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~~~~~~I~~  217 (373)
T PRK07324        143 LDELRRLVR---PNTKLICINNANNPTGA-LMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIADLYEKGIST  217 (373)
T ss_pred             HHHHHHhCC---CCCcEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhhccCCEEEE
Confidence            456665553   45667777655666665 55899999999999999999999999998754332 1111 111111123


Q ss_pred             EEeccccc-CCcceeEEEecHHHHHhchh--------------------hh-----------hHHHHHHHHHHHHHhc--
Q psy11784        156 ITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------LD-----------DNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l~-----------~~~~~~~~l~~~L~~~--  201 (284)
                      -++||.++ .|+++|++++++++++.+..                    ++           .++++.+.+.+.|++.  
T Consensus       218 ~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~  297 (373)
T PRK07324        218 NSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPR  297 (373)
T ss_pred             ecchhhcCCccceeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            47899998 69999999999988876654                    11           1223333444444432  


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                             .|.+..+.+ +......+++++|+ ++||++.|+..+  .+++|++  +..+++.+.+++++|.+++++
T Consensus       298 ~~~~~p~gg~~~~i~~-~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis--~~~~~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        298 VSYVKPKAVSTSFVKL-DVDMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG--YCCDTETLKKGLKKLSEFLRE  370 (373)
T ss_pred             ceEECCCceEEEEEEe-CCCCCHHHHHHHHHHhcCEEEECccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence                   122334444 22234667888876 679999987643  3689996  456799999999999998865

>PRK07777 aminotransferase; Validated

Probab=99.62  E-value=7.9e-14  Score=129.00  Aligned_cols=183  Identities=16%  Similarity=0.165  Sum_probs=126.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-CCCC-c
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVP-D  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-g~~p-D  154 (284)
                      ++++++.+.   +++.+|++.+.++..|.. .+.+.+++|.++|++|++++|+||+|.++...+........+ +... +
T Consensus       149 ~~~l~~~~~---~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  224 (387)
T PRK07777        149 LDALRAAVT---PRTRALIVNSPHNPTGTV-LTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERT  224 (387)
T ss_pred             HHHHHHhcC---cccEEEEEcCCCCCCCcc-CCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcE
Confidence            566666654   356677777667777764 488999999999999999999999998764323211111111 2111 2


Q ss_pred             --EEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        155 --IITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 --iv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                        +.++||.++ .|+++|++++++++.+.+..                               .+.++++.+++.+.|++
T Consensus       225 i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  304 (387)
T PRK07777        225 VTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAE  304 (387)
T ss_pred             EEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence              347899998 69999999999988765543                               12456667777777766


Q ss_pred             c--------cCceeEEEEecc-cHHHHHHHHHHH-HCCcEEeecCCC-------CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLSI-TYYLYRYTRRMK-EAKIIVANEGEY-------GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       201 ~--------~G~~~~i~~~~~-~~~~~~~~~~l~-~~Gv~~~~~~~~-------~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .        .|+++++.+.+. .....++++.|+ ++||.+.|+..+       .+.+|++.  ..+++++++++++|.+
T Consensus       305 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~--~~~~~~l~~~l~~l~~  382 (387)
T PRK07777        305 AGFEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAF--CKRDDTLDEAIRRLRA  382 (387)
T ss_pred             CCCCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEe--cCCHHHHHHHHHHHHH
Confidence            4        234555565311 124678999997 579999887432       35799965  4589999999999977


Q ss_pred             HH
Q psy11784        264 IF  265 (284)
Q Consensus       264 ~l  265 (284)
                      +.
T Consensus       383 ~~  384 (387)
T PRK07777        383 LR  384 (387)
T ss_pred             Hh
Confidence            54

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.62  E-value=1.2e-13  Score=128.63  Aligned_cols=185  Identities=12%  Similarity=0.202  Sum_probs=125.3

Q ss_pred             HHHHHHHHHhcCCCeeEE-EEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc-
Q psy11784         77 AQAARNIMEAHRDNIATL-ICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD-  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaav-i~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD-  154 (284)
                      .+.+++.++   +++.+| +.-| ++-.|. ..+.+.+++|.++|++||+++|.||+|..|-..|...-........+| 
T Consensus       168 ~~~l~~~~~---~~~k~v~l~~P-~NPTG~-~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~  242 (405)
T PRK06207        168 LDQLEEAFK---AGVRVFLFSNP-NNPAGV-VYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPEN  242 (405)
T ss_pred             HHHHHHhhh---hcCeEEEECCC-CCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCc
Confidence            566777665   234555 4556 555665 458899999999999999999999999976433421111111222233 


Q ss_pred             E---EEeccccc-CCcceeEEEecHHHHHhchh--------------------h-----------hhHHHHHHHHHHHHH
Q psy11784        155 I---ITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L-----------DDNRPSGKYLVRPLG  199 (284)
Q Consensus       155 i---v~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l-----------~~~~~~~~~l~~~L~  199 (284)
                      +   .+|||.++ .|+++|++++++++++.+..                    +           +..+++.+++.+.|+
T Consensus       243 vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~  322 (405)
T PRK06207        243 VITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLR  322 (405)
T ss_pred             EEEEecchhhccCcccceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2   36899998 79999999999988877644                    1           122233444555554


Q ss_pred             hc---------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        200 IN---------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       200 ~~---------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      ++         .|+++++.+.+.......+++.|+ ++||.+.|+..+    .+++|++..  .+++++++++++|.+++
T Consensus       323 ~~~~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~l  400 (405)
T PRK06207        323 GVEGVFVRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQLI  400 (405)
T ss_pred             cCCCceecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence            42         355666766321224577888887 689999987543    468999755  48999999999999988


Q ss_pred             HHH
Q psy11784        266 TSL  268 (284)
Q Consensus       266 ~~~  268 (284)
                      +++
T Consensus       401 ~~~  403 (405)
T PRK06207        401 ERY  403 (405)
T ss_pred             HHh
Confidence            764

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.60  E-value=2.5e-13  Score=125.02  Aligned_cols=176  Identities=14%  Similarity=0.098  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhc----CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         77 AQAARNIMEAH----RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~----~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                      ++++++.++..    ..++.+|+++.+.+..|...+    +++|.++|++||+++|+||+|. +|..+.   ...  ...
T Consensus       129 ~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea~~-~g~~~~---~~~--~~~  198 (370)
T TIGR02539       129 PEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCAYT-VGRMPV---SAK--EIG  198 (370)
T ss_pred             HHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECccc-cCCcCC---CHH--HcC
Confidence            67777777531    124667888877777888887    9999999999999999999997 433332   111  123


Q ss_pred             CcEE--EecccccCCcceeEEEecHHHHHhchh----------------------------hh----------hHHHHHH
Q psy11784        153 PDII--TVGKPMGNGMPIGAVITSRKIAESLNC----------------------------LD----------DNRPSGK  192 (284)
Q Consensus       153 pDiv--~~sK~l~~G~p~gav~~~~~i~~~~~~----------------------------l~----------~~~~~~~  192 (284)
                      +|++  +++|++++|.|+|++++++++++.+..                            ++          +..++.+
T Consensus       199 ~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~  278 (370)
T TIGR02539       199 ADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTR  278 (370)
T ss_pred             CCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5654  789999877789999999998875433                            11          1123356


Q ss_pred             HHHHHHHhccCce-----------eEEEEecc--------cHHHHHHHHHHHHCCcE-EeecCCCCCEEEEEcCCCCCHH
Q psy11784        193 YLVRPLGINLHIF-----------WCLILLSI--------TYYLYRYTRRMKEAKII-VANEGEYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       193 ~l~~~L~~~~G~~-----------~~i~~~~~--------~~~~~~~~~~l~~~Gv~-~~~~~~~~~~lr~~p~l~~t~~  252 (284)
                      ++++.|+++ |+-           +.+++ +.        ...+..+.+.|+++||+ ++++  ..+++|++. ..+|++
T Consensus       279 ~l~~~L~~~-g~~~~~~~~s~t~~v~~~~-~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~--~~~~iRis~-~~~t~e  353 (370)
T TIGR02539       279 WFVAELEDI-GFIQLGQKPKEHDLVKFET-PGFHEIAQKHKRRGYFLYEELKKRGIHGIRSG--QTKYFKLSV-YGLTKE  353 (370)
T ss_pred             HHHHHHHhC-CcEEEccCCCcCceEEEEC-CchhHHhhhhccccHHHHHHHHhCCCccccCC--cceEEEEEe-cCCCHH
Confidence            777778774 432           22222 21        11244689999999998 5542  246899986 468999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11784        253 NVLFIVSTLNRIFTS  267 (284)
Q Consensus       253 ~id~~~~~l~~~l~~  267 (284)
                      |+++++++|++++++
T Consensus       354 ~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       354 QVEYVVDSFEEIVEE  368 (370)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988765

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.60  E-value=1.6e-13  Score=126.01  Aligned_cols=181  Identities=16%  Similarity=0.124  Sum_probs=122.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++.+++.+.   +++.+|++...++..|...+ .+.+.++.+.|+ +|+++|+||+|..+...+....+....+..++++
T Consensus       144 ~~~l~~~~~---~~~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i  218 (367)
T PRK02731        144 LDAMLAAVT---PRTRLVFIANPNNPTGTYLP-AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVV  218 (367)
T ss_pred             HHHHHHHhC---CCCcEEEEeCCCCCCCcCCC-HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEE
Confidence            566766664   35667777666777887664 444444444443 4999999999987644332111222233334554


Q ss_pred             ---Eeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 ---TVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ---~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                         ++||.++ .|+++|++++++++++.+..                            .+..+++.+++.+.|++.   
T Consensus       219 ~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  298 (367)
T PRK02731        219 VTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAELGLE  298 (367)
T ss_pred             EEeeehHhhcCcccceeeeeCCHHHHHHHHHccCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence               7899997 68999999999998876653                            113344455566666553   


Q ss_pred             ----cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 ----LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 ----~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                          .|.++++.+ +......++++.|.++||++.++..+  .+++|+++.   ++++++.+++.|+++++
T Consensus       299 ~~~~~g~~~~i~~-~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        299 YIPSVGNFILVDF-DDGKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFLA  365 (367)
T ss_pred             cCCCCceEEEEEC-CCCCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence                456667776 33345778999999999999987543  368999753   78999999999988764

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.59  E-value=4.3e-13  Score=124.23  Aligned_cols=185  Identities=16%  Similarity=0.145  Sum_probs=121.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc--cCCCC-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT--QGAVP-  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~--~g~~p-  153 (284)
                      .+.+++.++   +++.+|++...++..|. ..|.+.+++|.++|++||+++|+||+|..+...|..+.....  .+..+ 
T Consensus       154 ~~~l~~~l~---~~~~~v~~~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  229 (393)
T PRK05764        154 VEQLEAAIT---PKTKALILNSPSNPTGA-VYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDR  229 (393)
T ss_pred             HHHHHHhhC---ccceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCC
Confidence            456666664   34555555433444555 467889999999999999999999999866332321111111  12222 


Q ss_pred             cE--EEeccccc-CCcceeEEEecHHHHHhchh--------------------h-----------hhHHHHHHHHHHHHH
Q psy11784        154 DI--ITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L-----------DDNRPSGKYLVRPLG  199 (284)
Q Consensus       154 Di--v~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l-----------~~~~~~~~~l~~~L~  199 (284)
                      ++  .++||.++ .|+++|++++++++++.+..                    +           ++++++.+++++.|+
T Consensus       230 ~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~  309 (393)
T PRK05764        230 TITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLN  309 (393)
T ss_pred             EEEEecCcccccCccceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHh
Confidence            22  35899998 79999999999998877643                    1           123344555566665


Q ss_pred             hc---------cCceeEEEEecccH----HHHHHHHHHH-HCCcEEeecCCCC--CEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        200 IN---------LHIFWCLILLSITY----YLYRYTRRMK-EAKIIVANEGEYG--NVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       200 ~~---------~G~~~~i~~~~~~~----~~~~~~~~l~-~~Gv~~~~~~~~~--~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      +.         .|.++++.+.+...    ...++++.++ ++||.+.++..++  +++|++  +..+++++++++++|.+
T Consensus       310 ~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~~~~~i~~l~~  387 (393)
T PRK05764        310 EIPGLECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLEDLEEGLERIER  387 (393)
T ss_pred             hCCCCcccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence            53         23444555531111    2467887776 5799998875443  789996  55689999999999999


Q ss_pred             HHHH
Q psy11784        264 IFTS  267 (284)
Q Consensus       264 ~l~~  267 (284)
                      ++++
T Consensus       388 ~~~~  391 (393)
T PRK05764        388 FLES  391 (393)
T ss_pred             HHHh
Confidence            8864

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.59  E-value=2e-13  Score=124.94  Aligned_cols=180  Identities=15%  Similarity=0.140  Sum_probs=129.8

Q ss_pred             HHHHHHHHHhcC-C--CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc-ccc-ccccCC
Q psy11784         77 AQAARNIMEAHR-D--NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH-FWA-FQTQGA  151 (284)
Q Consensus        77 ~~~l~~~i~~~~-~--~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~-~~a-~~~~g~  151 (284)
                      .++|++.+++.. .  ...+|++...++..|. .++.+.+++|.++|++||+++|+||+|..+. .+.. ++. .....-
T Consensus       132 ~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~-~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~  209 (363)
T PF00155_consen  132 PEALEEALDELPSKGPRPKAVLICNPNNPTGS-VLSLEELRELAELAREYNIIIIVDEAYSDLI-FGDPDFGPIRSLLDE  209 (363)
T ss_dssp             HHHHHHHHHTSHTTTETEEEEEEESSBTTTTB-B--HHHHHHHHHHHHHTTSEEEEEETTTTGB-SSSSHTHHHHGHHTT
T ss_pred             ccccccccccccccccccceeeeccccccccc-ccccccccchhhhhcccccceeeeeceeccc-cCCCccCcccccccc
Confidence            678888888432 2  3567777777777787 5589999999999999999999999998763 3321 111 111223


Q ss_pred             CCc-EE--Eeccccc-CCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHH
Q psy11784        152 VPD-II--TVGKPMG-NGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       152 ~pD-iv--~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~  195 (284)
                      .++ ++  ++||.++ .|+++|++++++++++.+..                                .+.++++.+++.
T Consensus       210 ~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~  289 (363)
T PF00155_consen  210 DDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLR  289 (363)
T ss_dssp             TSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeeeeccccccccccccccccchhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHH
Confidence            333 32  6889998 68999999999999887765                                124555666677


Q ss_pred             HHHHhc--------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        196 RPLGIN--------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGE--YGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       196 ~~L~~~--------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                      +.|++.        .|++.++.+..  ....++++.|+++ ||.+.|+..  ..+++|++. ..++++++++++++|
T Consensus       290 ~~L~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  290 EALEEIGITVLPPEAGFFLWVRLDP--NDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             HHHHHTTSEEEHHSBSSEEEEEESH--HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             HHHHHhhhheeeccCccEEEEEccc--chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence            777654        46666666632  2578899999988 999998643  257899987 688999999999886

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.58  E-value=4e-13  Score=122.29  Aligned_cols=179  Identities=13%  Similarity=0.143  Sum_probs=118.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+..+ .++..|++-......|...+    +++|.++|++||+++|+|++++ +|..   .+....+++..-+.
T Consensus       113 ~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g~~---~~~~~~~~~d~~~~  183 (355)
T TIGR03301       113 LNRIEEALAAD-PDITHVATVHHETTTGILNP----LEAIAKVARSHGAVLIVDAMSS-FGAI---PIDIEELDVDALIA  183 (355)
T ss_pred             HHHHHHHHHhC-CCceEEEEEecCCcccchhH----HHHHHHHHHHcCCEEEEEeccc-cCCc---ccchhhcCccEEEe
Confidence            57788887643 34444443223344677666    8999999999999999999886 5422   22333333322234


Q ss_pred             EecccccCCcceeEEEecHHHHHhch--------------------------h------------------------hhh
Q psy11784        157 TVGKPMGNGMPIGAVITSRKIAESLN--------------------------C------------------------LDD  186 (284)
Q Consensus       157 ~~sK~l~~G~p~gav~~~~~i~~~~~--------------------------~------------------------l~~  186 (284)
                      +++|+++++..+|++++++++++.+.                          .                        .++
T Consensus       184 s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~  263 (355)
T TIGR03301       184 SANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIAR  263 (355)
T ss_pred             cCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            67899976545799999988765533                          0                        124


Q ss_pred             HHHHHHHHHHHHHhc-----------cCceeEEEEecc-cHHHHHHHHHHHHCCcEEeecCCC-CCEEEEEcCCCCCHHH
Q psy11784        187 NRPSGKYLVRPLGIN-----------LHIFWCLILLSI-TYYLYRYTRRMKEAKIIVANEGEY-GNVLLFLPAMCLTTEN  253 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~-----------~G~~~~i~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~~-~~~lr~~p~l~~t~~~  253 (284)
                      .+++.+++.+.|+++           .++++++.+... .....++.+.|.++||++.++... .+.+|+++...++++|
T Consensus       264 ~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~  343 (355)
T TIGR03301       264 YRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAAD  343 (355)
T ss_pred             HHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHH
Confidence            455666777777664           112233333211 124568999999999999876422 3689999988889999


Q ss_pred             HHHHHHHHHHH
Q psy11784        254 VLFIVSTLNRI  264 (284)
Q Consensus       254 id~~~~~l~~~  264 (284)
                      ++++++.|+++
T Consensus       344 i~~~~~~l~~~  354 (355)
T TIGR03301       344 IERLLEAIKDA  354 (355)
T ss_pred             HHHHHHHHHhh
Confidence            99999999865

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.58  E-value=7.6e-14  Score=129.23  Aligned_cols=185  Identities=19%  Similarity=0.244  Sum_probs=133.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC-ccccccccCC---C
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-HFWAFQTQGA---V  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~~a~~~~g~---~  152 (284)
                      .+.+++.+.   +++.+|++..=.+-.|. ++++++|++|.++|++||+++|+||+|.+|-..|. .....+..+.   .
T Consensus       153 ~~~l~~~i~---~ktk~i~ln~P~NPTGa-v~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~  228 (393)
T COG0436         153 LEDLEAAIT---PKTKAIILNSPNNPTGA-VYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRT  228 (393)
T ss_pred             HHHHHhhcC---ccceEEEEeCCCCCcCc-CCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceE
Confidence            677777776   36777877654555565 56999999999999999999999999999877663 1112222221   1


Q ss_pred             CcEEEeccccc-CCcceeEEEec-HHHHHhchh--------------------h-------------hhHHHHHHHHHHH
Q psy11784        153 PDIITVGKPMG-NGMPIGAVITS-RKIAESLNC--------------------L-------------DDNRPSGKYLVRP  197 (284)
Q Consensus       153 pDiv~~sK~l~-~G~p~gav~~~-~~i~~~~~~--------------------l-------------~~~~~~~~~l~~~  197 (284)
                      -.+-.|||..+ .||++|+++++ +++.+.+..                    +             +.++++.+.+.+.
T Consensus       229 i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~  308 (393)
T COG0436         229 ITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEA  308 (393)
T ss_pred             EEEecccccccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHH
Confidence            22336899999 69999999999 877776653                    1             1366777788888


Q ss_pred             HHhc---------cCcee-EEEEecccHHHHHHHHHHHH-CCcEEeecCCCC-----CEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        198 LGIN---------LHIFW-CLILLSITYYLYRYTRRMKE-AKIIVANEGEYG-----NVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       198 L~~~---------~G~~~-~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~-----~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                      |++.         .|.|+ .+.+ +...+..+|+..|++ .||.+.|+..++     +++|+  ++..++++++++++++
T Consensus       309 l~~~~g~~~~~~p~Ga~Y~~~~i-~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRi--s~~~~~~~l~~a~~rl  385 (393)
T COG0436         309 LNEIGGLSVVKPPEGAFYLFPKI-PELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRL--SLATSEETLEEALRRL  385 (393)
T ss_pred             HHhcCCeeeccCCCeeEEEEeec-CCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEE--EEecCHHHHHHHHHHH
Confidence            8865         23333 3333 332467889998885 589999986544     47998  5777889999999999


Q ss_pred             HHHHHHH
Q psy11784        262 NRIFTSL  268 (284)
Q Consensus       262 ~~~l~~~  268 (284)
                      .+.++..
T Consensus       386 ~~~~~~~  392 (393)
T COG0436         386 ARFLAEY  392 (393)
T ss_pred             HHHHHhc
Confidence            9988653

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.56  E-value=1.2e-12  Score=121.38  Aligned_cols=187  Identities=12%  Similarity=0.173  Sum_probs=127.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD--  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD--  154 (284)
                      .+.+++.++...+++.+|++...++..|. ..+.+.+++|.++|++||+++|+||++..|-..|.........  .++  
T Consensus       153 ~~~l~~~~~~~~~~~~~i~l~~P~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~  229 (391)
T PRK07309        153 PEMLEKAILEQGDKLKAVILNYPANPTGV-TYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY--LPDQT  229 (391)
T ss_pred             HHHHHHHhhccCCCeEEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh--ccCCE
Confidence            57777777644445777776622555565 5578889999999999999999999998763333211121111  223  


Q ss_pred             E--EEeccccc-CCcceeEEEecHHHHHhchh--------------------h-----------hhHHHHHHHHHHHHHh
Q psy11784        155 I--ITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L-----------DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 i--v~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l-----------~~~~~~~~~l~~~L~~  200 (284)
                      +  -++||.++ .|+++|++++++++++.+..                    +           ++++++.+++.+.|++
T Consensus       230 i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  309 (391)
T PRK07309        230 ILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTD  309 (391)
T ss_pred             EEEecChhhccCccceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  36899998 79999999999998876654                    1           1344555666666665


Q ss_pred             c--------cCceeEEEEec-ccHHHHHHHHHH-HHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLS-ITYYLYRYTRRM-KEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       201 ~--------~G~~~~i~~~~-~~~~~~~~~~~l-~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      .        .|+++++.+.+ ......++++.+ .++||.+.|+..+    ++++|+..+  .+++++++++++|.++++
T Consensus       310 ~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~  387 (391)
T PRK07309        310 LGFKIIKPDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYME  387 (391)
T ss_pred             CCCeecCCCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            3        34455555521 112356777665 4789999987532    468999754  478999999999999887


Q ss_pred             HH
Q psy11784        267 SL  268 (284)
Q Consensus       267 ~~  268 (284)
                      +.
T Consensus       388 ~~  389 (391)
T PRK07309        388 EH  389 (391)
T ss_pred             hh
Confidence            64

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.56  E-value=5.3e-13  Score=123.08  Aligned_cols=177  Identities=14%  Similarity=0.107  Sum_probs=123.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++   +++..|++..+++..|...+    +++|.++|++||+++|+|++|+ +|.     ...+......|++
T Consensus       126 ~~~l~~~i~---~~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~-----~~~~~~~~~~D~~  192 (379)
T TIGR03402       126 LEELRAAIT---DDTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGK-----IPIDLKEMNIDML  192 (379)
T ss_pred             HHHHHHhcC---CCcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-ccc-----cccCcccCCCCEE
Confidence            567777765   45778888888888898887    8899999999999999999997 432     1222334568999


Q ss_pred             Eec--ccccCCcceeEEEecHHHHH--hc---------hh-------------------------hhhHHHHHHHHHHHH
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAE--SL---------NC-------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~--~~---------~~-------------------------l~~~~~~~~~l~~~L  198 (284)
                      ++|  | +.|...+|++..+++..-  .+         ..                         .++.+++.+++++.|
T Consensus       193 ~~s~~K-~~gp~G~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l  271 (379)
T TIGR03402       193 SLSGHK-LHGPKGVGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGL  271 (379)
T ss_pred             EEcHHH-cCCCCceEEEEECCCCCCCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            998  9 655445788777754310  00         00                         135566667777777


Q ss_pred             Hh-c-----cC-------ceeEEEEecccHHHHHHHHHHHHCCcEEeecCC---------------------CCCEEEEE
Q psy11784        199 GI-N-----LH-------IFWCLILLSITYYLYRYTRRMKEAKIIVANEGE---------------------YGNVLLFL  244 (284)
Q Consensus       199 ~~-~-----~G-------~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------~~~~lr~~  244 (284)
                      ++ +     .|       ..+.+.+.  ......+.+.|.++||.+..+..                     ..+.+|++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S  349 (379)
T TIGR03402       272 LARIPDARLNGDPTKRLPNTVNISFE--YIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFS  349 (379)
T ss_pred             HhhCCCEEEeCCCccCCCCEEEEEec--CCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEE
Confidence            64 3     11       11222221  12356788888889999985421                     13679999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        245 PAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       245 p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      |+...|++|||++++.|+++++.+.
T Consensus       350 ~~~~~t~~di~~~~~~l~~~~~~~~  374 (379)
T TIGR03402       350 LSRYNTEEDIDYVLEVLPPIIARLR  374 (379)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988764

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.56  E-value=8.4e-13  Score=122.11  Aligned_cols=181  Identities=15%  Similarity=0.174  Sum_probs=120.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-CCCCc-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPD-  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-g~~pD-  154 (284)
                      .+.+++.+.   +++.+|++..-++..|. ..+.+.+++|.++|++||+++|.||+|..|-..+. ....... +..+. 
T Consensus       152 ~~~l~~~~~---~~~~~v~l~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~v  226 (384)
T PRK06348        152 VKKLEALIT---SKTKAIILNSPNNPTGA-VFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAGMPERT  226 (384)
T ss_pred             HHHHHHhhC---cCccEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC-ccchhhcCCCcCcE
Confidence            567777664   24455555433555565 55899999999999999999999999997732222 1111111 22222 


Q ss_pred             --EEEeccccc-CCcceeEEEecHHHHHhchh--------------------h-----------hhHHHHHHHHHHHHHh
Q psy11784        155 --IITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L-----------DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 --iv~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l-----------~~~~~~~~~l~~~L~~  200 (284)
                        +.+|||.++ .|+++|++++++++.+.+..                    +           +.++++.+++.+.|++
T Consensus       227 i~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~  306 (384)
T PRK06348        227 ITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES  306 (384)
T ss_pred             EEEecchhccCCccccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              237899998 79999999999988776543                    1           1234444555566654


Q ss_pred             c---------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      +         .|+++++.+........++++.|+ ++||.+.|+..+    .+.+|++.  ..+++++++++++|.+.
T Consensus       307 ~~~~~~~~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        307 IPNLSLHPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC--TVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             CCCceeccCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe--cCCHHHHHHHHHHHHhh
Confidence            3         344556666312234667888886 579999987543    36899975  45899999999988653

>PRK08960 hypothetical protein; Provisional

Probab=99.55  E-value=1.9e-12  Score=119.78  Aligned_cols=181  Identities=14%  Similarity=0.185  Sum_probs=120.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++.  .....++..| ++..|. ..+.+.+++|.++|++||+++|+||+|..|-..+. ..  ......++++
T Consensus       155 ~~~l~~~~~~--~~~~i~i~~p-~NPtG~-~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~--~~~~~~~~vi  227 (387)
T PRK08960        155 PALVERHWNA--DTVGALVASP-ANPTGT-LLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AA--SVLEVDDDAF  227 (387)
T ss_pred             HHHHHHHhCc--cceEEEEECC-CCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CC--ChhhccCCEE
Confidence            5666666541  2244455666 455665 45889999999999999999999999987732222 11  1123445655


Q ss_pred             ---Eeccccc-CCcceeEEEecHHHHHhchh--------------------h------------hhHHHHHHHHHHHHHh
Q psy11784        157 ---TVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L------------DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       157 ---~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l------------~~~~~~~~~l~~~L~~  200 (284)
                         +|||.++ .|+++|++++++++++.+..                    +            +.++++.+.+.+.|++
T Consensus       228 ~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~  307 (387)
T PRK08960        228 VLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRE  307 (387)
T ss_pred             EEeecccccCCcccEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               4899997 79999999999988876643                    1            1234445555555554


Q ss_pred             c---------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC-----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY-----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~-----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      .         .|+++++++........++++.|+ ++||.+.|+..+     ++++|++...  +.+.+.+++++|.+++
T Consensus       308 ~~~~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~--~~~~l~~al~~l~~~~  385 (387)
T PRK08960        308 LGFGIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ--SLPRLQEAVERIARGL  385 (387)
T ss_pred             cCCcCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence            2         334555555211124567888876 689999986332     3689997663  7888888888887766


Q ss_pred             H
Q psy11784        266 T  266 (284)
Q Consensus       266 ~  266 (284)
                      +
T Consensus       386 ~  386 (387)
T PRK08960        386 R  386 (387)
T ss_pred             h
Confidence            4

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.55  E-value=2e-12  Score=119.74  Aligned_cols=186  Identities=15%  Similarity=0.181  Sum_probs=127.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccCCCCc-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQGAVPD-  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g~~pD-  154 (284)
                      .+++++.+.   +++.+|++-..+...|. ..|++.+++|.++|++||+++|+||++..|-..+...... ...+..+. 
T Consensus       150 ~~~l~~~i~---~~~klv~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  225 (389)
T PRK05957        150 PEAIEQAIT---PKTRAIVTISPNNPTGV-VYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHT  225 (389)
T ss_pred             HHHHHHhcC---cCceEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcE
Confidence            566777664   34566665554666675 4578899999999999999999999998763322111111 11122222 


Q ss_pred             --EEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        155 --IITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 --iv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                        +.++||.++ .|+++|++++++++++.+..                               .++++++.+++.+.|++
T Consensus       226 i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~  305 (389)
T PRK05957        226 ISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQ  305 (389)
T ss_pred             EEEecchhhccCccceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence              347899997 68999999999999887754                               12344555556666654


Q ss_pred             c----------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        201 N----------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       201 ~----------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      +          .|+++++.+ +......++++.|+ ++||.+.|+..+    ++++|++... .+++++++++++|.+.+
T Consensus       306 ~~~~~~~~~~~gg~~~~~~~-~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~  383 (389)
T PRK05957        306 LQDRCTLHPANGAFYCFLKV-NTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGL  383 (389)
T ss_pred             cCCCccccCCCeeEEEEEeC-CCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            3          245556666 33345678989987 589999987432    3589997543 47999999999999888


Q ss_pred             HHH
Q psy11784        266 TSL  268 (284)
Q Consensus       266 ~~~  268 (284)
                      +.+
T Consensus       384 ~~~  386 (389)
T PRK05957        384 KTI  386 (389)
T ss_pred             Hhh
Confidence            765

>KOG1357|consensus

Probab=99.54  E-value=9.4e-14  Score=125.51  Aligned_cols=232  Identities=16%  Similarity=0.199  Sum_probs=160.5

Q ss_pred             CCccEEEEcCCCcccchhhhcCCCCcccc------cCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHHHHHHh---
Q psy11784         16 GRQNIVVVDAAYHGTVNLLLDISPRAFML------SSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEA---   86 (284)
Q Consensus        16 ~r~~il~~~~~yHG~t~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---   86 (284)
                      |+...++|.-||--++....++-+.....      +.++..+.. .+......+.||+         .++||++|+.   
T Consensus       196 g~e~a~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaR-LSgAtiRVfkHNd---------m~~LEr~Lrd~I~  265 (519)
T KOG1357|consen  196 GVEDAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLITGAR-LSGATTRVFRHND---------MQGLERLLRDAIV  265 (519)
T ss_pred             CCcceEEEeccccccccCcceeecCCcceeeccccchheecccc-ccCceEEEEecCC---------HHHHHHHHHHHHh
Confidence            78889999999888876665543222111      122222221 2333333456665         6677777651   


Q ss_pred             c-CC------CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCccccccccCCCC---c
Q psy11784         87 H-RD------NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQGAVP---D  154 (284)
Q Consensus        87 ~-~~------~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~g~~p---D  154 (284)
                      . .+      +.-.||+|.+.+|.|.++.    |+++.+++|+|.+.|++||+|+ | .|++|.  ..++++|+.|   |
T Consensus       266 ~gqP~Thrp~kki~iivegiysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tGr--gvce~~g~d~~dvD  339 (519)
T KOG1357|consen  266 YGQPKTHRPWKKILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATGR--GVCEYFGVDPEDVD  339 (519)
T ss_pred             cCCCCcCCcchheeeeeccceeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCCc--ceeeccCCCchhhe
Confidence            1 11      2567899999999999998    9999999999999999999998 3 478886  5778888876   4


Q ss_pred             EE--EecccccC-CcceeEEEecHHHHHhchh--------------------------------------hhhHHHHHHH
Q psy11784        155 II--TVGKPMGN-GMPIGAVITSRKIAESLNC--------------------------------------LDDNRPSGKY  193 (284)
Q Consensus       155 iv--~~sK~l~~-G~p~gav~~~~~i~~~~~~--------------------------------------l~~~~~~~~~  193 (284)
                      |+  |+.|.+++ |   |++.+++++++.+..                                      +++++++..+
T Consensus       340 ImMGtftKSfga~G---Gyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~y  416 (519)
T KOG1357|consen  340 IMMGTFTKSFGAAG---GYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRY  416 (519)
T ss_pred             eecceehhhccccc---ceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHH
Confidence            43  78898875 5   788889999987765                                      4578888888


Q ss_pred             HHHHHHhccCceeE-EEEe-------cccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHH
Q psy11784        194 LVRPLGINLHIFWC-LILL-------SITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVST  260 (284)
Q Consensus       194 l~~~L~~~~G~~~~-i~~~-------~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~  260 (284)
                      ++..|+. .|+++. .+..       -.......+.+.|+++++-+...++     -..+.||.-+..+|.|++|.+++.
T Consensus       417 fr~~l~~-~gfivyG~~dSpVvplll~~~~k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~  495 (519)
T KOG1357|consen  417 FRWELQK-MGFIVYGNNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEV  495 (519)
T ss_pred             HHHhhhc-CcEEEecCCCCCcceeeecCcccccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHH
Confidence            8888887 444432 1110       0123455688889988766553322     124679999999999999999999


Q ss_pred             HHHHHHH
Q psy11784        261 LNRIFTS  267 (284)
Q Consensus       261 l~~~l~~  267 (284)
                      ++++=+.
T Consensus       496 i~~~g~~  502 (519)
T KOG1357|consen  496 IDRVGDE  502 (519)
T ss_pred             Hhhhchh
Confidence            8877543

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.54  E-value=5.5e-13  Score=122.07  Aligned_cols=175  Identities=13%  Similarity=0.119  Sum_probs=115.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g~~pDi  155 (284)
                      ++++++.+.   +++.++++...++..|.+.+    .+++.++|+++|+++|+||+|.+|. .+. .... ...+-.--+
T Consensus       148 ~~~l~~~~~---~~~~~v~~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~~-~~~~~~~~~~vi~~  218 (361)
T PRK00950        148 VDSVLNAIT---EKTKVIFLCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EYD-YTPLALEYDNLIIG  218 (361)
T ss_pred             HHHHHHHhc---cCCCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-ccc-hHHHHHhcCCEEEE
Confidence            566666654   34555555544677888777    6788899999999999999998773 121 1111 111111123


Q ss_pred             EEeccccc-CCcceeEEEecHHHHHhchh------------------------hh----hHHHHHHHHHHHHH-hc---c
Q psy11784        156 ITVGKPMG-NGMPIGAVITSRKIAESLNC------------------------LD----DNRPSGKYLVRPLG-IN---L  202 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~~~~i~~~~~~------------------------l~----~~~~~~~~l~~~L~-~~---~  202 (284)
                      .+|||.++ .|+++|++++++++++.+..                        ++    +++++.+++.+.|. ..   .
T Consensus       219 ~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~  298 (361)
T PRK00950        219 RTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTPFSLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELPFKVYPSE  298 (361)
T ss_pred             EeehHhhcCchhhcchhcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcCeeECCCc
Confidence            38899998 68999999999998876644                        11    22233333333332 00   3


Q ss_pred             CceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        203 HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       203 G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      |.++++.+.  .....++++.|.++||++.++..+    .+.+|++..   +++++++++++|++++
T Consensus       299 ~~~i~~~~~--~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il  360 (361)
T PRK00950        299 ANFVLVDVT--PMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIV  360 (361)
T ss_pred             ceEEEEECC--CCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence            445555552  234678999999999999875432    358999744   7889999999998765

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.54  E-value=1.5e-12  Score=118.99  Aligned_cols=175  Identities=17%  Similarity=0.171  Sum_probs=123.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+..  .++++|++-..++..|.+.+    +++|.++|++||+++++|++|. +|..   .+....+  .+|++
T Consensus       113 ~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g~~---~~~~~~~--~~d~~  180 (356)
T cd06451         113 PEEIAEALEQ--HDIKAVTLTHNETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LGGE---PFRMDEW--GVDVA  180 (356)
T ss_pred             HHHHHHHHhc--cCCCEEEEeccCCCcccccC----HHHHHHHHHhcCCEEEEeeehh-ccCc---ccccccc--CccEE
Confidence            5677777752  24667776666677888776    9999999999999999999986 5421   1222222  35766


Q ss_pred             Ee--cccccCCcceeEEEecHHHHHhch-----------------------h----------------------------
Q psy11784        157 TV--GKPMGNGMPIGAVITSRKIAESLN-----------------------C----------------------------  183 (284)
Q Consensus       157 ~~--sK~l~~G~p~gav~~~~~i~~~~~-----------------------~----------------------------  183 (284)
                      +.  +|.++++..+|+++.+++.++.+.                       .                            
T Consensus       181 ~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~  260 (356)
T cd06451         181 YTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENR  260 (356)
T ss_pred             EecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHH
Confidence            54  699997667899999888765432                       0                            


Q ss_pred             hhhHHHHHHHHHHHHHhccCce------------eEEEEecccHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEEcCCC
Q psy11784        184 LDDNRPSGKYLVRPLGINLHIF------------WCLILLSITYYLYRYTRRMKEA-KIIVANEGE--YGNVLLFLPAMC  248 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~~G~~------------~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~--~~~~lr~~p~l~  248 (284)
                      .++.+++.+++.+.|++. |+-            ..+.+ +.......+++.|.++ ||.+.++..  .++++|++|+..
T Consensus       261 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~  338 (356)
T cd06451         261 WARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLV-PEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGE  338 (356)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEEC-CCCCCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCC
Confidence            124455667777777764 221            11222 2223467899999998 999986532  346999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy11784        249 LTTENVLFIVSTLNRIF  265 (284)
Q Consensus       249 ~t~~~id~~~~~l~~~l  265 (284)
                      +|++|+++++++|++++
T Consensus       339 ~~~e~v~~~~~~l~~~~  355 (356)
T cd06451         339 ATREDVLGVLSALEEAL  355 (356)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.54  E-value=6.9e-13  Score=122.92  Aligned_cols=185  Identities=10%  Similarity=0.130  Sum_probs=122.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   .++.+|++...++..|. ..+.+.+++|.++|+++++++|+||++..|-..+.............+++
T Consensus       156 ~~~l~~~i~---~~~~~v~i~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~  231 (391)
T PRK08361        156 PDELLELIT---KRTRMIVINYPNNPTGA-TLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTIL  231 (391)
T ss_pred             HHHHHHhcc---cccEEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEE
Confidence            566766665   34556666544666675 55788899999999999999999999987632221111111111122333


Q ss_pred             --Eeccccc-CCcceeEEEecHHHHHhchh--------------------h-------------hhHHHHHHHHHHHHHh
Q psy11784        157 --TVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L-------------DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       157 --~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l-------------~~~~~~~~~l~~~L~~  200 (284)
                        ++||.++ .|+++|++++++++++.+..                    +             +.++++.+.+.+.|++
T Consensus       232 ~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  311 (391)
T PRK08361        232 ANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE  311 (391)
T ss_pred             EecCchhcCCcHhhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence              7899998 78999999999888776533                    1             1234445556666655


Q ss_pred             c---------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +         .|+++++.+.+......++++.|+ ++||++.|+..+    .+++|++.  ..+++++++++++|.++++
T Consensus       312 ~~~~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~l~  389 (391)
T PRK08361        312 MPHIKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISY--ATSKEKLIEAMERMEKALE  389 (391)
T ss_pred             CCCCeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence            3         244556666321234667888887 579999986432    36899964  4578899999999988875


Q ss_pred             H
Q psy11784        267 S  267 (284)
Q Consensus       267 ~  267 (284)
                      +
T Consensus       390 ~  390 (391)
T PRK08361        390 E  390 (391)
T ss_pred             c
Confidence            4

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.53  E-value=1.3e-12  Score=121.35  Aligned_cols=179  Identities=14%  Similarity=0.149  Sum_probs=121.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEc-ceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccCC---
Q psy11784         77 AQAARNIMEAHRDNIATLICE-PVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQGA---  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~E-pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g~---  151 (284)
                      .+.+++.+.   +++.+|++- | ++-.|. ..+++-+++|.++|++||+++|.||+|..|-..+...... ...+.   
T Consensus       156 ~~~l~~~~~---~~~k~v~l~~P-~NPTG~-~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~  230 (399)
T PRK07681        156 LELIPEEIA---DKAKMMILNFP-GNPVPA-MAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEV  230 (399)
T ss_pred             HHHHHHhcc---ccceEEEEeCC-CCCcCc-CCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCccc
Confidence            455555553   345666655 6 555665 5589999999999999999999999998763223211111 11111   


Q ss_pred             CCcEEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHH
Q psy11784        152 VPDIITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       152 ~pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~  199 (284)
                      .-.+-+|||.++ .|+++|++++++++++.+..                               .+.++++.+++.+.|+
T Consensus       231 ~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~  310 (399)
T PRK07681        231 GVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFR  310 (399)
T ss_pred             EEEEeecccccCCccceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112347899998 79999999999998877643                               1134455556666666


Q ss_pred             hc--------cCceeEEEEecccHHHHHHHHHHHH-CCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        200 IN--------LHIFWCLILLSITYYLYRYTRRMKE-AKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       200 ~~--------~G~~~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      +.        .|.++++.+ +......++++.+++ +||.+.|+..+    .+++|++..  .+++++++++++|.+
T Consensus       311 ~~g~~~~~p~~g~f~~~~l-~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~  384 (399)
T PRK07681        311 TFGWNVDKPAGSMFVWAEI-PKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN  384 (399)
T ss_pred             HCCCcccCCCeeeEEEEEC-CCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            53        355666666 333346788888887 89999986432    368999654  678999999999987

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.53  E-value=2.6e-12  Score=117.39  Aligned_cols=179  Identities=15%  Similarity=0.110  Sum_probs=120.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.++++.+-.+..|. ..+.+-+++|.++|++||+++|+||+|..+. .+.........+....++
T Consensus       126 ~~~l~~~~~---~~~~~i~i~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~i~  200 (350)
T TIGR03537       126 LEKVEKSIL---EETKIVWINYPHNPTGA-TAPRSYLKETIAMCREHGIILCSDECYTEIY-FGEPPHSALEVGIENVLA  200 (350)
T ss_pred             HHHHHHhhh---hccEEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHcCcEEEEeccccccc-cCCCCCchhhcCcCCEEE
Confidence            566777665   24556666654555664 5689999999999999999999999997542 221111111112111122


Q ss_pred             --Eeccccc-CCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        157 --TVGKPMG-NGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       157 --~~sK~l~-~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                        ++||.++ .|+++|++++++++.+.+..                              .++++++.+.+.+.|++.  
T Consensus       201 ~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~g~  280 (350)
T TIGR03537       201 FHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKVGL  280 (350)
T ss_pred             EeecccccCCccccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence              5799996 58999999999888776554                              113444455555555543  


Q ss_pred             ------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 ------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                            .|+++++++ +......++++.|.++||++.++..+    .+.+|++.  ..+++++++++++|.+
T Consensus       281 ~~~~~~g~~~~~~~~-~~~~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~--~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       281 EYLYPDATFYLWVKV-PSGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVAL--VPTLEECEEALRLWER  349 (350)
T ss_pred             cccCCCeEEEEEEEC-CCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEe--cCCHHHHHHHHHHHhc
Confidence                  345566666 33335678999999999999986433    46899964  4688999999988864

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK07683 aminotransferase A; Validated

Probab=99.52  E-value=3.3e-12  Score=118.25  Aligned_cols=184  Identities=14%  Similarity=0.119  Sum_probs=120.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-CCCCc-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPD-  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-g~~pD-  154 (284)
                      .+.+++.+.   .++.++++...++..|. .++++.+++|.++|+++|+++|+||+|..+-..+. ......+ +.... 
T Consensus       151 ~~~l~~~~~---~~~~~i~i~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~v  225 (387)
T PRK07683        151 AEALENAIT---EKTRCVVLPYPSNPTGV-TLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPEMREKT  225 (387)
T ss_pred             HHHHHHhcC---cCceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccCCcCCe
Confidence            355666554   34455555544555665 55889999999999999999999999987632222 1111111 22222 


Q ss_pred             --EEEeccccc-CCcceeEEEecHHHHHhchh--------------------h-----------hhHHHHHHHHHHHHHh
Q psy11784        155 --IITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L-----------DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 --iv~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l-----------~~~~~~~~~l~~~L~~  200 (284)
                        +.++||.++ .|+++|++++++++++.+..                    +           ++++++.+++.+.|++
T Consensus       226 i~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  305 (387)
T PRK07683        226 IVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS  305 (387)
T ss_pred             EEEeeccccccCccceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence              236899999 79999999999998876643                    1           1334555566666654


Q ss_pred             c--------cCceeEEEEecccHHHHHHHHH-HHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLSITYYLYRYTRR-MKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       201 ~--------~G~~~~i~~~~~~~~~~~~~~~-l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      .        .|+++++.+.+......+++.. +.++||.+.|+..+    .+++|++.  ..+++++.+++++|.+++++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~--~~~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        306 MGLDVEKPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSY--AYSIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             cCCcccCCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHh
Confidence            3        2344444442112234566665 45789999986432    46899964  45899999999999988764

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.52  E-value=3.9e-12  Score=117.98  Aligned_cols=185  Identities=14%  Similarity=0.173  Sum_probs=123.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-CCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-g~~pDi  155 (284)
                      .+.+++.+.   .++.+|++...+...|. ..+.+.+++|.++|+++|+++|+||++.+|...+........+ +..+.+
T Consensus       152 ~~~l~~~~~---~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~  227 (397)
T PRK07568        152 KEEIEKLIT---PKTKAILISNPGNPTGV-VYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRV  227 (397)
T ss_pred             HHHHHHhcC---ccceEEEEECCCCCCCc-cCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCE
Confidence            456666654   34556654433455564 6688889999999999999999999999885444311121111 223344


Q ss_pred             E---Eeccccc-CCcceeEEEec-HHHHHhchh-------------------h-----------hhHHHHHHHHHHHHHh
Q psy11784        156 I---TVGKPMG-NGMPIGAVITS-RKIAESLNC-------------------L-----------DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       156 v---~~sK~l~-~G~p~gav~~~-~~i~~~~~~-------------------l-----------~~~~~~~~~l~~~L~~  200 (284)
                      +   ++||.++ .|+++|+++++ +++++.+..                   +           +.++++.+.+.+.|++
T Consensus       228 i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  307 (397)
T PRK07568        228 IIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNK  307 (397)
T ss_pred             EEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3   7899998 49999999985 667654322                   1           1345556666677765


Q ss_pred             c---------cCceeEEEEecccHHHHHHHHHHHH------CCcEEeecCCC-------CCEEEEEcCCCCCHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSITYYLYRYTRRMKE------AKIIVANEGEY-------GNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~~~~~~~~~~~l~~------~Gv~~~~~~~~-------~~~lr~~p~l~~t~~~id~~~  258 (284)
                      .         .|+++++.+. . ....++++.|.+      +||++.|+..+       .+.+|++.  ..+++++++++
T Consensus       308 ~~~~~~~~p~g~~~~~~~l~-~-~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~--~~~~~~~~~~~  383 (397)
T PRK07568        308 IPGVVCEKPKGAFYIIAKLP-V-DDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAY--VLNEEDLKRAM  383 (397)
T ss_pred             CCCceecCCCcceEEEEecC-C-CCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEE--eCCHHHHHHHH
Confidence            3         3344566663 2 135677777765      69999986432       36899974  46789999999


Q ss_pred             HHHHHHHHHHh
Q psy11784        259 STLNRIFTSLQ  269 (284)
Q Consensus       259 ~~l~~~l~~~~  269 (284)
                      ++|.+++++..
T Consensus       384 ~~l~~~l~~~~  394 (397)
T PRK07568        384 EILKEALEKYN  394 (397)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.52  E-value=2.8e-12  Score=119.01  Aligned_cols=176  Identities=15%  Similarity=0.086  Sum_probs=122.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++..|++.-+++..|.+.+    +++|.++|++||+++|+|++|+ +|..     ........+|+.
T Consensus       147 ~~~l~~~i~---~~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~-----~~~~~~~~~d~~  213 (398)
T TIGR03392       147 IRQLPELLT---PRTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG-----PPDVQALDIDFY  213 (398)
T ss_pred             HHHHHHHhc---cCceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC-----CCChhhcCCCEE
Confidence            567777764   35677777777888888877    8999999999999999999996 3221     111123457999


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhch------------------------h---------------------------
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESLN------------------------C---------------------------  183 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~~------------------------~---------------------------  183 (284)
                      ++|  |.++. ..+|++++++++.+.+.                        .                           
T Consensus       214 ~~s~~K~~gp-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~  292 (398)
T TIGR03392       214 AFSGHKLYGP-TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIA  292 (398)
T ss_pred             EEecccccCC-CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHH
Confidence            888  96642 24889989888765431                        0                           


Q ss_pred             --hhhHHHHHHHHHHHHHhccC---------ceeEEEEecccHHHHHHHHHHHHCCcEEeecCC----------CCCEEE
Q psy11784        184 --LDDNRPSGKYLVRPLGINLH---------IFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----------YGNVLL  242 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~~G---------~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~~~lr  242 (284)
                        .++..++.+++.+.|+++.|         .++.+.+ + ......+.+.|.++||.++++..          ..+.+|
T Consensus       293 ~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~-~-~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iR  370 (398)
T TIGR03392       293 AAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDF-A-GVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLR  370 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEe-C-CcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEE
Confidence              12344455666666665412         2333333 1 22356788889999999986531          146899


Q ss_pred             EEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        243 FLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       243 ~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +++....|++|++.+++.|+++++.+
T Consensus       371 vS~~~~~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       371 ASFAPYNTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             EEeeccCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999987754

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.52  E-value=9e-13  Score=121.31  Aligned_cols=171  Identities=13%  Similarity=0.139  Sum_probs=115.3

Q ss_pred             CeeEEEE-cceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE---EEeccccc-C
Q psy11784         90 NIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI---ITVGKPMG-N  164 (284)
Q Consensus        90 ~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi---v~~sK~l~-~  164 (284)
                      ++.++++ .| ++..|. ..|.+.++++.++|++ |++||+||++..|+..|. .....  ...|++   -+|||.++ .
T Consensus       155 ~~~~i~l~~P-~NPtG~-~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~-~~~~~--~~~~~~i~~~SfSK~~g~~  228 (369)
T PRK08153        155 NAPLVYLANP-DNPMGS-WHPAADIVAFIEALPE-TTLLVLDEAYCETAPAGA-APPID--TDDPNVIRMRTFSKAYGLA  228 (369)
T ss_pred             CCcEEEEeCC-CCCCCC-CCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCccc-chhhh--hcCCCEEEEecchHhccCc
Confidence            4555544 56 443565 4577778888888874 999999999998865443 21111  123453   37899998 7


Q ss_pred             CcceeEEEecHHHHHhchh------------------------h----hhHHHHHHHHHHHHHhc-------cCceeEEE
Q psy11784        165 GMPIGAVITSRKIAESLNC------------------------L----DDNRPSGKYLVRPLGIN-------LHIFWCLI  209 (284)
Q Consensus       165 G~p~gav~~~~~i~~~~~~------------------------l----~~~~~~~~~l~~~L~~~-------~G~~~~i~  209 (284)
                      |+++|++++++++++.+..                        +    +.++++.+++.+.|++.       .|.++.++
T Consensus       229 GlRiG~~v~~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~p~~~~f~~~~  308 (369)
T PRK08153        229 GARVGYAIGAPGTIKAFDKVRNHFGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARANGLTPLPSATNFVAID  308 (369)
T ss_pred             chheeeeecCHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCcCcEEEEE
Confidence            9999999999999876654                        1    13334444555555543       34455555


Q ss_pred             EecccHHHHHHHHHHHHCCcEEe-ecCC-CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        210 LLSITYYLYRYTRRMKEAKIIVA-NEGE-YGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       210 ~~~~~~~~~~~~~~l~~~Gv~~~-~~~~-~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      +..+...+..+.++|+++||.++ |+.. ..+++|++..   ++++++.+++.|++++..++
T Consensus       309 ~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---~~~~~~~~~~al~~~~~~~~  367 (369)
T PRK08153        309 CGRDGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---PDEELDLFAEALPEALEAAR  367 (369)
T ss_pred             CCCCcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHHHhh
Confidence            42223457789999999999996 4322 2468999743   89999999999999987654

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.51  E-value=3.8e-13  Score=122.68  Aligned_cols=166  Identities=13%  Similarity=0.087  Sum_probs=105.5

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccC--ccccCccccccccCCCCcEE--EecccccCC
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGM--GRSGSHFWAFQTQGAVPDII--TVGKPMGNG  165 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~--gr~G~~~~a~~~~g~~pDiv--~~sK~l~~G  165 (284)
                      +...|++++ .++.|.+. +++.|++|.++|++||+++|+||+|..+  |..|. . ....++  +|++  ++||+++ |
T Consensus       136 ~~~lIiitg-~s~~G~v~-~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~-~-~~~~~~--~divv~s~SKala-G  208 (346)
T TIGR03576       136 GTSLVVITG-STMDLKVV-SEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQ-P-PALDLG--ADLVVTSTDKLMD-G  208 (346)
T ss_pred             CceEEEEEC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEECCccccccccCCC-C-CHHHcC--CcEEEeccchhcc-c
Confidence            355677776 47777754 5788999999999999999999999732  21232 1 112233  4554  7899775 4


Q ss_pred             cceeEEEecHHHHHhchh--------------------h---------hhHHHHHHHHHHHHHhc-----cCceeEEEEe
Q psy11784        166 MPIGAVITSRKIAESLNC--------------------L---------DDNRPSGKYLVRPLGIN-----LHIFWCLILL  211 (284)
Q Consensus       166 ~p~gav~~~~~i~~~~~~--------------------l---------~~~~~~~~~l~~~L~~~-----~G~~~~i~~~  211 (284)
                      +.+|++++++++++.+..                    +         +.++++.+++.+.++.+     .+-++.+.+.
T Consensus       209 ~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~~~~~~~~~~f~~~~~~  288 (346)
T TIGR03576       209 PRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKLNVERTPTGFVIKGVE  288 (346)
T ss_pred             cceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhCCCCcCCCeEEEEeCC
Confidence            578999999999887765                    1         13444444455555443     1113444442


Q ss_pred             cccHHHHHHHHHHHHCCcEEeecCCC---CCEEEEEcCCCCCHH---HHHHHHHHHHHHH
Q psy11784        212 SITYYLYRYTRRMKEAKIIVANEGEY---GNVLLFLPAMCLTTE---NVLFIVSTLNRIF  265 (284)
Q Consensus       212 ~~~~~~~~~~~~l~~~Gv~~~~~~~~---~~~lr~~p~l~~t~~---~id~~~~~l~~~l  265 (284)
                       .........+.|.++||++.|+..+   .+++||+.  ...++   +.+.+++.|++.+
T Consensus       289 -~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~--~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       289 -EEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDL--AAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             -CCCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEE--ecChHHhcCHHHHHHHHHhcc
Confidence             1111234445566789999986432   57899963  43443   6899998887654

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK08912 hypothetical protein; Provisional

Probab=99.51  E-value=3.2e-12  Score=118.24  Aligned_cols=184  Identities=18%  Similarity=0.136  Sum_probs=123.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc-ccccCCC-Cc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA-FQTQGAV-PD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a-~~~~g~~-pD  154 (284)
                      .+.+++.+.   +++.+|++...++..|. ..+.+.+++|.++|++|++++|+||+|..+-..+...-. ....+.. .+
T Consensus       149 ~~~l~~~~~---~~~~~v~l~~p~NPtG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  224 (387)
T PRK08912        149 RAALAAAFS---PRTKAVLLNNPLNPAGK-VFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERT  224 (387)
T ss_pred             HHHHHHHhC---ccceEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCce
Confidence            466666664   34555555433565665 557889999999999999999999999765322310111 1111221 22


Q ss_pred             E--EEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        155 I--ITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 i--v~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +  -++||.++ .|+++|++++++++++.+..                               .++++++.+++.+.|++
T Consensus       225 i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  304 (387)
T PRK08912        225 VKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRR  304 (387)
T ss_pred             EEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3  36899999 89999999999998876643                               12455566666666665


Q ss_pred             c--------cCceeEEEEec-c-cHHHHHHHHHHH-HCCcEEeecCCC------CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLS-I-TYYLYRYTRRMK-EAKIIVANEGEY------GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       201 ~--------~G~~~~i~~~~-~-~~~~~~~~~~l~-~~Gv~~~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .        .|+++++.+.+ . .....++++.|+ ++||++.|+..+      .+++|++..  .+++++++++++|.+
T Consensus       305 ~g~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~--~~~~~l~~~l~rl~~  382 (387)
T PRK08912        305 IGFPVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA--KRDATLDEAVERLAA  382 (387)
T ss_pred             CCCcccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence            3        34556666632 1 234677888876 579999986432      368999755  578999999999988


Q ss_pred             HHH
Q psy11784        264 IFT  266 (284)
Q Consensus       264 ~l~  266 (284)
                      +++
T Consensus       383 ~l~  385 (387)
T PRK08912        383 ARR  385 (387)
T ss_pred             HHh
Confidence            775

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.51  E-value=1.4e-12  Score=118.34  Aligned_cols=170  Identities=16%  Similarity=0.210  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +.-+.+++.| .+..|. .++.+.+++|.++|++||+++|+||+|.+|..... ...  ..+..++++
T Consensus       116 ~~~l~~~~~---~~~~v~i~~p-~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~--~~~~~~~~i  187 (330)
T TIGR01140       116 LDRLPAALE---ELDVLVLCNP-NNPTGR-LIPPETLLALAARLRARGGWLVVDEAFIDFTPDAS-LAP--QAARFPGLV  187 (330)
T ss_pred             HHHHHhhcc---cCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHhHhcCCEEEEECcccccCCccc-hhh--HhccCCCEE
Confidence            466666653   1124445566 455565 56899999999999999999999999987743211 111  112223333


Q ss_pred             ---Eeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 ---TVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ---~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                         ++||.++ .|+++|++++++++++.+..                            .++++++.+++.+.|++.   
T Consensus       188 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  267 (330)
T TIGR01140       188 VLRSLTKFFGLAGLRLGFVVAHPALLARLREALGPWTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGL  267 (330)
T ss_pred             EEEecchhhcCchhhhhheeCCHHHHHHHHhcCCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence               7899998 78999999999998887654                            224556666666666654   


Q ss_pred             -----cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        202 -----LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       202 -----~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                           .|.+.++.+.    ...+++++|+++||++.++..+    .+.+|+..+  ...++ +.++++|
T Consensus       268 ~~~~~~~~f~~~~~~----~~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~-~~~~~~l  329 (330)
T TIGR01140       268 EVVGGTALFLLVRTP----DAAALHEALARRGILIRDFDNFPGLDPRYLRFALP--TDEEN-DRLEEAL  329 (330)
T ss_pred             eECCCCCeEEEEEcC----CHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEec--CHHHH-HHHHHhh
Confidence                 4556666652    2467999999999999987554    268999654  33344 7666655

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK12414 putative aminotransferase; Provisional

Probab=99.51  E-value=4e-12  Score=117.62  Aligned_cols=181  Identities=10%  Similarity=0.092  Sum_probs=119.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g~~pDi  155 (284)
                      .+.+++.++   +++.+|++...++-.|. ..+++.+++|.++|++||+++|+||+|..|-..|...-.. ...+....+
T Consensus       152 ~~~l~~~l~---~~~~~v~i~~p~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~  227 (384)
T PRK12414        152 WDEVAAAIT---PRTRMIIVNTPHNPSAT-VFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERS  227 (384)
T ss_pred             HHHHHhhcC---cccEEEEEcCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcE
Confidence            456666654   35666766544666676 4578899999999999999999999998653233211011 111222222


Q ss_pred             ---EEeccccc-CCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        156 ---ITVGKPMG-NGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       156 ---v~~sK~l~-~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                         .+|||.++ .|+++|++++++++++.+..                              .+.++++.+.+.+.|++.
T Consensus       228 i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  307 (384)
T PRK12414        228 VIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS  307 (384)
T ss_pred             EEEecccccccCccceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence               36899997 79999999999998776544                              124556666677777653


Q ss_pred             --------cCceeEEEEecc-cHHHHHHH-HHHHHCCcEEeecCCC------CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 --------LHIFWCLILLSI-TYYLYRYT-RRMKEAKIIVANEGEY------GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 --------~G~~~~i~~~~~-~~~~~~~~-~~l~~~Gv~~~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                              .|+++++.+.+. .....+++ +.|.++||.+.|+..+      .+.+|++..  .+++++++++++|.+
T Consensus       308 g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~~~rl~~  383 (384)
T PRK12414        308 RFELLPSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KDDATLVEGARRLCS  383 (384)
T ss_pred             CCeecCCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence                    344555555310 11234555 4566889999987532      368999755  479999999998864

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.50  E-value=3.5e-12  Score=117.81  Aligned_cols=180  Identities=13%  Similarity=0.146  Sum_probs=119.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc----CCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ----GAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~----g~~  152 (284)
                      ++++++.+.   +++.+|++..-++-.|. .++.+.+++|.++|++||+++|+||+|..+...+.........    +..
T Consensus       154 ~~~l~~~~~---~~~~~v~i~~P~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~  229 (383)
T TIGR03540       154 FDAIPEDIA---KKAKLMFINYPNNPTGA-VAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVG  229 (383)
T ss_pred             HHHHHhhcc---ccceEEEEeCCCCCcCc-cCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCE
Confidence            455655553   34666666533555665 5689999999999999999999999998653333111111111    112


Q ss_pred             CcEEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        153 PDIITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       153 pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      -.+.+|||.+| .|+++|++++++++++.+..                               .+.++++.+.+.+.|++
T Consensus       230 i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  309 (383)
T TIGR03540       230 IEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKK  309 (383)
T ss_pred             EEEEecccccCCccceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            23458999997 68999999999988876643                               11344555566666665


Q ss_pred             c--------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       201 ~--------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .        .|+++++.+ ++.....++++.|+ ++||.+.++..+    .+.+|++.  ..+++++.+++++|.+
T Consensus       310 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       310 IGIDVEKPKATFYVWVPV-PEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISL--TVPDERLEEAVARIKK  382 (383)
T ss_pred             CCCEecCCCcceEEEEEC-CCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEe--cCCHHHHHHHHHHHhh
Confidence            3        344566666 33335678888876 689999986432    35899975  4678888888887753

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.50  E-value=6e-12  Score=116.60  Aligned_cols=181  Identities=16%  Similarity=0.094  Sum_probs=121.1

Q ss_pred             HHHHHHHHHhc----CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         77 AQAARNIMEAH----RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~----~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                      .+++++.++..    .+++.+|+++.+.++.|...+    +++|.++|++||+++|+|++|+ +|..+   +....+|+.
T Consensus       141 ~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~---~~~~~~g~D  212 (387)
T PRK09331        141 PEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMP---VDGKKLGAD  212 (387)
T ss_pred             HHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcC---CCHHHcCCC
Confidence            56777777632    245888999988888888777    9999999999999999999996 33222   122233443


Q ss_pred             CcEEEecccccCCcceeEEEecHHHHHhchh----------------------------h----------hhHHHHHHHH
Q psy11784        153 PDIITVGKPMGNGMPIGAVITSRKIAESLNC----------------------------L----------DDNRPSGKYL  194 (284)
Q Consensus       153 pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~----------------------------l----------~~~~~~~~~l  194 (284)
                      -.+.+++|+++++.++|++++++++++.+..                            +          ++..++.+++
T Consensus       213 ~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l  292 (387)
T PRK09331        213 FIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWF  292 (387)
T ss_pred             EEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344678999877789999999987765311                            1          1234556667


Q ss_pred             HHHHHhccCceeE-----------EEEecc--------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHH
Q psy11784        195 VRPLGINLHIFWC-----------LILLSI--------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       195 ~~~L~~~~G~~~~-----------i~~~~~--------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id  255 (284)
                      ++.|+++.|+-+.           ++. +.        ...+..+.+.|.++||...+.+ .+..+|+. ++.+|++|++
T Consensus       293 ~~~L~~l~g~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~-~~~i~ri~-~~g~t~~di~  369 (387)
T PRK09331        293 VDELEKIEGFKQLGEKPRNHDLMKFET-PSFDEIAKKHKRRGFFLYEELKKRGIHGIKPG-ATKEFKLS-TYGLTWEQVE  369 (387)
T ss_pred             HHHHhcCCCEEEeccCcCcCCeEEEeC-CchhHHhhhccccchhHHHHHHHcCceEEccC-CceEEEEE-eccCCHHHHH
Confidence            7777764343211           111 10        1123568899999999854322 12344554 5668999999


Q ss_pred             HHHHHHHHHHHHH
Q psy11784        256 FIVSTLNRIFTSL  268 (284)
Q Consensus       256 ~~~~~l~~~l~~~  268 (284)
                      .+++.|++++++.
T Consensus       370 ~l~~aL~~i~~~~  382 (387)
T PRK09331        370 YVADAFKEIAEKY  382 (387)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887653

>PRK08175 aminotransferase; Validated

Probab=99.50  E-value=2.2e-12  Score=119.75  Aligned_cols=188  Identities=11%  Similarity=0.102  Sum_probs=127.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD--  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD--  154 (284)
                      .+++++.++...+.+.+|++...++..|. ..+.+.+++|.++|++||+++|+||++..+-..|..........-.+|  
T Consensus       151 ~~~l~~~l~~~~~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~  229 (395)
T PRK08175        151 FNELERAIRESYPKPKMMILGFPSNPTAQ-CVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVA  229 (395)
T ss_pred             HHHHHHHHhhccCCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCE
Confidence            56677777644445777777644555664 568899999999999999999999999866322321111111111123  


Q ss_pred             --EEEeccccc-CCcceeEEEecHHHHHhchh--------------------h-----------hhHHHHHHHHHHHHHh
Q psy11784        155 --IITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L-----------DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 --iv~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l-----------~~~~~~~~~l~~~L~~  200 (284)
                        +.+|||.++ .|+++|++++++++++.+..                    +           +.++++.+++.+.|+.
T Consensus       230 i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  309 (395)
T PRK08175        230 VEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHE  309 (395)
T ss_pred             EEEeeccccccCcchhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              347899996 68999999999999887644                    1           1233445556666655


Q ss_pred             c--------cCceeEEEEecc--cHHHHHHHHHHH-HCCcEEeecCC----CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLSI--TYYLYRYTRRMK-EAKIIVANEGE----YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       201 ~--------~G~~~~i~~~~~--~~~~~~~~~~l~-~~Gv~~~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      .        .|+++++++...  .....+++++++ ++||.+.++..    ..+.+|++.  ..+++.+.+++++|.+++
T Consensus       310 ~~~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~--~~~~~~~~~al~~l~~~l  387 (395)
T PRK08175        310 AGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL--IENRDRIRQAIRGIKAMF  387 (395)
T ss_pred             cCCcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHH
Confidence            3        456677776321  113577888776 67999998633    236899975  468899999999998888


Q ss_pred             HH
Q psy11784        266 TS  267 (284)
Q Consensus       266 ~~  267 (284)
                      ++
T Consensus       388 ~~  389 (395)
T PRK08175        388 RA  389 (395)
T ss_pred             Hh
Confidence            64

>PRK09082 methionine aminotransferase; Validated

Probab=99.50  E-value=1.5e-12  Score=120.53  Aligned_cols=181  Identities=11%  Similarity=0.071  Sum_probs=122.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc-ccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA-FQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a-~~~~g~~pDi  155 (284)
                      .+++++.+.   +++.+|++...++..|.. ++++.+++|.++|++||+++|+||+|..+-..+...-+ ....+..+.+
T Consensus       153 ~~~l~~~~~---~~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~  228 (386)
T PRK09082        153 WQRFAAAIS---PRTRLIILNTPHNPSGTV-WSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERA  228 (386)
T ss_pred             HHHHHHhcC---ccceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcE
Confidence            466666664   356667776556666764 47889999999999999999999999765322221111 1122222232


Q ss_pred             ---EEeccccc-CCcceeEEEecHHHHHhchh--------------------h-----------hhHHHHHHHHHHHHHh
Q psy11784        156 ---ITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L-----------DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       156 ---v~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l-----------~~~~~~~~~l~~~L~~  200 (284)
                         -+|||.++ .|+++|++++++++++.+..                    +           +.++++.+++.+.|++
T Consensus       229 i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  308 (386)
T PRK09082        229 FVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALAN  308 (386)
T ss_pred             EEEeechhhccchhhhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence               37899997 68999999999998876654                    1           1234556666667665


Q ss_pred             c--------cCceeEEEEec-ccHHHHHHHHHH-HHCCcEEeecCCC------CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLS-ITYYLYRYTRRM-KEAKIIVANEGEY------GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       201 ~--------~G~~~~i~~~~-~~~~~~~~~~~l-~~~Gv~~~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .        .|+++++.+.. ......++++.| .++||.+.|+..+      .+++|++..  .+++++++++++|.+
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~--~~~~~l~~~~~rl~~  385 (386)
T PRK09082        309 SRFKLLPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA--KQEETLDAAAERLCQ  385 (386)
T ss_pred             CCCcccCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence            3        35566667631 123467788876 4779999987532      368999754  589999999998864

>PRK08068 transaminase; Reviewed

Probab=99.50  E-value=5.5e-12  Score=116.84  Aligned_cols=179  Identities=14%  Similarity=0.141  Sum_probs=119.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEc-ceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc-ccccCCCC-
Q psy11784         77 AQAARNIMEAHRDNIATLICE-PVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA-FQTQGAVP-  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~E-pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a-~~~~g~~p-  153 (284)
                      ++++++.+.   .++.+|++- | .+-.|. .++.+.+++|.++|++||+++|+||+|..|...+..... ....+..+ 
T Consensus       157 ~~~l~~~~~---~~~~~v~l~~P-~NPTG~-~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~  231 (389)
T PRK08068        157 YTKIPEEVA---EKAKLMYLNYP-NNPTGA-VATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDV  231 (389)
T ss_pred             HHHHHHhcc---ccceEEEEECC-CCCCCC-cCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCC
Confidence            455555553   345555554 6 455665 668999999999999999999999999866444421111 12122222 


Q ss_pred             --cEEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHH
Q psy11784        154 --DIITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       154 --Div~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~  199 (284)
                        .+.+|||.++ .|+++|++++++++++.+..                               .+.++++.+++.+.|+
T Consensus       232 ~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~  311 (389)
T PRK08068        232 GIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACR  311 (389)
T ss_pred             EEEEecchhccCCccceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2347899997 79999999999998877654                               1234555566666666


Q ss_pred             hc--------cCceeEEEEecccHHHHHHHHHHHH-CCcEEeecCC----CCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        200 IN--------LHIFWCLILLSITYYLYRYTRRMKE-AKIIVANEGE----YGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       200 ~~--------~G~~~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      +.        .|+++++.+ +......++++.|++ +||++.++..    ..+++|++..  .+++.+.+++++|.+
T Consensus       312 ~~g~~~~~~~g~~~~~v~~-~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~  385 (389)
T PRK08068        312 EIGWEVDAPKGSFFAWMPV-PKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL--TDEERLREAVERIGK  385 (389)
T ss_pred             HCCCcccCCCeeEEEEEEC-CCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence            53        234456666 333356789999986 6999988632    2468999764  567777777777754

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.49  E-value=3.5e-12  Score=118.04  Aligned_cols=172  Identities=10%  Similarity=0.085  Sum_probs=116.5

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc-cccccccCCC-Cc---EEEeccccc-
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH-FWAFQTQGAV-PD---IITVGKPMG-  163 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~-~~a~~~~g~~-pD---iv~~sK~l~-  163 (284)
                      ++.+|++-+-++-.|. ..+.+.+++|.++|++||+++|.||+|..|-..+.. .-......-. +.   +-+|||.++ 
T Consensus       165 ~~k~i~l~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~  243 (388)
T PRK07366        165 QARLMVLSYPHNPTTA-IAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNM  243 (388)
T ss_pred             cceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCC
Confidence            4556666665666676 568999999999999999999999999877333320 1111111111 12   238999997 


Q ss_pred             CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc--------cCc
Q psy11784        164 NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN--------LHI  204 (284)
Q Consensus       164 ~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~--------~G~  204 (284)
                      .|+++|++++++++++.+..                               .+.++++.+++.+.|++.        .|+
T Consensus       244 ~GlRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~  323 (388)
T PRK07366        244 GGFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATM  323 (388)
T ss_pred             cchhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeE
Confidence            79999999999998876643                               113445555666666553        455


Q ss_pred             eeEEEEecc-cHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        205 FWCLILLSI-TYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       205 ~~~i~~~~~-~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      ++++.+.+. .....++++.++ ++||.+.|+..+    .+++|++.  ..+++++++++++|.++
T Consensus       324 f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~l~rl~~~  387 (388)
T PRK07366        324 YVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFAL--VHDPDILEEAVERIAAF  387 (388)
T ss_pred             EEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEe--cCCHHHHHHHHHHHHHh
Confidence            666766311 113567777775 679999987432    36899964  45799999999999765

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.49  E-value=1.8e-12  Score=121.72  Aligned_cols=179  Identities=12%  Similarity=0.077  Sum_probs=125.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceec-CCCcccCChhHHHHHHHHHHHh-CCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFV-VHGAVVPPPGWLSLMYDYIHEI-GGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~-~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+.+++.++   .++.++++-|-+. -.|. ..+.+.+++|.++|++| ++++|.||+|..|...+.  ... .....+.
T Consensus       201 ~~~l~~~~~---~~~k~i~~~p~p~NPTG~-~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~--~~~-~~~~~~~  273 (431)
T PRK15481        201 PEKLERALA---QGARAVILTPRAHNPTGC-SLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY--HSV-IPQTTQR  273 (431)
T ss_pred             HHHHHHHHh---cCCCEEEECCCCCCCCCc-cCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC--CCC-CcCCCCC
Confidence            567777775   2466677766544 4565 55899999999999999 999999999987732221  111 0011233


Q ss_pred             E---EEecccccCCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHH
Q psy11784        155 I---ITVGKPMGNGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       155 i---v~~sK~l~~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L  198 (284)
                      +   -+|||.++.|+++|++++++++++.+..                                 .+.++++.+++.+.|
T Consensus       274 vi~~~SfSK~~~~GlRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L  353 (431)
T PRK15481        274 WALIRSVSKALGPDLRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARAL  353 (431)
T ss_pred             EEEEeeeccccCCCceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   3789999999999999999988776643                                 113444555566666


Q ss_pred             Hhc--------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC-----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        199 GIN--------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY-----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       199 ~~~--------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      ++.        .|+++++.+. .  ...++++.|.++||.+.|+..+     ++.+|++... .+++++++++++|.+++
T Consensus       354 ~~~~~~~~~p~gg~f~~~~l~-~--~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~  429 (431)
T PRK15481        354 QQYGIAIPSPGDGLNLWLPLD-T--DSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEINRLAADLHQAL  429 (431)
T ss_pred             HHcCCccccCCCeEEEEEECC-C--CHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHHHHHHHHHHHHh
Confidence            543        4566677663 2  3567888899999999986543     2579997654 47999999999999886


Q ss_pred             H
Q psy11784        266 T  266 (284)
Q Consensus       266 ~  266 (284)
                      +
T Consensus       430 ~  430 (431)
T PRK15481        430 N  430 (431)
T ss_pred             c
Confidence            4

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.49  E-value=3.2e-12  Score=117.06  Aligned_cols=177  Identities=14%  Similarity=0.009  Sum_probs=114.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC-cE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP-DI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p-Di  155 (284)
                      ++.+++.+.   +++.++++...++..|...+ .+.+.++.+.|+ +|+++|+||+|..|-..+.........+-.+ .+
T Consensus       141 ~~~l~~~~~---~~~~~v~i~~p~NPtG~~~~-~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi  215 (359)
T PRK03158        141 LEAMLKAID---EQTKIVWICNPNNPTGTYVN-HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLI  215 (359)
T ss_pred             HHHHHHhcC---CCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEE
Confidence            455655553   35666776666888888665 444445544442 6999999999986632221001111111112 23


Q ss_pred             --EEeccccc-CCcceeEEEecHHHHHhchh------------------------h----hhHHHHHHHHHHHHHhc---
Q psy11784        156 --ITVGKPMG-NGMPIGAVITSRKIAESLNC------------------------L----DDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       156 --v~~sK~l~-~G~p~gav~~~~~i~~~~~~------------------------l----~~~~~~~~~l~~~L~~~---  201 (284)
                        .+|||.++ .|+++|++++++++++.+..                        +    +..++..+++.+.|++.   
T Consensus       216 ~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  295 (359)
T PRK03158        216 VLRTFSKAYGLAALRVGYGIASEELIEKLNIARPPFNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEYGLF  295 (359)
T ss_pred             EEEechHhhcCcchhhehhcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence              38999998 69999999999998887654                        1    12334444555555542   


Q ss_pred             ----cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        202 ----LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       202 ----~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                          .|.++++.+.   ....++++.|.++||++.++..+  .+++|++.   .++++.+.++++|+++
T Consensus       296 ~~~~~g~~i~~~~~---~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~---~~~~~~~~l~~al~~~  358 (359)
T PRK03158        296 YYPSQTNFIFVDTG---RDANELFEALLKKGYIVRSGAALGFPTGVRITI---GLKEQNDKIIELLKEL  358 (359)
T ss_pred             eCCCcCcEEEEECC---CCHHHHHHHHHHCCeEEeeCCCCCCCCeEEEec---CCHHHHHHHHHHHHHh
Confidence                4556666552   23568899999999999986433  47899963   3899999999999875

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.49  E-value=1.7e-11  Score=114.08  Aligned_cols=188  Identities=11%  Similarity=0.116  Sum_probs=126.3

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc---
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD---  154 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD---  154 (284)
                      +.++++++....++.++++-.-+.-.|. .+|.+-+++|.++|++|++++|.||+|..+-..+..........-.+|   
T Consensus       163 ~~l~~~~~~~~~~~~~i~~~~P~NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i  241 (403)
T PRK08636        163 ENLEKALRESSPKPKYVVVNFPHNPTTA-TVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAV  241 (403)
T ss_pred             hHHHHHHhhccCCceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEE
Confidence            4567777654455666666532555565 568999999999999999999999999876322321111111111223   


Q ss_pred             -EEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        155 -IITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       155 -iv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                       +.+|||.++ .|+++|++++++++++.+..                               .+.++++.+.+.+.|++.
T Consensus       242 ~~~S~SK~~~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (403)
T PRK08636        242 ESYTLSKSYNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFANA  321 (403)
T ss_pred             EEEecccccCCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence             235899996 79999999999998876543                               112344455566666552


Q ss_pred             --------cCceeEEEEecc--cHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 --------LHIFWCLILLSI--TYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 --------~G~~~~i~~~~~--~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                              .|+++++.+.+.  .....++++.++ ++||.+.|+..+    .+.+|++..  .+++++++++++|.++++
T Consensus       322 ~~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~  399 (403)
T PRK08636        322 GWELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLK  399 (403)
T ss_pred             CCcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence                    566777777311  113567877755 689999987432    468999764  689999999999999886


Q ss_pred             HH
Q psy11784        267 SL  268 (284)
Q Consensus       267 ~~  268 (284)
                      ..
T Consensus       400 ~~  401 (403)
T PRK08636        400 EL  401 (403)
T ss_pred             hh
Confidence            63

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.49  E-value=5.9e-12  Score=116.99  Aligned_cols=176  Identities=16%  Similarity=0.088  Sum_probs=122.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++++++.+.   +++.+|++..+.+..|...+    +++|.++|+++|+++|+|++|+ +|..     ........+|++
T Consensus       150 ~~~l~~~i~---~~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~-----~~~~~~~~~d~~  216 (401)
T PRK10874        150 VDLLPELIT---PRTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHF-----PADVQALDIDFY  216 (401)
T ss_pred             HHHHHHhcC---cCcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-cccc-----cCCchhcCCCEE
Confidence            567777664   45677888878888888887    8999999999999999999996 3221     112223458887


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhch----------------------------------h-----------------
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESLN----------------------------------C-----------------  183 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~~----------------------------------~-----------------  183 (284)
                      ++|  |.+|. -.+|++++++++.+.+.                                  .                 
T Consensus       217 ~~s~~K~~gp-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~  295 (401)
T PRK10874        217 AFSGHKLYGP-TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDIN  295 (401)
T ss_pred             EEecccccCC-CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHH
Confidence            766  96542 23688889888766432                                  0                 


Q ss_pred             --hhhHHHHHHHHHHHHHhccCc---------eeEEEEecccHHHHHHHHHHHHCCcEEeecCC----------CCCEEE
Q psy11784        184 --LDDNRPSGKYLVRPLGINLHI---------FWCLILLSITYYLYRYTRRMKEAKIIVANEGE----------YGNVLL  242 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~~G~---------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~~~lr  242 (284)
                        .++.++..+++.+.|+++.|+         ++.+.+.  .....++.+.|.++||.++++..          ..+.+|
T Consensus       296 ~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~--~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iR  373 (401)
T PRK10874        296 QAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFA--GVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLR  373 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEEC--CcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEE
Confidence              123344566666777654222         3334432  12346788889999999987532          136899


Q ss_pred             EEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        243 FLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       243 ~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +++....|++|+|.+++.|+++++.+
T Consensus       374 iS~~~~nt~edid~ll~al~~~~~~~  399 (401)
T PRK10874        374 ASFAPYNTQSDVDALVNAVDRALELL  399 (401)
T ss_pred             EEecccCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999987754

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.49  E-value=3.9e-12  Score=117.57  Aligned_cols=180  Identities=12%  Similarity=0.129  Sum_probs=119.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cc---cCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QT---QGAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~---~g~~  152 (284)
                      ++++++.+.   .++.+|++.+-++-.|. ..+.+.+++|.++|++||+++|+||+|..|...|...-.. ..   .+..
T Consensus       156 ~~~l~~~~~---~~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  231 (385)
T PRK09276        156 LDAIPEDVA---KKAKLMFINYPNNPTGA-VADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVG  231 (385)
T ss_pred             HHHHHHhcc---ccceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCE
Confidence            445555443   34566666643555666 5689999999999999999999999998763223211111 11   1122


Q ss_pred             CcEEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        153 PDIITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       153 pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      -.+.+|||.++ .|+++|++++++++++.+..                               .+.++++.+++.+.|++
T Consensus       232 i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  311 (385)
T PRK09276        232 IEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRK  311 (385)
T ss_pred             EEEecchhhcCCcchhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33458999997 68999999999988876643                               11344555666666665


Q ss_pred             c--------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       201 ~--------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .        .|+++++.+ +......+++++|+ ++||++.++..+    .+++|++.+  .+++++.+++++|.+
T Consensus       312 ~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~  384 (385)
T PRK09276        312 LGLEVEPPKATFYVWAPV-PKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT--VPDERIEEAVERIKK  384 (385)
T ss_pred             CCCcccCCCcceEEEEEC-CCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC--CCHHHHHHHHHHHhh
Confidence            3        344456665 33335677888887 579999986422    368999754  578888888888753

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.49  E-value=1.7e-11  Score=115.59  Aligned_cols=191  Identities=14%  Similarity=0.170  Sum_probs=124.3

Q ss_pred             HHHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccc----cc
Q psy11784         77 AQAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQ----TQ  149 (284)
Q Consensus        77 ~~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~----~~  149 (284)
                      .+.+++.++.   .+.++.++++-.-++-.|. .+|++.+++|.++|++|++++|+||+|..+-..+..+-+..    ..
T Consensus       184 ~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~-~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~  262 (447)
T PLN02607        184 PQALEAAYQEAEAANIRVRGVLITNPSNPLGA-TVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEAR  262 (447)
T ss_pred             HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhc
Confidence            5666766652   2335776666322444554 67899999999999999999999999986321221111111    11


Q ss_pred             CC-C-Cc-E---EEeccccc-CCcceeEEEe-cHHHHHhchh--------------------------------hhhHHH
Q psy11784        150 GA-V-PD-I---ITVGKPMG-NGMPIGAVIT-SRKIAESLNC--------------------------------LDDNRP  189 (284)
Q Consensus       150 g~-~-pD-i---v~~sK~l~-~G~p~gav~~-~~~i~~~~~~--------------------------------l~~~~~  189 (284)
                      +. . ++ +   ..+||.++ .|+++|++++ ++++.+.+..                                .+++++
T Consensus       263 ~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~  342 (447)
T PLN02607        263 GYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRK  342 (447)
T ss_pred             CCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            11 1 33 2   36899998 7999999998 6667554432                                112334


Q ss_pred             HHHHHHHHHHhc--------cCceeEEEEecc-----cHHHHHHHHHHHH-CCcEEeecCCC----CCEEEEEcCCCCCH
Q psy11784        190 SGKYLVRPLGIN--------LHIFWCLILLSI-----TYYLYRYTRRMKE-AKIIVANEGEY----GNVLLFLPAMCLTT  251 (284)
Q Consensus       190 ~~~~l~~~L~~~--------~G~~~~i~~~~~-----~~~~~~~~~~l~~-~Gv~~~~~~~~----~~~lr~~p~l~~t~  251 (284)
                      +.+.+.+.|++.        .|+++++++...     .+...++++.+++ .||.+.|+..+    .+++|++... .++
T Consensus       343 ~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~  421 (447)
T PLN02607        343 RYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSE  421 (447)
T ss_pred             HHHHHHHHHHhCCCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCH
Confidence            444555566554        577888887411     1223567777775 69999987543    4799996442 479


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy11784        252 ENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       252 ~~id~~~~~l~~~l~~~~  269 (284)
                      +++++++++|.+++++-.
T Consensus       422 ~~l~~gl~Ri~~~l~~~~  439 (447)
T PLN02607        422 DTLEVALKRIHRFMDRRK  439 (447)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999997644

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.49  E-value=5.1e-12  Score=117.90  Aligned_cols=187  Identities=15%  Similarity=0.172  Sum_probs=126.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEc-ceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccC---C
Q psy11784         77 AQAARNIMEAHRDNIATLICE-PVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQG---A  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~E-pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g---~  151 (284)
                      ++.+++.+.   .++.+|++. | ++-.|. +.+.+.+++|.++|++||++||.||+|..+-..+. .-.+ ...+   .
T Consensus       169 ~~~l~~~~~---~~~k~i~l~nP-~NPTG~-v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~~~~~  242 (410)
T PRK06290        169 LDSIPKDIK---EKAKLLYLNYP-NNPTGA-VATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPGAKEV  242 (410)
T ss_pred             HHHHHHhhc---ccceEEEEECC-CCCCCc-CCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCCcccc
Confidence            455655553   356667666 6 555665 55899999999999999999999999987632222 1111 1111   1


Q ss_pred             CCcEEEeccccc-CCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        152 VPDIITVGKPMG-NGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       152 ~pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      .--+-+|||.++ .|+++|++++++++++.+..                              .++++++.+++.+.|++
T Consensus       243 ~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  322 (410)
T PRK06290        243 GVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNE  322 (410)
T ss_pred             EEEEeechhhcCCchhheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            112347899997 69999999999999887653                              12345556666666665


Q ss_pred             c--------cCceeEEEEeccc------HHHHHHHHHHHHCCc-EEeecCCCCCEEEEEcC-CCCCHHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLSIT------YYLYRYTRRMKEAKI-IVANEGEYGNVLLFLPA-MCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       201 ~--------~G~~~~i~~~~~~------~~~~~~~~~l~~~Gv-~~~~~~~~~~~lr~~p~-l~~t~~~id~~~~~l~~~  264 (284)
                      .        .|+++++.+.+..      ....++++.|+++|+ ++.|+..+++++|++.+ ...++++-+++++.|.+.
T Consensus       323 ~g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~  402 (410)
T PRK06290        323 VGFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRR  402 (410)
T ss_pred             CCCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHH
Confidence            4        3445556653111      246789999998764 55565445678999754 235889999999999999


Q ss_pred             HHHHh
Q psy11784        265 FTSLQ  269 (284)
Q Consensus       265 l~~~~  269 (284)
                      |.++.
T Consensus       403 ~~~~~  407 (410)
T PRK06290        403 LSDVE  407 (410)
T ss_pred             Hhhcc
Confidence            98764

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.49  E-value=6.1e-12  Score=113.85  Aligned_cols=177  Identities=16%  Similarity=0.103  Sum_probs=114.8

Q ss_pred             HHHHHHHHHhc----CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccC--ccccCccccccccC
Q psy11784         77 AQAARNIMEAH----RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGM--GRSGSHFWAFQTQG  150 (284)
Q Consensus        77 ~~~l~~~i~~~----~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~--gr~G~~~~a~~~~g  150 (284)
                      .+++++.+...    ..++++|+++...+.||. . +.+.+++|.++|++||+++|+||+|.-+  +-.|.   ......
T Consensus       110 ~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~-~-~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~---~~~~~~  184 (338)
T cd06502         110 PEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTV-Y-PLDELKAISALAKENGLPLHLDGARLANAAAALGV---ALKTYK  184 (338)
T ss_pred             HHHHHHHhhccCCCcCCcceEEEEEeecCCccc-c-CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC---CHHHHH
Confidence            57777777632    125778888876655443 3 8889999999999999999999987411  11121   111122


Q ss_pred             CCCcEE--EecccccCCcceeE-EEecHHHHHhchh-------------------------------hhhHHHHHHHHHH
Q psy11784        151 AVPDII--TVGKPMGNGMPIGA-VITSRKIAESLNC-------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       151 ~~pDiv--~~sK~l~~G~p~ga-v~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~  196 (284)
                      ..+|++  +++|.++.  |.|+ +++++++++.+..                               .++..++.+++.+
T Consensus       185 ~~~d~~~~s~sK~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~  262 (338)
T cd06502         185 SGVDSVSFCLSKGGGA--PVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAE  262 (338)
T ss_pred             hcCCEEEEeccccCCC--ccceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            345655  67898863  3355 4567877665432                               2355566778888


Q ss_pred             HHHhccCc--------eeEEEEecccHHHHHHHHHHH---HCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        197 PLGINLHI--------FWCLILLSITYYLYRYTRRMK---EAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       197 ~L~~~~G~--------~~~i~~~~~~~~~~~~~~~l~---~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .|+++ |.        ++.+.+.........+.+.+.   ++|+++.+.+  .+.+|++|++.+|++|++++++++++
T Consensus       263 ~L~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         263 ALEEL-GGLESEVQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAWG--EGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             HHHhc-CCCcccccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEecC--CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            88774 22        223332112233344555554   6899998754  38999999999999999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.48  E-value=1.9e-12  Score=117.52  Aligned_cols=166  Identities=14%  Similarity=0.132  Sum_probs=115.8

Q ss_pred             CeeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE---EEeccccc-C
Q psy11784         90 NIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI---ITVGKPMG-N  164 (284)
Q Consensus        90 ~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi---v~~sK~l~-~  164 (284)
                      ++.+|+ ..| ++-.|. ..+.+.+++|.++|++||+++|.||++..|...+. .-.....+-.+.+   -+|||.++ .
T Consensus       122 ~~k~v~l~nP-~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~l~  198 (332)
T PRK06425        122 NFDLIFIVSP-DNPLGN-LISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA-EEDVLLNRSYGNVIIGRSLTKILGIP  198 (332)
T ss_pred             CCCEEEEeCC-CCCcCC-ccCHHHHHHHHHHHHHcCCEEEEecchhccccccc-hhHHHHhccCCCEEEEeecHHhcCCc
Confidence            344444 444 555676 56899999999999999999999999987743221 1111111112333   37899999 8


Q ss_pred             CcceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc--------cCceeEEE
Q psy11784        165 GMPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN--------LHIFWCLI  209 (284)
Q Consensus       165 G~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~--------~G~~~~i~  209 (284)
                      |+++|++++++++++.+..                           .+.++++.+++.+.|++.        .|.++++.
T Consensus       199 GlRiGy~v~~~~li~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~~  278 (332)
T PRK06425        199 SLRIGYIATDDYNMKISRKITEPWSVCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAMGFRAAGDPSANFITFM  278 (332)
T ss_pred             hhhheeeecCHHHHHHHHHcCCCCccCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEEE
Confidence            9999999999999887654                           113444555666666653        34455555


Q ss_pred             EecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        210 LLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       210 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      + +   ...++++.|+++||.+.++..+    .+++|++   ..++++.+.+++.|++++
T Consensus       279 ~-~---~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~al~~~~  331 (332)
T PRK06425        279 I-P---DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIA---IRRRSFNIKLVNALRNFL  331 (332)
T ss_pred             c-C---CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence            4 2   3678899999999999987544    3689996   447899999999998764

>PRK07550 hypothetical protein; Provisional

Probab=99.48  E-value=7.3e-12  Score=115.85  Aligned_cols=181  Identities=18%  Similarity=0.165  Sum_probs=120.0

Q ss_pred             HHHHHHHHHhcCCCeeE-EEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccc-cccccCCC--
Q psy11784         77 AQAARNIMEAHRDNIAT-LICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFW-AFQTQGAV--  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaa-vi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~-a~~~~g~~--  152 (284)
                      .+++++.++   .++.+ +++.| .+..|. .++.+.+++|.++|++||+++|.||++..|...+.... .....+..  
T Consensus       153 ~~~l~~~~~---~~~~~v~~~~P-~NPtG~-~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~  227 (386)
T PRK07550        153 PAAAEALIT---PRTRAIALVTP-NNPTGV-VYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDT  227 (386)
T ss_pred             HHHHHHHhc---ccCcEEEEeCC-CCCCCc-ccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCcccc
Confidence            566777775   24444 44445 444565 45789999999999999999999999987732211000 11111111  


Q ss_pred             -CcEEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHH
Q psy11784        153 -PDIITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       153 -pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~  199 (284)
                       ..+.++||.++ .|+++|++++++++++.+..                               .+.++++.+++.+.|+
T Consensus       228 ~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~  307 (386)
T PRK07550        228 LVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFA  307 (386)
T ss_pred             EEEEecchhhccCcccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22347899998 78999999999988776544                               1134455556666665


Q ss_pred             hc--------cCceeEEEEecc-cHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        200 IN--------LHIFWCLILLSI-TYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       200 ~~--------~G~~~~i~~~~~-~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      ..        .|.+.++.+ +. .....++++.|. ++||.+.|+..+    .+.+|++... .+++++++++++|.++
T Consensus       308 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        308 RLPGWELLASGAYFAYVRH-PFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN-ADVAGIGELVERLRAF  384 (386)
T ss_pred             hCCCceeCCCceEEEEecC-CCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence            42        233445554 22 345678888875 679999986432    4689998753 4799999999999764

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.48  E-value=7.4e-12  Score=116.18  Aligned_cols=179  Identities=11%  Similarity=0.164  Sum_probs=114.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc---cccccc-cCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH---FWAFQT-QGAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~---~~a~~~-~g~~  152 (284)
                      .+++++.+.   +++.+|++-..++-.|. ..+++.+++|.++|++||+++|+||+|..|-..+..   ...... .+..
T Consensus       160 ~~~l~~~~~---~~~k~i~l~~P~NPtG~-~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~  235 (394)
T PRK05942        160 LSSIPEEVA---QQAKILYFNYPSNPTTA-TAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIG  235 (394)
T ss_pred             HHHHHHhcc---ccceEEEEcCCCCCCCC-cCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccE
Confidence            456666554   35666766533666675 568999999999999999999999999866333321   111111 1122


Q ss_pred             CcEEEeccccc-CCcceeEEEecHHHHHhchh--------------------h-----------hhHHHHHHHHHHHHHh
Q psy11784        153 PDIITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L-----------DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       153 pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l-----------~~~~~~~~~l~~~L~~  200 (284)
                      -.+-+|||.++ .|+++|++++++++++.+..                    +           ++++++.+++.+.|++
T Consensus       236 i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  315 (394)
T PRK05942        236 VEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGE  315 (394)
T ss_pred             EEEecchhccCChhhheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23457899996 68999999999999877654                    1           1344555566666654


Q ss_pred             c--------cCceeEEEEecccHHHHHHHHHH-HHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLSITYYLYRYTRRM-KEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       201 ~--------~G~~~~i~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      .        .|+++++.+. ......++...+ .++||.+.++..+    .+++|++.+  .+.+.+.++++++.
T Consensus       316 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~  387 (394)
T PRK05942        316 LGWNIPPTKATMYLWVPCP-VGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDRLK  387 (394)
T ss_pred             CCCeecCCCeeeEEEEECC-CCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHH
Confidence            3        3445666663 222345566654 4789999886432    468999864  34555666665554

>PRK09148 aminotransferase; Validated

Probab=99.48  E-value=2.8e-12  Score=119.44  Aligned_cols=190  Identities=11%  Similarity=0.102  Sum_probs=127.2

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc---
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD---  154 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD---  154 (284)
                      +.+++.++.+..+..++++..-++-.|. .++.+.+++|.++|++||+++|+||+|..|-..+...-......-.++   
T Consensus       153 ~~l~~~~~~~~~~~~~v~l~~P~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i  231 (405)
T PRK09148        153 PALERAVRHSIPKPIALIVNYPSNPTAY-VADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTV  231 (405)
T ss_pred             cCHHHHHhhccccceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEE
Confidence            4455556544345555555433555665 558999999999999999999999999876322221111111111122   


Q ss_pred             -EEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        155 -IITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       155 -iv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                       +-+|||.++ .|+++|++++++++++.+..                               .+.++++.+++.+.|++.
T Consensus       232 ~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~  311 (405)
T PRK09148        232 EFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA  311 (405)
T ss_pred             EEeccccccCCcchheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             347899998 79999999999999876643                               113455556666666553


Q ss_pred             --------cCceeEEEEecc--cHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 --------LHIFWCLILLSI--TYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 --------~G~~~~i~~~~~--~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                              .|+++++.+.+.  .....++++.++ ++||.+.|+..+    .+++|+..+  .+++++++++++|.++++
T Consensus       312 ~~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~  389 (405)
T PRK09148        312 GWDIPPPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLS  389 (405)
T ss_pred             CCccCCCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence                    455666666311  112467888776 689999987432    368999764  689999999999999998


Q ss_pred             HHhh
Q psy11784        267 SLQM  270 (284)
Q Consensus       267 ~~~~  270 (284)
                      +..+
T Consensus       390 ~~~~  393 (405)
T PRK09148        390 SADE  393 (405)
T ss_pred             HHHH
Confidence            7643

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.46  E-value=1.8e-11  Score=113.93  Aligned_cols=186  Identities=14%  Similarity=0.077  Sum_probs=124.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh-CCEEEEecccccCccccCccccccc--cCCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI-GGVVIADEIQCGMGRSGSHFWAFQT--QGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tG~gr~G~~~~a~~~--~g~~p  153 (284)
                      .+.+++.+.   .++.+|++...++..|. .++.+.+++|.++|++| |+++|+||+|..+...+..+.....  .+...
T Consensus       156 ~~~l~~~~~---~~~~~v~l~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~  231 (402)
T PRK06107        156 PEALEAAIT---PRTRWLILNAPSNPTGA-VYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRD  231 (402)
T ss_pred             HHHHHhhcC---cCceEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccC
Confidence            456666554   34555554433555564 66899999999999998 9999999999866333321111111  11222


Q ss_pred             cEE---Eeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHH
Q psy11784        154 DII---TVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       154 Div---~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L  198 (284)
                      .++   ++||.++ .|+++|++++++++.+.+..                               .+.++++.+.+.+.|
T Consensus       232 ~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  311 (402)
T PRK06107        232 RVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALL  311 (402)
T ss_pred             CEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            344   4689998 79999999999999887654                               123555666666777


Q ss_pred             Hhc---------cCceeEEEEe-------ccc---HHHHHHHHHHH-HCCcEEeecCCC--CCEEEEEcCCCCCHHHHHH
Q psy11784        199 GIN---------LHIFWCLILL-------SIT---YYLYRYTRRMK-EAKIIVANEGEY--GNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       199 ~~~---------~G~~~~i~~~-------~~~---~~~~~~~~~l~-~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~  256 (284)
                      ++.         .|+++++.+.       +..   .....+++.+. ++||.+.|+..+  .+++|++..  .+++++++
T Consensus       312 ~~~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~~~e~l~~  389 (402)
T PRK06107        312 NAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--TSLETLEE  389 (402)
T ss_pred             hcCCCCcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHH
Confidence            553         4555666552       111   13456676554 689999988655  368999655  58999999


Q ss_pred             HHHHHHHHHHHH
Q psy11784        257 IVSTLNRIFTSL  268 (284)
Q Consensus       257 ~~~~l~~~l~~~  268 (284)
                      ++++|.++++++
T Consensus       390 ~l~~l~~~l~~~  401 (402)
T PRK06107        390 ACARIERAVAAL  401 (402)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988765

>TIGR01814 kynureninase kynureninase

Probab=99.46  E-value=7.2e-12  Score=116.74  Aligned_cols=173  Identities=16%  Similarity=0.124  Sum_probs=118.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++...+++++|+++.+.+..|.+.+    +++|.++|++||+++++|++|+ +|..   .+..+.+|  +|++
T Consensus       158 ~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~---~id~~~~g--vD~~  227 (406)
T TIGR01814       158 LEDILDTIEKNGDDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV---PLDLHDWG--VDFA  227 (406)
T ss_pred             HHHHHHHHHhcCCCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc---ccccccCC--CCEE
Confidence            46677777644567899999999999999998    9999999999999999999997 4432   12333334  5665


Q ss_pred             E--ecccccCCcceeEEEecHHHHHhc----------------------h----------h-------------------
Q psy11784        157 T--VGKPMGNGMPIGAVITSRKIAESL----------------------N----------C-------------------  183 (284)
Q Consensus       157 ~--~sK~l~~G~p~gav~~~~~i~~~~----------------------~----------~-------------------  183 (284)
                      +  ..|+|.+|.. ++++.+++..+.+                      .          .                   
T Consensus       228 ~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g  306 (406)
T TIGR01814       228 CWCTYKYLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAG  306 (406)
T ss_pred             EEcCccccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcC
Confidence            4  4599977633 4444433221100                      0          0                   


Q ss_pred             ----hhhHHHHHHHHHHHHHhcc-----------------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEE
Q psy11784        184 ----LDDNRPSGKYLVRPLGINL-----------------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLL  242 (284)
Q Consensus       184 ----l~~~~~~~~~l~~~L~~~~-----------------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr  242 (284)
                          .++.+++.+++++.|+++.                 +.++.+.+ +  .....+.+.|.++||++...  .++.+|
T Consensus       307 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~-~--~~~~~~~~~L~~~gi~v~~~--~~~~iR  381 (406)
T TIGR01814       307 MEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTH-P--VPGKAVFQALIKRGVIGDKR--EPSVIR  381 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEe-c--CCHHHHHHHHHHCCEEEecc--CCCeEE
Confidence                1245566667777665421                 12333333 2  24567888999999988642  246899


Q ss_pred             EEc-CCCCCHHHHHHHHHHHHHHH
Q psy11784        243 FLP-AMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       243 ~~p-~l~~t~~~id~~~~~l~~~l  265 (284)
                      ++| ++..|++|||.+++.|++++
T Consensus       382 iS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       382 VAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             EechhccCCHHHHHHHHHHHHHHh
Confidence            999 78999999999999998764

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.46  E-value=2.1e-12  Score=117.55  Aligned_cols=169  Identities=19%  Similarity=0.176  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh--CCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI--GGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      ++.+++.+   .+++++|++....+..|...+    ++++.++|+.+  |+++|+||+|..+...+. ...  .....++
T Consensus       132 ~~~l~~~~---~~~~~~v~l~~p~NptG~~~~----~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~-~~~--~~~~~~~  201 (346)
T TIGR01141       132 LEDILVAI---DDKPKLVFLCSPNNPTGNLLS----RSDIEAVLERTPEDALVVVDEAYGEFSGEPS-TLP--LLAEYPN  201 (346)
T ss_pred             HHHHHHhc---CCCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCCcEEEEECchhhhcCCcc-HHH--HHhhCCC
Confidence            45666544   345777877766777787665    44555555544  999999999997743222 111  1112245


Q ss_pred             EE---Eeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        155 II---TVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       155 iv---~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      ++   ++||.++ .|+++|++++++++.+.+..                            .++++++.+++++.|+++ 
T Consensus       202 ~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~  281 (346)
T TIGR01141       202 LIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAPFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLP  281 (346)
T ss_pred             EEEEehhhHhhhchhhhceeeecCHHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44   6789996 58999999999998877643                            124555566677777653 


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC---CCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY---GNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                             .|.++++++ +.  ...++++.|.++||++.++..+   .+.+|++++   +++|++++++.|
T Consensus       282 g~~~~~~~g~~~~~~~-~~--~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l  345 (346)
T TIGR01141       282 GLEVYPSDANFVLIRF-PR--DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAAL  345 (346)
T ss_pred             CCEECCCcCCEEEEec-CC--CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHh
Confidence                   355666666 32  5678999999999999987544   578999754   899999998876

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.45  E-value=1.6e-11  Score=112.80  Aligned_cols=169  Identities=17%  Similarity=0.140  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++.+|++.-+....|...+    +++|.++|++||+++++|++++ +|...   +  ......+|++
T Consensus       129 ~~~l~~~l~---~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~~---~--~~~~~~~d~~  195 (373)
T cd06453         129 LEALEKLLT---ERTKLVAVTHVSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHMP---V--DVQDLGCDFL  195 (373)
T ss_pred             HHHHHHHhc---CCceEEEEeCcccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCcee---e--eccccCCCEE
Confidence            567777775   36778888777777888776    8999999999999999999986 33221   1  1123457999


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhchh---------------------------------------------------
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESLNC---------------------------------------------------  183 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~~~---------------------------------------------------  183 (284)
                      +++  |.+++ ..+|++++++++.+.+..                                                   
T Consensus       196 ~~s~~K~~~~-~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~  274 (373)
T cd06453         196 AFSGHKMLGP-TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGME  274 (373)
T ss_pred             EeccccccCC-CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHH
Confidence            888  99986 567899898887653220                                                   


Q ss_pred             --hhhHHHHHHHHHHHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC----------CCCE
Q psy11784        184 --LDDNRPSGKYLVRPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----------YGNV  240 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~~~  240 (284)
                        .++.+++.+++.+.|+++           .+.++.+.+ + .....++.+.|.++||.+.++..          ..+.
T Consensus       275 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~  352 (373)
T cd06453         275 AIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNL-E-GIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGT  352 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEE-C-CcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCe
Confidence              123445556666666654           122333443 2 12456888999999999875432          1468


Q ss_pred             EEEEcCCCCCHHHHHHHHHHH
Q psy11784        241 LLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       241 lr~~p~l~~t~~~id~~~~~l  261 (284)
                      +|++++..+|++|+|++++.|
T Consensus       353 iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         353 VRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             EEEEecCCCCHHHHHHHHhhC
Confidence            999999999999999999864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.45  E-value=3e-11  Score=112.39  Aligned_cols=183  Identities=15%  Similarity=0.103  Sum_probs=119.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD--  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD--  154 (284)
                      .+.+++.+.   .+..+|++..-++..|. ..+.+.+++|.++|+++|+++|+||+|..|-..|..+....  ...++  
T Consensus       158 ~~~l~~~~~---~~~~~v~~~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~~  231 (401)
T TIGR01264       158 LKQLESLID---EKTAALIVNNPSNPCGS-VFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLA--SLSSTVP  231 (401)
T ss_pred             HHHHHHHhc---cCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHH--HcCCCCc
Confidence            566666654   23455665433555665 56889999999999999999999999998744442111111  12232  


Q ss_pred             E---EEeccccc-CCcceeEEEecH------HHHHhchh-------------------h------------hhHHHHHHH
Q psy11784        155 I---ITVGKPMG-NGMPIGAVITSR------KIAESLNC-------------------L------------DDNRPSGKY  193 (284)
Q Consensus       155 i---v~~sK~l~-~G~p~gav~~~~------~i~~~~~~-------------------l------------~~~~~~~~~  193 (284)
                      +   -+|||.++ .|+++|++++++      ++++.+..                   +            +.++++.++
T Consensus       232 vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~  311 (401)
T TIGR01264       232 ILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAML  311 (401)
T ss_pred             EEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            3   36899955 689999999863      34332211                   1            134445555


Q ss_pred             HHHHHHhc---------cCceeEEEEec----ccHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHH
Q psy11784        194 LVRPLGIN---------LHIFWCLILLS----ITYYLYRYTRRMK-EAKIIVANEGEY--GNVLLFLPAMCLTTENVLFI  257 (284)
Q Consensus       194 l~~~L~~~---------~G~~~~i~~~~----~~~~~~~~~~~l~-~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~  257 (284)
                      +.+.|+++         .|+++++.+..    ......++++.|+ ++||++.|+..+  .+++|++.  ..++++++++
T Consensus       312 l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~--~~~~~~l~~~  389 (401)
T TIGR01264       312 CYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVL--TVPVVMMEEA  389 (401)
T ss_pred             HHHHHHhCCCCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEE--cCCHHHHHHH
Confidence            66666553         45566666531    1113567888876 789999987543  47899965  4578999999


Q ss_pred             HHHHHHHHHH
Q psy11784        258 VSTLNRIFTS  267 (284)
Q Consensus       258 ~~~l~~~l~~  267 (284)
                      +++|.+++++
T Consensus       390 l~rl~~~~~~  399 (401)
T TIGR01264       390 CSRIQEFCER  399 (401)
T ss_pred             HHHHHHHHhc
Confidence            9999988764

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.44  E-value=3.6e-11  Score=112.26  Aligned_cols=187  Identities=16%  Similarity=0.143  Sum_probs=121.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC-CCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG-AVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g-~~pDi  155 (284)
                      .+++++.+.   .++.+|++..-++-.|. ..+.+-+++|.++|++||+++|.||++..|-..+..+.....+. -.+-+
T Consensus       167 ~~~l~~~~~---~~~~~i~~~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i  242 (412)
T PTZ00433        167 LDEIRRLVD---DRTKALIMTNPSNPCGS-NFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRV  242 (412)
T ss_pred             HHHHHHHhc---cCceEEEEeCCCCCCCc-ccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceE
Confidence            456666554   34555665433555664 55888999999999999999999999987733332111111111 11223


Q ss_pred             E--Eeccccc-CCcceeEEEe------cHHHHHhchh-------------------h------------hhHHHHHHHHH
Q psy11784        156 I--TVGKPMG-NGMPIGAVIT------SRKIAESLNC-------------------L------------DDNRPSGKYLV  195 (284)
Q Consensus       156 v--~~sK~l~-~G~p~gav~~------~~~i~~~~~~-------------------l------------~~~~~~~~~l~  195 (284)
                      +  +|||.++ .|+++|++++      .+++++.+..                   +            ++++++.+.+.
T Consensus       243 ~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~  322 (412)
T PTZ00433        243 ILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLY  322 (412)
T ss_pred             EEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            2  6899995 6899999997      2445544322                   1            13444555566


Q ss_pred             HHHHhc---------cCceeEEEEecc----cHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHH
Q psy11784        196 RPLGIN---------LHIFWCLILLSI----TYYLYRYTRRMK-EAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVS  259 (284)
Q Consensus       196 ~~L~~~---------~G~~~~i~~~~~----~~~~~~~~~~l~-~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~  259 (284)
                      +.|++.         .|+++++.+...    .....++++.|+ ++||.+.++..+  .+.+|++..  ..+++++++++
T Consensus       323 ~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~l~~al~  400 (412)
T PTZ00433        323 NHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTIS--RPVEVLREAVE  400 (412)
T ss_pred             HHHhcCCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEec--CCHHHHHHHHH
Confidence            666542         355666666311    113567888888 579999987544  478999754  46889999999


Q ss_pred             HHHHHHHHHh
Q psy11784        260 TLNRIFTSLQ  269 (284)
Q Consensus       260 ~l~~~l~~~~  269 (284)
                      +|.++++...
T Consensus       401 ~l~~~~~~~~  410 (412)
T PTZ00433        401 RIKAFCERHK  410 (412)
T ss_pred             HHHHHHHHhc
Confidence            9999887543

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.44  E-value=1.9e-11  Score=113.45  Aligned_cols=181  Identities=11%  Similarity=0.023  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC-cccc-cc---ccCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-HFWA-FQ---TQGA  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~~a-~~---~~g~  151 (284)
                      .+.+++.+.   .++.++++-.-++-.|. ..+++.+++|.++|++|++++|.||+|..|-..+. .... ..   ..+.
T Consensus       156 ~~~l~~~~~---~~~k~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  231 (396)
T PRK09147        156 FDAVPAEVW---ARTQLLFVCSPGNPTGA-VLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGR  231 (396)
T ss_pred             HHHHHHHHh---hccEEEEEcCCCCCcCc-cCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCc
Confidence            456665553   24566665433555665 56899999999999999999999999987632221 0111 00   1111


Q ss_pred             --CCcE---EEeccccc-CCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHH
Q psy11784        152 --VPDI---ITVGKPMG-NGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       152 --~pDi---v~~sK~l~-~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~  195 (284)
                        .+.+   -+|||.++ .|+++|++++++++++.+..                              .+.++++.+.+.
T Consensus       232 ~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (396)
T PRK09147        232 DDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVT  311 (396)
T ss_pred             cccccEEEEeccccccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence              1222   37899875 58999999999998876543                              113444445555


Q ss_pred             HHHHhc-------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----------CCEEEEEcCCCCCHHHHHHH
Q psy11784        196 RPLGIN-------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----------GNVLLFLPAMCLTTENVLFI  257 (284)
Q Consensus       196 ~~L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----------~~~lr~~p~l~~t~~~id~~  257 (284)
                      +.|++.       .|+++++++ +  ....++++.|+ ++||.+.|+..+          .+++|+..  ..++++++++
T Consensus       312 ~~L~~~~~~~~p~~g~f~~~~~-~--~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~--~~~~~~l~~~  386 (396)
T PRK09147        312 PILAPVLDVQLPDAGFYLWAKV-P--GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIAL--VAPLAECVEA  386 (396)
T ss_pred             HHHHHhcCCCCCCeeEEEEEEC-C--CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEe--cCCHHHHHHH
Confidence            555442       566777776 3  23467878876 679999887432          36899964  4578999999


Q ss_pred             HHHHHHHHH
Q psy11784        258 VSTLNRIFT  266 (284)
Q Consensus       258 ~~~l~~~l~  266 (284)
                      +++|.++++
T Consensus       387 l~rl~~~~~  395 (396)
T PRK09147        387 AERIVDFCR  395 (396)
T ss_pred             HHHHHHHhc
Confidence            999988763

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.44  E-value=3.8e-11  Score=108.88  Aligned_cols=163  Identities=15%  Similarity=0.085  Sum_probs=113.7

Q ss_pred             eEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc---EEEeccccc-CCcc
Q psy11784         92 ATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD---IITVGKPMG-NGMP  167 (284)
Q Consensus        92 aavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD---iv~~sK~l~-~G~p  167 (284)
                      ..+++.| ++-.|. ..+.+.+++|.++|+++|+++|.||++..+..... ...   ..-.+.   +-+|||.++ .|++
T Consensus       127 ~v~l~nP-~NPTG~-~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s-~~~---~~~~~~vi~~~SfSK~~gl~GlR  200 (330)
T PRK05664        127 VLVVVNP-NNPTGR-RFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHS-LAA---CAHRPGLIVLRSFGKFFGLAGAR  200 (330)
T ss_pred             EEEEeCC-cCCCCC-ccCHHHHHHHHHHHHhcCCEEEEECCcccCCCccc-ccc---cccCCCEEEEeeccccccCCCcc
Confidence            4577788 355666 55888899999999999999999999986632111 111   111233   337999998 8999


Q ss_pred             eeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-----cC--ceeEEEEec
Q psy11784        168 IGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-----LH--IFWCLILLS  212 (284)
Q Consensus       168 ~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-----~G--~~~~i~~~~  212 (284)
                      +|++++++++++.+..                            .+.+.++.+++.+.|++.     .|  +++++.. +
T Consensus       201 iG~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~f~~~~~-~  279 (330)
T PRK05664        201 LGFVLAEPALLRALAELLGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHGLTPAGGCALFQWVRT-E  279 (330)
T ss_pred             eEEEEeCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCcceEEEEec-C
Confidence            9999999998877654                            124555666677777664     22  3334433 2


Q ss_pred             ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        213 ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       213 ~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                         ...++.+.|.++||++...+ ..+.+|++..  .++++.+++++.|++..++
T Consensus       280 ---~~~~~~~~l~~~gi~v~~f~-~~~~iRis~~--~~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        280 ---DAAALHEFLARRGILTRLFE-QPASLRFGLP--ADEADWARLDQALLAYRKE  328 (330)
T ss_pred             ---CHHHHHHHHHHCCeEEEECC-CCCeEEEECC--CCHHHHHHHHHHHHHHHhh
Confidence               45788899999999998643 3578999644  3678888888888766543

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.44  E-value=1.4e-11  Score=116.56  Aligned_cols=188  Identities=13%  Similarity=0.099  Sum_probs=139.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc---CCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ---GAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~---g~~  152 (284)
                      .+.|++.++.+  ++.++.+-|. |.-.|. ..|.+--++|.++|++||+++|-||.+.-|...+...-....+   +-.
T Consensus       215 ~e~le~~~~~~--~~k~~y~~P~~qNPtG~-tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rV  291 (459)
T COG1167         215 PEALEEALAQW--KPKAVYVTPTFQNPTGV-TMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRV  291 (459)
T ss_pred             HHHHHHHHhhc--CCcEEEECCCCCCCCCC-ccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCE
Confidence            67888888733  6889999997 555665 5688999999999999999999999998774443311111111   222


Q ss_pred             CcEEEecccccCCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHH
Q psy11784        153 PDIITVGKPMGNGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       153 pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~  199 (284)
                      --+-+|||.+.-|+++|++++++++++.+..                                 ...++++.+.+.+.|+
T Consensus       292 iy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~  371 (459)
T COG1167         292 IYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALA  371 (459)
T ss_pred             EEEeeehhhcccccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2345899999999999999999998887755                                 1134445555555555


Q ss_pred             hc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEee-cCC------CCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        200 IN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVAN-EGE------YGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       200 ~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~-~~~------~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                      +.           .|+++++++ +...+...+.+.++++|+.+.+ +..      ..+.+|+..+.. +++++++.+.+|
T Consensus       372 ~~~~~~~~~~~p~gG~flwl~l-~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~-~~e~i~~gi~~l  449 (459)
T COG1167         372 EYLPELATWTRPEGGLFLWLEL-PEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSP-SEEEIEEGIKRL  449 (459)
T ss_pred             HhCCCCeeeecCCceEEEEEEc-CCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCC-CHHHHHHHHHHH
Confidence            54           478889988 4555688999999999999998 322      245899987655 699999999999


Q ss_pred             HHHHHHHh
Q psy11784        262 NRIFTSLQ  269 (284)
Q Consensus       262 ~~~l~~~~  269 (284)
                      .+++.+..
T Consensus       450 ~~~~~~~~  457 (459)
T COG1167         450 AALLREAA  457 (459)
T ss_pred             HHHHHHHh
Confidence            99988753

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.44  E-value=3.4e-11  Score=111.76  Aligned_cols=182  Identities=12%  Similarity=0.081  Sum_probs=123.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHH------hCCEEEEecccccCccccCccccccccC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE------IGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ++++++.++   +++.+|++...++..|. ..|.+.+++|.++|++      ||+++|.||++..|-..|......  ..
T Consensus       158 ~~~l~~~~~---~~~~~v~~~~p~NPtG~-~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~--~~  231 (394)
T PRK06836        158 LDALEAAIT---PKTKAVIINSPNNPTGV-VYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYI--FK  231 (394)
T ss_pred             HHHHHhhcC---cCceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCCh--HH
Confidence            567777664   34666776554555665 5588899999999999      899999999998773333211110  11


Q ss_pred             CCCcEE---Eeccccc-CCcceeEEEecHHHHHh------ch---------h------------------hhhHHHHHHH
Q psy11784        151 AVPDII---TVGKPMG-NGMPIGAVITSRKIAES------LN---------C------------------LDDNRPSGKY  193 (284)
Q Consensus       151 ~~pDiv---~~sK~l~-~G~p~gav~~~~~i~~~------~~---------~------------------l~~~~~~~~~  193 (284)
                      ..+.++   ++||.++ .|+++|++++++++.+.      +.         .                  ...++++.+.
T Consensus       232 ~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~r~~  311 (394)
T PRK06836        232 YYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATVDVSIYKRNRDL  311 (394)
T ss_pred             ccCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            112332   5899998 79999999998765321      10         0                  1134556666


Q ss_pred             HHHHHHhc--------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        194 LVRPLGIN--------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       194 l~~~L~~~--------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      +.+.|++.        .|+++++.+ +. ....++++.|.++||.+.++..+  .+.+||...  .+++++++++++|.+
T Consensus       312 l~~~L~~~g~~~~~~~gg~~~~~~~-~~-~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~l~~  387 (394)
T PRK06836        312 LYDGLTELGFECVKPQGAFYLFPKS-PE-EDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPAFEK  387 (394)
T ss_pred             HHHHHHhCCCEeecCCceEEEEEeC-CC-CCHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            76777653        244555554 33 24567888899999999987533  468999765  689999999999999


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      ++++.
T Consensus       388 ~l~~~  392 (394)
T PRK06836        388 LAKEY  392 (394)
T ss_pred             HHHHh
Confidence            98764

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.44  E-value=3.7e-11  Score=110.14  Aligned_cols=176  Identities=13%  Similarity=0.143  Sum_probs=119.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+..+. ++..|.+--+.+..|.+.+    +++|.++|++||+++|+|.+|+ +|...   +....  ..+|++
T Consensus       117 ~~~l~~~l~~~~-~~~~v~~~~~~~~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g~~~---~~~~~--~~~D~~  185 (363)
T TIGR02326       117 VVEVEAILAADP-AITHIALVHCETTTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FGGIP---IDIAE--LHIDYL  185 (363)
T ss_pred             HHHHHHHHhhCC-CccEEEEEeecCCccccCc----HHHHHHHHHHcCCEEEEEcccc-ccCcc---cchhh--cCccEE
Confidence            677888876432 3334444444566788877    8999999999999999999886 54322   22222  346776


Q ss_pred             E--ecccccCCcceeEEEecHHHHHhch---------------------------h------------------------
Q psy11784        157 T--VGKPMGNGMPIGAVITSRKIAESLN---------------------------C------------------------  183 (284)
Q Consensus       157 ~--~sK~l~~G~p~gav~~~~~i~~~~~---------------------------~------------------------  183 (284)
                      +  ++|+++++..+|+++++++..+.+.                           .                        
T Consensus       186 ~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~  265 (363)
T TIGR02326       186 ISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAAR  265 (363)
T ss_pred             EecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHH
Confidence            4  5699986556799999887765320                           0                        


Q ss_pred             hhhHHHHHHHHHHHHHhccCc------------eeEEEEeccc--HHHHHHHHHHHHCCcEEeecCCC-CCEEEEEcCCC
Q psy11784        184 LDDNRPSGKYLVRPLGINLHI------------FWCLILLSIT--YYLYRYTRRMKEAKIIVANEGEY-GNVLLFLPAMC  248 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~~G~------------~~~i~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~-~~~lr~~p~l~  248 (284)
                      .++.+++.+++++.|+++ |+            +..+.+ +..  .....+.+.|.++||.+.++... .+.+|+.+...
T Consensus       266 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~  343 (363)
T TIGR02326       266 HQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYS-PEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGE  343 (363)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEEC-CCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCC
Confidence            124555666677777664 32            122333 221  24567889999999999876432 47899987667


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy11784        249 LTTENVLFIVSTLNRIF  265 (284)
Q Consensus       249 ~t~~~id~~~~~l~~~l  265 (284)
                      ++.++++.+++.|++++
T Consensus       344 ~~~edv~~~l~~l~~~l  360 (363)
T TIGR02326       344 VDAADITRLLTAIGKAM  360 (363)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            89999999999998875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.43  E-value=8.7e-11  Score=112.07  Aligned_cols=190  Identities=13%  Similarity=0.117  Sum_probs=124.7

Q ss_pred             HHHHHHHHH---hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccc-c---c
Q psy11784         77 AQAARNIME---AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQ-T---Q  149 (284)
Q Consensus        77 ~~~l~~~i~---~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~-~---~  149 (284)
                      .+.+++.++   +...++.+|++-.-+.-.|. ..+++.+++|.++|++||+++|.||+|..+-..+..+-+.. .   +
T Consensus       183 ~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~-~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~  261 (496)
T PLN02376        183 VDAADWAYKKAQESNKKVKGLILTNPSNPLGT-MLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDV  261 (496)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccc
Confidence            455554433   12345776665433555665 56899999999999999999999999987633342121111 1   1


Q ss_pred             C---CCCcE----EEeccccc-CCcceeEEEec-HHHHHhchh--------------------------------hhhHH
Q psy11784        150 G---AVPDI----ITVGKPMG-NGMPIGAVITS-RKIAESLNC--------------------------------LDDNR  188 (284)
Q Consensus       150 g---~~pDi----v~~sK~l~-~G~p~gav~~~-~~i~~~~~~--------------------------------l~~~~  188 (284)
                      +   ..|+.    .+|||.++ .|+++|++++. +.+.+.+..                                .++++
T Consensus       262 ~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~  341 (496)
T PLN02376        262 DISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLG  341 (496)
T ss_pred             cccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Confidence            1   12442    37899997 79999999994 555554322                                11334


Q ss_pred             HHHHHHHHHHHhc--------cCceeEEEEecc----c--HHHHHHHHHHHH-CCcEEeecCCC----CCEEEEEcCCCC
Q psy11784        189 PSGKYLVRPLGIN--------LHIFWCLILLSI----T--YYLYRYTRRMKE-AKIIVANEGEY----GNVLLFLPAMCL  249 (284)
Q Consensus       189 ~~~~~l~~~L~~~--------~G~~~~i~~~~~----~--~~~~~~~~~l~~-~Gv~~~~~~~~----~~~lr~~p~l~~  249 (284)
                      ++.+.+.+.|++.        .|+++++++.+.    .  +...++++.+.+ .||.+.|+..+    .+++|++... .
T Consensus       342 ~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~  420 (496)
T PLN02376        342 IRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN-M  420 (496)
T ss_pred             HHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-C
Confidence            4555566666643        568888888411    0  123568888886 59999997544    3689996542 5


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy11784        250 TTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       250 t~~~id~~~~~l~~~l~~~  268 (284)
                      +++++++++++|.+++.+-
T Consensus       421 ~~~~l~~al~rl~~~l~~~  439 (496)
T PLN02376        421 DDDTLHVALGRIQDFVSKN  439 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            7899999999999998653

>PRK08363 alanine aminotransferase; Validated

Probab=99.43  E-value=3.5e-11  Score=111.83  Aligned_cols=184  Identities=11%  Similarity=0.042  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI-  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi-  155 (284)
                      .+.+++.+.   +++.+|++...++..|. ..+.+.+++|.++|++||+++|.||+|..+-..+. ........-...+ 
T Consensus       156 ~~~l~~~~~---~~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~~~~~~vi  230 (398)
T PRK08363        156 IDDIRKKIT---EKTKAIAVINPNNPTGA-LYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLTKDVPVI  230 (398)
T ss_pred             HHHHHhhCC---cceEEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHcCcCCcEE
Confidence            455666553   34555555433555665 44788999999999999999999999986532332 1111111111223 


Q ss_pred             --EEeccccc-CCcceeEEEe--cHHHHHhchh----------------------------------hhhHHHHHHHHHH
Q psy11784        156 --ITVGKPMG-NGMPIGAVIT--SRKIAESLNC----------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       156 --v~~sK~l~-~G~p~gav~~--~~~i~~~~~~----------------------------------l~~~~~~~~~l~~  196 (284)
                        -+|||.++ .|+++|++++  ++++++.+..                                  .++++++.+++.+
T Consensus       231 ~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~  310 (398)
T PRK08363        231 VMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYK  310 (398)
T ss_pred             EEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence              37899964 6899999997  5543332110                                  1245555566666


Q ss_pred             HHHhc---------cCceeEEEEecc-cHHHHHHH-HHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        197 PLGIN---------LHIFWCLILLSI-TYYLYRYT-RRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       197 ~L~~~---------~G~~~~i~~~~~-~~~~~~~~-~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                      .|+++         .|+++++.+.+. .....+++ +.|.++||.+.++..+    .+++|++.  ..+++++++++++|
T Consensus       311 ~L~~~~~~~~~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~--~~~~~~l~~~l~~l  388 (398)
T PRK08363        311 RLNEIPGISTTKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVF--LPPVEILEEAMDRF  388 (398)
T ss_pred             HHhcCCCCEecCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHH
Confidence            66553         233344444211 11234454 4567899999987543    36899974  56889999999999


Q ss_pred             HHHHHH
Q psy11784        262 NRIFTS  267 (284)
Q Consensus       262 ~~~l~~  267 (284)
                      .+++++
T Consensus       389 ~~~~~~  394 (398)
T PRK08363        389 EEFMRE  394 (398)
T ss_pred             HHHHHH
Confidence            988765

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.43  E-value=1.2e-11  Score=113.34  Aligned_cols=169  Identities=11%  Similarity=0.070  Sum_probs=115.5

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE--EEeccccc-CC
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI--ITVGKPMG-NG  165 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi--v~~sK~l~-~G  165 (284)
                      +++.+|++...++-.|. ..+.+.+++|.++|++||+++|+||+|..|-..+...... .......+  .++||.++ .|
T Consensus       141 ~~~k~v~l~~p~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G  218 (356)
T PRK08056        141 PDLDCLFLCTPNNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ-LADNPHLWVLRSLTKFYAIPG  218 (356)
T ss_pred             CCCCEEEEeCCcCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH-hccCCCEEEEEechhhccCcc
Confidence            45666666544666777 6689999999999999999999999998874333201111 11111223  36899999 79


Q ss_pred             cceeEEEec-HHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc--------cCceeEE
Q psy11784        166 MPIGAVITS-RKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN--------LHIFWCL  208 (284)
Q Consensus       166 ~p~gav~~~-~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~--------~G~~~~i  208 (284)
                      +++|+++++ +++++.+..                            .+.++++.+++.+.|+++        .|.++++
T Consensus       219 ~RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~  298 (356)
T PRK08056        219 LRLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLTVWPGRANYLFL  298 (356)
T ss_pred             hhheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCCCcEEEE
Confidence            999999984 566555533                            123455666677777654        3445555


Q ss_pred             EEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        209 ILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       209 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      .+. .  ...++++.|+++||.+.++..+    .+++|++.   .++++.+.+++.|++++
T Consensus       299 ~~~-~--~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~---~~~~~~~~l~~~l~~~~  353 (356)
T PRK08056        299 RCE-R--PDIDLQRALLTQRILIRSCANYPGLDSRYYRVAI---RSAAENERLLAALRNVL  353 (356)
T ss_pred             EcC-C--ChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEE---cCHHHHHHHHHHHHHHH
Confidence            552 1  2467899999999999987543    36899973   37889999998888764

>PRK07337 aminotransferase; Validated

Probab=99.43  E-value=3.9e-11  Score=111.09  Aligned_cols=180  Identities=14%  Similarity=0.164  Sum_probs=121.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++.+|++...+...|. ..+.+.+++|.++|++||+++|+||++.+|...+. ....  ....++++
T Consensus       153 ~~~l~~~~~---~~~~~v~l~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~--~~~~~~vi  225 (388)
T PRK07337        153 AADVEAAWG---ERTRGVLLASPSNPTGT-SIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSA--LSLGDDVI  225 (388)
T ss_pred             HHHHHhhcC---ccceEEEEECCCCCCCc-CcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcCh--hhccCCEE
Confidence            456666554   34555555333455664 56889999999999999999999999987754332 1111  12234554


Q ss_pred             ---Eeccccc-CCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        157 ---TVGKPMG-NGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       157 ---~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                         ++||.++ .|+++|++++++++++.+..                                .+.++++.+++.+.|++
T Consensus       226 ~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~  305 (388)
T PRK07337        226 TINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALES  305 (388)
T ss_pred             EEEechhhcCCchhheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence               6799997 68999999999988776643                                11344555566666655


Q ss_pred             c---------cCceeEEEEec----ccHHHHHHHHHHH-HCCcEEeecCCC-----CCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLS----ITYYLYRYTRRMK-EAKIIVANEGEY-----GNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       201 ~---------~G~~~~i~~~~----~~~~~~~~~~~l~-~~Gv~~~~~~~~-----~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                      .         .|+++++++..    ......++++.++ ++||.+.|+..+     .+++|++..  .+++++.+++++|
T Consensus       306 ~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~--~~~~~l~~~l~rl  383 (388)
T PRK07337        306 LGFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA--TSMSRLEEAVARL  383 (388)
T ss_pred             cCCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec--CCHHHHHHHHHHH
Confidence            3         35566776631    1124567777754 789999886433     368999755  4789999999999


Q ss_pred             HHHH
Q psy11784        262 NRIF  265 (284)
Q Consensus       262 ~~~l  265 (284)
                      .+++
T Consensus       384 ~~~l  387 (388)
T PRK07337        384 GKLF  387 (388)
T ss_pred             HHHh
Confidence            8764

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.42  E-value=3.1e-11  Score=112.47  Aligned_cols=177  Identities=16%  Similarity=0.167  Sum_probs=111.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC--ccccccc-cCCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS--HFWAFQT-QGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~--~~~a~~~-~g~~p  153 (284)
                      .+.+++.+++..++..++++-.-++-.|. ..+++.+++|.++|++||+++|.||+|..|-..+.  ....... ....+
T Consensus       163 ~~~l~~~~~~~~~~~~~~~~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~  241 (404)
T PTZ00376        163 FDGMLEDLRTAPNGSVVLLHACAHNPTGV-DPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGV  241 (404)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCC
Confidence            56777777643333445555555666676 55999999999999999999999999988743220  0001111 11112


Q ss_pred             cE---EEeccccc-CCcceeEE---EecHHHHH----hchh--------------------hh-----------------
Q psy11784        154 DI---ITVGKPMG-NGMPIGAV---ITSRKIAE----SLNC--------------------LD-----------------  185 (284)
Q Consensus       154 Di---v~~sK~l~-~G~p~gav---~~~~~i~~----~~~~--------------------l~-----------------  185 (284)
                      .+   .+|||.++ .|+++|++   ++++++.+    .+..                    ++                 
T Consensus       242 ~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  321 (404)
T PTZ00376        242 EFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSG  321 (404)
T ss_pred             cEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            33   37899999 79999998   46765433    2211                    11                 


Q ss_pred             hHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecCCCCCEEEEEcCCCCCHH
Q psy11784        186 DNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGEYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~~~lr~~p~l~~t~~  252 (284)
                      +++++.+.+.+.|++.            .|++.++.+      ..++++.|.++ ||++.|+    +  |++.+. ++++
T Consensus       322 ~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~------~~~~~~~L~~~~~v~v~p~----~--Ris~~~-~~~~  388 (404)
T PTZ00376        322 RIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGL------TKEQVERLIEKYHIYLLDN----G--RISVAG-LTSK  388 (404)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCC------CHHHHHHHHHhCCEeecCC----C--eEEEec-cCHH
Confidence            2234445555555542            112222222      24688888876 9999874    2  776432 7999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11784        253 NVLFIVSTLNRIFTS  267 (284)
Q Consensus       253 ~id~~~~~l~~~l~~  267 (284)
                      +++.++++|++++..
T Consensus       389 ~~~~~~~~l~~~~~~  403 (404)
T PTZ00376        389 NVDYVAEAIHDVVRN  403 (404)
T ss_pred             hHHHHHHHHHHHHhc
Confidence            999999999988653

>PRK06855 aminotransferase; Validated

Probab=99.42  E-value=6.8e-11  Score=111.14  Aligned_cols=187  Identities=16%  Similarity=0.110  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD--  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD--  154 (284)
                      .++|++.+......-+.++..| ++-.|. ..+++.+++|.++|++||+++|.||+|..+-..+...-...  .+.+|  
T Consensus       159 ~~~l~~~~~~~~~~~~i~l~~P-~NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~--~~~~~~~  234 (433)
T PRK06855        159 LDDLENKVKYNPSIAGILLINP-DNPTGA-VYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLS--EVIGDVP  234 (433)
T ss_pred             HHHHHHHHhcCCCceEEEEECC-CCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHH--HHcCcCC
Confidence            5778877753222234456667 555665 67999999999999999999999999998743342111111  11122  


Q ss_pred             ---EEEeccccc-CCcceeEEEec-----H---HHHHhchh--------------------------------hhhHHHH
Q psy11784        155 ---IITVGKPMG-NGMPIGAVITS-----R---KIAESLNC--------------------------------LDDNRPS  190 (284)
Q Consensus       155 ---iv~~sK~l~-~G~p~gav~~~-----~---~i~~~~~~--------------------------------l~~~~~~  190 (284)
                         +-+|||.++ .|+++|+++++     +   ++++.+..                                .+.++++
T Consensus       235 ~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r  314 (433)
T PRK06855        235 GIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKR  314 (433)
T ss_pred             eEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence               236899997 79999999972     2   22222110                                1134455


Q ss_pred             HHHHHHHHHhc---------cCceeEEEEeccc--------------------------HHHHHHHHH-HHHCCcEEeec
Q psy11784        191 GKYLVRPLGIN---------LHIFWCLILLSIT--------------------------YYLYRYTRR-MKEAKIIVANE  234 (284)
Q Consensus       191 ~~~l~~~L~~~---------~G~~~~i~~~~~~--------------------------~~~~~~~~~-l~~~Gv~~~~~  234 (284)
                      .+.+.+.|++.         .|+++++.+.+..                          ....+++.. +.++||.+.|+
T Consensus       315 ~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG  394 (433)
T PRK06855        315 SNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPL  394 (433)
T ss_pred             HHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecC
Confidence            55666666543         3456676663110                          013455544 55789999998


Q ss_pred             CCCC---CEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        235 GEYG---NVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       235 ~~~~---~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      ..++   +.+|++... .++++|++++++|.+++++.
T Consensus       395 ~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~~  430 (433)
T PRK06855        395 SSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIEEY  430 (433)
T ss_pred             CcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHHHH
Confidence            5543   468997644 48999999999999998753

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=4.1e-11  Score=111.23  Aligned_cols=175  Identities=18%  Similarity=0.173  Sum_probs=131.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.++.++.   +++..|.+.-+.+..|.+.|    +++|.++|+++|+++++|=+|+ .   |.  .-.+...+..|++
T Consensus       152 ~~~~~~~i~---~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~---~h--~~idv~~l~~Df~  218 (405)
T COG0520         152 LDALEKLIT---PKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-A---GH--LPIDVQELGCDFL  218 (405)
T ss_pred             HHHHHHhcC---CCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-c---Cc--cCCCchhcCCCEE
Confidence            456666443   66889999999999999999    9999999999999999999986 3   21  2333344568999


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhchh---------------------------------------------------
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESLNC---------------------------------------------------  183 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~~~---------------------------------------------------  183 (284)
                      +||  |++.|-..+|.+.+++++.+.+.+                                                   
T Consensus       219 afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~  298 (405)
T COG0520         219 AFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGM  298 (405)
T ss_pred             EEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhH
Confidence            887  988876679999999999988743                                                   


Q ss_pred             ---hhhHHHHHHHHHHHHHhc-----c-------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCC----------CC
Q psy11784        184 ---LDDNRPSGKYLVRPLGIN-----L-------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----------YG  238 (284)
Q Consensus       184 ---l~~~~~~~~~l~~~L~~~-----~-------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~  238 (284)
                         .++.+++.+++.+.|+++     .       +.++.+.+.  ......++..|.++||.++.+..          ..
T Consensus       299 ~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~--~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~  376 (405)
T COG0520         299 EAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVK--GIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVD  376 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeC--CCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCC
Confidence               125556667777777766     1       223333332  23467899999999988876421          12


Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        239 NVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       239 ~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ..+|+++.+..|++|||++++.|+++.+
T Consensus       377 ~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         377 ATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             CceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence            3499999999999999999999988764

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.42  E-value=1.6e-11  Score=111.71  Aligned_cols=165  Identities=16%  Similarity=0.121  Sum_probs=119.6

Q ss_pred             eEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE---EEeccccc-CCcc
Q psy11784         92 ATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI---ITVGKPMG-NGMP  167 (284)
Q Consensus        92 aavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi---v~~sK~l~-~G~p  167 (284)
                      ..++..| .+-.|. ..+.+.++++.+.|++++.++|+||+|..|... ......  .+ .+++   -+|||.++ .|++
T Consensus       133 ~v~l~nP-nNPTG~-~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-~s~~~~--~~-~~~vi~l~SfSK~~gl~GlR  206 (339)
T PRK06959        133 HLIVVNP-NNPTAE-RLPAARLLRWHAQLAARGGTLIVDEAFADTLPA-ASLAAH--TD-RPGLVVLRSVGKFFGLAGVR  206 (339)
T ss_pred             EEEEeCC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-ccchhc--cC-CCCEEEEecChhhcCCcchh
Confidence            4577788 455675 457888999999999999999999999877321 111111  11 2333   37899998 8999


Q ss_pred             eeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc------cCceeEEEEecc
Q psy11784        168 IGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN------LHIFWCLILLSI  213 (284)
Q Consensus       168 ~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~------~G~~~~i~~~~~  213 (284)
                      +|++++++++++.+..                            .+.+++..+++.+.|+++      .++++++.+ + 
T Consensus       207 iGy~v~~~~li~~l~~~~~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~f~~~~~-~-  284 (339)
T PRK06959        207 AGFVLAAPALLAALRDALGAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAHGFAVHATPLFSWTDD-P-  284 (339)
T ss_pred             eEEEecCHHHHHHHHHhcCCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCCccCcceEEEEeC-C-
Confidence            9999999999887755                            235666677788888774      233444443 2 


Q ss_pred             cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        214 TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       214 ~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                        .+.++.+.|.++||+++..+ ..+++|++  +..+++|.+.+++.|+++++.+.
T Consensus       285 --~~~~l~~~l~~~GI~vr~~~-~~~~lRis--i~~~~~e~~~l~~al~~~~~~~~  335 (339)
T PRK06959        285 --RAAALHAALARRGIWTRYFA-PPPSVRFG--LPADEAEWQRLEDALAECVPTLA  335 (339)
T ss_pred             --CHHHHHHHHHhCCeEEEECC-CCCeEEEE--CCCCHHHHHHHHHHHHHHHHHHh
Confidence              35678999999999998653 24689996  44578999999999998887764

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.42  E-value=1.4e-11  Score=111.87  Aligned_cols=182  Identities=17%  Similarity=0.097  Sum_probs=112.0

Q ss_pred             HHHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .++|++.+..   .+..+.+|++.-.....|...+    +++|.++|++||+++++|++|.++..... .......++ .
T Consensus       132 ~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~~~~~~~  206 (345)
T cd06450         132 PEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFP-EPRHLDFGIER  206 (345)
T ss_pred             HHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhCh-hhHHHhcCccc
Confidence            5777777763   1223455554433445676655    99999999999999999999975421111 000001111 3


Q ss_pred             CcEE--EecccccCCcceeEEEecH----HHHHhchh------hhhHHHHHHHHHHHHHhccCc---------eeEEEEe
Q psy11784        153 PDII--TVGKPMGNGMPIGAVITSR----KIAESLNC------LDDNRPSGKYLVRPLGINLHI---------FWCLILL  211 (284)
Q Consensus       153 pDiv--~~sK~l~~G~p~gav~~~~----~i~~~~~~------l~~~~~~~~~l~~~L~~~~G~---------~~~i~~~  211 (284)
                      .|.+  +++|.+++++..|+++.+.    ..++.+..      +++..++.+++.+.|+++.|.         ++.+.+.
T Consensus       207 ~d~~~~s~~K~l~~p~g~g~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~  286 (345)
T cd06450         207 VDSISVDPHKYGLVPLGCSAVLVRALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLK  286 (345)
T ss_pred             cCEEEEchhHhhCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEEC
Confidence            5654  5679887766777765551    00111111      456777888888888775222         2333332


Q ss_pred             cc---cHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCC-CHHHHHHHHHHHHH
Q psy11784        212 SI---TYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCL-TTENVLFIVSTLNR  263 (284)
Q Consensus       212 ~~---~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~-t~~~id~~~~~l~~  263 (284)
                      +.   .....++.+.|.++|+++.+...  ....+|+++...+ |++|+|++++.|++
T Consensus       287 ~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         287 PSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             CcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            21   23566899999999665543221  3568999998765 99999999999865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.42  E-value=8e-11  Score=110.59  Aligned_cols=188  Identities=16%  Similarity=0.162  Sum_probs=118.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +++++++++  ....+.+++.| .+..|. +.+.+.+++|.++|++||+++|+||+|..|-..+..+.....++-...++
T Consensus       180 ~~~l~~~~~--~~~~~i~i~~P-~NPtG~-v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi  255 (430)
T PLN00145        180 LEGVEALAD--ENTVAMVIINP-NNPCGS-VYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVL  255 (430)
T ss_pred             HHHHHHHhC--cCceEEEEeCC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEE
Confidence            567777664  22355666777 455665 66899999999999999999999999987633232111111111122233


Q ss_pred             ---Eeccccc-CCcceeEEEec--HHHHH------hchh-------------------------------hhhHHHHHHH
Q psy11784        157 ---TVGKPMG-NGMPIGAVITS--RKIAE------SLNC-------------------------------LDDNRPSGKY  193 (284)
Q Consensus       157 ---~~sK~l~-~G~p~gav~~~--~~i~~------~~~~-------------------------------l~~~~~~~~~  193 (284)
                         +|||..+ .|+++|++++.  +.+++      .+..                               .+.++++.+.
T Consensus       256 ~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~  335 (430)
T PLN00145        256 TLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADI  335 (430)
T ss_pred             EEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence               6899954 69999999973  32221      1110                               1234445555


Q ss_pred             HHHHHHhc----------cCceeEEEEec----ccHHHHHHHHHHH-HCCcEEeecCCCC--CEEEEEcCCCCCHHHHHH
Q psy11784        194 LVRPLGIN----------LHIFWCLILLS----ITYYLYRYTRRMK-EAKIIVANEGEYG--NVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       194 l~~~L~~~----------~G~~~~i~~~~----~~~~~~~~~~~l~-~~Gv~~~~~~~~~--~~lr~~p~l~~t~~~id~  256 (284)
                      +.+.|+++          .|+++++.+..    .......++..++ ++||++.|+..++  +++||+..  .+++++++
T Consensus       336 ~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~--~~~~~l~~  413 (430)
T PLN00145        336 CYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFA--IDPPSLED  413 (430)
T ss_pred             HHHHHhcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHH
Confidence            66666553          23444555521    1113456776555 6799999875443  79999754  58999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy11784        257 IVSTLNRIFTSLQM  270 (284)
Q Consensus       257 ~~~~l~~~l~~~~~  270 (284)
                      ++++|.+++.+..+
T Consensus       414 al~rl~~~~~~~~~  427 (430)
T PLN00145        414 GLERLKSFCLRHAK  427 (430)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999977543

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.42  E-value=4.8e-11  Score=111.58  Aligned_cols=178  Identities=12%  Similarity=0.074  Sum_probs=113.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEE-cceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++++.++..  ...+|++ +++.|+.+   +    +++|.++|++||++||+|++|+ +|-.+. +......+ ..|+
T Consensus       157 ~~~le~~l~~~--~~klVi~~~~~~g~~~---d----l~~l~~la~~~g~~livD~Aha-~G~~~~-g~~~~~~~-~~Di  224 (416)
T PRK13034        157 YDEVEELAKEH--KPKLIIAGFSAYPREL---D----FARFREIADEVGALLMVDMAHI-AGLVAA-GEHPNPFP-HAHV  224 (416)
T ss_pred             HHHHHHHHhhc--CCeEEEECCCcccccc---C----HHHHHHHHHHcCCEEEEeCccc-ccCccc-CCCCCCCC-CceE
Confidence            56777777532  3467777 57665433   3    8899999999999999999996 444443 11111111 3676


Q ss_pred             E--EecccccCCcceeEEEecHH-HHHhchh---------------------------------hhhHHHHHHHHHHHHH
Q psy11784        156 I--TVGKPMGNGMPIGAVITSRK-IAESLNC---------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       156 v--~~sK~l~~G~p~gav~~~~~-i~~~~~~---------------------------------l~~~~~~~~~l~~~L~  199 (284)
                      +  +++|+++|+. .|+++++++ +.+.+..                                 .+++.++.++|++.|+
T Consensus       225 ~~~s~~K~l~g~~-GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~  303 (416)
T PRK13034        225 VTTTTHKTLRGPR-GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLK  303 (416)
T ss_pred             EEEeCcccCCCCC-CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence            6  5679996532 366666543 3332221                                 1355566778888887


Q ss_pred             hccCce----------eEEEEecccHHHHHHHHHHHHCCcEEeecC-------C-CCCEEEEEcCC----CCCHHHHHHH
Q psy11784        200 INLHIF----------WCLILLSITYYLYRYTRRMKEAKIIVANEG-------E-YGNVLLFLPAM----CLTTENVLFI  257 (284)
Q Consensus       200 ~~~G~~----------~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~-~~~~lr~~p~l----~~t~~~id~~  257 (284)
                      ++ |+-          ..+.+.........+.+.|.++||++.+.+       + ....||+.++.    .++++|++++
T Consensus       304 ~~-G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l  382 (416)
T PRK13034        304 ER-GYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREI  382 (416)
T ss_pred             Hc-CCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHH
Confidence            64 432          222221112234556688888999997421       1 23579999888    7889999999


Q ss_pred             HHHHHHHHHHH
Q psy11784        258 VSTLNRIFTSL  268 (284)
Q Consensus       258 ~~~l~~~l~~~  268 (284)
                      ++.|.+++...
T Consensus       383 ~~~l~~~~~~~  393 (416)
T PRK13034        383 ANWILDVLDDL  393 (416)
T ss_pred             HHHHHHHHhcC
Confidence            99999998743

>PRK03321 putative aminotransferase; Provisional

Probab=99.41  E-value=4.1e-12  Score=116.04  Aligned_cols=175  Identities=15%  Similarity=0.108  Sum_probs=118.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHH--hCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE--IGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      ++.+++.++   +++.+|++...++..|.+.+    .+++.++|++  +|+++|+||+|..|...+............++
T Consensus       135 ~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  207 (352)
T PRK03321        135 LDAMAAAIT---DRTRLIFVCNPNNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPN  207 (352)
T ss_pred             HHHHHHhhc---cCCCEEEEeCCCCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCC
Confidence            566666664   34566666655777787765    4556666655  69999999999877443321111222222355


Q ss_pred             EE---Eeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        155 II---TVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       155 iv---~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      ++   +|||.++ .|+++|++++++++++.+..                            ++++.+..+++.+.|++. 
T Consensus       208 vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~~  287 (352)
T PRK03321        208 VVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVAVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAAG  287 (352)
T ss_pred             EEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            55   6899998 69999999999999887654                            113333445566666553 


Q ss_pred             ------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 ------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                            .|.++++.+.   .....+++.|.++||++.+.  ..+.||+..   .++++.++++++|++++.
T Consensus       288 ~~~~~~~g~~i~i~l~---~~~~~~~~~l~~~gI~v~~~--~~~~iRi~~---~~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        288 WTVPPSQANFVWLPLG---ERTADFAAAAAEAGVVVRPF--AGEGVRVTI---GAPEENDAFLRAARAWRA  350 (352)
T ss_pred             CccCCCCCCEEEEeCC---CCHHHHHHHHHHCCEEEEcc--CCCcEEEee---CCHHHHHHHHHHHHHHhc
Confidence                  4566666652   23678999999999999873  245799973   589999999999988754

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.41  E-value=7.9e-11  Score=109.89  Aligned_cols=186  Identities=18%  Similarity=0.119  Sum_probs=116.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI-  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi-  155 (284)
                      .+++++.++  ....+.+++.| ++-.|. ..+.+.+++|.++|++|++++|.||+|..|-..+...-....+.-.+.+ 
T Consensus       160 ~~~l~~~~~--~~~~~~~~~nP-~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi  235 (409)
T PLN00143        160 LDAVEAIAD--ENTIAMVIINP-GNPCGS-VYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVI  235 (409)
T ss_pred             HHHHHHhcc--cCCEEEEEECC-CCCCCC-ccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEE
Confidence            566776654  22355667777 555665 5589999999999999999999999999874333211111111111222 


Q ss_pred             --EEeccccc-CCcceeEEEec-H-HH------HHhchh-------------------h------------hhHHHHHHH
Q psy11784        156 --ITVGKPMG-NGMPIGAVITS-R-KI------AESLNC-------------------L------------DDNRPSGKY  193 (284)
Q Consensus       156 --v~~sK~l~-~G~p~gav~~~-~-~i------~~~~~~-------------------l------------~~~~~~~~~  193 (284)
                        -+|||.++ .|+++|+++++ + .+      .+.+..                   +            +.+++..++
T Consensus       236 ~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~  315 (409)
T PLN00143        236 TLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAF  315 (409)
T ss_pred             EEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence              36899955 68999999983 2 22      221111                   1            123333334


Q ss_pred             HHHHHHhc----------cCceeEEEEec---cc-HHHHHHHH-HHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHH
Q psy11784        194 LVRPLGIN----------LHIFWCLILLS---IT-YYLYRYTR-RMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       194 l~~~L~~~----------~G~~~~i~~~~---~~-~~~~~~~~-~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~  256 (284)
                      +.+.|+++          .|+++++.+..   .. ....+++. .+.++||++.|+..+  .+++|++.  ..+++++++
T Consensus       316 ~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~--~~~~~~l~~  393 (409)
T PLN00143        316 CYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITF--AVEQSSLED  393 (409)
T ss_pred             HHHHHhcCCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEE--cCCHHHHHH
Confidence            44444432          24566666631   01 13455654 446889999987644  47899965  457999999


Q ss_pred             HHHHHHHHHHHH
Q psy11784        257 IVSTLNRIFTSL  268 (284)
Q Consensus       257 ~~~~l~~~l~~~  268 (284)
                      ++++|.+++++.
T Consensus       394 al~rl~~~l~~~  405 (409)
T PLN00143        394 GLGRLKSFCGRH  405 (409)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.41  E-value=3.9e-11  Score=110.35  Aligned_cols=220  Identities=17%  Similarity=0.147  Sum_probs=147.3

Q ss_pred             cHHHHHHHHHHH-ccCCccEEEEcCCCcccchhhhcCC-CCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          2 EANDLALQLARA-YTGRQNIVVVDAAYHGTVNLLLDIS-PRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         2 eA~e~AlklAr~-~~~r~~il~~~~~yHG~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      +|++.++.-.+. .....+|+.....|++......... .....        +..+|.+..  .. . +        .++
T Consensus        72 ~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~--------v~~i~~~~~--~~-~-~--------~~~  131 (371)
T PF00266_consen   72 EALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAE--------VRVIPADPG--GS-L-D--------LED  131 (371)
T ss_dssp             HHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEE--------EEEEEEGTT--SS-C-S--------HHH
T ss_pred             hhhhhhhhccccccccccccccccccccccccccccccccchhh--------hcccccccc--ch-h-h--------hhh
Confidence            345555554432 4556788888888888763322221 00000        112232110  00 1 1        577


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      +++.+.   +++..|.+--+....|...|    +++|.++|+++|+++++|=+|+ +|..     -.+.....+|++++|
T Consensus       132 ~~~~l~---~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~-----~id~~~~~~D~~~~s  198 (371)
T PF00266_consen  132 LEEALN---PDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCV-----PIDLDELGADFLVFS  198 (371)
T ss_dssp             HHHHHH---TTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTS-----S--TTTTTESEEEEE
T ss_pred             hhhhhc---cccceEEeecccccccEEee----eceehhhhhccCCceeEechhc-cccc-----cccccccccceeeec
Confidence            888775   67888999999999999998    9999999999999999999886 4322     122233457988776


Q ss_pred             --ccccCCcceeEEEecHHHHHhchh-----------------------------------------------------h
Q psy11784        160 --KPMGNGMPIGAVITSRKIAESLNC-----------------------------------------------------L  184 (284)
Q Consensus       160 --K~l~~G~p~gav~~~~~i~~~~~~-----------------------------------------------------l  184 (284)
                        | +.|+..+|++..+++..+.+..                                                     .
T Consensus       199 ~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~  277 (371)
T PF00266_consen  199 SHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIR  277 (371)
T ss_dssp             STS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc-cCCCCchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccch
Confidence              9 8887678999999988877632                                                     1


Q ss_pred             hhHHHHHHHHHHHHHhc-------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCC----------CEE
Q psy11784        185 DDNRPSGKYLVRPLGIN-------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYG----------NVL  241 (284)
Q Consensus       185 ~~~~~~~~~l~~~L~~~-------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~----------~~l  241 (284)
                      ++..++.+++++.|.++             .+.++.+.+.  ......+.+.|.++||.+..+....          +.+
T Consensus       278 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~i  355 (371)
T PF00266_consen  278 ERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLP--GSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVI  355 (371)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEET--TSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEE
T ss_pred             hhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeec--CCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEE
Confidence            25566677777777775             2345555552  2346788999999999999843322          799


Q ss_pred             EEEcCCCCCHHHHHHH
Q psy11784        242 LFLPAMCLTTENVLFI  257 (284)
Q Consensus       242 r~~p~l~~t~~~id~~  257 (284)
                      |++++...|++|||++
T Consensus       356 RvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  356 RVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             EEE-GTTSSHHHHHHH
T ss_pred             EEeccCCCCHHHHhhC
Confidence            9999999999999975

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.41  E-value=4.3e-11  Score=111.03  Aligned_cols=179  Identities=12%  Similarity=0.017  Sum_probs=118.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC-cccc----ccccCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-HFWA----FQTQGA  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~~a----~~~~g~  151 (284)
                      .+++++.+.   .++.+|++..-++-.|. +.+.+.+++|.++|++||+++|.||+|..+...+. ....    ....+.
T Consensus       155 ~~~l~~~~~---~~~k~i~l~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~  230 (393)
T TIGR03538       155 FDAVPESVW---RRCQLLFVCSPGNPTGA-VLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGR  230 (393)
T ss_pred             HHHHHHHHh---hcceEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccc
Confidence            456666554   24566655433555676 56899999999999999999999999986633221 0101    111111


Q ss_pred             --CCcE---EEeccccc-CCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHH
Q psy11784        152 --VPDI---ITVGKPMG-NGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       152 --~pDi---v~~sK~l~-~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~  195 (284)
                        .+.+   -+|||.++ .|+++|++++++++++.+..                              .+.++++.+.+.
T Consensus       231 ~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  310 (393)
T TIGR03538       231 DDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVL  310 (393)
T ss_pred             cccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence              1223   37899865 68999999999988776543                              113444455555


Q ss_pred             HHHHhc-------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----------CCEEEEEcCCCCCHHHHHHH
Q psy11784        196 RPLGIN-------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----------GNVLLFLPAMCLTTENVLFI  257 (284)
Q Consensus       196 ~~L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----------~~~lr~~p~l~~t~~~id~~  257 (284)
                      +.|++.       .|+++++++ +  ....++++.|+ ++||.+.|+..+          .+++|++.  ..++++++++
T Consensus       311 ~~L~~~~~~~~p~gg~f~~~~~-~--~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~--~~~~~~l~~~  385 (393)
T TIGR03538       311 EILGQVLDLELPDAGFYLWPKV-P--GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIAL--VAPLEECVEA  385 (393)
T ss_pred             HHHHhhCcccCCCeeEEEEEEC-C--CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEe--cCCHHHHHHH
Confidence            555542       466777776 3  23467888876 579999887543          36889964  4579999999


Q ss_pred             HHHHHHH
Q psy11784        258 VSTLNRI  264 (284)
Q Consensus       258 ~~~l~~~  264 (284)
                      +++|.++
T Consensus       386 l~~l~~~  392 (393)
T TIGR03538       386 AERIRSF  392 (393)
T ss_pred             HHHHHHh
Confidence            9999764

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.40  E-value=5.9e-11  Score=110.57  Aligned_cols=174  Identities=19%  Similarity=0.148  Sum_probs=119.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++..|++..+.+..|.+.+    +++|.++|+++|+++++|++|+ +|..-   ....  ...+|++
T Consensus       154 ~~~l~~~i~---~~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~---~~~~--~~~~D~~  220 (406)
T PRK09295        154 LETLPALFD---ERTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP---VDVQ--ALDCDFY  220 (406)
T ss_pred             HHHHHHhcC---CCcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc---cCch--hcCCCEE
Confidence            566777664   45677888888888898887    8999999999999999999996 43321   1222  3457888


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhch----------------------------h-----------------------
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESLN----------------------------C-----------------------  183 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~~----------------------------~-----------------------  183 (284)
                      ++|  |.+| ...+|++++++++.+.+.                            .                       
T Consensus       221 ~~s~~K~~g-p~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~  299 (406)
T PRK09295        221 VFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGL  299 (406)
T ss_pred             EeehhhccC-CCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCH
Confidence            776  9554 224788988887754321                            0                       


Q ss_pred             ---hhhHHHHHHHHHHHHHhccC----------ceeEEEEecccHHHHHHHHHHHHCCcEEeecCC----------CCCE
Q psy11784        184 ---LDDNRPSGKYLVRPLGINLH----------IFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----------YGNV  240 (284)
Q Consensus       184 ---l~~~~~~~~~l~~~L~~~~G----------~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~~~  240 (284)
                         .++.+++.+++.+.|+++.|          .++.+.+ + ......+.+.|.++||.++.+..          .++.
T Consensus       300 ~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~-~-~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~  377 (406)
T PRK09295        300 NNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNL-G-KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAM  377 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEE-C-CcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCE
Confidence               12444566666777665411          1233333 2 12345677888899999975421          1357


Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        241 LLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       241 lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +|++|+...|++|||.+++.|+++..
T Consensus       378 iRiS~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        378 CRASLAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             EEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988643

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.40  E-value=8.9e-12  Score=114.10  Aligned_cols=168  Identities=15%  Similarity=0.161  Sum_probs=114.9

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEeccccc-CCcce
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG-NGMPI  168 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~-~G~p~  168 (284)
                      +..+|++...++..|... |.+.+++|.++|++ ++++|.||+|..|...+......+..+-..-+.+|||.++ .|+++
T Consensus       154 ~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi  231 (357)
T PRK14809        154 GERIVYLTSPHNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRL  231 (357)
T ss_pred             CCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhh
Confidence            345666666667677654 67778888888865 7899999999987543321111111111222447899998 79999


Q ss_pred             eEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc----cCceeEEEEecccHH
Q psy11784        169 GAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN----LHIFWCLILLSITYY  216 (284)
Q Consensus       169 gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~----~G~~~~i~~~~~~~~  216 (284)
                      |++++++++++.+..                            .+.++++.+++.+.|...    .|.++++.+.    .
T Consensus       232 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~g~f~~~~~~----~  307 (357)
T PRK14809        232 GYAVVPEEWADAYARVNTPFAASELACRAGLAALDDDEHVERTVETARWAREYIREELDAPTWESAGNFVLAEVG----D  307 (357)
T ss_pred             eeeecCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCCEEEEECC----C
Confidence            999999998887654                            113334444455555432    5677777762    2


Q ss_pred             HHHHHHHHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        217 LYRYTRRMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       217 ~~~~~~~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ..++++.|.++||++.++..+  .+.+|++.  . +++++++++++|.++++
T Consensus       308 ~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~--~-~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        308 ASAVAEAAQERGVIVRDCTSFGLPECIRITC--G-TREETERAVEVLNEVLA  356 (357)
T ss_pred             HHHHHHHHHHCCEEEEECccCCCCCeEEEec--C-CHHHHHHHHHHHHHHhc
Confidence            567888899999999987654  36899973  3 68999999999988764

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.40  E-value=4.2e-11  Score=113.61  Aligned_cols=191  Identities=15%  Similarity=0.174  Sum_probs=122.5

Q ss_pred             HHHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-ccc---
Q psy11784         77 AQAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQ---  149 (284)
Q Consensus        77 ~~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~---  149 (284)
                      .+.+++.++.   ...++.+|++-.-++-.|. .++++.+++|.++|++||+++|.||+|..+-..+..+-.. ...   
T Consensus       175 ~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~-~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~  253 (468)
T PLN02450        175 ESALEEAYQQAQKLNLKVKGVLITNPSNPLGT-TTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDR  253 (468)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEecCCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhc
Confidence            4556666542   2334665555432455665 5689999999999999999999999998753333211111 111   


Q ss_pred             ---CC-CCc----EEEeccccc-CCcceeEEEecHH-HHHhchh--------------------------------hhhH
Q psy11784        150 ---GA-VPD----IITVGKPMG-NGMPIGAVITSRK-IAESLNC--------------------------------LDDN  187 (284)
Q Consensus       150 ---g~-~pD----iv~~sK~l~-~G~p~gav~~~~~-i~~~~~~--------------------------------l~~~  187 (284)
                         +. .++    +-+|||.++ .|+++|+++++++ +.+.+..                                .+++
T Consensus       254 ~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l  333 (468)
T PLN02450        254 KLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRL  333 (468)
T ss_pred             ccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence               11 122    347899998 8999999999744 4443322                                1133


Q ss_pred             HHHHHHHHHHHHhc--------cCceeEEEEec---cc--HHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCC
Q psy11784        188 RPSGKYLVRPLGIN--------LHIFWCLILLS---IT--YYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCL  249 (284)
Q Consensus       188 ~~~~~~l~~~L~~~--------~G~~~~i~~~~---~~--~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~  249 (284)
                      +++.+.+.+.|++.        .|+++++.+..   ..  ....++++.++ ++||.+.|+..+    .+++|++... .
T Consensus       334 ~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~  412 (468)
T PLN02450        334 KQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-M  412 (468)
T ss_pred             HHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-C
Confidence            34444555555543        46677777631   11  12345677776 579999987543    4689996443 4


Q ss_pred             CHHHHHHHHHHHHHHHHHHh
Q psy11784        250 TTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       250 t~~~id~~~~~l~~~l~~~~  269 (284)
                      +++++++++++|.+++.+..
T Consensus       413 ~~~~l~~~l~ri~~~l~~~~  432 (468)
T PLN02450        413 SEETLDLAMKRLKSFVESDS  432 (468)
T ss_pred             CHHHHHHHHHHHHHHHHhcc
Confidence            79999999999999998766

>PLN02656 tyrosine transaminase

Probab=99.40  E-value=1.7e-10  Score=107.63  Aligned_cols=187  Identities=16%  Similarity=0.118  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD--  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD--  154 (284)
                      .+.+++.+.  ....+.+++.| ++-.|. .++++.+++|.++|++||+++|+||+|..|-..++.+-....++-...  
T Consensus       159 ~~~l~~~~~--~~~~~v~l~~P-~NPtG~-~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi  234 (409)
T PLN02656        159 LDAVEALAD--QNTVALVIINP-GNPCGN-VYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVL  234 (409)
T ss_pred             HHHHHHHhc--cCceEEEEECC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEE
Confidence            566666664  22345556666 445565 458889999999999999999999999977433421111111111111  


Q ss_pred             -EEEeccccc-CCcceeEEEec--------HHHHHhchh-------------------h------------hhHHHHHHH
Q psy11784        155 -IITVGKPMG-NGMPIGAVITS--------RKIAESLNC-------------------L------------DDNRPSGKY  193 (284)
Q Consensus       155 -iv~~sK~l~-~G~p~gav~~~--------~~i~~~~~~-------------------l------------~~~~~~~~~  193 (284)
                       +-+|||.++ .|+++|+++++        +++++.+..                   +            +.++++.+.
T Consensus       235 ~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~  314 (409)
T PLN02656        235 TLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDI  314 (409)
T ss_pred             EEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence             236899954 68999999983        456554432                   1            134444555


Q ss_pred             HHHHHHhc----------cCceeEEEEecc----cHHHHH-HHHHHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHH
Q psy11784        194 LVRPLGIN----------LHIFWCLILLSI----TYYLYR-YTRRMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       194 l~~~L~~~----------~G~~~~i~~~~~----~~~~~~-~~~~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~  256 (284)
                      +.+.|+++          .|+++++.+...    ...... +.+.|.++||++.|+..+  .+++|++..  .+++++++
T Consensus       315 ~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~e  392 (409)
T PLN02656        315 CCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEE  392 (409)
T ss_pred             HHHHHhhCCCCcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHH
Confidence            66666553          245556665210    012334 446677899999987543  468999755  48999999


Q ss_pred             HHHHHHHHHHHHh
Q psy11784        257 IVSTLNRIFTSLQ  269 (284)
Q Consensus       257 ~~~~l~~~l~~~~  269 (284)
                      ++++|.+++....
T Consensus       393 al~rl~~~~~~~~  405 (409)
T PLN02656        393 ALGRIKSFYLRHS  405 (409)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887543

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.39  E-value=4.9e-11  Score=114.56  Aligned_cols=183  Identities=16%  Similarity=0.187  Sum_probs=115.5

Q ss_pred             HHHHHHHHHhcCCCeeEE-EEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATL-ICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaav-i~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++++.+.   +++.+| ++.| ++-.|.+ .+++.+++|.++|++||+++|+||+|..|-..|.......  ...||.
T Consensus       271 ~~~l~~~~~---~~~k~i~i~nP-~NPTG~v-~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~--~~~~~~  343 (517)
T PRK13355        271 IDDIRSKIT---SRTKAIVIINP-NNPTGAL-YPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIA--SLAPDL  343 (517)
T ss_pred             HHHHHHhcC---cCceEEEEECC-CCCCCcC-cCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHH--HhCCCC
Confidence            566666554   345444 5666 5556764 5799999999999999999999999987633332111111  123443


Q ss_pred             -----EEeccccc-CCcceeEEEec--HH----HHHhchh-------------------hh-------------hHHHHH
Q psy11784        156 -----ITVGKPMG-NGMPIGAVITS--RK----IAESLNC-------------------LD-------------DNRPSG  191 (284)
Q Consensus       156 -----v~~sK~l~-~G~p~gav~~~--~~----i~~~~~~-------------------l~-------------~~~~~~  191 (284)
                           -+|||.++ .|+++|+++++  ++    +++.+..                   ++             +..++.
T Consensus       344 ~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r  423 (517)
T PRK13355        344 FCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQR  423 (517)
T ss_pred             eEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence                 24799986 58999999954  43    2222211                   11             123345


Q ss_pred             HHHHHHHHhc---------cCceeEEEEecc---cHHHHHHH-HHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHH
Q psy11784        192 KYLVRPLGIN---------LHIFWCLILLSI---TYYLYRYT-RRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENV  254 (284)
Q Consensus       192 ~~l~~~L~~~---------~G~~~~i~~~~~---~~~~~~~~-~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~i  254 (284)
                      +++.+.|+++         .|+++++.+...   ......++ +.|.++||++.|+..+    .+++|++.  ..+++++
T Consensus       424 ~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~--~~~~~~l  501 (517)
T PRK13355        424 ELVYNALNAIPGISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY--LPRLEDL  501 (517)
T ss_pred             HHHHHHHhcCCCcccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEe--CCCHHHH
Confidence            5666666653         333445455211   01233444 4566889999987544    46899974  5789999


Q ss_pred             HHHHHHHHHHHHHH
Q psy11784        255 LFIVSTLNRIFTSL  268 (284)
Q Consensus       255 d~~~~~l~~~l~~~  268 (284)
                      ++++++|.++++..
T Consensus       502 ~~a~~rl~~~~~~~  515 (517)
T PRK13355        502 EDAMDRLADFFSYY  515 (517)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998754

>PRK09265 aminotransferase AlaT; Validated

Probab=99.39  E-value=1e-10  Score=108.84  Aligned_cols=184  Identities=13%  Similarity=0.112  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD--  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD--  154 (284)
                      .+++++.+.   +++.+|++...++..|. ..+.+-+++|.++|++||+++|+||+|..|-..+........  ..++  
T Consensus       158 ~~~l~~~~~---~~~~~v~l~~P~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~~  231 (404)
T PRK09265        158 LDDIRSKIT---PRTKAIVIINPNNPTGA-VYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIAS--LAPDLL  231 (404)
T ss_pred             HHHHHHhcc---ccceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHH--cCCCce
Confidence            456666554   34555554433555665 457899999999999999999999999876333321111111  1232  


Q ss_pred             E---EEeccccc-CCcceeEEEec--HH----HHHhchh-------------------hh-------------hHHHHHH
Q psy11784        155 I---ITVGKPMG-NGMPIGAVITS--RK----IAESLNC-------------------LD-------------DNRPSGK  192 (284)
Q Consensus       155 i---v~~sK~l~-~G~p~gav~~~--~~----i~~~~~~-------------------l~-------------~~~~~~~  192 (284)
                      +   -+|||.++ .|+++|+++++  ++    +.+.+..                   ++             ++.++.+
T Consensus       232 vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~  311 (404)
T PRK09265        232 CVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRD  311 (404)
T ss_pred             EEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence            2   25799995 68999999963  32    3222210                   11             2333444


Q ss_pred             HHHHHHHhc---------cCceeEEEEecc----cHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHH
Q psy11784        193 YLVRPLGIN---------LHIFWCLILLSI----TYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       193 ~l~~~L~~~---------~G~~~~i~~~~~----~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id  255 (284)
                      ++.+.|+++         .|+++++.+.+.    ......+.+.|.++||++.|+..+    .+++|++.  ..++++++
T Consensus       312 ~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~  389 (404)
T PRK09265        312 RAWELLNAIPGVSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLE  389 (404)
T ss_pred             HHHHHHhcCCCCcccCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHH
Confidence            555556543         456667666311    123445667788999999987543    46899975  46899999


Q ss_pred             HHHHHHHHHHHHH
Q psy11784        256 FIVSTLNRIFTSL  268 (284)
Q Consensus       256 ~~~~~l~~~l~~~  268 (284)
                      +++++|.++++..
T Consensus       390 ~~l~rl~~~l~~~  402 (404)
T PRK09265        390 EAIGRIGRFLSGY  402 (404)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988653

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.39  E-value=3.8e-11  Score=109.94  Aligned_cols=167  Identities=16%  Similarity=0.162  Sum_probs=115.1

Q ss_pred             CeeE-EEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE---EEeccccc-C
Q psy11784         90 NIAT-LICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI---ITVGKPMG-N  164 (284)
Q Consensus        90 ~vaa-vi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi---v~~sK~l~-~  164 (284)
                      ++.+ ++..| ++-.|. ..+.+.+++|.++|++||+++|+||+|..|-..+...-........+.+   -+|||.++ .
T Consensus       141 ~~~~v~~~~P-~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~  218 (354)
T PRK06358        141 EIDLVFLCNP-NNPTGQ-LISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIP  218 (354)
T ss_pred             CCCEEEEeCC-CCCCCC-ccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCc
Confidence            3444 45667 555665 5689999999999999999999999998774333201111112222333   37899999 8


Q ss_pred             CcceeEEEec-HHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc--------cCceeE
Q psy11784        165 GMPIGAVITS-RKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN--------LHIFWC  207 (284)
Q Consensus       165 G~p~gav~~~-~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~--------~G~~~~  207 (284)
                      |+++|+++++ +.+.+.+..                            .+.++++.+++.+.|++.        .|.+++
T Consensus       219 G~RiG~lv~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~  298 (354)
T PRK06358        219 GLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFIF  298 (354)
T ss_pred             chhheeeecCCHHHHHHHHHhCCCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcceEEE
Confidence            9999999984 666665543                            123455566666667553        344555


Q ss_pred             EEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        208 LILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       208 i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      +.+. .   ..++++.|.++||.+.++..+    .+++|++   .-++++.+++++.|++++
T Consensus       299 ~~~~-~---~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        299 FKLE-K---PIDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLKALEVIL  353 (354)
T ss_pred             EEcC-c---hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence            5552 2   368899999999999987543    3579996   558899999999998765

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.39  E-value=7e-11  Score=108.95  Aligned_cols=178  Identities=17%  Similarity=0.138  Sum_probs=119.6

Q ss_pred             HHHHHHHHHhc-CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc-
Q psy11784         77 AQAARNIMEAH-RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD-  154 (284)
Q Consensus        77 ~~~l~~~i~~~-~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD-  154 (284)
                      ++++++.++.. ..++.+|++-+-++-.|... +++.++++.++|  +++++|.||+|..|... . ..  ....-.+. 
T Consensus       154 ~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~-~-~~--~~~~~~~~~  226 (374)
T PRK02610        154 LAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQT-T-LV--GELAQHPNW  226 (374)
T ss_pred             HHHHHHHHHhhcCCCceEEEEeCCCCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCcc-c-hH--HHHhcCCCE
Confidence            56777777531 13577776655477677654 777788898887  49999999999877321 1 11  11111233 


Q ss_pred             --EEEeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        155 --IITVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       155 --iv~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                        +-+|||.++ .|+++|++++++++++.+..                            +.+..+..+.+.+.|+++  
T Consensus       227 ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~  306 (374)
T PRK02610        227 VILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRLPYNLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQ  306 (374)
T ss_pred             EEEEecchhccCcccceeeeecCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence              337899996 69999999999998877654                            112223344455555543  


Q ss_pred             ------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 ------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                            .|.++++.+ +.......+++.|.++||++.+.   .+.+|++.  . +++++++++++|.++++.+
T Consensus       307 ~~~~p~~g~f~~~~l-~~~~~~~~~~~~l~~~gi~v~~~---~~~lRls~--~-~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        307 LRVWPSAANFLYLRL-SQDAALAALHQALKAQGTLVRHT---GGGLRITI--G-TPEENQRTLERLQAALTQL  372 (374)
T ss_pred             cEeCCCcceEEEEeC-CCCCCHHHHHHHHHHCCEEEEeC---CCeEEEeC--C-CHHHHHHHHHHHHHHHhhc
Confidence                  455666666 33235678889999999999753   47899963  3 4678999999999887654

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.39  E-value=9.5e-11  Score=108.91  Aligned_cols=176  Identities=15%  Similarity=0.101  Sum_probs=120.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++..+.+..|...+    +++|.++|++||+++|+|++|. +|..   ....  ....+|++
T Consensus       149 ~~~l~~~i~---~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~---~~~~--~~~~~d~~  215 (403)
T TIGR01979       149 LDDLEKLLT---EKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM---PVDV--QALDCDFY  215 (403)
T ss_pred             HHHHHHHhc---cCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc---ccCc--cccCCCEE
Confidence            466666664   45778888888888898887    9999999999999999999996 3221   1111  22357887


Q ss_pred             Ee--cccccCCcceeEEEecHHHHHhch------------------------------h---------------------
Q psy11784        157 TV--GKPMGNGMPIGAVITSRKIAESLN------------------------------C---------------------  183 (284)
Q Consensus       157 ~~--sK~l~~G~p~gav~~~~~i~~~~~------------------------------~---------------------  183 (284)
                      ++  .|.+| ...+|++++++++.+.+.                              .                     
T Consensus       216 ~~s~~K~~g-p~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~  294 (403)
T TIGR01979       216 VFSGHKMYG-PTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLE  294 (403)
T ss_pred             EEecccccC-CCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHH
Confidence            54  59764 224788888888765431                              0                     


Q ss_pred             --hhhHHHHHHHHHHHHHhcc-------------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCC----------CC
Q psy11784        184 --LDDNRPSGKYLVRPLGINL-------------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----------YG  238 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~~-------------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~  238 (284)
                        .++..++.+++.+.|+++.             +.++.+.+. . ....++.+.|.++||.+.++..          ..
T Consensus       295 ~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~  372 (403)
T TIGR01979       295 NIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVE-G-VHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVP  372 (403)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeC-C-cCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCC
Confidence              1244455566666665531             234444442 1 2355788888999999975320          14


Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        239 NVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       239 ~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +.+|++++...|++|++++++.|+++++.+
T Consensus       373 ~~iRiS~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       373 ATCRASFYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             CEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999877654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PLN02231 alanine transaminase

Probab=99.39  E-value=1e-10  Score=112.36  Aligned_cols=192  Identities=16%  Similarity=0.141  Sum_probs=122.6

Q ss_pred             HHHHHHHHHhc---CCCeeE-EEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccc-cCcccccccc--
Q psy11784         77 AQAARNIMEAH---RDNIAT-LICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRS-GSHFWAFQTQ--  149 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~vaa-vi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~-G~~~~a~~~~--  149 (284)
                      +++|++.++..   ...+.+ +++.| ++-.|. +.+++.+++|.++|++||++||.||+|..+-.. +..+..+...  
T Consensus       255 ~~~Le~~l~~~~~~~~~~k~ivl~nP-~NPTG~-vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~  332 (534)
T PLN02231        255 ISELKKQLEDARSKGITVRALVVINP-GNPTGQ-VLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVAR  332 (534)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEEeCC-CCCCCc-CCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHh
Confidence            67777777632   114555 45555 445665 669999999999999999999999999876332 2212121111  


Q ss_pred             --CC---CCcEE---Eeccccc--CCcceeEEEe---cHHHHHhchh-------------------h-------------
Q psy11784        150 --GA---VPDII---TVGKPMG--NGMPIGAVIT---SRKIAESLNC-------------------L-------------  184 (284)
Q Consensus       150 --g~---~pDiv---~~sK~l~--~G~p~gav~~---~~~i~~~~~~-------------------l-------------  184 (284)
                        |.   ...++   ++||++.  .|+++|++++   ++++++.+..                   +             
T Consensus       333 ~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~  412 (534)
T PLN02231        333 SMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESY  412 (534)
T ss_pred             hhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchHHHH
Confidence              11   11244   6799985  4999999986   5777776543                   1             


Q ss_pred             --------hhHHHHHHHHHHHHHhc---------cCceeEEEEe-cccH----------HHHHHHHHHH-HCCcEEeecC
Q psy11784        185 --------DDNRPSGKYLVRPLGIN---------LHIFWCLILL-SITY----------YLYRYTRRMK-EAKIIVANEG  235 (284)
Q Consensus       185 --------~~~~~~~~~l~~~L~~~---------~G~~~~i~~~-~~~~----------~~~~~~~~l~-~~Gv~~~~~~  235 (284)
                              +.++++.+.+.+.|+++         .|++.+..+. +...          ....++..|+ +.||.+.|+.
T Consensus       413 ~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs  492 (534)
T PLN02231        413 MAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGS  492 (534)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCc
Confidence                    12344455566666554         3344442332 2110          1223566666 5699999986


Q ss_pred             CCC-----CEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhcc
Q psy11784        236 EYG-----NVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMDS  272 (284)
Q Consensus       236 ~~~-----~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~~  272 (284)
                      .++     .++|++  +..+++++++++++|.+++++..++.
T Consensus       493 ~Fg~~~g~~~~Rit--~~~~~e~l~eal~RL~~~~~~~~~~~  532 (534)
T PLN02231        493 GFGQVPGTWHFRCT--ILPQEDKIPAIVSRLTEFHKSFMDEF  532 (534)
T ss_pred             ccCCCCCCCeEEEE--eCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            543     368886  56789999999999999998876543

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.38  E-value=2.1e-11  Score=111.94  Aligned_cols=168  Identities=17%  Similarity=0.115  Sum_probs=115.3

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc--cCCC-CcE---EEecccc
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT--QGAV-PDI---ITVGKPM  162 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~--~g~~-pDi---v~~sK~l  162 (284)
                      .++.+|++...++..|.+ .+.+.+++|.++|++||+++|.||+|..|...+........  .+.. +.+   -+|||.+
T Consensus       147 ~~~~~v~~~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  225 (364)
T PRK07865        147 QRPALIWLNSPSNPTGRV-LGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS  225 (364)
T ss_pred             ccceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc
Confidence            357788887667767764 47889999999999999999999999877443431111111  0111 122   3689999


Q ss_pred             c-CCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc--------cC
Q psy11784        163 G-NGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN--------LH  203 (284)
Q Consensus       163 ~-~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~--------~G  203 (284)
                      + .|+++|++++++++++.+..                              .+.++++.+.+.+.|++.        .|
T Consensus       226 ~~~GlRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  305 (364)
T PRK07865        226 NLAGYRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAAGFRVDHSEAG  305 (364)
T ss_pred             CCCceeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCcc
Confidence            6 68999999999998776543                              113445556666666653        34


Q ss_pred             ceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        204 IFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       204 ~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      +++++.+.   .....+++.|.++||++.|+..+    .+++|+...  .+++++++++++|.
T Consensus       306 ~~~~~~~~---~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~~~~~~~l~  363 (364)
T PRK07865        306 LYLWATRG---EDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALT--ATDERIAAAVERLA  363 (364)
T ss_pred             EEEEEeCC---CCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEec--CCHHHHHHHHHHhh
Confidence            45555542   23456788899999999886432    468999754  47899999998874

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.38  E-value=8.3e-11  Score=108.72  Aligned_cols=173  Identities=12%  Similarity=0.035  Sum_probs=115.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI-  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi-  155 (284)
                      ++.+++.+.  ..++.+|++....+..|...+    .+++.++++.. +++|+||+|..|...+. ...  ...-.+.+ 
T Consensus       164 ~~~l~~~~~--~~~~~~v~l~~P~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~-~~~--~~~~~~~vi  233 (380)
T PLN03026        164 VPRIVEAVE--THKPKLLFLTSPNNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQES-RMK--WVKKYDNLI  233 (380)
T ss_pred             HHHHHHHHh--ccCCcEEEEeCCCCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcc-hHH--HHHhCCCEE
Confidence            566766663  234667777766777887765    55556666544 99999999987743232 111  11112333 


Q ss_pred             --EEeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        156 --ITVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       156 --v~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                        -+|||.++ .|+++|++++++++++.+..                            .+.+++..+++.+.|+++   
T Consensus       234 v~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  313 (380)
T PLN03026        234 VLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFL  313 (380)
T ss_pred             EEecchHhhcCccccceeeecCHHHHHHHHHhcCCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence              37899998 79999999999999887654                            124555666777777764   


Q ss_pred             -----cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 -----LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 -----~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                           .|.++.+.+ +......++++.|.++||.++++..  ..+++|++..   ++++.+.+++.|++
T Consensus       314 ~~~p~~~~f~~~~~-~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al~~  378 (380)
T PLN03026        314 EPYPSDANFILCRV-TSGRDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---KPEHTDALMEALKQ  378 (380)
T ss_pred             eECCCCCeEEEEEC-CCCCCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---CHHHHHHHHHHHHH
Confidence                 344555554 2223467899999999999987642  2468999643   77888988888865

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.37  E-value=2.3e-11  Score=111.37  Aligned_cols=166  Identities=17%  Similarity=0.126  Sum_probs=115.0

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cc--cCC--CCcEE--Eeccc
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QT--QGA--VPDII--TVGKP  161 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~--~g~--~pDiv--~~sK~  161 (284)
                      +++.+|++...++..|. ..+.+.+++|.++|++||+++|.||+|..|...+. .... ..  .+.  ..-++  +|||.
T Consensus       141 ~~~~~v~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~vi~~~S~SK~  218 (357)
T TIGR03539       141 VGPDLIWLNSPGNPTGR-VLSVDELRAIVAWARERGAVVASDECYLELGWEGR-PVSILDPRVCGGDHTGLLAVHSLSKR  218 (357)
T ss_pred             cCccEEEEeCCCCCcCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCC-CccceecccCCCccccEEEEeccccc
Confidence            35778888776666675 55889999999999999999999999987754343 1111 10  011  11233  78999


Q ss_pred             cc-CCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc--------c
Q psy11784        162 MG-NGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN--------L  202 (284)
Q Consensus       162 l~-~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~--------~  202 (284)
                      ++ .|+++|++++++++++.+..                              .+.++++.+++.+.|++.        .
T Consensus       219 ~~~~G~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p~~  298 (357)
T TIGR03539       219 SNLAGYRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKAGFRIDHSEA  298 (357)
T ss_pred             cCCCceeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCc
Confidence            85 68999999999988776643                              113445566666666653        3


Q ss_pred             CceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        203 HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       203 G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                      |+++++.+ +  .....+.+.|.++||.+.|+..+    .+.+|++..  .+++++++++++|
T Consensus       299 ~~~~~~~~-~--~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~--~~~~~i~~~~~~l  356 (357)
T TIGR03539       299 GLYLWATR-G--EDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALT--ATDERIAAAVARL  356 (357)
T ss_pred             cEEEEEEC-C--CCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEec--CCHHHHHHHHHhh
Confidence            34445544 2  24567888899999999986532    478999764  4789999999876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02187 rooty/superroot1

Probab=99.37  E-value=1.7e-10  Score=109.36  Aligned_cols=189  Identities=14%  Similarity=0.095  Sum_probs=118.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-CCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-g~~pDi  155 (284)
                      ++++++.++  ....+.++.-| .+-.|. +.+.+.+++|.++|++||+++|.||+|..|-..|..+.....+ +..+-+
T Consensus       194 ~~~l~~~~~--~~~~~v~i~nP-~NPTG~-v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi  269 (462)
T PLN02187        194 LEGIEAIAD--ENTVAMVVINP-NNPCGN-VYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVL  269 (462)
T ss_pred             HHHHHHhcC--CCcEEEEEeCC-CCCCCC-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEE
Confidence            566766654  22255667777 344564 5689999999999999999999999999763333211121111 121222


Q ss_pred             --EEeccccc-CCcceeEEEec-H-HH---HHhchh----------------------h------------hhHHHHHHH
Q psy11784        156 --ITVGKPMG-NGMPIGAVITS-R-KI---AESLNC----------------------L------------DDNRPSGKY  193 (284)
Q Consensus       156 --v~~sK~l~-~G~p~gav~~~-~-~i---~~~~~~----------------------l------------~~~~~~~~~  193 (284)
                        -+|||.++ .|+++|++++. + .+   ++.+..                      +            +.++++.++
T Consensus       270 ~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~  349 (462)
T PLN02187        270 TLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDL  349 (462)
T ss_pred             EEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence              26899965 68999999983 2 22   111111                      1            134445555


Q ss_pred             HHHHHHhc----------cCceeEEEEec---cc-HHHHHHHH-HHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHH
Q psy11784        194 LVRPLGIN----------LHIFWCLILLS---IT-YYLYRYTR-RMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       194 l~~~L~~~----------~G~~~~i~~~~---~~-~~~~~~~~-~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~  256 (284)
                      +.+.|+++          .|.++++.+..   .. ....+++. .+.++||++.|+..+  .+++|++.  ...++.+++
T Consensus       350 l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~--~~~~e~l~~  427 (462)
T PLN02187        350 VCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITI--GVEAHMLED  427 (462)
T ss_pred             HHHHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEe--CCCHHHHHH
Confidence            66666653          13444554421   11 12335554 457889999987544  47899964  557999999


Q ss_pred             HHHHHHHHHHHHhhc
Q psy11784        257 IVSTLNRIFTSLQMD  271 (284)
Q Consensus       257 ~~~~l~~~l~~~~~~  271 (284)
                      ++++|.+++++..++
T Consensus       428 al~rL~~~l~~~~~~  442 (462)
T PLN02187        428 ALERLKGFCTRHAKK  442 (462)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999876543

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.37  E-value=2e-10  Score=109.42  Aligned_cols=191  Identities=14%  Similarity=0.135  Sum_probs=121.6

Q ss_pred             HHHHHHHHHhc---CCCeeE-EEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcccc-Cccccccc--c
Q psy11784         77 AQAARNIMEAH---RDNIAT-LICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG-SHFWAFQT--Q  149 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~vaa-vi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G-~~~~a~~~--~  149 (284)
                      .++|++.+...   ..++.+ +++.| ++-.|. ..+.+.+++|.++|++||+++|.||+|..+-..+ ..+-+...  .
T Consensus       202 ~~~l~~~l~~~~~~~~~~k~l~l~~P-~NPTG~-~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~  279 (481)
T PTZ00377        202 QEELEEAYEQAVRNGITPRALVVINP-GNPTGQ-VLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLL  279 (481)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEECC-CCCCCc-CCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHH
Confidence            57777777521   124654 45555 555665 5689999999999999999999999998753322 11111110  1


Q ss_pred             CCCC------cEE---Eecccc-c-CCcceeEEEe---cHHHHHhchh-------------------hh-----------
Q psy11784        150 GAVP------DII---TVGKPM-G-NGMPIGAVIT---SRKIAESLNC-------------------LD-----------  185 (284)
Q Consensus       150 g~~p------Div---~~sK~l-~-~G~p~gav~~---~~~i~~~~~~-------------------l~-----------  185 (284)
                      +..+      .++   +|||++ + .|+++|++++   ++++++.+..                   ++           
T Consensus       280 ~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~  359 (481)
T PTZ00377        280 ELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPL  359 (481)
T ss_pred             hhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHH
Confidence            1222      233   589996 4 5999999986   7888776544                   10           


Q ss_pred             ----------hHHHHHHHHHHHHHhc---------cCceeEEEEe-cccH----------HHHHHH-HHHHHCCcEEeec
Q psy11784        186 ----------DNRPSGKYLVRPLGIN---------LHIFWCLILL-SITY----------YLYRYT-RRMKEAKIIVANE  234 (284)
Q Consensus       186 ----------~~~~~~~~l~~~L~~~---------~G~~~~i~~~-~~~~----------~~~~~~-~~l~~~Gv~~~~~  234 (284)
                                +++++.+.+.+.|+++         .|+++++.+. +...          ....++ ..|.++||.+.|+
T Consensus       360 ~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG  439 (481)
T PTZ00377        360 YKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPG  439 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCC
Confidence                      1234445566666653         2455554442 1110          122344 4455789999987


Q ss_pred             CCCC-----CEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        235 GEYG-----NVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       235 ~~~~-----~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      ..++     +++|++..  .+++++++++++|.+++++..++
T Consensus       440 ~~F~~~~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~~~~~  479 (481)
T PTZ00377        440 SGFGQKPGTYHFRITIL--PPEEQIEEMVKKIKEFHESFMKK  479 (481)
T ss_pred             cccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence            6543     48999754  67899999999999999876544

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.37  E-value=1.5e-10  Score=106.37  Aligned_cols=176  Identities=13%  Similarity=0.093  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcc-ccCccc---cccccCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGR-SGSHFW---AFQTQGAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr-~G~~~~---a~~~~g~~  152 (284)
                      ++++++.++.  ...+.+++.| .+..|.+.+    +++|.++|++||+++|+|++|.++-. ......   ..+..-..
T Consensus       143 ~~~l~~~l~~--~~~~vv~~~~-~~~tG~~~~----~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~  215 (373)
T TIGR03812       143 VKDVEDLIDD--NTIGIVGIAG-TTELGQIDD----IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPG  215 (373)
T ss_pred             HHHHHHHHhh--CcEEEEEECC-CCCCCccCC----HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCC
Confidence            6777777752  2245666776 456788776    99999999999999999999975410 000000   01111013


Q ss_pred             CcEEEec--ccccCCcceeEEE-ecHHHHHhch-------------------h---------------------hhhHHH
Q psy11784        153 PDIITVG--KPMGNGMPIGAVI-TSRKIAESLN-------------------C---------------------LDDNRP  189 (284)
Q Consensus       153 pDiv~~s--K~l~~G~p~gav~-~~~~i~~~~~-------------------~---------------------l~~~~~  189 (284)
                      .|.++++  |...++.|.|+++ .++++.+.+.                   .                     .++..+
T Consensus       216 ~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~  295 (373)
T TIGR03812       216 VQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECME  295 (373)
T ss_pred             CCEEEECccccCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            4665543  7444456777666 4666554321                   0                     235666


Q ss_pred             HHHHHHHHHHhccCce-------eEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        190 SGKYLVRPLGINLHIF-------WCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       190 ~~~~l~~~L~~~~G~~-------~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      +.+++++.|+++ |..       ..+.+..  .....+.+.|.++|+++.... .++++|++++..+|++|+|.+++.|+
T Consensus       296 ~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~--~~~~~v~~~L~~~gi~v~~~~-~~~~iRis~~~~~t~edid~l~~~L~  371 (373)
T TIGR03812       296 NTRYLVEELKKI-GFEPVIEPVLNIVAFEV--DDPEEVRKKLRDRGWYVSVTR-CPKALRIVVMPHVTREHIEEFLEDLK  371 (373)
T ss_pred             HHHHHHHHHHhC-CCeEEcCCCceEEEEEe--CCHHHHHHHHHHCCceeccCC-CCCEEEEEEECCCCHHHHHHHHHHHh
Confidence            777888888774 321       1111111  123578899999999998653 35789999999999999999999997


Q ss_pred             H
Q psy11784        263 R  263 (284)
Q Consensus       263 ~  263 (284)
                      +
T Consensus       372 ~  372 (373)
T TIGR03812       372 E  372 (373)
T ss_pred             h
Confidence            5

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.36  E-value=5.4e-11  Score=109.81  Aligned_cols=178  Identities=10%  Similarity=0.024  Sum_probs=120.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++..|+++.+.+..|.+.+    +++|.++|+++|+++++|++|+ ||...   ...+.+  ..|++
T Consensus       128 ~~~l~~~l~---~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~---~~~~~~--~~d~~  194 (381)
T PRK02948        128 LVDLERAIT---PDTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLP---IDVFEM--GIDSL  194 (381)
T ss_pred             HHHHHHhcC---CCCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-ccccc---cCcccC--CCCEE
Confidence            566776664   45678889988989999887    8999999999999999998886 65432   222233  36766


Q ss_pred             --EecccccCCcceeEEEecHHH-HHhc----------hh-------------------------hhhHHHHHHHHHHHH
Q psy11784        157 --TVGKPMGNGMPIGAVITSRKI-AESL----------NC-------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       157 --~~sK~l~~G~p~gav~~~~~i-~~~~----------~~-------------------------l~~~~~~~~~l~~~L  198 (284)
                        +++|.+|. ..+|++++++++ ...+          ..                         .+++++..+++.+.|
T Consensus       195 ~~s~~K~~gp-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L  273 (381)
T PRK02948        195 SVSAHKIYGP-KGVGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQI  273 (381)
T ss_pred             EecHHhcCCC-CcEEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              56797652 226787777654 1111          00                         235666777777877


Q ss_pred             HhccCceeEE------------EEecccHHHHHHHHHHHHCCcEEeecCC---------------------CCCEEEEEc
Q psy11784        199 GINLHIFWCL------------ILLSITYYLYRYTRRMKEAKIIVANEGE---------------------YGNVLLFLP  245 (284)
Q Consensus       199 ~~~~G~~~~i------------~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------~~~~lr~~p  245 (284)
                      +++ |+-+..            .+........++...|.++||.++.+..                     ..+.+|+++
T Consensus       274 ~~~-~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~  352 (381)
T PRK02948        274 QTL-PLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSF  352 (381)
T ss_pred             hcC-CCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEc
Confidence            764 321110            0001111346677788889999986431                     136899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        246 AMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       246 ~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      ...+|++|+|.+++.|.++++.+.
T Consensus       353 ~~~~t~~di~~l~~~l~~~~~~~~  376 (381)
T PRK02948        353 GQQTTKDQIDTTIHALETIGNQFY  376 (381)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999887653

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.36  E-value=3.4e-10  Score=103.96  Aligned_cols=180  Identities=13%  Similarity=0.086  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+... .++..|.+-...+..|...+    +++|.++|+++|+++|+|.+| .||..   .....  ...+|++
T Consensus       119 ~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~~livDa~~-~~g~~---~~~~~--~~~~d~~  187 (368)
T PRK13479        119 AAEVEAALAAD-PRITHVALVHCETTTGILNP----LDEIAAVAKRHGKRLIVDAMS-SFGAI---PIDIA--ELGIDAL  187 (368)
T ss_pred             HHHHHHHHHhC-CCCcEEEEEcccCccccccC----HHHHHHHHHHcCCEEEEEccc-ccCCc---ccccc--ccCceEE
Confidence            57777777632 34445555555556777777    899999999999999999777 46432   12222  2346776


Q ss_pred             E--ecccccCCcceeEEEecHHHHHhchh--------------------------------------------------h
Q psy11784        157 T--VGKPMGNGMPIGAVITSRKIAESLNC--------------------------------------------------L  184 (284)
Q Consensus       157 ~--~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------------------------l  184 (284)
                      +  ++|++.|...+|++++++++.+.+..                                                  .
T Consensus       188 v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~  267 (368)
T PRK13479        188 ISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARG  267 (368)
T ss_pred             EecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Confidence            4  56988764457999999887543210                                                  2


Q ss_pred             hhHHHHHHHHHHHHHhccCcee----------EEEEe-ccc--HHHHHHHHHHHHCCcEEeecCCC-CCEEEEEcCCCCC
Q psy11784        185 DDNRPSGKYLVRPLGINLHIFW----------CLILL-SIT--YYLYRYTRRMKEAKIIVANEGEY-GNVLLFLPAMCLT  250 (284)
Q Consensus       185 ~~~~~~~~~l~~~L~~~~G~~~----------~i~~~-~~~--~~~~~~~~~l~~~Gv~~~~~~~~-~~~lr~~p~l~~t  250 (284)
                      +++.++.+++++.|+++ |+-.          .+.+. +..  ....++.+.|.++||.+.++... .+.+|+...-..|
T Consensus       268 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t  346 (368)
T PRK13479        268 ARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVD  346 (368)
T ss_pred             HHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCC
Confidence            24555666777777664 4321          12222 211  24568999999999999875332 3589997655679


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy11784        251 TENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       251 ~~~id~~~~~l~~~l~~~  268 (284)
                      ++|++.+++.|+++++++
T Consensus       347 ~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        347 AADIRRLVAAIAEALYWM  364 (368)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999988754

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.36  E-value=4.6e-11  Score=111.59  Aligned_cols=176  Identities=14%  Similarity=0.076  Sum_probs=115.0

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc---EEEecccccCC
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD---IITVGKPMGNG  165 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD---iv~~sK~l~~G  165 (284)
                      ..+.++++-.-++-.|.+ .+.+-+++|.++|++||+++|.||+|.-+-. ...+..... ...+.   +.+|||....|
T Consensus       178 ~~~~~i~l~~P~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~-~~~~~~~~~-~~~~~vI~~~SfSK~~~pG  254 (416)
T PRK09440        178 EDTGAICVSRPTNPTGNV-LTDEELEKLDALARQHNIPLLIDNAYGPPFP-GIIFSEATP-LWNPNIILCMSLSKLGLPG  254 (416)
T ss_pred             CCceEEEEecCCCCCCcc-CCHHHHHHHHHHHHHcCCcEEEeCCccccCC-CcchhhcCc-cccCCeEEEecccccCCCc
Confidence            345555554446667764 5899999999999999999999999963211 100001000 01223   34789975568


Q ss_pred             cceeEEEecHHHHHhchh--------------------hh------h--------HHHHHHHHHHHHHhc----------
Q psy11784        166 MPIGAVITSRKIAESLNC--------------------LD------D--------NRPSGKYLVRPLGIN----------  201 (284)
Q Consensus       166 ~p~gav~~~~~i~~~~~~--------------------l~------~--------~~~~~~~l~~~L~~~----------  201 (284)
                      +++|++++++++++.+..                    ++      +        ++++.+.+++.|.+.          
T Consensus       255 lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~  334 (416)
T PRK09440        255 VRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHK  334 (416)
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEec
Confidence            999999999998877654                    10      1        122233444444321          


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC-----------CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY-----------GNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-----------~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                        .|+++++++........++++.|.++||.+.|+..+           .+++|++.+  .+++++++++++|.+++++.
T Consensus       335 p~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~~~~~~~  412 (416)
T PRK09440        335 PEGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEEIEKGIAILAEEVEKA  412 (416)
T ss_pred             CCCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence              356666666321234567888899999999987432           147999754  47999999999999998775


Q ss_pred             h
Q psy11784        269 Q  269 (284)
Q Consensus       269 ~  269 (284)
                      .
T Consensus       413 ~  413 (416)
T PRK09440        413 Y  413 (416)
T ss_pred             h
Confidence            4

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.36  E-value=1.6e-10  Score=108.20  Aligned_cols=177  Identities=14%  Similarity=0.151  Sum_probs=122.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++..|++.-+.+..|.+.+    +++|.++|+++|+++|+|++|. +|..   ..  ......+|++
T Consensus       163 ~~~l~~~i~---~~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~---~~--~~~~~~~d~~  229 (424)
T PLN02855        163 VEQLKELLS---EKTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHM---PV--DVQTLGADFL  229 (424)
T ss_pred             HHHHHHHhc---cCceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCc---CC--CchhcCCCEE
Confidence            566777665   35778888888888898887    8999999999999999999995 4321   11  2223347877


Q ss_pred             E--ecccccCCcceeEEEecHHHHHhchh---------------------------------------------------
Q psy11784        157 T--VGKPMGNGMPIGAVITSRKIAESLNC---------------------------------------------------  183 (284)
Q Consensus       157 ~--~sK~l~~G~p~gav~~~~~i~~~~~~---------------------------------------------------  183 (284)
                      +  +.| +.|.-.+|++++++++.+.+..                                                   
T Consensus       230 ~~s~~K-~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~  308 (424)
T PLN02855        230 VASSHK-MCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMD  308 (424)
T ss_pred             Eeeccc-ccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHH
Confidence            4  569 4332347899888877554310                                                   


Q ss_pred             --hhhHHHHHHHHHHHHHhccC---------------ceeEEEEecccHHHHHHHHHHHHC-CcEEeecCC---------
Q psy11784        184 --LDDNRPSGKYLVRPLGINLH---------------IFWCLILLSITYYLYRYTRRMKEA-KIIVANEGE---------  236 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~~G---------------~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~---------  236 (284)
                        .++..+..+++++.|+++.|               .++.+.+ + ......+.+.|.++ ||.++.+..         
T Consensus       309 ~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~-~-~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~  386 (424)
T PLN02855        309 RIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNV-E-GIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYL  386 (424)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEE-C-CcCHHHHHHHhcccCCEEEechhhhhHHHHHHh
Confidence              12455566677777765411               1333333 1 12356788888877 999885321         


Q ss_pred             -CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        237 -YGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       237 -~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                       ..+.+|++++...|++|++.+++.|+++++.+.
T Consensus       387 g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~  420 (424)
T PLN02855        387 GVNASARASLYFYNTKEEVDAFIHALKDTIAFFS  420 (424)
T ss_pred             CCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence             135799999999999999999999999987753

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.36  E-value=1.8e-10  Score=105.21  Aligned_cols=172  Identities=16%  Similarity=0.194  Sum_probs=115.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+..  .++.+|++...++..|...+    .+++.++|++++.++|+||+|..|.  +.....  ...-.+.++
T Consensus       137 ~~~l~~~~~~--~~~k~v~l~~p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~~--~~~~~~~vi  206 (351)
T PRK14807        137 VGSFIKVIEK--YQPKLVFLCNPNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY--GNTIVD--VINEFENLI  206 (351)
T ss_pred             HHHHHHHhhc--cCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc--ccchHH--HhhhCCCEE
Confidence            5667776652  24666766666777787766    6778888888888999999998762  321111  111113333


Q ss_pred             ---Eeccccc-CCcceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        157 ---TVGKPMG-NGMPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       157 ---~~sK~l~-~G~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                         +|||.++ .|+++|++++++++++.+..                           ++.++++.+++.+.|+++    
T Consensus       207 ~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~  286 (351)
T PRK14807        207 VLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGIK  286 (351)
T ss_pred             EEecchHhcccchhceeeeecCHHHHHHHHHccCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence               6899998 89999999999999887654                           123445555666666543    


Q ss_pred             ----cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC---CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        202 ----LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE---YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       202 ----~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                          .|.++++.+ +   ....+++.|.++||.+.+...   ..+.+|++..   ++++.+.+++.|++++
T Consensus       287 ~~~~~~~~~~i~~-~---~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        287 VYPSKTNFILVKF-K---DADYVYQGLLERGILVRDFSKVEGLEGALRITVS---SCEANDYLINGLKELL  350 (351)
T ss_pred             ECcCCccEEEEEc-C---CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence                344555555 2   256788899999999986532   2468999633   6788888888887653

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.35  E-value=2.9e-10  Score=105.88  Aligned_cols=185  Identities=12%  Similarity=0.120  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   .+..++++....+..|. ..+.+-+++|.++|+++|+++|+||+|..|-..+..+.....+.-.+.++
T Consensus       159 ~~~l~~~~~---~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi  234 (403)
T TIGR01265       159 LDGLEALAD---EKTVAIVVINPSNPCGS-VFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVL  234 (403)
T ss_pred             HHHHHHHhC---cCccEEEEecCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEE
Confidence            566666654   34455554433555664 56888899999999999999999999998754442111222121112233


Q ss_pred             ---Eeccccc-CCcceeEEEecH--H-----HHHhchh-------------------------------hhhHHHHHHHH
Q psy11784        157 ---TVGKPMG-NGMPIGAVITSR--K-----IAESLNC-------------------------------LDDNRPSGKYL  194 (284)
Q Consensus       157 ---~~sK~l~-~G~p~gav~~~~--~-----i~~~~~~-------------------------------l~~~~~~~~~l  194 (284)
                         +|||.++ .|+++|++++..  +     +.+.+..                               .+.++++.+++
T Consensus       235 ~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  314 (403)
T TIGR01265       235 SLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELC  314 (403)
T ss_pred             EEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence               6899965 689999999842  1     2222111                               11334444556


Q ss_pred             HHHHHhc---------cCceeEEEEecc----cHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHH
Q psy11784        195 VRPLGIN---------LHIFWCLILLSI----TYYLYRYTRRMK-EAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       195 ~~~L~~~---------~G~~~~i~~~~~----~~~~~~~~~~l~-~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~  258 (284)
                      .+.|+..         .|+++++++...    .....++++.++ ++||.+.|+..+  .+.+|++.  ...++.+++++
T Consensus       315 ~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~--~~~~~~l~~~l  392 (403)
T TIGR01265       315 YEELKDIPGLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITI--TVPESMLEEAC  392 (403)
T ss_pred             HHHHhcCCCceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEe--cCCHHHHHHHH
Confidence            5666542         455666666311    013567878764 789999987543  47899975  45788999999


Q ss_pred             HHHHHHHHH
Q psy11784        259 STLNRIFTS  267 (284)
Q Consensus       259 ~~l~~~l~~  267 (284)
                      ++|.+++++
T Consensus       393 ~~l~~~~~~  401 (403)
T TIGR01265       393 SRIKEFCER  401 (403)
T ss_pred             HHHHHHHHh
Confidence            999888754

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.34  E-value=2.5e-10  Score=104.95  Aligned_cols=165  Identities=14%  Similarity=0.103  Sum_probs=114.5

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE---EEeccccc-C
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI---ITVGKPMG-N  164 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi---v~~sK~l~-~  164 (284)
                      +++.+|++...++..|.+. +.+-++++.+.|+ +++++|+||++..|..... .  ....+..+.+   -+|||.++ .
T Consensus       151 ~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~-~--~~~~~~~~~vi~~~SfSK~~gl~  225 (364)
T PRK04781        151 SNAKLVFLCSPSNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFSDVPS-A--VGLLARYDNLAVLRTLSKAHALA  225 (364)
T ss_pred             cCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcc-h--HHHHhhCCCEEEEecChhhcccc
Confidence            3566777665566677755 6777777777775 4899999999987742111 1  1111223443   37899999 8


Q ss_pred             CcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc---------cCce
Q psy11784        165 GMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN---------LHIF  205 (284)
Q Consensus       165 G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~---------~G~~  205 (284)
                      |+++|++++++++++.+..                              ++.++++.+++.+.|+++         .|.+
T Consensus       226 GlRvGy~v~~~~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f  305 (364)
T PRK04781        226 AARIGSLIANAELIAVLRRCQAPYPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNF  305 (364)
T ss_pred             cceeeeeeCCHHHHHHHHhccCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcE
Confidence            9999999999999887764                              123445556667777654         4556


Q ss_pred             eEEEEecccHHHHHHHHHHHHCCcEEeecCC---CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        206 WCLILLSITYYLYRYTRRMKEAKIIVANEGE---YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       206 ~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      +++.+ +   ...++.+.|.++||++.++..   ..+.+|++.   .++++.+.+++.|+++.
T Consensus       306 ~~~~~-~---~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~---~~~~~~~~l~~al~~~~  361 (364)
T PRK04781        306 LLVRF-D---DAEAAFQALLAAGVVVRDQRAAPRLSDALRITL---GTPEQNDRVLAALQRTQ  361 (364)
T ss_pred             EEEEc-C---CHHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeC---CCHHHHHHHHHHHHHHH
Confidence            66665 2   246788899999999998643   246899963   37899999999987754

>KOG0259|consensus

Probab=99.34  E-value=7e-11  Score=105.15  Aligned_cols=188  Identities=14%  Similarity=0.123  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHhcCCC-eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-CCC
Q psy11784         75 KYAQAARNIMEAHRDN-IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAV  152 (284)
Q Consensus        75 ~~~~~l~~~i~~~~~~-vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-g~~  152 (284)
                      -.++.+|.+++   ++ +|.||+.|-.-.|  .+++.+.|++|.++|+++|+++|.||||.-+-.-++.+.....+ .+.
T Consensus       187 IDL~~veal~D---ENT~AivviNP~NPcG--nVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiV  261 (447)
T KOG0259|consen  187 IDLDGVEALAD---ENTVAIVVINPNNPCG--NVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIV  261 (447)
T ss_pred             echHHHHHhhc---cCeeEEEEeCCCCCCc--ccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccC
Confidence            33788888887   34 6777788854433  36799999999999999999999999997442223323333333 345


Q ss_pred             CcEEE--eccccc-CCcceeEEEecHH--------HHHhchh-------------------------------hhhHHHH
Q psy11784        153 PDIIT--VGKPMG-NGMPIGAVITSRK--------IAESLNC-------------------------------LDDNRPS  190 (284)
Q Consensus       153 pDiv~--~sK~l~-~G~p~gav~~~~~--------i~~~~~~-------------------------------l~~~~~~  190 (284)
                      |-+.+  +||+-= -||++||++..+.        +.+.+..                               ++-++.+
T Consensus       262 PVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~n  341 (447)
T KOG0259|consen  262 PVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSN  341 (447)
T ss_pred             ceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhh
Confidence            64432  456554 5899999987531        2222222                               2345566


Q ss_pred             HHHHHHHHHhc---------cCce-eEEEEe----cccHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEEcCCCCCHHH
Q psy11784        191 GKYLVRPLGIN---------LHIF-WCLILL----SITYYLYRYTRRMK-EAKIIVANEGEY--GNVLLFLPAMCLTTEN  253 (284)
Q Consensus       191 ~~~l~~~L~~~---------~G~~-~~i~~~----~~~~~~~~~~~~l~-~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~  253 (284)
                      .+.-.+.|+++         .|.| ..+.+.    ++-++...|++.|. |+.+++.|+..+  .|++|+.  ++...+.
T Consensus       342 a~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~  419 (447)
T KOG0259|consen  342 ADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEEM  419 (447)
T ss_pred             HHHHHHHHhcCCCcccCcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEE--EccChHH
Confidence            66666777776         2332 233332    23334566787776 779999988664  4899995  7788999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11784        254 VLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       254 id~~~~~l~~~l~~~~  269 (284)
                      ++++++||+++..+-.
T Consensus       420 leea~~Rik~Fc~RH~  435 (447)
T KOG0259|consen  420 LEEAFSRIKEFCDRHS  435 (447)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999997754

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.34  E-value=1.5e-10  Score=107.82  Aligned_cols=175  Identities=13%  Similarity=0.117  Sum_probs=116.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++..+++..|...+    +++|.++|++||+++++|++|+ +|..     ..+..+..+|++
T Consensus       132 ~~~l~~~l~---~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~-----~~~~~~~~~D~~  198 (402)
T TIGR02006       132 LEELKAAIR---DDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI-----PINVNELKVDLM  198 (402)
T ss_pred             HHHHHHhcC---CCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc-----ccCccccCCCEE
Confidence            566776664   45788889999998998887    9999999999999999999996 4322     222234578999


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhch-------------h-------------------------hhhHHHHHHHHHH
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESLN-------------C-------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~~-------------~-------------------------l~~~~~~~~~l~~  196 (284)
                      ++|  |.++ ...+|+++.+++....+.             .                         .++.+++.+++++
T Consensus       199 ~~s~~K~~g-p~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~  277 (402)
T TIGR02006       199 SISGHKIYG-PKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLN  277 (402)
T ss_pred             EEehhhhcC-CCceEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            998  9654 335888888764322111             0                         1256667777777


Q ss_pred             HHHhccCce------------eEEEEecccHHHHHHHHHHHHCCcEEeecCC---------------------CCCEEEE
Q psy11784        197 PLGINLHIF------------WCLILLSITYYLYRYTRRMKEAKIIVANEGE---------------------YGNVLLF  243 (284)
Q Consensus       197 ~L~~~~G~~------------~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------~~~~lr~  243 (284)
                      .|+++.+..            +.+.+..  .....+...+  +|+.++.+..                     ..+.+|+
T Consensus       278 ~l~~~~~v~~~~~~~~~~p~~~~v~f~~--~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~  353 (402)
T TIGR02006       278 GIKSIEEVYLNGDLEHRVPGNLNVSFNY--VEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRF  353 (402)
T ss_pred             HHhcCCCEEEeCCccccCCCeEEEEEeC--cCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEE
Confidence            776641110            1122211  1223444443  3655442210                     1368999


Q ss_pred             EcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        244 LPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       244 ~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      ++....|++|||++++.|.++++.+.
T Consensus       354 S~~~~~t~edid~l~~~l~~~~~~~~  379 (402)
T TIGR02006       354 TIGRFTTEEEIDYAVKLVKSAIDKLR  379 (402)
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.34  E-value=5.5e-11  Score=110.94  Aligned_cols=170  Identities=14%  Similarity=0.132  Sum_probs=112.1

Q ss_pred             CeeEEEE-cceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc----EEEeccccc-
Q psy11784         90 NIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD----IITVGKPMG-  163 (284)
Q Consensus        90 ~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD----iv~~sK~l~-  163 (284)
                      ++.+|++ .| ++-.|. ..+.+-+++|.++|++||+++|.||+|..|-..+...-......-.++    +-+|||.++ 
T Consensus       176 ~~k~i~l~nP-~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~  253 (409)
T PRK07590        176 KVDIIYLCFP-NNPTGT-VLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGF  253 (409)
T ss_pred             CceEEEEeCC-CCCcCC-cCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCC
Confidence            4555655 44 555665 568999999999999999999999999877332320111111111122    236899997 


Q ss_pred             CCcceeEEEecHHHHHhc------------h--------h------------------------hhhHHHHHHHHHHHHH
Q psy11784        164 NGMPIGAVITSRKIAESL------------N--------C------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       164 ~G~p~gav~~~~~i~~~~------------~--------~------------------------l~~~~~~~~~l~~~L~  199 (284)
                      .|+++|++++++++++.+            .        .                        .+.++++.+++.+.|+
T Consensus       254 pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~  333 (409)
T PRK07590        254 TGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLE  333 (409)
T ss_pred             cCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999998887611            0        0                        1133444555666665


Q ss_pred             hc--------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        200 IN--------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       200 ~~--------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      +.        .|+++++.+. ......++++.++ ++||++.|+..+    .+.+|++  +..+++++++++++|.++
T Consensus       334 ~~~~~~~~~~g~~f~wi~~~-~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~~l~rl~~~  408 (409)
T PRK07590        334 SAGFEVYGGVNAPYIWVKTP-DGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--AFGSRENVLEAMERIKKA  408 (409)
T ss_pred             hcCCceecCCcceEEEEECC-CCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--ccCCHHHHHHHHHHHHhh
Confidence            53        3446666663 3234567887776 569999987432    3589996  456899999999999765

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.33  E-value=1.7e-10  Score=108.38  Aligned_cols=180  Identities=9%  Similarity=0.098  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC-CCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG-AVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g-~~pDi  155 (284)
                      .+++++++....   ..|++-..... +...+    +++|+++|++||++|++|++|+ +|-.|-..+..+... -..|+
T Consensus       209 ~d~l~~~~~~~~---plvii~g~S~~-~~~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D~  279 (493)
T PRK13580        209 YDEIAALAREFK---PLILVAGYSAY-PRRVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHADI  279 (493)
T ss_pred             HHHHHHHHhhcC---CEEEEeCcccc-CCCcC----HHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCcE
Confidence            577888776332   33444444333 33455    9999999999999999999997 333331111111111 14677


Q ss_pred             E--EecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        156 I--TVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       156 v--~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      +  |++|++.|.. .|++++++++.+.+..                                .+++.++.++|++.|++.
T Consensus       280 vtgT~hKaL~GP~-GG~I~~~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~  358 (493)
T PRK13580        280 VTTTTHKTLRGPR-GGLVLAKKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR  358 (493)
T ss_pred             EEeCChhhccCCC-eEEEEecHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            6  5679996421 3788888888877632                                236667888888888874


Q ss_pred             cC----------ceeEEEEecccHH-HHHHHHHHHHCCcEEeecC----C-C---CCEEEEEcCC----CCCHHHHHHHH
Q psy11784        202 LH----------IFWCLILLSITYY-LYRYTRRMKEAKIIVANEG----E-Y---GNVLLFLPAM----CLTTENVLFIV  258 (284)
Q Consensus       202 ~G----------~~~~i~~~~~~~~-~~~~~~~l~~~Gv~~~~~~----~-~---~~~lr~~p~l----~~t~~~id~~~  258 (284)
                       |          .++.+.+ ++... ...+.+.|.++||++.+..    + +   ...||+.++.    .++++|+++++
T Consensus       359 -G~~vv~ggTdshIV~V~l-g~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~ia  436 (493)
T PRK13580        359 -GARLVTGGTDNHLVLIDV-TSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVA  436 (493)
T ss_pred             -CCCccCCCCCCCEEEEEe-CCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHH
Confidence             3          2334444 33333 3467778999999997431    1 1   4689999988    55799999999


Q ss_pred             HHHHHHHHHH
Q psy11784        259 STLNRIFTSL  268 (284)
Q Consensus       259 ~~l~~~l~~~  268 (284)
                      +.|.++++..
T Consensus       437 d~l~~~l~~~  446 (493)
T PRK13580        437 ELIVKVLSNT  446 (493)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.32  E-value=1e-10  Score=108.50  Aligned_cols=168  Identities=17%  Similarity=0.186  Sum_probs=114.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++.+|+++-+.+..|.+.+    +++|.++|++||+++|+||+|+ .| .+.  ....  ...+|++
T Consensus       146 ~~~l~~~i~---~~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~-~~~--~~~~--~~~~d~~  212 (397)
T TIGR01976       146 PDDLASLLS---PRTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-AP-HGL--IDVQ--ATGADFL  212 (397)
T ss_pred             HHHHHHhcC---CCceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-cc-ccC--CCHH--HcCCCEE
Confidence            566776664   45788888888888898877    9999999999999999999996 32 121  2222  2346776


Q ss_pred             --EecccccCCcceeEEEecHHHHHhchh------------------------------hhh------------------
Q psy11784        157 --TVGKPMGNGMPIGAVITSRKIAESLNC------------------------------LDD------------------  186 (284)
Q Consensus       157 --~~sK~l~~G~p~gav~~~~~i~~~~~~------------------------------l~~------------------  186 (284)
                        +++|.+|  .++|++++++++++.+..                              ++.                  
T Consensus       213 ~~s~~K~~g--~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~  290 (397)
T TIGR01976       213 TCSAYKFFG--PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVA  290 (397)
T ss_pred             EEechhhcC--CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhH
Confidence              4569874  568999999988765432                              111                  


Q ss_pred             --------HHHHHHHHHHHHHhccCc-------------eeEEEEecccHHHHHHHHHHHHCCcEEeecC----------
Q psy11784        187 --------NRPSGKYLVRPLGINLHI-------------FWCLILLSITYYLYRYTRRMKEAKIIVANEG----------  235 (284)
Q Consensus       187 --------~~~~~~~l~~~L~~~~G~-------------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------  235 (284)
                              ..+..+++++.|+++.++             ++.+.+  .......+.+.|.++||++..+.          
T Consensus       291 ~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~  368 (397)
T TIGR01976       291 SFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTV--HGLPPQRVVRRLADQGIDAWAGHFYAVRLLRRL  368 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEe--CCcCHHHHHHHHHHCCeEEEeCccchHHHHHHh
Confidence                    122455555666553111             111111  12245679999999999998651          


Q ss_pred             ---CCCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        236 ---EYGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       236 ---~~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                         ...+.+|+++...+|++|++++++.|
T Consensus       369 ~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       369 GLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             CCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence               12468999999999999999999864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.32  E-value=3.3e-10  Score=104.63  Aligned_cols=178  Identities=13%  Similarity=0.121  Sum_probs=117.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +++.+|++..+.+..|.+.+    +++|.++|++||+++++|++|+ +|..     ........+|++
T Consensus       130 ~~~l~~~i~---~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~-----~~~~~~~~~D~~  196 (382)
T TIGR03403       130 AEQVREAIT---EKTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI-----PVDVQKAGVDFL  196 (382)
T ss_pred             HHHHHHhcc---cCCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC-----ccCccccCCCEE
Confidence            566776664   34677888888888898887    8999999999999999999986 3311     112223457888


Q ss_pred             Eec--ccccCCcceeEEEecHHHH--Hhc---------hh-------------------------hhhHHHHHHHHHHHH
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIA--ESL---------NC-------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~--~~~---------~~-------------------------l~~~~~~~~~l~~~L  198 (284)
                      ++|  |.+|. -.+|++..++...  ..+         ..                         .++.++..+++.+.|
T Consensus       197 ~~s~~K~~gp-~G~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L  275 (382)
T TIGR03403       197 SFSAHKFHGP-KGVGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDAL  275 (382)
T ss_pred             EEcchhhCCC-CceEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            887  96431 1256665543320  000         00                         124555667777777


Q ss_pred             HhccC------------ceeEEEEecccHHHHHHHHHHHHCCcEEeecCC---------------------CCCEEEEEc
Q psy11784        199 GINLH------------IFWCLILLSITYYLYRYTRRMKEAKIIVANEGE---------------------YGNVLLFLP  245 (284)
Q Consensus       199 ~~~~G------------~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------~~~~lr~~p  245 (284)
                      +++.|            .++.+.+.  ......+.+.|.++||.++.+..                     ..+.+|+++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~  353 (382)
T TIGR03403       276 LELPDVFVVGDREHRVPNTILISIK--GVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSL  353 (382)
T ss_pred             hcCCCEEEECCCCCCcCCEEEEEeC--CCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEEC
Confidence            65411            12223321  12355677778899999985310                     125799999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        246 AMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       246 ~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      ....|++|||++++.|+++++++..
T Consensus       354 ~~~~t~~did~~~~~l~~~~~~~~~  378 (382)
T TIGR03403       354 SRFTTEEEIDYTIEVFKKAVQRLRA  378 (382)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999887653

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.32  E-value=8.3e-10  Score=103.15  Aligned_cols=177  Identities=14%  Similarity=0.165  Sum_probs=110.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEE-cceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++++.+...  ++.+|++ .+..   |...+    +++|.++|++||+++|+||+|. +|..+.+... ...+ ..|+
T Consensus       154 ~~~l~~~i~~~--~~k~v~~~~~~~---~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~-~~~~-~~di  221 (416)
T PRK00011        154 YDEVEKLALEH--KPKLIIAGASAY---SRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHP-SPVP-HADV  221 (416)
T ss_pred             HHHHHHHHHhc--CCCEEEECCCcC---CCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccC-CCCC-CCcE
Confidence            57788877632  3445555 4433   33333    8999999999999999999985 2222210001 1112 3576


Q ss_pred             E--EecccccCCcceeEEEec-HHHHHhchh---------------------------------hhhHHHHHHHHHHHHH
Q psy11784        156 I--TVGKPMGNGMPIGAVITS-RKIAESLNC---------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       156 v--~~sK~l~~G~p~gav~~~-~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~  199 (284)
                      +  +++|+++ |.+.|+++++ +++.+.+..                                 .++.+++.+++++.|+
T Consensus       222 ~~~S~~K~l~-g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~  300 (416)
T PRK00011        222 VTTTTHKTLR-GPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALA  300 (416)
T ss_pred             EEecCCcCCC-CCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            5  5679994 4677899985 677766543                                 1244555667777776


Q ss_pred             hccCc----------eeEEEEecccHHHHHHHHHHHHCCcEEeecC-------C-CCCEEEEEcC----CCCCHHHHHHH
Q psy11784        200 INLHI----------FWCLILLSITYYLYRYTRRMKEAKIIVANEG-------E-YGNVLLFLPA----MCLTTENVLFI  257 (284)
Q Consensus       200 ~~~G~----------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~-~~~~lr~~p~----l~~t~~~id~~  257 (284)
                      ++ |+          ++.+.+.+.......+.+.|.++||.+....       + ..+.+|+...    ..+|++|++++
T Consensus       301 ~~-g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l  379 (416)
T PRK00011        301 ER-GFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEI  379 (416)
T ss_pred             hC-CCeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHH
Confidence            63 32          2223331111145678888899999997321       1 2346888432    35789999999


Q ss_pred             HHHHHHHHHH
Q psy11784        258 VSTLNRIFTS  267 (284)
Q Consensus       258 ~~~l~~~l~~  267 (284)
                      ++.|++++..
T Consensus       380 ~~~l~~~~~~  389 (416)
T PRK00011        380 AELIADVLDN  389 (416)
T ss_pred             HHHHHHHHhc
Confidence            9999998765

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.32  E-value=5.4e-10  Score=102.44  Aligned_cols=178  Identities=17%  Similarity=0.122  Sum_probs=113.5

Q ss_pred             HHHHHHHHHhc----CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         77 AQAARNIMEAH----RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~----~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                      .+++++.++..    ..++.+|++....+..|...+    +++|.++|++||+++|+||+|. +|...   +....++..
T Consensus       122 ~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~---~~~~~~~~d  193 (361)
T cd06452         122 PEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRMP---VSGKELGAD  193 (361)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCcC---CCHHHcCCC
Confidence            56677766522    135777777766666776655    8999999999999999999996 33221   222233432


Q ss_pred             CcEEEecccccCCcceeEEEecHHHHHhchh----------------------------hh----------hHHHHHHHH
Q psy11784        153 PDIITVGKPMGNGMPIGAVITSRKIAESLNC----------------------------LD----------DNRPSGKYL  194 (284)
Q Consensus       153 pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~----------------------------l~----------~~~~~~~~l  194 (284)
                      -.+.+++|+++++.++|++++++++++.+..                            ++          +..++.+++
T Consensus       194 ~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l  273 (361)
T cd06452         194 FIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWF  273 (361)
T ss_pred             EEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2334678999877789999999888776421                            11          111233566


Q ss_pred             HHHHHhccCcee-----------EEEEecc--------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHH
Q psy11784        195 VRPLGINLHIFW-----------CLILLSI--------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       195 ~~~L~~~~G~~~-----------~i~~~~~--------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id  255 (284)
                      .+.|+++.|+-+           .++. +.        .....++.+.|+++||+....+ .++.+|+.. +.+|+++++
T Consensus       274 ~~~L~~l~g~~v~~~~~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~-~~~~~ri~~-~g~~~e~~~  350 (361)
T cd06452         274 VAELEKIEGIKQLGEKPKNHDLMFFET-PSFDEIAKKHKRRGYFLYSELKKRGIHGIKPG-LTRYFKLST-YGLTWEQVE  350 (361)
T ss_pred             HHHHhcCCCeEEECCCCCCCceEEEEc-CCcchhhhhccccchhHHHHHHHcCceEEcCC-CceEEEEEe-cCCCHHHHH
Confidence            666665424321           1111 10        1112368899999999965332 235788875 447999999


Q ss_pred             HHHHHHHHHH
Q psy11784        256 FIVSTLNRIF  265 (284)
Q Consensus       256 ~~~~~l~~~l  265 (284)
                      .+++.|+++.
T Consensus       351 ~l~~al~~~~  360 (361)
T cd06452         351 YVVDAFKEIA  360 (361)
T ss_pred             HHHHHHHHHh
Confidence            9999998653

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.32  E-value=3.1e-11  Score=111.00  Aligned_cols=179  Identities=15%  Similarity=0.081  Sum_probs=119.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI-  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi-  155 (284)
                      ++++++.++   +++.+|++...++..|.+ .+.+.+++|.++|++++ ++|+||+|..|-..+...-......-.+.+ 
T Consensus       141 ~~~l~~~~~---~~~~~v~i~~P~NPTG~~-~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi  215 (366)
T PRK01533        141 LDEISSVVD---NDTKIVWICNPNNPTGTY-VNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNIL  215 (366)
T ss_pred             HHHHHHHhC---cCCcEEEEeCCCCCCCCC-cCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEE
Confidence            566776664   234455554436667765 47888999999998877 577799998763222100011111112333 


Q ss_pred             --EEeccccc-CCcceeEEEecHHHHHhchh------------------------h----hhHHHHHHHHHHHHHhc---
Q psy11784        156 --ITVGKPMG-NGMPIGAVITSRKIAESLNC------------------------L----DDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       156 --v~~sK~l~-~G~p~gav~~~~~i~~~~~~------------------------l----~~~~~~~~~l~~~L~~~---  201 (284)
                        -+|||.++ .|+++|++++++++++.+..                        +    +..++..+++.+.++.+   
T Consensus       216 ~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~g~~  295 (366)
T PRK01533        216 VLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENEIP  295 (366)
T ss_pred             EEeCchHHhcChHHHHhHHhCCHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence              36899998 79999999999999887754                        1    12233344444555443   


Q ss_pred             ----cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        202 ----LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       202 ----~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                          .|.++++.+ +   ....+.+.|+++||++++   +.+.+|++   .-+.++.+.++++|+++++....
T Consensus       296 ~~~~~~nf~~~~~-~---~~~~~~~~l~~~GI~Vr~---~~~~iRis---~~~~~~~~~l~~al~~~~~~~~~  358 (366)
T PRK01533        296 FYQSQTNFIFLPV-E---NGGEIYEACAHAGFIIRP---FPNGVRIT---VGTREQNEGVISVLQQHFENKKR  358 (366)
T ss_pred             cCCCcCcEEEEeC-C---CHHHHHHHHHHCCcEEcc---CCCceEEe---CCCHHHHHHHHHHHHHHHHhccc
Confidence                455666665 3   246789999999999996   35789996   56899999999999998876543

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.31  E-value=7.9e-11  Score=109.61  Aligned_cols=171  Identities=12%  Similarity=0.164  Sum_probs=112.3

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccCC---CCcEEEeccccc-C
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQGA---VPDIITVGKPMG-N  164 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g~---~pDiv~~sK~l~-~  164 (284)
                      ++.+|++-.-++-.|. ..+.+.+++|.++|++||+++|.||+|..|-..+...... ...+.   .-.+-+|||.++ .
T Consensus       173 ~~~~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~p  251 (402)
T TIGR03542       173 KIDIIYLCSPNNPTGT-VLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFT  251 (402)
T ss_pred             CceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCC
Confidence            4566665444555665 6689999999999999999999999999773322101111 11111   122347899997 7


Q ss_pred             CcceeEEEecHHHH--------Hhchh--------------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        165 GMPIGAVITSRKIA--------ESLNC--------------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       165 G~p~gav~~~~~i~--------~~~~~--------------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      |+++|+++++++++        ..+..                                .+.++++.+++.+.|++.   
T Consensus       252 GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  331 (402)
T TIGR03542       252 GVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAGFK  331 (402)
T ss_pred             CcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence            99999999988765        22100                                112334445566666543   


Q ss_pred             -----cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        202 -----LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       202 -----~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                           .|.++++.+ +......++++.|+ ++||++.++..+    .+++|++  +..+++++++++++|.++
T Consensus       332 ~~~~~~~~f~~v~l-~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       332 VYGGEHAPYLWVKT-PEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFS--AFGKRENIVEACERIKEA  401 (402)
T ss_pred             ecCCCceeEEEEEC-CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHhh
Confidence                 234666666 33234567888877 569999987432    3689997  445899999999999765

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.31  E-value=1.2e-10  Score=107.25  Aligned_cols=171  Identities=13%  Similarity=0.146  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++   +++.+|++|.+.+..|.+.+    +++|.++|++||+++|+|+++... ..      .......+|++
T Consensus       115 ~~~l~~~i~---~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~~-~~------~~~~~~g~Div  180 (369)
T cd00614         115 PEALEAAIK---PETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFATP-YL------QRPLELGADIV  180 (369)
T ss_pred             HHHHHHhcC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcch-hc------CChhhhCCcEE
Confidence            456666664   36889999999999898877    999999999999999999998521 11      11122346877


Q ss_pred             --EecccccC-C-cceeEEEecH-HHHHhchh---------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 --TVGKPMGN-G-MPIGAVITSR-KIAESLNC---------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 --~~sK~l~~-G-~p~gav~~~~-~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                        +++|.++| | ...|++++++ ++++.+..                           +++..++.+++.+.|++.   
T Consensus       181 v~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r~~~~~~na~~la~~L~~~~~v  260 (369)
T cd00614         181 VHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRMERHSENALKVAEFLEKHPKV  260 (369)
T ss_pred             EeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence              67899986 4 6789999977 77665543                           335566677777777754   


Q ss_pred             -----------------------cCceeEEEEecccHHHHHHHHHHHHC--Cc--------EEeec--------------
Q psy11784        202 -----------------------LHIFWCLILLSITYYLYRYTRRMKEA--KI--------IVANE--------------  234 (284)
Q Consensus       202 -----------------------~G~~~~i~~~~~~~~~~~~~~~l~~~--Gv--------~~~~~--------------  234 (284)
                                             .|.++.+++.+..+.+.+|++.|.--  |.        +..|.              
T Consensus       261 ~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~  340 (369)
T cd00614         261 ERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAA  340 (369)
T ss_pred             cEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCceeeeCCcccccccCCHHHHHh
Confidence                                   25567777743334555666555421  11        11110              


Q ss_pred             -CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        235 -GEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       235 -~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                       +...+.+|++.-+    |+.+.+++-|++++
T Consensus       341 ~g~~~~liR~svGl----E~~~dl~~dl~~al  368 (369)
T cd00614         341 AGITPGLVRLSVGI----EDVEDLIADLEQAL  368 (369)
T ss_pred             cCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence             1113577875444    67777887777765

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.31  E-value=2.3e-10  Score=104.10  Aligned_cols=169  Identities=19%  Similarity=0.160  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++++++.+.   +++++|++..+   .|...+    +++|+++|++||+++|+|++|+ +|...    .....+...|+.
T Consensus        96 ~~~l~~~i~---~~~~~v~~~~~---~G~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~~----~~~~~~~~~d~~  160 (352)
T cd00616          96 PELIEAAIT---PRTKAIIPVHL---YGNPAD----MDAIMAIAKRHGLPVIEDAAQA-LGATY----KGRKVGTFGDAG  160 (352)
T ss_pred             HHHHHHhcC---cCCeEEEEECC---CCCcCC----HHHHHHHHHHcCCeEEEECCCC-CCCeE----CCEEcccCccee
Confidence            566776663   45777877654   454444    8999999999999999999997 33221    111233346777


Q ss_pred             Eec----ccccCCcceeEEEec-HHHHHhchh------------------------------------------hhhHHH
Q psy11784        157 TVG----KPMGNGMPIGAVITS-RKIAESLNC------------------------------------------LDDNRP  189 (284)
Q Consensus       157 ~~s----K~l~~G~p~gav~~~-~~i~~~~~~------------------------------------------l~~~~~  189 (284)
                      ++|    |++++| +.|+++++ +++.+.+..                                          .++.++
T Consensus       161 ~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~  239 (352)
T cd00616         161 AFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRRE  239 (352)
T ss_pred             EEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHH
Confidence            776    999644 45667765 455432210                                          235556


Q ss_pred             HHHHHHHHHHhccCc--------------eeEEEEecc--cHHHHHHHHHHHHCCcEEeecCC-----------------
Q psy11784        190 SGKYLVRPLGINLHI--------------FWCLILLSI--TYYLYRYTRRMKEAKIIVANEGE-----------------  236 (284)
Q Consensus       190 ~~~~l~~~L~~~~G~--------------~~~i~~~~~--~~~~~~~~~~l~~~Gv~~~~~~~-----------------  236 (284)
                      +.+++++.|+++.|+              ++.+.+ +.  ......+.+.|.++||.+....+                 
T Consensus       240 ~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~  318 (352)
T cd00616         240 IAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRL-DPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPG  318 (352)
T ss_pred             HHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEE-CCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcC
Confidence            677777777764111              222222 22  34677899999999997652110                 


Q ss_pred             -C-------CCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        237 -Y-------GNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       237 -~-------~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                       .       .+.+|+.+....|++|++.++++|+
T Consensus       319 ~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         319 DLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             CChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence             0       1579998888899999999998873

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.31  E-value=1.1e-10  Score=106.65  Aligned_cols=175  Identities=19%  Similarity=0.261  Sum_probs=120.6

Q ss_pred             HHHHHHHHHhcCCCeeE-EEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc-
Q psy11784         77 AQAARNIMEAHRDNIAT-LICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD-  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaa-vi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD-  154 (284)
                      ++.+.+.+.   +++.. +|..|-.= .|. ..+.+.++++.+.|.+ +.+||+||++.-|..  .  -+..... .++ 
T Consensus       135 ~~~~~~~~~---~~~~lv~i~nPNNP-TG~-~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~--~--~~~~l~~-~~~n  203 (356)
T COG0079         135 LDAILAAIR---DKTKLVFLCNPNNP-TGT-LLPREELRALLEALPE-GGLVVIDEAYIEFSP--E--SSLELLK-YPPN  203 (356)
T ss_pred             HHHHHHhhh---cCCCEEEEeCCCCC-CCC-CCCHHHHHHHHHhCCC-CcEEEEeCchhhcCC--c--hhhhhcc-CCCC
Confidence            344444443   34444 45556433 454 3467778888888888 999999999998854  2  1222222 344 


Q ss_pred             EE---Eeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        155 II---TVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       155 iv---~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      ++   ||||++| .|+++|++++++++++.+..                            .+++.+..+++.+.|+.+ 
T Consensus       204 livlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~  283 (356)
T COG0079         204 LIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG  283 (356)
T ss_pred             EEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            43   8999999 68999999999999998876                            235666677777777763 


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC---CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE---YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                             .+-|+.+.+ +... +..+.+.|+++||+++.+..   ..+++|++   +-|++|-+.++++|.++++.
T Consensus       284 ~~~v~pS~aNFvlv~~-~~~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~~ll~AL~~~~~~  354 (356)
T COG0079         284 LFGVFPSQANFVLVRV-PDAE-AAALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEENDRLLAALREVLKG  354 (356)
T ss_pred             CCeecCCCCcEEEEEC-CCcc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHHHHHHHHHHHHhc
Confidence                   122333333 3334 66899999999999998743   34699996   56889999999999888754

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.31  E-value=5.6e-10  Score=103.72  Aligned_cols=177  Identities=15%  Similarity=0.155  Sum_probs=111.1

Q ss_pred             HHHHHHHHHhcCCCeeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccc-ccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQ-CGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+++++.+...  ++.+|+ ..|..   |...+    +++|.++|++||+++|+||+| .|+...|. . .. ... ..|
T Consensus       150 ~~~l~~~i~~~--~~~~v~~~~~~~---~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~-~-~~-~~~-~~d  216 (402)
T cd00378         150 YDALEKMALEF--KPKLIVAGASAY---PRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGV-F-PN-PLP-GAD  216 (402)
T ss_pred             HHHHHHHHHhC--CCCEEEecCccc---CCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhccc-C-CC-ccc-CCc
Confidence            57777777532  333444 46643   33333    899999999999999999997 34422232 1 11 111 357


Q ss_pred             EE--EecccccCCcceeEEEecH-HHHHhchh---------------------------------hhhHHHHHHHHHHHH
Q psy11784        155 II--TVGKPMGNGMPIGAVITSR-KIAESLNC---------------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       155 iv--~~sK~l~~G~p~gav~~~~-~i~~~~~~---------------------------------l~~~~~~~~~l~~~L  198 (284)
                      ++  +++|++ +|.+.|++++++ ++++.+..                                 .+++.++.+++.+.|
T Consensus       217 v~~~s~sK~l-~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  295 (402)
T cd00378         217 VVTTTTHKTL-RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEAL  295 (402)
T ss_pred             EEEeccccCC-CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            65  568999 557789999876 77665533                                 123445555666666


Q ss_pred             Hhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeec----C----CCCCEEEEEcCCC----CCHHHHHHH
Q psy11784        199 GIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANE----G----EYGNVLLFLPAMC----LTTENVLFI  257 (284)
Q Consensus       199 ~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~----~----~~~~~lr~~p~l~----~t~~~id~~  257 (284)
                      ++.         .+.++++.+.+.......+.+.|.++||.+.+.    .    ...+.+|+.++..    ++++|++++
T Consensus       296 ~~~g~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~  375 (402)
T cd00378         296 KERGFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEI  375 (402)
T ss_pred             HhCCCeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHH
Confidence            653         122334444211223456777788899999642    1    1346899977664    479999999


Q ss_pred             HHHHHHHHHH
Q psy11784        258 VSTLNRIFTS  267 (284)
Q Consensus       258 ~~~l~~~l~~  267 (284)
                      ++.|.+++++
T Consensus       376 ~~~l~~~~~~  385 (402)
T cd00378         376 ADFIARALKD  385 (402)
T ss_pred             HHHHHHHHhc
Confidence            9999987754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>KOG1368|consensus

Probab=99.31  E-value=2.9e-10  Score=98.38  Aligned_cols=242  Identities=16%  Similarity=0.183  Sum_probs=155.1

Q ss_pred             HHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCC---Cc------cc---cc-CCC--CCceEEccCCCCcCCCCCCC
Q psy11784          4 NDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISP---RA------FM---LS-SEK--KPWVHVIPFPDTYRGEFSAD   68 (284)
Q Consensus         4 ~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~---~~------~~---~~-~~~--~~~~~~~~~~~~~~~~~~~~   68 (284)
                      ++.=.+.|+.+ ||.--+...+|-.|+....+.-..   +.      ..   .. ++.  ...++..|.-+.     +++
T Consensus        59 ~rLE~~vA~l~-GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e-----~dg  132 (384)
T KOG1368|consen   59 NRLEQRVAELF-GKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNE-----NDG  132 (384)
T ss_pred             HHHHHHHHHHh-CccceeeecccccccHHHHHHHhcCCCceEEeccchheeehhccChhhhccceeEeeeeC-----CCC
Confidence            44444556665 888888888999998877664321   11      00   00 111  122222221110     110


Q ss_pred             chHHHHHHHHHHHHHHHhcC-----CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcc
Q psy11784         69 DPQAAQKYAQAARNIMEAHR-----DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHF  143 (284)
Q Consensus        69 ~~~~~~~~~~~l~~~i~~~~-----~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~  143 (284)
                           .-.++++|+.+....     +....|.+|-.+...|..+.|-+|+.++.+||++||+-|.+|-+     |.   |
T Consensus       133 -----tm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGA-----Ri---~  199 (384)
T KOG1368|consen  133 -----TMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGA-----RI---F  199 (384)
T ss_pred             -----eeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchh-----hh---h
Confidence                 111788999887332     23789999999988888889999999999999999999999943     21   2


Q ss_pred             ccccccCC-------CCcE--EEecccccCCcceeE-EEecHHHHHhchh-----------------------------h
Q psy11784        144 WAFQTQGA-------VPDI--ITVGKPMGNGMPIGA-VITSRKIAESLNC-----------------------------L  184 (284)
Q Consensus       144 ~a~~~~g~-------~pDi--v~~sK~l~~G~p~ga-v~~~~~i~~~~~~-----------------------------l  184 (284)
                      -+.-..|+       ..|-  +||||+||.  |+|. ++++++.++....                             +
T Consensus       200 NAavasgV~vk~i~~~fDSVsiCLSKglgA--PVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~~~~L  277 (384)
T KOG1368|consen  200 NAAVASGVPVKKICSAFDSVSICLSKGLGA--PVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDENVPLL  277 (384)
T ss_pred             hHHHHcCCCHHHHHHhhhhhhhhhhccCCC--CcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcchHHH
Confidence            23333333       2343  599999986  5555 4567877765332                             3


Q ss_pred             hhHHHHHHHHHHHHHhcc----------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHH
Q psy11784        185 DDNRPSGKYLVRPLGINL----------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENV  254 (284)
Q Consensus       185 ~~~~~~~~~l~~~L~~~~----------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~i  254 (284)
                      +..+++...+.+.++...          --|..+++....-.+..+++.+.++|+++.++.  ..++|+.....+|++++
T Consensus       278 ~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~--s~r~Rivlh~Qvt~~~v  355 (384)
T KOG1368|consen  278 RADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILLMGGA--SRRIRIVLHHQVTDEDV  355 (384)
T ss_pred             HHHHHHHHHHHHHhccccceeeecchhhcceeeeecccccCCHHHHHHHHHHCCeEEeecc--ccceEEEEEEecCHHHH
Confidence            355566666666666531          112333332334467899999999999998643  45789999999999999


Q ss_pred             HHHHHHHH-HHHHHH
Q psy11784        255 LFIVSTLN-RIFTSL  268 (284)
Q Consensus       255 d~~~~~l~-~~l~~~  268 (284)
                      +..+..+. .++...
T Consensus       356 e~~~~~~~k~~~~q~  370 (384)
T KOG1368|consen  356 EYVKSVLSKKFLKQL  370 (384)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            99999994 444443

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.31  E-value=8.6e-10  Score=102.68  Aligned_cols=181  Identities=9%  Similarity=0.062  Sum_probs=125.7

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHH--HHHhCCEEEEecccccCccccCccccccccCCCC
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDY--IHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l--~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                      .+++++.++... +++.+|++-......|.+.+    +++|.++  |+++|+++|+|++|+ +|   .  .-.+......
T Consensus       123 ~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~g~~~vvD~v~s-~g---~--~~id~~~~~~  192 (401)
T PLN02409        123 LDILKSKLRQDTNHKIKAVCVVHNETSTGVTND----LAGVRKLLDCAQHPALLLVDGVSS-IG---A--LDFRMDEWGV  192 (401)
T ss_pred             HHHHHHHHhhCcCCCccEEEEEeecccccccCC----HHHHHHHHhhhccCcEEEEEcccc-cC---C--ccccccccCc
Confidence            577888777422 25777877766667788887    8888888  999999999999997 43   1  1222222346


Q ss_pred             cEEEe--cccccCCcceeEEEecHHHHHhch------------------------h------------------------
Q psy11784        154 DIITV--GKPMGNGMPIGAVITSRKIAESLN------------------------C------------------------  183 (284)
Q Consensus       154 Div~~--sK~l~~G~p~gav~~~~~i~~~~~------------------------~------------------------  183 (284)
                      |++++  .|++++...+|+++.+++.++.+.                        .                        
T Consensus       193 D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e  272 (401)
T PLN02409        193 DVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLE  272 (401)
T ss_pred             cEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHH
Confidence            77654  599987556899999988755421                        0                        


Q ss_pred             --hhhHHHHHHHHHHHHHhccCc-------------eeEEEEecccHHHHHHHHHHH-HCCcEEeecC-C-CCCEEEEEc
Q psy11784        184 --LDDNRPSGKYLVRPLGINLHI-------------FWCLILLSITYYLYRYTRRMK-EAKIIVANEG-E-YGNVLLFLP  245 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~~G~-------------~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-~-~~~~lr~~p  245 (284)
                        .++.+++.+++++.|+++ |+             +.++.+ +.......+.+.|. ++|+.+..+. . .+..+|+..
T Consensus       273 ~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~-p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~  350 (401)
T PLN02409        273 NVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVV-PEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGH  350 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeC-CCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcC
Confidence              125556677777777664 21             122222 33334567877776 6699998653 2 367899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        246 AMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       246 ~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      .-.++.+++..++++|++++.++-
T Consensus       351 ~g~~~~~~~~~~~~~~~~~l~~~g  374 (401)
T PLN02409        351 LGNVNELQLLGALAGVEMVLKDVG  374 (401)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcC
Confidence            888999999999999999998753

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.30  E-value=2.8e-10  Score=101.72  Aligned_cols=185  Identities=15%  Similarity=0.136  Sum_probs=125.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD--  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD--  154 (284)
                      +++||+.+.  .+.+..+|+-.-++-+| .+.+++.|.+|.+||++||+.+|.||+|+.+--.|.....+.  .+.|+  
T Consensus       147 ~~~LE~~~~--~~~vkl~iLCnPHNP~G-rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a--~ls~~~a  221 (388)
T COG1168         147 FDALEKAFV--DERVKLFILCNPHNPTG-RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFA--SLSERFA  221 (388)
T ss_pred             HHHHHHHHh--cCCccEEEEeCCCCCCC-ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchh--hcChhhh
Confidence            788998887  23355555444355444 578999999999999999999999999998755552122221  23333  


Q ss_pred             ---EEEe--ccccc-CCcceeEEEec-HHHHHhchh--------------------------------hhhHHHHHHHHH
Q psy11784        155 ---IITV--GKPMG-NGMPIGAVITS-RKIAESLNC--------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       155 ---iv~~--sK~l~-~G~p~gav~~~-~~i~~~~~~--------------------------------l~~~~~~~~~l~  195 (284)
                         +.+.  ||+++ .|+-.+.++.+ +++.+.+..                                ++-++.+.+++.
T Consensus       222 ~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~  301 (388)
T COG1168         222 DNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVA  301 (388)
T ss_pred             cceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence               3333  69998 58877877764 444333322                                335666777777


Q ss_pred             HHHHhc---------cCce-eEEEEecccHHHHHHHHHHHH-CCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHH
Q psy11784        196 RPLGIN---------LHIF-WCLILLSITYYLYRYTRRMKE-AKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVST  260 (284)
Q Consensus       196 ~~L~~~---------~G~~-~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~  260 (284)
                      +.|++.         .|.+ .++++..-.....++.+.+++ .+|.+.++..+    .+.+|+  .+..+.+-+++++++
T Consensus       302 ~~l~~~~P~v~v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~Rl--N~acpr~~L~eal~r  379 (388)
T COG1168         302 DFLNKHLPGVKVTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRL--NFACPRAILEEALER  379 (388)
T ss_pred             HHHHhhCCCcEEecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEE--ecCCCHHHHHHHHHH
Confidence            777765         4544 467775333334567777775 48888876443    368888  578899999999999


Q ss_pred             HHHHHHHH
Q psy11784        261 LNRIFTSL  268 (284)
Q Consensus       261 l~~~l~~~  268 (284)
                      |.++++.+
T Consensus       380 i~~al~~~  387 (388)
T COG1168         380 LKRALKKR  387 (388)
T ss_pred             HHHHHhcc
Confidence            99888653

>PRK05839 hypothetical protein; Provisional

Probab=99.28  E-value=1e-10  Score=107.90  Aligned_cols=169  Identities=10%  Similarity=0.060  Sum_probs=109.6

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc----C--CCCcE---EEecc
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ----G--AVPDI---ITVGK  160 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~----g--~~pDi---v~~sK  160 (284)
                      ++.+|++-.-++-.|. ..+++.+++|.++|++||+++|.||+|..|...+. ..+....    +  -.+.+   -+|||
T Consensus       155 ~~k~v~i~nP~NPTG~-~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~-~~s~~~~~~~~~~~~~~~vi~~~SfSK  232 (374)
T PRK05839        155 EVDLVILNSPNNPTGR-TLSLEELIEWVKLALKHDFILINDECYSEIYENTP-PPSLLEASILVGNESFKNVLVINSISK  232 (374)
T ss_pred             cccEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCC-CCCHhhhhcccCccccCcEEEEecccc
Confidence            3555555333555666 55899999999999999999999999987732222 1111110    0  11233   36899


Q ss_pred             ccc-CCcceeEEEecHHHHHhchh--------------------h---hhHHHHHHHHHHHHHhc----------cCcee
Q psy11784        161 PMG-NGMPIGAVITSRKIAESLNC--------------------L---DDNRPSGKYLVRPLGIN----------LHIFW  206 (284)
Q Consensus       161 ~l~-~G~p~gav~~~~~i~~~~~~--------------------l---~~~~~~~~~l~~~L~~~----------~G~~~  206 (284)
                      .++ .|+++|++++++++++.+..                    +   +.+++..+.+++..+.+          .|+++
T Consensus       233 ~~~~~GlRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~gg~fi  312 (374)
T PRK05839        233 RSSAPGLRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREILGITIPPATFYV  312 (374)
T ss_pred             ccCCccceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCCCeeEEE
Confidence            975 68999999999988876543                    0   01222222222222211          45566


Q ss_pred             EEEEecccHHHHHHHHHHHH-CCcEEeecCCC------CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        207 CLILLSITYYLYRYTRRMKE-AKIIVANEGEY------GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       207 ~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ++.+.    ...+++++|++ +||.+.|+..+      .+++|++.  ..+++++.+++++|.++++
T Consensus       313 ~~~~~----~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        313 WLPVD----NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIAL--VYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             EEeCC----ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHhh
Confidence            66663    24578888875 99999986432      37899975  4579999999999988764

>PRK09105 putative aminotransferase; Provisional

Probab=99.28  E-value=5.2e-10  Score=103.07  Aligned_cols=161  Identities=16%  Similarity=0.187  Sum_probs=108.7

Q ss_pred             EEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE---Eeccccc-CCcce
Q psy11784         93 TLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII---TVGKPMG-NGMPI  168 (284)
Q Consensus        93 avi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv---~~sK~l~-~G~p~  168 (284)
                      .++..| ++..|.. .+.+.++++.+.|+ +|+++|+||+|..|+. +.  ...+..+..++++   +|||.+| .|+++
T Consensus       169 v~l~nP-~NPTG~~-~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~-~~--s~~~~~~~~~~vi~~~SfSK~~g~~GlRi  242 (370)
T PRK09105        169 IYICNP-NNPTGTV-TPRADIEWLLANKP-AGSVLLVDEAYIHFSD-AP--SVVDLVAQRKDLIVLRTFSKLYGMAGMRL  242 (370)
T ss_pred             EEEeCC-CCCCCcC-cCHHHHHHHHHhCC-CCcEEEEECchHHhcc-Cc--chHHHHhhCCCEEEEecccHhhcCCccce
Confidence            344555 5666765 57788888888764 5999999999976642 11  1112222235544   6899998 69999


Q ss_pred             eEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc-------cCceeEEEEeccc
Q psy11784        169 GAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN-------LHIFWCLILLSIT  214 (284)
Q Consensus       169 gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~-------~G~~~~i~~~~~~  214 (284)
                      |++++++++++.+..                           .++++++.+++.+.|++.       .|.++.+.+ +  
T Consensus       243 G~~v~~~~~i~~l~~~~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~f~~~~~-~--  319 (370)
T PRK09105        243 GLAAARPDLLAKLARFGHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKKGYKCTPSQANCFMVDV-K--  319 (370)
T ss_pred             eeeecCHHHHHHHHhcCCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCcEEEEeC-C--
Confidence            999999988876543                           124555666677777664       344444444 2  


Q ss_pred             HHHHHHHHHHHHCCcEEeecC-CCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        215 YYLYRYTRRMKEAKIIVANEG-EYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       215 ~~~~~~~~~l~~~Gv~~~~~~-~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      ....++++.|.++||.+.... ...+++|++..   ++++++.+++.|++++
T Consensus       320 ~~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~  368 (370)
T PRK09105        320 RPAKAVADAMAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFAKVM  368 (370)
T ss_pred             CCHHHHHHHHHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence            245789999999999984321 13578999744   6888999998887764

>PRK10534 L-threonine aldolase; Provisional

Probab=99.27  E-value=2.3e-10  Score=103.69  Aligned_cols=175  Identities=13%  Similarity=0.210  Sum_probs=112.9

Q ss_pred             HHHHHHHHHhc---CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccc---cCccccccccC
Q psy11784         77 AQAARNIMEAH---RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRS---GSHFWAFQTQG  150 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~---G~~~~a~~~~g  150 (284)
                      ++++++.+...   ..++.+|+++.-.  .|. +.+.+.+++|.++|++||++|++||++. |+..   +. ... ....
T Consensus       113 ~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~-v~~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~-~~~-~~~~  186 (333)
T PRK10534        113 LDKVAAKIKPDDIHFARTRLLSLENTH--NGK-VLPREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGC-ELK-EITQ  186 (333)
T ss_pred             HHHHHHhhcccCcCcccceEEEEecCC--CCe-ecCHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCC-CHH-HHHh
Confidence            56676666421   0146677777422  365 4578889999999999999999999876 4322   21 110 0011


Q ss_pred             CCCc--EEEecccccCCccee-EEEecHHHHHhchh----------------------hh-------hHHHHHHHHHHHH
Q psy11784        151 AVPD--IITVGKPMGNGMPIG-AVITSRKIAESLNC----------------------LD-------DNRPSGKYLVRPL  198 (284)
Q Consensus       151 ~~pD--iv~~sK~l~~G~p~g-av~~~~~i~~~~~~----------------------l~-------~~~~~~~~l~~~L  198 (284)
                       .+|  +++|||+++  +++| ++++++++++.+..                      ++       +..+..+++.+.|
T Consensus       187 -~~~~~~~s~SK~~~--~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L  263 (333)
T PRK10534        187 -YCDSFTICLSKGLG--TPVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAEQL  263 (333)
T ss_pred             -cCCEEEEEeEcCCC--CcccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence             123  468999765  3577 57788988776643                      11       1112334666667


Q ss_pred             Hhc-------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        199 GIN-------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       199 ~~~-------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +++       .+.++.+.+ +. .....+.+.|+++||++.++    ..+|+...+.+|++++++++++|++++.
T Consensus       264 ~~~g~~~~~~~~nfv~~~~-~~-~~~~~~~~~l~~~gi~v~~~----~~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        264 REAGADVMRQDTNMLFVRV-GE-EQAAALGEYMRERNVLINAS----PIVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             HhCCCccCCCCceEEEEEC-Cc-hhHHHHHHHHHHcCeeecCC----ceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            664       233444444 21 24567888899999999864    3678887777899999999999987653

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.27  E-value=1.4e-10  Score=106.11  Aligned_cols=169  Identities=15%  Similarity=0.190  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++.+++.+.    ++.+|++-.-.+..|. ..+.+.+++|.+.|++ ++++|+||+|..|..... .  .......|.++
T Consensus       136 ~~~l~~~~~----~~~lv~l~nPnNPTG~-~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~s-~--~~~~~~~~n~i  206 (351)
T PRK01688        136 LPAIADNLD----GVKVVYVCSPNNPTGN-LINPQDLRTLLELTRG-KAIVVADEAYIEFCPQAS-L--AGWLAEYPHLV  206 (351)
T ss_pred             HHHHHHhcc----CCcEEEEeCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCCC-h--HHHHhhCCCEE
Confidence            455655442    4455555433555676 4578888888888876 689999999987732111 1  11112234543


Q ss_pred             ---Eeccccc-CCcceeEEEecHHHHHhchh------------------h------------hhHHHHHHHHHHHHHhc-
Q psy11784        157 ---TVGKPMG-NGMPIGAVITSRKIAESLNC------------------L------------DDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       157 ---~~sK~l~-~G~p~gav~~~~~i~~~~~~------------------l------------~~~~~~~~~l~~~L~~~-  201 (284)
                         +|||.+| .|+++|++++++++++.+..                  +            +.+.+..+++.+.|+++ 
T Consensus       207 v~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  286 (351)
T PRK01688        207 ILRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIP  286 (351)
T ss_pred             EEecchHhhcCHHHHHhHHhCCHHHHHHHHhccCCCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence               7899998 78999999999999876654                  1            12223345555666553 


Q ss_pred             --------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC---CCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        202 --------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE---YGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       202 --------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                              .+.++.+.+ +   ...++.+.|+++||+++.++.   ..+++|++..   +++|.+.++++|
T Consensus       287 ~~~~~~ps~~nfi~~~~-~---~~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~---~~~e~~~l~~al  350 (351)
T PRK01688        287 CVEQVFDSETNYILARF-T---ASSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG---TREECQRVIDAL  350 (351)
T ss_pred             CCCeECCCCCcEEEEEc-C---CHHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC---CHHHHHHHHHhh
Confidence                    123334433 2   357889999999999986542   2478999743   789999999876

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.26  E-value=6.9e-10  Score=102.04  Aligned_cols=172  Identities=12%  Similarity=0.087  Sum_probs=114.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++   +++++|++....+..|.+.+    +++|.++|++||+++|+|++|+ +|...   +..+  ...+|++
T Consensus       127 ~~~l~~~~~---~~~~~v~~~~~~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~---~~~~--~~~~D~~  193 (376)
T TIGR01977       127 PERIKRAIK---TNTKLIVVSHASNVTGTILP----IEEIGELAQENGIFFILDAAQT-AGVIP---IDMT--ELAIDML  193 (376)
T ss_pred             HHHHHHhcC---CCCeEEEEECCCCCccccCC----HHHHHHHHHHcCCEEEEEhhhc-cCccC---CCch--hcCCCEE
Confidence            566666664   45778888888888898887    8999999999999999999996 44322   1112  2347887


Q ss_pred             Eec--ccccCCcceeEEEecHHHH-Hh----------------------chh--------------------------hh
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIA-ES----------------------LNC--------------------------LD  185 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~-~~----------------------~~~--------------------------l~  185 (284)
                      +++  |++++.-..|+++.+++.. ..                      +..                          .+
T Consensus       194 ~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~  273 (376)
T TIGR01977       194 AFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAK  273 (376)
T ss_pred             EecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            655  9887533355555544320 00                      000                          12


Q ss_pred             hHHHHHHHHHHHHHhccC-------------ceeEEEEecccHHHHHHHHHHHHC-CcEEeecC------------CCCC
Q psy11784        186 DNRPSGKYLVRPLGINLH-------------IFWCLILLSITYYLYRYTRRMKEA-KIIVANEG------------EYGN  239 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~~G-------------~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------------~~~~  239 (284)
                      +.+++.+++.+.|++..|             .++.+.+ + ......+.+.|.++ ||.+..+.            ...+
T Consensus       274 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~-~-~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~  351 (376)
T TIGR01977       274 KECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTV-E-GIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATG  351 (376)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEE-C-CCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCC
Confidence            455666777777775411             2233333 2 22456788899887 99987542            1246


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        240 VLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       240 ~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .+|+.+...+|++|++.++++|++
T Consensus       352 ~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       352 TIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             eEEEecCCCCCHHHHHHHHHHHhh
Confidence            899999999999999999999864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PLN02397 aspartate transaminase

Probab=99.24  E-value=1.4e-09  Score=101.95  Aligned_cols=176  Identities=19%  Similarity=0.195  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC--cccccccc-CCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS--HFWAFQTQ-GAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~--~~~a~~~~-g~~p  153 (284)
                      .+.+++.+....++..++++-.-++-.|. .++++.+++|.++|++||+++|.||+|.+|...+.  .......+ ....
T Consensus       181 ~~~l~~~l~~~~~~~~~i~~~~P~NPTG~-v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~  259 (423)
T PLN02397        181 FDGLLEDLKAAPDGSFVLLHACAHNPTGV-DPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGH  259 (423)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCC
Confidence            45566666533344555555544555675 55899999999999999999999999998843220  01111111 1112


Q ss_pred             cEE---Eeccccc-CCcceeEEE--e-cHHHHH----hchh--------------------hh-----------------
Q psy11784        154 DII---TVGKPMG-NGMPIGAVI--T-SRKIAE----SLNC--------------------LD-----------------  185 (284)
Q Consensus       154 Div---~~sK~l~-~G~p~gav~--~-~~~i~~----~~~~--------------------l~-----------------  185 (284)
                      .++   +|||.++ .|+++|+++  + ++++++    .+..                    ++                 
T Consensus       260 ~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~  339 (423)
T PLN02397        260 EILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMAD  339 (423)
T ss_pred             cEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            233   7899999 699999984  3 444332    2211                    11                 


Q ss_pred             hHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEcCCCCCHH
Q psy11784        186 DNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p~l~~t~~  252 (284)
                      .++++.+.+.+.|+++            .|+++++.+      ..++++.|+ +.||.+.+    ++  |++.. ..+++
T Consensus       340 ~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l------~~~~~~~Ll~~~~V~v~~----~~--Ri~~~-~~~~~  406 (423)
T PLN02397        340 RIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGL------NKEQVDRMTKEYHIYMTR----DG--RISMA-GLSSK  406 (423)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCC------CHHHHHHHHHhCCEEECC----CC--eEEEe-eCCHH
Confidence            2334455555555542            122233332      135788886 56999973    23  77542 37999


Q ss_pred             HHHHHHHHHHHHHH
Q psy11784        253 NVLFIVSTLNRIFT  266 (284)
Q Consensus       253 ~id~~~~~l~~~l~  266 (284)
                      .+++++++|.++++
T Consensus       407 ~i~~~~~~i~~~~~  420 (423)
T PLN02397        407 NVPYLADAIHAVVT  420 (423)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999874

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.24  E-value=4e-10  Score=104.18  Aligned_cols=134  Identities=12%  Similarity=0.129  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +++++|++|...+..|...+    +++|.++|+++|+++|+||+++.+ ....      .....+|++
T Consensus       129 ~~~l~~~i~---~~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~-~~~~------pl~~g~Div  194 (380)
T TIGR01325       129 LNAWEAAVK---PNTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATP-VLQQ------PLKLGADVV  194 (380)
T ss_pred             HHHHHHhcC---CCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccCC------chhhCCCEE
Confidence            455666554   45889999988887887776    999999999999999999998632 1111      123347888


Q ss_pred             E--ecccccC-Ccce-eEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        157 T--VGKPMGN-GMPI-GAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       157 ~--~sK~l~~-G~p~-gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                      +  ++|.++| |..+ |++++++++++.+..                           +++..+..+++.+.|++.    
T Consensus       195 v~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~  274 (380)
T TIGR01325       195 VYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQ  274 (380)
T ss_pred             EeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            5  7899987 5554 777778887665543                           335555666666666653    


Q ss_pred             ----------------------cCceeEEEEecccHHHHHHHHHHH
Q psy11784        202 ----------------------LHIFWCLILLSITYYLYRYTRRMK  225 (284)
Q Consensus       202 ----------------------~G~~~~i~~~~~~~~~~~~~~~l~  225 (284)
                                            .|.|+.+++. ..+.+.+|.+.|.
T Consensus       275 ~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~-~~~~~~~f~~~l~  319 (380)
T TIGR01325       275 AVYYPGLPDHPQHELARRQQSGGGTVIGFDVA-DRAAAWKVLDAVE  319 (380)
T ss_pred             EEECCCCCCCccHHHHHhhCCCCceEEEEEEC-CHHHHHHHHHcCC
Confidence                                  4668888885 4445666766653

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.24  E-value=1e-09  Score=101.09  Aligned_cols=178  Identities=13%  Similarity=0.072  Sum_probs=113.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-CCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-g~~pDi  155 (284)
                      .+++++.+..   +..+|++...++..|.+ .+.+.+++|.++|++ ++++|+||++..|-..+......... ...+.+
T Consensus       149 ~~~l~~~~~~---~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~v  223 (371)
T PRK05166        149 LDALCAAVAR---APRMLMFSNPSNPVGSW-LTADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPW  223 (371)
T ss_pred             HHHHHHhhhc---CCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCE
Confidence            5667776652   33445553335556764 477788888888864 89999999998663212100111111 112233


Q ss_pred             E---Eeccccc-CCcceeEEEe-cHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        156 I---TVGKPMG-NGMPIGAVIT-SRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       156 v---~~sK~l~-~G~p~gav~~-~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      +   +|||.++ .|+++|++++ ++++++.+..                            ++.++++.+++.+.|++. 
T Consensus       224 i~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g  303 (371)
T PRK05166        224 IVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEMG  303 (371)
T ss_pred             EEEeechHhhhcchhheeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            3   6899999 8999999775 6777766543                            123445556666777653 


Q ss_pred             ------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       202 ------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                            .|.++++.+.   ....++++.|.++||++.++..  ..+.+|++..   ++++.+.+++.|+.++
T Consensus       304 ~~~~p~~g~fl~~~~~---~~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        304 YRIAPSRANFLFFDAR---RPASAVAEALLRQGVIVKPWKQPGFETFIRVSIG---SPEENDHFVAALDKVL  369 (371)
T ss_pred             CeeCCCcCCEEEEeCC---CCHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence                  4556666542   2357799999999999998643  2578999644   5777888888887654

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.23  E-value=3.8e-10  Score=102.98  Aligned_cols=160  Identities=19%  Similarity=0.229  Sum_probs=103.9

Q ss_pred             EEEEcceecCCCcccCChhHHHHHHHHHHHh-CCEEEEecccccCccccCccccccccCCCCc-EE--Eeccccc-CCcc
Q psy11784         93 TLICEPVFVVHGAVVPPPGWLSLMYDYIHEI-GGVVIADEIQCGMGRSGSHFWAFQTQGAVPD-II--TVGKPMG-NGMP  167 (284)
Q Consensus        93 avi~Epv~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD-iv--~~sK~l~-~G~p  167 (284)
                      .++..| +.-.|...+ .+.+   .++++++ ++++|+||+|..|+.  ......  ....+. ++  +|||.++ .|++
T Consensus       148 v~~~~P-~NPtG~~~~-~~~~---~~l~~~~~~~~livDe~y~~~~~--~~~~~~--~~~~~~~i~~~S~SK~~~~~GlR  218 (353)
T PRK05387        148 IIFPNP-NAPTGIALP-LAEI---ERILAANPDSVVVIDEAYVDFGG--ESAIPL--IDRYPNLLVVQTFSKSRSLAGLR  218 (353)
T ss_pred             EEEeCC-CCCCCCCCC-HHHH---HHHHHhCCCcEEEEeCcccccCC--cchHHH--HhhCCCEEEEEehhHhhcchhhh
Confidence            355666 666777654 4444   4445444 999999999987742  111111  111222 33  6899998 7999


Q ss_pred             eeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc-------cCceeEEE
Q psy11784        168 IGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN-------LHIFWCLI  209 (284)
Q Consensus       168 ~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~-------~G~~~~i~  209 (284)
                      +|++++++++.+.+..                               .++++++.+++.+.|++.       .|.++++.
T Consensus       219 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  298 (353)
T PRK05387        219 VGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEALGFEVLPSKANFVFAR  298 (353)
T ss_pred             ceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeECCCcCcEEEEE
Confidence            9999999988766432                               124455566666777653       23344444


Q ss_pred             EecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        210 LLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       210 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      + + .....++++.|.++||.+.+.+.  ..+.+|++..   +++++++++++|.+++.
T Consensus       299 ~-~-~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        299 H-P-SHDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA  352 (353)
T ss_pred             C-C-CCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence            3 2 23467889999999999975432  2468999643   77999999999988753

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.23  E-value=2.3e-09  Score=98.31  Aligned_cols=161  Identities=12%  Similarity=0.119  Sum_probs=102.0

Q ss_pred             eEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc-ccccCCCCcE---EEeccccc-CCc
Q psy11784         92 ATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA-FQTQGAVPDI---ITVGKPMG-NGM  166 (284)
Q Consensus        92 aavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a-~~~~g~~pDi---v~~sK~l~-~G~  166 (284)
                      ..++..| ++-.|....    .++|.++++++++ +|+||+|..|...+. .-. .....-.+.+   -+|||.++ .|+
T Consensus       151 ~~~l~nP-~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~-~~s~~~~~~~~~~vi~i~S~SK~~~l~Gl  223 (360)
T PRK07392        151 GLLLNNP-HNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDA-EQSLIPCLAEYPNLIILRSLTKFYSLPGL  223 (360)
T ss_pred             EEEEeCC-CCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCcc-ccchHHHhhcCCCEEEEEechhhhcCCch
Confidence            3445555 666787665    4567888889985 666999998854442 111 1111222333   37899999 899


Q ss_pred             ceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc--------cCceeEEEE
Q psy11784        167 PIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN--------LHIFWCLIL  210 (284)
Q Consensus       167 p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~--------~G~~~~i~~  210 (284)
                      ++|++++++++++.+..                            .+.++++.+++.+.|+++        .|.++++.+
T Consensus       224 RiG~~v~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~fl~~~~  303 (360)
T PRK07392        224 RLGYAIAHPDRLQRWQQWRDPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTPLPSAANFLLVQS  303 (360)
T ss_pred             heeeeeCCHHHHHHHHhhCCCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCCEEEEEc
Confidence            99999999988876654                            113445566666667654        344555554


Q ss_pred             ecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        211 LSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       211 ~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      .   ....++++.++ ++||.+.++..+    .+++|+...   +.++.+++.+.|++++
T Consensus       304 ~---~~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~~~~~l~~al~~~~  357 (360)
T PRK07392        304 Q---GSALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVR---TEAENQRLLEALAAIL  357 (360)
T ss_pred             C---CCHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence            2   24567887765 679999987543    368999633   3455566666665544

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.23  E-value=2.1e-09  Score=99.83  Aligned_cols=174  Identities=16%  Similarity=0.192  Sum_probs=104.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccc-cCccccccc-cCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRS-GSHFWAFQT-QGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~-G~~~~a~~~-~g~~pD  154 (284)
                      .+.+++.+........++++-.-++-.|. ..+++.+++|.++|++||+++|.||+|..|... +........ .+..+.
T Consensus       159 ~~~l~~~~~~~~~~~~~~i~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  237 (396)
T PRK09257        159 FDAMLADLSQAPAGDVVLLHGCCHNPTGA-DLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLE  237 (396)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCc
Confidence            56777777643333344444545666776 569999999999999999999999999987532 110111111 111223


Q ss_pred             E---EEecccccC-CcceeEEEe---cHH----HHHhchh--------------------h-----------------hh
Q psy11784        155 I---ITVGKPMGN-GMPIGAVIT---SRK----IAESLNC--------------------L-----------------DD  186 (284)
Q Consensus       155 i---v~~sK~l~~-G~p~gav~~---~~~----i~~~~~~--------------------l-----------------~~  186 (284)
                      +   -+|||.++- |+++|++++   +++    ++..+..                    +                 ++
T Consensus       238 vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~  317 (396)
T PRK09257        238 LLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRER  317 (396)
T ss_pred             EEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3   378999995 999999973   333    3222211                    1                 02


Q ss_pred             HHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHH-HHCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        187 NRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRM-KEAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      ++++.+.+.+.|++.            .|+++++.+ +     .+++..+ .++||.+.|.    +  ||..+ +.++++
T Consensus       318 ~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l-~-----~~~~~~l~~~~~V~~~p~----~--ri~~~-~~~~~~  384 (396)
T PRK09257        318 IKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGL-T-----PEQVDRLREEFGVYAVGS----G--RINVA-GLNESN  384 (396)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcccccccceEEEecCC-C-----HHHHHHHHHcCCEEEcCC----C--eEEEe-eCCHHH
Confidence            233444444444432            223333433 1     1344444 5779998852    2  77543 379999


Q ss_pred             HHHHHHHHHHH
Q psy11784        254 VLFIVSTLNRI  264 (284)
Q Consensus       254 id~~~~~l~~~  264 (284)
                      |++++++|.++
T Consensus       385 i~~~~~~i~~~  395 (396)
T PRK09257        385 IDYVAEAIAAV  395 (396)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

>PRK08354 putative aminotransferase; Provisional

Probab=99.22  E-value=1.1e-09  Score=98.54  Aligned_cols=172  Identities=15%  Similarity=0.162  Sum_probs=107.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   ..-..++..| ++-.|. ..+.+.+++|.++|++||+++|.||++.+|...+. .  .. ....--+-
T Consensus       108 ~~~l~~~~~---~~~~vi~~~P-~NPTG~-~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~-~--~~-~~~vi~~~  178 (311)
T PRK08354        108 PEKLEELVE---RNSVVFFCNP-NNPDGK-FYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE-S--PE-GENIIKLR  178 (311)
T ss_pred             HHHHHHhhc---CCCEEEEecC-CCCCCC-ccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc-c--cC-CCcEEEEe
Confidence            455666554   2234667778 455676 56889999999999999999999999998743222 1  11 11111123


Q ss_pred             Eeccccc-CCcceeEEEecHHHHHhchh---------------h----hhHHHHHHHHHHHHHhc--------cCceeEE
Q psy11784        157 TVGKPMG-NGMPIGAVITSRKIAESLNC---------------L----DDNRPSGKYLVRPLGIN--------LHIFWCL  208 (284)
Q Consensus       157 ~~sK~l~-~G~p~gav~~~~~i~~~~~~---------------l----~~~~~~~~~l~~~L~~~--------~G~~~~i  208 (284)
                      +|||.++ .|+++|++++-.+.+..+..               +    +++++..+++++..+.+        .|.++.+
T Consensus       179 S~SK~~~l~GlRiG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  258 (311)
T PRK08354        179 TFTKSYGLPGIRVGYVKGFEEAFRSVRMPWSIGSTGYAFLEFLIEDDFEHLRKTMPLIWREKERFEKALYVKSDANFFIK  258 (311)
T ss_pred             ccHhhcCCccceeeeeeehHHHHHHcCCCccCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEE
Confidence            6899999 89999999984333332211               1    12222233333333322        3444445


Q ss_pred             EEecccHHHHHHHHHHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        209 ILLSITYYLYRYTRRMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       209 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      ++ +   ...++++.|.++||++.++..+  .+++||+.   .++++.+++++.|+++
T Consensus       259 ~~-~---~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~---~~~~~~~~l~~al~~~  309 (311)
T PRK08354        259 DV-G---DAEKFVEFLKRNGILVRDCTSFGLPGYIRFSV---RDREENEKLIRALREW  309 (311)
T ss_pred             EC-C---CHHHHHHHHHHCCeEEEecccCCCCCeEEEEe---CCHHHHHHHHHHHHHh
Confidence            44 2   3467889999999999998654  37899963   3556677777777653

>KOG0256|consensus

Probab=99.22  E-value=1.6e-09  Score=97.33  Aligned_cols=187  Identities=17%  Similarity=0.186  Sum_probs=130.5

Q ss_pred             HHHHHHHHH---hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc--CccccCccccccc---
Q psy11784         77 AQAARNIME---AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQT---  148 (284)
Q Consensus        77 ~~~l~~~i~---~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--~gr~G~~~~a~~~---  148 (284)
                      .++||+++.   +.+..|.+||+-.-++.-|. ..+++-|..+.+.+.++++.||+|||++|  |+..+  +-+...   
T Consensus       210 v~alE~A~~~A~~~~~kVkGvlitNPsNPLG~-~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~--F~Sv~ev~~  286 (471)
T KOG0256|consen  210 VEALEAALNQARKLGLKVKGVLITNPSNPLGT-TLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSE--FRSVLEVRK  286 (471)
T ss_pred             HHHHHHHHHHHHHhCCceeEEEEeCCCCCCCC-ccCHHHHHHHHHHHhhcceEEEeehhhcccccCccC--ceEHHHHhh
Confidence            455666655   12334877765443444454 56899999999999999999999999986  44332  222211   


Q ss_pred             c-CCCCcE----EEeccccc-CCcceeEEEe-cHHHHHhchh--------------------------------hhhHHH
Q psy11784        149 Q-GAVPDI----ITVGKPMG-NGMPIGAVIT-SRKIAESLNC--------------------------------LDDNRP  189 (284)
Q Consensus       149 ~-g~~pDi----v~~sK~l~-~G~p~gav~~-~~~i~~~~~~--------------------------------l~~~~~  189 (284)
                      . ...||-    ..+||-+| .|+++|++.. ++++..+...                                ..+++.
T Consensus       287 ~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~  366 (471)
T KOG0256|consen  287 DPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRI  366 (471)
T ss_pred             ccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            1 125663    37899999 5899999998 5666655443                                226777


Q ss_pred             HHHHHHHHHHhc--------cCceeEEEEe----c-ccHHHHHHHHHHHHC-CcEEeecCC----CCCEEEEEcCCCCCH
Q psy11784        190 SGKYLVRPLGIN--------LHIFWCLILL----S-ITYYLYRYTRRMKEA-KIIVANEGE----YGNVLLFLPAMCLTT  251 (284)
Q Consensus       190 ~~~~l~~~L~~~--------~G~~~~i~~~----~-~~~~~~~~~~~l~~~-Gv~~~~~~~----~~~~lr~~p~l~~t~  251 (284)
                      +-+++.++|+++        .|+++++++.    + ..+.-..+++.+.++ ++.+.|+..    ..+++|+..+ +..+
T Consensus       367 rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFA-n~~~  445 (471)
T KOG0256|consen  367 RHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFA-NMSE  445 (471)
T ss_pred             HHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEec-cCCH
Confidence            888888999887        8999999986    1 122334677777777 999998754    4579998643 5566


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11784        252 ENVLFIVSTLNRIFTS  267 (284)
Q Consensus       252 ~~id~~~~~l~~~l~~  267 (284)
                      +.++-+++|+..++..
T Consensus       446 ~t~~~am~Ri~~~~~~  461 (471)
T KOG0256|consen  446 ETLEVAMRRLKQFLDS  461 (471)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6677799999998873

>PRK07908 hypothetical protein; Provisional

Probab=99.22  E-value=7.3e-10  Score=101.12  Aligned_cols=162  Identities=14%  Similarity=0.183  Sum_probs=109.0

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE---Eeccccc-CC
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII---TVGKPMG-NG  165 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv---~~sK~l~-~G  165 (284)
                      ++.++++-..++..|...+    .++|.++|++ +.++|+||+|..| ..|. .......+ .++++   +|||.++ .|
T Consensus       139 ~~~~i~l~np~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~-~~~~-~~~l~~~~-~~~~i~i~S~SK~~~l~G  210 (349)
T PRK07908        139 DADLVVIGNPTNPTSVLHP----AEQLLALRRP-GRILVVDEAFADA-VPGE-PESLAGDD-LPGVLVLRSLTKTWSLAG  210 (349)
T ss_pred             CCCEEEEcCCCCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhh-ccCC-cccccccc-CCCEEEEeecccccCCcc
Confidence            4556666333566787665    4467778864 7889899999866 2232 11211111 23433   6799998 89


Q ss_pred             cceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc--------cCceeE
Q psy11784        166 MPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN--------LHIFWC  207 (284)
Q Consensus       166 ~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~--------~G~~~~  207 (284)
                      +++|++++++++++.+..                              .++++++.+++.+.|++.        .|.+++
T Consensus       211 lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~~~  290 (349)
T PRK07908        211 LRVGYALGAPDVLARLTRGRAHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAPFVL  290 (349)
T ss_pred             ceeeeeecCHHHHHHHHhcCCCCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCCCceEEE
Confidence            999999999988877653                              113445555666666653        345556


Q ss_pred             EEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        208 LILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       208 i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +.+ +.   ...+.+.|.++||.+.++..+    .+++|++.   .++++++++++.|++++.
T Consensus       291 ~~~-~~---~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        291 VRV-PD---AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILK  346 (349)
T ss_pred             EEC-Cc---HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHh
Confidence            655 22   467888888999999987543    47899975   478899999999987754

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.21  E-value=1.2e-09  Score=99.92  Aligned_cols=172  Identities=16%  Similarity=0.115  Sum_probs=112.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccc-cccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFW-AFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~-a~~~~g~~pDi  155 (284)
                      .+.+++.+..  .++.+|++-.-+...|... +.+.+++|.++|   ++++|+||+|..|.. .. +. ....++-.--+
T Consensus       142 ~~~l~~~~~~--~~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~~---~~~ii~De~y~~~~~-~~-~~~~~~~~~~vi~~  213 (356)
T PRK04870        142 LPAMLAAIAE--HRPALVFLAYPNNPTGNLF-DDADVERIIEAA---PGLVVVDEAYQPFAG-DS-WLPRLARFPNLLVM  213 (356)
T ss_pred             HHHHHHHhhc--CCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHC---CCEEEEECCchhhcC-cc-hHHHHhhCCCEEEE
Confidence            5677777752  2455565543356667654 677777777777   789999999987742 11 11 11111111112


Q ss_pred             EEeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      -+||| ++ .|+++|++++++++++.+..                            +++++++.+++.+.|+++     
T Consensus       214 ~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  292 (356)
T PRK04870        214 RTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVTV  292 (356)
T ss_pred             ecchh-hhhHHHhhhhhhCCHHHHHHHHHccCCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence            36899 55 48999999999988877643                            224445566666666654     


Q ss_pred             ---cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        202 ---LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       202 ---~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                         .|.++++.+ +   ...++++.|.++||.+.++..+    .+.+|++..   +.++.+.++++|+++
T Consensus       293 ~~~~~~~~~~~~-~---~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~  355 (356)
T PRK04870        293 FPSAANFILVRV-P---DAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALKAA  355 (356)
T ss_pred             CCCCCeEEEEEC-C---CHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence               344555554 2   3467888999999999986433    468999644   789999999998765

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.21  E-value=3.9e-09  Score=99.80  Aligned_cols=178  Identities=13%  Similarity=0.104  Sum_probs=112.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .++++++++.....+  |++  ..+..|...+    +++|.++|+++|+++++|++|+ +|..+...+... .. ..|++
T Consensus       171 ~~~L~~~l~~~~~~l--vi~--~~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~-~~-~~D~l  239 (452)
T PTZ00094        171 YDKLEELAKAFRPKL--IIA--GASAYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSP-FP-YADVV  239 (452)
T ss_pred             HHHHHHHHHHhCCCE--EEE--eCCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCC-CC-CCcEE
Confidence            678888886433333  333  1234566666    9999999999999999999997 544432111111 11 47888


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhc----hh---------------------------------hhhHHHHHHHHHHH
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESL----NC---------------------------------LDDNRPSGKYLVRP  197 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~----~~---------------------------------l~~~~~~~~~l~~~  197 (284)
                      +++  |++.|.. .|++++++++.+.+    ..                                 .+++.++.++|.+.
T Consensus       240 ~~S~hK~l~GP~-Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~  318 (452)
T PTZ00094        240 TTTTHKSLRGPR-SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAA  318 (452)
T ss_pred             EcCCccCCCCCC-ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence            765  9997633 26666665442211    00                                 22566777788888


Q ss_pred             HHhccCcee----------EEEEecccHHHHHHHHHHHHCCcEEeec-CC------CCCEEEEEcCCCCC----HHHHHH
Q psy11784        198 LGINLHIFW----------CLILLSITYYLYRYTRRMKEAKIIVANE-GE------YGNVLLFLPAMCLT----TENVLF  256 (284)
Q Consensus       198 L~~~~G~~~----------~i~~~~~~~~~~~~~~~l~~~Gv~~~~~-~~------~~~~lr~~p~l~~t----~~~id~  256 (284)
                      |++. |+-+          .+.+.........+...|.++||++... .+      ..+.+|+.|+...|    ++|+++
T Consensus       319 L~~~-g~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~  397 (452)
T PTZ00094        319 LEKR-GYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKF  397 (452)
T ss_pred             HHhC-CcEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHH
Confidence            8663 3211          1122111224556777777789999521 11      23689999977765    999999


Q ss_pred             HHHHHHHHHHH
Q psy11784        257 IVSTLNRIFTS  267 (284)
Q Consensus       257 ~~~~l~~~l~~  267 (284)
                      +++.|.+++..
T Consensus       398 l~~~l~~~~~~  408 (452)
T PTZ00094        398 VADFLDRAVKL  408 (452)
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>PLN02672 methionine S-methyltransferase

Probab=99.19  E-value=2.9e-09  Score=108.23  Aligned_cols=186  Identities=12%  Similarity=0.109  Sum_probs=121.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcc--cccc----cc-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHF--WAFQ----TQ-  149 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~--~a~~----~~-  149 (284)
                      .+.+++.+... ...+.++.-|-++-.|. .++++.+++|.++|++||+++|.||+|.++-..+...  +...    .+ 
T Consensus       817 ~d~Le~al~~~-~~~~I~L~nPnhNPTG~-v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~  894 (1082)
T PLN02672        817 AKTLASTLETV-KKPWVYISGPTINPTGL-LYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLK  894 (1082)
T ss_pred             HHHHHHHhccC-CCCEEEEECcCCCCcCc-cCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhc
Confidence            46677777521 12356778886566675 5699999999999999999999999998764444311  1110    11 


Q ss_pred             CCCC--cEE---Eeccccc-CCcceeEEEec-HHHHHhchh------------------h------------------hh
Q psy11784        150 GAVP--DII---TVGKPMG-NGMPIGAVITS-RKIAESLNC------------------L------------------DD  186 (284)
Q Consensus       150 g~~p--Div---~~sK~l~-~G~p~gav~~~-~~i~~~~~~------------------l------------------~~  186 (284)
                      ...+  .++   +|||.++ .|+++|+++++ +++++.+..                  +                  +.
T Consensus       895 ~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~  974 (1082)
T PLN02672        895 SSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKI  974 (1082)
T ss_pred             cccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence            1112  222   6788887 58999999996 446665532                  1                  01


Q ss_pred             HHHHHHHHHHHHHhc--------cCceeEEEEec---------c-------cHHHHHHHHHHHHC-CcEEeecCCC--CC
Q psy11784        187 NRPSGKYLVRPLGIN--------LHIFWCLILLS---------I-------TYYLYRYTRRMKEA-KIIVANEGEY--GN  239 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~--------~G~~~~i~~~~---------~-------~~~~~~~~~~l~~~-Gv~~~~~~~~--~~  239 (284)
                      ++++.+++.+.|++.        .|+++++.+..         .       ......+++.|+++ ||.+.|+..+  .+
T Consensus       975 Lk~rRd~L~e~L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g 1054 (1082)
T PLN02672        975 LKSRAERLKETLEACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPG 1054 (1082)
T ss_pred             HHHHHHHHHHHHHHCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCC
Confidence            334445555555543        34555554310         0       12457899999875 9999987543  36


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        240 VLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       240 ~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ++|++.  ..+++++++++++|.++.+
T Consensus      1055 ~~RIsf--a~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1055 YCRFSF--ALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             eEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence            899964  5588999999999988654

>PRK14012 cysteine desulfurase; Provisional

Probab=99.18  E-value=1.8e-09  Score=100.55  Aligned_cols=175  Identities=15%  Similarity=0.117  Sum_probs=112.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++..+.+..|.+.+    +++|.++|++||+++|+|++|+ +|..-     .......+|++
T Consensus       134 ~~~l~~~i~---~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~-----~~~~~~~~D~~  200 (404)
T PRK14012        134 LEKLEAAMR---DDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP-----IDLSKLKVDLM  200 (404)
T ss_pred             HHHHHHhcC---CCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc-----cCcccCCCCEE
Confidence            567777775   45678889988888898887    8999999999999999999997 33221     11123458998


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhc-------------hh-------------------------hhhHHHHHHHHHH
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESL-------------NC-------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~-------------~~-------------------------l~~~~~~~~~l~~  196 (284)
                      ++|  |.++. ..+|+++++++....+             ..                         .++.+++.+++.+
T Consensus       201 ~~s~~K~~gp-~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~  279 (404)
T PRK14012        201 SFSAHKIYGP-KGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWN  279 (404)
T ss_pred             EEehhhccCC-CceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            887  96653 2578877765422111             00                         1244556666667


Q ss_pred             HHHhccCc------------eeEEEEecccHHHHHHHHHHHHCCcEEeecC---------------------CCCCEEEE
Q psy11784        197 PLGINLHI------------FWCLILLSITYYLYRYTRRMKEAKIIVANEG---------------------EYGNVLLF  243 (284)
Q Consensus       197 ~L~~~~G~------------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------------------~~~~~lr~  243 (284)
                      .|+++.+.            .+.+.+...  ....+...|.  ++.+..+.                     ...+.+|+
T Consensus       280 ~L~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~--~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRl  355 (404)
T PRK14012        280 GIKDIEEVYLNGDLEQRVPGNLNVSFNYV--EGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRF  355 (404)
T ss_pred             HHhcCCCEEEeCCccccCCCEEEEEEeCc--CHHHHHHhCC--CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEE
Confidence            66653111            001111100  1234555554  43332210                     01368999


Q ss_pred             EcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        244 LPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       244 ~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      .++...|++|+|++++.|+++++.+.
T Consensus       356 s~~~~~t~~dvd~~~~~l~~~~~~~~  381 (404)
T PRK14012        356 SLGRFTTEEEIDYAIELVRKSIGKLR  381 (404)
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988763

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.15  E-value=9e-09  Score=98.02  Aligned_cols=183  Identities=16%  Similarity=0.157  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +++|++.+.   +++++|++.- .+..|..   ..-+++|.++|+++|+++++|.++. .+-.|.  .....+|  .|++
T Consensus       198 ~e~L~~~i~---~~t~~V~v~~-Pn~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~--~~~~~~G--aD~~  265 (481)
T PRK04366        198 LEALKAAVG---EDTAALMLTN-PNTLGLF---ERNILEIAEIVHEAGGLLYYDGANL-NAILGK--ARPGDMG--FDVV  265 (481)
T ss_pred             HHHHHhhcc---cCCeEEEEeC-CCCcccc---chHHHHHHHHHHHcCCEEEEEecCh-hhhccc--CCccccC--CCEE
Confidence            567777664   4566666643 2345643   2248999999999999999999985 222232  1112233  5887


Q ss_pred             Ee--cccccC-----CcceeEEEecHHHHHhchh----------------------------------------------
Q psy11784        157 TV--GKPMGN-----GMPIGAVITSRKIAESLNC----------------------------------------------  183 (284)
Q Consensus       157 ~~--sK~l~~-----G~p~gav~~~~~i~~~~~~----------------------------------------------  183 (284)
                      ++  -|.+++     |--+|++.+++++.+.+..                                              
T Consensus       266 ~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~  345 (481)
T PRK04366        266 HLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAE  345 (481)
T ss_pred             EEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHH
Confidence            65  388862     2235666666655544310                                              


Q ss_pred             -h----hhHHHHHHHHHHHHHhccCce------eEEEEe-c----ccHHHHHHHHHHHHCCcEEeecCC---CCCEEEEE
Q psy11784        184 -L----DDNRPSGKYLVRPLGINLHIF------WCLILL-S----ITYYLYRYTRRMKEAKIIVANEGE---YGNVLLFL  244 (284)
Q Consensus       184 -l----~~~~~~~~~l~~~L~~~~G~~------~~i~~~-~----~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~lr~~  244 (284)
                       +    ++...+.++++++|+++....      .-+-+. +    ......++.++|.++|+.+.....   ..+.+|++
T Consensus       346 Gl~~~a~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is  425 (481)
T PRK04366        346 GLREVSEDAVLNANYLKARLKDIYDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIE  425 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhCcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEc
Confidence             1    134455778888888741111      111111 0    012567899999999998762211   24689999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        245 PAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       245 p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      |....|++|||.+++.|.++.+++.++
T Consensus       426 ~~e~~t~edid~l~~~l~~i~~~~~~~  452 (481)
T PRK04366        426 PTETESKETLDAFIAAMKQIAEEAKEN  452 (481)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999887643

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.15  E-value=3e-09  Score=97.81  Aligned_cols=171  Identities=12%  Similarity=0.121  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhcCCCeeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++++.+.   +++.+++ +..-.+..|...+    +++|.++|++||+++|+|++|+ .  .   ......+|  .|+
T Consensus       138 ~~~le~ai~---~~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~---~~~~~~~g--~D~  202 (363)
T TIGR01437       138 AEQLEAAIT---EKTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E--D---LQKYYRLG--ADL  202 (363)
T ss_pred             HHHHHHhcC---hhceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C--c---hHHHHHcC--CCE
Confidence            567787775   3444554 4443334555555    8899999999999999999996 2  1   11111123  588


Q ss_pred             EEec--ccccCCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        156 ITVG--KPMGNGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       156 v~~s--K~l~~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +++|  |.++|. ..|+++++++.++.+..                                 ++...++.+++.++|.+
T Consensus       203 ~~~S~~K~l~gp-~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~  281 (363)
T TIGR01437       203 VIYSGAKAIEGP-TSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNT  281 (363)
T ss_pred             EEEeCCcccCCC-ceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhc
Confidence            7765  988643 58888888877665311                                 12333445567777776


Q ss_pred             ccCce--------------eEEEEec--ccHHHHHHHHHHHHCC--cEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        201 NLHIF--------------WCLILLS--ITYYLYRYTRRMKEAK--IIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       201 ~~G~~--------------~~i~~~~--~~~~~~~~~~~l~~~G--v~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      +.|+-              ..+.+..  ......++.+.|.++|  |++++.....+.+++.|+. .+++|++.++++|.
T Consensus       282 i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l~  360 (363)
T TIGR01437       282 LKGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-VTGGQLDIIVERIR  360 (363)
T ss_pred             CCCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-CCHHHHHHHHHHHH
Confidence            52321              1222221  1235678999998877  7776533345688999885 67999999999998


Q ss_pred             HH
Q psy11784        263 RI  264 (284)
Q Consensus       263 ~~  264 (284)
                      ++
T Consensus       361 ~~  362 (363)
T TIGR01437       361 EI  362 (363)
T ss_pred             Hh
Confidence            75

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PLN02651 cysteine desulfurase

Probab=99.14  E-value=1.9e-09  Score=98.94  Aligned_cols=161  Identities=15%  Similarity=0.073  Sum_probs=105.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++   +++..|++..+.+..|.+.+    +++|.++|++||+++++|.+|+ +|..   .+-.+  ...+|++
T Consensus       128 ~~~l~~~i~---~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~---~~~~~--~~~~D~~  194 (364)
T PLN02651        128 LDELAAAIR---PDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI---PVDVD--DLGVDLM  194 (364)
T ss_pred             HHHHHHhcC---CCcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc---ccCcc--cCCCCEE
Confidence            567777775   45788889888888898888    9999999999999999999997 3321   12222  3446998


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhchh--------------------------------------hhhHHHHHHHHHH
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESLNC--------------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~~~--------------------------------------l~~~~~~~~~l~~  196 (284)
                      ++|  | ++|...+|+++.+++..+.+..                                      .++.+++.+++.+
T Consensus       195 ~~s~hK-~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~  273 (364)
T PLN02651        195 SISGHK-IYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLN  273 (364)
T ss_pred             Eechhh-hCCCCceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            775  8 4443568888888765443221                                      1245556667777


Q ss_pred             HHHh-ccCc--------------eeEEEEecccHHHHHHHHHHHHCCcEEeecCC---------------------CCCE
Q psy11784        197 PLGI-NLHI--------------FWCLILLSITYYLYRYTRRMKEAKIIVANEGE---------------------YGNV  240 (284)
Q Consensus       197 ~L~~-~~G~--------------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------~~~~  240 (284)
                      .|++ +.|+              ++.+.+ + ......+.+.|.+  |.++.+..                     ..+.
T Consensus       274 ~l~~~~~~~~i~~~~~~~~~~~~i~~~~~-~-~~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~  349 (364)
T PLN02651        274 GLRAKLGGVRVNGPRDPEKRYPGTLNLSF-A-YVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGS  349 (364)
T ss_pred             HHHhhCCCEEEECCCCcccCcCCEEEEEe-C-CCCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCce
Confidence            6654 2111              222222 1 2235577777754  66653320                     1368


Q ss_pred             EEEEcCCCCCHHHHH
Q psy11784        241 LLFLPAMCLTTENVL  255 (284)
Q Consensus       241 lr~~p~l~~t~~~id  255 (284)
                      +|++++...|++|||
T Consensus       350 vR~S~~~~~t~~did  364 (364)
T PLN02651        350 LRLGVGRFTTEEEVD  364 (364)
T ss_pred             EEEEcCCCCCHHHcC
Confidence            999999999999985

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.14  E-value=5.5e-09  Score=98.82  Aligned_cols=192  Identities=13%  Similarity=0.076  Sum_probs=120.7

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc----Cccc---cCcccccc-
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG----MGRS---GSHFWAFQ-  147 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----~gr~---G~~~~a~~-  147 (284)
                      .+.|++.+..++ +++++|+++...+..|..+.+.+.+++|+++|++||++||.|+++..    |...   |....... 
T Consensus       163 ~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~  242 (460)
T PRK13238        163 LEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKE  242 (460)
T ss_pred             HHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHH
Confidence            688888887443 45999999977777666788899999999999999999999997742    1110   10000000 


Q ss_pred             ---ccCCCCcEEEec-ccccCCcceeEEE-ec-HHHHHhchh----------------------------------hhhH
Q psy11784        148 ---TQGAVPDIITVG-KPMGNGMPIGAVI-TS-RKIAESLNC----------------------------------LDDN  187 (284)
Q Consensus       148 ---~~g~~pDiv~~s-K~l~~G~p~gav~-~~-~~i~~~~~~----------------------------------l~~~  187 (284)
                         ..+--.|+.++| |-.+. .|.|+++ ++ +++++.+..                                  ++..
T Consensus       243 i~~~~~s~~D~~~~Sg~K~g~-~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~  321 (460)
T PRK13238        243 IAREMFSYADGLTMSAKKDAM-VNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYR  321 (460)
T ss_pred             HhhhhcccCcEEEEecccCCC-CcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHH
Confidence               001126777665 11111 2444444 45 466655432                                  1122


Q ss_pred             HHHHHHHHHHHHhc--------cCceeEEEEec---c----cHHHHHHHHHHH-HCCcEEeecCC---------C-----
Q psy11784        188 RPSGKYLVRPLGIN--------LHIFWCLILLS---I----TYYLYRYTRRMK-EAKIIVANEGE---------Y-----  237 (284)
Q Consensus       188 ~~~~~~l~~~L~~~--------~G~~~~i~~~~---~----~~~~~~~~~~l~-~~Gv~~~~~~~---------~-----  237 (284)
                      .++.++|.+.|++.        .|+++.+++..   .    ......++..|+ +.||.+.+++.         +     
T Consensus       322 ~~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~  401 (460)
T PRK13238        322 IGQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPA  401 (460)
T ss_pred             HHHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCC
Confidence            22457777777765        44555555531   0    112466777777 67999987542         1     


Q ss_pred             -CCEEEEEcCC-CCCHHHHHHHHHHHHHHHHHHh
Q psy11784        238 -GNVLLFLPAM-CLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       238 -~~~lr~~p~l-~~t~~~id~~~~~l~~~l~~~~  269 (284)
                       .+.+||..|- ..|++++|.+.++|..+.+.-.
T Consensus       402 ~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~~  435 (460)
T PRK13238        402 PAELLRLAIPRRVYTQSHMDYVAEALKAVKENRE  435 (460)
T ss_pred             ccceEEEecccccCCHHHHHHHHHHHHHHHHhHh
Confidence             3689998775 4599999999999998875543

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.14  E-value=7.4e-09  Score=92.22  Aligned_cols=237  Identities=16%  Similarity=0.187  Sum_probs=139.6

Q ss_pred             HHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccc-----------cCCCC---CceEEccCCCCcCCCCCCCchH
Q psy11784          6 LALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFML-----------SSEKK---PWVHVIPFPDTYRGEFSADDPQ   71 (284)
Q Consensus         6 ~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~   71 (284)
                      .+-..++...||..++.+.+|=.++.....+...+....           ..+-+   ...+..|..+...+..      
T Consensus        39 ~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gkl------  112 (342)
T COG2008          39 ALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKL------  112 (342)
T ss_pred             HHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCc------
Confidence            333344444588888888888888877766544221000           01111   1111111111111111      


Q ss_pred             HHHHHHHHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc
Q psy11784         72 AAQKYAQAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT  148 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~  148 (284)
                          ..++++..+..   +......+++|.-..++|. ++|.+.|++|.++||+||+.|.+|    |- |...   +.-.
T Consensus       113 ----t~e~v~~~i~~~d~~~~~~~~~~~e~~~te~Gt-Vy~l~el~~i~~~~k~~~l~LHmD----GA-R~~n---A~va  179 (342)
T COG2008         113 ----TPEDVEAAIRPDDIHHAPTPLAVLENTATEGGT-VYPLDELEAISAVCKEHGLPLHMD----GA-RLAN---ALVA  179 (342)
T ss_pred             ----CHHHHHHhhcCCCcccCCCceEEEeeccCCCce-ecCHHHHHHHHHHHHHhCCceeec----hH-HHHH---HHHH
Confidence                15777777763   2334778888887776665 679999999999999999999999    43 3321   2222


Q ss_pred             cC-------CCCcEEEecccccCCcceeEEEe-cHHHHHhchh-------------------------------hhhHHH
Q psy11784        149 QG-------AVPDIITVGKPMGNGMPIGAVIT-SRKIAESLNC-------------------------------LDDNRP  189 (284)
Q Consensus       149 ~g-------~~pDiv~~sK~l~~G~p~gav~~-~~~i~~~~~~-------------------------------l~~~~~  189 (284)
                      +|       ---|+++++-.=++|.|.++++. +++.++.+..                               -++..+
T Consensus       180 lg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~  259 (342)
T COG2008         180 LGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANA  259 (342)
T ss_pred             cCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHH
Confidence            22       12466654433334567777775 7777766543                               125556


Q ss_pred             HHHHHHHHHHhccCceeE---------EEEeccc-HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHH
Q psy11784        190 SGKYLVRPLGINLHIFWC---------LILLSIT-YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVS  259 (284)
Q Consensus       190 ~~~~l~~~L~~~~G~~~~---------i~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~  259 (284)
                      +.++|.+.++...|.-+.         +.+ +.. .........+...|++..+.   +..+||..+..+|++++++++.
T Consensus       260 mA~~La~~~~~~~G~~~~~~~~tN~vf~~l-~~~~i~~l~~~~~~~~~~~~~~~~---~~~vRfvts~a~~~edv~~~~~  335 (342)
T COG2008         260 MAARLAEGLEAKPGVKLAFPVETNMVFVRL-PESAIEALRLAGALFYRGVLIGAH---GEIVRFVTSWATSEEDVDELVA  335 (342)
T ss_pred             HHHHHHHhhhhcCCceeccCCcccEEEEEC-ChHHHHHHHhhchhheeeeeccCC---CceEEEEeeccCCHHHHHHHHH
Confidence            688888888854343222         222 211 22333444455666666532   2579999999999999999999


Q ss_pred             HHHHHH
Q psy11784        260 TLNRIF  265 (284)
Q Consensus       260 ~l~~~l  265 (284)
                      .+++++
T Consensus       336 ~~~~~~  341 (342)
T COG2008         336 AIKALL  341 (342)
T ss_pred             HHHHhh
Confidence            887764

>PRK08637 hypothetical protein; Provisional

Probab=99.12  E-value=7e-09  Score=96.12  Aligned_cols=186  Identities=15%  Similarity=0.090  Sum_probs=116.0

Q ss_pred             HHHHHHHHHhc-CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHH-----hCCEEEEecccccCccccCcccc-cc-c
Q psy11784         77 AQAARNIMEAH-RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE-----IGGVVIADEIQCGMGRSGSHFWA-FQ-T  148 (284)
Q Consensus        77 ~~~l~~~i~~~-~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~-----~g~llI~DEv~tG~gr~G~~~~a-~~-~  148 (284)
                      ++++++.++.. .+....+++-.-++-.|. ..+++.+++|.++|++     |++++|.||+|..|-..++..-. .. .
T Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~-~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~  210 (388)
T PRK08637        132 TDALKEALQAAYNKGKVIVILNFPNNPTGY-TPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAAL  210 (388)
T ss_pred             HHHHHHHHHhhccCCCEEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHh
Confidence            66777776521 222333433323555664 6799999999999886     99999999999887444421101 11 1


Q ss_pred             cCCCCcE--E---Eeccccc-CCcceeEEEec------HHHHHhch------------h------------h------h-
Q psy11784        149 QGAVPDI--I---TVGKPMG-NGMPIGAVITS------RKIAESLN------------C------------L------D-  185 (284)
Q Consensus       149 ~g~~pDi--v---~~sK~l~-~G~p~gav~~~------~~i~~~~~------------~------------l------~-  185 (284)
                      .+..+.+  +   ++||.++ .|+++|+++..      +++++.+.            .            +      + 
T Consensus       211 ~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~  290 (388)
T PRK08637        211 ANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKE  290 (388)
T ss_pred             hcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHH
Confidence            1222332  2   5899866 58999999854      45444331            0            1      1 


Q ss_pred             ------hHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEcC
Q psy11784        186 ------DNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLPA  246 (284)
Q Consensus       186 ------~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p~  246 (284)
                            .++++.+.+.+.|++.            .|+++++.+.  .....++++.|+ ++||.+.+.  ..+.+|+...
T Consensus       291 ~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~--~~~~~~l~~~l~~~~gv~~~~~--~~~~iRi~~~  366 (388)
T PRK08637        291 KQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLK--GVDAEELRVHLLEKYGIGTIAL--NETDLRIAFS  366 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCC--hHHHHHHHHHHhhhcceEEEec--cCCceEEEee
Confidence                  2333333444444321            3556666662  234678889886 679988753  3568999765


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q psy11784        247 MCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       247 l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      . .+++++++++++|.++++.+
T Consensus       367 ~-~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        367 C-VEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             c-CCHHHHHHHHHHHHHHHHhc
Confidence            4 68999999999999988754

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.12  E-value=2.4e-09  Score=97.38  Aligned_cols=157  Identities=15%  Similarity=0.121  Sum_probs=102.4

Q ss_pred             eEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc-ccccCCCCcEEEeccccc-CCccee
Q psy11784         92 ATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA-FQTQGAVPDIITVGKPMG-NGMPIG  169 (284)
Q Consensus        92 aavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a-~~~~g~~pDiv~~sK~l~-~G~p~g  169 (284)
                      .++++-.-++-.|... +++.+++|   + ++++++|.||+|..|.  +..... ...+.-.--+-+|||.++ .|+++|
T Consensus       140 ~~i~i~nP~NPTG~~~-s~~~l~~l---~-~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG  212 (335)
T PRK14808        140 DVVFIPNPNNPTGHVF-EREEIERI---L-KTGAFVALDEAYYEFH--GESYVDLLKKYENLAVIRTFSKAFSLAAQRIG  212 (335)
T ss_pred             CEEEEeCCCCCCCCCc-CHHHHHHH---H-hcCCEEEEECchhhhc--CCchHHHHHhCCCEEEEEechhhccCcccceE
Confidence            4454433344466655 55555444   4 5899999999998873  221111 111111112337899999 799999


Q ss_pred             EEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-------cCceeEEEEeccc
Q psy11784        170 AVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-------LHIFWCLILLSIT  214 (284)
Q Consensus       170 av~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-------~G~~~~i~~~~~~  214 (284)
                      ++++++++++.+..                            .+.+.+..+++.+.|++.       .|.++++.+. . 
T Consensus       213 ~~v~~~~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~g~f~~~~l~-~-  290 (335)
T PRK14808        213 YVVSSEKFIDAYNRVRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRITDSRGNFVFIFME-K-  290 (335)
T ss_pred             EEEeCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCeEEEEeCC-C-
Confidence            99999999887654                            113334455566666653       4556666663 2 


Q ss_pred             HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        215 YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       215 ~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      ....++.+.|.++||+++.   +.+.+|++   .-+.++.+++++.|++
T Consensus       291 ~~~~~~~~~l~~~Gi~V~~---~~~~~Ris---i~~~~~~~~~~~~l~~  333 (335)
T PRK14808        291 EEKERLLEHLRAKNIAVRS---FREGVRIT---IGKREENDMILKELEV  333 (335)
T ss_pred             ccHHHHHHHHHHCCeEEEE---CCCCeEEe---cCCHHHHHHHHHHHHh
Confidence            2346788999999999985   34689996   4578899999988864

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.12  E-value=9.8e-09  Score=97.41  Aligned_cols=177  Identities=12%  Similarity=0.089  Sum_probs=113.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEE-cceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .++|++++.+....  .||+ |++.++.++       +++|+++|++||++|++|++|. +|-.+..... ..++ ..|+
T Consensus       172 ~d~Le~~l~~~~pk--lIv~~~S~~s~~~D-------~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~-~p~~-~~Di  239 (475)
T PLN03226        172 YDKLEKKAMLFRPK--LIIAGASAYPRDWD-------YARMRKIADKVGALLMCDMAHI-SGLVAAQEAA-SPFE-YCDV  239 (475)
T ss_pred             HHHHHHHHhhcCCe--EEEEecCcCCCccC-------HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCC-CCCC-CCeE
Confidence            67888888644333  3444 766655433       7799999999999999999997 4333321111 1122 4787


Q ss_pred             E--EecccccCCcceeEEEecHHHH-----------Hh---chh---------------------------------hhh
Q psy11784        156 I--TVGKPMGNGMPIGAVITSRKIA-----------ES---LNC---------------------------------LDD  186 (284)
Q Consensus       156 v--~~sK~l~~G~p~gav~~~~~i~-----------~~---~~~---------------------------------l~~  186 (284)
                      +  |++|+|.|-. -|++++++++.           +.   +..                                 .++
T Consensus       240 v~~t~hK~L~GP~-Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~  318 (475)
T PLN03226        240 VTTTTHKSLRGPR-GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQ  318 (475)
T ss_pred             EEecCcccccCCC-ceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            7  4569996521 26666666432           11   111                                 236


Q ss_pred             HHHHHHHHHHHHHhccCc----------eeEEEEecccHHHHHHHHHHHHCCcEEeecC-------CCCCEEEE----Ec
Q psy11784        187 NRPSGKYLVRPLGINLHI----------FWCLILLSITYYLYRYTRRMKEAKIIVANEG-------EYGNVLLF----LP  245 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~~G~----------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~lr~----~p  245 (284)
                      +.++.++|.+.|++. |+          +..+++.+......++.+.|.+.||++....       .....+|+    ..
T Consensus       319 ~~~na~~L~~~L~~~-G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt  397 (475)
T PLN03226        319 VKANAAALANRLMSK-GYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMT  397 (475)
T ss_pred             HHHHHHHHHHHHHhC-CCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHH
Confidence            677888888888774 32          3334443333345667788889999987431       12356887    45


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q psy11784        246 AMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       246 ~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      ...++++|++++.+.|.++++.
T Consensus       398 ~~g~~~~d~~~ia~~i~~~~~~  419 (475)
T PLN03226        398 SRGLVEKDFEKVAEFLHRAVTI  419 (475)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHH
Confidence            6678999999999999999984

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.09  E-value=2.6e-09  Score=102.00  Aligned_cols=90  Identities=16%  Similarity=0.258  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEE-cceecCCCcccCChhHHHHHHHHHHH--hCCEEEEecccccCccccCccccccccCCCC
Q psy11784         77 AQAARNIMEAHRDNIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHE--IGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                      .+++++++.   +++.+|++ .| .+-.|. +.+++.+++|.++|++  +|+++|.||+|..|..  . +....  ...|
T Consensus       231 ~~~l~~~~~---~~tkai~l~nP-~NPTG~-v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~-~~s~~--~~~~  300 (527)
T PRK09275        231 DSELEKLRD---PSIKALFLVNP-SNPPSV-AMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD--D-FRSLF--AVLP  300 (527)
T ss_pred             HHHHHhhcC---CCCCEEEEeCC-cCCcCC-CCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--c-ccCHH--HhCC
Confidence            456666543   45666664 55 444564 6689999999999965  4999999999987732  2 11111  1123


Q ss_pred             c----EEEeccccc-CCcceeEEEecHH
Q psy11784        154 D----IITVGKPMG-NGMPIGAVITSRK  176 (284)
Q Consensus       154 D----iv~~sK~l~-~G~p~gav~~~~~  176 (284)
                      +    +.+|||.++ .|+++|+++++++
T Consensus       301 ~~~I~v~SfSK~f~mtG~RlG~i~~~~~  328 (527)
T PRK09275        301 YNTILVYSFSKYFGATGWRLGVIALHED  328 (527)
T ss_pred             CCEEEEeehhhhccCcHhHHhhhhcCch
Confidence            3    237899998 6999999999876

>PLN02242 methionine gamma-lyase

Probab=99.08  E-value=1.6e-08  Score=94.68  Aligned_cols=172  Identities=13%  Similarity=0.119  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhcCC-CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~-~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+.+++.++   + .+.+|++|...+..|.+.+    +++|.++|++||+++|+||+|+.+ ....     ..+|  .|+
T Consensus       152 ~e~l~~~i~---~~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~-~~~~-----~~~g--~di  216 (418)
T PLN02242        152 LEAVKKAVV---PGKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPM-VLSP-----ARLG--ADV  216 (418)
T ss_pred             HHHHHHhcC---cCCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCcc-CCCH-----HHcC--CcE
Confidence            566666664   3 4789999988888888776    999999999999999999999744 2211     1223  465


Q ss_pred             E--EecccccC-Ccc-eeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        156 I--TVGKPMGN-GMP-IGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       156 v--~~sK~l~~-G~p-~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +  +++|.+++ |.+ .|++++++++++.+..                               +++.+++++++.+.|++
T Consensus       217 vv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~  296 (418)
T PLN02242        217 VVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKE  296 (418)
T ss_pred             EEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence            5  67899986 566 5888888877665431                               34567777888888876


Q ss_pred             c---------------------------cCceeEEEEecccHHHHHHHHHHHHC----CcEEeecC--------------
Q psy11784        201 N---------------------------LHIFWCLILLSITYYLYRYTRRMKEA----KIIVANEG--------------  235 (284)
Q Consensus       201 ~---------------------------~G~~~~i~~~~~~~~~~~~~~~l~~~----Gv~~~~~~--------------  235 (284)
                      .                           .|.|+++++. ..+.+.+|++.+.--    .+.+..++              
T Consensus       297 ~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~-~~~~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~  375 (418)
T PLN02242        297 LGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMD-TEERANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSS  375 (418)
T ss_pred             CCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEEC-CHHHHHHHHHHhhcccccceeeecCCCCCceeeCCCccccc
Confidence            5                           1456777774 345566777776511    11111110              


Q ss_pred             -----------CCCCEEEEEcCCCCCHH-HHHHHHHHHHHHHHHH
Q psy11784        236 -----------EYGNVLLFLPAMCLTTE-NVLFIVSTLNRIFTSL  268 (284)
Q Consensus       236 -----------~~~~~lr~~p~l~~t~~-~id~~~~~l~~~l~~~  268 (284)
                                 ...+.+|++.    .-| +.|.+++-|+++|+.+
T Consensus       376 ~~~~~~~~~~gi~~~liRlsv----GlE~~~~dli~dl~~al~~~  416 (418)
T PLN02242        376 ELDPEEKAAAGISPGLVRMSV----GYTGTLEQRWSQFEKALSAM  416 (418)
T ss_pred             cCCHHHHHhcCCCCCeEEEEe----cCCCCHHHHHHHHHHHHHHh
Confidence                       0124677743    335 3788888888888765

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.07  E-value=2.1e-08  Score=94.05  Aligned_cols=83  Identities=19%  Similarity=0.352  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +++.+|++|+..+..|.+.+    +++|.++|++||+++|+||++. .+...      .......|++
T Consensus       133 ~e~le~ai~---~~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a-~~~~~------~p~~~gaDiv  198 (425)
T PRK06084        133 IAALEALID---ERTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVA-TPVLC------RPFEHGADIV  198 (425)
T ss_pred             HHHHHHHhc---cCCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC------ChhhcCCCEE
Confidence            567777775   35789999999888898777    8999999999999999999996 21111      2223347777


Q ss_pred             --EecccccC-CcceeEEEe
Q psy11784        157 --TVGKPMGN-GMPIGAVIT  173 (284)
Q Consensus       157 --~~sK~l~~-G~p~gav~~  173 (284)
                        +++|.++| |.++|++++
T Consensus       199 v~S~tK~l~G~g~~~gG~v~  218 (425)
T PRK06084        199 VHSLTKYIGGHGTSIGGIVV  218 (425)
T ss_pred             EECchhcccccccceeEEEE
Confidence              56799987 566666555

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.06  E-value=1.3e-08  Score=94.58  Aligned_cols=176  Identities=13%  Similarity=0.140  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +++.+|++|...+..|.+.+    +++|.++|++||+++|+|+++..+ ....      ......|++
T Consensus       139 ~e~l~~~i~---~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~-~~~~------~l~~~~Div  204 (398)
T PRK08249        139 HEQIEAEIA---KGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP-INQN------PLALGADLV  204 (398)
T ss_pred             HHHHHHhcC---CCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC------chhhCCCEE
Confidence            456666664   45788999977777888777    999999999999999999998733 1111      112346666


Q ss_pred             --EecccccC-Ccce-eEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        157 --TVGKPMGN-GMPI-GAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       157 --~~sK~l~~-G~p~-gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                        +++|.++| |-.+ |++++++++++.+..                           +++..++.+.+.+.|++.    
T Consensus       205 v~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~  284 (398)
T PRK08249        205 IHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVE  284 (398)
T ss_pred             eccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence              46799986 4444 667778888776543                           334555666666666653    


Q ss_pred             ----------------------cCceeEEEEecccHHHHHHHHHHH--HCCc--------EEeec---------------
Q psy11784        202 ----------------------LHIFWCLILLSITYYLYRYTRRMK--EAKI--------IVANE---------------  234 (284)
Q Consensus       202 ----------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv--------~~~~~---------------  234 (284)
                                            .|.++.+++......+.+|++.|.  ..++        +..|.               
T Consensus       285 ~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~  364 (398)
T PRK08249        285 AVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSHVENTLEERAAL  364 (398)
T ss_pred             EEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCCCCCceeeCCcccccccCCHHHHHhc
Confidence                                  466888888533344556666553  2232        11111               


Q ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        235 GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       235 ~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      +...+.|||+.-    -|+.+.+++-|+++++.+++
T Consensus       365 gi~~~liR~svG----lE~~~dl~~dl~~al~~~~~  396 (398)
T PRK08249        365 GIPEGLVRISVG----IEDTEDLIADLEQAFAHLES  396 (398)
T ss_pred             CCCCCeEEEEec----cCCHHHHHHHHHHHHHHhhh
Confidence            112357888543    36788888888888877654

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.06  E-value=7.9e-09  Score=96.74  Aligned_cols=85  Identities=19%  Similarity=0.240  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++++|++|...+..|.+.+    +++|.++|++||+++|+||++. .+.      ........+|++
T Consensus       132 ~~~l~~~l~---~~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~-~~~------~~~~l~~g~Div  197 (418)
T TIGR01326       132 PEEFEKAID---ENTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA-TPY------LCRPIDHGADIV  197 (418)
T ss_pred             HHHHHHhcC---cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-hhh------cCCchhcCCeEE
Confidence            566777664   45788999988777787776    9999999999999999999985 211      112223347887


Q ss_pred             --EecccccC-CcceeEEEecH
Q psy11784        157 --TVGKPMGN-GMPIGAVITSR  175 (284)
Q Consensus       157 --~~sK~l~~-G~p~gav~~~~  175 (284)
                        +++|.+++ |.++|++++++
T Consensus       198 v~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       198 VHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             EECccccccCCccceEEEEEec
Confidence              57899997 79999988853

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.06  E-value=3.1e-09  Score=97.23  Aligned_cols=161  Identities=14%  Similarity=0.127  Sum_probs=106.1

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE---EEeccccc-CC
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI---ITVGKPMG-NG  165 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi---v~~sK~l~-~G  165 (284)
                      ++.+|++...++-.|.+. +.+.+++|.+.|+  ++++|+||+|..|..... .  .......+.+   -+|||.++ .|
T Consensus       147 ~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~~~~s-~--~~~~~~~~~~iv~~S~SK~~~l~G  220 (354)
T PRK04635        147 GAKLVFICNPNNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFCPEYS-V--ADLLASYPNLVVLRTLSKAFALAG  220 (354)
T ss_pred             CCCEEEEeCCCCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhccCcc-h--HHHHhhCCCEEEEechHHHhhhhH
Confidence            456666666677778765 5666666666655  499999999987732111 1  1111112333   37899998 78


Q ss_pred             cceeEEEecHHHHHhchh------------------h------------hhHHHHHHHHHHHHHhc--------cCceeE
Q psy11784        166 MPIGAVITSRKIAESLNC------------------L------------DDNRPSGKYLVRPLGIN--------LHIFWC  207 (284)
Q Consensus       166 ~p~gav~~~~~i~~~~~~------------------l------------~~~~~~~~~l~~~L~~~--------~G~~~~  207 (284)
                      +++|++++++++++.+..                  +            +++++..+++.+.|+++        .|.++.
T Consensus       221 lRlG~~i~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~  300 (354)
T PRK04635        221 ARCGFTLANEELIEILMRVIAPYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNGNYVL  300 (354)
T ss_pred             HHHhhhhCCHHHHHHHHhhcCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCcEEE
Confidence            999999999988876543                  1            12344455666667653        344555


Q ss_pred             EEEecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        208 LILLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       208 i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      +.+ +   ...++.+.|.++||.++..+.  .++.+|++.   .+++|++.++++|++
T Consensus       301 ~~~-~---~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~---~~~e~~~~l~~al~~  351 (354)
T PRK04635        301 AKF-D---DVDAVFKALWDAGIVARAYKDPRLANCIRFSF---SNRAETDKLIGLIRN  351 (354)
T ss_pred             EEC-C---CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEe---CCHHHHHHHHHHHHH
Confidence            544 2   245788889999999986532  246899973   478999999988864

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.05  E-value=1.4e-08  Score=93.82  Aligned_cols=172  Identities=15%  Similarity=0.121  Sum_probs=110.2

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT  157 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~  157 (284)
                      +.+++.+.   +++.+|++|...+..|...+    +++|.++|++||+++|+||+|+ .|-.+.      ......|+++
T Consensus       126 e~l~~~i~---~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a-~g~~~~------pl~~gaDivv  191 (377)
T TIGR01324       126 EDIATLIQ---PNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWA-AGLLFK------PLEHGVDISI  191 (377)
T ss_pred             HHHHHhcC---CCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc-cccccC------ccccCceEEE
Confidence            44555553   46889999988888777666    9999999999999999999997 222222      1223468876


Q ss_pred             e--cccccC--CcceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        158 V--GKPMGN--GMPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       158 ~--sK~l~~--G~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      .  +|.++|  +.-.|+++++++..+.+..                           +++..++...+.+.|++.     
T Consensus       192 ~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~  271 (377)
T TIGR01324       192 QAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVAR  271 (377)
T ss_pred             ecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCE
Confidence            5  799986  2556888888877665432                           234444555555555543     


Q ss_pred             ---------------------cCceeEEEEec-ccHHHHHHHHHHHHCCcEEeecC---------------------CCC
Q psy11784        202 ---------------------LHIFWCLILLS-ITYYLYRYTRRMKEAKIIVANEG---------------------EYG  238 (284)
Q Consensus       202 ---------------------~G~~~~i~~~~-~~~~~~~~~~~l~~~Gv~~~~~~---------------------~~~  238 (284)
                                           .|.|+.+++.. ..+.+.+|.+.|.-.++-+.-++                     ..+
T Consensus       272 v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~~~~~~~~~~~~~~~  351 (377)
T TIGR01324       272 VLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCNQPELGHRPNIKRNLEG  351 (377)
T ss_pred             EECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecCCCCCCHHHHHhccCCC
Confidence                                 46788888853 33456778877765443322111                     112


Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        239 NVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       239 ~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +.|||+.-+    |+.+.+++-|+++++.
T Consensus       352 ~liR~svGl----E~~~dl~~dl~~al~~  376 (377)
T TIGR01324       352 PLIRVHIGL----ENVDDLKADLKAGFEA  376 (377)
T ss_pred             CEEEEEeCC----CCHHHHHHHHHHHHhc
Confidence            456774333    5566677777666653

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.04  E-value=2.5e-08  Score=94.10  Aligned_cols=170  Identities=21%  Similarity=0.289  Sum_probs=108.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEE--ecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIA--DEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~--DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+++++.+.   +++++|++... +..|.+.+    +++|.++|+++|+++|+  |.+..|+  ...    .  .....|
T Consensus       194 ~~~l~~~i~---~~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~--~~~----~--~~~~~D  257 (447)
T PRK00451        194 LEALEAAVD---DDTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL--LKP----P--GEYGAD  257 (447)
T ss_pred             HHHHHHhcC---CCeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc--CCC----c--ccCCCC
Confidence            577777664   46778877754 66787766    99999999999999998  6543221  110    0  123456


Q ss_pred             EEEe-----ccccc-CCcceeEEEecHHHHHhc----------------------------hh-----------------
Q psy11784        155 IITV-----GKPMG-NGMPIGAVITSRKIAESL----------------------------NC-----------------  183 (284)
Q Consensus       155 iv~~-----sK~l~-~G~p~gav~~~~~i~~~~----------------------------~~-----------------  183 (284)
                      +++.     ||... +|..+|++.+++++.+.+                            +.                 
T Consensus       258 ~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  337 (447)
T PRK00451        258 IVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALA  337 (447)
T ss_pred             EEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHH
Confidence            6644     34433 345577777777666552                            00                 


Q ss_pred             ----------------hhhHHHHHHHHHHHHHhccCc------eeE---EEEecccHHHHHHHHHHHHCCcEEe-ecCC-
Q psy11784        184 ----------------LDDNRPSGKYLVRPLGINLHI------FWC---LILLSITYYLYRYTRRMKEAKIIVA-NEGE-  236 (284)
Q Consensus       184 ----------------l~~~~~~~~~l~~~L~~~~G~------~~~---i~~~~~~~~~~~~~~~l~~~Gv~~~-~~~~-  236 (284)
                                      .++..++.+++.++|+++.|+      ++.   +.+ +  ....+++++|.++|+... +..+ 
T Consensus       338 aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~-~--~~~~~~~~~L~~~gi~~~~~~~~~  414 (447)
T PRK00451        338 AAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRL-P--KPAEEVNEALLEKGILGGYDLGRY  414 (447)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEec-C--CCHHHHHHHHHhcCCCCCcccccc
Confidence                            224556667777777764121      111   222 1  235789999999988743 1111 


Q ss_pred             ---CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        237 ---YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       237 ---~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                         ..+.+|++++...|+++++++++.|++++
T Consensus       415 ~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        415 YPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             cCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence               13689999998899999999999998754

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.04  E-value=2.2e-08  Score=92.91  Aligned_cols=173  Identities=11%  Similarity=0.096  Sum_probs=111.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++|...+..|.+.+    +++|.++|+++|+++|+||++.- +..+.      ..+...|++
T Consensus       134 ~e~l~~~i~---~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a~-~~~~~------~~~~g~Div  199 (391)
T TIGR01328       134 PEEVKAHIK---DNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFAT-PMLTN------PVALGVDVV  199 (391)
T ss_pred             HHHHHHhhc---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCch-hccCC------chhcCCCEE
Confidence            455666554   45789999988887887776    99999999999999999999862 22222      122346776


Q ss_pred             --EecccccC-Ccc-eeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        157 --TVGKPMGN-GMP-IGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       157 --~~sK~l~~-G~p-~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                        +++|.+++ |.+ .|++++++++++.+..                             +++..++.+++.+.|+..  
T Consensus       200 v~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~  279 (391)
T TIGR01328       200 VHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPA  279 (391)
T ss_pred             EccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence              45799986 555 4777788887765542                             234555666777777654  


Q ss_pred             ------------------------cCceeEEEEecccHHHHHHHHHHH--HCCcEE--------eec-------------
Q psy11784        202 ------------------------LHIFWCLILLSITYYLYRYTRRMK--EAKIIV--------ANE-------------  234 (284)
Q Consensus       202 ------------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv~~--------~~~-------------  234 (284)
                                              .|.++.+++.+..+.+.+|++.|.  ..+.-+        .|.             
T Consensus       280 v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~  359 (391)
T TIGR01328       280 VEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEERE  359 (391)
T ss_pred             ccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcceEecCCCCCcccCcCCCccccccCCHHHHH
Confidence                                    366888888533344556666553  112111        110             


Q ss_pred             --CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        235 --GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       235 --~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                        +...+.+||+.-+    |+.+.+++-|+++++.
T Consensus       360 ~~gi~~~liR~svGl----E~~~dl~~dl~~al~~  390 (391)
T TIGR01328       360 AAGITDGMIRLSVGL----EDADDLIADLKQALDA  390 (391)
T ss_pred             hcCCCCCeEEEEeCc----CCHHHHHHHHHHHHhh
Confidence              0113567885433    6688888888888764

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.04  E-value=4.6e-09  Score=100.19  Aligned_cols=90  Identities=12%  Similarity=0.251  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhcCCCeeEEE-EcceecCCCcccCChhHHHHHHHHHHHh--CCEEEEecccccCccccCccccccccCCCC
Q psy11784         77 AQAARNIMEAHRDNIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEI--GGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                      .+++++++.   +++.+|+ +.| .+-.|. ..+++.+++|.++|++|  ++++|.||+|..|..  . +.+.  ....|
T Consensus       230 ~~~l~~~~~---~~~kai~l~nP-~NPTG~-vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~-~~sl--~~~~~  299 (521)
T TIGR03801       230 DKELEKLRD---PSIKALFVVNP-SNPPSV-AMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--D-FRSL--FAELP  299 (521)
T ss_pred             HHHHHHhcC---CCCcEEEEeCC-CCCCCC-CCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--c-ccch--hhhCC
Confidence            455665443   4566665 566 344554 66899999999999987  999999999987632  2 1111  11234


Q ss_pred             c----EEEeccccc-CCcceeEEEecHH
Q psy11784        154 D----IITVGKPMG-NGMPIGAVITSRK  176 (284)
Q Consensus       154 D----iv~~sK~l~-~G~p~gav~~~~~  176 (284)
                      |    +.+|||.++ .|+++|+++++++
T Consensus       300 ~~vI~v~SfSK~fg~~G~RlG~i~~~~~  327 (521)
T TIGR03801       300 YNTIGVYSFSKYFGATGWRLGTIALHKD  327 (521)
T ss_pred             CCEEEEEcchhhccCchhhhhhhhcCch
Confidence            3    236899997 6899999999754

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.04  E-value=3.8e-08  Score=99.95  Aligned_cols=238  Identities=17%  Similarity=0.202  Sum_probs=142.8

Q ss_pred             cHHHHHHHHHHHcc---C--CccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHH
Q psy11784          2 EANDLALQLARAYT---G--RQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKY   76 (284)
Q Consensus         2 eA~e~AlklAr~~~---~--r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (284)
                      .++.+++..+|.|.   |  ++.++....+=||....+....+.+          +..+|....  +  +-|        
T Consensus       569 ~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~----------vv~v~~d~~--G--~iD--------  626 (954)
T PRK05367        569 QGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMK----------VVVVACDEN--G--NID--------  626 (954)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCE----------EEEECCCCC--C--CcC--------
Confidence            34557777778763   2  2345556677777655443332221          222332211  1  111        


Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +++|++.++.+..++++|++---...|+...+    +++|.++|+++|+++++|.++.+- -.+.   . ..-..-.|++
T Consensus       627 ~~~L~~~i~~~~~~la~V~it~pst~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~a-l~~l---~-~pg~~GADi~  697 (954)
T PRK05367        627 LDDLRAKAEEHADNLAAIMITYPSTHGVFEET----IREICEIVHEHGGQVYLDGANMNA-QVGL---A-RPGDIGADVS  697 (954)
T ss_pred             HHHHHHHHhccCCCeEEEEEEcCCCCeeecCC----HHHHHHHHHHcCCEEEEECcChhh-ccCC---C-ChhhcCCCEE
Confidence            67888888754456777655432222333345    999999999999999999999621 1111   1 0112336888


Q ss_pred             Eec--cccc----CC-cceeEEEecHHHHHhchh----------------------------------------hh----
Q psy11784        157 TVG--KPMG----NG-MPIGAVITSRKIAESLNC----------------------------------------LD----  185 (284)
Q Consensus       157 ~~s--K~l~----~G-~p~gav~~~~~i~~~~~~----------------------------------------l~----  185 (284)
                      +++  |.++    +| -.+|.+.+++.+...+..                                        +.    
T Consensus       698 ~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~  777 (954)
T PRK05367        698 HLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATE  777 (954)
T ss_pred             EecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence            776  9885    23 336666666554322111                                        11    


Q ss_pred             hHHHHHHHHHHHHHhccCc---------ee--EEEEe--cc--cHHHHHHHHHHHHCCcEEeecC-CCCCEEEEEcCCCC
Q psy11784        186 DNRPSGKYLVRPLGINLHI---------FW--CLILL--SI--TYYLYRYTRRMKEAKIIVANEG-EYGNVLLFLPAMCL  249 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~~G~---------~~--~i~~~--~~--~~~~~~~~~~l~~~Gv~~~~~~-~~~~~lr~~p~l~~  249 (284)
                      +...+.+|+.++|.+....         +.  .+++.  +.  ......+.++|.+.|+...... +..+.+++.|.-..
T Consensus       778 ~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~  857 (954)
T PRK05367        778 VAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESE  857 (954)
T ss_pred             HHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecC
Confidence            2335777888888764111         11  11221  11  1346789999999999876521 23678999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHhh
Q psy11784        250 TTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       250 t~~~id~~~~~l~~~l~~~~~  270 (284)
                      |++|||++++++.++.+++.+
T Consensus       858 s~~elDr~~~al~~i~~e~~~  878 (954)
T PRK05367        858 SKAELDRFCDAMIAIRAEIDE  878 (954)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888765

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.04  E-value=3.2e-08  Score=89.92  Aligned_cols=180  Identities=14%  Similarity=0.063  Sum_probs=128.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +++|++.|+   +++..|-+=-+.++-|.+.|    +++|.++|+++|+++.+|-||+ +|+.     ..+......|++
T Consensus       131 ~e~L~~al~---~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gki-----pi~~~~~~vD~l  197 (386)
T COG1104         131 LEQLEEALR---PDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKI-----PIDLEELGVDLL  197 (386)
T ss_pred             HHHHHHhcC---CCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCce-----eccccccCcceE
Confidence            678888876   66888888888999999999    9999999999999999999997 6553     223333348999


Q ss_pred             Eecc-cccCCcceeEEEecHHHHHh-chh-----------------------------------hhhHHHHHHHHHHHHH
Q psy11784        157 TVGK-PMGNGMPIGAVITSRKIAES-LNC-----------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       157 ~~sK-~l~~G~p~gav~~~~~i~~~-~~~-----------------------------------l~~~~~~~~~l~~~L~  199 (284)
                      +||- .++|-=.+|+++.++.+.-. +..                                   ..++..+.++|.+.|.
T Consensus       198 s~SaHK~~GpkGiGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~  277 (386)
T COG1104         198 SFSAHKFGGPKGIGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLL  277 (386)
T ss_pred             EeehhhccCCCceEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8872 23332357888876644211 110                                   2367778888888888


Q ss_pred             hc------cCc-------eeEEEEecccHHHHHHHHHHHHCCcEEeecCC---------------------CCCEEEEEc
Q psy11784        200 IN------LHI-------FWCLILLSITYYLYRYTRRMKEAKIIVANEGE---------------------YGNVLLFLP  245 (284)
Q Consensus       200 ~~------~G~-------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------~~~~lr~~p  245 (284)
                      +.      .|.       .+.+.+  ....+..+...|-.+||.+..++.                     -...|||+.
T Consensus       278 ~~~p~~~~~g~~~~rlP~~~~~~f--~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~  355 (386)
T COG1104         278 EIIPDVYLNGDDEPRLPNILNFSF--PGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSL  355 (386)
T ss_pred             hcCCcEEEcCCcccCCCCeEEEEe--CCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEc
Confidence            64      111       122222  123466677777788999976521                     115799999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        246 AMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       246 ~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      .-..|++|+|.+++.|.++++.+++.
T Consensus       356 g~~tt~eei~~~~~~l~~~i~~lr~~  381 (386)
T COG1104         356 GRFTTEEEIDAAAEALKEIIKRLREL  381 (386)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999988653

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.03  E-value=9e-09  Score=95.39  Aligned_cols=173  Identities=16%  Similarity=0.132  Sum_probs=116.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++.+|++|...+..|.+.+    +++|.++|+++|+++|+||+++. +-.+. ..   ..|  .|++
T Consensus       136 ~~~l~~~i~---~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a~-~~~~~-pl---~~g--~Div  201 (386)
T PRK06767        136 EADIENKIR---PNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFCS-PYLQR-PL---ELG--CDAV  201 (386)
T ss_pred             HHHHHHhhC---cCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCcc-cccCC-ch---hcC--CcEE
Confidence            455666554   45788999988888888777    89999999999999999999852 11222 11   123  4776


Q ss_pred             E--ecccccC-Ccce-eEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 T--VGKPMGN-GMPI-GAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~--~sK~l~~-G~p~-gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +  ++|.++| |.++ |+++++++.++.+..                            +++.+++.+++.+.|++.   
T Consensus       202 ~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v  281 (386)
T PRK06767        202 VHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAV  281 (386)
T ss_pred             EecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            4  5699987 5665 788888876655321                            346667778888888765   


Q ss_pred             -----------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-------------------------CCC
Q psy11784        202 -----------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-------------------------YGN  239 (284)
Q Consensus       202 -----------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------------------~~~  239 (284)
                                       .|-++.+++....+...+|.+.|...++.+.-++.                         ..+
T Consensus       282 ~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~  361 (386)
T PRK06767        282 EGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDN  361 (386)
T ss_pred             cEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCC
Confidence                             24567788743335677888888776655543211                         124


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        240 VLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       240 ~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      .+||+.-+    |+.+.+++-|+++++.
T Consensus       362 l~R~svGl----E~~~dl~~dl~~al~~  385 (386)
T PRK06767        362 LIRLSVGL----ESWEDIVSDLEQALKK  385 (386)
T ss_pred             eEEEEecc----CCHHHHHHHHHHHHhh
Confidence            67775433    5677777777777653

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.03  E-value=2.5e-08  Score=93.63  Aligned_cols=83  Identities=17%  Similarity=0.295  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++|...+..|.+.+    +++|.++|++||+++|+|++++.    +   +........+|++
T Consensus       138 ~~~l~~ai~---~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~----~---~~~~pl~~gaDiv  203 (427)
T PRK05994        138 PASFERAIT---PRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS----P---YLIRPIEHGADIV  203 (427)
T ss_pred             HHHHHHhcC---cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCccc----c---ccCCccccCCcEE
Confidence            466676664   46889999998888888877    99999999999999999999962    1   1223334568887


Q ss_pred             E--ecccccC-CcceeEEEe
Q psy11784        157 T--VGKPMGN-GMPIGAVIT  173 (284)
Q Consensus       157 ~--~sK~l~~-G~p~gav~~  173 (284)
                      +  ++|.++| |-++|+++.
T Consensus       204 v~S~tK~lgg~~~~~gG~v~  223 (427)
T PRK05994        204 VHSLTKFLGGHGNSMGGIIV  223 (427)
T ss_pred             EEcCccccCCCCCcEEEEEE
Confidence            6  6699986 445565444

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.03  E-value=9.6e-08  Score=96.01  Aligned_cols=233  Identities=16%  Similarity=0.206  Sum_probs=147.9

Q ss_pred             HHHHHHHHcc-----CCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          6 LALQLARAYT-----GRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         6 ~AlklAr~~~-----~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +++..+|.|.     +++.++....+-||....+....+.+          +..+|...  .+.  -|        +++|
T Consensus       561 agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~----------Vv~V~~d~--~G~--iD--------le~L  618 (939)
T TIGR00461       561 AGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQ----------VVPVNCDQ--DGN--ID--------LVDL  618 (939)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCE----------EEEeccCC--CCC--cC--------HHHH
Confidence            3677777763     24556777899999775554333222          12233211  111  11        7889


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc-CccccCccccccccCCCCcEEEec
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG-MGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG-~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      ++.++.+++++++|++--.... |.+.++   +++|.++|+++|.++++|=++.. .+  +   .. ..-..-.|+++++
T Consensus       619 ~~~i~~~~~~taaV~iT~pst~-G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~--~---l~-~Pg~~GaDi~~~s  688 (939)
T TIGR00461       619 KNKAEQHGDELAAVMVTYPSTH-GVFEPT---IQHACDIVHSFGGQVYLDGANMNAQV--G---LT-SPGDLGADVCHLN  688 (939)
T ss_pred             HHHHhhcCCceEEEEEEeCCcC-ceeccc---HHHHHHHHHHcCCEEEEEecChhhCC--C---CC-CccccCCCEEEec
Confidence            9999865567888877543333 444322   89999999999999999988863 21  1   11 1122457998884


Q ss_pred             --cccc-----CCcceeEEEecHHHHHhchh--------------------------------------------hh---
Q psy11784        160 --KPMG-----NGMPIGAVITSRKIAESLNC--------------------------------------------LD---  185 (284)
Q Consensus       160 --K~l~-----~G~p~gav~~~~~i~~~~~~--------------------------------------------l~---  185 (284)
                        |+++     ||--+|.+.+++++...+..                                            +.   
T Consensus       689 ~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a  768 (939)
T TIGR00461       689 LHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKAS  768 (939)
T ss_pred             CCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHH
Confidence              9887     45557888888665433321                                            11   


Q ss_pred             -hHHHHHHHHHHHHHhc-----cC--ceeEEEEe----cc----cHHHHHHHHHHHHCCcEEeecC-CCCCEEEEEcCCC
Q psy11784        186 -DNRPSGKYLVRPLGIN-----LH--IFWCLILL----SI----TYYLYRYTRRMKEAKIIVANEG-EYGNVLLFLPAMC  248 (284)
Q Consensus       186 -~~~~~~~~l~~~L~~~-----~G--~~~~i~~~----~~----~~~~~~~~~~l~~~Gv~~~~~~-~~~~~lr~~p~l~  248 (284)
                       ..-.+..|+.++|.+.     .|  -.+.-++.    +.    .....++.++|++.|+...... +..+.+-+.|.-.
T Consensus       769 ~~ailnAnYl~~rL~~~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~  848 (939)
T TIGR00461       769 VVAILNANYMATRLKDHYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTES  848 (939)
T ss_pred             HHHHHHHHHHHHHhhccCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeecc
Confidence             3334667888888654     11  02122222    11    1347889999999999865432 2235788889999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhh
Q psy11784        249 LTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       249 ~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      .|++|||++++.+.++-+++.+
T Consensus       849 eskeelD~f~~al~~I~~e~~~  870 (939)
T TIGR00461       849 ESLEELDRFCDAMIAIKEEINA  870 (939)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887754

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.02  E-value=8.8e-09  Score=93.68  Aligned_cols=152  Identities=23%  Similarity=0.260  Sum_probs=98.4

Q ss_pred             EEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE---Eeccccc-CCccee
Q psy11784         94 LICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII---TVGKPMG-NGMPIG  169 (284)
Q Consensus        94 vi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv---~~sK~l~-~G~p~g  169 (284)
                      ++..| ++-.|...+    .++|.+++ ++++++|+||+|..|.. .. ...  .....+.++   +|||.++ .|+++|
T Consensus       145 ~~~~P-~NPtG~~~~----~~~l~~i~-~~~~~ii~De~y~~~~~-~~-~~~--~~~~~~~vi~l~S~SK~~~l~GlRiG  214 (337)
T PRK03967        145 FICSP-NNPTGNLQP----EEEILKVL-ETGKPVVLDEAYAEFSG-KS-LIG--LIDEYPNLILLRTFSKAFGLAGIRAG  214 (337)
T ss_pred             EEeCC-CCCCCCCCC----HHHHHHHH-hcCCEEEEECchhhhcc-cc-hHH--HHhhCCCEEEEecchHhhcchhhhhe
Confidence            34455 666776654    45666777 47999999999988731 12 111  111123333   6899999 899999


Q ss_pred             EEEecHHHHHhchh------------------h----------hhHHHHHHHHHHHHHhc----cCceeEEEEecccHHH
Q psy11784        170 AVITSRKIAESLNC------------------L----------DDNRPSGKYLVRPLGIN----LHIFWCLILLSITYYL  217 (284)
Q Consensus       170 av~~~~~i~~~~~~------------------l----------~~~~~~~~~l~~~L~~~----~G~~~~i~~~~~~~~~  217 (284)
                      ++++++++++.+..                  +          +...+..+.+.+.|.+.    .|.++++.+       
T Consensus       215 ~iv~~~~~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~-------  287 (337)
T PRK03967        215 YAIANEEIIDALYRIKPPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEYAYPSDANFLLLKL-------  287 (337)
T ss_pred             eeecCHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEEhH-------
Confidence            99999998877654                  1          12233334445555442    344554443       


Q ss_pred             HHHHHHHHHCCcEEeecC-CCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        218 YRYTRRMKEAKIIVANEG-EYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       218 ~~~~~~l~~~Gv~~~~~~-~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                       .+.+.|.++||.+.+.. ...+.+|+..   .+.++.+++++.|+++.+
T Consensus       288 -~~~~~l~~~gi~v~~~~~~~~~~~Ri~~---~~~~~~~~l~~~l~~~~~  333 (337)
T PRK03967        288 -DAYDYLLENGIVVRKLSGRLEGHIRVTV---GKREENDEFIKALKEIKE  333 (337)
T ss_pred             -HHHHHHHHCCEEEEeCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHH
Confidence             26788899999998653 2346899963   367888888888877654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.01  E-value=1.2e-07  Score=96.23  Aligned_cols=222  Identities=16%  Similarity=0.182  Sum_probs=145.0

Q ss_pred             ccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHHHHHHhcCCCeeEEEEc
Q psy11784         18 QNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICE   97 (284)
Q Consensus        18 ~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~vaavi~E   97 (284)
                      ++++....+=||.-.......+.+          +..+|...  .+  .-|        +++|++.++.+.+++++|++-
T Consensus       616 r~~vli~~~aH~sn~a~a~~~G~~----------vv~v~~d~--~G--~vD--------le~L~~~i~~~~~~ta~V~vt  673 (993)
T PLN02414        616 RNVCIIPVSAHGTNPASAAMCGMK----------IVVVGTDA--KG--NIN--------IEELRKAAEAHKDNLAALMVT  673 (993)
T ss_pred             CCEEEeCCCcCccCHHHHHHCCCE----------EEEeccCC--CC--CcC--------HHHHHHHHhccCCCeEEEEEE
Confidence            456777788888766554443222          12233321  11  111        788999998655679999888


Q ss_pred             ceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe--ccccc-----CCcceeE
Q psy11784         98 PVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV--GKPMG-----NGMPIGA  170 (284)
Q Consensus        98 pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~--sK~l~-----~G~p~ga  170 (284)
                      -....+|...+    +++|.++|+++|+++++|=+|.- +-.|.    ......-.|++++  .|+++     ||-.+|.
T Consensus       674 ~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~~-a~~~l----~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~  744 (993)
T PLN02414        674 YPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANMN-AQVGL----TSPGFIGADVCHLNLHKTFCIPHGGGGPGMGP  744 (993)
T ss_pred             CCCccccccch----HHHHHHHHHHcCCEEEEEecCHH-hccCc----CCccccCCCEEEecCCccCCcCcccCCCCeee
Confidence            77777888777    99999999999999999998861 11111    1111234788876  48775     2334777


Q ss_pred             EEecHHHHHhchh----------------------------------------------h----hhHHHHHHHHHHHHHh
Q psy11784        171 VITSRKIAESLNC----------------------------------------------L----DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       171 v~~~~~i~~~~~~----------------------------------------------l----~~~~~~~~~l~~~L~~  200 (284)
                      +.+++++...+..                                              +    ++...+..|++++|.+
T Consensus       745 l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~  824 (993)
T PLN02414        745 IGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEG  824 (993)
T ss_pred             EEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777766543221                                              2    1345567788888866


Q ss_pred             ccCc-------eeEEEEe---c-c----cHHHHHHHHHHHHCCcEEeecC-CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        201 NLHI-------FWCLILL---S-I----TYYLYRYTRRMKEAKIIVANEG-EYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       201 ~~G~-------~~~i~~~---~-~----~~~~~~~~~~l~~~Gv~~~~~~-~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      ..+.       .+.-++.   . .    ...+..+.++|++.|+...... +..+.+|+.|.-..|++|||++++++.++
T Consensus       825 ~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i  904 (993)
T PLN02414        825 HYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISI  904 (993)
T ss_pred             hCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHH
Confidence            5111       1111222   1 0    1345789999999999875422 24678999999999999999999999999


Q ss_pred             HHHHhh
Q psy11784        265 FTSLQM  270 (284)
Q Consensus       265 l~~~~~  270 (284)
                      .++..+
T Consensus       905 ~~e~~~  910 (993)
T PLN02414        905 REEIAD  910 (993)
T ss_pred             HHHHHH
Confidence            888764

>KOG0257|consensus

Probab=99.01  E-value=1.1e-09  Score=98.79  Aligned_cols=156  Identities=15%  Similarity=0.161  Sum_probs=104.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcc--cccc--ccCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHF--WAFQ--TQGAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~--~a~~--~~g~~  152 (284)
                      .+++|..+.   ..+.+|++..-.+-.|- +.+++.|++|.++|++||.++|.||||.-+-..|..+  +++.  .+..+
T Consensus       162 ~~~le~~~t---~kTk~Ii~ntPhNPtGk-vfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ert  237 (420)
T KOG0257|consen  162 PEELESKIT---EKTKAIILNTPHNPTGK-VFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERT  237 (420)
T ss_pred             hHHHHhhcc---CCccEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheE
Confidence            567777765   45677777655555665 5699999999999999999999999998654455311  2221  11122


Q ss_pred             CcEEEecccccC-CcceeEEEecHHHHHhchh---------------------------------------hhhHHHHHH
Q psy11784        153 PDIITVGKPMGN-GMPIGAVITSRKIAESLNC---------------------------------------LDDNRPSGK  192 (284)
Q Consensus       153 pDiv~~sK~l~~-G~p~gav~~~~~i~~~~~~---------------------------------------l~~~~~~~~  192 (284)
                      -.+-.+||.++- ||++||+++.+.++.....                                       .+.++++.+
T Consensus       238 itvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krd  317 (420)
T KOG0257|consen  238 ITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRD  317 (420)
T ss_pred             EEeccccceeeeeeeeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHH
Confidence            334468999995 9999999998888776544                                       114566777


Q ss_pred             HHHHHHHhc--------cCceeEEEEe-----cc-cH-----HHHHHHHHHH-HCCcEEeecCC
Q psy11784        193 YLVRPLGIN--------LHIFWCLILL-----SI-TY-----YLYRYTRRMK-EAKIIVANEGE  236 (284)
Q Consensus       193 ~l~~~L~~~--------~G~~~~i~~~-----~~-~~-----~~~~~~~~l~-~~Gv~~~~~~~  236 (284)
                      .|.+.|.++        .+.++..++.     +. ++     ....+++.+. +.|+.+.|...
T Consensus       318 il~k~L~~lg~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~sa  381 (420)
T KOG0257|consen  318 ILAKALEELGLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSA  381 (420)
T ss_pred             HHHHHHHhcCCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchh
Confidence            788888876        3445666765     11 01     2334666666 55887776543

>PRK06460 hypothetical protein; Provisional

Probab=99.00  E-value=1.4e-08  Score=93.70  Aligned_cols=165  Identities=15%  Similarity=0.141  Sum_probs=110.0

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE--EecccccC--
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII--TVGKPMGN--  164 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv--~~sK~l~~--  164 (284)
                      +++.+|++|...+..|.+.+    +++|.++|++||+++|+||+|..+ ....   .. ..+  .|++  +++|.++|  
T Consensus       129 ~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~-~~~~---~l-~~~--~divv~S~sK~l~G~~  197 (376)
T PRK06460        129 KRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTP-INQK---PL-ELG--ADIVVHSASKFLAGHN  197 (376)
T ss_pred             CCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC---hh-hcC--CCEEEeecceeccCCC
Confidence            45789999999998898887    789999999999999999998632 1111   11 122  5665  67899975  


Q ss_pred             CcceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc----------------
Q psy11784        165 GMPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN----------------  201 (284)
Q Consensus       165 G~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~----------------  201 (284)
                      +...|++++++++++.+..                           +++..++.+++.+.|++.                
T Consensus       198 ~~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~  277 (376)
T PRK06460        198 DVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVD  277 (376)
T ss_pred             CceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCcc
Confidence            2568899999988877653                           335666677777777753                


Q ss_pred             ----------cCceeEEEEecccHHHHHHHHHHH--HCCc--------EEeec---------------CCCCCEEEEEcC
Q psy11784        202 ----------LHIFWCLILLSITYYLYRYTRRMK--EAKI--------IVANE---------------GEYGNVLLFLPA  246 (284)
Q Consensus       202 ----------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv--------~~~~~---------------~~~~~~lr~~p~  246 (284)
                                .|.|+.+++......+.+|++.+.  ..+.        +..|.               +...+.||++.-
T Consensus       278 ~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG  357 (376)
T PRK06460        278 YEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVG  357 (376)
T ss_pred             HHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEec
Confidence                      467888888533345566666553  1111        11111               112357888543


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q psy11784        247 MCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       247 l~~t~~~id~~~~~l~~~l~~~  268 (284)
                          -||.+.+++-|+++|+.+
T Consensus       358 ----lE~~~dl~~dl~~al~~~  375 (376)
T PRK06460        358 ----IEDVNDLIEDLDRALSTL  375 (376)
T ss_pred             ----cCCHHHHHHHHHHHHHhh
Confidence                367788888888887653

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=98.98  E-value=8.6e-08  Score=88.92  Aligned_cols=172  Identities=13%  Similarity=0.135  Sum_probs=106.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++|...+..|....    +++|.++|++||+++|+||++... ..+. .     .+...|++
T Consensus       136 ~e~l~~~i~---~~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~~-~~~~-p-----~~~gaDiv  201 (388)
T PRK07811        136 LDAVRAAIT---PRTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFASP-YLQQ-P-----LALGADVV  201 (388)
T ss_pred             HHHHHHhcC---cCCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCcc-ccCC-c-----hhhCCcEE
Confidence            566666664   46789999977777776665    999999999999999999998632 2222 1     12335776


Q ss_pred             E--ecccccC-C-cceeEEEec-HHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 T--VGKPMGN-G-MPIGAVITS-RKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~--~sK~l~~-G-~p~gav~~~-~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +  ++|.++| | ...|+++++ +++.+.+..                           +++..++.+.+.+.|++.   
T Consensus       202 v~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v  281 (388)
T PRK07811        202 VHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEV  281 (388)
T ss_pred             EecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            5  5699986 3 456887775 555443322                           224444566666666644   


Q ss_pred             -----------------------cCceeEEEEecccHHHHHHHHHHH--HCCc--------EEeec------------CC
Q psy11784        202 -----------------------LHIFWCLILLSITYYLYRYTRRMK--EAKI--------IVANE------------GE  236 (284)
Q Consensus       202 -----------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv--------~~~~~------------~~  236 (284)
                                             .|.|+.+++......+.+|...|.  ..|.        +..|.            +.
T Consensus       282 ~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~gi  361 (388)
T PRK07811        282 STVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAMTHASTAGSQLEV  361 (388)
T ss_pred             eEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcceeeccCCCCcceEeCCcccCcccCCHhhcCC
Confidence                                   466889998533345566666544  2221        11111            01


Q ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        237 YGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       237 ~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ..+.|||+.-+    |+.+.+++-|+++++
T Consensus       362 ~~~liR~svGl----E~~~dl~~dl~~al~  387 (388)
T PRK07811        362 PDDLVRLSVGI----EDVADLLADLEQALG  387 (388)
T ss_pred             CCCEEEEEeCC----CCHHHHHHHHHHHhh
Confidence            13578885444    566677777766653

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=98.97  E-value=3.7e-08  Score=91.47  Aligned_cols=172  Identities=15%  Similarity=0.139  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++.+|++|...+..|.+.+    +++|.++|++||+++|+|+++... .... ..     ....|++
T Consensus       136 ~~~l~~~i~---~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~-~~~~-pl-----~~g~Div  201 (390)
T PRK08133        136 LDAWRAAVR---PNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTP-ALQQ-PL-----KLGADVV  201 (390)
T ss_pred             HHHHHHhcC---cCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-ch-----hhCCcEE
Confidence            456666664   46889999988777888776    899999999999999999998521 1111 11     1225776


Q ss_pred             E--ecccccC-Ccce-eEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        157 T--VGKPMGN-GMPI-GAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       157 ~--~sK~l~~-G~p~-gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                      +  ++|.+++ |.++ |+++++++.++.+..                           +++..++...+.+.|++.    
T Consensus       202 v~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~  281 (390)
T PRK08133        202 IHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVE  281 (390)
T ss_pred             EeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            4  5799986 5666 566677776554332                           234445555666666644    


Q ss_pred             ----------------------cCceeEEEEecccHHHHHHHHHHH--HCCcEE--------eec---------------
Q psy11784        202 ----------------------LHIFWCLILLSITYYLYRYTRRMK--EAKIIV--------ANE---------------  234 (284)
Q Consensus       202 ----------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv~~--------~~~---------------  234 (284)
                                            .|.|+.+++....+.+.+|.+.|.  ..+.-+        .|.               
T Consensus       282 ~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~  361 (390)
T PRK08133        282 RVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAA  361 (390)
T ss_pred             EEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCCcceEeccCCCcceeeecCCCCCcccCCHHHHHhc
Confidence                                  466888888533344556666554  222111        111               


Q ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        235 GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       235 ~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +...+.||++.-+    |+.+.+++-|+++|+
T Consensus       362 gi~~~liR~svGl----E~~~dl~~dl~~al~  389 (390)
T PRK08133        362 GITEGLIRVAVGL----EDVADIKADLARGLA  389 (390)
T ss_pred             CCCCCeEEEEeCc----CCHHHHHHHHHHHhh
Confidence            0113567875333    567777777777764

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.97  E-value=1.2e-07  Score=94.91  Aligned_cols=184  Identities=16%  Similarity=0.109  Sum_probs=120.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +++|++.++++.+++++|++--....|+...+    +++|.++|+++|+++++|=++. +.+.     +. ..-.+-.|+
T Consensus       628 le~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~----V~eI~~iah~~Galv~vDgA~~~a~~~-----l~-~Pg~~GADi  697 (954)
T PRK12566        628 LDDLKAKAAAAGDRLSCLMITYPSTHGVYEEG----IREICEVVHQHGGQVYMDGANLNAQVG-----LA-RPADIGADV  697 (954)
T ss_pred             HHHHHHHhhccCCCEEEEEEEecCcCceecch----HHHHHHHHHHcCCEEEEEeeChhhccC-----CC-ChhhcCCCE
Confidence            78899988766677888877654444444333    9999999999999999998885 2211     11 011244788


Q ss_pred             EEec--cccc----CCcc-eeEEEecHHHHHhchh----------------------------------------hhhH-
Q psy11784        156 ITVG--KPMG----NGMP-IGAVITSRKIAESLNC----------------------------------------LDDN-  187 (284)
Q Consensus       156 v~~s--K~l~----~G~p-~gav~~~~~i~~~~~~----------------------------------------l~~~-  187 (284)
                      ++++  |.++    +|.| +|.+.+++++...+.+                                        +.++ 
T Consensus       698 ~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~eLk~aa  777 (954)
T PRK12566        698 SHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQLADAS  777 (954)
T ss_pred             EEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHHHHHHH
Confidence            8776  9885    3444 6665666644333221                                        1122 


Q ss_pred             ---HHHHHHHHHHHHhc-----cC---c-ee--EEEEe--c--ccHHHHHHHHHHHHCCcEEeec-CCCCCEEEEEcCCC
Q psy11784        188 ---RPSGKYLVRPLGIN-----LH---I-FW--CLILL--S--ITYYLYRYTRRMKEAKIIVANE-GEYGNVLLFLPAMC  248 (284)
Q Consensus       188 ---~~~~~~l~~~L~~~-----~G---~-~~--~i~~~--~--~~~~~~~~~~~l~~~Gv~~~~~-~~~~~~lr~~p~l~  248 (284)
                         ..+..|+.++|.+.     .+   . +.  .+.+.  +  .......+.++|++.|+..... -+..+.+|+.|.-.
T Consensus       778 ~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~  857 (954)
T PRK12566        778 EVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTES  857 (954)
T ss_pred             HHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeee
Confidence               33666888888654     11   1 11  12221  1  1134577999999999876532 12367899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhh
Q psy11784        249 LTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       249 ~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      .|++|||++++.+.++.+++.+
T Consensus       858 eskeEIDrf~eAL~~I~~e~~~  879 (954)
T PRK12566        858 ESKAELDRFVEAMLSIRAEIGK  879 (954)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988653

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=98.97  E-value=6.8e-08  Score=89.46  Aligned_cols=175  Identities=14%  Similarity=0.137  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc-CccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG-MGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG-~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++++.+.   +++.+|++|...+..|.+.+    +++|.++|+++|+++|+||++.. +..        .....-.|+
T Consensus       128 ~e~l~~~i~---~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~~~~--------~pl~~GaDi  192 (388)
T PRK08861        128 AAALDAALA---KKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTPVLQ--------KPLELGADF  192 (388)
T ss_pred             HHHHHHhcC---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCccccccC--------CCcccCCCE
Confidence            455666554   46789999977777888777    88999999999999999999962 211        112234677


Q ss_pred             EE--ecccccC-C-cceeEEEec-HHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        156 IT--VGKPMGN-G-MPIGAVITS-RKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       156 v~--~sK~l~~-G-~p~gav~~~-~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      ++  +.|.++| + .-.|+++++ +++.+.+..                           +++-.+.+..+.+.|+..  
T Consensus       193 vv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~  272 (388)
T PRK08861        193 VIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSL  272 (388)
T ss_pred             EEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            75  4599986 2 456777664 555554432                           334445555555555543  


Q ss_pred             ------------------------cCceeEEEEecccHHHHHHHHHHH--HCCcEE--------eec-------------
Q psy11784        202 ------------------------LHIFWCLILLSITYYLYRYTRRMK--EAKIIV--------ANE-------------  234 (284)
Q Consensus       202 ------------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv~~--------~~~-------------  234 (284)
                                              .|.++.+++....+.+.+|++.|.  ..+.-+        .|.             
T Consensus       273 v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~  352 (388)
T PRK08861        273 VGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGGVESLICHPASMTHRAMGEEALA  352 (388)
T ss_pred             eeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccCCCCCcceeeCCCcccccccCHHHHH
Confidence                                    567888998533344556666544  222111        110             


Q ss_pred             --CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        235 --GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       235 --~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                        +...+.||++.-+    |+++.+++-|+++++.+.+
T Consensus       353 ~~gi~~~liRlsvGl----E~~~dli~Dl~~al~~~~~  386 (388)
T PRK08861        353 EAGVSQQLLRLSVGL----EDAQDLIADLDQAFAKAAE  386 (388)
T ss_pred             hcCCCCCeEEEEeCc----CCHHHHHHHHHHHHHHHHh
Confidence              0123578885433    6788888888888887654

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=98.97  E-value=4.8e-08  Score=90.93  Aligned_cols=174  Identities=13%  Similarity=0.130  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++|...+..|.+.+    +++|.++|+++|+++|+||+|..+ -... ..     ....|++
T Consensus       140 ~e~l~~ai~---~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~~-~~~~-~~-----~~gaDiv  205 (398)
T PRK07504        140 LDNWEKAVR---PNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFATP-LFQK-PL-----ELGAHIV  205 (398)
T ss_pred             HHHHHHhcC---cCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCcccc-ccCC-ch-----hhCCCEE
Confidence            456666654   56889999998888888777    999999999999999999999722 1111 11     1235776


Q ss_pred             E--ecccccC-Cccee-EEEecHHHHHh-chh---------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 T--VGKPMGN-GMPIG-AVITSRKIAES-LNC---------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~--~sK~l~~-G~p~g-av~~~~~i~~~-~~~---------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +  ++|.+++ |.++| +++++++.+.. +..                           +++..++..++.+.|++.   
T Consensus       206 v~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v  285 (398)
T PRK07504        206 VYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKV  285 (398)
T ss_pred             EeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            5  5799986 67775 56666665432 221                           334556666666666653   


Q ss_pred             -----------------------cCceeEEEEecccHHHHHHHHHHHHCCc----------EEeec--------------
Q psy11784        202 -----------------------LHIFWCLILLSITYYLYRYTRRMKEAKI----------IVANE--------------  234 (284)
Q Consensus       202 -----------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv----------~~~~~--------------  234 (284)
                                             .|.|+.+++....+.+.+|++.|.=-.+          +..|.              
T Consensus       286 ~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~  365 (398)
T PRK07504        286 ARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGDAKSLITHPATTTHKNLSPEARAE  365 (398)
T ss_pred             cEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCeeeeCCCCCCcccCCHHHHHh
Confidence                                   3778899985333445566665542111          11111              


Q ss_pred             -CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        235 -GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       235 -~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                       +...+.+||+.-+    |+.+.+++-|+++|+.+
T Consensus       366 ~gi~~~liR~svGl----E~~~dl~~dl~~al~~~  396 (398)
T PRK07504        366 LGISEGFLRLSAGL----EDTDDLIEDLAAALKKV  396 (398)
T ss_pred             cCCCCCeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence             1123568885433    56777777787777654

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=98.97  E-value=8.7e-09  Score=83.12  Aligned_cols=79  Identities=23%  Similarity=0.333  Sum_probs=61.7

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCC
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNG  165 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G  165 (284)
                      ..+++++++++..+..|...+    +++|.++|+++|+++|+||++.++..... .  .......+|+++.|  |.+++ 
T Consensus        90 ~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~-~--~~~~~~~~d~~~~s~~K~~~~-  161 (170)
T cd01494          90 KPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAP-G--VLIPEGGADVVTFSLHKNLGG-  161 (170)
T ss_pred             cCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEeccccccccccc-c--cccccccCCEEEEEcccccCC-
Confidence            456999999999998887776    59999999999999999999997754332 1  12223458999887  99987 


Q ss_pred             cceeEEEec
Q psy11784        166 MPIGAVITS  174 (284)
Q Consensus       166 ~p~gav~~~  174 (284)
                      .+.|+++++
T Consensus       162 ~~~G~l~~~  170 (170)
T cd01494         162 EGGGVVIVK  170 (170)
T ss_pred             CceEEEEeC
Confidence            677877754

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK09028 cystathionine beta-lyase; Provisional

Probab=98.95  E-value=1.2e-07  Score=87.83  Aligned_cols=173  Identities=14%  Similarity=0.101  Sum_probs=109.7

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT  157 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~  157 (284)
                      +.+++.+.   +++.+|++|...+..|.+.+    +++|.++|++||+++|+||+|+.    +   ..+.....-.|+++
T Consensus       137 e~l~~~l~---~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~----p---~~~~Pl~~GaDivv  202 (394)
T PRK09028        137 EGIRELIR---PNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWAS----P---INSRPFEMGVDISI  202 (394)
T ss_pred             HHHHHhcC---cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCccc----c---ccCCccccCceEEE
Confidence            45666554   46889999998887776655    99999999999999999999962    2   12222334578875


Q ss_pred             --ecccccC-C-cceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        158 --VGKPMGN-G-MPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       158 --~sK~l~~-G-~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                        ..|.++| | .-.|+++.++++.+.+..                           +++..++...+.+.|++.     
T Consensus       203 ~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~  282 (394)
T PRK09028        203 QAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDH  282 (394)
T ss_pred             EeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccE
Confidence              5699987 3 556777767766554432                           335555666666666654     


Q ss_pred             ---------------------cCceeEEEEe-cccHHHHHHHHHHH--HCCc--------EEeec-----------CCCC
Q psy11784        202 ---------------------LHIFWCLILL-SITYYLYRYTRRMK--EAKI--------IVANE-----------GEYG  238 (284)
Q Consensus       202 ---------------------~G~~~~i~~~-~~~~~~~~~~~~l~--~~Gv--------~~~~~-----------~~~~  238 (284)
                                           .|.|+.+++. .+.+.+.+|++.|.  ..+.        +..|.           +..+
T Consensus       283 V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~~~~~~~~~~~~~  362 (394)
T PRK09028        283 VRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLILGVFGINKLRTATNWDFSK  362 (394)
T ss_pred             EECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEecccCCCcceeECCCCcCccCchhhhcCCC
Confidence                                 4678899985 23345566776654  2121        11111           0123


Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        239 NVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       239 ~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +.|||+.-+    |+.+.+++-|+++++.+
T Consensus       363 ~liR~svGl----Ed~~dLi~Dl~~Al~~~  388 (394)
T PRK09028        363 PLIRLHIGL----EDVDDLIADLEAGFERY  388 (394)
T ss_pred             CeEEEEeCc----CCHHHHHHHHHHHHHHH
Confidence            568885444    56677777777776654

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=98.93  E-value=1.1e-07  Score=88.14  Aligned_cols=175  Identities=15%  Similarity=0.160  Sum_probs=109.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +++.+|++|...+..|.+.+    +++|.++|+++|+++|+||+|.... ...      ......|++
T Consensus       127 ~e~l~~~l~---~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~~-~~~------pl~~gaDiv  192 (386)
T PRK08045        127 EQALRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSPA-LQN------PLALGADLV  192 (386)
T ss_pred             HHHHHHhcc---cCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccc-cCC------chhhCCCEE
Confidence            455666654   35788899987777887776    8999999999999999999986331 111      112234776


Q ss_pred             --EecccccC--CcceeEEEe-cHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 --TVGKPMGN--GMPIGAVIT-SRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 --~~sK~l~~--G~p~gav~~-~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                        +++|.++|  +...|++++ ++++.+.+..                           +++..++...+.+.|++.   
T Consensus       193 v~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v  272 (386)
T PRK08045        193 LHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLV  272 (386)
T ss_pred             EeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence              46799985  356787776 4666554432                           234445555555555543   


Q ss_pred             -----------------------cCceeEEEEecccHHHHHHHHHHHH--CCc--------EEeec--------------
Q psy11784        202 -----------------------LHIFWCLILLSITYYLYRYTRRMKE--AKI--------IVANE--------------  234 (284)
Q Consensus       202 -----------------------~G~~~~i~~~~~~~~~~~~~~~l~~--~Gv--------~~~~~--------------  234 (284)
                                             .|.|+.+++....+.+.+|++.|.=  .+.        +..|.              
T Consensus       273 ~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~  352 (386)
T PRK08045        273 KKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAA  352 (386)
T ss_pred             eEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCCCCceeEeCCCCcccccCCHHHHHh
Confidence                                   4678888885333445667666542  121        11111              


Q ss_pred             -CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        235 -GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       235 -~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                       +...+.||++.-+    |+.+.+++-|+++++...
T Consensus       353 ~gi~~~liR~svGl----E~~~dl~~dl~~al~~~~  384 (386)
T PRK08045        353 AGISETLLRISTGI----EDGEDLIADLENGFRAAN  384 (386)
T ss_pred             cCCCCCeEEEEeCc----CCHHHHHHHHHHHHHHhh
Confidence             0123578885443    567777777777776543

>PRK07050 cystathionine beta-lyase; Provisional

Probab=98.91  E-value=1.8e-07  Score=87.00  Aligned_cols=172  Identities=15%  Similarity=0.130  Sum_probs=105.5

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE-
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII-  156 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv-  156 (284)
                      +.+++.+.   +++.+|++|...+..|    +...+++|.++|+++|+++|+|++|+.    |. .+.-...|  .|++ 
T Consensus       141 ~~l~~~i~---~~tklV~le~p~Np~~----~~~di~~I~~ia~~~gi~livD~a~a~----~~-~~~~l~~G--aDi~v  206 (394)
T PRK07050        141 AGIADLIQ---PNTRLIWLEAPGSVTM----EVPDVPAITAAARARGVVTAIDNTYSA----GL-AFKPFEHG--VDISV  206 (394)
T ss_pred             HHHHHhcC---CCCeEEEEECCCCCCc----cHhhHHHHHHHHHHcCCEEEEECCccc----cc-ccCHHHcC--CeEEE
Confidence            44566554   4578899997655544    455599999999999999999999862    11 11111123  4766 


Q ss_pred             -EecccccCC--cceeEEEe-cHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        157 -TVGKPMGNG--MPIGAVIT-SRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       157 -~~sK~l~~G--~p~gav~~-~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                       .++|.++||  .+.|++++ ++++++.+..                           +++..+++.++.+.|++.    
T Consensus       207 ~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~  286 (394)
T PRK07050        207 QALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIA  286 (394)
T ss_pred             EECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence             578999864  57887777 5667665543                           234444455555655543    


Q ss_pred             ----------------------cCceeEEEEec--ccHHHHHHHHHHHHCCcEEeecC-------------------CCC
Q psy11784        202 ----------------------LHIFWCLILLS--ITYYLYRYTRRMKEAKIIVANEG-------------------EYG  238 (284)
Q Consensus       202 ----------------------~G~~~~i~~~~--~~~~~~~~~~~l~~~Gv~~~~~~-------------------~~~  238 (284)
                                            .|.++.+++..  ......++.+.|...++-+.-++                   ..+
T Consensus       287 ~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~  366 (394)
T PRK07050        287 TVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLAMPYDVASMRTAKWPHRG  366 (394)
T ss_pred             EEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeeccccCCccceEeeCcccccchhhcCCCC
Confidence                                  35566677743  23556778777776554332111                   112


Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        239 NVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       239 ~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +.|||+.-+    |+.+.+++-|+++++.
T Consensus       367 ~~iR~svGl----E~~~dl~~dl~~al~~  391 (394)
T PRK07050        367 TLVRLYIGL----EDEADLIADLEQALEA  391 (394)
T ss_pred             CEEEEEeCc----CCHHHHHHHHHHHHHH
Confidence            567875444    5666667777666654

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=98.90  E-value=1.4e-07  Score=87.41  Aligned_cols=92  Identities=21%  Similarity=0.222  Sum_probs=64.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +++.+|++|...+..|...+    +++|.++|+++|+++|+||+|..+ .... .     .....|++
T Consensus       126 ~~~l~~ai~---~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~-p-----l~~gaDiv  191 (382)
T TIGR02080       126 EQALRAALA---QKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSP-ALQN-P-----LALGADLV  191 (382)
T ss_pred             HHHHHHhcC---cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-c-----hhhCCCEE
Confidence            456666664   45788999977777887776    899999999999999999999632 1111 1     11234766


Q ss_pred             --EecccccC--CcceeEEEe-cHHHHHhch
Q psy11784        157 --TVGKPMGN--GMPIGAVIT-SRKIAESLN  182 (284)
Q Consensus       157 --~~sK~l~~--G~p~gav~~-~~~i~~~~~  182 (284)
                        +++|.++|  ++..|++++ ++++.+.+.
T Consensus       192 v~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~  222 (382)
T TIGR02080       192 LHSCTKYLNGHSDVIAGAVIAKDPQVAEELA  222 (382)
T ss_pred             EeecceeccCCCCceeEEEEeCCHHHHHHHH
Confidence              56799975  367788776 566655443

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK07503 methionine gamma-lyase; Provisional

Probab=98.90  E-value=1.7e-07  Score=87.37  Aligned_cols=92  Identities=17%  Similarity=0.272  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++|...+..|...+    +++|.++|++||+++|+|++|... ..+. .     .+...|++
T Consensus       140 ~~~l~~~i~---~~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~~-~~~~-~-----l~~g~Di~  205 (403)
T PRK07503        140 PAALKAAIS---DKTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCTP-YLQR-P-----LELGADLV  205 (403)
T ss_pred             HHHHHHhcC---ccCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-c-----hhhCCCEE
Confidence            456666664   45788999987777887776    999999999999999999999632 2222 1     12345776


Q ss_pred             E--ecccccC-C-cceeEEEecHHHHHhch
Q psy11784        157 T--VGKPMGN-G-MPIGAVITSRKIAESLN  182 (284)
Q Consensus       157 ~--~sK~l~~-G-~p~gav~~~~~i~~~~~  182 (284)
                      +  ++|.+++ | ...|+++.++++++.+.
T Consensus       206 v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~  235 (403)
T PRK07503        206 VHSATKYLGGHGDITAGLVVGGKALADRIR  235 (403)
T ss_pred             EccccccccCCCceeEEEEEcCHHHHHHHH
Confidence            4  6799987 4 66788888888876654

>PRK06234 methionine gamma-lyase; Provisional

Probab=98.89  E-value=1.1e-07  Score=88.64  Aligned_cols=174  Identities=14%  Similarity=0.111  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh--CCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI--GGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+++++.+.   +++.+|++|...+..|.+.+    +++|.++|+++  |+++|+||++... ..+. .     .+...|
T Consensus       139 ~e~l~~~i~---~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~~-~~~~-~-----l~~g~D  204 (400)
T PRK06234        139 LEEVRNALK---ANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCTP-YIQR-P-----LQLGAD  204 (400)
T ss_pred             HHHHHHHhc---cCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCch-hcCC-c-----hhhCCc
Confidence            466666664   45789999988888888776    99999999997  9999999998632 1222 1     122467


Q ss_pred             EE--EecccccC-Ccce-eEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        155 II--TVGKPMGN-GMPI-GAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       155 iv--~~sK~l~~-G~p~-gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      ++  +++|.+++ |.++ |++++++++++.+..                             +++..++.+++.+.|++.
T Consensus       205 ivv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~  284 (400)
T PRK06234        205 VVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESH  284 (400)
T ss_pred             EEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcC
Confidence            66  46799986 5554 888889888776542                             335555666666666653


Q ss_pred             --------------------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC--------------------
Q psy11784        202 --------------------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG--------------------  235 (284)
Q Consensus       202 --------------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------------------  235 (284)
                                                .|.++.+++....+.+.+|.+.|.--++-..-++                    
T Consensus       285 ~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~  364 (400)
T PRK06234        285 PAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEE  364 (400)
T ss_pred             CCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCCCCceecCCccCCCCCCCHHH
Confidence                                      4668888885333456677777664433222111                    


Q ss_pred             -----CCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        236 -----EYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       236 -----~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                           ...+.+||+.-+    |+.+.+++-|+++++.+
T Consensus       365 ~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~~~  398 (400)
T PRK06234        365 RKEAGISDGLVRLSVGL----EDVDDIIADLKQALDLI  398 (400)
T ss_pred             HHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence                 123578885444    56777777777777653

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=98.89  E-value=2e-07  Score=85.80  Aligned_cols=171  Identities=15%  Similarity=0.170  Sum_probs=107.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+.+++.++   +++.+|++|...+..|    +...+++|.++|++||+++|+||++. ++  .+.      ......|+
T Consensus       126 ~~~l~~~i~---~~tklv~le~P~NP~~----~~~dl~~I~~la~~~g~~lIvD~t~~~~~--~~~------p~~~g~di  190 (366)
T PRK08247        126 LKAIEQAIT---PNTKAIFIETPTNPLM----QETDIAAIAKIAKKHGLLLIVDNTFYTPV--LQR------PLEEGADI  190 (366)
T ss_pred             HHHHHHhcc---cCceEEEEECCCCCCC----cHHHHHHHHHHHHHcCCEEEEECCCcccc--ccC------chhcCCcE
Confidence            566777664   4578899986655433    44559999999999999999999984 22  111      11123466


Q ss_pred             E--EecccccC--CcceeEEEec-HHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        156 I--TVGKPMGN--GMPIGAVITS-RKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       156 v--~~sK~l~~--G~p~gav~~~-~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      +  +++|.++|  +...|+++++ +++.+.+..                           +++.+++.+.+.+.|++.  
T Consensus       191 ~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~  270 (366)
T PRK08247        191 VIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPG  270 (366)
T ss_pred             EEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5  57899986  3567888876 566555432                           235566777777777764  


Q ss_pred             --------cCceeEEEEecccHHHHHHHHHHH----------HCCcEEeecC---------------CCCCEEEEEcCCC
Q psy11784        202 --------LHIFWCLILLSITYYLYRYTRRMK----------EAKIIVANEG---------------EYGNVLLFLPAMC  248 (284)
Q Consensus       202 --------~G~~~~i~~~~~~~~~~~~~~~l~----------~~Gv~~~~~~---------------~~~~~lr~~p~l~  248 (284)
                              .|.|+.+++. ..+...+|.+.+.          .+.+++.|..               ...+.+||+.-+ 
T Consensus       271 v~~v~~P~~gg~~sf~~~-~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl-  348 (366)
T PRK08247        271 VTDVLYPGRGGMLSFRLQ-DEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI-  348 (366)
T ss_pred             eeEEecCCcCcEEEEEEC-CHHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc-
Confidence                    4677788774 2233344444322          1234444431               123578885433 


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy11784        249 LTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       249 ~t~~~id~~~~~l~~~l~~  267 (284)
                         |+++.+++-|+++++.
T Consensus       349 ---E~~~dl~~dl~~al~~  364 (366)
T PRK08247        349 ---ENVEDLIADLKQAFKQ  364 (366)
T ss_pred             ---CCHHHHHHHHHHHHhh
Confidence               6677778888777764

>PRK08114 cystathionine beta-lyase; Provisional

Probab=98.88  E-value=1.8e-07  Score=86.70  Aligned_cols=174  Identities=16%  Similarity=0.157  Sum_probs=114.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhC--CEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIG--GVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+.+++.++   +++..|++|.+.+..|.+.+    +++|.++|+++|  +++|+|.+++    +|.  + ++....-.|
T Consensus       137 ~~~l~~~l~---~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a----~p~--~-~~pl~~GaD  202 (395)
T PRK08114        137 GADIAKLIQ---PNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA----AGV--L-FKALDFGID  202 (395)
T ss_pred             HHHHHHhcC---CCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc----ccc--c-cCHHHcCCc
Confidence            456777665   45889999999999999998    999999999985  9999999886    222  2 444445688


Q ss_pred             EEEe--cccccCC--cceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        155 IITV--GKPMGNG--MPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       155 iv~~--sK~l~~G--~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      +++.  .|.++|.  .-.|+++.+++..+.+..                           +++-.+++..+.+.|++.  
T Consensus       203 ivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~  282 (395)
T PRK08114        203 ISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPE  282 (395)
T ss_pred             EEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            8865  4999873  567777777766554432                           335555666666666643  


Q ss_pred             ------------------------cCceeEEEEec--ccHHHHHHHHHHHH--CCc--------EEe--e----------
Q psy11784        202 ------------------------LHIFWCLILLS--ITYYLYRYTRRMKE--AKI--------IVA--N----------  233 (284)
Q Consensus       202 ------------------------~G~~~~i~~~~--~~~~~~~~~~~l~~--~Gv--------~~~--~----------  233 (284)
                                              .|.|+.+++..  ..+.+.+|++.|.=  .++        +..  |          
T Consensus       283 V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlGg~~SLi~~~~~~~~~~~~~~~  362 (395)
T PRK08114        283 VARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLILANQPEEIAAIRPAG  362 (395)
T ss_pred             EeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeecccCCccceeccCCchhhhccCChh
Confidence                                    46788898853  23445566665431  111        110  0          


Q ss_pred             -cCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        234 -EGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       234 -~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                       .+..++.||++.-    -|+++.+++-|+++++.+
T Consensus       363 ~~~~~~~liRlSvG----lEd~~DLi~Dl~~Al~~~  394 (395)
T PRK08114        363 EVDFTGTLIRLHIG----LEDVDDLIADLAAGFARI  394 (395)
T ss_pred             HhcCCCCeEEEEec----cCCHHHHHHHHHHHHHhh
Confidence             0012367888543    367788888888877643

>PRK05968 hypothetical protein; Provisional

Probab=98.88  E-value=2e-07  Score=86.48  Aligned_cols=171  Identities=13%  Similarity=0.098  Sum_probs=106.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.    ++.+|++|...+..+    +...+++|.++|++||+++|+|+++... -... ..   ..|  .|++
T Consensus       138 ~~~l~~~i~----~tklV~ie~pt~~~~----~~~dl~~i~~la~~~gi~vivD~a~a~~-~~~~-p~---~~g--~Div  202 (389)
T PRK05968        138 EEAVAKALP----GAKLLYLESPTSWVF----ELQDVAALAALAKRHGVVTMIDNSWASP-VFQR-PI---TLG--VDLV  202 (389)
T ss_pred             HHHHHHhcc----cCCEEEEECCCCCCC----cHHHHHHHHHHHHHcCCEEEEECCCcch-hccC-ch---hcC--CcEE
Confidence            455666552    456788886555433    4455999999999999999999998632 1111 11   123  4666


Q ss_pred             --EecccccC-C-cceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 --TVGKPMGN-G-MPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 --~~sK~l~~-G-~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                        +++|.++| | ...|++++++++++.+..                            +++-.++.+++.+.|++.   
T Consensus       203 v~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v  282 (389)
T PRK05968        203 IHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVV  282 (389)
T ss_pred             EeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence              46799986 3 456777888887765442                            334455567777777764   


Q ss_pred             -----c-------------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-------------------------CC
Q psy11784        202 -----L-------------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-------------------------YG  238 (284)
Q Consensus       202 -----~-------------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------------------~~  238 (284)
                           -             |.++.+++. ......+|++.|...++.+.-++.                         ..
T Consensus       283 ~~v~~p~l~~~~~~~~~g~g~~~sf~~~-~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~  361 (389)
T PRK05968        283 ERVCHPALANHPPAGLSGTSGLFSFIFR-EGIDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSP  361 (389)
T ss_pred             cEEECCCCCCChHHhCCCCceEEEEEEC-CHHHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCC
Confidence                 1             346677774 234567888888765543322110                         13


Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        239 NVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       239 ~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +.+|++.-+-    +.+.+++-|+++++.
T Consensus       362 ~liR~SvGlE----~~~dl~~dl~~al~~  386 (389)
T PRK05968        362 RSVRLHVGLE----GTEALWADLEQALAA  386 (389)
T ss_pred             CeEEEEeccC----CHHHHHHHHHHHHHH
Confidence            5788876664    455555666666554

>PLN02880 tyrosine decarboxylase

Probab=98.88  E-value=5.1e-07  Score=86.14  Aligned_cols=189  Identities=13%  Similarity=0.019  Sum_probs=115.5

Q ss_pred             HHHHHHHHHhc---CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEAH---RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .+.|++.|++.   +..+.+|+..---...|.+-|    +++|.++|++||+++.+|=++.|+-..-. .+-....|+ .
T Consensus       223 ~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~-~~~~~l~gie~  297 (490)
T PLN02880        223 PELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICP-EYRHYIDGVEE  297 (490)
T ss_pred             HHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCH-HHHHHhcCchh
Confidence            67788887632   222555665554455677777    99999999999999999988876422111 111122454 5


Q ss_pred             CcEEEe--cccccCCcceeEEEecHHH--HHhc-------h------------------------h--------------
Q psy11784        153 PDIITV--GKPMGNGMPIGAVITSRKI--AESL-------N------------------------C--------------  183 (284)
Q Consensus       153 pDiv~~--sK~l~~G~p~gav~~~~~i--~~~~-------~------------------------~--------------  183 (284)
                      .|.+++  -|.+...++.|+++.++.-  .+.+       .                        .              
T Consensus       298 aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g  377 (490)
T PLN02880        298 ADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVEN  377 (490)
T ss_pred             cCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHH
Confidence            788776  4999877888999886421  1100       0                        0              


Q ss_pred             ----hhhHHHHHHHHHHHHHhccC---------ceeEEEEecc-------cHHHHHHHHHHHHCCcEE-eecC-CCCCEE
Q psy11784        184 ----LDDNRPSGKYLVRPLGINLH---------IFWCLILLSI-------TYYLYRYTRRMKEAKIIV-ANEG-EYGNVL  241 (284)
Q Consensus       184 ----l~~~~~~~~~l~~~L~~~~G---------~~~~i~~~~~-------~~~~~~~~~~l~~~Gv~~-~~~~-~~~~~l  241 (284)
                          +++.-++.+++.+.|++..+         .++.+.+.+.       .....++.++|.+.|-+. .... .+...+
T Consensus       378 ~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~l  457 (490)
T PLN02880        378 LQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVL  457 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEE
Confidence                12333677777777765411         1233333321       112345666777665444 3321 233588


Q ss_pred             EEEcCCCC-CHHHHHHHHHHHHHHHHHHhh
Q psy11784        242 LFLPAMCL-TTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       242 r~~p~l~~-t~~~id~~~~~l~~~l~~~~~  270 (284)
                      |+++.... |++|++.+++.+.+..+++..
T Consensus       458 R~~~~n~~tt~~di~~~~~~i~~~~~~~~~  487 (490)
T PLN02880        458 RFAVGAPLTEERHVTAAWKVLQDEASKLLG  487 (490)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99874444 569999999999998887643

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=98.88  E-value=1.3e-07  Score=82.21  Aligned_cols=176  Identities=14%  Similarity=0.070  Sum_probs=115.2

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE-Ee--cccccCC
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII-TV--GKPMGNG  165 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv-~~--sK~l~~G  165 (284)
                      +.+++|++.---...|. +.+.+-+.+|-+|+++||++||+|.+|. .-.-|- .|.-...--.++|+ |+  ||.==-|
T Consensus       178 e~~g~ic~SRPtNPTGN-VlTdeE~~kldalA~~~giPliIDnAYg-~PFP~i-ifsd~~~~w~~NiilC~SLSK~GLPG  254 (417)
T COG3977         178 ESTGAICVSRPTNPTGN-VLTDEELAKLDALARQHGIPLIIDNAYG-VPFPGI-IFSDATPLWNENIILCMSLSKLGLPG  254 (417)
T ss_pred             cccceEEecCCCCCCCC-cccHHHHHHHHHHhhhcCCcEEEecccC-CCCCce-ecccccccCCCCEEEEeehhhcCCCC
Confidence            45888888743333454 5689999999999999999999999985 212221 11110111124443 44  5543347


Q ss_pred             cceeEEEecHHHHHhchh--------------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        166 MPIGAVITSRKIAESLNC--------------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       166 ~p~gav~~~~~i~~~~~~--------------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      .++|.++++++++..+..                                      .++++..-..+++.|-+.      
T Consensus       255 ~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHk  334 (417)
T COG3977         255 SRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHK  334 (417)
T ss_pred             cceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeec
Confidence            789999999999988765                                      113333333344433332      


Q ss_pred             -cCc-eeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 -LHI-FWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----------YGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 -~G~-~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                       .|. +.++-+..-.-...+++++|+++||++.|+..           ....+|+  +++-+++.|+..+.+|.+.+++.
T Consensus       335 pEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rm--n~~~~~~~ie~Gva~lae~ve~~  412 (417)
T COG3977         335 PEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRM--NYVPEPEKIEKGVAILAEEVERA  412 (417)
T ss_pred             CCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEE--ecCCCHHHHHHHHHHHHHHHHHH
Confidence             233 33443432234578999999999999998743           1247888  68889999999999999888765


Q ss_pred             h
Q psy11784        269 Q  269 (284)
Q Consensus       269 ~  269 (284)
                      -
T Consensus       413 y  413 (417)
T COG3977         413 Y  413 (417)
T ss_pred             H
Confidence            3

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=98.87  E-value=6.9e-08  Score=90.46  Aligned_cols=192  Identities=12%  Similarity=0.063  Sum_probs=115.9

Q ss_pred             HHHHHHHHHhc-CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccC----------ccccCcccc
Q psy11784         77 AQAARNIMEAH-RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGM----------GRSGSHFWA  145 (284)
Q Consensus        77 ~~~l~~~i~~~-~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~----------gr~G~~~~a  145 (284)
                      .+.|++.+... ...+++|+++--....|..+.+.+.+++|+++|++||++||.|+++.-.          |..+.....
T Consensus       138 ~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~e  217 (431)
T cd00617         138 VAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAE  217 (431)
T ss_pred             HHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHH
Confidence            68888888743 2348888888444434446779999999999999999999999997511          111110000


Q ss_pred             cc-ccCCCCcEEEec--ccccCCcce-eEEEecH-HHHHhchh-------------------------h---------hh
Q psy11784        146 FQ-TQGAVPDIITVG--KPMGNGMPI-GAVITSR-KIAESLNC-------------------------L---------DD  186 (284)
Q Consensus       146 ~~-~~g~~pDiv~~s--K~l~~G~p~-gav~~~~-~i~~~~~~-------------------------l---------~~  186 (284)
                      .. ..+---|..++|  |..+  .|+ |++++++ ++++.+..                         +         +.
T Consensus       218 i~~e~~s~sd~~~mS~~K~~~--~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~  295 (431)
T cd00617         218 IAREMFSYADGCTMSAKKDGL--VNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRH  295 (431)
T ss_pred             HHHHhhccCCEEEEEeecCCC--CccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHH
Confidence            00 001124444444  3322  233 4777775 57766542                         1         11


Q ss_pred             HHHHHHHHHHHHHhc--------cCceeEEEEe---c----ccHHHHHHHHHHH-HCCcEEeecCC--------------
Q psy11784        187 NRPSGKYLVRPLGIN--------LHIFWCLILL---S----ITYYLYRYTRRMK-EAKIIVANEGE--------------  236 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~--------~G~~~~i~~~---~----~~~~~~~~~~~l~-~~Gv~~~~~~~--------------  236 (284)
                      ..++.++|.+.|++.        .|.++.++..   +    ..-.+..++.+|+ +.||.+...+.              
T Consensus       296 ~~~~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~  375 (431)
T cd00617         296 RVEQVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKY  375 (431)
T ss_pred             HHHHHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccC
Confidence            122335566666654        3445555543   1    1113677886666 56888653211              


Q ss_pred             -CCCEEEEEcCC-CCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        237 -YGNVLLFLPAM-CLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       237 -~~~~lr~~p~l-~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                       .-+.+|+..|- ..|.+++|.+.+.+..+.++-..
T Consensus       376 ~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~  411 (431)
T cd00617         376 PELELVRLAIPRRVYTQDHMDYVAAAVIALYERRED  411 (431)
T ss_pred             CccceeEEeccccccCHHHHHHHHHHHHHHHhhHhh
Confidence             12578998886 67999999999999999887554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=98.86  E-value=2.7e-07  Score=86.11  Aligned_cols=91  Identities=12%  Similarity=0.154  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +++.+|++|...+..|.+..    +++|.++|++||+++|+||+|..-...-  .+     ....|++
T Consensus       135 ~~~l~~~i~---~~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~~~--pl-----~~gaDiv  200 (405)
T PRK08776        135 PRSLADALA---QSPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPALQK--PL-----EFGADLV  200 (405)
T ss_pred             HHHHHHhcC---cCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccccCC--cc-----cccCCEE
Confidence            456666664   35778888877777787655    9999999999999999999996321111  11     1235777


Q ss_pred             Ee--cccccC--CcceeEEEe-cHHHHHhc
Q psy11784        157 TV--GKPMGN--GMPIGAVIT-SRKIAESL  181 (284)
Q Consensus       157 ~~--sK~l~~--G~p~gav~~-~~~i~~~~  181 (284)
                      ++  +|.++|  +...|++++ ++++.+.+
T Consensus       201 v~S~tK~l~g~~~~~~G~vv~~~~~l~~~l  230 (405)
T PRK08776        201 LHSTTKYINGHSDVVGGAVVARDAELHQQL  230 (405)
T ss_pred             EecCceeecCCCCceEEEEEeCCHHHHHHH
Confidence            54  599975  355677766 46665544

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=98.86  E-value=2.1e-07  Score=86.04  Aligned_cols=172  Identities=12%  Similarity=0.107  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +++.+|++|...+..|.+.+    +++|.++|++||+++|+|+++.. +....      ......|++
T Consensus       121 ~~~le~~i~---~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~~-~~~~~------~l~~g~Di~  186 (378)
T TIGR01329       121 LDKVKAALG---PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMMS-PLLCN------PLELGADIV  186 (378)
T ss_pred             HHHHHHhcC---cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc-cccCC------hhhcCCcEE
Confidence            456666664   56889999988888888777    99999999999999999999842 11111      112235877


Q ss_pred             E--ecccccCC--cceeEEEec-HHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 T--VGKPMGNG--MPIGAVITS-RKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~--~sK~l~~G--~p~gav~~~-~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +  .+|.++|.  .-.|+++++ +++.+.+..                           +++-.++...+.+.|++.   
T Consensus       187 v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v  266 (378)
T TIGR01329       187 YHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRV  266 (378)
T ss_pred             EEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            5  46999863  456777774 444343322                           223334444555555443   


Q ss_pred             -----------------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC----------------------
Q psy11784        202 -----------------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----------------------  236 (284)
Q Consensus       202 -----------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------------------  236 (284)
                                             .|.++.+++ .....+.+|+..|...++.++.++.                      
T Consensus       267 ~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~-~~~~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~  345 (378)
T TIGR01329       267 KKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET-GSVALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREE  345 (378)
T ss_pred             cEEECCCCCCCccHHHHHHhCCCcceEEEEEE-CCHHHHHHHHHhCcCcccccCCCCCCceeeCCCccccccCCHHHHHh
Confidence                                   456778888 3444477888888655554443221                      


Q ss_pred             ---CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        237 ---YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       237 ---~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                         ..+.+||+.-    -|+.+.+++-|+++|+.
T Consensus       346 ~gi~~~liR~svG----lE~~~dl~~dl~~al~~  375 (378)
T TIGR01329       346 RGLPEDLVRLSVG----IEDVDDLISDLDIAFVT  375 (378)
T ss_pred             cCCCCCeEEEEec----cCCHHHHHHHHHHHHHh
Confidence               1246777433    35677777777777764

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=98.85  E-value=2.2e-07  Score=86.64  Aligned_cols=89  Identities=15%  Similarity=0.197  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++|...+..|.+..    +++|.++|+++|+++|+||++.. +-... ..   ..|  .|++
T Consensus       145 ~~~l~~ai~---~~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a~-~~~~~-~~---~~g--aDiv  210 (403)
T PRK07810        145 LSQWEEALS---VPTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFAT-PLLQR-GL---PLG--ADVV  210 (403)
T ss_pred             HHHHHHhcC---cCceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCCc-cccCC-hh---hcC--CcEE
Confidence            566777665   45789999988888888776    99999999999999999999862 11111 11   123  5877


Q ss_pred             E--ecccccC-Ccce-eEEEecHHHHH
Q psy11784        157 T--VGKPMGN-GMPI-GAVITSRKIAE  179 (284)
Q Consensus       157 ~--~sK~l~~-G~p~-gav~~~~~i~~  179 (284)
                      +  ++|.++| |..+ |+++++++...
T Consensus       211 v~S~tK~l~g~g~~~gG~v~~~~~~~~  237 (403)
T PRK07810        211 VYSGTKHIDGQGRVLGGAILGDREYID  237 (403)
T ss_pred             EccCCceecCCcCceeEEEEeChHHHH
Confidence            5  5699986 5555 77777776543

>PRK08064 cystathionine beta-lyase; Provisional

Probab=98.85  E-value=4.4e-07  Score=84.28  Aligned_cols=93  Identities=12%  Similarity=0.081  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++.+++.+.   +++.+|++|...+..|.+.+    +++|.++|+++|+++|+||+|..+ -...   .   .....|++
T Consensus       128 ~~~l~~~l~---~~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~---~---~~~g~Div  193 (390)
T PRK08064        128 LEEVAQNIK---PNTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTP-LLQK---P---LDLGADVV  193 (390)
T ss_pred             HHHHHHhcC---CCceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcc-cccC---c---hhhCCcEE
Confidence            456666554   45789999987777788776    999999999999999999998632 1111   1   11235776


Q ss_pred             E--ecccccC--CcceeEEEe-cHHHHHhchh
Q psy11784        157 T--VGKPMGN--GMPIGAVIT-SRKIAESLNC  183 (284)
Q Consensus       157 ~--~sK~l~~--G~p~gav~~-~~~i~~~~~~  183 (284)
                      +  ++|.++|  |.-.|++++ ++++.+.+..
T Consensus       194 v~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~  225 (390)
T PRK08064        194 LHSATKFLAGHSDVLAGLAVVKDEELAQKLYF  225 (390)
T ss_pred             EeecceeccCCccceeEEEEeCCHHHHHHHHH
Confidence            5  5699875  223455555 4567665543

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=98.84  E-value=4.1e-07  Score=85.30  Aligned_cols=183  Identities=13%  Similarity=0.048  Sum_probs=108.4

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccc-cCccccccccCC-CC
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRS-GSHFWAFQTQGA-VP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~-G~~~~a~~~~g~-~p  153 (284)
                      .++|++.|.... ..+.+|+..|-.+..|.    .+-+++|.++|++||+++|+|++|...... .. . ....... ..
T Consensus       191 ~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~----~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~-~-~~~g~~~Gra  264 (444)
T TIGR03531       191 VEDIERAIEEIGPDNILCVLSTTSCFAPRS----PDDIEEIAKICANYDIPHIVNNAYGLQSNKYME-L-INKAIKVGRV  264 (444)
T ss_pred             HHHHHHHHHhccCCCEEEEEEcCCcCCCcc----hhCHHHHHHHHHHcCCEEEEECcCcCcChhhhh-h-hhccccccCC
Confidence            688888887443 44777776665333233    345999999999999999999999632111 10 0 0001112 24


Q ss_pred             cEEEe--cccccCCcceeEEEe-cHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        154 DIITV--GKPMGNGMPIGAVIT-SRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       154 Div~~--sK~l~~G~p~gav~~-~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      |++++  .|.+.....-|++++ ++++.+.+..                             +++..++.+++.+.|+++
T Consensus       265 d~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l  344 (444)
T TIGR03531       265 DAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKL  344 (444)
T ss_pred             CeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77765  488864212355556 5666665543                             335666777788888776


Q ss_pred             ---cCc----------eeEEEEec-ccHHHHHHHHHHHHCCcE----EeecC-----------CCCC-------EEEEEc
Q psy11784        202 ---LHI----------FWCLILLS-ITYYLYRYTRRMKEAKII----VANEG-----------EYGN-------VLLFLP  245 (284)
Q Consensus       202 ---~G~----------~~~i~~~~-~~~~~~~~~~~l~~~Gv~----~~~~~-----------~~~~-------~lr~~p  245 (284)
                         .|.          -+++.+.. .......+...|+.++|-    +.++.           .+.+       ++-+.-
T Consensus       345 ~~~~~~~~~~~~~n~is~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  424 (444)
T TIGR03531       345 AERHGERLLDTPENPISSAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAA  424 (444)
T ss_pred             HHhhCcEeecCCCCceeEEEecccccccCHHHHHHHHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHH
Confidence               121          12333320 123466777788887662    11211           0111       444555


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q psy11784        246 AMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       246 ~l~~t~~~id~~~~~l~~~l  265 (284)
                      ++.++++|||.++++|++++
T Consensus       425 ~~g~~~~~~~~~~~~l~~~~  444 (444)
T TIGR03531       425 AIGMTKEDVDTFVSRLEKSL  444 (444)
T ss_pred             HhCCcHHHHHHHHHHHhhcC
Confidence            66789999999999998763

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK07049 methionine gamma-lyase; Validated

Probab=98.84  E-value=1.5e-07  Score=88.26  Aligned_cols=174  Identities=10%  Similarity=0.137  Sum_probs=107.0

Q ss_pred             HHHHHHHHhc--CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHH------hCCEEEEecccccCccccCcccccccc
Q psy11784         78 QAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE------IGGVVIADEIQCGMGRSGSHFWAFQTQ  149 (284)
Q Consensus        78 ~~l~~~i~~~--~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tG~gr~G~~~~a~~~~  149 (284)
                      +.+++.++..  .+++.+|++|...+..|.+..    ++++.++|++      +++++|+||++.++....  ..   .+
T Consensus       160 ~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d----~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~--pl---~~  230 (427)
T PRK07049        160 AAIGAAAEAAAAKGRVSLILIETPANPTNSLVD----VAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK--PL---EH  230 (427)
T ss_pred             HHHHHHHHhhccCCCceEEEEECCCCCCCcccC----HHHHHHHHHHhhhcccCCCEEEEECCccccccCC--cc---cc
Confidence            4555555421  245889999988887887665    5555555554      899999999976431111  11   12


Q ss_pred             CCCCcEE--EecccccC--CcceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHH
Q psy11784        150 GAVPDII--TVGKPMGN--GMPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       150 g~~pDiv--~~sK~l~~--G~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L  198 (284)
                        ..|++  +++|.++|  |+.+|++++++++++.+..                           +++..++.+.+.+.|
T Consensus       231 --g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L  308 (427)
T PRK07049        231 --GADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFL  308 (427)
T ss_pred             --CCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence              24665  68899995  6999999999988776654                           334555666666666


Q ss_pred             Hhc----------------------------cCceeEEEEecccHHHHHHHHHHH--HCCcEE--------eec------
Q psy11784        199 GIN----------------------------LHIFWCLILLSITYYLYRYTRRMK--EAKIIV--------ANE------  234 (284)
Q Consensus       199 ~~~----------------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv~~--------~~~------  234 (284)
                      ++.                            .|.++.+++....+.+.+|++.|.  ..++-+        .|.      
T Consensus       309 ~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~  388 (427)
T PRK07049        309 RDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSG  388 (427)
T ss_pred             HhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCcccEEcccCCCCCceeeCCCcccccc
Confidence            654                            244777887533344556666554  222111        111      


Q ss_pred             ---------CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        235 ---------GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       235 ---------~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                               +...+.|||+.-+    |+++.+++-|+++|+
T Consensus       389 ~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  425 (427)
T PRK07049        389 VPADVRERIGVLESTIRLSIGI----EHPDDLIADLAQALD  425 (427)
T ss_pred             CCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence                     0123567875433    667777777777765

>PRK05967 cystathionine beta-lyase; Provisional

Probab=98.83  E-value=4.2e-07  Score=84.28  Aligned_cols=173  Identities=16%  Similarity=0.095  Sum_probs=106.3

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE-
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII-  156 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv-  156 (284)
                      +.+++.++   +++.+|++|...+..+.+.    .+++|.++|+++|+++|+|+++...       ..+.....-.|++ 
T Consensus       140 e~l~~al~---~~TklV~lesPsNP~l~v~----dl~~I~~la~~~g~~vvVD~t~a~p-------~~~~pl~~GaDivv  205 (395)
T PRK05967        140 AGIAKLMR---PNTKVVHTEAPGSNTFEMQ----DIPAIAEAAHRHGAIVMMDNTWATP-------LYFRPLDFGVDISI  205 (395)
T ss_pred             HHHHHhcC---cCceEEEEECCCCCCCcHH----HHHHHHHHHHHhCCEEEEECCccCc-------eecChhHcCCCEEE
Confidence            45666664   4588999997666545444    4999999999999999999999732       1122223346766 


Q ss_pred             -EecccccC-C-cceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        157 -TVGKPMGN-G-MPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       157 -~~sK~l~~-G-~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                       ...|.++| | .-.|+++.+++..+.+..                           +++-.+++..+.+.|++.     
T Consensus       206 ~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~  285 (395)
T PRK05967        206 HAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVAR  285 (395)
T ss_pred             EecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence             46799987 3 566777777776554432                           234444455555555543     


Q ss_pred             ---------------------cCceeEEEEecc----cHHHHHHHHHHHH--CCcEEe--------e---------cCCC
Q psy11784        202 ---------------------LHIFWCLILLSI----TYYLYRYTRRMKE--AKIIVA--------N---------EGEY  237 (284)
Q Consensus       202 ---------------------~G~~~~i~~~~~----~~~~~~~~~~l~~--~Gv~~~--------~---------~~~~  237 (284)
                                           .|.|+.+++...    .+.+.+|.+.|.=  .++-+.        +         .+..
T Consensus       286 V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sLi~~~~~~~~~~~~~~~~  365 (395)
T PRK05967        286 VLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESLALHVKLGDRTVAKAPYA  365 (395)
T ss_pred             EECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEccCCCCcceeeeeCCCChhHhhhccCC
Confidence                                 466888888522    3456666666541  221110        0         0112


Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        238 GNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       238 ~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      ++.+||+.-+    |+.+.+++-|+++++.+
T Consensus       366 ~~liRlSvGl----Ed~~dLi~Dl~~Al~~~  392 (395)
T PRK05967        366 GPVIRLQIGL----EDVPDLKADLERGFAAA  392 (395)
T ss_pred             CCeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            3568885444    56777777777777654

>PRK07582 cystathionine gamma-lyase; Validated

Probab=98.82  E-value=2e-07  Score=85.80  Aligned_cols=158  Identities=13%  Similarity=0.123  Sum_probs=101.5

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcEE--EecccccC-
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDII--TVGKPMGN-  164 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDiv--~~sK~l~~-  164 (284)
                      +++..|++|...+..|.+.+    +++|.++|+++|+++|+||+|. .+   |...     .....|++  +++|.++| 
T Consensus       131 ~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~~---~~~p-----~~~g~Divv~S~sK~l~G~  198 (366)
T PRK07582        131 AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATPL---GQRP-----LELGADLVVASDTKALTGH  198 (366)
T ss_pred             cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCcc---ccCc-----hhcCCcEEEecccccccCC
Confidence            35778888877766776665    9999999999999999999984 22   2111     12335776  46799976 


Q ss_pred             -CcceeEEEec-HHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc--------------
Q psy11784        165 -GMPIGAVITS-RKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN--------------  201 (284)
Q Consensus       165 -G~p~gav~~~-~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~--------------  201 (284)
                       |+.+|+++++ +++.+.+..                           +++..+++..+.+.|++.              
T Consensus       199 ~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~  278 (366)
T PRK07582        199 SDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGD  278 (366)
T ss_pred             CCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCC
Confidence             5788988874 666665443                           346667777777777765              


Q ss_pred             ------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeec---------------C--CCCCEEEEEcCCCCCHH
Q psy11784        202 ------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANE---------------G--EYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       202 ------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~---------------~--~~~~~lr~~p~l~~t~~  252 (284)
                                  .|.++.+++. +.+.+.++   +.+.+++....               +  ...+.||++..+-..++
T Consensus       279 p~~~~~~~~~~~~gg~~s~~~~-~~~~~~~~---~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~d  354 (366)
T PRK07582        279 PAHEVAARQMRRFGGLVSFELA-DAAAAERF---VAASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDD  354 (366)
T ss_pred             ccHHHHHhhCCCCcceEEEEeC-CHHHHHHH---HHhCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHH
Confidence                        3567788874 33333333   33344544210               0  12357999887766555


Q ss_pred             HHHHHHHHHH
Q psy11784        253 NVLFIVSTLN  262 (284)
Q Consensus       253 ~id~~~~~l~  262 (284)
                      .|+.+.++|+
T Consensus       355 li~dl~~al~  364 (366)
T PRK07582        355 LVADLERALD  364 (366)
T ss_pred             HHHHHHHHHh
Confidence            5555555443

>KOG0634|consensus

Probab=98.82  E-value=6.9e-07  Score=81.24  Aligned_cols=189  Identities=10%  Similarity=0.046  Sum_probs=121.2

Q ss_pred             HHHHHHHHHhcCC------CeeEEEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcccc----C----
Q psy11784         77 AQAARNIMEAHRD------NIATLICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG----S----  141 (284)
Q Consensus        77 ~~~l~~~i~~~~~------~vaavi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G----~----  141 (284)
                      .+.|++.+.....      .....-.=|. |+-.|. ..+.+--++|.+|+++|++++|-||+|-=+ ..+    .    
T Consensus       184 pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~-tls~errk~iy~LArKyDfLIVeDdpYy~L-q~~~y~~~~~~~  261 (472)
T KOG0634|consen  184 PESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGN-TLSLERRKKIYQLARKYDFLIVEDDPYYFL-QMNTYNPSLELE  261 (472)
T ss_pred             HHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCC-ccCHHHHHHHHHHHHHcCEEEEecCcccee-eccccCCCcccc
Confidence            4677887763221      1333444454 666675 558899999999999999999999998522 111    1    


Q ss_pred             -cccccccc--CCCCc------------EEEecccccCCcceeEEEecHHHHHhchh-----------------------
Q psy11784        142 -HFWAFQTQ--GAVPD------------IITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------  183 (284)
Q Consensus       142 -~~~a~~~~--g~~pD------------iv~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------  183 (284)
                       .-+..+.+  .+.|+            .-+|||-++-|+++|++.+++-..+....                       
T Consensus       262 ~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~  341 (472)
T KOG0634|consen  262 SPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKR  341 (472)
T ss_pred             CccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHH
Confidence             00010010  01222            33899999999999999999866654422                       


Q ss_pred             ------hh-------hHHHHHHHHHHHHHhc------------cCceeEEEEe-------cc-cHHHHHHHHHHHHCCcE
Q psy11784        184 ------LD-------DNRPSGKYLVRPLGIN------------LHIFWCLILL-------SI-TYYLYRYTRRMKEAKII  230 (284)
Q Consensus       184 ------l~-------~~~~~~~~l~~~L~~~------------~G~~~~i~~~-------~~-~~~~~~~~~~l~~~Gv~  230 (284)
                            ++       .+..+...+...|.+-            .|+++++++.       +. ......+...+.++||.
T Consensus       342 wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~  421 (472)
T KOG0634|consen  342 WGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVK  421 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeE
Confidence                  11       2223333444444432            7889999984       11 12334455667799999


Q ss_pred             EeecCC-----C---CC-EEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        231 VANEGE-----Y---GN-VLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       231 ~~~~~~-----~---~~-~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +.++..     .   .+ .+|++.++. +.|++++++++|..++++-
T Consensus       422 ~v~G~~F~v~p~~s~~kiffRls~a~a-~~e~l~~g~~rf~~~ike~  467 (472)
T KOG0634|consen  422 LVCGSWFMVDPESSWSKIFFRLSIAFA-EPEKLDEGIERFGSVIKEH  467 (472)
T ss_pred             EecCceeEEcCccCCCcceEEEEeecC-CHHHHHHHHHHHHHHHHHH
Confidence            986531     1   23 789987766 7889999999999999874

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=98.82  E-value=3.1e-07  Score=85.10  Aligned_cols=92  Identities=13%  Similarity=0.155  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++++.++.  .++.+|++|...+..|.+.+    +++|.++|++||+++|+||+++ |+.  .. ..   ..|  .|+
T Consensus       126 ~~~l~~~i~~--~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a~~~~--~~-~l---~~G--aDi  191 (385)
T PRK08574        126 TEDIIEAIKE--GRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFATPLL--YR-PL---RHG--ADF  191 (385)
T ss_pred             HHHHHHhcCc--cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcccc--CC-hh---hhC--CcE
Confidence            4566666641  25788999988888888777    8999999999999999999995 321  11 11   123  476


Q ss_pred             E--EecccccC-Ccc-eeEEEe-cHHHHHhch
Q psy11784        156 I--TVGKPMGN-GMP-IGAVIT-SRKIAESLN  182 (284)
Q Consensus       156 v--~~sK~l~~-G~p-~gav~~-~~~i~~~~~  182 (284)
                      +  +++|.++| |-. .|++++ ++++.+.+.
T Consensus       192 vv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~  223 (385)
T PRK08574        192 VVHSLTKYIAGHNDVVGGVAVAWSGEFLEELW  223 (385)
T ss_pred             EEeeCceeecCCCCceeEEEEECcHHHHHHHH
Confidence            6  56799986 433 354555 566666543

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=98.81  E-value=3.1e-07  Score=84.95  Aligned_cols=91  Identities=16%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++   +++.+|++|...+..|.+.+    +++|.++|++||+++|+|++++.. ..+.      ..+...|++
T Consensus       124 ~e~l~~ai~---~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~------p~~~gaDiv  189 (380)
T PRK06176        124 LSQIKKAIK---PNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQN------PLLLGADIV  189 (380)
T ss_pred             HHHHHHhcC---cCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCC------ccccCCCEE
Confidence            456666654   46889999977777787776    999999999999999999999732 1122      123346887


Q ss_pred             Eec--ccccC-C-cceeEEEec-HHHHHhc
Q psy11784        157 TVG--KPMGN-G-MPIGAVITS-RKIAESL  181 (284)
Q Consensus       157 ~~s--K~l~~-G-~p~gav~~~-~~i~~~~  181 (284)
                      ++|  |.++| | .-.|+++++ +++.+.+
T Consensus       190 v~S~tK~l~g~~d~~gG~vv~~~~~~~~~~  219 (380)
T PRK06176        190 VHSGTKYLGGHSDVVAGLVTTNNEALAQEI  219 (380)
T ss_pred             EecCceeccCCccceeeEEEecHHHHHHHH
Confidence            654  99976 3 234556664 4554433

>PLN02590 probable tyrosine decarboxylase

Probab=98.80  E-value=2.7e-06  Score=81.72  Aligned_cols=189  Identities=11%  Similarity=0.047  Sum_probs=118.2

Q ss_pred             HHHHHHHHHhc-CCC--eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEAH-RDN--IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~-~~~--vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .+.|++.|++. ..+  ..+|+.----...|.+-|    |++|.++|++||++|.+|=++.|+...-. -+.....|+ .
T Consensus       271 ~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~-~~r~~~~Gie~  345 (539)
T PLN02590        271 PESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICP-EYRKFIDGIEN  345 (539)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcCh-hhHHHhcCCcc
Confidence            67788888632 122  445554444445677777    99999999999999999988887632211 011112354 3


Q ss_pred             CcEEEe--cccccCCcceeEEEecHH--HHHhchh---------------------------------------------
Q psy11784        153 PDIITV--GKPMGNGMPIGAVITSRK--IAESLNC---------------------------------------------  183 (284)
Q Consensus       153 pDiv~~--sK~l~~G~p~gav~~~~~--i~~~~~~---------------------------------------------  183 (284)
                      .|-+++  -|.+...++.|++++++.  +.+.+..                                             
T Consensus       346 ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G  425 (539)
T PLN02590        346 ADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSEN  425 (539)
T ss_pred             CCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHH
Confidence            687776  499988889999998753  1111100                                             


Q ss_pred             ----hhhHHHHHHHHHHHHHhccCc---------eeEEEEecc-------cHHHHHHHHHHHHCCcEEeecCC--CCCEE
Q psy11784        184 ----LDDNRPSGKYLVRPLGINLHI---------FWCLILLSI-------TYYLYRYTRRMKEAKIIVANEGE--YGNVL  241 (284)
Q Consensus       184 ----l~~~~~~~~~l~~~L~~~~G~---------~~~i~~~~~-------~~~~~~~~~~l~~~Gv~~~~~~~--~~~~l  241 (284)
                          +++.-+++++|.+.|++.-++         .+.+...+.       .....++.+++.+.|.+......  +...|
T Consensus       426 ~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~l  505 (539)
T PLN02590        426 LRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVL  505 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEE
Confidence                346667778888888764111         112222221       12345677778777765543211  22478


Q ss_pred             EEEc-CCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        242 LFLP-AMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       242 r~~p-~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      |++. +...+++|++.+++.|.+...++.+
T Consensus       506 R~~i~n~~T~~~dv~~~~~~i~~~a~~~~~  535 (539)
T PLN02590        506 RFAVGAPLTEEKHVTEAWQIIQKHASKFTR  535 (539)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            8865 4456899999999999998877753

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.79  E-value=7.3e-07  Score=83.84  Aligned_cols=74  Identities=19%  Similarity=0.166  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++|.+.+..|.+.+    +++|.++|++||+++|+|++++. +...      .......|++
T Consensus       145 ~e~l~~ai~---~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a~-~~~~------~pl~~GaDiv  210 (436)
T PRK07812        145 LDAWRAAVR---PNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIAT-PYLI------RPLEHGADIV  210 (436)
T ss_pred             HHHHHHhCC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc-cccC------CchhcCCCEE
Confidence            556666554   56889999999999999988    99999999999999999998852 1111      1122347776


Q ss_pred             --EecccccC
Q psy11784        157 --TVGKPMGN  164 (284)
Q Consensus       157 --~~sK~l~~  164 (284)
                        +++|.++|
T Consensus       211 v~S~tK~lgg  220 (436)
T PRK07812        211 VHSATKYLGG  220 (436)
T ss_pred             EEecccccCC
Confidence              46799985

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=98.79  E-value=9.3e-08  Score=87.32  Aligned_cols=87  Identities=15%  Similarity=0.219  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++   +++.+|++..+++..|.+.+    +++|.++|++||+++|+|++|. +|..     ..+......|++
T Consensus       128 ~~~l~~~l~---~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~-----~~~~~~~~~D~~  194 (353)
T TIGR03235       128 VDELADAIR---PDTLLVSIMHVNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKI-----TVDLSADRIDLI  194 (353)
T ss_pred             HHHHHHhCC---CCCEEEEEEcccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCc-----cccccccCCCEE
Confidence            566776664   45788888999999998887    8999999999999999999996 4322     112122358888


Q ss_pred             Eec--ccccCCcceeEEEecHHH
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKI  177 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i  177 (284)
                      +++  |.++ -..+|+++++++.
T Consensus       195 ~~s~~K~~g-p~g~g~l~~~~~~  216 (353)
T TIGR03235       195 SCSGHKIYG-PKGIGALVIRKRG  216 (353)
T ss_pred             EeehhhcCC-CCceEEEEEccCc
Confidence            877  9743 1237888888764

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.79  E-value=5.5e-07  Score=84.60  Aligned_cols=83  Identities=23%  Similarity=0.299  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +++.+|++|...+..|.+.+    +++|.++|++||+++|+|++++.    +.   .........|++
T Consensus       139 ~e~l~~ai~---~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a~----~~---~~~pl~~gaDiv  204 (431)
T PRK08248        139 PENFEAAIT---DKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFAS----PY---LLRPIEHGADIV  204 (431)
T ss_pred             HHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCCc----cc---cCChhHcCCCEE
Confidence            566777664   45788999977777788777    89999999999999999999851    11   111112347777


Q ss_pred             E--ecccccC-CcceeEEEe
Q psy11784        157 T--VGKPMGN-GMPIGAVIT  173 (284)
Q Consensus       157 ~--~sK~l~~-G~p~gav~~  173 (284)
                      +  ++|.+++ |..+|++++
T Consensus       205 v~S~tK~lgg~g~~~Gg~v~  224 (431)
T PRK08248        205 VHSATKFIGGHGTSIGGVIV  224 (431)
T ss_pred             EEcCccccCCCCCceEEEEE
Confidence            5  5699987 566766665

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=98.78  E-value=1.6e-06  Score=74.57  Aligned_cols=181  Identities=17%  Similarity=0.131  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         75 KYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        75 ~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .|.+.++++.++.++.++..++--+-|+.|.++.    -+.+.++|++||++|++.=+|| .||.-     .....+.+|
T Consensus       141 ~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp-----vs~ke~g~D  210 (382)
T COG1103         141 GYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP-----VSGKEIGAD  210 (382)
T ss_pred             HHHHHHHHHHhccCCCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc-----ccccccCCC
Confidence            3456677777655555777777777888888887    8899999999999999999998 55532     233457899


Q ss_pred             EEEec--ccccCCcceeEEEecHHHHHhchh--------------------------h---hhHH----------HHHHH
Q psy11784        155 IITVG--KPMGNGMPIGAVITSRKIAESLNC--------------------------L---DDNR----------PSGKY  193 (284)
Q Consensus       155 iv~~s--K~l~~G~p~gav~~~~~i~~~~~~--------------------------l---~~~~----------~~~~~  193 (284)
                      +++-|  |+++..-|+|.+.++++..+.+..                          +   -++.          ++.++
T Consensus       211 FiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~  290 (382)
T COG1103         211 FIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARW  290 (382)
T ss_pred             EEEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            98776  889876699999999998876533                          0   0222          34556


Q ss_pred             HHHHHHhccCce-----------eEEEEec-------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHH
Q psy11784        194 LVRPLGINLHIF-----------WCLILLS-------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       194 l~~~L~~~~G~~-----------~~i~~~~-------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id  255 (284)
                      |.+.|.++-|..           .-++-..       ......-+.++|+++||.-...+ ...++.++ -+..|.|+++
T Consensus       291 fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~G-~Tk~~K~s-vyGl~~Eqve  368 (382)
T COG1103         291 FVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQPG-QTKYFKLS-VYGLSWEQVE  368 (382)
T ss_pred             HHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCccccccC-ceeEEEEE-eecCCHHHHH
Confidence            666666652222           1111110       01122346778888888754322 13455554 4678999999


Q ss_pred             HHHHHHHHHHHH
Q psy11784        256 FIVSTLNRIFTS  267 (284)
Q Consensus       256 ~~~~~l~~~l~~  267 (284)
                      ..++++++++.+
T Consensus       369 ~V~~afkeI~ek  380 (382)
T COG1103         369 YVVDAFKEIAEK  380 (382)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.76  E-value=7.1e-07  Score=82.51  Aligned_cols=172  Identities=14%  Similarity=0.086  Sum_probs=106.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhC-CEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIG-GVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g-~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++++.++   +++.+|++|+..+....++.    +++|.++|+++| +++|+|......       +.+.....-.|+
T Consensus       130 ~~~l~~~l~---~~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~atp-------~~~~pL~~GaDi  195 (386)
T PF01053_consen  130 LEALEAALR---PNTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFATP-------YNQNPLELGADI  195 (386)
T ss_dssp             HHHHHHHHC---TTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTHT-------TTC-GGGGT-SE
T ss_pred             HHHHHhhcc---ccceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeeccccce-------eeeccCcCCceE
Confidence            678888886   47999999998887666666    999999999998 999999877522       122222333677


Q ss_pred             EE--ecccccC-C-cceeEEEec--HHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        156 IT--VGKPMGN-G-MPIGAVITS--RKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       156 v~--~sK~l~~-G-~p~gav~~~--~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      ++  ..|-++| | .-.|+++++  +++++.+..                           +++..+++..+.+.|++. 
T Consensus       196 vv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp  275 (386)
T PF01053_consen  196 VVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHP  275 (386)
T ss_dssp             EEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             EEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence            75  5699986 3 456777765  466665443                           345566667777777665 


Q ss_pred             -------------------------cCceeEEEEecccHHHHHHHHHHHH--CCcE--------Eeec------------
Q psy11784        202 -------------------------LHIFWCLILLSITYYLYRYTRRMKE--AKII--------VANE------------  234 (284)
Q Consensus       202 -------------------------~G~~~~i~~~~~~~~~~~~~~~l~~--~Gv~--------~~~~------------  234 (284)
                                               .|-++++++......+..|.+.|.=  .|.-        ..|.            
T Consensus       276 ~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~  355 (386)
T PF01053_consen  276 KVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSLGGVESLISHPASTSHRSLSPEER  355 (386)
T ss_dssp             TEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHH
T ss_pred             CCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhcCCcccccccccchhhccCChhhh
Confidence                                     4558899996333466777777641  1211        1111            


Q ss_pred             ---CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        235 ---GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       235 ---~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                         +...+.||++.-    -|+.+.+++-|+++++
T Consensus       356 ~~~Gi~~~liRlSvG----lEd~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  356 AEAGISDGLIRLSVG----LEDPDDLIADLEQALE  386 (386)
T ss_dssp             HHTTS-TTEEEEE------SS-HHHHHHHHHHHHH
T ss_pred             hccCCCCCeeEEEec----cCCHHHHHHHHHHhcC
Confidence               112356788533    3667888888877764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK05939 hypothetical protein; Provisional

Probab=98.74  E-value=8.2e-07  Score=82.62  Aligned_cols=83  Identities=16%  Similarity=0.212  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++.+|++|.+.+..|.+.+    +++|.++|++||+++|+|++|+..    .   .++......|++
T Consensus       121 ~e~l~~~l~---~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a~~----~---~~~~~~~gaDiv  186 (397)
T PRK05939        121 VQNVAAAIR---PNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMTSP----W---LFRPKDVGASLV  186 (397)
T ss_pred             HHHHHHhCC---CCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCcccc----c---ccCccccCCEEE
Confidence            566777664   56889999998888887766    999999999999999999998521    1   112222235666


Q ss_pred             --EecccccC-CcceeEEEe
Q psy11784        157 --TVGKPMGN-GMPIGAVIT  173 (284)
Q Consensus       157 --~~sK~l~~-G~p~gav~~  173 (284)
                        +++|.++| |..+|+++.
T Consensus       187 v~S~sK~~~g~g~~igg~v~  206 (397)
T PRK05939        187 INSLSKYIAGHGNALGGAVT  206 (397)
T ss_pred             EecCeecccCCCCeEEEEEe
Confidence              56799997 666666655

>PRK02769 histidine decarboxylase; Provisional

Probab=98.72  E-value=6.1e-06  Score=76.31  Aligned_cols=171  Identities=18%  Similarity=0.204  Sum_probs=114.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhC---CEEEEecccccCcccc----Ccccccccc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIG---GVVIADEIQCGMGRSG----SHFWAFQTQ  149 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g---~llI~DEv~tG~gr~G----~~~~a~~~~  149 (284)
                      .++|++.++..+..+..|++--+..+.|.+.|    +++|.++|++||   +++.+|=+|.|+ ..-    ...+.+.  
T Consensus       147 ~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~-~~p~~~~~~~~d~~--  219 (380)
T PRK02769        147 YDDLISKIKENKNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGM-ILPFVNNPPPFSFA--  219 (380)
T ss_pred             HHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccce-eecccCccccCCcc--
Confidence            67888888754334777777777778898888    999999999998   699999999864 211    0001111  


Q ss_pred             CCCCcEEEec--ccccCCcceeEEEecHHHHHhchh---------------------------------------hhhHH
Q psy11784        150 GAVPDIITVG--KPMGNGMPIGAVITSRKIAESLNC---------------------------------------LDDNR  188 (284)
Q Consensus       150 g~~pDiv~~s--K~l~~G~p~gav~~~~~i~~~~~~---------------------------------------l~~~~  188 (284)
                      . ..|.++++  |.+++-++.|+++.+++..+.+..                                       .++..
T Consensus       220 ~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~  298 (380)
T PRK02769        220 D-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCL  298 (380)
T ss_pred             C-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence            1 57888876  877666889999999877665421                                       33667


Q ss_pred             HHHHHHHHHHHhccCceeE-------EEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        189 PSGKYLVRPLGINLHIFWC-------LILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       189 ~~~~~l~~~L~~~~G~~~~-------i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                      ++.+++.++|++. |+-..       +.+. ...  ..+     .+|..+.+.   .+.+++..-..+|++.+|.+++-|
T Consensus       299 ~la~~l~~~L~~~-g~~~~~~p~~~~v~f~-~~~--~~~-----~~~w~l~~~---~~~~hi~~~~~~~~~~~~~f~~dl  366 (380)
T PRK02769        299 DMAQYAVDRLQAN-GIPAWRNPNSITVVFP-CPS--ERI-----WKKWHLATS---GNQAHIITMPHHNKQQIDSLIDEL  366 (380)
T ss_pred             HHHHHHHHHHHhC-CCEEEcCCCceEEEEc-CCC--HHH-----HhCeeEccc---CCEEEEEECCCCCHHHHHHHHHHH
Confidence            7788888888773 33211       1121 111  122     156666543   346777666677899999999888


Q ss_pred             HHHHHH
Q psy11784        262 NRIFTS  267 (284)
Q Consensus       262 ~~~l~~  267 (284)
                      ...+..
T Consensus       367 ~~~~~~  372 (380)
T PRK02769        367 IFDLKN  372 (380)
T ss_pred             HHHHhc
Confidence            777653

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=98.70  E-value=4e-06  Score=77.49  Aligned_cols=176  Identities=18%  Similarity=0.159  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC--CC
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--VP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~--~p  153 (284)
                      .+++++.+...+ +++.+|++  + ...|...+    +++|.++|++||+++|.|++|+ +|-.    +.-...|.  .-
T Consensus       107 ~~~l~~~i~~~~~~~t~~v~~--~-~~~G~~~~----~~~i~~l~~~~~~~lI~D~a~a-~g~~----~~~~~~g~~~~~  174 (380)
T TIGR03588       107 EDALEKKLAAAKGKLPKAIVP--V-DFAGKSVD----MQAIAALAKKHGLKIIEDASHA-LGAE----YGGKPVGNCRYA  174 (380)
T ss_pred             HHHHHHHhhcccCCCceEEEE--e-CCCCccCC----HHHHHHHHHHcCCEEEEECCCc-ccCc----cCCEeCCCcccc
Confidence            567777776321 24566653  2 22465544    8999999999999999999998 3211    11122233  34


Q ss_pred             cEEEec----ccccCCcceeEEEec-HHHHHhchh---------------------------------------------
Q psy11784        154 DIITVG----KPMGNGMPIGAVITS-RKIAESLNC---------------------------------------------  183 (284)
Q Consensus       154 Div~~s----K~l~~G~p~gav~~~-~~i~~~~~~---------------------------------------------  183 (284)
                      |+.++|    |.++.| ..|+++.. +++.+.+..                                             
T Consensus       175 d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~q  253 (380)
T TIGR03588       175 DATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQ  253 (380)
T ss_pred             ceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHH
Confidence            888876    888654 34556653 444432210                                             


Q ss_pred             -------hhhHHHHHHHHHHHHHhccCc--------------eeEEEEec-ccHHHHHHHHHHHHCCcEEeecC-C----
Q psy11784        184 -------LDDNRPSGKYLVRPLGINLHI--------------FWCLILLS-ITYYLYRYTRRMKEAKIIVANEG-E----  236 (284)
Q Consensus       184 -------l~~~~~~~~~l~~~L~~~~G~--------------~~~i~~~~-~~~~~~~~~~~l~~~Gv~~~~~~-~----  236 (284)
                             +++-+++.+++.+.|..+.+.              +..+.+.. ......++.+.|.++||.++..- +    
T Consensus       254 L~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~  333 (380)
T TIGR03588       254 LKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQ  333 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccC
Confidence                   123344455666666554110              11111211 11356789999999999775210 0    


Q ss_pred             -----------CC-------CEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        237 -----------YG-------NVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       237 -----------~~-------~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                                 .+       +.|++-.....|++|++.+++.|++++
T Consensus       334 ~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       334 PYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             hhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence                       01       345654455579999999999998764

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.69  E-value=2.1e-06  Score=80.77  Aligned_cols=81  Identities=20%  Similarity=0.202  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.|.   +++.+|++|.+.+..|.+.+    +++|.++|++||+++|+|.+|+.    |. .  ......-.|++
T Consensus       139 ~~~l~~~i~---~~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a~----~~-~--~~pl~~GaD~v  204 (433)
T PRK08134        139 IDGWRAAIR---PNTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFTT----PY-L--LRPFEHGADLV  204 (433)
T ss_pred             HHHHHHhcC---CCCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCcc----cc-c--CCchhcCCCEE
Confidence            567777775   56888999987777788787    99999999999999999999851    21 1  11223457887


Q ss_pred             Eec--ccccC-CcceeEE
Q psy11784        157 TVG--KPMGN-GMPIGAV  171 (284)
Q Consensus       157 ~~s--K~l~~-G~p~gav  171 (284)
                      ++|  |.++| |-.+|.+
T Consensus       205 v~S~tK~l~g~g~~~gG~  222 (433)
T PRK08134        205 YHSATKFLGGHGTAIGGV  222 (433)
T ss_pred             EeccccccCCCCCceEEE
Confidence            665  88875 4333433

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=98.67  E-value=8.7e-06  Score=78.19  Aligned_cols=94  Identities=19%  Similarity=0.185  Sum_probs=62.6

Q ss_pred             HHHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .++|++.|++   .+..+.+|+.-....+.|.+-|    +++|.++|++||+++.+|=+|.|....-. -+.....|+ .
T Consensus       249 ~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~-~~r~~l~gle~  323 (522)
T TIGR03799       249 VDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSN-TYRHLLKGIER  323 (522)
T ss_pred             HHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCH-HHHHHhcCchh
Confidence            6777877762   2222444444333336788888    99999999999999999999875411000 001112455 6


Q ss_pred             CcEEEec--ccccCCcceeEEEecH
Q psy11784        153 PDIITVG--KPMGNGMPIGAVITSR  175 (284)
Q Consensus       153 pDiv~~s--K~l~~G~p~gav~~~~  175 (284)
                      .|.++++  |.+.+-+..|+++.++
T Consensus       324 aDSit~d~HK~l~~P~g~G~llvr~  348 (522)
T TIGR03799       324 ADSVTIDAHKQLYVPMGAGMVLFKD  348 (522)
T ss_pred             CCEEEEChhhcCCcCcccEEEEEeC
Confidence            8999887  9887778889998864

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=98.67  E-value=6.1e-06  Score=76.27  Aligned_cols=90  Identities=16%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++.+|+  |+. ..|...+    +++|.++|++||+++|.|++|+ +|..    +.-...|..-|+.
T Consensus       109 ~~~le~~i~---~~tk~Ii--p~~-~~G~~~d----~~~I~~la~~~~i~vIeDaa~~-~g~~----~~~~~~g~~~~~~  173 (376)
T TIGR02379       109 ETLIESAIT---HRTKAIV--PVH-YAGVACD----MDTIMALANKHQLFVIEDAAQG-VMST----YKGRALGSIGHLG  173 (376)
T ss_pred             HHHHHHhcC---cCceEEE--EeC-CCCCccC----HHHHHHHHHHCCCEEEEECccc-cCCc----cCCcccCCCCCEE
Confidence            456777664   3566665  443 3465555    8899999999999999999997 3321    1111234445888


Q ss_pred             Eec----ccccCCcceeEEEec-HHHHHhc
Q psy11784        157 TVG----KPMGNGMPIGAVITS-RKIAESL  181 (284)
Q Consensus       157 ~~s----K~l~~G~p~gav~~~-~~i~~~~  181 (284)
                      +||    |.++.|...|+++++ +++.+.+
T Consensus       174 ~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~  203 (376)
T TIGR02379       174 TFSFHETKNYTSGGEGGALLINDQAFIERA  203 (376)
T ss_pred             EEeCCCCCcCcccCCceEEEECCHHHHHHH
Confidence            898    999877677888775 5665543

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PLN02509 cystathionine beta-lyase

Probab=98.65  E-value=7.9e-07  Score=84.09  Aligned_cols=171  Identities=12%  Similarity=0.130  Sum_probs=105.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++.+|++|...+..|.+.+    +++|.++|++||+++|+||+|. .+-.+.      ..+...|++
T Consensus       207 ~e~l~~ai~---~~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a-~~~~~~------pl~~gaDiv  272 (464)
T PLN02509        207 LDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIM-SPVLSR------PLELGADIV  272 (464)
T ss_pred             HHHHHHhCC---cCCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCcc-ccccCC------hhhcCCcEE
Confidence            455665553   46789999999888887755    9999999999999999999985 222222      123346887


Q ss_pred             E--ecccccC-C-cceeEEEec-HHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 T--VGKPMGN-G-MPIGAVITS-RKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~--~sK~l~~-G-~p~gav~~~-~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +  ++|.++| | .-.|+++++ +.+.+.+..                           +++..++.+++.+.|++.   
T Consensus       273 v~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V  352 (464)
T PLN02509        273 MHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRV  352 (464)
T ss_pred             EecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            5  5699986 3 334566654 333332111                           345556667777777654   


Q ss_pred             -----------------------cCceeEEEEecccHHHHHHHHHHH--HCCc--------EEeec--------------
Q psy11784        202 -----------------------LHIFWCLILLSITYYLYRYTRRMK--EAKI--------IVANE--------------  234 (284)
Q Consensus       202 -----------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv--------~~~~~--------------  234 (284)
                                             .|.|+.+++ ...+.+.+|++.|.  ..++        +..|.              
T Consensus       353 ~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~-~~~~~~~~f~~~l~l~~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~  431 (464)
T PLN02509        353 KKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT-GSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREA  431 (464)
T ss_pred             cEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CCHHHHHHHHHcCCcceEcccCCCCCceeeCCcccccccCCHHHHHh
Confidence                                   366788887 34445666666554  1111        11111              


Q ss_pred             -CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        235 -GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       235 -~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                       +...+.||++.-    -|++|.+++-|+++++
T Consensus       432 ~Gi~~~liRlSvG----lE~~~DLi~Dl~~Al~  460 (464)
T PLN02509        432 RGLTEDLVRISAG----IEDVDDLISDLDIAFR  460 (464)
T ss_pred             cCCCCCeEEEEec----cCCHHHHHHHHHHHHc
Confidence             011356787543    3567777777777764

>KOG0633|consensus

Probab=98.64  E-value=4.5e-06  Score=71.51  Aligned_cols=178  Identities=17%  Similarity=0.190  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++.+.++ ....+.++++-+-....|... ..+.+.++.+.=+  +.++++||+|-.|.-.++   ....-.-.|.++
T Consensus       148 vdai~evl~-~ds~iK~~F~tSPgNPtg~~i-k~~di~KiLe~p~--nglVVvDEAYidFsg~~S---~~~lV~kYpNLi  220 (375)
T KOG0633|consen  148 VDAIAEVLE-LDSKIKCIFLTSPGNPTGSII-KEDDILKILEMPD--NGLVVVDEAYIDFSGVES---RMKLVKKYPNLI  220 (375)
T ss_pred             HHHHHHHHh-ccccceEEEEcCCCCCCcccc-cHHHHHHHHhCCC--CcEEEEeeeeEeeccccc---cchHhHhCCcee
Confidence            566666665 223466666554333345444 4444444443332  799999999987722222   222223347766


Q ss_pred             ---Eeccccc-CCcceeEEEecHHHHHhchh--------------------------h----hhHHHHHHHHHHHHHhc-
Q psy11784        157 ---TVGKPMG-NGMPIGAVITSRKIAESLNC--------------------------L----DDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       157 ---~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------------l----~~~~~~~~~l~~~L~~~-  201 (284)
                         |+||.+| .|+++|+...+..+++.+..                          +    +.+.+...+|...|.++ 
T Consensus       221 vlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~  300 (375)
T KOG0633|consen  221 VLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAKAPYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVP  300 (375)
T ss_pred             ehhhhhhhcCcceeEeecccccHHHHHHHHhccCCccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCc
Confidence               6899999 68999999999998887654                          1    12233344555555555 


Q ss_pred             ------cCc---eeEEEEe-cccHHHHHHHHHHH-HCCcEEeecCCC---CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        202 ------LHI---FWCLILL-SITYYLYRYTRRMK-EAKIIVANEGEY---GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       202 ------~G~---~~~i~~~-~~~~~~~~~~~~l~-~~Gv~~~~~~~~---~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                            .|.   |+-+++. .++..+.++..++. +.||.++-.+..   .+.+|++   .-|+||-+.+++.|+++
T Consensus       301 ~~~~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRit---vGt~EentvL~k~~K~~  374 (375)
T KOG0633|consen  301 FLNDYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT---VGTPEENTVLMKCLKQF  374 (375)
T ss_pred             cccCCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEE---cCCcccchHHHHHHHhh
Confidence                  222   3444443 34455666665555 789999854332   3689996   56888888888888765

>KOG1358|consensus

Probab=98.64  E-value=5.9e-07  Score=80.73  Aligned_cols=170  Identities=16%  Similarity=0.184  Sum_probs=109.4

Q ss_pred             eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCccccccccCCCC---cEEEec--cccc
Q psy11784         91 IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQGAVP---DIITVG--KPMG  163 (284)
Q Consensus        91 vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~g~~p---Div~~s--K~l~  163 (284)
                      -.-+++|.+.-+.|.+.|    +++|.++..||..-+|+||-.+ | .|++|+  +..+|+++.+   |+++.|  -+++
T Consensus       234 Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~SfG~lg~~Gr--GvteH~~v~~~~iDiv~~sm~~ala  307 (467)
T KOG1358|consen  234 RRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLSFGVLGKTGR--GVTEHFGVPITDIDIVTASMETALA  307 (467)
T ss_pred             eEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccccccccccCc--cccccCCCCccceeeeeeccccccc
Confidence            457889999999999999    9999999999999999999987 3 477886  4678998864   566543  4444


Q ss_pred             CCcceeEEEecHHHHH--hchh------------------------------hhhHHHHHHHHHHHHHhccCc-------
Q psy11784        164 NGMPIGAVITSRKIAE--SLNC------------------------------LDDNRPSGKYLVRPLGINLHI-------  204 (284)
Q Consensus       164 ~G~p~gav~~~~~i~~--~~~~------------------------------l~~~~~~~~~l~~~L~~~~G~-------  204 (284)
                      +|  -|+++++.-+.+  .+..                              .+.++.+...+...|+...++       
T Consensus       308 s~--GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~  385 (467)
T KOG1358|consen  308 SG--GGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPE  385 (467)
T ss_pred             cc--CceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhcCCceEEecCcC
Confidence            21  133333322221  1111                              112334444444444443222       


Q ss_pred             --eeEEEEec-------ccHHHHHHHHHHHHCCcEEeecC--------CCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        205 --FWCLILLS-------ITYYLYRYTRRMKEAKIIVANEG--------EYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       205 --~~~i~~~~-------~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                        +.-+.+.+       +.....+++..++.+|+++....        +-...||++....+|++|++.+.+.+++....
T Consensus       386 SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~  465 (467)
T KOG1358|consen  386 SPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASA  465 (467)
T ss_pred             CceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence              11222221       11235678888887798876432        12357999999999999999999999887654


Q ss_pred             H
Q psy11784        268 L  268 (284)
Q Consensus       268 ~  268 (284)
                      +
T Consensus       466 ~  466 (467)
T KOG1358|consen  466 V  466 (467)
T ss_pred             h
Confidence            3

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=98.64  E-value=4.3e-06  Score=78.54  Aligned_cols=183  Identities=16%  Similarity=0.158  Sum_probs=119.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh------CCEEEEecccccCcc---ccCcccccc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI------GGVVIADEIQCGMGR---SGSHFWAFQ  147 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tG~gr---~G~~~~a~~  147 (284)
                      .++|++.++   +++..|++--+..+.|.+.|    +++|.++|+++      |+++.+|=+|.|+-.   .++..+.+.
T Consensus       176 ~~~L~~~i~---~~t~lV~~t~g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~  248 (431)
T TIGR01788       176 PEQVVEAVD---ENTIGVVCILGTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR  248 (431)
T ss_pred             HHHHHHHHh---hCCeEEEEEeCCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC
Confidence            678888886   34667777667778899998    99999999999      999999999987421   232111111


Q ss_pred             ccCCCCcEEEec--ccccCCcceeEEEecHH--HHHhchh----------------------------------------
Q psy11784        148 TQGAVPDIITVG--KPMGNGMPIGAVITSRK--IAESLNC----------------------------------------  183 (284)
Q Consensus       148 ~~g~~pDiv~~s--K~l~~G~p~gav~~~~~--i~~~~~~----------------------------------------  183 (284)
                        ....|.++++  |.+.+...+|+++.+++  +.+.+..                                        
T Consensus       249 --~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~  326 (431)
T TIGR01788       249 --LPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRK  326 (431)
T ss_pred             --CCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHH
Confidence              1245777776  76544466788887654  2222100                                        


Q ss_pred             -hhhHHHHHHHHHHHHHhccC----------ceeEEEEecc---cHHHHHHHHHHHHCCcEEeec----CC-CCCEEEEE
Q psy11784        184 -LDDNRPSGKYLVRPLGINLH----------IFWCLILLSI---TYYLYRYTRRMKEAKIIVANE----GE-YGNVLLFL  244 (284)
Q Consensus       184 -l~~~~~~~~~l~~~L~~~~G----------~~~~i~~~~~---~~~~~~~~~~l~~~Gv~~~~~----~~-~~~~lr~~  244 (284)
                       +++..++.++|.++|++.-+          .++.+.+.+.   .....++.+.|.++|+.+...    .. +...+|+.
T Consensus       327 i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~  406 (431)
T TIGR01788       327 IMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIV  406 (431)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEE
Confidence             34666778888888877511          1122333221   234567899999999875321    11 22357877


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        245 PAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       245 p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      .--.++++.++++++.|..++..+
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       407 VREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHhh
Confidence            655668999999999999988765

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.64  E-value=2e-06  Score=80.91  Aligned_cols=83  Identities=14%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++|...+..|.+.+    +++|.++|+++|+++|+|.+++. |   . .......|  .|++
T Consensus       145 ~e~l~~~l~---~~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a~-g---~-~~~p~~~G--aDiv  210 (437)
T PRK05613        145 PESWQAAVQ---PNTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIAT-A---A-LVRPLELG--ADVV  210 (437)
T ss_pred             HHHHHHhCC---ccCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCcc-c---c-ccChHHhC--CCEE
Confidence            466777665   45778888877666677777    99999999999999999999852 2   1 11111233  5888


Q ss_pred             Eec--ccccC-CcceeEEEe
Q psy11784        157 TVG--KPMGN-GMPIGAVIT  173 (284)
Q Consensus       157 ~~s--K~l~~-G~p~gav~~  173 (284)
                      ++|  |.++| |--+|.+++
T Consensus       211 v~S~~K~l~G~gd~~gG~vv  230 (437)
T PRK05613        211 VASLTKFYTGNGSGLGGVLI  230 (437)
T ss_pred             EeeccceecCCCcceeEEEE
Confidence            765  98886 433344333

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=98.63  E-value=1.2e-06  Score=80.60  Aligned_cols=171  Identities=13%  Similarity=0.091  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++.+|++|...+..|....    +++|.++|+++|+++|+||++..    +.   .....+.-.|++
T Consensus       126 ~~~l~~~i~---~~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~----~~---~~~pl~~gaDiv  191 (364)
T PRK07269        126 EEELIAAIE---EDTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYS----PI---YQRPIELGADIV  191 (364)
T ss_pred             HHHHHHhcC---cCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc----cc---cCCchhhCCcEE
Confidence            456666664   45788999987776677665    99999999999999999999641    11   112234557888


Q ss_pred             Eec--ccccC-C-cceeEEEe-cHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 TVG--KPMGN-G-MPIGAVIT-SRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~~s--K~l~~-G-~p~gav~~-~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      ++|  |.++| | .-.|++++ ++++.+.+..                           +++-.++..++.+.|+..   
T Consensus       192 v~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v  271 (364)
T PRK07269        192 LHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAV  271 (364)
T ss_pred             EecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            764  98986 3 23466666 4566554432                           335556666777777653   


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHHH----------CCcEEeecC---------------CCCCEEEEEcCCCC
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMKE----------AKIIVANEG---------------EYGNVLLFLPAMCL  249 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~~----------~Gv~~~~~~---------------~~~~~lr~~p~l~~  249 (284)
                             .|.++++++. ..+.+.+|...+.-          +++++.|..               ...+.||++.-+  
T Consensus       272 ~~v~ypg~gg~~sf~~~-~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl--  348 (364)
T PRK07269        272 KEVLYTGKGGMISFKVA-DETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGI--  348 (364)
T ss_pred             cEEeCCCcCcEEEEEEC-CHHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--
Confidence                   5778888884 33444555554331          234443321               113577885433  


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy11784        250 TTENVLFIVSTLNRIFT  266 (284)
Q Consensus       250 t~~~id~~~~~l~~~l~  266 (284)
                        |+++.+++-|+++++
T Consensus       349 --E~~~dli~dl~~al~  363 (364)
T PRK07269        349 --EDARDLIADLKQALE  363 (364)
T ss_pred             --CCHHHHHHHHHHHhc
Confidence              567777777776653

>PLN03032 serine decarboxylase; Provisional

Probab=98.63  E-value=1e-05  Score=74.49  Aligned_cols=168  Identities=21%  Similarity=0.185  Sum_probs=106.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhC-----CEEEEecccccCccccCccccc--c--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIG-----GVVIADEIQCGMGRSGSHFWAF--Q--  147 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g-----~llI~DEv~tG~gr~G~~~~a~--~--  147 (284)
                      +++|++.|+.....+.+|++--...+.|.+-|    +++|.++|++||     +++.+|=+|.|+ .. .  +..  .  
T Consensus       148 ~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~~-p--~~~~~~~~  219 (374)
T PLN03032        148 YDDLERALAKNRDKPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL-MM-P--FVSRAPEV  219 (374)
T ss_pred             HHHHHHHHHHcCCCCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh-hh-h--ccCCCccc
Confidence            68888888754334566666555667788888    999999999997     589999998754 11 1  100  0  


Q ss_pred             ccCCCCcEEEec--ccccCCcceeEEEecHHHHHhchh---------------------------------------hhh
Q psy11784        148 TQGAVPDIITVG--KPMGNGMPIGAVITSRKIAESLNC---------------------------------------LDD  186 (284)
Q Consensus       148 ~~g~~pDiv~~s--K~l~~G~p~gav~~~~~i~~~~~~---------------------------------------l~~  186 (284)
                      .+....|.++++  |.++..++.|+++.+++..+.+..                                       +++
T Consensus       220 ~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~  299 (374)
T PLN03032        220 TFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQH  299 (374)
T ss_pred             CCCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            111247878776  766556789999999877664422                                       346


Q ss_pred             HHHHHHHHHHHHHhccCceeEE-------EEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHH
Q psy11784        187 NRPSGKYLVRPLGINLHIFWCL-------ILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVS  259 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~~G~~~~i-------~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~  259 (284)
                      .-++.+++.+.|++. |.....       -+. .. ...    . ..+|..+.+.   .+.+++..--.++++.+|++++
T Consensus       300 ~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~-~~-~~~----~-~~~~w~l~~~---~~~~hi~vm~~~~~~~id~fi~  368 (374)
T PLN03032        300 CMRNAHYLKDRLTEA-GLTCRLNELSSTVVFE-RP-MDE----A-FIKKWQLACE---GDIAHVVVMPNVTVEKLDEFVE  368 (374)
T ss_pred             HHHHHHHHHHHHHhC-CCcEEECCCceEEEEc-CC-CcH----h-Hhheeeeccc---CCEEEEEECCCCCHHHHHHHHH
Confidence            667788888888874 333211       121 11 111    1 2356655532   2456665555567899999988


Q ss_pred             HHHH
Q psy11784        260 TLNR  263 (284)
Q Consensus       260 ~l~~  263 (284)
                      -|.+
T Consensus       369 dl~~  372 (374)
T PLN03032        369 ELVE  372 (374)
T ss_pred             HHhc
Confidence            7754

>PRK04311 selenocysteine synthase; Provisional

Probab=98.62  E-value=3.5e-06  Score=79.73  Aligned_cols=178  Identities=17%  Similarity=0.123  Sum_probs=111.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceec--CCC--cccCChhHHHHHHHHHHHhCCEEEEecccccCccccC-----cccccc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFV--VHG--AVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-----HFWAFQ  147 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~--~~G--~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-----~~~a~~  147 (284)
                      .+++++.+.   +++++|+++...+  ..|  ..++    +++|.++|++||+++|+|....-++-.+.     .....+
T Consensus       206 ~~dle~aI~---~~TklV~~vh~sN~~i~G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~  278 (464)
T PRK04311        206 LRDYEQAIN---ENTALLLKVHTSNYRIEGFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQE  278 (464)
T ss_pred             HHHHHHhcC---ccCeEEEEEcCCCccccccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhh
Confidence            566777665   4578888776543  233  3455    99999999999999999984211111111     011111


Q ss_pred             ccCCCCcEEEec--ccccCCcceeEEEecHHHHHhchh------------------------------------------
Q psy11784        148 TQGAVPDIITVG--KPMGNGMPIGAVITSRKIAESLNC------------------------------------------  183 (284)
Q Consensus       148 ~~g~~pDiv~~s--K~l~~G~p~gav~~~~~i~~~~~~------------------------------------------  183 (284)
                      ....-.|++++|  |.++|.. .|++++++++++.+..                                          
T Consensus       279 ~l~~GaDiv~fSg~K~LgGp~-~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~  357 (464)
T PRK04311        279 LLAAGVDLVTFSGDKLLGGPQ-AGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTR  357 (464)
T ss_pred             HHhcCCcEEEecCcccccCCc-eEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcC
Confidence            122457999998  9998753 6888899988876652                                          


Q ss_pred             -hhhHHHHHHHHHHHHHhcc-----------------Cce-------eEEEEecccHHHHHHHHHHHHC--CcEEeecCC
Q psy11784        184 -LDDNRPSGKYLVRPLGINL-----------------HIF-------WCLILLSITYYLYRYTRRMKEA--KIIVANEGE  236 (284)
Q Consensus       184 -l~~~~~~~~~l~~~L~~~~-----------------G~~-------~~i~~~~~~~~~~~~~~~l~~~--Gv~~~~~~~  236 (284)
                       +++..++++.+.+.|+...                 |.+       +++.+.+.......+.+.|++.  .|+.+   .
T Consensus       358 ~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r---~  434 (464)
T PRK04311        358 SPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGR---I  434 (464)
T ss_pred             CHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEE---E
Confidence             2355556666666665421                 111       1222222223467788888863  56665   3


Q ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        237 YGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       237 ~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ..+.+.+- +-++.++|++.++++|.+++.
T Consensus       435 ~~~~~~ld-~r~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        435 EDGRLLLD-LRTLEEEDEERLAAALLEALN  463 (464)
T ss_pred             ECCEEEEE-eCcCCHHHHHHHHHHHHHHhh
Confidence            34666665 457789999999999988753

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=98.62  E-value=1.7e-06  Score=79.97  Aligned_cols=161  Identities=16%  Similarity=0.059  Sum_probs=105.0

Q ss_pred             EEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCCcceeEE
Q psy11784         94 LICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNGMPIGAV  171 (284)
Q Consensus        94 vi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G~p~gav  171 (284)
                      |.+--+....|.+.|    +++|.+  ++||+++++|=+|+ +|-.   -+-.+  .  .|++++|  |++++...+|.+
T Consensus       140 V~~~h~~t~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~~---pidv~--~--iD~~~~s~~K~l~~P~G~g~l  205 (378)
T PRK03080        140 VVFTWNGTTTGVRVP----VARWIG--ADREGLTICDATSA-AFAL---PLDWS--K--LDVYTFSWQKVLGGEGGHGMA  205 (378)
T ss_pred             EEEEecCCccceecc----chhhcc--ccCCCeEEEecccc-cccC---CCCHH--H--CcEEEEehhhhCCCCCceEEE
Confidence            445455556787887    888888  78999999998887 4321   12222  2  4888776  999764458888


Q ss_pred             EecHHHHHhch-------------------h------------------------h-------------hhHHHHHHHHH
Q psy11784        172 ITSRKIAESLN-------------------C------------------------L-------------DDNRPSGKYLV  195 (284)
Q Consensus       172 ~~~~~i~~~~~-------------------~------------------------l-------------~~~~~~~~~l~  195 (284)
                      ..+++..+.+.                   .                        +             ++.+++.++++
T Consensus       206 ~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~  285 (378)
T PRK03080        206 ILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLY  285 (378)
T ss_pred             EECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            88887754321                   0                        1             13344555666


Q ss_pred             HHHHhccC-------------ceeEEEEecc--cHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHHHHH
Q psy11784        196 RPLGINLH-------------IFWCLILLSI--TYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       196 ~~L~~~~G-------------~~~~i~~~~~--~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~~  258 (284)
                      +.|+++.+             .++.+.+ +.  ......+...+.++|+++..++.  ..+.+|+++....|++||+.++
T Consensus       286 ~~l~~~~~~~~~~~~~~~~s~~i~~~~~-~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~  364 (378)
T PRK03080        286 DWAEKTPWATPLVADPATRSNTSVTLDF-VDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALT  364 (378)
T ss_pred             HHHHhCCCcccccCCccccCccEEEEEc-CCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHH
Confidence            66665411             1222222 22  01234567777788988875432  2478999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy11784        259 STLNRIFTSLQ  269 (284)
Q Consensus       259 ~~l~~~l~~~~  269 (284)
                      +.|+++++++.
T Consensus       365 ~al~~~~~~~~  375 (378)
T PRK03080        365 PWLDWAFERLK  375 (378)
T ss_pred             HHHHHHHHHHh
Confidence            99999887653

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=98.59  E-value=4.5e-06  Score=77.22  Aligned_cols=87  Identities=23%  Similarity=0.311  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+.+++.+.   +++.+|+  |+.- .|...+    +++|.++|++||+++|.|++|+ |.-..|+ .  ....|.  ++
T Consensus       111 ~~~l~~~i~---~~tkav~--~~~~-~G~~~d----~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~-~--~g~~g~--~~  175 (379)
T PRK11658        111 PEAIEAAIT---PRTKAII--PVHY-AGAPAD----LDAIRAIGERYGIPVIEDAAHAVGTYYKGR-H--IGARGT--AI  175 (379)
T ss_pred             HHHHHHhcc---cCCeEEE--EeCC-CCCcCC----HHHHHHHHHHcCCeEEEECCCccCCeECCe-e--cCCCCC--EE
Confidence            566777664   3466665  3322 455544    8999999999999999999997 4322232 1  112333  66


Q ss_pred             EEec--ccccCCcceeEEEec-HHHHH
Q psy11784        156 ITVG--KPMGNGMPIGAVITS-RKIAE  179 (284)
Q Consensus       156 v~~s--K~l~~G~p~gav~~~-~~i~~  179 (284)
                      .+|+  |.+++| ..|+++.+ +++.+
T Consensus       176 ~Sf~~~K~l~~g-~GG~v~~~~~~~~~  201 (379)
T PRK11658        176 FSFHAIKNITCA-EGGLVVTDDDELAD  201 (379)
T ss_pred             EeCCCCCcCccc-CceEEEECCHHHHH
Confidence            6665  777654 45666664 56544

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=98.58  E-value=7.8e-06  Score=74.84  Aligned_cols=177  Identities=17%  Similarity=0.205  Sum_probs=117.9

Q ss_pred             HHHHHHHHHhcCCC--eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDN--IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~--vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+++++.+++.++-  ++.+-.|.   +.|+..|    +++|.++|++||+++|+|-|-+ +|  |. .+-.+.+|+  |
T Consensus       119 p~~v~~~L~~~~~~~~V~~vH~ET---STGvlnp----l~~I~~~~k~~g~l~iVDaVsS-~G--g~-~~~vd~wgi--D  185 (383)
T COG0075         119 PEEVEEALDKDPDIKAVAVVHNET---STGVLNP----LKEIAKAAKEHGALLIVDAVSS-LG--GE-PLKVDEWGI--D  185 (383)
T ss_pred             HHHHHHHHhcCCCccEEEEEeccC---cccccCc----HHHHHHHHHHcCCEEEEEeccc-CC--Cc-ccchhhcCc--c
Confidence            57888888843322  44445554   4677777    9999999999999999997776 44  22 344455554  5


Q ss_pred             EEEe--cccccCCcceeEEEecHHHHHhchh-------------------------------------------------
Q psy11784        155 IITV--GKPMGNGMPIGAVITSRKIAESLNC-------------------------------------------------  183 (284)
Q Consensus       155 iv~~--sK~l~~G~p~gav~~~~~i~~~~~~-------------------------------------------------  183 (284)
                      +++-  -|+|++-=.++.+..+++..+.+..                                                 
T Consensus       186 v~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~  265 (383)
T COG0075         186 VAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEA  265 (383)
T ss_pred             EEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence            5544  4999863337788888887776543                                                 


Q ss_pred             -hhhHHHHHHHHHHHHHhccCceeEE------------EEecccHHHHHHHHHHHHC-CcEEeecC--CCCCEEEEEcCC
Q psy11784        184 -LDDNRPSGKYLVRPLGINLHIFWCL------------ILLSITYYLYRYTRRMKEA-KIIVANEG--EYGNVLLFLPAM  247 (284)
Q Consensus       184 -l~~~~~~~~~l~~~L~~~~G~~~~i------------~~~~~~~~~~~~~~~l~~~-Gv~~~~~~--~~~~~lr~~p~l  247 (284)
                       .++-+.+++.++++++++ |+-...            .. |......++...++++ |+.+.++.  ..+..+||---=
T Consensus       266 r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~-P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG  343 (383)
T COG0075         266 RIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKV-PEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMG  343 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEEC-CCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCc
Confidence             235666777788888874 442221            11 3332333444456654 88887542  134688987544


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q psy11784        248 CLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~~  268 (284)
                      ..+..++..++.+|+.++.++
T Consensus       344 ~~~~~dv~~~l~ale~~L~~~  364 (383)
T COG0075         344 NVRPEDVLAALAALEAALREL  364 (383)
T ss_pred             cCCHHHHHHHHHHHHHHHHHc
Confidence            579999999999999999987

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=98.57  E-value=1.3e-06  Score=78.26  Aligned_cols=84  Identities=19%  Similarity=0.260  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.|+   +++.+|.+|.+.+.++.++.    +++|.++|+++|++||+|...+.       .+-++....-.|||
T Consensus       137 ~~~~~~aI~---~nTkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVDNT~at-------pyl~rP~~hGADIV  202 (426)
T COG2873         137 PENFEAAID---ENTKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFAT-------PYLCRPIEHGADIV  202 (426)
T ss_pred             HHHHHHHhC---cccceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEecCCCc-------ceecchhhcCCCEE
Confidence            466777776   67999999999998888888    99999999999999999987652       23445556668888


Q ss_pred             E--ecccccC-CcceeEEEec
Q psy11784        157 T--VGKPMGN-GMPIGAVITS  174 (284)
Q Consensus       157 ~--~sK~l~~-G~p~gav~~~  174 (284)
                      +  .+|.+|| |-.+|.++..
T Consensus       203 vHS~TK~igGhGt~iGG~iVD  223 (426)
T COG2873         203 VHSATKYIGGHGTAIGGVIVD  223 (426)
T ss_pred             EEeecccccCCccccceEEEe
Confidence            5  6799997 7777777754

>PRK07671 cystathionine beta-lyase; Provisional

Probab=98.55  E-value=2.5e-06  Score=78.82  Aligned_cols=134  Identities=14%  Similarity=0.129  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++   +++.+|++|...+..|....    +++|.++|+++|+++|+||++... ..+. .     .....|++
T Consensus       124 ~~~l~~ai~---~~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~~-~~~~-p-----~~~g~Div  189 (377)
T PRK07671        124 LEEVEEAIR---PNTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMTP-YWQS-P-----ISLGADIV  189 (377)
T ss_pred             HHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCcc-ccCC-h-----hhhCCeEE
Confidence            466666664   46789999877666676665    999999999999999999998631 1122 1     12335776


Q ss_pred             E--ecccccCC--cceeEEEe-cHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 T--VGKPMGNG--MPIGAVIT-SRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~--~sK~l~~G--~p~gav~~-~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +  ++|.++|.  .-.|++++ ++++++.+..                           +++..++...+.+.|++.   
T Consensus       190 v~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~tl~~R~~~~~~na~~la~~L~~~~~v  269 (377)
T PRK07671        190 LHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAV  269 (377)
T ss_pred             EecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcChHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence            4  57999852  22344555 4566654433                           335556666666666643   


Q ss_pred             -----------------------cCceeEEEEecccHHHHHHHHHHH
Q psy11784        202 -----------------------LHIFWCLILLSITYYLYRYTRRMK  225 (284)
Q Consensus       202 -----------------------~G~~~~i~~~~~~~~~~~~~~~l~  225 (284)
                                             .|.++.+++ ...+.+.+|...|.
T Consensus       270 ~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~-~~~~~~~~f~~~l~  315 (377)
T PRK07671        270 NKVYYPGLPSHPNHELAKEQANGFGGMISFDV-GSEETANKVLERLQ  315 (377)
T ss_pred             eEEECCCCCCCccHHHHHhhCCCCCceEEEEe-CCHHHHHHHHHhCC
Confidence                                   466888888 44455666666554

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=98.54  E-value=1.3e-05  Score=75.57  Aligned_cols=81  Identities=20%  Similarity=0.249  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcc--ccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGR--SGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr--~G~~~~a~~~~g~~pD  154 (284)
                      .+.+++.+.   +++.+|++.+..|.       +..+++|+++|++||++||.|++|+ +|-  .|+      ..|-.-|
T Consensus       149 ~~~le~~i~---~~tkaVi~~~~~G~-------p~dl~~I~~la~~~gi~vIeDaa~a-~G~~~~g~------~~G~~gd  211 (438)
T PRK15407        149 ASLLEAAVS---PKTKAIMIAHTLGN-------PFDLAAVKAFCDKHNLWLIEDNCDA-LGSTYDGR------MTGTFGD  211 (438)
T ss_pred             HHHHHHHcC---cCCeEEEEeCCCCC-------hhhHHHHHHHHHHCCCEEEEECccc-hhhhcCCe------eeeccCc
Confidence            566776664   46888998886553       2348999999999999999999997 321  122      1222347


Q ss_pred             EEEec----ccccCCcceeEEEecH
Q psy11784        155 IITVG----KPMGNGMPIGAVITSR  175 (284)
Q Consensus       155 iv~~s----K~l~~G~p~gav~~~~  175 (284)
                      +.+||    |.++.| .-|+++.++
T Consensus       212 ~~~fSf~~~k~~~~g-eGG~l~t~d  235 (438)
T PRK15407        212 IATLSFYPAHHITMG-EGGAVFTND  235 (438)
T ss_pred             eEEEeCCCCCCcccc-CceEEEECC
Confidence            77765    666543 237777753

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=98.52  E-value=8e-06  Score=77.10  Aligned_cols=94  Identities=19%  Similarity=0.210  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEccee--cCCC--cccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc--c------c
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVF--VVHG--AVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH--F------W  144 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~--~~~G--~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~--~------~  144 (284)
                      .+++++.+.   +++++|+++...  ++.|  ..++    +++|.++|++||+++|+|-.   +|-.+..  +      .
T Consensus       201 l~dle~aI~---~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~~---sG~l~~~~~~gl~~~p~  270 (454)
T TIGR00474       201 LKDYEDAIT---ENTALLLKVHTSNYRIVGFTEEVS----IAELVALGREHGLPVMEDLG---SGSLVDLSRYGLPDEPT  270 (454)
T ss_pred             HHHHHHhcC---cCCEEEEEEccCcccccCCCCCCC----HHHHHHHHHHcCCeEEEECC---CcccccchhccCCCCcc
Confidence            466666664   557777777653  3345  3556    99999999999999999952   3222210  0      0


Q ss_pred             cccccCCCCcEEEec--ccccCCcceeEEEecHHHHHhc
Q psy11784        145 AFQTQGAVPDIITVG--KPMGNGMPIGAVITSRKIAESL  181 (284)
Q Consensus       145 a~~~~g~~pDiv~~s--K~l~~G~p~gav~~~~~i~~~~  181 (284)
                      ..+....-.|++++|  |.++|.. .|+++++++.++.+
T Consensus       271 ~~~~~~~GaDiv~fSg~K~LgGp~-~G~i~g~~~~i~~l  308 (454)
T TIGR00474       271 VQEVIAAGVDLVTFSGDKLLGGPQ-AGIIVGKKELIERL  308 (454)
T ss_pred             cccHhHcCCCEEEecCccccCCCe-EEEEEECHHHHHhh
Confidence            111223457999999  9998643 68888888877543

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=98.48  E-value=1.4e-05  Score=70.68  Aligned_cols=175  Identities=17%  Similarity=0.186  Sum_probs=113.7

Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc--cCCCCcEE
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT--QGAVPDII  156 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~--~g~~pDiv  156 (284)
                      ++++.+   .+++|.|++..|+--.|....    +.+|-+++++||++++.|=+|+-    |.  ...+.  .|+.--|-
T Consensus       158 ~~~~~~---~dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHsa----Ga--vp~~Lh~~gaDfaig  224 (407)
T COG3844         158 ALEEAI---TDDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHSA----GA--VPVDLHAAGADFAIG  224 (407)
T ss_pred             HHHHhh---ccceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhccc----CC--cceeecccCCCeeee
Confidence            445544   378999999999998898887    99999999999999999999971    21  12222  23222234


Q ss_pred             EecccccCCc-ceeEEEecHHHHHhchh---------------------------------------------------h
Q psy11784        157 TVGKPMGNGM-PIGAVITSRKIAESLNC---------------------------------------------------L  184 (284)
Q Consensus       157 ~~sK~l~~G~-p~gav~~~~~i~~~~~~---------------------------------------------------l  184 (284)
                      |--|-|+||- ..+++.+.++..+...+                                                   +
T Consensus       225 csyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i  304 (407)
T COG3844         225 CSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDI  304 (407)
T ss_pred             eeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCH
Confidence            5557776652 23444443333222111                                                   3


Q ss_pred             hhHHHHHH----HHHHHHHhccCceeEEEEe-c------------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEc-C
Q psy11784        185 DDNRPSGK----YLVRPLGINLHIFWCLILL-S------------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLP-A  246 (284)
Q Consensus       185 ~~~~~~~~----~l~~~L~~~~G~~~~i~~~-~------------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p-~  246 (284)
                      ..+++++-    ++.+.++... -..++++. |            ....+.+++++|.++||+.-..  .+++|||.| |
T Consensus       305 ~~lR~kSlaLTd~fieLvEa~~-~~~~l~l~tPr~~~~rGsqvS~~hp~~~~V~qaLi~rGVigD~R--~P~vlRfgftP  381 (407)
T COG3844         305 TELRKKSLALTDYFIELVEARC-EYYGLTLVTPRAHEERGSQVSLYHPHGYQVMQALIDRGVIGDFR--EPDVLRFGFTP  381 (407)
T ss_pred             HHHHHhhhHHHHHHHHHHHhcc-ccCCcEEeccchhhhccceeeEecCcHHHHHHHHHHcCcccccc--CCCeeeecCcc
Confidence            34555443    4444443321 11233332 1            0125788999999999998653  358999988 8


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        247 MCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       247 l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      +..+-.|+=.+++.|+++++...
T Consensus       382 lY~~~~DVw~AV~~L~evL~t~a  404 (407)
T COG3844         382 LYVSFVDVWDAVDALEEVLDTLA  404 (407)
T ss_pred             ceechhHHHHHHHHHHHHHHhhc
Confidence            99999999999999999998764

>PLN02263 serine decarboxylase

Probab=98.47  E-value=3.4e-05  Score=72.75  Aligned_cols=226  Identities=18%  Similarity=0.116  Sum_probs=132.6

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ||||-.|+..||.+..+ .++..+..=|-...=+..+-+        +  .+..+|.....+    -|        .++|
T Consensus       162 TEaNL~Al~aARe~~~~-~vvy~S~~aH~Sv~KAa~llg--------i--~~~~Vp~d~~g~----mD--------~~aL  218 (470)
T PLN02263        162 TEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYR--------M--ECVKVDTLVSGE----ID--------CADF  218 (470)
T ss_pred             HHHHHHHHHHHHhhcCC-cEEEEcCCccHHHHHHHHhcC--------C--cceEeccCCCCc----Cc--------HHHH
Confidence            68999999999997433 344443333422211111111        1  122234322111    11        6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCC-----EEEEecccccCcc----ccCccccccccCC
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGG-----VVIADEIQCGMGR----SGSHFWAFQTQGA  151 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~-----llI~DEv~tG~gr----~G~~~~a~~~~g~  151 (284)
                      ++.|++.......|+.---....|.+-|    +++|.++|++||+     +|.+|=++.|+--    .-. .|.   +-.
T Consensus       219 ~~aI~~d~~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~-~~d---f~~  290 (470)
T PLN02263        219 KAKLLANKDKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAP-KVT---FKK  290 (470)
T ss_pred             HHHHHhCCCCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccc-ccC---CCc
Confidence            8888754433445544433335677777    9999999999997     9999999887511    100 111   112


Q ss_pred             CCcEEEec--ccccCCcceeEEEecHHHHHhchh---------------------------------------hhhHHHH
Q psy11784        152 VPDIITVG--KPMGNGMPIGAVITSRKIAESLNC---------------------------------------LDDNRPS  190 (284)
Q Consensus       152 ~pDiv~~s--K~l~~G~p~gav~~~~~i~~~~~~---------------------------------------l~~~~~~  190 (284)
                      ..|-+++.  |.++..+|.|.++.+++..+.+..                                       +++..++
T Consensus       291 ~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~  370 (470)
T PLN02263        291 PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRN  370 (470)
T ss_pred             CccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            36666664  888888999999999776544422                                       3355567


Q ss_pred             HHHHHHHHHhccCceeEE-------EEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        191 GKYLVRPLGINLHIFWCL-------ILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       191 ~~~l~~~L~~~~G~~~~i-------~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .+++.+.|++. |+....       -+. ..      ......+|..+.+.   ++.+++...-.++.+.+|++++-|.+
T Consensus       371 A~~l~~~l~~~-g~~~~~~p~s~~V~f~-~p------~~~~~~~gW~L~~~---~~~~Hivvmphv~~~~id~fi~DL~~  439 (470)
T PLN02263        371 AHYLKDRLREA-GISAMLNELSSTVVFE-RP------KDEEFVRRWQLACQ---GNIAHVVVMPSVTIEKLDYFLKELVE  439 (470)
T ss_pred             HHHHHHHHHhC-CCeEEeCCCceEEEEe-cC------chHHhhcceEEccC---CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            78888888874 432211       111 11      11123567766642   24455544444688999999999988


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      ..+..
T Consensus       440 ~~~~~  444 (470)
T PLN02263        440 KRSTW  444 (470)
T ss_pred             HHhhh
Confidence            87643

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.45  E-value=1.8e-05  Score=73.50  Aligned_cols=191  Identities=12%  Similarity=0.089  Sum_probs=110.6

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc----cC------ccccCcccc
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC----GM------GRSGSHFWA  145 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t----G~------gr~G~~~~a  145 (284)
                      ++.|++.|+.++ +++..+.++-+.+..|..+.|.+.+++++++|++||+.+++|=+--    -|      +..|....-
T Consensus       169 l~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~e  248 (467)
T TIGR02617       169 LEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQ  248 (467)
T ss_pred             HHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHH
Confidence            788999998554 4588888887777778888899999999999999999999994320    00      111110000


Q ss_pred             c-cccCCCCcE--EEecccccCCcceeEEEe-cHH----HHHhchh----------------------------------
Q psy11784        146 F-QTQGAVPDI--ITVGKPMGNGMPIGAVIT-SRK----IAESLNC----------------------------------  183 (284)
Q Consensus       146 ~-~~~g~~pDi--v~~sK~l~~G~p~gav~~-~~~----i~~~~~~----------------------------------  183 (284)
                      . ..+--..|.  +|++|+++.  |+|.+++ +++    +.+..+.                                  
T Consensus       249 I~rE~~~~aDsvt~slsKglgA--pvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~y  326 (467)
T TIGR02617       249 ITRETYKYADMLAMSAKKDAMV--PMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDW  326 (467)
T ss_pred             HHHHhhccCCEEEEEcCCCCCC--cccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHH
Confidence            0 000012454  467898864  6665554 443    2333222                                  


Q ss_pred             hhhHHHHHHHHHHHHHhccCce--------eEEEEe------cc-cHHHHHHHHHHH-HCCcEEeecCC-----------
Q psy11784        184 LDDNRPSGKYLVRPLGINLHIF--------WCLILL------SI-TYYLYRYTRRMK-EAKIIVANEGE-----------  236 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~~G~~--------~~i~~~------~~-~~~~~~~~~~l~-~~Gv~~~~~~~-----------  236 (284)
                      ++.=-..-+||.+.|.+. |.-        +-++..      |. .--+..++-+|. +.||-..-.|.           
T Consensus       327 l~~ri~qv~yl~~~L~~~-Gvpi~~~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~  405 (467)
T TIGR02617       327 LAYRINQVQYLVNGLEEI-GVVCQQAGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGK  405 (467)
T ss_pred             HHHHHHHHHHHHHHHHhC-CCcEEecCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCc
Confidence            111112345667777663 331        122211      11 122556666665 55665321110           


Q ss_pred             --C--CCEEEEEcCC-CCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        237 --Y--GNVLLFLPAM-CLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       237 --~--~~~lr~~p~l-~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                        .  -..+|++.|- +.|.+++|..++++..+.++-..
T Consensus       406 ~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~~  444 (467)
T TIGR02617       406 QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAPN  444 (467)
T ss_pred             cCCCccceeeeccccccccHhHHHHHHHHHHHHHhhhhh
Confidence              0  1467877654 45999999999999998876543

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=98.45  E-value=3.8e-05  Score=70.93  Aligned_cols=86  Identities=14%  Similarity=0.147  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcc-c-cCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGR-S-GSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr-~-G~~~~a~~~~g~~pD  154 (284)
                      .+++++.+.   +++.+|++  + ...|....    +++|.++|++||+++|.|++|+ +|. . |+      ..|-.-|
T Consensus       109 ~~~le~~i~---~~tk~i~~--~-~~~G~~~~----~~~i~~la~~~~i~vIeD~a~a-~g~~~~~~------~~g~~~~  171 (375)
T PRK11706        109 ETLIEAAIT---PKTRAIVP--V-HYAGVACE----MDTIMALAKKHNLFVVEDAAQG-VMSTYKGR------ALGTIGH  171 (375)
T ss_pred             HHHHHHhcC---CCCeEEEE--e-CCCCCccC----HHHHHHHHHHcCCEEEEECccc-cccccCCe------eeecCcC
Confidence            567777665   34566653  2 23465444    8999999999999999999997 332 1 21      1122247


Q ss_pred             EEEec----ccccCCcceeEEEecHHHHH
Q psy11784        155 IITVG----KPMGNGMPIGAVITSRKIAE  179 (284)
Q Consensus       155 iv~~s----K~l~~G~p~gav~~~~~i~~  179 (284)
                      +.+||    |.++.|...+++..++++.+
T Consensus       172 ~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~  200 (375)
T PRK11706        172 IGCFSFHETKNYTAGEGGALLINDPALIE  200 (375)
T ss_pred             EEEEeCCCCccccccCCeEEEECCHHHHH
Confidence            88888    99976544445555566654

>KOG1549|consensus

Probab=98.44  E-value=9.2e-06  Score=74.55  Aligned_cols=85  Identities=21%  Similarity=0.232  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++.+++.|+   +++.+|.+.-|.++-|...|    +++|..+|+++|+.+++|-+|.    .|+  .-.+-..+.+|.+
T Consensus       171 ~~~~~~~i~---~~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa----vG~--i~vDV~eln~D~~  237 (428)
T KOG1549|consen  171 ISKLREAIR---SKTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA----VGK--IPVDVQELNADFL  237 (428)
T ss_pred             HHHHHHhcC---CCceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh----cCC--ccccHHHcCchhe
Confidence            677777776   67999999999999999999    9999999999999999999996    344  2445556778888


Q ss_pred             Eec--ccccCCcceeEEEecH
Q psy11784        157 TVG--KPMGNGMPIGAVITSR  175 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~  175 (284)
                      +++  |++|.- ++|++.+++
T Consensus       238 s~s~HK~ygp~-~iGaLYvr~  257 (428)
T KOG1549|consen  238 SISAHKIYGPP-GIGALYVRR  257 (428)
T ss_pred             eeecccccCCC-cceEEEEcc
Confidence            765  888741 289999886

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=98.44  E-value=1.9e-05  Score=73.70  Aligned_cols=189  Identities=10%  Similarity=0.072  Sum_probs=117.7

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc----cccCC
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF----QTQGA  151 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~----~~~g~  151 (284)
                      .+.|++.|.... ..++.|.+|-.....|..+.|.+.+++++++|++||+.||.|=++. || .+  +|--    .+.+.
T Consensus       156 ~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~g-NA--~~I~~re~g~~~~  231 (450)
T TIGR02618       156 LKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VE-NA--YFIKEREQGYEDK  231 (450)
T ss_pred             HHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hh-Ch--hhhhcccccccCC
Confidence            688888887432 3467777776666555567889999999999999999999998775 31 11  1110    01122


Q ss_pred             -----------CCcEEEecccccC-CcceeEEEe--cHHHHHhchh----------------------------------
Q psy11784        152 -----------VPDIITVGKPMGN-GMPIGAVIT--SRKIAESLNC----------------------------------  183 (284)
Q Consensus       152 -----------~pDiv~~sK~l~~-G~p~gav~~--~~~i~~~~~~----------------------------------  183 (284)
                                 ..|. |++|+... +.|+|.+++  .+++++..+.                                  
T Consensus       232 ~i~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y  310 (450)
T TIGR02618       232 SIAEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEY  310 (450)
T ss_pred             CHHHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHH
Confidence                       2355 66666643 357777776  6677665443                                  


Q ss_pred             hhhHHHHHHHHHHHHHhc--------cCceeEEEEe------cc-cHHHHHHHHHHH-HCCcEEeecCC-----------
Q psy11784        184 LDDNRPSGKYLVRPLGIN--------LHIFWCLILL------SI-TYYLYRYTRRMK-EAKIIVANEGE-----------  236 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~--------~G~~~~i~~~------~~-~~~~~~~~~~l~-~~Gv~~~~~~~-----------  236 (284)
                      +++-....++|.+.|++.        .|..+.++..      |. .--+..++.+|. +.||-..-.|.           
T Consensus       311 ~~~r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~  390 (450)
T TIGR02618       311 IEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGE  390 (450)
T ss_pred             HHHHHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCc
Confidence            123333467788888775        3334444432      11 123556666666 55665432110           


Q ss_pred             --C--CCEEEEEcCC-CCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        237 --Y--GNVLLFLPAM-CLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       237 --~--~~~lr~~p~l-~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                        .  -..+|++.|- +.|.+++|...+++..+.++-..
T Consensus       391 ~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~  429 (450)
T TIGR02618       391 HHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDD  429 (450)
T ss_pred             ccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhh
Confidence              0  1467877654 45999999999999999877544

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=98.40  E-value=1.1e-05  Score=74.10  Aligned_cols=162  Identities=11%  Similarity=0.029  Sum_probs=104.4

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCCc
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNGM  166 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G~  166 (284)
                      +++..|.+--.-...|.+.|    +++|   ++++|+++|+|=+|+ +|-  . ..-.+    .-|++++|  |.+++--
T Consensus       127 ~~~~lV~~~h~et~tG~~~p----i~~I---~~~~g~~~iVDavqs-~g~--~-~idv~----~~D~~~~s~~K~lg~~~  191 (361)
T TIGR01366       127 PGVDVIAWAHNETSTGVAVP----VRRP---EGSDDALVVIDATSG-AGG--L-PVDIA----ETDVYYFAPQKNFASDG  191 (361)
T ss_pred             CCCCEEEEcccCCccceecc----cccc---cccCCCeEEEEcCcc-ccC--C-CCCHH----HCCEEEEEchhhcCCCC
Confidence            34666666666666777776    4444   689999999999997 321  1 12222    15888776  9887410


Q ss_pred             ceeEEEecHHHHHhchh------------------------------------------------------hhhHHHHHH
Q psy11784        167 PIGAVITSRKIAESLNC------------------------------------------------------LDDNRPSGK  192 (284)
Q Consensus       167 p~gav~~~~~i~~~~~~------------------------------------------------------l~~~~~~~~  192 (284)
                      -++.++.+++..+.+..                                                      .++.+++.+
T Consensus       192 Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~  271 (361)
T TIGR01366       192 GLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSS  271 (361)
T ss_pred             ceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            24555667766533220                                                      124445556


Q ss_pred             HHHHHHHhccCc---e-----------eEEEEecccHHHHHHHHHHHHCCcEEeecC--CCCCEEEEEcCCCCCHHHHHH
Q psy11784        193 YLVRPLGINLHI---F-----------WCLILLSITYYLYRYTRRMKEAKIIVANEG--EYGNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       193 ~l~~~L~~~~G~---~-----------~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~lr~~p~l~~t~~~id~  256 (284)
                      ++++.|++. +.   +           ..+.+ ++......+.+.|.++||.+.+..  ..++.+|+......|++||+.
T Consensus       272 ~l~~~l~~~-~~~~~~~~~~~~~s~~v~~v~~-~~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~  349 (361)
T TIGR01366       272 RLYSWAQER-PYATPFVTDPGKRSQVVGTIDF-VDDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEA  349 (361)
T ss_pred             HHHHHHHhC-CCcccCCCChhhcccceEEEEC-CCccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHH
Confidence            666666664 21   1           11222 333456778889999999987531  124679999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy11784        257 IVSTLNRIFTS  267 (284)
Q Consensus       257 ~~~~l~~~l~~  267 (284)
                      +++.|++++++
T Consensus       350 l~~al~~~~~~  360 (361)
T TIGR01366       350 LTECVDWVVER  360 (361)
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=98.34  E-value=8.1e-05  Score=67.47  Aligned_cols=187  Identities=12%  Similarity=0.052  Sum_probs=112.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHH-HHHhCCEEEEecccccCccccCc--c-----c-ccc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDY-IHEIGGVVIADEIQCGMGRSGSH--F-----W-AFQ  147 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l-~~~~g~llI~DEv~tG~gr~G~~--~-----~-a~~  147 (284)
                      ++.+|+++. ..+.|.++++=|.+++-..+.++.+..++|..+ +...++.++-|.+|+----++..  .     + .+.
T Consensus       160 mD~Ve~LV~-~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~  238 (425)
T PF12897_consen  160 MDMVEELVA-EDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACA  238 (425)
T ss_dssp             HHHHHHHTH-TSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHH
T ss_pred             HHHHHHHHh-cCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHH
Confidence            788888876 234599999999999866678899999999999 44689999999998621001110  0     0 001


Q ss_pred             ccCCCCcEE----EecccccCCcceeEEEecHHHHHhchh--------------hh------------------------
Q psy11784        148 TQGAVPDII----TVGKPMGNGMPIGAVITSRKIAESLNC--------------LD------------------------  185 (284)
Q Consensus       148 ~~g~~pDiv----~~sK~l~~G~p~gav~~~~~i~~~~~~--------------l~------------------------  185 (284)
                      .. -.||.+    +.||-.-.|-.++++.++++-++.+..              +.                        
T Consensus       239 ~A-Gnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~  317 (425)
T PF12897_consen  239 KA-GNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILR  317 (425)
T ss_dssp             HT-T-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHH
T ss_pred             Hc-CCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHh
Confidence            11 246643    568887677789999999887776654              10                        


Q ss_pred             -hHHHHHHHHHHHHH-hc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--------CCCEEEEEcC
Q psy11784        186 -DNRPSGKYLVRPLG-IN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--------YGNVLLFLPA  246 (284)
Q Consensus       186 -~~~~~~~~l~~~L~-~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--------~~~~lr~~p~  246 (284)
                       +.+.+-+.|.++|. ..         -|.|++++..  ...+.++++.+.+.||.+.+.|.        ....||+.|+
T Consensus       318 PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~--~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS  395 (425)
T PF12897_consen  318 PKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVL--DGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPS  395 (425)
T ss_dssp             HHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEES--TT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--S
T ss_pred             hhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecC--CChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCC
Confidence             22223344455555 22         5667777774  35788999999999999988542        4468999988


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q psy11784        247 MCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       247 l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +- +-+|++.+++.|.-+++-.
T Consensus       396 ~P-~leel~~Am~~~~~cv~la  416 (425)
T PF12897_consen  396 YP-SLEELETAMDVFATCVKLA  416 (425)
T ss_dssp             SS--HHHHHHHHHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHHHHHHH
Confidence            76 8999999999998777644

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=98.29  E-value=8.8e-05  Score=69.53  Aligned_cols=190  Identities=12%  Similarity=0.095  Sum_probs=112.6

Q ss_pred             HHHHHHHHHhc-CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCc-------cccCccccc--
Q psy11784         77 AQAARNIMEAH-RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG-------RSGSHFWAF--  146 (284)
Q Consensus        77 ~~~l~~~i~~~-~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~g-------r~G~~~~a~--  146 (284)
                      .+.|++.|... ...++.|.++-.....|..+.|.+.+++++++|++||+.||.|=++. +|       |... +...  
T Consensus       163 ~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~-y~~~~i  240 (460)
T PRK13237        163 LDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEG-YQDKSI  240 (460)
T ss_pred             HHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccc-cCCCcH
Confidence            67888888743 33466666665555555567788899999999999999999998876 32       1010 0000  


Q ss_pred             ----cccCCCCcEEEec--ccccCCcce-eEEEe-cHHHHHhchh----------------------------------h
Q psy11784        147 ----QTQGAVPDIITVG--KPMGNGMPI-GAVIT-SRKIAESLNC----------------------------------L  184 (284)
Q Consensus       147 ----~~~g~~pDiv~~s--K~l~~G~p~-gav~~-~~~i~~~~~~----------------------------------l  184 (284)
                          ....-.-|.+|+|  |.++.  +. |+++. .+++++.++.                                  +
T Consensus       241 ~ei~~e~~s~aD~~t~S~~K~~~~--~~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~  318 (460)
T PRK13237        241 KEIVHEMFSYADGCTMSGKKDCLV--NIGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYI  318 (460)
T ss_pred             hHHhhhccCcCcEEEEeCCCCCCC--CCceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHH
Confidence                0011236888776  55543  33 55665 4566665543                                  1


Q ss_pred             hhHHHHHHHHHHHHHhc--------cCceeEEEEe------cc-cHHHHHHHHHHH-HCCcEEeecC-------C-----
Q psy11784        185 DDNRPSGKYLVRPLGIN--------LHIFWCLILL------SI-TYYLYRYTRRMK-EAKIIVANEG-------E-----  236 (284)
Q Consensus       185 ~~~~~~~~~l~~~L~~~--------~G~~~~i~~~------~~-~~~~~~~~~~l~-~~Gv~~~~~~-------~-----  236 (284)
                      +.--...++|.+.|.+.        .|.-+.++..      |. .--+..++.+|. +.||-..-.|       +     
T Consensus       319 ~~ri~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~  398 (460)
T PRK13237        319 EHRVGQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGEN  398 (460)
T ss_pred             HHHHHHHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCcc
Confidence            12223456677777664        2333333322      11 123556666665 4566443111       0     


Q ss_pred             -C--CCEEEEEcCC-CCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        237 -Y--GNVLLFLPAM-CLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       237 -~--~~~lr~~p~l-~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                       .  -..+|++.|- +.|.+++|...+++..+.++-..
T Consensus       399 ~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~  436 (460)
T PRK13237        399 HYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRED  436 (460)
T ss_pred             CCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhh
Confidence             0  1467877654 45999999999999999877544

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.29  E-value=2.8e-05  Score=72.97  Aligned_cols=74  Identities=16%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.|.   +++.+|++|...+..+.++.    +++|.++|++||+++|+|+++.    +   ...++.+..-.||+
T Consensus       137 ~~~l~~~I~---~~Tk~I~~e~pgnP~~~v~D----i~~I~~iA~~~gi~livD~T~~----t---P~~~~pl~~GADIv  202 (432)
T PRK06702        137 ADEIVALAN---DKTKLVYAESLGNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA----T---PYLCQAFEHGANII  202 (432)
T ss_pred             HHHHHHhCC---cCCeEEEEEcCCCccccccC----HHHHHHHHHHcCCEEEEECCCC----c---hhhCChhhcCCCEE
Confidence            466777775   45788999975444555555    9999999999999999999874    1   23344444457776


Q ss_pred             --EecccccC
Q psy11784        157 --TVGKPMGN  164 (284)
Q Consensus       157 --~~sK~l~~  164 (284)
                        .++|.++|
T Consensus       203 v~S~TKy~~G  212 (432)
T PRK06702        203 VHSTTKYIDG  212 (432)
T ss_pred             EEccccccCC
Confidence              56798886

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=98.27  E-value=4.4e-06  Score=74.53  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=50.2

Q ss_pred             HHHHHHHHHhcCCCee-EEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc-CccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIA-TLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG-MGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~va-avi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG-~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+++++.+++.+ ++. .++..|.  ..|...+    +++|.++|++||+++|+||+|.. +...+.  +.........|
T Consensus       142 ~~~l~~~l~~~~-~~k~v~l~~p~--~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~--~~~~~~~~~~d  212 (294)
T cd00615         142 PETFKKALIEHP-DAKAAVITNPT--YYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPI--LPSSAAMAGAD  212 (294)
T ss_pred             HHHHHHHHHhCC-CceEEEEECCC--CCCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcc--cCcchhhcCCc
Confidence            577888876433 344 4455563  3677666    99999999999999999999974 211221  11111123467


Q ss_pred             EEE--eccccc
Q psy11784        155 IIT--VGKPMG  163 (284)
Q Consensus       155 iv~--~sK~l~  163 (284)
                      +++  +.|.++
T Consensus       213 iv~~S~hK~l~  223 (294)
T cd00615         213 IVVQSTHKTLP  223 (294)
T ss_pred             EEEEchhcccc
Confidence            764  569885

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=98.21  E-value=0.00017  Score=66.56  Aligned_cols=164  Identities=15%  Similarity=0.129  Sum_probs=104.8

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE--ecccccCC-
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT--VGKPMGNG-  165 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~--~sK~l~~G-  165 (284)
                      +++.+|.+|+.-+.--.++.    +++|.++|+++|+++|+|.....    +   ..++....-.||++  ..|-++|. 
T Consensus       148 ~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat----P---~~q~PL~~GaDIVvhSaTKyl~GHs  216 (396)
T COG0626         148 PNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT----P---VLQRPLELGADIVVHSATKYLGGHS  216 (396)
T ss_pred             cCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCccc----c---cccChhhcCCCEEEEeccccccCCc
Confidence            57999999987665555555    99999999999999999997752    1   22333444478885  55999984 


Q ss_pred             -cceeEEEec-HHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc--------------
Q psy11784        166 -MPIGAVITS-RKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN--------------  201 (284)
Q Consensus       166 -~p~gav~~~-~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~--------------  201 (284)
                       .-.|+++++ +++.+.+..                            +++..+++..+.+.|++.              
T Consensus       217 Dvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~sh  296 (396)
T COG0626         217 DVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSH  296 (396)
T ss_pred             ceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCC
Confidence             455666654 444444311                            345556666666666654              


Q ss_pred             ------------cCceeEEEEecccHHHHHHHHHHHHCCc----------EEeec---------------CCCCCEEEEE
Q psy11784        202 ------------LHIFWCLILLSITYYLYRYTRRMKEAKI----------IVANE---------------GEYGNVLLFL  244 (284)
Q Consensus       202 ------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv----------~~~~~---------------~~~~~~lr~~  244 (284)
                                  .|.|+++++... +.+.+|.+.|.--.+          +..|.               +..++.+|++
T Consensus       297 p~he~~~rq~~g~gg~~Sf~l~~~-~~~~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlS  375 (396)
T COG0626         297 PGHELAKRQMTGYGGLFSFELKNE-EAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLS  375 (396)
T ss_pred             CcHHHHHHhcCCCceEEEEEeCCh-HHHHHHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEE
Confidence                        567888888633 556667666542221          11110               1134678885


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        245 PAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       245 p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      .-+    |+++.+++-|+++++.+
T Consensus       376 VGl----Ed~eDLi~Dl~~Al~~~  395 (396)
T COG0626         376 VGL----EDVEDLIADLEQALAKA  395 (396)
T ss_pred             ecC----CCHHHHHHHHHHHHHhh
Confidence            433    66777777777777653

>KOG2862|consensus

Probab=98.20  E-value=0.00017  Score=63.44  Aligned_cols=180  Identities=13%  Similarity=0.133  Sum_probs=118.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++.+++.+.++.  ..+|.+--.-++.|+..   +.++..-++|++|+++|++|-|-+ +|  |. -|.++.+|+.--..
T Consensus       131 le~i~~~lsqh~--p~~vfv~hgdsSTgV~q---~~~~~~g~lc~k~~~lllVD~VaS-lg--gt-~F~mDewgVDvayt  201 (385)
T KOG2862|consen  131 LEEITEKLSQHK--PKAVFVTHGDSSTGVLQ---DLLAISGELCHKHEALLLVDTVAS-LG--GT-EFEMDEWGVDVAYT  201 (385)
T ss_pred             HHHHHHHHHhcC--CceEEEEecCccccccc---hHHHHHHHHhhcCCeEEEEechhh-cC--Cc-cceehhhcccEEEe
Confidence            677888887544  34455544444556544   346778899999999999999987 33  33 46777777644333


Q ss_pred             EecccccCCcceeEEEecHHHHHhchh-----------------------------------------------------
Q psy11784        157 TVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------------------------------  183 (284)
Q Consensus       157 ~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------------------------------  183 (284)
                      ---|+|++--.++-+..++..++.++.                                                     
T Consensus       202 gSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~  281 (385)
T KOG2862|consen  202 GSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLE  281 (385)
T ss_pred             cchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            445999862224447788888887765                                                     


Q ss_pred             --hhhHHHHHHHHHHHHHhccCcee-------------EEEEecccHHHHHHHHHHHHCCcEEeecC---CCCCEEEEEc
Q psy11784        184 --LDDNRPSGKYLVRPLGINLHIFW-------------CLILLSITYYLYRYTRRMKEAKIIVANEG---EYGNVLLFLP  245 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~~G~~~-------------~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~~lr~~p  245 (284)
                        .++-++++++++..|+++ |+-.             ++.. |...+..+++..+++++.+...++   ..+.++||-.
T Consensus       282 ~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~v-p~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl  359 (385)
T KOG2862|consen  282 NSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKV-PYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGL  359 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CccceecChhhccCcceeeec-CCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEE
Confidence              235667888888888884 4422             1111 445567889999998855444332   2356888753


Q ss_pred             -CCCCCHHHHHHHHHHHHHHHHH
Q psy11784        246 -AMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       246 -~l~~t~~~id~~~~~l~~~l~~  267 (284)
                       .-+-+-+-|+..++.|..++.+
T Consensus       360 ~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  360 LGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             eeccCCcHHHHHHHHHHHHHHhh
Confidence             2234677888888888877754

>PLN02368 alanine transaminase

Probab=98.19  E-value=3.3e-05  Score=72.15  Aligned_cols=104  Identities=15%  Similarity=0.092  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhc---CCCee-EEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC-cccccccc--
Q psy11784         77 AQAARNIMEAH---RDNIA-TLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-HFWAFQTQ--  149 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~va-avi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~~a~~~~--  149 (284)
                      .+.+++.+...   ..++. .++..| ++-.|. +.+++.+++|.++|++||+++|.||+|..+-..|. .+.+....  
T Consensus       194 ~~~le~~i~~~~~~~~~~k~l~l~nP-~NPTG~-v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~  271 (407)
T PLN02368        194 VNNLRQSVAQARSKGITVRAMVIINP-GNPTGQ-CLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLM  271 (407)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEEECC-CCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHh
Confidence            57777777521   12455 455667 555675 56899999999999999999999999987643331 11111110  


Q ss_pred             CC------CCcEE---Eeccccc--CCcceeEEEe---cHHHHHhch
Q psy11784        150 GA------VPDII---TVGKPMG--NGMPIGAVIT---SRKIAESLN  182 (284)
Q Consensus       150 g~------~pDiv---~~sK~l~--~G~p~gav~~---~~~i~~~~~  182 (284)
                      ++      .+.++   +|||++.  .|+++|++++   ++++++.+.
T Consensus       272 ~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~  318 (407)
T PLN02368        272 DMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIY  318 (407)
T ss_pred             hhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHH
Confidence            11      12333   5799984  6999999994   777776654

>KOG0053|consensus

Probab=98.18  E-value=0.00013  Score=66.98  Aligned_cols=93  Identities=16%  Similarity=0.158  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++.+++.++   +++-+|.+|..-+.-..++.    +++|+++|+++|+++|+|+...+.       .-++....-.|||
T Consensus       152 ~~~~~~~i~---~~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p-------~~~~pL~lGADIV  217 (409)
T KOG0053|consen  152 LKKILKAIK---ENTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP-------YNQDPLPLGADIV  217 (409)
T ss_pred             HHHHHHhhc---cCceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc-------cccChhhcCCCEE
Confidence            344555444   47999999987666566666    999999999999999999977543       2233334448999


Q ss_pred             Ee--cccccCC--cceeEEEec-HHHHHhchh
Q psy11784        157 TV--GKPMGNG--MPIGAVITS-RKIAESLNC  183 (284)
Q Consensus       157 ~~--sK~l~~G--~p~gav~~~-~~i~~~~~~  183 (284)
                      +-  .|-++|.  +-.|.++.+ ++....+..
T Consensus       218 ~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~  249 (409)
T KOG0053|consen  218 VHSATKYIGGHSDVIGGSVVLNSEELASRLKF  249 (409)
T ss_pred             EEeeeeeecCCcceeeeEEecCcHHHHHHHHH
Confidence            65  5999984  455666664 666655543

>KOG0258|consensus

Probab=98.18  E-value=6.8e-05  Score=67.72  Aligned_cols=186  Identities=17%  Similarity=0.200  Sum_probs=116.1

Q ss_pred             HHHHHHHHHhcCCC---eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc-CccccCccccccc----
Q psy11784         77 AQAARNIMEAHRDN---IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG-MGRSGSHFWAFQT----  148 (284)
Q Consensus        77 ~~~l~~~i~~~~~~---vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG-~gr~G~~~~a~~~----  148 (284)
                      .++|++.++....+   -+.||+.|..-. | .+.+++-+++|...|.++|++|+.||||.- ..-.|+.|+++..    
T Consensus       200 ~~el~~~~~eA~k~i~~r~lvvINPGNPT-G-qvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~e  277 (475)
T KOG0258|consen  200 VAELERSVDEARKGINPRALVVINPGNPT-G-QVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHE  277 (475)
T ss_pred             HHHHHHHHHHHhccCCceEEEEECCCCcc-c-hhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHH
Confidence            67788877743333   578889995443 3 367899999999999999999999999863 2234433555432    


Q ss_pred             cC-CCCcE------EEecccccC--CcceeEEEe---cHHHHHhchh---------------------------------
Q psy11784        149 QG-AVPDI------ITVGKPMGN--GMPIGAVIT---SRKIAESLNC---------------------------------  183 (284)
Q Consensus       149 ~g-~~pDi------v~~sK~l~~--G~p~gav~~---~~~i~~~~~~---------------------------------  183 (284)
                      .| -.||-      -..||+.-|  |.+-|++-.   .+++.+.+.+                                 
T Consensus       278 mg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~  357 (475)
T KOG0258|consen  278 MGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLF  357 (475)
T ss_pred             hcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhh
Confidence            22 23432      245888875  566666553   3454444333                                 


Q ss_pred             -------hhhHHHHHHHHHHHHHhc--------cCceeEEEEe--ccc--HH--------HHHHHHHHHH-CCcEEeecC
Q psy11784        184 -------LDDNRPSGKYLVRPLGIN--------LHIFWCLILL--SIT--YY--------LYRYTRRMKE-AKIIVANEG  235 (284)
Q Consensus       184 -------l~~~~~~~~~l~~~L~~~--------~G~~~~i~~~--~~~--~~--------~~~~~~~l~~-~Gv~~~~~~  235 (284)
                             ++.++.+.+.+.+.++++        .|.|+.+.-.  |..  +.        ..-.|.+|++ -||-+.|++
T Consensus       358 ~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGS  437 (475)
T KOG0258|consen  358 SSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGS  437 (475)
T ss_pred             hhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCC
Confidence                   446777888888888887        6777766533  211  01        1234566665 599999986


Q ss_pred             CCC-----CEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        236 EYG-----NVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       236 ~~~-----~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      -++     -++|.+   ...+. + +.++++.++=++..
T Consensus       438 GFGQ~~GtyH~R~T---iLp~~-~-~~i~~~~~fH~~f~  471 (475)
T KOG0258|consen  438 GFGQKEGTYHFRTT---ILPPG-L-EIIEKFKKFHAEFM  471 (475)
T ss_pred             CCCCCCceeEEEEe---ecCch-h-HHHHHHHHHHHHHH
Confidence            544     256643   11222 4 67777776655543

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=98.11  E-value=0.00015  Score=66.30  Aligned_cols=140  Identities=11%  Similarity=0.084  Sum_probs=90.3

Q ss_pred             HHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCCcceeEEEecHHHHHhchh------------
Q psy11784        118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNGMPIGAVITSRKIAESLNC------------  183 (284)
Q Consensus       118 ~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G~p~gav~~~~~i~~~~~~------------  183 (284)
                      ++++.+++++++|=|++ +|-  . ..-.+.+    |++++|  |.+| -..+|.+..+++..+.+..            
T Consensus       149 ~l~~~~~~l~iVDavss-~g~--~-~id~~~~----d~~~~ssqK~lg-P~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~  219 (349)
T TIGR01364       149 ELPDVKNAPLVADMSSN-ILS--R-PIDVSKF----GLIYAGAQKNIG-PAGLTVVIVRKDLLGRASRITPSMLNYKIHA  219 (349)
T ss_pred             eecccCCCeEEEEcccc-ccC--c-cCCHHHc----cEEEEecccccC-CCceEEEEECHHHHhhcccCCCCcchHHHHH
Confidence            67888999999999987 321  1 1222222    466665  9884 2238899999988764421            


Q ss_pred             ---------------------------------hhhHHHHHHHHHHHHHhccCceeE-----------EEEe-cccHHHH
Q psy11784        184 ---------------------------------LDDNRPSGKYLVRPLGINLHIFWC-----------LILL-SITYYLY  218 (284)
Q Consensus       184 ---------------------------------l~~~~~~~~~l~~~L~~~~G~~~~-----------i~~~-~~~~~~~  218 (284)
                                                       .++.+++.+++++.|+++.|+..-           +.+. +......
T Consensus       220 ~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~  299 (349)
T TIGR01364       220 ENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEK  299 (349)
T ss_pred             hcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhH
Confidence                                             114456667777777775233111           1111 2112235


Q ss_pred             HHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        219 RYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       219 ~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ++.+.+.++|+.+.++....+.+|+++...+|++|||.+++.|+++++
T Consensus       300 ~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~  347 (349)
T TIGR01364       300 RFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQK  347 (349)
T ss_pred             HHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence            666788899995554422246899999999999999999999998654

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>KOG3846|consensus

Probab=98.10  E-value=0.00015  Score=63.66  Aligned_cols=178  Identities=18%  Similarity=0.166  Sum_probs=115.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++-+.|++.++++|.|++..||--.|....    +.+|-..-...|+++-+|=+|+ +|..-   .....+|+  |+.
T Consensus       201 teDILd~IEkngDeiA~v~fSGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vgNVp---L~LHdWgV--DFA  270 (465)
T KOG3846|consen  201 TEDILDTIEKNGDEIALVCFSGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VGNVP---LQLHDWGV--DFA  270 (465)
T ss_pred             HHHHHHHHHhcCCeEEEEEeecceeecccccc----hhhhhhcccCCCcEechhhhhh-hcCCc---eEEeecCC--ceE
Confidence            45666677778888999999999988887665    6677655556699999998886 43321   12223443  444


Q ss_pred             E--ecccccCCc-ceeEEEecHHHHHh-chh-------------------------------------------------
Q psy11784        157 T--VGKPMGNGM-PIGAVITSRKIAES-LNC-------------------------------------------------  183 (284)
Q Consensus       157 ~--~sK~l~~G~-p~gav~~~~~i~~~-~~~-------------------------------------------------  183 (284)
                      |  --|-+..|- .+|.....++.... ...                                                 
T Consensus       271 CWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~  350 (465)
T KOG3846|consen  271 CWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFA  350 (465)
T ss_pred             EEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHH
Confidence            3  336554331 34444443322211 110                                                 


Q ss_pred             ---hhhHHHHHHHHHHHHHhc----------------------------cCceeEEEEecccHHHHHHHHHHHHCCcEEe
Q psy11784        184 ---LDDNRPSGKYLVRPLGIN----------------------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVA  232 (284)
Q Consensus       184 ---l~~~~~~~~~l~~~L~~~----------------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~  232 (284)
                         ++.+++++-+|..-|..+                            .|.-+.+.+.   .....+.++|.++|+++.
T Consensus       351 q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fs---sp~~~vfqeL~krGv~~D  427 (465)
T KOG3846|consen  351 QFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFS---SPTPKVFQELHKRGVIGD  427 (465)
T ss_pred             HhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeC---CCchHHHHHHHHcCeecc
Confidence               345666665555555444                            2333333332   124678999999999997


Q ss_pred             ecCCCCCEEEEEc-CCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        233 NEGEYGNVLLFLP-AMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       233 ~~~~~~~~lr~~p-~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      .  ..+|+||+.| |+..|-.|+-.+++.|.++++.++
T Consensus       428 k--R~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e  463 (465)
T KOG3846|consen  428 K--RRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE  463 (465)
T ss_pred             c--cCCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence            5  3469999999 899999999999999999988764

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=98.08  E-value=0.00017  Score=66.37  Aligned_cols=133  Identities=12%  Similarity=0.043  Sum_probs=87.7

Q ss_pred             hCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCCcceeEEEecHHHHHhchh-----------------
Q psy11784        123 IGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNGMPIGAVITSRKIAESLNC-----------------  183 (284)
Q Consensus       123 ~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G~p~gav~~~~~i~~~~~~-----------------  183 (284)
                      ||+++|+|=|++ +|-  . ..-.+.+    |++++|  |.+| -..+|.+.++++..+.+..                 
T Consensus       165 ~g~l~vVDavss-~g~--~-~idv~~~----d~~~~ssqK~lg-P~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~  235 (360)
T PRK05355        165 GDVPLVADMSSD-ILS--R-PIDVSKF----GLIYAGAQKNIG-PAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSM  235 (360)
T ss_pred             CCCcEEEEcCcc-ccC--c-cCCHHHc----cEEEEecccccc-CCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCc
Confidence            899999999987 321  1 1222222    477665  9884 2238899999988755321                 


Q ss_pred             ---------------h-------------hhHHHHHHHHHHHHHhccCce-------------eEEEEecccHHHHHHHH
Q psy11784        184 ---------------L-------------DDNRPSGKYLVRPLGINLHIF-------------WCLILLSITYYLYRYTR  222 (284)
Q Consensus       184 ---------------l-------------~~~~~~~~~l~~~L~~~~G~~-------------~~i~~~~~~~~~~~~~~  222 (284)
                                     +             ++.+++.+++++.|+++ |++             +.+.+ +......++..
T Consensus       236 ~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~v~sf~~-~~~~~~~~~~~  313 (360)
T PRK05355        236 YNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSS-DFYRNPVAPEDRSRMNVPFTL-ADEELDKKFLA  313 (360)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC-CCcccCCChhhcCCcEEEEEc-CChHHHHHHHH
Confidence                           1             14455667777777764 321             22222 22223356767


Q ss_pred             HHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        223 RMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       223 ~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      .+.++|+.+.++....+.+|+++....|.+|||.+++.|++++.
T Consensus       314 ~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~  357 (360)
T PRK05355        314 EAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFER  357 (360)
T ss_pred             HHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            88899999854432247899999999999999999999998764

>PLN02271 serine hydroxymethyltransferase

Probab=98.07  E-value=0.0007  Score=64.93  Aligned_cols=178  Identities=12%  Similarity=0.050  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++....  .+...||+......  ...+    +++++++|+++|++|++|-+|+ .|-.....+. ... ...|++
T Consensus       287 yd~lek~a~~--~rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~-sP~-~~aDvv  355 (586)
T PLN02271        287 YDKLEEKALD--FRPKILICGGSSYP--REWD----YARFRQIADKCGAVLMCDMAHI-SGLVAAKECV-NPF-DYCDIV  355 (586)
T ss_pred             HHHHHHHhhh--cCCeEEEECchhcc--CcCC----HHHHHHHHHHcCCEEEEECccc-ccccccCcCC-CCC-cCCcEE
Confidence            5677775442  34666777432111  2233    8899999999999999999998 2222210110 111 136888


Q ss_pred             Eec--ccccCCcceeEEEecHH--------------------HHHhchh-------------------------------
Q psy11784        157 TVG--KPMGNGMPIGAVITSRK--------------------IAESLNC-------------------------------  183 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~--------------------i~~~~~~-------------------------------  183 (284)
                      +.+  |+|.|--. |.++++++                    +.+.+..                               
T Consensus       356 t~TTHKtLrGPrG-G~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk  434 (586)
T PLN02271        356 TSTTHKSLRGPRG-GIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYK  434 (586)
T ss_pred             EeCCcccCCCCCc-eEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHH
Confidence            764  99976211 55555543                    3222221                               


Q ss_pred             --hhhHHHHHHHHHHHHHhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-------CCCCEEEEEc
Q psy11784        184 --LDDNRPSGKYLVRPLGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-------EYGNVLLFLP  245 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~lr~~p  245 (284)
                        .+++.++.+.|.+.|.+.         ...++.+++.+.........+.|-+-||.+....       ...+.||+-.
T Consensus       435 ~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT  514 (586)
T PLN02271        435 AYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGT  514 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccC
Confidence              236667777788888764         2224445553322235555666667799885321       1234577765


Q ss_pred             CCC----CCHHHHHHHHHHHHHHHH
Q psy11784        246 AMC----LTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       246 ~l~----~t~~~id~~~~~l~~~l~  266 (284)
                      |..    ..++|++++.+.+.++++
T Consensus       515 ~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        515 PAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            544    467899998888888876

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.06  E-value=0.00095  Score=61.33  Aligned_cols=232  Identities=20%  Similarity=0.215  Sum_probs=135.2

Q ss_pred             HHHHHHHcc-----CCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784          7 ALQLARAYT-----GRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus         7 AlklAr~~~-----~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      .|-+.|+|+     +++.++....|=||.--.+.+..+.+.          ..++..+  .+..  |        +++|+
T Consensus       141 Gll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~V----------V~V~~~~--~G~V--D--------lddLk  198 (496)
T COG1003         141 GLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKV----------VVVKCDE--NGNV--D--------LDDLR  198 (496)
T ss_pred             HHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceE----------EEEecCC--CCCc--c--------HHHHH
Confidence            456667774     356677789999998766665544321          1122111  1110  1        67777


Q ss_pred             HHHHhcCCCeeEEEE-cceecCCCcccCChhHHHHHHHHHHHhCCEEEEecc----cccCccccCccccccccCCCCcEE
Q psy11784         82 NIMEAHRDNIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEI----QCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        82 ~~i~~~~~~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv----~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +...   +++||+++ -|  +.-|.   =.+-+++|+++.+++|.+|..|-+    +-|.-|-|..++-..|+++.-   
T Consensus       199 ~k~~---~~~AalMiTnP--sT~Gv---FE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNLHK---  267 (496)
T COG1003         199 AKAE---DNLAALMITNP--STLGV---FEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVHLNLHK---  267 (496)
T ss_pred             HHhc---cceeEEEeccC--ccccc---chhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEEeeccc---
Confidence            7665   66877755 45  22332   234488999999999999999975    334444454211111222110   


Q ss_pred             EecccccCC-cceeEEEecHHHHHhchh-----------------------------------------------hh---
Q psy11784        157 TVGKPMGNG-MPIGAVITSRKIAESLNC-----------------------------------------------LD---  185 (284)
Q Consensus       157 ~~sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------------------------l~---  185 (284)
                      ||+-.-||| -..|-+.+++++...+..                                               ++   
T Consensus       268 TF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~as  347 (496)
T COG1003         268 TFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGADGLKQAS  347 (496)
T ss_pred             ccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHHHHHHHH
Confidence            222222232 223333334333322210                                               22   


Q ss_pred             -hHHHHHHHHHHHHHhc-----cCc-eeEEEEe--------cccHHHHHHHHHHHHCCcEEeecC-C--CCCEEEEEcCC
Q psy11784        186 -DNRPSGKYLVRPLGIN-----LHI-FWCLILL--------SITYYLYRYTRRMKEAKIIVANEG-E--YGNVLLFLPAM  247 (284)
Q Consensus       186 -~~~~~~~~l~~~L~~~-----~G~-~~~i~~~--------~~~~~~~~~~~~l~~~Gv~~~~~~-~--~~~~lr~~p~l  247 (284)
                       ..--+..|+..+|+.-     .|. ...-+++        .....+..++++|++.|+..-... |  -.+.+.+-|.=
T Consensus       348 e~AvLNANYia~rL~~~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTE  427 (496)
T COG1003         348 EVAVLNANYIARRLKGYYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTE  427 (496)
T ss_pred             HHHHHhHHHHHHHhhhcCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcccCccccccceeecCCC
Confidence             2334567888888754     222 2444444        112357889999999999865331 1  23678899999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        248 CLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      +-|++++|.+++++.++.++..+.
T Consensus       428 sEsk~eLDrf~dami~I~~Ea~~~  451 (496)
T COG1003         428 SESKEELDRFIDAMIAIREEADAV  451 (496)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999887654

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.00  E-value=0.00045  Score=63.96  Aligned_cols=170  Identities=18%  Similarity=0.206  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .++++++.+++++++  ||+.+.  .   .+.+-+ +++++++|++.|++|++|=.|. |+=-.|  .+ ...+.. .|+
T Consensus       158 ~d~l~~~a~~~kPkl--Ii~G~S--~---y~~~~d-~~~~reIad~vga~l~~D~sH~~GLIa~g--~~-~~P~~~-ADv  225 (399)
T PF00464_consen  158 YDELEKLAKEHKPKL--IICGAS--S---YPRPID-FKRFREIADEVGAYLMADISHIAGLIAGG--LF-PNPFPY-ADV  225 (399)
T ss_dssp             HHHHHHHHHHH--SE--EEEE-S--S---TSS----HHHHHHHHHHTT-EEEEE-TTTHHHHHTT--SS---GCCT-SSE
T ss_pred             HHHHHHHHhhcCCCE--EEECch--h---ccCccC-HHHHHHHHHhcCcEEEecccccccceehh--ee-cCcccc-ceE
Confidence            678888888666653  444331  1   122223 6999999999999999999987 441112  11 123333 799


Q ss_pred             EEec--ccccCCcceeEEEec--------------HHHHHhchh---------------------------------hhh
Q psy11784        156 ITVG--KPMGNGMPIGAVITS--------------RKIAESLNC---------------------------------LDD  186 (284)
Q Consensus       156 v~~s--K~l~~G~p~gav~~~--------------~~i~~~~~~---------------------------------l~~  186 (284)
                      +|.+  |.|.|- .-|.++++              +++.+.+..                                 .++
T Consensus       226 vt~sThKtl~GP-rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~q  304 (399)
T PF00464_consen  226 VTGSTHKTLRGP-RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQ  304 (399)
T ss_dssp             EEEESSGGG-SS-S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             EEeecccccccc-CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHH
Confidence            9765  999861 23666677              677766654                                 236


Q ss_pred             HHHHHHHHHHHHHhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-C------CCCEEEEEcCCC--
Q psy11784        187 NRPSGKYLVRPLGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-E------YGNVLLFLPAMC--  248 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~------~~~~lr~~p~l~--  248 (284)
                      +.++++.|.+.|++.         ...++.+++.+.........+.|.+.||++.... |      ..+.||+-.+..  
T Consensus       305 Vv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~  384 (399)
T PF00464_consen  305 VVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTR  384 (399)
T ss_dssp             HHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHH
T ss_pred             HHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHh
Confidence            677778888888875         2335566664333356677778889999986421 1      235789875433  


Q ss_pred             --CCHHHHHHHHH
Q psy11784        249 --LTTENVLFIVS  259 (284)
Q Consensus       249 --~t~~~id~~~~  259 (284)
                        ..++|+.++.+
T Consensus       385 rG~~e~dm~~iA~  397 (399)
T PF00464_consen  385 RGMKEEDMKEIAE  397 (399)
T ss_dssp             TT--HHHHHHHHH
T ss_pred             CCCCHHHHHHHHh
Confidence              35666665544

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.99  E-value=0.00054  Score=61.51  Aligned_cols=56  Identities=7%  Similarity=0.100  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhcCCC-eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecc
Q psy11784         77 AQAARNIMEAHRDN-IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEI  132 (284)
Q Consensus        77 ~~~l~~~i~~~~~~-vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv  132 (284)
                      ++.|+++|+..+.+ |.-|+.--..+..|..+.+-+=+++++++|++||+.+++|-.
T Consensus       171 ~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~  227 (471)
T COG3033         171 LEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAA  227 (471)
T ss_pred             HHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehh
Confidence            78999999966655 655544433444566678999999999999999999999965

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.91  E-value=0.00051  Score=70.44  Aligned_cols=158  Identities=13%  Similarity=0.037  Sum_probs=101.5

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--cc---cc-
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KP---MG-  163 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~---l~-  163 (284)
                      +++++++ .+.+..|.+.+    +++|.++|+++|+++++|=.+...+ .++     ..-.+-.|+++.+  |.   +| 
T Consensus       206 ~~~~vlv-q~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~-~l~-----~pge~GaDi~vgs~qkfg~P~g~  274 (954)
T PRK05367        206 DVFGVLL-QYPGTSGEVRD----YTALIAAAHARGALVAVAADLLALT-LLT-----PPGEMGADIAVGSAQRFGVPMGF  274 (954)
T ss_pred             cEEEEEE-ecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhcc-CCC-----ChhhcCCCEEEeeCcccCCCCCC
Confidence            4666543 44677888876    9999999999999999997442111 011     0011234665432  32   12 


Q ss_pred             CCcceeEEEecHHHHHhchh---------------------------------------------------------h--
Q psy11784        164 NGMPIGAVITSRKIAESLNC---------------------------------------------------------L--  184 (284)
Q Consensus       164 ~G~p~gav~~~~~i~~~~~~---------------------------------------------------------l--  184 (284)
                      ||--.|++.+++++.+.+..                                                         +  
T Consensus       275 GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~  354 (954)
T PRK05367        275 GGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKA  354 (954)
T ss_pred             CCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHH
Confidence            22236666777776655432                                                         1  


Q ss_pred             --hhHHHHHHHHHHHHHhccCc-------eeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHH
Q psy11784        185 --DDNRPSGKYLVRPLGINLHI-------FWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       185 --~~~~~~~~~l~~~L~~~~G~-------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id  255 (284)
                        +++..+..++.++|+.. |+       +-.+.+. ......++.++|.++||.+...  ..+.+|++|.-+.|++|||
T Consensus       355 Ia~~~~~la~~l~~~L~~~-G~~~~~~~~f~~~~~~-~~~~~~~i~~~l~~~gi~~~~~--~~~~l~is~~e~~t~~did  430 (954)
T PRK05367        355 IARRVHRLAAILAAGLRAL-GLEVVHDSFFDTLTVE-VGGDAAAVLARALAAGINLRRV--DDDHVGISLDETTTREDLA  430 (954)
T ss_pred             HHHHHHHHHHHHHHHHHhc-CcccCCCCCCCeEEEe-CCCCHHHHHHHHHHCCceeccc--cCCEEEEEecccCCHHHHH
Confidence              24556677777777653 21       1112221 1135778999999999999642  2578999999999999999


Q ss_pred             HHHHHHH
Q psy11784        256 FIVSTLN  262 (284)
Q Consensus       256 ~~~~~l~  262 (284)
                      .+++.|.
T Consensus       431 ~l~~~l~  437 (954)
T PRK05367        431 ALLAVFG  437 (954)
T ss_pred             HHHHHHc
Confidence            9999997

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=97.91  E-value=0.0012  Score=67.62  Aligned_cols=158  Identities=12%  Similarity=0.035  Sum_probs=100.5

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccc---c-
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPM---G-  163 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l---~-  163 (284)
                      .+++++ -.+.+..|.+.+    +++|.++|+++|+++++ -++. ++-.+-  -.  .-.+-.|+++.+  |.+   | 
T Consensus       234 ~v~~vl-vq~P~~~G~v~d----v~~I~~~ah~~GaL~iV-aad~-lal~~l--~~--pge~GADi~vgsgqKwg~P~G~  302 (993)
T PLN02414        234 DVCGVL-VQYPATDGEVLD----YAEFVKNAHANGVKVVM-ATDL-LALTML--KP--PGEWGADIVVGSAQRFGVPMGY  302 (993)
T ss_pred             ceEEEE-EecCCCCeEEcC----HHHHHHHHHHcCCEEEE-EECH-HHhcCC--CC--HhhccCcEEEECCCccccCCCC
Confidence            466665 234456788877    99999999999999999 2222 211110  00  112335776542  332   2 


Q ss_pred             CCcceeEEEecHHHHHhchh---------------------------------------------------------h--
Q psy11784        164 NGMPIGAVITSRKIAESLNC---------------------------------------------------------L--  184 (284)
Q Consensus       164 ~G~p~gav~~~~~i~~~~~~---------------------------------------------------------l--  184 (284)
                      ||--.|++.++++..+.+..                                                         +  
T Consensus       303 GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~  382 (993)
T PLN02414        303 GGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT  382 (993)
T ss_pred             CCCCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHH
Confidence            34227788888877665431                                                         1  


Q ss_pred             --hhHHHHHHHHHHHHHhccCc------ee-EEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHH
Q psy11784        185 --DDNRPSGKYLVRPLGINLHI------FW-CLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       185 --~~~~~~~~~l~~~L~~~~G~------~~-~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id  255 (284)
                        +++.++..++.++|... |.      ++ -+.+. . ....++.++|.++||.++...  .+.+|+++....|++|||
T Consensus       383 Ia~ri~~la~~l~~~L~~~-G~~~~~~~~f~~vt~~-~-~~~~~v~~~L~~~gI~l~~~~--~~~lrvs~~e~~T~edId  457 (993)
T PLN02414        383 IAQRVHGLAGVFAAGLKKL-GFQVQSLPFFDTVKVK-C-SDADAIADAAAKVGINLRVVD--ANTVTVSFDETTTLEDVD  457 (993)
T ss_pred             HHHHHHHHHHHHHHHHhhc-CCccCCCCCcCeEEEe-c-CCHHHHHHHHHHCCCeeEEec--CCeEEEEeeccCCHHHHH
Confidence              24556677777777663 31      11 11111 1 134779999999999887543  568999999999999999


Q ss_pred             HHHHHHHH
Q psy11784        256 FIVSTLNR  263 (284)
Q Consensus       256 ~~~~~l~~  263 (284)
                      .+++.|..
T Consensus       458 ~L~~~l~~  465 (993)
T PLN02414        458 KLFKVFAG  465 (993)
T ss_pred             HHHHHHcc
Confidence            99999963

>PLN02724 Molybdenum cofactor sulfurase

Probab=97.90  E-value=0.00089  Score=67.93  Aligned_cols=168  Identities=15%  Similarity=0.069  Sum_probs=106.2

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHh--------CCEEEEecccccCccccCccccccccCCCCcEEEec--
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI--------GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--  159 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~--------g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--  159 (284)
                      .+..|.+--+.+..|.+.|    ++.+..+++..        ++++++|=+|+ +|   .  ...+...+.+|++++|  
T Consensus       192 ~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g---~--~piDv~~~~~Dfl~~S~H  261 (805)
T PLN02724        192 AYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CG---T--SPPDLSRYPADFVVVSFY  261 (805)
T ss_pred             CcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cC---C--CCCChhhcCCCEEEEecc
Confidence            3567777778888999888    66665555432        36899999886 33   2  2223334568999886  


Q ss_pred             ccccCCcceeEEEecHHHHHhchh--------------------------------------------------------
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC--------------------------------------------------------  183 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~--------------------------------------------------------  183 (284)
                      |.+++-..+|+++++++..+.+..                                                        
T Consensus       262 K~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I  341 (805)
T PLN02724        262 KIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAI  341 (805)
T ss_pred             eeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHH
Confidence            977643458888888876532210                                                        


Q ss_pred             hhhHHHHHHHHHHHHHhcc-----------C------------ceeEEEEecc--cHH-HHHHHHHHHHCCcEEeecCC-
Q psy11784        184 LDDNRPSGKYLVRPLGINL-----------H------------IFWCLILLSI--TYY-LYRYTRRMKEAKIIVANEGE-  236 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~~-----------G------------~~~~i~~~~~--~~~-~~~~~~~l~~~Gv~~~~~~~-  236 (284)
                      .++.+++.+++.+.|+++.           |            .++.+.+...  ... ...+...+-++||.++.+.. 
T Consensus       342 ~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~C  421 (805)
T PLN02724        342 AMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFC  421 (805)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeecccc
Confidence            1256667777777777641           1            1222233211  011 22234344467888865421 


Q ss_pred             ------------------------------------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        237 ------------------------------------YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       237 ------------------------------------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                                                          ..+.+|+++....|.+|||.+++.|++.+-.
T Consensus       422 a~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~  488 (805)
T PLN02724        422 NPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVS  488 (805)
T ss_pred             CchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhhc
Confidence                                                0267999999999999999999999997743

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=97.88  E-value=0.0026  Score=58.51  Aligned_cols=170  Identities=17%  Similarity=0.181  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.||++=.+.|.-   .    -+++|.++|++||+.||-|=+|+ +|-.    +.-...|-.-|+.
T Consensus       103 ~~~~~~~i~---~~t~ai~~~h~~G~~---~----d~~~i~~~~~~~~i~lIeD~a~a-~g~~----~~g~~~G~~gd~~  167 (363)
T PF01041_consen  103 PEALEKAIT---PKTKAILVVHLFGNP---A----DMDAIRAIARKHGIPLIEDAAQA-FGAR----YKGRPVGSFGDIA  167 (363)
T ss_dssp             HHHHHHHHH---TTEEEEEEE-GGGB----------HHHHHHHHHHTT-EEEEE-TTT-TT-E----ETTEETTSSSSEE
T ss_pred             HHHHHHHhc---cCccEEEEecCCCCc---c----cHHHHHHHHHHcCCcEEEccccc-cCce----eCCEeccCCCCce
Confidence            577888887   567888877777652   2    29999999999999999999997 3321    1112334445888


Q ss_pred             Eec----ccccCCcceeEEEec-HHHHHhchh-------------------------------------h-------hhH
Q psy11784        157 TVG----KPMGNGMPIGAVITS-RKIAESLNC-------------------------------------L-------DDN  187 (284)
Q Consensus       157 ~~s----K~l~~G~p~gav~~~-~~i~~~~~~-------------------------------------l-------~~~  187 (284)
                      +||    |.++.| -.|+++++ +++.+.+..                                     |       ++=
T Consensus       168 ~fSf~~~K~i~~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R  246 (363)
T PF01041_consen  168 IFSFHPTKIITTG-EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARR  246 (363)
T ss_dssp             EEESSTTSSS-SS-S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHH
T ss_pred             EecCCCCCCCcCC-CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHH
Confidence            886    888643 12777775 444443321                                     1       122


Q ss_pred             HHHHHHHHHHHHhcc-------------CceeEEEEe-ccc--HHHHHHHHHHHHCCcEEeecCC--------C------
Q psy11784        188 RPSGKYLVRPLGINL-------------HIFWCLILL-SIT--YYLYRYTRRMKEAKIIVANEGE--------Y------  237 (284)
Q Consensus       188 ~~~~~~l~~~L~~~~-------------G~~~~i~~~-~~~--~~~~~~~~~l~~~Gv~~~~~~~--------~------  237 (284)
                      +++.+++.+.|....             ..++.+.+. +..  .....+.+.|.++||-+.+..+        .      
T Consensus       247 ~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~  326 (363)
T PF01041_consen  247 RENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYY  326 (363)
T ss_dssp             HHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEE
T ss_pred             HHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCcc
Confidence            344455555555541             122222222 221  2478899999999998875321        0      


Q ss_pred             -----C-------CEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        238 -----G-------NVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       238 -----~-------~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                           +       ..|.+-.+...|+++++.+++.|+
T Consensus       327 ~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  327 APGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             ETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence                 0       134443445578999999988774

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=97.80  E-value=9.2e-05  Score=65.97  Aligned_cols=96  Identities=21%  Similarity=0.201  Sum_probs=61.2

Q ss_pred             HHHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc----ccccccc
Q psy11784         77 AQAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH----FWAFQTQ  149 (284)
Q Consensus        77 ~~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~----~~a~~~~  149 (284)
                      .++|++.++.   +...++.|.+|-.....|..++|.+.|++|+++|++||+.|.+|    |- |....    +.....+
T Consensus       108 ~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmD----GA-Rl~~a~~~~~~~~~e~  182 (290)
T PF01212_consen  108 PEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMD----GA-RLANAAAALGVSLAEI  182 (290)
T ss_dssp             HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEE----ET-THHHHHCHHHHHHHHH
T ss_pred             HHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEe----hh-hHHHhhhcccccHHHH
Confidence            6788888875   33569999999888777777889999999999999999999999    43 43210    0011111


Q ss_pred             CCCCcEEEe--cccccCCcceeEEE-ecHHHHH
Q psy11784        150 GAVPDIITV--GKPMGNGMPIGAVI-TSRKIAE  179 (284)
Q Consensus       150 g~~pDiv~~--sK~l~~G~p~gav~-~~~~i~~  179 (284)
                      ----|++++  +|.++  .|.|+++ ++++.++
T Consensus       183 ~~~~D~v~~~~tK~~g--~~~Gavl~~~~~~i~  213 (290)
T PF01212_consen  183 AAGADSVSFGGTKNGG--APGGAVLAGNKEFIA  213 (290)
T ss_dssp             HTTSSEEEEETTSTT---SSSEEEEEESHHHHH
T ss_pred             hhhCCEEEEEEEcccc--cccceEEEechHHHH
Confidence            134677765  46554  4555555 5777543

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=97.80  E-value=0.00081  Score=61.63  Aligned_cols=160  Identities=13%  Similarity=0.052  Sum_probs=94.6

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecccccCCcce
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPI  168 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~~G~p~  168 (284)
                      +++..|.+--.-...|...         .++++.||+++++|=+|+ +|-.   ..-.+..++  ++..--|.+| -..+
T Consensus       137 ~~~~lV~~~h~~t~tG~~~---------~~i~~~~g~~~~VDa~qs-~g~~---~idv~~~~~--~~ss~~K~lG-P~G~  200 (355)
T cd00611         137 PDAAYVHYCSNETIHGVEF---------DEVPDTGGVPLVADMSSN-ILSR---PIDVSKFGV--IYAGAQKNLG-PAGV  200 (355)
T ss_pred             CCCCEEEEeCCcccccEEc---------ceecccCCCeEEEEcccc-ccCC---CCCHHHhCE--EEeecccccC-CCce
Confidence            3444454444444455542         256667999999999998 3211   122233332  2222347663 2348


Q ss_pred             eEEEecHHHHHhchh--------------------------------h-------------hhHHHHHHHHHHHHHhccC
Q psy11784        169 GAVITSRKIAESLNC--------------------------------L-------------DDNRPSGKYLVRPLGINLH  203 (284)
Q Consensus       169 gav~~~~~i~~~~~~--------------------------------l-------------~~~~~~~~~l~~~L~~~~G  203 (284)
                      |.+++++++.+.+..                                +             ++.+++.+++++.|+++.|
T Consensus       201 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~g  280 (355)
T cd00611         201 TVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNG  280 (355)
T ss_pred             EEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            899999987754321                                1             1445666777777776535


Q ss_pred             ceeE-----------EEEe-cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        204 IFWC-----------LILL-SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       204 ~~~~-----------i~~~-~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      ++..           +.+. +.......+...+.++|+...++....+.+|+++...+|++|||.+++.|+++
T Consensus       281 l~~~~~~~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         281 FYRGPVDKRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             ccccCCCHHHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            4211           1111 11111244556778899984433222478999999999999999999999874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=97.78  E-value=0.0014  Score=59.35  Aligned_cols=169  Identities=17%  Similarity=0.171  Sum_probs=106.6

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC------C
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG------A  151 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g------~  151 (284)
                      +.+-..|+..+.+...++-.+-.+..|. -++.+.|++|.++.++.|.+-++|=+|.||+. |   .--+.++      .
T Consensus       160 ~~mla~L~~a~~~~vvLLH~CcHNPTG~-D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~-G---leeDa~~lR~~a~~  234 (396)
T COG1448         160 DGMLADLKTAPEGSVVLLHGCCHNPTGI-DPTEEQWQELADLIKERGLIPFFDIAYQGFAD-G---LEEDAYALRLFAEV  234 (396)
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCCeeeeehhhhhhcc-c---hHHHHHHHHHHHHh
Confidence            3333444444455444555556666775 46899999999999999999999999999964 3   1222222      2


Q ss_pred             CCc-EE--EecccccC-CcceeEEEe---cHHHHHhchh-----------------------------------------
Q psy11784        152 VPD-II--TVGKPMGN-GMPIGAVIT---SRKIAESLNC-----------------------------------------  183 (284)
Q Consensus       152 ~pD-iv--~~sK~l~~-G~p~gav~~---~~~i~~~~~~-----------------------------------------  183 (284)
                      .|. +|  .+||.+|= |-++|++..   +++..+.+..                                         
T Consensus       235 ~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~M  314 (396)
T COG1448         235 GPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEM  314 (396)
T ss_pred             CCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            233 34  47899984 556665443   4444443322                                         


Q ss_pred             hhhHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEcCCCCC
Q psy11784        184 LDDNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLPAMCLT  250 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p~l~~t  250 (284)
                      .+++.++++.|.+.|++.            .|+|.-.-+      ..+=+.+|+ +.||++...    ++|-+   ..++
T Consensus       315 r~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gl------s~~QV~rLree~~IY~v~s----GRi~v---aGl~  381 (396)
T COG1448         315 RQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGL------SPEQVDRLREEFGIYLVAS----GRINV---AGLN  381 (396)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCC------CHHHHHHHHHhccEEEecC----Ceeee---ccCC
Confidence            337777788888888874            444432222      223344555 679999853    34433   3679


Q ss_pred             HHHHHHHHHHHHHH
Q psy11784        251 TENVLFIVSTLNRI  264 (284)
Q Consensus       251 ~~~id~~~~~l~~~  264 (284)
                      ++.|+.+++.|.++
T Consensus       382 ~~ni~~va~ai~~v  395 (396)
T COG1448         382 TSNIDYVAKAIAAV  395 (396)
T ss_pred             hhhHHHHHHHHHhh
Confidence            99999999998765

>PRK06434 cystathionine gamma-lyase; Validated

Probab=97.76  E-value=0.00099  Score=61.77  Aligned_cols=122  Identities=16%  Similarity=0.159  Sum_probs=78.4

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccC-C-
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGN-G-  165 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~-G-  165 (284)
                      ++.+|++|.+.+..+...+    +++|.++|++++  +++|.++.. +.      .....+.-.|++++|  |.++| | 
T Consensus       148 ~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~s-~~------~~~pl~~gaDivv~S~tK~i~G~~d  214 (384)
T PRK06434        148 NYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFAS-PY------NQNPLDLGADVVIHSATKYISGHSD  214 (384)
T ss_pred             CeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCCC-cc------cCCchhcCCCEEEeecccccCCCCC
Confidence            5788899987666666666    999999999999  466988631 11      222334568998876  88876 3 


Q ss_pred             cceeEEEe-cHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc----------------
Q psy11784        166 MPIGAVIT-SRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN----------------  201 (284)
Q Consensus       166 ~p~gav~~-~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~----------------  201 (284)
                      .-.|++++ ++++.+.+..                           +++-.++...+.+.|+..                
T Consensus       215 ~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~  294 (384)
T PRK06434        215 VVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKK  294 (384)
T ss_pred             ceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHH
Confidence            33466666 4455443321                           335555666666666654                


Q ss_pred             ----cCceeEEEEecccHHHHHHHHHHH
Q psy11784        202 ----LHIFWCLILLSITYYLYRYTRRMK  225 (284)
Q Consensus       202 ----~G~~~~i~~~~~~~~~~~~~~~l~  225 (284)
                          .|.|+.+++. ..+.+.+|.+.|.
T Consensus       295 ~~~g~g~~~sf~l~-~~~~~~~f~~~l~  321 (384)
T PRK06434        295 VLRGFGGMLSFELR-SMEDVHKFIRNLE  321 (384)
T ss_pred             hcCCCCceEEEEEC-CHHHHHHHHHhCC
Confidence                4678899985 3444556666554

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=97.74  E-value=0.0062  Score=55.51  Aligned_cols=178  Identities=13%  Similarity=0.155  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .++++++..++++.+  ||    .  |+...+-.--+++++++|++.|+.|++|=+|- |+=-.|.  +. ..... .|+
T Consensus       155 yD~~~k~a~e~kPK~--ii----~--G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~--~p-~P~~~-Adv  222 (413)
T COG0112         155 YDEVEKLAKEVKPKL--II----A--GGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGV--HP-NPLPH-ADV  222 (413)
T ss_pred             HHHHHHHHHHhCCCE--EE----E--CccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhccc--CC-CCCCc-cce
Confidence            577888887777763  11    1  22222233338999999999999999999885 4422222  11 11222 688


Q ss_pred             EEe--cccccCCcceeEEEecH-HHHHhchh---------------------------------hhhHHHHHHHHHHHHH
Q psy11784        156 ITV--GKPMGNGMPIGAVITSR-KIAESLNC---------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       156 v~~--sK~l~~G~p~gav~~~~-~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~  199 (284)
                      ||-  -|.|-|. +-|.+++++ ++.+.+..                                 .+++.++++.|.+.|.
T Consensus       223 VTtTTHKTlrGP-rGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~  301 (413)
T COG0112         223 VTTTTHKTLRGP-RGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALK  301 (413)
T ss_pred             EeCCcccCCCCC-CceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence            865  4999761 236677764 77776655                                 2366677778888887


Q ss_pred             hc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeec-------CC-CCCEEEEEcCCC----CCHHHHHHHH
Q psy11784        200 IN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANE-------GE-YGNVLLFLPAMC----LTTENVLFIV  258 (284)
Q Consensus       200 ~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~-~~~~lr~~p~l~----~t~~~id~~~  258 (284)
                      +.         ...++.+++.+...........|-+-||.+...       ++ ..+-||+-.|..    +.++|..++.
T Consensus       302 ~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia  381 (413)
T COG0112         302 ERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIA  381 (413)
T ss_pred             HcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHH
Confidence            74         223455666432234555555666779988622       11 235688876655    4678888888


Q ss_pred             HHHHHHHHH
Q psy11784        259 STLNRIFTS  267 (284)
Q Consensus       259 ~~l~~~l~~  267 (284)
                      +.+.++++.
T Consensus       382 ~~I~~vl~~  390 (413)
T COG0112         382 DLIADVLDG  390 (413)
T ss_pred             HHHHHHHhc
Confidence            888888765

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.70  E-value=0.0065  Score=55.86  Aligned_cols=90  Identities=20%  Similarity=0.197  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+|+.|.   +.+.|||.=-..|.   ...    +++|.++|++||+++|-|=+|+ +|-+-    --...|-.-|+.
T Consensus       112 ~~~ie~aIt---~~tKAIipVhl~G~---~~d----m~~i~~la~~~~l~vIEDaAqa-~Ga~y----~gk~vGt~Gd~~  176 (374)
T COG0399         112 PDLIEAAIT---PRTKAIIPVHLAGQ---PCD----MDAIMALAKRHGLPVIEDAAQA-HGATY----KGKKVGSFGDIG  176 (374)
T ss_pred             HHHHHHHcc---cCCeEEEEehhccC---CCC----HHHHHHHHHHcCCeEEEEcchh-ccCee----cCcccccccceE
Confidence            577888886   44777775444553   333    9999999999999999999997 43221    112334456777


Q ss_pred             Eec----ccccCCcceeEEEec-HHHHHhch
Q psy11784        157 TVG----KPMGNGMPIGAVITS-RKIAESLN  182 (284)
Q Consensus       157 ~~s----K~l~~G~p~gav~~~-~~i~~~~~  182 (284)
                      +||    |.++.| --|+++++ +++.+.++
T Consensus       177 ~fSF~~~K~ittg-EGGav~tnd~ela~k~~  206 (374)
T COG0399         177 AFSFHATKNLTTG-EGGAVVTNDEELAEKAR  206 (374)
T ss_pred             EEEecCCCCcccc-CceEEEeCCHHHHHHHH
Confidence            775    888854 34788875 55555443

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=97.60  E-value=0.0082  Score=55.02  Aligned_cols=183  Identities=15%  Similarity=0.095  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc---cccCCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF---QTQGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~---~~~g~~p  153 (284)
                      ++.+|+.+++.+.+....++....+..|.   -++-+.+|.++|++||++.|+.-+|+ . ..-+..-..   ...|..|
T Consensus       141 ~~~ie~~i~~~G~~~iLcvltttscfapr---~~D~i~~IakiC~~~~IPhlvNnAYg-v-Q~~~~~~~i~~a~~~GRvd  215 (389)
T PF05889_consen  141 LEAIEAKIEELGADNILCVLTTTSCFAPR---LPDDIEEIAKICKEYDIPHLVNNAYG-V-QSSKCMHLIQQAWRVGRVD  215 (389)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEEESSTTTTB-------HHHHHHHHHHHT--EEEEGTTT-T-T-HHHHHHHHHHHHHSTCS
T ss_pred             HHHHHHHHHHhCCCCeEEEEEecCccCCC---CCccHHHHHHHHHHcCCceEEccchh-h-hHHHHHHHHHHHHhcCCcc
Confidence            56778888766666444444444444333   33569999999999999999999985 4 000000000   0112222


Q ss_pred             c-EEEecccccCCcce-eEEEe--cHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        154 D-IITVGKPMGNGMPI-GAVIT--SRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       154 D-iv~~sK~l~~G~p~-gav~~--~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      - +-.+.|-+=-  |+ |++++  .+..++.+..                             +....+.=.++.++|++
T Consensus       216 a~vqS~dkNF~V--PvGgai~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~  293 (389)
T PF05889_consen  216 AFVQSTDKNFMV--PVGGAIMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLGCTGYGALLKERKASFPYLKERLKK  293 (389)
T ss_dssp             EEEEEHHHHHCE--ESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeecCCCEEe--cCCCcEEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1123333310  11 22222  2334444332                             22344445566666666


Q ss_pred             c-------------cCceeEEEEec----ccHHHHHHHHHHHHCCcEEe----ecCC---------CCCEEEEEcCCCCC
Q psy11784        201 N-------------LHIFWCLILLS----ITYYLYRYTRRMKEAKIIVA----NEGE---------YGNVLLFLPAMCLT  250 (284)
Q Consensus       201 ~-------------~G~~~~i~~~~----~~~~~~~~~~~l~~~Gv~~~----~~~~---------~~~~lr~~p~l~~t  250 (284)
                      +             .-..+++++..    .......+...|+.+||--.    +...         ...++-+.-.+-++
T Consensus       294 ~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~  373 (389)
T PF05889_consen  294 WAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMT  373 (389)
T ss_dssp             HHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--
T ss_pred             HHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCC
Confidence            5             22344555541    11346788899999976422    1111         11577887788999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11784        251 TENVLFIVSTLNRIFT  266 (284)
Q Consensus       251 ~~~id~~~~~l~~~l~  266 (284)
                      ++|+|.++++|+++++
T Consensus       374 ~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  374 REEVDYFVKRLDKIIK  389 (389)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999999874

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=97.55  E-value=0.0072  Score=56.43  Aligned_cols=157  Identities=18%  Similarity=0.232  Sum_probs=84.1

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecc----cccCccccCccccccccCCCCcEEE-ecccc
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEI----QCGMGRSGSHFWAFQTQGAVPDIIT-VGKPM  162 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv----~tG~gr~G~~~~a~~~~g~~pDiv~-~sK~l  162 (284)
                      .+++|+|++.--. .-|.+-.    +++|.++++++|+++|+ -+    .+++-+-|.       +  -.||++ .+|.+
T Consensus       195 ~~~~a~v~vq~Pn-~~G~~ed----~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge-------~--GADI~vg~~Q~f  259 (429)
T PF02347_consen  195 DDDTAAVMVQNPN-TFGVFED----IKEIADIAHAAGALVIV-GADPNALGGLKSPGE-------Y--GADIVVGEHQTF  259 (429)
T ss_dssp             STTEEEEEEESS--TTSB--T----HHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGG-------G--T-SEEEECCTTT
T ss_pred             ccCeEEEEeecCC-CCceEee----HHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhh-------c--CccEEeeCCCCC
Confidence            3569999988433 3455443    99999999999999987 22    112222222       1  247763 35666


Q ss_pred             c-----CCcceeEEEecHHHHHhchh------------------------------------------------------
Q psy11784        163 G-----NGMPIGAVITSRKIAESLNC------------------------------------------------------  183 (284)
Q Consensus       163 ~-----~G~p~gav~~~~~i~~~~~~------------------------------------------------------  183 (284)
                      |     ||=-.|++.++++++..+..                                                      
T Consensus       260 g~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G  339 (429)
T PF02347_consen  260 GIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLG  339 (429)
T ss_dssp             T---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhC
Confidence            5     23346777788887776644                                                      


Q ss_pred             -------hhhHHHHHHHHHHHHHhc-----cC-cee-EEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCC
Q psy11784        184 -------LDDNRPSGKYLVRPLGIN-----LH-IFW-CLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCL  249 (284)
Q Consensus       184 -------l~~~~~~~~~l~~~L~~~-----~G-~~~-~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~  249 (284)
                             -++...+..|+.++|.+.     .+ .|+ .+..........++.+++...|+....  +..+.+-+++.=+.
T Consensus       340 ~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~~~~~~l~~~~~~~gl~~~~--~~~~~~li~~TE~~  417 (429)
T PF02347_consen  340 PEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKDKEVEELLKRGIEGGLNLRY--PDDGALLICVTETR  417 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS-HHHHHHHHTT----EEEGG--G-SSEEEEE--TT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCcHHHHHHHHHHHhcCCCccc--cCCCeEEEEccCCC
Confidence                   125667788899998885     11 111 111111223444566666677755543  33458889999999


Q ss_pred             CHHHHHHHHHHH
Q psy11784        250 TTENVLFIVSTL  261 (284)
Q Consensus       250 t~~~id~~~~~l  261 (284)
                      |++|||.+++.|
T Consensus       418 t~edid~lv~~f  429 (429)
T PF02347_consen  418 TKEDIDRLVEAF  429 (429)
T ss_dssp             -HHHHHHHHH--
T ss_pred             CHHHHHHHHhcC
Confidence            999999999875

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK15029 arginine decarboxylase; Provisional

Probab=97.54  E-value=0.005  Score=61.55  Aligned_cols=46  Identities=20%  Similarity=0.132  Sum_probs=36.9

Q ss_pred             HHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        219 RYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       219 ~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      .+.+.|.++||.+--..  .+.+-+..+...|+++++.+++.|.++-+
T Consensus       558 ~l~~~L~~~gI~~E~~~--~~~vL~l~s~g~t~~~~~~L~~aL~~~~~  603 (755)
T PRK15029        558 LVTAWLGRHGIVPTRTT--DFQIMFLFSMGVTRGKWGTLVNTLCSFKR  603 (755)
T ss_pred             HHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            68888888899997643  45666777889999999999999987744

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=97.39  E-value=0.032  Score=57.05  Aligned_cols=156  Identities=12%  Similarity=0.059  Sum_probs=100.5

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc---cCccccCccccccccCCCCcEEE-eccccc--
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC---GMGRSGSHFWAFQTQGAVPDIIT-VGKPMG--  163 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t---G~gr~G~~~~a~~~~g~~pDiv~-~sK~l~--  163 (284)
                      +++++++- .++..|.+..    +++|.++++++|+++|++=-.-   ++-+-|+         .-.||++ .+|.+|  
T Consensus       194 ~~~~v~~q-~Pn~~G~ied----~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge---------~GaDi~vg~~q~fg~p  259 (939)
T TIGR00461       194 DVFGCLLQ-YPATDGSILD----YKQLIDALHSHKSLVSVAADLMALTLLTPPGH---------YGADIVLGSSQRFGVP  259 (939)
T ss_pred             CEEEEEEE-CCCCCeEEec----HHHHHHHHHHcCCEEEEEechHHhCCcCCHHH---------cCCcEEeeCCCccCCC
Confidence            46777653 2344566654    8999999999999999854332   2212222         1256652 235443  


Q ss_pred             --C-CcceeEEEecHHHHHhchh---------------------------------------------------------
Q psy11784        164 --N-GMPIGAVITSRKIAESLNC---------------------------------------------------------  183 (284)
Q Consensus       164 --~-G~p~gav~~~~~i~~~~~~---------------------------------------------------------  183 (284)
                        + |--.|++.+++++...+..                                                         
T Consensus       260 ~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~G  339 (939)
T TIGR00461       260 MGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKG  339 (939)
T ss_pred             CCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHH
Confidence              2 3226677777777766543                                                         


Q ss_pred             hh----hHHHHHHHHHHHHHhccCc-------eeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHH
Q psy11784        184 LD----DNRPSGKYLVRPLGINLHI-------FWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       184 l~----~~~~~~~~l~~~L~~~~G~-------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~  252 (284)
                      ++    ++..+..++.++|.+. |+       |--+.+.-....+.++.+.+.++||.++..  .++.++++..-..|++
T Consensus       340 L~~iA~~~~~~a~~l~~~L~~~-G~~~~~~~fF~~~~v~~~~~~~~~i~~~~~~~gi~l~~~--~~~~i~~s~~E~~t~~  416 (939)
T TIGR00461       340 LKNIARRIHSLTSILANGLEND-PHELINKTWFDTLTVKVGNGISSELLKAAEEFNINLRAV--DTTTVGIALDETTTKA  416 (939)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCccceEEEEeCCCCHHHHHHHHHHCCCeeeec--CCCEEEEEeecCCCHH
Confidence            22    4555667788888773 42       112222111124778999999999998863  3478999999999999


Q ss_pred             HHHHHHHHHH
Q psy11784        253 NVLFIVSTLN  262 (284)
Q Consensus       253 ~id~~~~~l~  262 (284)
                      ||+.+++.|.
T Consensus       417 di~~l~~~~~  426 (939)
T TIGR00461       417 DVENLLKVFD  426 (939)
T ss_pred             HHHHHHHHhc
Confidence            9999999995

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=97.31  E-value=0.071  Score=49.26  Aligned_cols=170  Identities=14%  Similarity=0.148  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEE--ecccccC-ccccCccccccccCCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIA--DEIQCGM-GRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~--DEv~tG~-gr~G~~~~a~~~~g~~p  153 (284)
                      ++.|++. +  ..++++++++--...|....-    +++|.+.++++|+++|+  |=+--++ -.-|+         .-.
T Consensus       200 ~~~l~~~-~--~~~~~gv~vQyP~~~G~~~~d----~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe---------~GA  263 (450)
T COG0403         200 LDDLESA-D--DGDVFGVLVQYPNTFGIVEED----LRALIEAAHSAGALVIVAADPLALGLLKPPGE---------FGA  263 (450)
T ss_pred             hhhhhhc-c--ccCeEEEEEecCCCCCccchh----HHHHHHHHhhcCCEEEEEechhHhhccCCccc---------cCC
Confidence            4555554 2  346999999854433323333    89999999999998875  3222122 01122         124


Q ss_pred             cEEE-----eccccc-CCcceeEEEecHHHHHhchh--------------------------------------------
Q psy11784        154 DIIT-----VGKPMG-NGMPIGAVITSRKIAESLNC--------------------------------------------  183 (284)
Q Consensus       154 Div~-----~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------------------------------  183 (284)
                      ||++     ||=.++ ||--.|++.++++.+..+..                                            
T Consensus       264 DIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~  343 (450)
T COG0403         264 DIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLAL  343 (450)
T ss_pred             ceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHH
Confidence            5553     444555 34456777788888776654                                            


Q ss_pred             -----------------hhhHHHHHHHHHHHHHhc-cCce-------eEEEEecccHHHHHHHHHHHHCCcEEeecCCCC
Q psy11784        184 -----------------LDDNRPSGKYLVRPLGIN-LHIF-------WCLILLSITYYLYRYTRRMKEAKIIVANEGEYG  238 (284)
Q Consensus       184 -----------------l~~~~~~~~~l~~~L~~~-~G~~-------~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~  238 (284)
                                       -++..++..++.++|++. .|.-       .-+.+.-.......+.++....|+-++...  .
T Consensus       344 ~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~~--~  421 (450)
T COG0403         344 AASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPEEVAEALLAAAIAGGINLRRVD--A  421 (450)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecchhHHHHHHHHHHhcCCceeeec--C
Confidence                             126667788888888864 2221       111121111456677778888899888643  3


Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        239 NVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       239 ~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      ..+-++..=+.|+++|+.+++.|...
T Consensus       422 ~~~~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         422 DTVLIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             CceEEEeecccCHHHHHHHHHHHhhh
Confidence            46667767778999999999888654

>KOG2040|consensus

Probab=97.26  E-value=0.039  Score=53.42  Aligned_cols=231  Identities=21%  Similarity=0.266  Sum_probs=132.3

Q ss_pred             HHHHHHHcc-----CCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784          7 ALQLARAYT-----GRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus         7 AlklAr~~~-----~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      .++..|.|.     |.+.|-...-|-||.--.+....+.+            .+|..-...+  +-|        +.+|+
T Consensus       614 GL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Magmk------------vvpV~~~~~G--~id--------~~dLk  671 (1001)
T KOG2040|consen  614 GLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMK------------VVPVGCDANG--NID--------MVDLK  671 (1001)
T ss_pred             hHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCE------------EEEeeccCCC--Ccc--------HHHHH
Confidence            456667763     45666667888999765554443322            1221110001  111        67788


Q ss_pred             HHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecc----cccCccccCcccccc--ccCCCCcE
Q psy11784         82 NIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEI----QCGMGRSGSHFWAFQ--TQGAVPDI  155 (284)
Q Consensus        82 ~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv----~tG~gr~G~~~~a~~--~~g~~pDi  155 (284)
                      +.-+++.++.||+++-- ++..|+..+   -++.++++-++||--+.+|-+    |-|+.|-|.  ++.+  |.++.-  
T Consensus       672 ~kaekh~~~Laa~MvTY-PST~GvfE~---~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd--~GaDV~HLNLHK--  743 (1001)
T KOG2040|consen  672 AKAEKHKDNLAALMVTY-PSTHGVFEE---GIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGD--IGADVCHLNLHK--  743 (1001)
T ss_pred             HHHHHhhhhhheeEEec-ccccccccc---cHHHHHHHHHhcCCEEEecCCCccceecccCCcc--ccccceeecccc--
Confidence            88888888898887752 344454332   378899999999999999975    556655553  2221  111110  


Q ss_pred             EEecccccCC-cceeEEEecHHHHHhchh-------------------------------------------hh----hH
Q psy11784        156 ITVGKPMGNG-MPIGAVITSRKIAESLNC-------------------------------------------LD----DN  187 (284)
Q Consensus       156 v~~sK~l~~G-~p~gav~~~~~i~~~~~~-------------------------------------------l~----~~  187 (284)
                       ||.=.-||| -.+|-+.+.+.+...+..                                           +.    -+
T Consensus       744 -TFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~A  822 (1001)
T KOG2040|consen  744 -TFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIA  822 (1001)
T ss_pred             -eeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHH
Confidence             111111221 112222223322222211                                           11    22


Q ss_pred             HHHHHHHHHHHHhc--------cCceeEEEEe----c----ccHHHHHHHHHHHHCCcEEeec-CCCCCEEEEEcCCCCC
Q psy11784        188 RPSGKYLVRPLGIN--------LHIFWCLILL----S----ITYYLYRYTRRMKEAKIIVANE-GEYGNVLLFLPAMCLT  250 (284)
Q Consensus       188 ~~~~~~l~~~L~~~--------~G~~~~i~~~----~----~~~~~~~~~~~l~~~Gv~~~~~-~~~~~~lr~~p~l~~t  250 (284)
                      --++.|+.++|+.-        .| .++-+|.    +    ....+..++++|++.|+....- -|-.+++.+.|.=.-+
T Consensus       823 iLNaNYMakRLe~hYkil~~~~~~-~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~  901 (1001)
T KOG2040|consen  823 ILNANYMAKRLESHYKILFRGENG-LVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESED  901 (1001)
T ss_pred             hhhhHHHHHHHhhccceeEecCCc-ceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCccccccCCceEeccCcccc
Confidence            23456677777654        33 3444443    1    1235778999999999876422 1345789999988889


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy11784        251 TENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       251 ~~~id~~~~~l~~~l~~~~  269 (284)
                      ++|+|++++++-.+-+++.
T Consensus       902 k~ElDRfcdAliSIreEI~  920 (1001)
T KOG2040|consen  902 KAELDRFCDALISIREEIA  920 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999988776654

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=97.14  E-value=0.013  Score=54.27  Aligned_cols=95  Identities=18%  Similarity=0.180  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhc-CCC-ee-EEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEAH-RDN-IA-TLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~-~~~-va-avi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .++|++.|++. ..+ +. +|+.----...|.+-+    +++|.++|++|+++|.+|-++.|....-+ .+-....|+ .
T Consensus       178 ~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~-~~~~~~~gi~~  252 (373)
T PF00282_consen  178 IEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSP-EYRHLLFGIER  252 (373)
T ss_dssp             HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHC-TTGGGGTTGGG
T ss_pred             HHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhhccccceeeeecccccccccccc-ccccccccccc
Confidence            67788877632 222 33 3433333334676666    99999999999999999988877321111 111112333 2


Q ss_pred             CcEEEe--cccccCCcceeEEEecHH
Q psy11784        153 PDIITV--GKPMGNGMPIGAVITSRK  176 (284)
Q Consensus       153 pDiv~~--sK~l~~G~p~gav~~~~~  176 (284)
                      .|-+++  -|.++..++.|.++.+++
T Consensus       253 adSit~d~HK~l~~P~~~~~~l~r~~  278 (373)
T PF00282_consen  253 ADSITIDPHKWLGVPYGCGVLLVRDK  278 (373)
T ss_dssp             ESEEEEETTTTTS-SSS-EEEEESSG
T ss_pred             ccccccchhhhhcCCccceeEEeecc
Confidence            577765  499987789999998763

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=97.14  E-value=0.009  Score=56.66  Aligned_cols=93  Identities=16%  Similarity=0.038  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcc-ccCcccccc-ccCC-CC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGR-SGSHFWAFQ-TQGA-VP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr-~G~~~~a~~-~~g~-~p  153 (284)
                      .+++++.+++....= +|+.--.....|.+-+    +++|.++|++|++++.+|-++.||-- .-..  ... .+++ ..
T Consensus       195 ~~~l~~~i~~~t~~g-~vV~~aGtT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~--~~~~~f~l~~v  267 (460)
T COG0076         195 VDALEEAIDENTIGG-VVVGTAGTTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEP--DGRWDFGLEGV  267 (460)
T ss_pred             HHHHHHHHHhhccCc-eEEEEecCCCCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCc--cchhhcCCCCc
Confidence            678888888433220 1322222223444444    99999999999999999999887621 0000  001 1334 35


Q ss_pred             cEEEec--ccccCCcceeEEEecHH
Q psy11784        154 DIITVG--KPMGNGMPIGAVITSRK  176 (284)
Q Consensus       154 Div~~s--K~l~~G~p~gav~~~~~  176 (284)
                      |-++++  |.+..-++.|+++.+++
T Consensus       268 dSIt~d~HK~g~aP~~~G~il~rd~  292 (460)
T COG0076         268 DSITVDGHKYGLAPIGCGVVLFRDE  292 (460)
T ss_pred             eEEEECcccccCCCCCceEEEEECH
Confidence            666654  76655577889998765

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=97.13  E-value=0.018  Score=53.72  Aligned_cols=88  Identities=14%  Similarity=0.191  Sum_probs=54.9

Q ss_pred             HHHHHHHHhcCCCee---EEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         78 QAARNIMEAHRDNIA---TLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        78 ~~l~~~i~~~~~~va---avi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      +.+++.+++++..-+   +||+-|-.  .|....    +++|.++|+++++.|++||+|.+.-+...  +-......-.|
T Consensus       154 ~~i~~~l~~~p~~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~--lp~~a~~~gad  225 (417)
T PF01276_consen  154 EDIEEALKEHPDAKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFHP--LPRSALALGAD  225 (417)
T ss_dssp             HHHHHHHHHCTTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCSG--GGTTCSSTTSS
T ss_pred             HHHHHHHHhCccccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEccccccccCCC--CccchhhccCc
Confidence            678888887765544   77888853  466666    99999999999999999999975322112  12223445566


Q ss_pred             -------EEEec--ccccCCc-ceeEEEec
Q psy11784        155 -------IITVG--KPMGNGM-PIGAVITS  174 (284)
Q Consensus       155 -------iv~~s--K~l~~G~-p~gav~~~  174 (284)
                             +++-|  |.+++ + .-+.+-.+
T Consensus       226 ~~~~~~~~vvqS~HKtL~a-ltQts~lh~~  254 (417)
T PF01276_consen  226 RPNDPGIIVVQSTHKTLPA-LTQTSMLHVK  254 (417)
T ss_dssp             -CTSBEEEEEEEHHHHSSS--TT-EEEEEE
T ss_pred             cccccceeeeechhhcccc-cccceEEEec
Confidence                   77766  88764 3 23444443

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=96.83  E-value=0.0029  Score=57.50  Aligned_cols=97  Identities=21%  Similarity=0.222  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhcCCCeeEEE-Ecc----eecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc------CccccCcccc
Q psy11784         77 AQAARNIMEAHRDNIATLI-CEP----VFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG------MGRSGSHFWA  145 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi-~Ep----v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG------~gr~G~~~~a  145 (284)
                      +++.++.|.   +++++++ +-|    ++|-.+...     ++++.+++++|++++|.|-.-..      +|-.++ .-.
T Consensus       126 ~~Dye~AI~---e~Ta~ll~Vh~Sn~~i~GFt~~~~-----~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~E-p~v  196 (367)
T PF03841_consen  126 LSDYEKAIT---ENTAALLKVHTSNFRIQGFTGEVS-----LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDE-PTV  196 (367)
T ss_dssp             -------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT---------
T ss_pred             ccccccccc---cccccccccccccccccccccccc-----HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccc-cHH
Confidence            445555554   5566653 543    344444433     89999999999999999953311      111111 111


Q ss_pred             ccccCCCCcEEEec--ccccCCcceeEEEecHHHHHhchh
Q psy11784        146 FQTQGAVPDIITVG--KPMGNGMPIGAVITSRKIAESLNC  183 (284)
Q Consensus       146 ~~~~g~~pDiv~~s--K~l~~G~p~gav~~~~~i~~~~~~  183 (284)
                      .+....-.|+||||  |-|||- -.|.+++++++++.++.
T Consensus       197 ~~~~~~GaDlV~fSGdKlLGGP-QaGiI~Gkk~lI~~lk~  235 (367)
T PF03841_consen  197 QEYLAAGADLVTFSGDKLLGGP-QAGIIVGKKELIEKLKK  235 (367)
T ss_dssp             --CCCCT-SEEEEETTSSSSS--S-EEEEEEHHHHHHHHH
T ss_pred             HHHhhcCCCEEEEECCCcCCCC-CeEEEEeCHHHHHHHhh
Confidence            12233458999997  888763 35888899999998865

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=96.76  E-value=0.12  Score=51.37  Aligned_cols=48  Identities=19%  Similarity=0.245  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        217 LYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       217 ~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +..+.+.|.++||.+--..  .+.+-+..+...|+++++.+++.|.++-+
T Consensus       511 g~~l~~~L~e~gI~~E~~d--~~~vL~l~s~g~t~~~~~~L~~aL~~f~~  558 (713)
T PRK15399        511 AALVAKFLDERGIVVEKTG--PYNLLFLFSIGIDKTKAMGLLRGLTEFKR  558 (713)
T ss_pred             HHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            5678888999999997643  56777777889999999999999987743

>PRK13578 ornithine decarboxylase; Provisional

Probab=96.75  E-value=0.079  Score=52.79  Aligned_cols=49  Identities=18%  Similarity=0.167  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        217 LYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       217 ~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +..+.+.|.++||.+--..  .+.+-+..+...|+++++.+++.|.++-+.
T Consensus       517 g~~l~~~L~e~gI~~E~~d--~~~vL~l~s~g~t~~~~~~Lv~aL~~f~~~  565 (720)
T PRK13578        517 ATILANYLRENGIVPEKCD--LNSILFLLTPAEDMAKLQQLVAMLARFEKH  565 (720)
T ss_pred             HHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            4678888888899997643  466777778899999999999999877443

>KOG0629|consensus

Probab=96.75  E-value=0.019  Score=52.85  Aligned_cols=177  Identities=15%  Similarity=0.146  Sum_probs=108.2

Q ss_pred             HHHHHHHHHhcC-CC-eeEEEEcceec--CCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc----cc
Q psy11784         77 AQAARNIMEAHR-DN-IATLICEPVFV--VHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF----QT  148 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~-vaavi~Epv~~--~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~----~~  148 (284)
                      .++||+.|.... .+ +- +++....|  .-|..-+    |..+.++|++|+.++.+|-+..|    |- ..+.    ..
T Consensus       237 ~~dLe~kile~k~kg~~P-f~vnaTaGTTV~GAFDd----L~~iadiC~k~~lWmHvDAAwGG----gl-LmS~k~R~kl  306 (510)
T KOG0629|consen  237 PDDLEKKILEAKAKGGVP-FFVNATAGTTVLGAFDD----LNGIADICEKHKLWMHVDAAWGG----GL-LMSRKHRHKL  306 (510)
T ss_pred             hHHHHHHHHHHHhcCCCC-eEEEecCCceeeeccCc----HHHHHHHHHhcCEEEEeeccccc----cc-ccChhhHhhc
Confidence            577888776322 22 32 22222222  2344444    99999999999999999977654    11 1111    22


Q ss_pred             cCCC-CcEEEec--ccccCCcceeEEEecHHH-HHh---------chh--------------------------------
Q psy11784        149 QGAV-PDIITVG--KPMGNGMPIGAVITSRKI-AES---------LNC--------------------------------  183 (284)
Q Consensus       149 ~g~~-pDiv~~s--K~l~~G~p~gav~~~~~i-~~~---------~~~--------------------------------  183 (284)
                      .|+. .|-+++.  |-+|..++.++.+.+.+- .+.         |.+                                
T Consensus       307 ~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwka  386 (510)
T KOG0629|consen  307 TGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKA  386 (510)
T ss_pred             cCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHh
Confidence            4664 4677775  888888899988887654 111         111                                


Q ss_pred             ---------hhhHHHHHHHHHHHHHhccCceeE---------EEEe--c-------c-cH-------HHHHHHHHHHHCC
Q psy11784        184 ---------LDDNRPSGKYLVRPLGINLHIFWC---------LILL--S-------I-TY-------YLYRYTRRMKEAK  228 (284)
Q Consensus       184 ---------l~~~~~~~~~l~~~L~~~~G~~~~---------i~~~--~-------~-~~-------~~~~~~~~l~~~G  228 (284)
                               ++++-++++||.++|++.-|...-         +.+.  |       . .+       .+-.+-..++++|
T Consensus       387 KG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~G  466 (510)
T KOG0629|consen  387 KGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKG  466 (510)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhcc
Confidence                     457888999999999986332211         1111  1       1 11       2334566788888


Q ss_pred             cEEe---ecCCCCCEEE--EEcCCCCCHHHHHHHHHHHHHH
Q psy11784        229 IIVA---NEGEYGNVLL--FLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       229 v~~~---~~~~~~~~lr--~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      ....   |.+..+|.+|  +++| +.+.+|+|.+++.|++.
T Consensus       467 t~Mi~YqPl~~~~nffr~v~sn~-a~~~ad~dflldEIerl  506 (510)
T KOG0629|consen  467 TTMIGYQPLGDKPNFFRMVISNP-ALTEADLDFLLDEIERL  506 (510)
T ss_pred             ceeeEecccccccchhheecccc-hhhhhhHHHHHHHHHHh
Confidence            6653   3333445444  4555 77999999999988765

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=96.54  E-value=0.056  Score=53.76  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        217 LYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       217 ~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +..+.+.|.++||.+--..  .+.+-|..+...|+++++.+++.|.++-+
T Consensus       511 g~~v~~~L~e~gI~~E~~d--~~~iLfl~s~g~t~~~~~~L~~aL~~f~~  558 (714)
T PRK15400        511 ASIVAKYLDEHGIVVEKTG--PYNLLFLFSIGIDKTKALSLLRALTDFKR  558 (714)
T ss_pred             HHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            5567888989999997643  56777778889999999999999987643

>PLN02452 phosphoserine transaminase

Probab=96.13  E-value=0.23  Score=45.75  Aligned_cols=135  Identities=10%  Similarity=0.025  Sum_probs=89.2

Q ss_pred             CEEEEecccccCccccCccccccccCCCCcEEEecccccCCcceeEEEecHHHHHhchh---------------------
Q psy11784        125 GVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNC---------------------  183 (284)
Q Consensus       125 ~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~---------------------  183 (284)
                      +++|+|=+++ +|  +. ..-.+.+++  |+..--|.+| --.++.+++++++.+....                     
T Consensus       171 ~~lvVDa~Ss-~g--~~-pidv~~~~v--~~~saqK~lG-P~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP  243 (365)
T PLN02452        171 VPLVADMSSN-FL--SK-PVDVSKYGV--IYAGAQKNVG-PSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTP  243 (365)
T ss_pred             CeEEEECCcc-cc--Cc-ccCHHHcCE--EEEecccccC-CCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCCh
Confidence            8999998887 32  11 234455565  6666669884 1238899999988765432                     


Q ss_pred             ------------------------hhhHHHHHHHHHHHHHhccCceeE-----------EEEe-cccHHHHHHHHHHHHC
Q psy11784        184 ------------------------LDDNRPSGKYLVRPLGINLHIFWC-----------LILL-SITYYLYRYTRRMKEA  227 (284)
Q Consensus       184 ------------------------l~~~~~~~~~l~~~L~~~~G~~~~-----------i~~~-~~~~~~~~~~~~l~~~  227 (284)
                                              .++.+++.+++.+.|++..|++..           +.+. +......+|.+.+.++
T Consensus       244 ~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~~~~  323 (365)
T PLN02452        244 PCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSELEAEFVKEAAKA  323 (365)
T ss_pred             hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCchhHHHHHHHHHHC
Confidence                                    125567777888888764343111           1111 3334678899999999


Q ss_pred             CcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        228 KIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       228 Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      |+...++...-+.+|+..==.++.++++.+++.++++-+
T Consensus       324 g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~  362 (365)
T PLN02452        324 GMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQA  362 (365)
T ss_pred             CCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHH
Confidence            999987643223388876556799999999988877654

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=95.69  E-value=0.32  Score=45.02  Aligned_cols=51  Identities=6%  Similarity=-0.006  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        217 LYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       217 ~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      ..++.+.|.++|+.+.++..  .++.+|+.-==.++++|++.+++.|+=+...
T Consensus       321 ~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~  373 (374)
T TIGR01365       321 AKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFAL  373 (374)
T ss_pred             HHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence            57899999999998876532  3478999855568999999999999876653

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=95.67  E-value=0.78  Score=42.25  Aligned_cols=139  Identities=13%  Similarity=0.042  Sum_probs=85.5

Q ss_pred             HHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCCcceeEEEecHHHHHhchh-------------
Q psy11784        119 YIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNGMPIGAVITSRKIAESLNC-------------  183 (284)
Q Consensus       119 l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G~p~gav~~~~~i~~~~~~-------------  183 (284)
                      +.+.+++++|+|=+=+ ++  +. .+-.+.+    |++..|  |.+|. -.++.++.+++..+....             
T Consensus       163 ~~~~~~~llvvD~sS~-~~--s~-pid~~~~----dvi~agsQKnlgP-~Gltvvivs~~al~~~~~~~p~~ldy~~~~~  233 (364)
T PRK12462        163 AAGLPDSPLIADMSSD-FM--SR-PFDVEAY----GMVYAHAQKNLGP-AGVTVAIIRRALLERVPDTLPPMLDFRTHVE  233 (364)
T ss_pred             ccccCCCeEEEEcCch-hh--CC-CCChHHc----cEEEeeccccCCC-CceEEEEECHHHHhhccccCCchhhHHHHHh
Confidence            3444799999995543 31  11 2233333    777655  99972 236778889988765432             


Q ss_pred             -------------------h--------------hhHHHHHHHHHHHHHhccCceeE-----------EEEe-cccHHHH
Q psy11784        184 -------------------L--------------DDNRPSGKYLVRPLGINLHIFWC-----------LILL-SITYYLY  218 (284)
Q Consensus       184 -------------------l--------------~~~~~~~~~l~~~L~~~~G~~~~-----------i~~~-~~~~~~~  218 (284)
                                         +              ++.+++++.+++.+++..|++..           +.+. ++.....
T Consensus       234 ~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~l~~  313 (364)
T PRK12462        234 HRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQPRLDT  313 (364)
T ss_pred             cCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCHHHHH
Confidence                               1              13345556666666665333322           2222 4456678


Q ss_pred             HHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        219 RYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       219 ~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +|.+.+.++|+.-..+...-+.+|.+.=-.++.++++.+++-++++-+
T Consensus       314 ~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~  361 (364)
T PRK12462        314 LFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAI  361 (364)
T ss_pred             HHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            899999999998865432234588876556788888888877766543

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=95.55  E-value=0.066  Score=48.27  Aligned_cols=44  Identities=16%  Similarity=0.144  Sum_probs=33.6

Q ss_pred             HHHHHHHHHCCcEEeecCC---CCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        218 YRYTRRMKEAKIIVANEGE---YGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       218 ~~~~~~l~~~Gv~~~~~~~---~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      ......|++.||+.+.+..   ...++|+  ++..++++.|.++++|..
T Consensus       315 ~DC~~~l~~~~I~tr~G~~fga~~ryVRl--Sml~~~d~Fd~l~~rL~~  361 (363)
T PF04864_consen  315 EDCYAVLREAKIITRSGVLFGADSRYVRL--SMLKRDDDFDQLLERLSK  361 (363)
T ss_dssp             SSHHHHHHCTTEEEEEGGGGTS-TTEEEE--ESSS-HHHHHHHHHHHHC
T ss_pred             ccHHHHHHhCCcccCCCCccCCCCCeEEE--eccCCHHHHHHHHHHHHh
Confidence            3455667788999987744   3468998  689999999999999964

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK12566 glycine dehydrogenase; Provisional

Probab=95.54  E-value=2.4  Score=43.72  Aligned_cols=155  Identities=16%  Similarity=0.126  Sum_probs=98.6

Q ss_pred             CCeeEEEEc-ceecCCCcccCChhHHHHHHHHHHHhCCEEEEec--c-cccCccccCccccccccCCCCcEEE-----ec
Q psy11784         89 DNIATLICE-PVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADE--I-QCGMGRSGSHFWAFQTQGAVPDIIT-----VG  159 (284)
Q Consensus        89 ~~vaavi~E-pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE--v-~tG~gr~G~~~~a~~~~g~~pDiv~-----~s  159 (284)
                      +++++|++. |  +..|.+..    +++|.++++++|+++|+-=  . .+.+-.-|.         .-.||++     ||
T Consensus       207 ~~~~~v~vq~P--~~~G~i~d----~~~i~~~~h~~gal~~~~~d~laL~ll~~Pge---------~GADI~vG~~Q~fG  271 (954)
T PRK12566        207 HAVFGALLQYP--DTHGEIRD----LRPLIDQLHGQQALACVAADLLSLLVLTPPGE---------LGADVVLGSTQRFG  271 (954)
T ss_pred             CCEEEEEEECC--CCceEEcc----HHHHHHHHHHcCCEEEEEeCHHHHhCCCChhh---------cCCcEEeeCCCcCC
Confidence            468999874 4  33455543    8999999999999977321  1 112211122         1256763     33


Q ss_pred             ccccCCcc-eeEEEecHHHHHhchh-------------------------------------------------------
Q psy11784        160 KPMGNGMP-IGAVITSRKIAESLNC-------------------------------------------------------  183 (284)
Q Consensus       160 K~l~~G~p-~gav~~~~~i~~~~~~-------------------------------------------------------  183 (284)
                      =.++.|=| .|++.+++++...+..                                                       
T Consensus       272 vp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp  351 (954)
T PRK12566        272 VPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGP  351 (954)
T ss_pred             CCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCh
Confidence            33343324 6777778887776654                                                       


Q ss_pred             --hh----hHHHHHHHHHHHHHhccCc-------eeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCC
Q psy11784        184 --LD----DNRPSGKYLVRPLGINLHI-------FWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLT  250 (284)
Q Consensus       184 --l~----~~~~~~~~l~~~L~~~~G~-------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t  250 (284)
                        +.    ++..+..++.+.|.+ .|+       |--+.+. ....+.++.+++.++|+.++..  ..+.+.++.-=++|
T Consensus       352 ~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~~~fF~~~~v~-~~~~~~~~~~~a~~~~~n~r~~--~~~~~~~s~de~~~  427 (954)
T PRK12566        352 EGLKRIAQRVHRLTAILAAGLEA-KGIKRLNRHFFDTLTLE-VGGAQAAIIESAEAARINLRIL--GRGRLGVSLDETCD  427 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCccceEEEE-ccCCHHHHHHHHHHCCCeeEEe--CCCeEEEEeCCCCC
Confidence              21    355566788888887 442       2222221 1114678889999999999864  35678888788899


Q ss_pred             HHHHHHHHHHHH
Q psy11784        251 TENVLFIVSTLN  262 (284)
Q Consensus       251 ~~~id~~~~~l~  262 (284)
                      .+|++.+++.|.
T Consensus       428 ~~~~~~~~~~f~  439 (954)
T PRK12566        428 EATVARLFDIFL  439 (954)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999984

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=94.93  E-value=0.16  Score=46.79  Aligned_cols=98  Identities=14%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ..+++.+|..+..-.-- +..+-.+..|.+.     ++++.++|++||+++|+|..- |. +.-...--....-.-+|+|
T Consensus       146 ~~d~~~AIne~ta~llk-V~s~~~~f~~~l~-----~~~l~~ia~~~~lpvivD~aS-g~-~v~~e~~l~~~la~GaDLV  217 (395)
T COG1921         146 LKDYELAINENTALLLK-VHSSNYGFTGMLS-----EEELVEIAHEKGLPVIVDLAS-GA-LVDKEPDLREALALGADLV  217 (395)
T ss_pred             HHHHHHHhccCCeeEEE-Eeecccccccccc-----HHHHHHHHHHcCCCEEEecCC-cc-ccccccchhHHHhcCCCEE
Confidence            56777777622211222 2333335556554     788999999999999999643 22 1111011112233558999


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhchh
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESLNC  183 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~~~  183 (284)
                      +||  |-|+| -.-|.+++++++++.+..
T Consensus       218 ~~SgdKllgG-PqaGii~GkKelI~~lq~  245 (395)
T COG1921         218 SFSGDKLLGG-PQAGIIVGKKELIEKLQS  245 (395)
T ss_pred             EEecchhcCC-CccceEechHHHHHHHHh
Confidence            997  88875 345888899999988765

>KOG0628|consensus

Probab=94.80  E-value=0.81  Score=42.88  Aligned_cols=63  Identities=14%  Similarity=0.055  Sum_probs=43.1

Q ss_pred             EEEEecccHHHHHHHHHHHHC-CcEEeecCCCC-CEEEEEcCCC-CCHHHHHHHHHHHHHHHHHHh
Q psy11784        207 CLILLSITYYLYRYTRRMKEA-KIIVANEGEYG-NVLLFLPAMC-LTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       207 ~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~-~~lr~~p~l~-~t~~~id~~~~~l~~~l~~~~  269 (284)
                      .+.+.+++....++.+++-.. .|.+.+....+ -.||+....- .+++|+++.-+.+.+..+.+.
T Consensus       408 cFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~  473 (511)
T KOG0628|consen  408 CFRLKGDNEINEALLNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELF  473 (511)
T ss_pred             EEeecCCcHHHHHHHHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            344445667777888888765 56666654433 3678876444 367889999999988887753

>KOG1412|consensus

Probab=93.82  E-value=4.8  Score=36.15  Aligned_cols=154  Identities=15%  Similarity=0.185  Sum_probs=97.1

Q ss_pred             ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC---cccccccc---CCCCcEE--EecccccC-Cccee-
Q psy11784        100 FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS---HFWAFQTQ---GAVPDII--TVGKPMGN-GMPIG-  169 (284)
Q Consensus       100 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~---~~~a~~~~---g~~pDiv--~~sK~l~~-G~p~g-  169 (284)
                      ....|+ -|+++.+.+|.+.-++.+..-.+|-+|.|| -+|.   --|+..++   | .+=++  .|+|-+|- +-++| 
T Consensus       188 hNPTGm-DPT~EQW~qia~vik~k~lf~fFDiAYQGf-ASGD~~~DawAiR~fV~~g-~e~fv~QSFaKNfGlYneRvGn  264 (410)
T KOG1412|consen  188 HNPTGM-DPTREQWKQIADVIKSKNLFPFFDIAYQGF-ASGDLDADAWAIRYFVEQG-FELFVCQSFAKNFGLYNERVGN  264 (410)
T ss_pred             cCCCCC-CCCHHHHHHHHHHHHhcCceeeeehhhccc-ccCCccccHHHHHHHHhcC-CeEEEEhhhhhhcccccccccc
Confidence            444554 679999999999999999999999999999 4563   12555443   2 22234  37788762 22333 


Q ss_pred             --EEEecHHHHHhchh-----------------------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        170 --AVITSRKIAESLNC-----------------------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       170 --av~~~~~i~~~~~~-----------------------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                        .++-.+.++..+..                                         -.++.+++..|++.|..+     
T Consensus       265 ltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGt  344 (410)
T KOG1412|consen  265 LTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGT  344 (410)
T ss_pred             eEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence              33334444433322                                         126777777788887776     


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                             .|++.---+      ...-++.|. ++.|++.+.    ++|-++   ..+...++....+++++++.+.
T Consensus       345 WDHI~~QiGMFSyTGL------tp~qV~~li~~h~vyLl~~----GRInis---GLN~~NveyVAkAIde~Vr~~~  407 (410)
T KOG1412|consen  345 WDHITQQIGMFSYTGL------TPAQVDHLIENHKVYLLSD----GRINIS---GLNMKNVEYVAKAIDETVRAIK  407 (410)
T ss_pred             HHHHHhhccceeecCC------CHHHHHHHHHhceEEEecC----CcEeee---ccccccHHHHHHHHHHHHHhhc
Confidence                   444422222      233455566 468888753    345553   4566789999999999887763

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=92.21  E-value=3.2  Score=40.94  Aligned_cols=57  Identities=16%  Similarity=0.124  Sum_probs=38.5

Q ss_pred             HHHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHH---HHhCC--EEEEecccccCc
Q psy11784         77 AQAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI---HEIGG--VVIADEIQCGMG  137 (284)
Q Consensus        77 ~~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~---~~~g~--llI~DEv~tG~g  137 (284)
                      ++.|++.|++   .+..+.+|+.----.+.|.+-|    +++|.++|   +++|+  ++.+|=++.|+.
T Consensus       262 ~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~  326 (608)
T TIGR03811       262 INELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYG  326 (608)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchh
Confidence            6777777762   1222555554433334576666    88888888   77897  699999998864

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=91.75  E-value=11  Score=34.80  Aligned_cols=97  Identities=12%  Similarity=0.160  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh--CCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI--GGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+.+++.++   +++..|.+-=--|-.--...+-+-++++.++.|+.  ++++.+|..|.-|-.+      .+...+-.|
T Consensus       144 ~~~i~~~~~---~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~------~EP~~vGAD  214 (403)
T PF06838_consen  144 WEAIKKALK---PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVET------QEPTEVGAD  214 (403)
T ss_dssp             HHHHHHHHH---TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSS------S-GGGGT-S
T ss_pred             HHHHHHhhc---cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccc------cCccccchh
Confidence            567777776   45666654322222223344556677777777775  7999999887545211      123345678


Q ss_pred             EE--EecccccCCc-c-eeEEEecHHHHHhch
Q psy11784        155 II--TVGKPMGNGM-P-IGAVITSRKIAESLN  182 (284)
Q Consensus       155 iv--~~sK~l~~G~-p-~gav~~~~~i~~~~~  182 (284)
                      ++  .+-|-.|||+ | -|++++++++++...
T Consensus       215 l~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a  246 (403)
T PF06838_consen  215 LMAGSLIKNPGGGIAPTGGYIAGRKDLVERAA  246 (403)
T ss_dssp             EEEEETTSGGGTTT-SS-EEEEESHHHHHHHH
T ss_pred             heeccceeCCCCCccCcCCEEechHHHHHHHH
Confidence            87  5779999996 5 567888999988654

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=91.74  E-value=6.1  Score=36.09  Aligned_cols=112  Identities=15%  Similarity=0.100  Sum_probs=76.6

Q ss_pred             CcEEEec--ccccC-CcceeEEEecHHHHHhchh----------------------------------------------
Q psy11784        153 PDIITVG--KPMGN-GMPIGAVITSRKIAESLNC----------------------------------------------  183 (284)
Q Consensus       153 pDiv~~s--K~l~~-G~p~gav~~~~~i~~~~~~----------------------------------------------  183 (284)
                      -|++.+|  |-+|+ |  ++.++.++++.+....                                              
T Consensus       191 ~dviyagaQKnlGpaG--ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~  268 (365)
T COG1932         191 YDVIYAGAQKNLGPAG--LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEAL  268 (365)
T ss_pred             cceEEEehhhccCccc--eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            4677776  88885 6  8889999998876532                                              


Q ss_pred             hhhHHHHHHHHHHHHHhc-----------cCcee-EEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCH
Q psy11784        184 LDDNRPSGKYLVRPLGIN-----------LHIFW-CLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTT  251 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~-----------~G~~~-~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~  251 (284)
                      .++.+++.+.|-+.+.+-           +..|. .+.+ .+.+....|.+++.++|+..-.+....+-+|...=-+++.
T Consensus       269 ~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~-~~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~  347 (365)
T COG1932         269 EARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTL-VDAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPL  347 (365)
T ss_pred             HHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEc-CcHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCH
Confidence            125556666666666653           22232 2333 3556778899999999988765533334488877667889


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11784        252 ENVLFIVSTLNRIFTS  267 (284)
Q Consensus       252 ~~id~~~~~l~~~l~~  267 (284)
                      ++++.+++-++.+.++
T Consensus       348 e~veaL~~fm~~f~~~  363 (365)
T COG1932         348 EDVEALTDFMDWFEET  363 (365)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999998888877654

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=91.62  E-value=14  Score=35.93  Aligned_cols=80  Identities=20%  Similarity=0.286  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhcCCC-eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc-CccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDN-IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG-MGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~-vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG-~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+.+++.+.+++.. -.+||.-|-.  .|...-    +++|.+++.++++++..||++-- ++..+.  +.-....-..|
T Consensus       153 ~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah~~~~~~~~~--l~~~~~~~~~~  224 (557)
T COG1982         153 LETFKEALLAHPDAEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAHPAHFDFSPM--LPESALNGGAD  224 (557)
T ss_pred             HHHHHHHHHhChhhheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcCccccccccc--CcchhhhcCce
Confidence            45566666555555 7788888853  344444    89999999999999999999852 222221  11112223457


Q ss_pred             EEEec--ccccC
Q psy11784        155 IITVG--KPMGN  164 (284)
Q Consensus       155 iv~~s--K~l~~  164 (284)
                      ++|-|  |.+++
T Consensus       225 ~~tqS~HK~l~a  236 (557)
T COG1982         225 FVTQSTHKLLAA  236 (557)
T ss_pred             EEEechhhhhhh
Confidence            77766  76664

>KOG2467|consensus

Probab=90.63  E-value=3.8  Score=37.53  Aligned_cols=148  Identities=14%  Similarity=0.122  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcEEE--ecccccCCcceeEEE-ecHHH-----------
Q psy11784        113 LSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDIIT--VGKPMGNGMPIGAVI-TSRKI-----------  177 (284)
Q Consensus       113 l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDiv~--~sK~l~~G~p~gav~-~~~~i-----------  177 (284)
                      ..++|++|++.|+.|++|=+|- |+--.|....-++    ..||||  .-|+|-|  |-|+++ .++-+           
T Consensus       206 YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFe----y~DiVTTTTHKsLRG--PRg~mIFyRkGvk~~~~k~g~~i  279 (477)
T KOG2467|consen  206 YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFE----YCDIVTTTTHKSLRG--PRGAMIFYRKGVKSIKPKQGKEI  279 (477)
T ss_pred             HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccc----ccceeeccccccccC--CcceeEEEeccCCcCCCCCCCcc
Confidence            7899999999999999998874 4321221001112    247775  4588865  333333 23211           


Q ss_pred             -H---Hhchh---------------------------------hhhHHHHHHHHHHHHHhc---------cCceeEEEEe
Q psy11784        178 -A---ESLNC---------------------------------LDDNRPSGKYLVRPLGIN---------LHIFWCLILL  211 (284)
Q Consensus       178 -~---~~~~~---------------------------------l~~~~~~~~~l~~~L~~~---------~G~~~~i~~~  211 (284)
                       +   +.+..                                 .+++.++.+.|.+.|.+.         ...++-+++.
T Consensus       280 ~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr  359 (477)
T KOG2467|consen  280 LYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLR  359 (477)
T ss_pred             eechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEEEecc
Confidence             0   11110                                 236777888888888775         2234555554


Q ss_pred             cc---cHHHHHHHHHH---HHCCcEEeec-CCCCCEEEEEcCCCC----CHHHHHHHHHHHHHHHH
Q psy11784        212 SI---TYYLYRYTRRM---KEAKIIVANE-GEYGNVLLFLPAMCL----TTENVLFIVSTLNRIFT  266 (284)
Q Consensus       212 ~~---~~~~~~~~~~l---~~~Gv~~~~~-~~~~~~lr~~p~l~~----t~~~id~~~~~l~~~l~  266 (284)
                      +.   ......+++.+   .++.-+..-. .-.++-||+-.|...    .++|.++..+-|+++++
T Consensus       360 ~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  360 PKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             ccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence            32   23344444433   2322221110 112356788766554    57888888888877764

>KOG1383|consensus

Probab=89.68  E-value=19  Score=34.13  Aligned_cols=87  Identities=10%  Similarity=0.107  Sum_probs=56.1

Q ss_pred             hhhHHHHHHHHHHHHHhccCce------eEEEEe-cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHH-HH
Q psy11784        184 LDDNRPSGKYLVRPLGINLHIF------WCLILL-SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTEN-VL  255 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~~G~~------~~i~~~-~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~-id  255 (284)
                      .++..+....|++++++..++.      +++... .......++...|.+.|-++..- .++..+-++....+..++ .|
T Consensus       356 ~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~~i~elsd~l~~~GW~lnal-q~P~a~Hi~vt~~~~~~~~A~  434 (491)
T KOG1383|consen  356 TQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDVNIFELSDLLRKKGWILNAL-QFPAAIHICVTRVHAREDVAD  434 (491)
T ss_pred             HHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCccchhhhhHHHHhcCcCcccc-CCCCceEEEEEeeeccHHHHH
Confidence            4577788889999999873332      233222 22234567888999999887532 233344444445555555 68


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy11784        256 FIVSTLNRIFTSLQMD  271 (284)
Q Consensus       256 ~~~~~l~~~l~~~~~~  271 (284)
                      +++.-+++++.++...
T Consensus       435 ~~v~Di~~~~~el~~~  450 (491)
T KOG1383|consen  435 RFVADIRKVVEELKSL  450 (491)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            8888999999888643

>KOG1411|consensus

Probab=80.37  E-value=18  Score=33.05  Aligned_cols=46  Identities=22%  Similarity=0.214  Sum_probs=36.2

Q ss_pred             EEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC
Q psy11784         94 LICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS  141 (284)
Q Consensus        94 vi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~  141 (284)
                      |++-.. ....| +-|+.+.+++|+++-++.+.+-++|=++.|| -+|.
T Consensus       201 ilLhaCaHNPTG-vDPt~eqw~ki~~~~~~k~~~pffDmAYQGf-aSG~  247 (427)
T KOG1411|consen  201 ILLHACAHNPTG-VDPTKEQWEKISDLIKEKNLLPFFDMAYQGF-ASGD  247 (427)
T ss_pred             EEeehhhcCCCC-CCccHHHHHHHHHHhhhccccchhhhhhccc-ccCC
Confidence            444433 33445 4679999999999999999999999999999 4665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	284
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		9e-20
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		9e-20
3q8n_A	453	Crystal Structure Of 4-Aminobutyrate Transaminase F		3e-19
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		4e-17
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		2e-16
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		4e-16
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		4e-16
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		4e-16
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		4e-16
3r4t_A	467	Crystal Structure Of 4-Aminobutyrate Aminotransfera		9e-15
2pb0_A	420	Structure Of Biosynthetic N-Acetylornithine Aminotr		1e-13
2epj_A	434	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		4e-13
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		2e-12
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		2e-12
2e7u_A	424	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		3e-12
2gsa_A	432	Crystal Structure Of Glutamate-1-Semialdehyde Amino		3e-12
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		5e-12
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		6e-12
3l44_A	434	Crystal Structure Of Bacillus Anthracis Heml-1, Glu		6e-12
3fqa_A	427	Gabaculien Complex Of Gabaculine Resistant Gsam Ver		7e-12
3fq7_A	427	Gabaculine Complex Of Gsam Length = 427		7e-12
2hoy_A	432	Inter-Subunit Signaling In Gsam Length = 432		7e-12
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		7e-12
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		8e-12
4e77_A	429	2.0a Crystal Structure Of A Glutamate-1-Semialdehyd		8e-12
3k28_A	429	Crystal Structure Of A Glutamate-1-Semialdehyde Ami		1e-11
3fq8_A	427	M248i Mutant Of Gsam Length = 427		1e-11
2e54_A	385	Crystal Structure Of Acetylornithine Aminotransfera		2e-11
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		2e-11
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		3e-11
3bs8_A	438	Crystal Structure Of Glutamate 1-Semialdehyde Amino		8e-11
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		9e-11
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		1e-10
2ord_A	397	Crystal Structure Of Acetylornithine Aminotransfera		1e-10
4a6r_A	459	Crystal Structure Of The Omega Transaminase From Ch		1e-10
3i4j_A	430	Crystal Structure Of Aminotransferase, Class Iii Fr		1e-10
2cfb_A	411	Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm		2e-10
1qj3_A	429	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		3e-10
1mgv_A	429	Crystal Structure Of The R391a Mutant Of 7,8-Diamin		4e-10
3a8u_X	449	Crystal Structure Of Omega-Amino Acid:pyruvate Amin		7e-10
1dty_A	429	Crystal Structure Of Adenosylmethionine-8-Amino-7-O		8e-10
4ao9_A	454	Biochemical Properties And Crystal Structure Of A N		1e-09
1s08_A	429	Crystal Structure Of The D147n Mutant Of 7,8- Diami		2e-09
1s0a_A	429	Crystal Structure Of The Y17f Mutant Of 7,8- Diamin		2e-09
1s07_A	429	Crystal Structure Of The R253a Mutant Of 7,8-Diamin		3e-09
1s09_A	429	Crystal Structure Of The Y144f Mutant Of 7,8- Diami		4e-09
1s06_A	429	Crystal Structure Of The R253k Mutant Of 7,8- Diami		4e-09
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		5e-09
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		1e-08
3nui_A	478	Crystal Structure Of Omega-Transferase From Vibrio		2e-08
3i5t_A	476	Crystal Structure Of Aminotransferase Prk07036 From		2e-08
3du4_A	448	Crystal Structure Of 7-Keto-8-Aminopelargonic Acid		2e-08
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		3e-08
3dod_A	448	Crystal Structure Of Plp Bound 7,8-diaminopelargoni		3e-08
4e3r_A	473	Plp-Bound Aminotransferase Mutant Crystal Structure		9e-08
4e3q_A	473	Pmp-Bound Form Of Aminotransferase Crystal Structur		9e-08
2yku_A	465	Structural Determinants Of The Beta-Selectivity Of		1e-07
2byl_A	439	Structure Of Ornithine Aminotransferase Triple Muta		2e-07
2byj_A	439	Ornithine Aminotransferase Mutant Y85i Length = 439		2e-07
1oat_A	439	Ornithine Aminotransferase Length = 439		2e-07
2can_A	402	Human Ornithine Aminotransferase Complexed With L-C		2e-07
4grx_A	465	Structure Of An Omega-Aminotransferase From Paracoc		4e-07
3ruy_A	392	Crystal Structure Of The Ornithine-Oxo Acid Transam		1e-06
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		2e-06
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		2e-06
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		5e-06
3lv2_A	462	Crystal Structure Of Mycobacterium Tuberculosis 7,8		5e-06
3bv0_A	437	Crystal Structure Of Plp Bound 7,8-Diaminopelargoni		6e-06
3tft_A	457	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		6e-06
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		8e-06
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		8e-06
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		8e-06
2cy8_A	453	Crystal Structure Of D-Phenylglycine Aminotransfera		2e-05
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		6e-05

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 8/179 (4%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWV-HVIPFPD 59
           +EA + A+++AR  TGR  +V  D AYHG  NL + ++ +A    +   P+   V   P 
Sbjct: 135 AEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPM 194
Query: 60  TYRGEFSADDPQ-AAQKYAQAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLSLM 116
           +Y   F  ++P+    + A+ A  ++E     D +A +I EP+    G +VP  G+L  +
Sbjct: 195 SY--PFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPAL 252
Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSR 175
            ++  E G V IADE+Q G  R+G  F A   +G VPDIIT+ K +  G+P+ A IT R
Sbjct: 253 SEWAKEKGIVFIADEVQSGFCRTGEWF-AVDHEGVVPDIITMAKGIAGGLPLSA-ITGR 309

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 12/187 (6%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA + A+++AR  TGR  +V  D AYHG  NL + ++ ++    S+  P+      P+ 
Sbjct: 135 AEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFA-----PEV 189
Query: 61  YRGEFS---ADDPQ-AAQKYAQAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLS 114
           YR   S    D+P    ++ A+ A + +E      ++A +I EP+    G +VP PG+L+
Sbjct: 190 YRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLA 249
Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITS 174
            +  +  E G V IADE+Q G  R+G+ F A + +G VPDI+T+   +  GMP+ AV   
Sbjct: 250 TLTAWASENGVVFIADEVQTGFARTGAWF-ASEHEGIVPDIVTMAXGIAGGMPLSAVTGR 308
Query: 175 RKIAESL 181
            ++ +++
Sbjct: 309 AELMDAV 315

>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 15/184 (8%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVI-PFP- 58
           +EA + A+++ARAYT RQ +VV D AYHG  NL +        ++++ +P+ H   PF  
Sbjct: 139 AEAVENAVKIARAYTRRQAVVVFDHAYHGRTNLTM-------AMTAKNQPYKHGFGPFAN 191
Query: 59  DTYRGEFS---ADDPQAAQKYAQAARNIM--EAHRDNIATLICEPVFVVHGAVVPPPGWL 113
           + YR   S    D        A  A +++  +   DN+A ++ EPV    G VVP PG+L
Sbjct: 192 EVYRVPTSYPFRDGETDGAAAAAHALDLINKQVGADNVAAVVIEPVHGEGGFVVPAPGFL 251
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
             +  +  + G V +ADE+Q G  R+G+ F A + +  VPD+I   K +  G+P+ AV  
Sbjct: 252 GALQKWCTDNGAVFVADEVQTGFARTGALF-ACEHENVVPDLIVTAKGIAGGLPLSAVTG 310
Query: 174 SRKI 177
             +I
Sbjct: 311 RAEI 314

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVI----- 55
           SEA + A+++AR++T +  +V  D AYHG  NL + ++ +         P+   I     
Sbjct: 132 SEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPL 191
Query: 56  --PFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
             PF D   G+  A D + A K A    +  +   DN+A ++ EP+    G +VP  G+L
Sbjct: 192 SYPFRDAEFGKELATDGELAAKRAITVID-KQIGADNLAAVVIEPIQGEGGFIVPADGFL 250
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
             + D+  +   V IADE+Q G  R+G+ F A + +G  PD+I     +  G+P+ AV  
Sbjct: 251 PTLLDWCRKNDVVFIADEVQTGFARTGAMF-ACEHEGIDPDLIVTAXGIAGGLPLSAVTG 309
Query: 174 SRKIAES 180
             +I +S
Sbjct: 310 RAEIMDS 316

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 31/187 (16%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW------VHV 54
           +EAN+ AL+ ARA+TGR+  V     + G     L ++         ++P+      V  
Sbjct: 114 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVT----WEPKYREPFLPLVEPVEF 169
Query: 55  IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLS 114
           IP+ D    + + D+  AA                    +I EPV    G     P +L 
Sbjct: 170 IPYNDVEALKRAVDEETAA--------------------VILEPVQGEGGVRPATPEFLR 209
Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITS 174
              +   E G ++I DEIQ GMGR+G  F AF+  G VPDI+T+ K +G G+P+G  +  
Sbjct: 210 AAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPDILTLAKALGGGVPLGVAVMR 268
Query: 175 RKIAESL 181
            ++A S+
Sbjct: 269 EEVARSM 275

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKP------WVHV 54
           +E+N+ A+++A+  TG+  IV    ++HG        +  +   S+ +K           
Sbjct: 110 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTG-----AAASATYSAGRKGVGPAAVGSFA 164
Query: 55  IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWL 113
           IP P TYR  F  +           A ++++     N+A  I EP+    G +  P G++
Sbjct: 165 IPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYM 224
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
           + +       G ++I DE Q G+GR+G+ F A Q  G  PDI+T+ K +G G+P+ A++T
Sbjct: 225 AALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPDILTLSKTLGAGLPLAAIVT 283
Query: 174 SRKIAE 179
           S  I E
Sbjct: 284 SAAIEE 289

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKP------WVHV 54
           +E+N+ A+++A+  TG+  IV    ++HG        +  +   S+ +K           
Sbjct: 112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTG-----AAASATYSAGRKGVGPAAVGSFA 166
Query: 55  IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWL 113
           IP P TYR  F  +           A ++++     N+A  I EP+    G +  P G++
Sbjct: 167 IPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYM 226
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
           + +       G ++I DE Q G+GR+G+ F A Q  G  PDI+T+ K +G G+P+ A++T
Sbjct: 227 AALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPDILTLSKTLGAGLPLAAIVT 285
Query: 174 SRKIAE 179
           S  I E
Sbjct: 286 SAAIEE 291

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKP------WVHV 54
           +E+N+ A+++A+  TG+  IV    ++HG        +  +   S+ +K           
Sbjct: 112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTG-----AAASATYSAGRKGVGPAAVGSFA 166
Query: 55  IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWL 113
           IP P TYR  F  +           A ++++     N+A  I EP+    G +  P G++
Sbjct: 167 IPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYM 226
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
           + +       G ++I DE Q G+GR+G+ F A Q  G  PDI+T+ K +G G+P+ A++T
Sbjct: 227 AALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPDILTLSKTLGAGLPLAAIVT 285
Query: 174 SRKIAE 179
           S  I E
Sbjct: 286 SAAIEE 291

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKP------WVHV 54
           +E+N+ A+++A+  TG+  IV    ++HG        +  +   S+ +K           
Sbjct: 111 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTG-----AAASATYSAGRKGVGPAAVGSFA 165
Query: 55  IPFPDTYRGEF---SADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
           IP P TYR  F    A D  A   YA     I      N+A  I EP+    G +  P G
Sbjct: 166 IPAPFTYRPRFERNGAYDYLAELDYAFDL--IDRQSSGNLAAFIAEPILSSGGIIELPDG 223
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
           +++ +       G ++I DE Q G+GR+G+ F A Q  G  PDI+T+ K +G G+P+ A+
Sbjct: 224 YMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPDILTLSKTLGAGLPLAAI 282
Query: 172 ITSRKIAE 179
           +TS  I E
Sbjct: 283 VTSAAIEE 290

>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 7/186 (3%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW---VHVIPF 57
           +EA + ++++ARA+T +Q +V  D AYHG  NL + ++ ++    S   P+   ++  P 
Sbjct: 149 AEAVENSIKVARAHTRKQAVVAFDYAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPV 208
Query: 58  PDTYRGEF-SADDPQAAQKYAQAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLS 114
              YR      D     +  A+ A N+++      N+A +I EP+    G +VP  G+L 
Sbjct: 209 SYPYRDNLLDKDIATDGELAAERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLP 268
Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITS 174
            +  +  +   V IADE+Q G  R+G+ F A   +   PD+I     + +G P+ AV   
Sbjct: 269 ALQRWCRDNDVVFIADEVQTGFARTGAMF-ACDHENVEPDLIVTAXGIADGFPLSAVTGR 327
Query: 175 RKIAES 180
            +I ++
Sbjct: 328 AEIMDA 333

>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 31/191 (16%)
Query: 1   SEANDLALQLARAYTG------RQNIVVVDAAYHGTVNLLLDISPR-AFMLSSEKKPW-- 51
           +EAN+ A +LAR Y        +  I+    A+HG     + +  +  +      KP   
Sbjct: 124 TEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADI 183
Query: 52  VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
           +HV PF D +                 A + +M+   D+   ++ EP+    G     P 
Sbjct: 184 IHV-PFNDLH-----------------AVKAVMD---DHTCAVVVEPIQGEGGVQAATPE 222
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
           +L  + D   E   +++ DE+QCGMGR+G  F A+   G  PDI+T  K +G G P+ A+
Sbjct: 223 FLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDILTSAKALGGGFPVSAM 281
Query: 172 ITSRKIAESLN 182
           +T+++IA + +
Sbjct: 282 LTTQEIASAFH 292

>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA   A++LAR YTGR  I+  D  YHG+ +        A ++++      + +P    
Sbjct: 122 TEATMTAIRLARGYTGRDLILKFDGCYHGSHD--------AVLVAAGSAAAHYGVP---- 169
Query: 61  YRGEFSADDPQAAQKYA--------QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                SA  P+A  +          +A   +   + D IA +I EPV    G + P   +
Sbjct: 170 ----TSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREF 225
Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
           L+ +     E G ++I DE+  G  +G  G+  + F  +G   DII +GK +G G P+GA
Sbjct: 226 LAALQRLSRESGALLILDEVVTGFRLGLEGAQGY-FNIEG---DIIVLGKIIGGGFPVGA 281
Query: 171 VITSRKIAESLNCLDDNRPSGK 192
           V  SR++   L       P GK
Sbjct: 282 VAGSREVMSLLT------PQGK 297

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 6/183 (3%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           S+AN+ A +     TGR  ++    AYHG     +  S  +    + K   + ++P+PD 
Sbjct: 114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDP 173
Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
           YR     +DP            +      +I     EP+    G +VPP G+L    D  
Sbjct: 174 YRP--YRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC 231
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAES 180
              G +V+ DE++ G+ RSG     F+ +G VPDI+ +GK +G G+P+ AVI     AE 
Sbjct: 232 RAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAP---AEI 287
Query: 181 LNC 183
           L+C
Sbjct: 288 LDC 290

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 6/183 (3%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           S+AN+ A +     TGR  ++    AYHG     +  S  +    + K   + ++P+PD 
Sbjct: 127 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDP 186
Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
           YR     +DP            +      +I     EP+    G +VPP G+L    D  
Sbjct: 187 YRP--YRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC 244
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAES 180
              G +V+ DE++ G+ RSG     F+ +G VPDI+ +GK +G G+P+ AVI     AE 
Sbjct: 245 RAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAP---AEI 300
Query: 181 LNC 183
           L+C
Sbjct: 301 LDC 303

>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVN-LLLDISPRAFMLSSEKKPWVHVIPFPD 59
           +EA   AL+LAR YTGR  IV     YHG  + LL++    A  L       V     P+
Sbjct: 118 TEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGV-----PE 172
Query: 60  TYRG---EFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLM 116
            Y         +DP+         R +++   + IA +I EPV    G +VP   +L  +
Sbjct: 173 EYAKLTLVLEYNDPEGL-------REVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKAL 225
Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRK 176
           ++     G ++IADE+  G     +   A +  G  PD++T+GK +G G+P  A    R+
Sbjct: 226 HE-AKAYGVLLIADEVMTGF--RLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRRE 282
Query: 177 IAESLNCLDDNRPSGKYLVRPLGI 200
           I E +  L     +G     PL +
Sbjct: 283 IMEKVAPLGPVYQAGTLSGNPLAM 306

>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA    L+L RAYTGR  I+  +  YHG  ++        F++ +        +P    
Sbjct: 123 TEACMAVLRLMRAYTGRDKIIKFEGCYHGHADM--------FLVKAGSGVATLGLPSSPG 174
Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
              + +A+         +A + +   +   IA +I EP+    G +VP  G+L  + +  
Sbjct: 175 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 234
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
            E   +++ DE+  G   +   +   Q + G  PD+ T+GK +G G+P+GA    R+I +
Sbjct: 235 LEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQ 291
Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLS-ITY-YLYRYTRRMKEAKIIVANE 234
            +        +G     PL +   I    +L    TY YL + T+R+ +  + +A E
Sbjct: 292 LVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 348

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW----VHVIP 56
           +EA + ++++ +  TGR+ I+     +HG     + ++    +  S   P+    +HV P
Sbjct: 114 TEAIEASIKVVKN-TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHV-P 171
Query: 57  FPDTYRGEFSADDPQAAQKYAQAARNIMEAH-------RDNIATLICEPVFVVHGAVVPP 109
           +P+ YR  +  +  +   +        +E +        + +A +  EP+    G V+PP
Sbjct: 172 YPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPP 231
Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPI 168
             + + +     + G +++ DE+Q G+GR+G  F A +    VPD+IT+ K +G G MPI
Sbjct: 232 KNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLF-AIENFNTVPDVITLAKALGGGIMPI 290
Query: 169 GAVITSRKI 177
           GA I  + +
Sbjct: 291 GATIFRKDL 299

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 12/201 (5%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK---PWVHVIPF 57
           SEA + A+++ARA T R   +    AYHG  +  L ++ +    S+        V+   +
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY 171
Query: 58  PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
           P    G  S DD  A     +  +N  +A  ++IA ++ EPV    G     P ++  + 
Sbjct: 172 PCPLHG-ISEDD--AIASIHRIFKN--DAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLR 226
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
               E G ++IADE+Q G GR+G+ F A +  G  PD+ T  K +  G P+ A +T R  
Sbjct: 227 ALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIAGGFPL-AGVTGR-- 282
Query: 178 AESLNCLDDNRPSGKYLVRPL 198
           AE ++ +      G Y   P+
Sbjct: 283 AEVMDAVAPGGLGGTYAGNPI 303

>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA    +++ARAYTGR  I      YHG  +L+L                V     P T
Sbjct: 121 TEAVXTTIRVARAYTGRTKIXKFAGCYHGHSDLVL----------------VAAGSGPST 164
Query: 61  YRGEFSADDPQA-AQKYAQAARNIMEAHRD-------NIATLICEPVFVVHGAVVPPPGW 112
                SA  PQ+ AQ+      N +E  ++        +A ++ EP+    G V P PG+
Sbjct: 165 LGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGF 224
Query: 113 LSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVI 172
           L  + + +HE G +VI DE+         +  A    G  PD+  +G  +G G+PIGA  
Sbjct: 225 LEKVNELVHEAGALVIYDEVITAF--RFXYGGAQDLLGVTPDLTALGXVIGGGLPIGAYG 282
Query: 173 TSRKIAESLNCLDDNRPSGKYLVRP 197
             ++I E +  L     +G     P
Sbjct: 283 GKKEIXEQVAPLGPAYQAGTXAGNP 307

>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA    L+L RAYTGR  I+  +  YHG  ++        F++ +        +P    
Sbjct: 118 TEACMAVLRLMRAYTGRDKIIKFEGCYHGHADM--------FLVKAGSGVATLGLPSSPG 169
Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
              + +A+         +A + +   +   IA +I EP+    G +VP  G+L  + +  
Sbjct: 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 229
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
            E   +++ DE+  G   +   +   Q + G  PD+ T+GK +G G+P+GA    R+I +
Sbjct: 230 LEHDALLVFDEVITGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQ 286
Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLS-ITY-YLYRYTRRMKEAKIIVANE 234
            +        +G     PL +   I    +L    TY YL + T+R+ +  + +A E
Sbjct: 287 LVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 343

>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA    L++ RAYTGR  I+  +  YHG  ++        F++ +        +P    
Sbjct: 118 TEACMAVLRIMRAYTGRDKIIKFEGCYHGHADM--------FLVKAGSGVATLGLPSSPG 169
Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
              + +A+         +A + +   +   IA +I EP+    G +VP  G+L  + +  
Sbjct: 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 229
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
            E   +++ DE+  G   +   +   Q + G  PD+ T+GK +G G+P+GA    R+I +
Sbjct: 230 LEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQ 286
Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLS-ITY-YLYRYTRRMKEAKIIVANE 234
            +        +G     PL +   I    +L    TY YL + T+R+ +  + +A E
Sbjct: 287 LVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 343

>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA    L++ RAYTGR  I+  +  YHG  ++        F++ +        +P    
Sbjct: 123 TEACMAVLRIMRAYTGRDKIIKFEGCYHGHADM--------FLVKAGSGVATLGLPSSPG 174
Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
              + +A+         +A + +   +   IA +I EP+    G +VP  G+L  + +  
Sbjct: 175 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 234
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
            E   +++ DE+  G   +   +   Q + G  PD+ T+GK +G G+P+GA    R+I +
Sbjct: 235 LEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQ 291
Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLS-ITY-YLYRYTRRMKEAKIIVANE 234
            +        +G     PL +   I    +L    TY YL + T+R+ +  + +A E
Sbjct: 292 LVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 348

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 12/201 (5%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK---PWVHVIPF 57
           SEA + A+++ARA T R   +    AYHG  +  L ++ +    S+        V+   +
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY 171
Query: 58  PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
           P    G  S DD  A     +  +N  +A  ++IA ++ EPV    G     P ++  + 
Sbjct: 172 PCPLHG-ISEDD--AIASIHRIFKN--DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLR 226
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
               E G ++IADE+Q G GR+G+ F A +  G  PD+ T  K +  G P+ A +T R  
Sbjct: 227 ALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIAGGFPL-AGVTGR-- 282
Query: 178 AESLNCLDDNRPSGKYLVRPL 198
           AE ++ +      G Y   P+
Sbjct: 283 AEVMDAVAPGGLGGTYAGNPI 303

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 12/201 (5%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK---PWVHVIPF 57
           SEA + A+++ARA T R   +    AYHG  +  L ++ +    S+        V+   +
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY 171
Query: 58  PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
           P    G  S DD  A     +  +N  +A  ++IA ++ EPV    G     P ++  + 
Sbjct: 172 PCPLHG-ISEDD--AIASIHRIFKN--DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLR 226
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
               E G ++IADE+Q G GR+G+ F A +  G  PD+ T  K +  G P+ A +T R  
Sbjct: 227 ALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIAGGFPL-AGVTGR-- 282
Query: 178 AESLNCLDDNRPSGKYLVRPL 198
           AE ++ +      G Y   P+
Sbjct: 283 AEVMDAVAPGGLGGTYAGNPI 303

>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVN-LLLDISPRAFMLSSEKKPWVHVIPFPD 59
           +EA   A++LAR YTGR  I+  +  YHG  + LL+     A  L     P V       
Sbjct: 119 TEATXSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPT----- 173
Query: 60  TYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDY 119
               +F+            + R   E +   +A +I EPV      + P P +L  +   
Sbjct: 174 ----DFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNXNCIPPLPEFLPGLRAL 229
Query: 120 IHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
             E G ++I DE+  G  +  +G+  +       +PD+  +GK +G G P+GA    R++
Sbjct: 230 CDEFGALLIIDEVXTGFRVALAGAQDYYH----VIPDLTCLGKIIGGGXPVGAFGGRREV 285
Query: 178 AESL 181
             +L
Sbjct: 286 XNAL 289

>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 32/181 (17%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA   AL+LAR YTGR  I+     YHG  + LL           +    V  +  PD 
Sbjct: 119 TEATXSALRLARGYTGRNKILKFIGCYHGHGDSLL----------IKAGSGVATLGLPD- 167
Query: 61  YRGEFSADDPQAAQKYA--------QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                S   P+   K          ++ +   E   D+IA +I EPV    G V P PG+
Sbjct: 168 -----SPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNXGVVPPQPGF 222
Query: 113 LSLMYDYIHEIGGVVIADEIQCGMG---RSGSHFWAFQTQGAVPDIITVGKPMGNGMPIG 169
           L  + +   + G ++I DE+  G       G  ++     G  PD+  +GK +G G+P+G
Sbjct: 223 LEGLREVTEQNGALLIFDEVXTGFRVAYNCGQGYY-----GVTPDLTCLGKVIGGGLPVG 277
Query: 170 A 170
           A
Sbjct: 278 A 278

>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA    L++ RAYTGR  I+  +  YHG  ++        F++ +        +P    
Sbjct: 118 TEACMAVLRIMRAYTGRDKIIKFEGCYHGHADM--------FLVKAGSGVATLGLPSSPG 169
Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
              + +A+         +A + +   +   IA +I EP+    G +VP  G+L  + +  
Sbjct: 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 229
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
            E   +++ DE+  G   +   +   Q + G  PD+ T+GK +G G+P+GA    R+I +
Sbjct: 230 LEHDALLVFDEVITGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQ 286
Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLS-ITY-YLYRYTRRMKEAKIIVANE 234
            +        +G     PL +   I    +L    TY YL + T+R+ +  + +A E
Sbjct: 287 LVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 343

>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 41/249 (16%)
Query: 1   SEANDLALQLARAYTGRQ-----NIVVVDAAYHGTV--NLLLDISPRAFMLSSEKKPWVH 53
           +EAN+ A+++AR Y  ++      I+    ++HG    +L     P+       +KP+  
Sbjct: 95  TEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKY------QKPFEP 148
Query: 54  VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
           ++P  + +  EF+               ++     +++  +  EP+    G V     +L
Sbjct: 149 LVPGFEYF--EFNN------------VEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFL 194
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
                   E   +++ DE+QCGMGR+G  F A+Q  G VPD++T  K +G G+PIGAVI 
Sbjct: 195 EEARKLCDEYDALLVFDEVQCGMGRTGKLF-AYQKYGVVPDVLTTAKGLGGGVPIGAVI- 252
Query: 174 SRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITY---------YLYRYTRRM 224
              + E  N L+       +   PL     +     L    +         YL +  + M
Sbjct: 253 ---VNERANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEM 309
Query: 225 KEAKIIVAN 233
           KE   +VA+
Sbjct: 310 KEEYDVVAD 318

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 12/201 (5%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK---PWVHVIPF 57
           SEA + A+++ARA T R   +    AYHG  +  L ++ +    S+        V+   +
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY 171
Query: 58  PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
           P    G  S DD  A     +  +N  +A  ++IA ++ EPV    G     P ++  + 
Sbjct: 172 PCPLHG-ISEDD--AIASIHRIFKN--DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLR 226
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI 177
               E G ++IADE Q G GR+G+ F A +  G  PD+ T  K +  G P+ A +T R  
Sbjct: 227 ALCDEHGIMLIADEAQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIAGGFPL-AGVTGR-- 282
Query: 178 AESLNCLDDNRPSGKYLVRPL 198
           AE ++ +      G Y   P+
Sbjct: 283 AEVMDAVAPGGLGGTYAGNPI 303

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 31/187 (16%)
Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHV 54
           +EAN+ AL+LAR +      + +  IV    A+HG            F +S+  +P    
Sbjct: 106 AEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRT---------LFTVSAGGQP---- 152
Query: 55  IPFPDTYRGEFS---ADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
                 Y  +F+   AD   AA     +A  +++   D+   +I EP+    G V     
Sbjct: 153 -----AYSQDFAPLPADIRHAAYNDINSASALID---DSTCAVIVEPIQGEGGVVPASNA 204
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
           +L  + +  +    ++I DE+Q G+GR+G   +A+   G  PD++T  K +G G P+GA+
Sbjct: 205 FLQGLRELCNRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPDLLTTAKALGGGFPVGAL 263
Query: 172 ITSRKIA 178
           + + + A
Sbjct: 264 LATEECA 270

>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 26/189 (13%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA   AL+LAR YTGR  I+  +  YHG  + LL           +    V  +  PD 
Sbjct: 127 TEATMSALRLARGYTGRNKILKFEGCYHGHGDSLL----------IKAGSGVATLGLPD- 175
Query: 61  YRGEFSADDPQAAQKYA--------QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                S   P+   K          ++ +   +   ++IA +I EPV    G V P  G+
Sbjct: 176 -----SPGVPEGIAKNTITVPYNDLESVKLAFQQFGEDIAGVIVEPVAGNMGVVPPQEGF 230
Query: 113 LSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVI 172
           L  + D   + G ++I DE+  G      +  A    G  PD+  +GK +G G+P+GA  
Sbjct: 231 LQGLRDITEQYGSLLIFDEVMTGF--RVDYNCAQGYFGVTPDLTCLGKVIGGGLPVGAYG 288
Query: 173 TSRKIAESL 181
              +I E +
Sbjct: 289 GKAEIMEQI 297

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 12/188 (6%)
Query: 1   SEANDLALQLARAYTGRQN------IVVVDAAYHGTVNLLLDISPRAFM-LSSEKKPWVH 53
           SEAND  +++ R Y   +       I+    AYHG+      +   A M   S   P VH
Sbjct: 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVH 185
Query: 54  VIPFPDTYRGEFSADDPQ--AAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
            I  P+ +  E    DP+     +  +    I+E   + +A  I EPV    G +V P  
Sbjct: 186 HINQPNWW-AEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDS 244
Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGA 170
           +   +     +   ++IADE+ CG GR+G+ F   QT G  P I+T+ K + +G  PIG 
Sbjct: 245 YWPEIQRICDKYDILLIADEVICGFGRTGNWF-GTQTMGIRPHIMTIAKGLSSGYAPIGG 303
Query: 171 VITSRKIA 178
            I   ++A
Sbjct: 304 SIVCDEVA 311

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 25/199 (12%)
Query: 1   SEANDLALQLARAYTG------RQNIVVVDAAYHGTVNLLLDI---SPRAFMLSSEKKPW 51
           SEAN+ A ++AR Y        R         YHG           + R +        +
Sbjct: 117 SEANETAFKIARQYYAQKGEPHRYKFXSRYRGYHGNTXATXAATGQAQRRYQYEPFASGF 176
Query: 52  VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR-------DNIATLICEPVFVVHG 104
           +HV P PD YR       P   ++       + E  R       + IA  I EP+    G
Sbjct: 177 LHVTP-PDCYR------XPGIERENIYDVECVKEVDRVXTWELSETIAAFIXEPIITGGG 229
Query: 105 AVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGN 164
            +  P  +   +++   + G ++I+DE+ CG GR+G  F  F      PDIIT  K + +
Sbjct: 230 ILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAF-GFXNYDVKPDIITXAKGITS 288
Query: 165 G-MPIGAVITSRKIAESLN 182
             +P+ A    R+I E+  
Sbjct: 289 AYLPLSATAVKREIYEAFK 307

>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 28/183 (15%)
Query: 1   SEANDLALQLARAYTGRQ-----NIVVVDAAYHGTV--NLLLDISPRAFMLSSEKKPWVH 53
           +EAN+ A+++AR Y  ++      I+    ++HG    +L     P+       +KP+  
Sbjct: 107 TEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKY------QKPFEP 160
Query: 54  VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
           ++P  + +  EF+               ++     +++  +  EP+    G V     +L
Sbjct: 161 LVPGFEYF--EFNN------------VEDLRRKXSEDVCAVFLEPIQGESGIVPATKEFL 206
Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
                   E   +++ DE+QCG GR+G  F A+Q  G VPD++T  K +G G+PIGAVI 
Sbjct: 207 EEARKLCDEYDALLVFDEVQCGXGRTGKLF-AYQKYGVVPDVLTTAKGLGGGVPIGAVIV 265
Query: 174 SRK 176
           + +
Sbjct: 266 NER 268

>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 82  NIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS 141
            I+E   D +A  + EP+    G +VPP  +   +     +   +++ADE+ CG GR+G 
Sbjct: 211 KILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE 270
Query: 142 HFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIAESL 181
            F   Q  G  PD+ T  K + +G +PIGAV   +++AE L
Sbjct: 271 WF-GHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGL 310

>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 24/195 (12%)
Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDIS---PRAFMLSSEKKP- 50
           SEA + A++LAR Y       GR  ++    +YHG     L  S    R  + +   +P 
Sbjct: 99  SEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPE 158
Query: 51  -WVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR-DNIATLICEPVF-VVHGAVV 107
            W   +P PD  R    A+D       A+  R ++E    + +A  + EPV      A+ 
Sbjct: 159 AWPK-LPKPDPARN--GAED-------AEGLRALLEREGPETVAAFMAEPVVGASDAALA 208
Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-M 166
           P PG+   + D   E G + IADE+  GMGR GS     +  G  PDI  +GK +  G  
Sbjct: 209 PAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYA 268
Query: 167 PIGAVITSRKIAESL 181
           P+  ++ + ++ E++
Sbjct: 269 PLAGLLAAPQVYETV 283

>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 16/238 (6%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA    L+L RAYT R+ ++  +  YHG  ++ L           +    V  +  PD+
Sbjct: 102 TEACMAVLRLMRAYTQREKVIKFEGCYHGHADMFL----------VKAGSGVATLGLPDS 151
Query: 61  YRGEFSADDPQAAQKYA--QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYD 118
                +         Y   +A   + E + ++IA +I EPV    G + P  G+L  + +
Sbjct: 152 PGVPKATTAATLTAPYNDLEAVSRLFEQYPNDIAGVILEPVVGNAGFIPPDAGFLEGLRE 211
Query: 119 YIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIA 178
              + G +++ DE+  G     ++  A +  G  PD+ T+GK +G G+P+GA     +I 
Sbjct: 212 LTKQYGALLVFDEVMTGF--RIAYGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRAEIM 269
Query: 179 ESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYY--LYRYTRRMKEAKIIVANE 234
           + +        +G     PL +   I    IL     Y  L R T ++ +  +  A E
Sbjct: 270 KMVAPAGPVYQAGTLSGNPLAMTAGIKTLEILSRPGSYEHLDRITGKLVQGLLDAARE 327

>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 23/208 (11%)
Query: 1   SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
           S A ++A+++A  Y       RQ  +     YHG T   +    P   M S  K   P  
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53  HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
              P P +   GE+   D     +       +M AHR  IA +I EP+    G + +  P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
            WL  +       G ++IADEI  G GR+G  F A +     PDI+ +GK + G  M + 
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
           A +T+R++AE+++    N  +G ++  P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308

>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 23/208 (11%)
Query: 1   SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
           S A ++A+++A  Y       RQ  +     YHG T   +    P   M S  K   P  
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53  HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
              P P +   GE+   D     +       +M AHR  IA +I EP+    G + +  P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
            WL  +       G ++IADEI  G GR+G  F A +     PDI+ +GK + G  M + 
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
           A +T+R++AE+++    N  +G ++  P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308

>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 82  NIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG 140
            ++E H   NIA +  EP+    G +VPP G+L    +  ++   +++ DE+  G GR+G
Sbjct: 210 KLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG 269
Query: 141 SHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIAESLNCLDDNRPSGKYLVR 196
           S F A  + G  PD++ + K + NG +P+GAVI S +I ++      N+P+ +Y V 
Sbjct: 270 SMFGA-DSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFM----NQPTPEYAVE 321

>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 82  NIMEAHRDNIATLICEPVFVVHGAV-VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG 140
            +M AHR  IA +I EP+    G + +  P WL  +       G ++IADEI  G GR+G
Sbjct: 196 RLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 141 SHFWAFQTQGAVPDIITVGKPM-GNGMPIGAVITSRKIAESLN 182
             F A +     PDI+ +GK + G  M + A +T+R++AE+++
Sbjct: 256 KLF-ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETIS 297

>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 25/170 (14%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EAN +AL  A  +TGR+ IVV    YHG V            L    +P    +PF   
Sbjct: 153 TEANLMALTAALHFTGRRKIVVFSGGYHGGV------------LGFGARPSPTTVPF--- 197
Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
                  D        AQ AR  +E H   IA ++ EP+    G +   P +L  + +  
Sbjct: 198 -------DFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESA 250
Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
            ++G +++ DE+     R   H  A    G   D+ T+GK +G GM  GA
Sbjct: 251 TQVGALLVFDEVMT--SRLAPHGLA-NKLGIRSDLTTLGKYIGGGMSFGA 297

>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 1   SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
           S A ++A+++A  Y       RQ  +     YHG T   +    P   M S  K   P  
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGNTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53  HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
              P P +   GE+   D     +       +M AHR  IA +I EP+    G + +  P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
            WL  +       G ++IADEI  G GR+G  F A +     PDI+ +G  + G  M + 
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
           A +T+R++AE+++    N  +G ++  P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308

>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 1   SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
           S A ++A+++A  Y       RQ  +     YHG T   +    P   M S  K   P  
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53  HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
              P P +   GE+   D     +       +M AHR  IA +I EP+    G + +  P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
            WL  +       G ++IADEI  G GR+G  F A +     PDI+ +G  + G  M + 
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
           A +T+R++AE+++    N  +G ++  P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308

>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 1   SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
           S A ++A+++A  Y       RQ  +     YHG T   +    P   M S  K   P  
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53  HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
              P P +   GE+   D     +       +M AHR  IA +I EP+    G + +  P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
            WL  +       G ++IADEI  G G +G  F A +     PDI+ +GK + G  M + 
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGATGKLF-ACEHAEIAPDILCLGKALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
           A +T+R++AE+++    N  +G ++  P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308

>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 82  NIMEAHRDNIATLICEPVFVVHGAV-VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG 140
            +M AHR  IA +I EP+    G + +  P WL  +       G ++IADEI  G GR+G
Sbjct: 196 RLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 141 SHFWAFQTQGAVPDIITVGKPM-GNGMPIGAVITSRKIAESLNCLDDNRPSGKYLVRP 197
             F A +     PDI+ +G  + G  M + A +T+R++AE+++    N  +G ++  P
Sbjct: 256 KLF-ACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETIS----NGEAGCFMHGP 308

>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 1   SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--PWV 52
           S A ++A+++A  Y       RQ  +     YHG T   +    P   M S  K   P  
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172
Query: 53  HVIPFPDT-YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPP 110
              P P +   GE+   D     +       +M AHR  IA +I EP+    G + +  P
Sbjct: 173 LFAPAPQSRMDGEWDERDMVGFAR-------LMAAHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM-GNGMPIG 169
            WL  +       G ++IADEI  G G++G  F A +     PDI+ +G  + G  M + 
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGKTGKLF-ACEHAEIAPDILCLGXALTGGTMTLS 284
Query: 170 AVITSRKIAESLNCLDDNRPSGKYLVRP 197
           A +T+R++AE+++    N  +G ++  P
Sbjct: 285 ATLTTREVAETIS----NGEAGCFMHGP 308

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 126 VVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLD 185
           ++IADEIQCG GRSG  F+A++    +PDI T  K +G G+ +GA + ++K+A   N L+
Sbjct: 215 LLIADEIQCGXGRSGK-FFAYEHAQILPDIXTSAKALGCGLSVGAFVINQKVAS--NSLE 271
Query: 186 DNRPSGKYLVRPL---GIN 201
                  Y   PL   G+N
Sbjct: 272 AGDHGSTYGGNPLVCAGVN 290

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 89  DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT 148
           +  A +I E +    G       +LS + +   E   ++I DE+Q G+GR+G  F+A+Q 
Sbjct: 171 EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQH 229
Query: 149 QGAVPDIITVGKPMGNGMPIGAVITSRKIAESL 181
               PD+I + K +G G+PIGA++   ++A+S 
Sbjct: 230 FNLKPDVIALAKGLGGGVPIGAILAREEVAQSF 262

>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 13/193 (6%)
Query: 1   SEANDLALQL------ARAYTGRQNIVVVDAAYHG--TVNLLLDISPRAFMLSSEKKPWV 52
           SEAND  +++      A     ++ I+    AYHG   V+  +   P   +       +V
Sbjct: 132 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFV 191
Query: 53  HVIPFPDTYR-GEFSADDPQAAQKYAQA-ARNIMEAHRDNIATLICEPVFVVHGAVVPPP 110
           H+   P  +R GE    + Q   + A+     I     D IA    EPV    G + P  
Sbjct: 192 HLT-CPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAK 250
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIG 169
           G+   +   + +    VI+DE+ CG GR+G+  W   T    PD I   K +  G  P+G
Sbjct: 251 GYFQAILPILRKYDIPVISDEVICGFGRTGNT-WGCVTYDFTPDAIISSKNLTAGFFPMG 309
Query: 170 AVITSRKIAESLN 182
           AVI   ++++ L 
Sbjct: 310 AVILGPELSKRLE 322

>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 35/199 (17%)
Query: 1   SEANDLALQLARAYTG------RQNIVVVDAAYHGTVNLLLDISPRA-----FMLSSEKK 49
           S A D AL+ +  Y        ++ I+V    YHG+  L    + R      F ++ ++ 
Sbjct: 124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDR- 182
Query: 50  PWVHVIPFPDTYRGEFSADDPQAAQKYAQAA----------RNIMEAHRDNIATLICEPV 99
                I F        S+ +P+ A   +Q A            I     D IA  + EP+
Sbjct: 183 -----ISF-------LSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPI 230
Query: 100 FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG 159
               G ++PP G+ +       +   + I+DE+  G GR G  F + +  G VPDIIT  
Sbjct: 231 LASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA 290
Query: 160 KPMGNG-MPIGAVITSRKI 177
           K + +G +P+G +  S  +
Sbjct: 291 KGVTSGYVPLGGLAISEAV 309

>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLLLDISPRAF-------MLSS 46
           +EA ++AL++A  Y        +Q  + +   YHG T+  +   S   F       M  S
Sbjct: 114 AEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFES 173
Query: 47  EKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEP-VFVVHGA 105
            K P    IP+   YR E S D  +   +  +    ++E H + IA L  E  V    G 
Sbjct: 174 YKAP----IPY--VYRSE-SGDPDECRDQXLRELAQLLEEHHEEIAALSIESMVQGASGM 226
Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
           +V P G+L+ + +       ++I DE+  G GR+G  F A + +   PD++  GK +  G
Sbjct: 227 IVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPDLMAAGKGITGG 285
Query: 166 -MPIGAVITSRKIAESL 181
            +PI     +  I ++ 
Sbjct: 286 YLPIAVTFATEDIYKAF 302

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 1   SEANDLALQLARAY--------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWV 52
           +EAN+ A +L R +             IVV    + G        +      S+ KK   
Sbjct: 132 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGR-------TLGCISASTTKKCTS 184
Query: 53  HVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
           +  PF   +  +   DD +A ++         E    N+   I EP+    G +VP   +
Sbjct: 185 NFGPFAPQF-SKVPYDDLEALEE---------ELKDPNVCAFIVEPIQGEAGVIVPSDNY 234
Query: 113 LSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAV 171
           L  +YD   +   + +ADE+Q G+GR+G            PD+I +GK +  G  PI AV
Sbjct: 235 LQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYNVKPDVILLGKALSGGHYPISAV 293
Query: 172 ITSRKI 177
           + +  I
Sbjct: 294 LANDDI 299

>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLLLDISPRAF-------MLSS 46
           +EA ++AL++A  Y        +Q  + +   YHG T+  +   S   F       M  S
Sbjct: 114 AEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFES 173
Query: 47  EKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEP-VFVVHGA 105
            K P    IP+   YR E S D  +   +  +    ++E H + IA L  E  V    G 
Sbjct: 174 YKAP----IPY--VYRSE-SGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGM 226
Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
           +V P G+L+ + +       ++I DE+  G GR+G  F A + +   PD++  GK +  G
Sbjct: 227 IVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPDLMAAGKGITGG 285
Query: 166 -MPIGAVITSRKIAESL 181
            +PI     +  I ++ 
Sbjct: 286 YLPIAVTFATEDIYKAF 302

>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 13/193 (6%)
Query: 1   SEANDLALQL------ARAYTGRQNIVVVDAAYHGTVNLLLDIS--PRAFMLSSEKKPWV 52
           SEAND  +++      A     ++ I+    AYHG   +   ++  P   +       +V
Sbjct: 138 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGATAVSASMTGFPYNSVFGLPLPGFV 197
Query: 53  HVIPFPDTYR-GEFSADDPQAAQKYAQA-ARNIMEAHRDNIATLICEPVFVVHGAVVPPP 110
           H+   P  +R GE    + Q   + A+     I     D IA    EPV    G + P  
Sbjct: 198 HLT-CPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAK 256
Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIG 169
           G+   +   + +    VI+DE+ CG GR+G+  W   T    PD I     +  G  P+G
Sbjct: 257 GYFQAILPILRKYDIPVISDEVVCGFGRTGNT-WGCVTYDFTPDAIISSXNLTAGFFPMG 315
Query: 170 AVITSRKIAESLN 182
           AVI   ++++ L 
Sbjct: 316 AVILGPELSKRLE 328

>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 80/201 (39%), Gaps = 29/201 (14%)
Query: 1   SEANDLA------LQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHV 54
           SEAND        L  A     ++ I+    AYHG           A   S   KP+  V
Sbjct: 138 SEANDTXVKXLWFLHAAEGKPQKRKILTRWNAYHGVT---------AVSASXTGKPYNSV 188
Query: 55  --IPFPD------TYRGEFSADDPQAAQKYAQAARNIMEAHR----DNIATLICEPVFVV 102
             +P P        +   +  +     Q  A+ AR + E  +    D IA    EPV   
Sbjct: 189 FGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVXGA 248
Query: 103 HGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM 162
            G + P  G+   +   + +    VI+DE+ CG GR+G+  W   T    PD I   K +
Sbjct: 249 GGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT-WGCVTYDFTPDAIISSKNL 307
Query: 163 GNG-MPIGAVITSRKIAESLN 182
             G  P GAVI   ++++ L 
Sbjct: 308 TAGFFPXGAVILGPELSKRLE 328

>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 27/188 (14%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTV-NLLLDISPRAFMLSSEKKPWVHVIPFPD 59
           +EAN +AL  A A TGR+ ++  D  YHG + N     +P          P+  V+   +
Sbjct: 166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAP-------TNAPYHVVLGVYN 218
Query: 60  TYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDY 119
              G  +AD              +++ H  + A ++ EP+    G V     +L L+   
Sbjct: 219 DVEG--TAD--------------LLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAE 262
Query: 120 IHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
               G ++I DE+       G    A +  G   D+ T+GK +G GM  GA    R + E
Sbjct: 263 ASRCGALLIFDEVMTSRLSGGG---AQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLME 319
Query: 180 SLNCLDDN 187
             +   D 
Sbjct: 320 RFDPARDG 327

>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 90  NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ 149
           N+A  + EP+    G VVP PG+L  + +       + IADEIQ G+ R+G  + A   +
Sbjct: 223 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE 281
Query: 150 GAVPDIITVGKPMGNGM-PIGAVITSRKI 177
              PDI+ +GK +  G+ P+ AV+    I
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDI 310

>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 90  NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ 149
           N+A  + EP+    G VVP PG+L  + +       + IADEIQ G+ R+G  + A   +
Sbjct: 223 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE 281
Query: 150 GAVPDIITVGKPMGNGM-PIGAVITSRKI 177
              PDI+ +GK +  G+ P+ AV+    I
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDI 310

>pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 90  NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ 149
           N+A  + EP+    G VVP PG+L  + +       + IADEIQ G+ R+G  + A   +
Sbjct: 223 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE 281
Query: 150 GAVPDIITVGKPMGNGM-PIGAVITSRKI 177
              PDI+ +GK +  G+ P+ AV+    I
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDI 310

>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 90  NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ 149
           N+A  + EP+    G VVP PG+L  + +       + IADEIQ G+ R+G  + A   +
Sbjct: 186 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE 244
Query: 150 GAVPDIITVGKPMGNGM-PIGAVITSRKI 177
              PDI+ +GK +  G+ P+ AV+    I
Sbjct: 245 NVRPDIVLLGKALSGGLYPVSAVLCDDDI 273

>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 1   SEANDLALQL------ARAYTGRQNIVVVDAAYHG--TVNLLLDISPRAFMLSSEKKPWV 52
           SEAND  +++      A     ++ I+    AYHG   V+  +   P   +       ++
Sbjct: 130 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFI 189
Query: 53  HVIPFPDTYRGEFSADDPQAAQKYAQAARN----IMEAHRDNIATLICEPVFVVHGAVVP 108
           H+   P  +R  +  +    AQ  A+ AR     I     D IA    EPV    G + P
Sbjct: 190 HLT-CPHYWR--YGEEGETEAQFVARLARELEDTITREGADTIAGFFAEPVMGAGGVIPP 246
Query: 109 PPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MP 167
             G+   +   + +    +I+DE+ CG GR+G+  W   T   +PD I     +  G  P
Sbjct: 247 AKGYFQAILPILRKYDIPMISDEVICGFGRTGNT-WGCLTYDFMPDAIISSXNLTAGFFP 305
Query: 168 IGAVITSRKIAESLNC 183
           +GAVI    +A+ +  
Sbjct: 306 MGAVILGPDLAKRVEA 321

>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 78/193 (40%), Gaps = 42/193 (21%)
Query: 1   SEANDLALQLARAYT--------GRQNIVVVDAAYHGTVNLLLDIS-----PRAF--MLS 45
           +EA + A++ AR +          R  I+V +  +HG     + +S      R F  ML 
Sbjct: 103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPML- 161
Query: 46  SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA 105
               P + VIP+ D                       +  A   N A  I EP+    G 
Sbjct: 162 ----PGIIVIPYGDL--------------------EALKAAITPNTAAFILEPIQGEAGI 197
Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
            +PP G+L    +   +   + +ADEIQ G+GR+G  F A       PD+  +G  +G G
Sbjct: 198 NIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-ACDWDNVTPDMYILGXALGGG 256
Query: 166 M-PIGAVITSRKI 177
           + PI     +R I
Sbjct: 257 VFPISCAAANRDI 269

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 45  SSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHG 104
           S++KK   +  PF   +  +   DD +A +K         E    N+   I EPV    G
Sbjct: 158 STDKKCKNNFGPFVPNFL-KVPYDDLEALEK---------ELQDPNVCAFIVEPVQGEAG 207
Query: 105 AVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGN 164
            +VP   +   +     +   + +ADE+Q G+GR+G         G  PD+I +GK +  
Sbjct: 208 VIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGK-LLCTHHYGVKPDVILLGKALSG 266
Query: 165 G-MPIGAVITSRKI 177
           G  PI A++ +  +
Sbjct: 267 GHYPISAILANDDV 280

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 78  QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG 137
           + AR   E    +IA  + EP+    G     P + + M +   E   ++I DE+Q G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 138 RSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
            +G+  WA+Q     PDI+  GK       +  V+  R++ E
Sbjct: 279 LTGTA-WAYQQLDVAPDIVAFGKK----TQVCGVMAGRRVDE 315

>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 16/186 (8%)
Query: 3   ANDLALQL--ARAYTGRQNIVVVDAAYHGTVNLLLDI-SPRAFMLSSEKKPWVHVIPFPD 59
           A  +ALQ    R   G++ ++     YHG   L + I  P   M S     W  V+    
Sbjct: 156 AAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL----WTDVLA-AQ 210
Query: 60  TYRGEFSAD-DPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPPGWLSLMY 117
            +  +   D DP     Y+ A    +  H   +A ++ EPV    G +    P +L  + 
Sbjct: 211 VFAPQVPRDYDP----AYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLR 266
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRK 176
           D       ++I DEI  G GR+G+ F A    G  PDI+ VGK +  G + + A + +  
Sbjct: 267 DICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGGYLSLAATLCTAD 325
Query: 177 IAESLN 182
           +A +++
Sbjct: 326 VAHTIS 331

>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 16/186 (8%)
Query: 3   ANDLALQL--ARAYTGRQNIVVVDAAYHGTVNLLLDI-SPRAFMLSSEKKPWVHVIPFPD 59
           A  +ALQ    R   G++ ++     YHG   L + I  P   M S     W  V+    
Sbjct: 131 AAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL----WTDVLA-AQ 185
Query: 60  TYRGEFSAD-DPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAV-VPPPGWLSLMY 117
            +  +   D DP     Y+ A    +  H   +A ++ EPV    G +    P +L  + 
Sbjct: 186 VFAPQVPRDYDP----AYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLR 241
Query: 118 DYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRK 176
           D       ++I DEI  G GR+G+ F A    G  PDI+ VGK +  G + + A + +  
Sbjct: 242 DICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGGYLSLAATLCTAD 300
Query: 177 IAESLN 182
           +A +++
Sbjct: 301 VAHTIS 306

>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Query: 3   ANDLALQL--ARAYTGRQNIVVVDAAYHGTVNLLLDI-SPRAFMLSSEKKPWVHVIPFPD 59
           A  +ALQ    R   G++ ++     YHG   L + I  P   M S           + D
Sbjct: 151 AAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL----------WTD 200
Query: 60  TYRGEFSADDPQAAQKYAQAARNIMEA----HRDNIATLICEPVFVVHGAV-VPPPGWLS 114
               +  A  PQ  + Y  A     EA    H   +A ++ EPV    G +    P +L 
Sbjct: 201 VLAAQVFA--PQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLH 258
Query: 115 LMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVIT 173
            + D       ++I DEI  G GR+G+ F A    G  PDI+ VGK +  G + + A + 
Sbjct: 259 DLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGGYLSLAATLC 317
Query: 174 SRKIAESLN 182
           +  +A +++
Sbjct: 318 TADVAHTIS 326

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 78  QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG 137
           + AR   E    +IA  + EP+    G     P + + M +   E   ++I DE+Q G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 138 RSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
            +G+  WA+Q     PDI+  GK       +  V+  R++ E
Sbjct: 279 LTGTA-WAYQQLDVAPDIVAFGKK----TQVCGVMAGRRVDE 315

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 78  QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG 137
           + AR   E    +IA  + EP+    G     P + + M +   E   ++I DE+Q G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 138 RSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
            +G+  WA+Q     PDI+  GK       +  V+  R++ E
Sbjct: 279 LTGTA-WAYQQLDVAPDIVAFGKK----TQVCGVMAGRRVDE 315

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 78  QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG 137
           + AR   E    +IA  + EP+    G     P + + M +   E   ++I DE+Q G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 138 RSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
            +G+  WA+Q     PDI+  GK       +  V+  R++ E
Sbjct: 279 LTGTA-WAYQQLDVAPDIVAFGKK----TQVCGVMAGRRVDE 315

>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +E   LAL++ARA+TGR+ I+  +  YHG      D S   +    + +P   V+P    
Sbjct: 123 TETTLLALRVARAFTGRRMILRFEGHYHG----WHDFSASGYNSHFDGQPAPGVLP---- 174
Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
              E +A+         +  R +   H  +IA  I EPV    G       +L    +  
Sbjct: 175 ---ETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELA 231
Query: 121 HEIGGVVIADEIQCGMGRSGSH 142
            + G + I DE+  G  R G+H
Sbjct: 232 RQYGALFILDEVISGF-RVGNH 252

>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127) From Mesorhizobium Loti Maff303099 At 1.55 A Resolution Length = 459

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 15/170 (8%)
Query: 1   SEANDLALQLARAYTG------RQNIVVVDAAYHG----TVNLL-LDISPRAFMLSSEKK 49
           S+AN+  ++L   Y        ++ I+     YHG    T +L  LD+   AF L   + 
Sbjct: 122 SDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVXTGSLTGLDLFHNAFDLP--RA 179
Query: 50  PWVHVIPFPDTYRGEFSADDPQAAQKYA-QAARNIMEAHRDNIATLICEPVFVVHGAVVP 108
           P +H        R + S  + Q +Q  A +    I+    + IA  I EP+    G V P
Sbjct: 180 PVLHTEAPYYFRRTDRSXSEEQFSQHCADKLEEXILAEGPETIAAFIGEPILGTGGIVPP 239
Query: 109 PPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV 158
           P G+   +   + +   +++ADE+  G GR G+ F +    G  PD+IT+
Sbjct: 240 PAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXFGS-DHYGIKPDLITI 288

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	284
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	2e-53
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	5e-52
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	5e-46
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	6e-44
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	2e-42
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	4e-37
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	6e-33
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	7e-33
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	4e-31
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	8e-31
3hmu_A	472	Aminotransferase, class III; structural genomics,	4e-30
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	5e-30
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	7e-30
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	2e-29
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	4e-29
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	8e-28
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	6e-26
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	1e-25
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	3e-25
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	4e-25
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	5e-25
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	4e-24
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	7e-24
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	2e-23
1z7d_A	433	Ornithine aminotransferase; structural genomics co	1e-22
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	2e-22
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	3e-22
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	7e-18
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	5e-17
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	1e-16
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	1e-15
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	1e-15
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	2e-15
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	2e-15
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	2e-15
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	5e-14

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score =  178 bits (454), Expect = 2e-53
 Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW------VHV 54
           +E+N+ A+++A+  TG+  IV    ++HG           +   S+ +K           
Sbjct: 112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAA-----SATYSAGRKGVGPAAVGSFA 166

Query: 55  IPFPDTYRGEFSADDPQAAQKYAQAARN-IMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
           IP P TYR  F  +           A + I      N+A  I EP+    G +  P G++
Sbjct: 167 IPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYM 226

Query: 114 SLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVIT 173
           + +       G ++I DE Q G+GR+G   +A Q  G  PDI+T+ K +G G+P+ A++T
Sbjct: 227 AALKRKCEARGMLLILDEAQTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVT 285

Query: 174 SRKIAESL 181
           S  I E  
Sbjct: 286 SAAIEERA 293

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score =  175 bits (445), Expect = 5e-52
 Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 13/186 (6%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK-----PWVHVI 55
           S+AN+ A +     TGR  ++    AYHG     +     AF   S +        + ++
Sbjct: 114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSM-----AFSGHSVQADAAKADGLILL 168

Query: 56  PFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSL 115
           P+PD YR   +     A          +      +I     EP+    G +VPP G+L  
Sbjct: 169 PYPDPYRPYRNDPTGDAILTLLTEK--LAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRK 226

Query: 116 MYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSR 175
             D     G +V+ DE++ G+ RSG     F+ +G VPDI+ +GK +G G+P+ AVI   
Sbjct: 227 FADICRAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPA 285

Query: 176 KIAESL 181
           +I +  
Sbjct: 286 EILDCA 291

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score =  159 bits (405), Expect = 5e-46
 Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 20/191 (10%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW--------- 51
           +EA + A+++AR  TGR  +V  D AYHG  NL          L+++  P+         
Sbjct: 135 AEAVENAIKVARLATGRPAVVAFDNAYHGRTNL-------TMALTAKSMPYKSQFGPFAP 187

Query: 52  -VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPP 110
            V+ +P     R E      +AA++        + A   ++A +I EP+    G +VP P
Sbjct: 188 EVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA--QSLAAIIIEPIQGEGGFIVPAP 245

Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
           G+L+ +  +  E G V IADE+Q G  R+G  ++A + +G VPDI+T+ K +  GMP+ A
Sbjct: 246 GFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGIAGGMPLSA 304

Query: 171 VITSRKIAESL 181
           V    ++ +++
Sbjct: 305 VTGRAELMDAV 315

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score =  153 bits (390), Expect = 6e-44
 Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 21/194 (10%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW--------- 51
           SEA + A+++AR++T +  +V  D AYHG  NL          L+++  P+         
Sbjct: 132 SEAVENAVKIARSHTHKPAVVAFDHAYHGRTNL-------TMALTAKVMPYKDGFGPFAP 184

Query: 52  -VHVIPFPDTYRG-EFSADDPQAAQKYAQAARNIMEAHR--DNIATLICEPVFVVHGAVV 107
            ++  P    +R  EF  +     +  A+ A  +++     DN+A ++ EP+    G +V
Sbjct: 185 EIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIV 244

Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMP 167
           P  G+L  + D+  +   V IADE+Q G  R+G   +A + +G  PD+I   K +  G+P
Sbjct: 245 PADGFLPTLLDWCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAKGIAGGLP 303

Query: 168 IGAVITSRKIAESL 181
           + AV    +I +S 
Sbjct: 304 LSAVTGRAEIMDSP 317

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score =  149 bits (379), Expect = 2e-42
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 23/191 (12%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW--------- 51
           SEA + A+++ARA T R   +    AYHG  +           L+ +  P+         
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHY-------TLALTGKVNPYSAGMGLMPG 164

Query: 52  -VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPP 110
            V+   +P    G    D   +  +  +      +A  ++IA ++ EPV    G     P
Sbjct: 165 HVYRALYPCPLHGISEDDAIASIHRIFKN-----DAAPEDIAAIVIEPVQGEGGFYASSP 219

Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
            ++  +     E G ++IADE+Q G GR+G   +A +  G  PD+ T  K +  G P+  
Sbjct: 220 AFMQRLRALCDEHGIMLIADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAG 278

Query: 171 VITSRKIAESL 181
           V    ++ +++
Sbjct: 279 VTGRAEVMDAV 289

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score =  135 bits (341), Expect = 4e-37
 Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 33/199 (16%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFM---LSSEKKPW------ 51
           +EA + ++++ +  TGR+ I+     +HG          R F    L++ K         
Sbjct: 114 TEAIEASIKVVKN-TGRKYIIAFLGGFHG----------RTFGSISLTASKAVQRSIVGP 162

Query: 52  ----VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR-------DNIATLICEPVF 100
               V  +P+P+ YR  +  +  +   +        +E +        + +A +  EP+ 
Sbjct: 163 FMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQ 222

Query: 101 VVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGK 160
              G V+PP  + + +     + G +++ DE+Q G+GR+G   +A +    VPD+IT+ K
Sbjct: 223 GEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAK 281

Query: 161 PMGNG-MPIGAVITSRKIA 178
            +G G MPIGA I  + + 
Sbjct: 282 ALGGGIMPIGATIFRKDLD 300

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score =  124 bits (314), Expect = 6e-33
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 11/191 (5%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK-PWVH 53
           SEAND  +++            ++ I+    AYHG   +   ++ + +        P   
Sbjct: 132 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFV 191

Query: 54  VIPFPDTYR-GEFSADDPQAAQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPG 111
            +  P  +R GE    + Q   + A+     ++    D IA    EPV    G + P  G
Sbjct: 192 HLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKG 251

Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGA 170
           +   +   + +    VI+DE+ CG GR+G + W   T    PD I   K +  G  P+GA
Sbjct: 252 YFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGA 310

Query: 171 VITSRKIAESL 181
           VI   ++++ L
Sbjct: 311 VILGPELSKRL 321

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score =  124 bits (313), Expect = 7e-33
 Identities = 48/200 (24%), Positives = 80/200 (40%), Gaps = 29/200 (14%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLL----LDISPRAF--MLSSE 47
           SEAN+ A ++AR Y        R   +     YHG T+  +           +       
Sbjct: 117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFA--- 173

Query: 48  KKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAV 106
                  +  PD YR      +     +  +    +M     + IA  I EP+    G +
Sbjct: 174 --SGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITGGGIL 231

Query: 107 VPPPGWLSLMYDYIHEI----GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPM 162
           + P  ++      +HE     G ++I+DE+ CG GR+G   + F      PDIIT+ K +
Sbjct: 232 MAPQDYMKA----VHETCQKHGALLISDEVICGFGRTG-KAFGFMNYDVKPDIITMAKGI 286

Query: 163 GNG-MPIGAVITSRKIAESL 181
            +  +P+ A    R+I E+ 
Sbjct: 287 TSAYLPLSATAVKREIYEAF 306

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score =  119 bits (301), Expect = 4e-31
 Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 19/195 (9%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK----- 49
           SE+ D  +++ R Y        ++ ++     YHG+      +    +M     +     
Sbjct: 121 SESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYM----HEQGDLP 176

Query: 50  -PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAVV 107
            P +  I  P  Y+        +     A+     +     D +A  + EP+    G +V
Sbjct: 177 IPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIV 236

Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-M 166
           PP  +   +     +   +++ADE+ CG GR+G  ++  Q  G  PD+ T  K + +G +
Sbjct: 237 PPATYWPEIERICRKYDVLLVADEVICGFGRTG-EWFGHQHFGFQPDLFTAAKGLSSGYL 295

Query: 167 PIGAVITSRKIAESL 181
           PIGAV   +++AE L
Sbjct: 296 PIGAVFVGKRVAEGL 310

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score =  118 bits (299), Expect = 8e-31
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 20/196 (10%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKK----- 49
           S+AN+  ++L   Y        ++ I+     YHG+  +   ++                
Sbjct: 122 SDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLF----HNAFDLP 177

Query: 50  -PWVHVIPFPDTYR-GEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAV 106
              V     P  +R  + S  + Q +Q  A     ++ A   + IA  I EP+    G V
Sbjct: 178 RAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIV 237

Query: 107 VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG- 165
            PP G+   +   + +   +++ADE+  G GR G   +     G  PD+IT+ K + +  
Sbjct: 238 PPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-TMFGSDHYGIKPDLITIAKGLTSAY 296

Query: 166 MPIGAVITSRKIAESL 181
            P+  VI + ++ + L
Sbjct: 297 APLSGVIVADRVWQVL 312

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score =  116 bits (294), Expect = 4e-30
 Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 20/195 (10%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLL------LDISPRAFMLSSEK 48
           SEAND  +++ R Y        +  I+    AYHG   +       +        L    
Sbjct: 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHG-STVASSALGGMAGMHAQSGLI--- 181

Query: 49  KPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAVV 107
            P VH I  P+ +      D  +     A+     +     + +A  I EPV    G +V
Sbjct: 182 -PDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIV 240

Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-M 166
            P  +   +     +   ++IADE+ CG GR+G +++  QT G  P I+T+ K + +G  
Sbjct: 241 APDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQTMGIRPHIMTIAKGLSSGYA 299

Query: 167 PIGAVITSRKIAESL 181
           PIG  I   ++A  +
Sbjct: 300 PIGGSIVCDEVAHVI 314

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score =  116 bits (293), Expect = 5e-30
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 20/196 (10%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLL------LDISPRAFMLSSEK 48
           SE    A+++ RAY        +  ++     YHG VN+       ++ + + F      
Sbjct: 120 SECALTAVKMVRAYWRLKGQATKTKMIGRARGYHG-VNIAGTSLGGVNGNRKLFGQPM-- 176

Query: 49  KPWVHVIPFPDTYRGEFSADDPQA-AQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAV 106
              V  +P        +S   P+      A     ++E H   NIA +  EP+    G +
Sbjct: 177 -QDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVL 235

Query: 107 VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG- 165
           VPP G+L    +  ++   +++ DE+  G GR+G   +   + G  PD++ + K + NG 
Sbjct: 236 VPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFGVTPDLMCIAKQVTNGA 294

Query: 166 MPIGAVITSRKIAESL 181
           +P+GAVI S +I ++ 
Sbjct: 295 IPMGAVIASTEIYQTF 310

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score =  114 bits (289), Expect = 7e-30
 Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 29/186 (15%)

Query: 2   EANDLALQLARAYTGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVHVIPF--- 57
           EAN+ AL+ ARA+TGR+  V     + G T+            LS   +P     PF   
Sbjct: 115 EANEAALKFARAHTGRKKFVAAMRGFSGRTM----------GSLSVTWEPKYRE-PFLPL 163

Query: 58  -PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLM 116
                   +  +D +A +           A  +  A +I EPV    G     P +L   
Sbjct: 164 VEPVEFIPY--NDVEALK----------RAVDEETAAVILEPVQGEGGVRPATPEFLRAA 211

Query: 117 YDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRK 176
            +   E G ++I DEIQ GMGR+G   +AF+  G VPDI+T+ K +G G+P+G  +   +
Sbjct: 212 REITQEKGALLILDEIQTGMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREE 270

Query: 177 IAESLN 182
           +A S+ 
Sbjct: 271 VARSMP 276

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score =  115 bits (289), Expect = 2e-29
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 26/196 (13%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLL----LDISPRAF--MLSSE 47
           +EA ++AL++A  Y        +Q  + +   YHG T+  +    +++    +  ++   
Sbjct: 114 AEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLM--- 170

Query: 48  KKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA-- 105
                +  P P  YR E   D  +   +  +    ++E H + IA L  E   +V GA  
Sbjct: 171 --FESYKAPIPYVYRSES-GDPDECRDQCLRELAQLLEEHHEEIAALSIES--MVQGASG 225

Query: 106 -VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGN 164
            +V P G+L+ + +       ++I DE+  G GR+G  F A + +   PD++  GK +  
Sbjct: 226 MIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPDLMAAGKGITG 284

Query: 165 G-MPIGAVITSRKIAE 179
           G +PI     +  I +
Sbjct: 285 GYLPIAVTFATEDIYK 300

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score =  113 bits (286), Expect = 4e-29
 Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 22/194 (11%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHV 54
           SEA + A++LAR Y       GR  ++    +YHG     L  S         ++ +  +
Sbjct: 99  SEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGAR----RELYTPL 154

Query: 55  IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVF-VVHGAVVPPPGW 112
           +  P+ +      D  +   + A+  R ++E    + +A  + EPV      A+ P PG+
Sbjct: 155 MR-PEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGY 213

Query: 113 LSLMYDYIHEI----GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MP 167
                  + +I    G + IADE+  GMGR GS     +  G  PDI  +GK +  G  P
Sbjct: 214 YER----VRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAP 269

Query: 168 IGAVITSRKIAESL 181
           +  ++ + ++ E++
Sbjct: 270 LAGLLAAPQVYETV 283

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score =  110 bits (278), Expect = 8e-28
 Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 19/195 (9%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLL------LDISPRAFMLSSEK 48
           S A D AL+ +  Y        ++ I+V    YHG    L         +   F ++   
Sbjct: 124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHG-STALTAACTGRTGNWPNFDIAQ-- 180

Query: 49  KPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH-RDNIATLICEPVFVVHGAVV 107
              +  +  P+      +           Q   + +E+   D IA  + EP+    G ++
Sbjct: 181 -DRISFLSSPNPRH-AGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVII 238

Query: 108 PPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-M 166
           PP G+ +       +   + I+DE+  G GR G  F + +  G VPDIIT  K + +G +
Sbjct: 239 PPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYV 298

Query: 167 PIGAVITSRKIAESL 181
           P+G +  S  +   +
Sbjct: 299 PLGGLAISEAVLARI 313

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score =  104 bits (261), Expect = 6e-26
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 34/190 (17%)

Query: 2   EANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVHVI 55
           E+ + A++LAR Y       +   +  + ++HG T             LS+  +P  H  
Sbjct: 97  ESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTY----------GSLSATGQPKFHK- 145

Query: 56  PF----PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
            F    P     +   +D  +  K             +  A +I E +    G       
Sbjct: 146 GFEPLVPGFSYAKL--NDIDSVYK----------LLDEETAGIIIEVIQGEGGVNEASED 193

Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
           +LS + +   E   ++I DE+Q G+GR+G  F+A+Q     PD+I + K +G G+PIGA+
Sbjct: 194 FLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQHFNLKPDVIALAKGLGGGVPIGAI 252

Query: 172 ITSRKIAESL 181
           +   ++A+S 
Sbjct: 253 LAREEVAQSF 262

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score =  103 bits (260), Expect = 1e-25
 Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 49/198 (24%)

Query: 2   EANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLS---SEKK-- 49
           EAN+ A +LAR Y        +  I+    A+HG ++          F +S     K   
Sbjct: 125 EANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSL----------FTVSVGGQPKYSD 174

Query: 50  ------PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVH 103
                   +  +PF D                   A + +M+   D+   ++ EP+    
Sbjct: 175 GFGPKPADIIHVPFND-----------------LHAVKAVMD---DHTCAVVVEPIQGEG 214

Query: 104 GAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG 163
           G     P +L  + D   E   +++ DE+QCGMGR+G   +A+   G  PDI+T  K +G
Sbjct: 215 GVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG-DLFAYMHYGVTPDILTSAKALG 273

Query: 164 NGMPIGAVITSRKIAESL 181
            G P+ A++T+++IA + 
Sbjct: 274 GGFPVSAMLTTQEIASAF 291

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score =  102 bits (256), Expect = 3e-25
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)

Query: 2   EANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVHVI 55
           E+ + A++ AR Y           +    ++HG T+            LS          
Sbjct: 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTL----------GALSLTANEKYQK- 152

Query: 56  PF----PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
           PF          ++  +D  + +K             +    +I E V    G       
Sbjct: 153 PFKPLISGVKFAKY--NDISSVEK----------LVNEKTCAIILESVQGEGGINPANKD 200

Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
           +   +     E   ++IADEIQCGMGRSG  F+A++    +PDI+T  K +G G+ +GA 
Sbjct: 201 FYKALRKLCDEKDILLIADEIQCGMGRSG-KFFAYEHAQILPDIMTSAKALGCGLSVGAF 259

Query: 172 ITSRKIAE 179
           + ++K+A 
Sbjct: 260 VINQKVAS 267

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score =  102 bits (257), Expect = 4e-25
 Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 29/196 (14%)

Query: 1   SEANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPW--- 51
           S A ++A+++A  Y       RQ  +     YHG T   +    P   M       W   
Sbjct: 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSM----HSLWKGY 168

Query: 52  ---VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA--- 105
                  P P +        D +  ++       +M AHR  IA +I EP+  V GA   
Sbjct: 169 LPENLFAPAPQSRM------DGEWDERDMVGFARLMAAHRHEIAAVIIEPI--VQGAGGM 220

Query: 106 VVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG 165
            +  P WL  +       G ++IADEI  G GR+G  F A +     PDI+ +GK +  G
Sbjct: 221 RMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGG 279

Query: 166 -MPIGAVITSRKIAES 180
            M + A +T+R++AE+
Sbjct: 280 TMTLSATLTTREVAET 295

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  102 bits (256), Expect = 5e-25
 Identities = 42/207 (20%), Positives = 70/207 (33%), Gaps = 46/207 (22%)

Query: 1   SEANDLALQLARAYTGRQN------------IVVVDAAYHGTVNLLLDISPRAFM-LS-- 45
           + A + AL+ A  +  R N            ++ +  A+HG          R+   LS  
Sbjct: 129 ALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHG----------RSGYTLSLT 178

Query: 46  -SEKK--------PW-VHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLI 95
            ++           W     P+      E +    +A     + AR   E    +IA  +
Sbjct: 179 NTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAE--ALRQARAAFETRPHDIACFV 236

Query: 96  CEPV----FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA 151
            EP+        G     P + + M +   E   ++I DE+Q G G +G   WA+Q    
Sbjct: 237 AEPIQGEG----GDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDV 291

Query: 152 VPDIITVGKPMGNGMPIGAVITSRKIA 178
            PDI+  GK       +          
Sbjct: 292 APDIVAFGKKTQVCGVMAGRRVDEVAD 318

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score = 99.1 bits (248), Expect = 4e-24
 Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 48/199 (24%)

Query: 2   EANDLALQLARAY--------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--- 49
           EA + A++ AR +          R  I+V +  +HG T   +  +S     +SS ++   
Sbjct: 104 EAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRT---MGAVS-----MSSNEEYKR 155

Query: 50  ------PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVH 103
                 P + VIP+           D +A +           A   N A  I EP+    
Sbjct: 156 GFGPMLPGIIVIPY----------GDLEALKA----------AITPNTAAFILEPIQGEA 195

Query: 104 GAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG 163
           G  +PP G+L    +   +   + +ADEIQ G+GR+G   +A       PD+  +GK +G
Sbjct: 196 GINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK-VFACDWDNVTPDMYILGKALG 254

Query: 164 NGM-PIGAVITSRKIAESL 181
            G+ PI     +R I    
Sbjct: 255 GGVFPISCAAANRDILGVF 273

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score = 98.8 bits (247), Expect = 7e-24
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 35/190 (18%)

Query: 2   EANDLALQLARAY-----TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVHVI 55
           EAN+ A+++AR Y       +  I+    ++HG T+            L++  +P     
Sbjct: 108 EANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTL----------GSLTATGQPKYQK- 156

Query: 56  PF----PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPG 111
           PF    P     EF  ++ +  ++             +++  +  EP+    G V     
Sbjct: 157 PFEPLVPGFEYFEF--NNVEDLRR----------KMSEDVCAVFLEPIQGESGIVPATKE 204

Query: 112 WLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
           +L        E   +++ DE+QCGMGR+G   +A+Q  G VPD++T  K +G G+PIGAV
Sbjct: 205 FLEEARKLCDEYDALLVFDEVQCGMGRTG-KLFAYQKYGVVPDVLTTAKGLGGGVPIGAV 263

Query: 172 ITSRKIAESL 181
           I   + A  L
Sbjct: 264 IV-NERANVL 272

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score = 98.5 bits (246), Expect = 2e-23
 Identities = 38/219 (17%), Positives = 69/219 (31%), Gaps = 65/219 (29%)

Query: 1   SEANDLALQLARAYTGRQN--------------------------IVVVDAAYHGTVNLL 34
           S +N+ A +    +   +                           I+    A+HG     
Sbjct: 137 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHG----- 191

Query: 35  LDISPRAFM-LSSEKKPWVH----------VIPFPDTY--RGEFSADDPQAAQKYAQAAR 81
                R    L++     +H          + PFP       EF  ++ Q   +  +   
Sbjct: 192 -----RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVE 246

Query: 82  NIMEAHR---DNIATLICEPV-----FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQ 133
           +++  +R     +A +I EP+                 +   + D   + G   + DE+Q
Sbjct: 247 DLIVKYRKKKKTVAGIIVEPIQSEGGDNH-----ASDDFFRKLRDISRKHGCAFLVDEVQ 301

Query: 134 CGMGRSGSHFWAFQTQG--AVPDIITVGKPMGNGMPIGA 170
            G G +G  FWA +  G     D++T  K M  G     
Sbjct: 302 TGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGFFHK 339

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score = 95.4 bits (238), Expect = 1e-22
 Identities = 52/200 (26%), Positives = 79/200 (39%), Gaps = 47/200 (23%)

Query: 2   EANDLALQLARAY--------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--- 49
           EAN+ A +L R +             IVV    + G T   L  IS      S+ KK   
Sbjct: 133 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRT---LGCIS-----ASTTKKCTS 184

Query: 50  ------PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVH 103
                 P    +P+          DD +A ++         E    N+   I EP+    
Sbjct: 185 NFGPFAPQFSKVPY----------DDLEALEE---------ELKDPNVCAFIVEPIQGEA 225

Query: 104 GAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG 163
           G +VP   +L  +YD   +   + +ADE+Q G+GR+G            PD+I +GK + 
Sbjct: 226 GVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALS 284

Query: 164 NGM-PIGAVITSRKIAESLN 182
            G  PI AV+ +  I   + 
Sbjct: 285 GGHYPISAVLANDDIMLVIK 304

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score = 95.0 bits (237), Expect = 2e-22
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 22/190 (11%)

Query: 1   SEANDLALQLARAY------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKKPWVH 53
           S + ++A ++A  Y       G++ ++     YHG T   +    P   M       W  
Sbjct: 145 SVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGM----HSLWTD 200

Query: 54  VIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGA---VVPPP 110
           V              D      Y+ A    +  H   +A ++ EPV  V GA       P
Sbjct: 201 V--LAAQVFAPQVPRD--YDPAYSAAFEAQLAQHAGELAAVVVEPV--VQGAGGMRFHDP 254

Query: 111 GWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIG 169
            +L  + D       ++I DEI  G GR+G+ F A    G  PDI+ VGK +  G + + 
Sbjct: 255 RYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGGYLSLA 313

Query: 170 AVITSRKIAE 179
           A + +  +A 
Sbjct: 314 ATLCTADVAH 323

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score = 94.2 bits (235), Expect = 3e-22
 Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 47/199 (23%)

Query: 2   EANDLALQLARAY--------TGRQNIVVVDAAYHG-TVNLLLDISPRAFMLSSEKK--- 49
           EA + A +LAR +          +  IV     + G T   L  IS      S++     
Sbjct: 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRT---LSAIS-----SSTDPTSYD 195

Query: 50  ------PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVH 103
                 P   +IP+          +D  A ++              N+A  + EP+    
Sbjct: 196 GFGPFMPGFDIIPY----------NDLPALER---------ALQDPNVAAFMVEPIQGEA 236

Query: 104 GAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG 163
           G VVP PG+L  + +       + IADEIQ G+ R+G  + A   +   PDI+ +GK + 
Sbjct: 237 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALS 295

Query: 164 NGM-PIGAVITSRKIAESL 181
            G+ P+ AV+    I  ++
Sbjct: 296 GGLYPVSAVLCDDDIMLTI 314

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score = 82.7 bits (204), Expect = 7e-18
 Identities = 38/236 (16%), Positives = 71/236 (30%), Gaps = 60/236 (25%)

Query: 1   SEANDLALQLARAY---------------TGRQNIVVVDAAYHG-TV------------- 31
           S A ++AL++A                       ++ +  +YHG T+             
Sbjct: 452 STAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTG 511

Query: 32  ---NLLLDISPRAFML-SSEKKPWVHVIPFPDTYRGEF-----------SADDPQAAQKY 76
                            +         I  P+++                 D  + A   
Sbjct: 512 FLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTL 571

Query: 77  AQAARNIMEAH---------RDNIATLICEPVFVVHGA---VVPPPGWLSLMYDYIHEIG 124
           A+     +  H           ++  LI EPV  +HGA    +  P +  ++ +      
Sbjct: 572 ARIYSAYLSKHLQEHSGVRQSAHVGALIIEPV--IHGAGGMHMVDPLFQRVLVNECRNRK 629

Query: 125 GVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIAE 179
             VI DE+  G  R G      +  G  PDI    K +  G +P+   + +  + +
Sbjct: 630 IPVIFDEVFTGFWRLGVET-TTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFD 684

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465

 Score = 79.6 bits (197), Expect = 5e-17
 Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 43/178 (24%)

Query: 2   EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTY 61
           EAN +AL  A A TGR+ ++  D  YHG                        ++ F    
Sbjct: 167 EANLMALATATAITGRKTVLAFDGGYHG-----------------------GLLNF---- 199

Query: 62  RGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
               S   P  A  +         +   ++++ H  + A ++ EP+    G V     +L
Sbjct: 200 -A--SGHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFL 256

Query: 114 SLMYDYIHEIGGVVIADEIQCG-MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
            L+       G ++I DE+    +   G    A +  G   D+ T+GK +G GM  GA
Sbjct: 257 DLLRAEASRCGALLIFDEVMTSRLSGGG----AQEMLGISADLTTLGKYIGGGMSFGA 310

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453

 Score = 78.0 bits (193), Expect = 1e-16
 Identities = 40/190 (21%), Positives = 63/190 (33%), Gaps = 33/190 (17%)

Query: 2   EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTY 61
           E   LAL++ARA+TGR+ I+  +  YHG  +         F                   
Sbjct: 124 ETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFD------------------ 165

Query: 62  RGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWL 113
            G+ +                   +  R +   H  +IA  I EPV    G       +L
Sbjct: 166 -GQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFL 224

Query: 114 SLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAV 171
               +   + G + I DE+  G  +G  G            PD+  + K    G+P G +
Sbjct: 225 REGAELARQYGALFILDEVISGFRVGNHG----MQALLDVQPDLTCLAKASAGGLPGGIL 280

Query: 172 ITSRKIAESL 181
                +   L
Sbjct: 281 GGREDVMGVL 290

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427

 Score = 75.2 bits (186), Expect = 1e-15
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 42/180 (23%)

Query: 7   ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
            L++ RAYTGR  I+  +  YHG  ++ L                V     V     P  
Sbjct: 124 VLRIMRAYTGRDKIIKFEGCYHGHADMFL----------------VKAGSGVATLGLPS- 166

Query: 61  YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                S   P+              +A + +   +   IA +I EP+    G +VP  G+
Sbjct: 167 -----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGF 221

Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
           L  + +   E   +++ DE+  G  +   G      +  G  PD+ T+GK +G G+P+GA
Sbjct: 222 LEGLREITLEHDALLVFDEVITGFRIAYGG----VQEKFGVTPDLTTLGKIIGGGLPVGA 277

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429

 Score = 75.2 bits (186), Expect = 1e-15
 Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 42/180 (23%)

Query: 7   ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
           AL+LAR YTGR  I+     YHG  + LL                +     V     PD 
Sbjct: 125 ALRLARGYTGRNKILKFIGCYHGHGDSLL----------------IKAGSGVATLGLPD- 167

Query: 61  YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                S   P+   K          ++ +   E   D+IA +I EPV    G V P PG+
Sbjct: 168 -----SPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGF 222

Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
           L  + +   + G ++I DE+  G  +  +          G  PD+  +GK +G G+P+GA
Sbjct: 223 LEGLREVTEQNGALLIFDEVMTGFRVAYNC----GQGYYGVTPDLTCLGKVIGGGLPVGA 278

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 42/191 (21%)

Query: 7   ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
           A++LAR YTGR  I+  D  YHG+ + +L                V        +  P  
Sbjct: 128 AIRLARGYTGRDLILKFDGCYHGSHDAVL----------------VAAGSAAAHYGVPT- 170

Query: 61  YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                SA  P+A  +          +A   +   + D IA +I EPV    G + P   +
Sbjct: 171 -----SAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREF 225

Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
           L+ +     E G ++I DE+  G  +G  G    A        DII +GK +G G P+GA
Sbjct: 226 LAALQRLSRESGALLILDEVVTGFRLGLEG----AQGYFNIEGDIIVLGKIIGGGFPVGA 281

Query: 171 VITSRKIAESL 181
           V  SR++   L
Sbjct: 282 VAGSREVMSLL 292

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434

 Score = 74.8 bits (185), Expect = 2e-15
 Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 42/180 (23%)

Query: 7   ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
            +++ARAYTGR  I+     YHG  +L+L                V           PD 
Sbjct: 127 TIRVARAYTGRTKIMKFAGCYHGHSDLVL----------------VAAGSGPSTLGTPD- 169

Query: 61  YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                SA  PQ+  +          +  +  ++     +A ++ EP+    G V P PG+
Sbjct: 170 -----SAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGF 224

Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
           L  + + +HE G +VI DE+         G    A    G  PD+  +GK +G G+PIGA
Sbjct: 225 LEKVNELVHEAGALVIYDEVITAFRFMYGG----AQDLLGVTPDLTALGKVIGGGLPIGA 280

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429

 Score = 74.4 bits (184), Expect = 2e-15
 Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 42/180 (23%)

Query: 7   ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
           A++LAR YTGR  I+  +  YHG  + LL                V      +    P+ 
Sbjct: 125 AIRLARGYTGRDKIIKFEGCYHGHADCLL----------------VKAGSGALTLGQPN- 167

Query: 61  YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                S   P    K+          + R   E +   +A +I EPV      + P P +
Sbjct: 168 -----SPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEF 222

Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
           L  +     E G ++I DE+  G  +  +G    A      +PD+  +GK +G GMP+GA
Sbjct: 223 LPGLRALCDEFGALLIIDEVMTGFRVALAG----AQDYYHVIPDLTCLGKIIGGGMPVGA 278

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424

 Score = 70.6 bits (174), Expect = 5e-14
 Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 43/180 (23%)

Query: 7   ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVH----VIPF--PDT 60
           AL+LAR YTGR  IV     YHG  + LL                V      +    P  
Sbjct: 124 ALRLARGYTGRPYIVKFRGNYHGHADGLL----------------VEAGSGALTLGVPS- 166

Query: 61  YRGEFSADDPQAAQKY--------AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGW 112
                SA  P+   K          +  R +++   + IA +I EPV    G +VP   +
Sbjct: 167 -----SAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDF 221

Query: 113 LSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA 170
           L  +++     G ++IADE+  G  +   G    A +  G  PD++T+GK +G G+P  A
Sbjct: 222 LKALHE-AKAYGVLLIADEVMTGFRLAFGG----ATELLGLKPDLVTLGKILGGGLPAAA 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	100.0
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	100.0
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
3hmu_A	472	Aminotransferase, class III; structural genomics,	100.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	100.0
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	100.0
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	100.0
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	100.0
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	100.0
1z7d_A	433	Ornithine aminotransferase; structural genomics co	100.0
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	100.0
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	100.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	100.0
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	100.0
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	100.0
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	100.0
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	100.0
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	100.0
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	100.0
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	100.0
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	100.0
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	100.0
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	100.0
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	100.0
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	100.0
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	100.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	100.0
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	100.0
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.97
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.97
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.96
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.93
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.92
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.9
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.9
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.89
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.88
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.88
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.87
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.87
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.87
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.87
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.87
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.86
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.86
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.86
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.86
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.86
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.86
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.86
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.85
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.85
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.85
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.85
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.85
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.85
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.85
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.85
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.84
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.84
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.84
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.84
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.84
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.84
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.84
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.84
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.84
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.84
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.83
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.83
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.83
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.83
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.83
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.83
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.83
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.83
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.83
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.83
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.83
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.83
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.82
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.81
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.81
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.81
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.81
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.81
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.81
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.81
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.81
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.8
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.8
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.8
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.79
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.79
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.79
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.79
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.79
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.79
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.78
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.78
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.78
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.65
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.78
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.77
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.77
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.77
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.77
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.76
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.76
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.76
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.76
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.76
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.76
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.76
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.75
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.75
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.75
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.75
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.74
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.74
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.74
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.73
1svv_A	359	Threonine aldolase; structural genomics, structura	99.73
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.73
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.73
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.73
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.73
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.73
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.73
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.72
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.72
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.71
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.71
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.71
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.71
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.71
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.71
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.71
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.7
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.7
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.7
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.69
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.69
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.68
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.68
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.67
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.67
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.66
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.66
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.65
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.65
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.65
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.65
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.64
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.64
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.63
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.63
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.63
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.63
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.63
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.63
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.62
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.62
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.61
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.61
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.61
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.61
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.6
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.6
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.59
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.58
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.58
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.57
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.57
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.56
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.56
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.56
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.56
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.55
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.55
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.54
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.53
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.53
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.52
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.51
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.51
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.51
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.5
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.5
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.49
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.48
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.47
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.43
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.41
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.41
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.37
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.36
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.35
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.35
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.33
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.33
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.31
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.31
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.29
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.27
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.27
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.26
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.25
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.19
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.17
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.14
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.06
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	98.97
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	98.96
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	98.95
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	98.91
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	98.88
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.88
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	98.82
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	98.82
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	98.75
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	98.71
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	98.36
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	98.35
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	98.25
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	98.22
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	98.17
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	97.76

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=2.9e-59  Score=438.28  Aligned_cols=264  Identities=27%  Similarity=0.423  Sum_probs=222.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccc--cc-CCCCCceEEccCCCCcCCCCCCCc-hHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFM--LS-SEKKPWVHVIPFPDTYRGEFSADD-PQAAQKY   76 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   76 (284)
                      |||||+|||+||+||+|++||+|++||||+|++++++++....  .. ..+...+.++|.|+.++....+.. .+.....
T Consensus       135 sEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  214 (456)
T 4atq_A          135 AEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRA  214 (456)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHH
Confidence            6999999999999999999999999999999999987754321  11 333445666788877665544322 2233333


Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++.+++.+  .++++||||+|||||++|+++||++||++|+++|++||++||+|||||||||||+ +|+++++|+.|||+
T Consensus       215 ~~~~e~~~--~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~-~~a~e~~gv~PDiv  291 (456)
T 4atq_A          215 ITMIEKQI--GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE-WFAVDHEGVVPDII  291 (456)
T ss_dssp             HHHHHHHT--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTTCCCSEE
T ss_pred             HHHHHHhh--cCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc-cccccccCCCCchh
Confidence            33333322  2446999999999999999999999999999999999999999999999999998 89999999999999


Q ss_pred             EecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        157 TVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       157 ~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      |+||+++||+|+|++++++++++.+..                             ++++++++++++++|+++      
T Consensus       292 t~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~  371 (456)
T 4atq_A          292 TMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSA  371 (456)
T ss_dssp             EECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             hhhhcccCcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999998754                             458889999999998875      


Q ss_pred             -----------cCceeEEEEe------cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        202 -----------LHIFWCLILL------SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       202 -----------~G~~~~i~~~------~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                                 .|+|++++++      ++.+.+.++++.|+++|+++.++++.+++|||.|||++|++|||+++++|+++
T Consensus       372 ~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~a  451 (456)
T 4atq_A          372 GGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAA  451 (456)
T ss_dssp             ----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence                       6899999996      23456788999999999999998888899999999999999999999999999


Q ss_pred             HHH
Q psy11784        265 FTS  267 (284)
Q Consensus       265 l~~  267 (284)
                      ++.
T Consensus       452 l~a  454 (456)
T 4atq_A          452 IKA  454 (456)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            975

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=100.00  E-value=1.3e-57  Score=428.55  Aligned_cols=266  Identities=21%  Similarity=0.356  Sum_probs=227.4

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCccccc-CCCCCceEEccCCCCcCCCCC-CCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLS-SEKKPWVHVIPFPDTYRGEFS-ADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~   72 (284)
                      |||||+|||+||+|      ++|++||+|+++|||+|.+++++++..++.. ........++|.|+.+++... ..+++.
T Consensus       138 sEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  217 (473)
T 4e3q_A          138 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQF  217 (473)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHH
Confidence            69999999999987      5788999999999999999999887654432 222334445788887765443 334455


Q ss_pred             HHHHHHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ...+.+++++.+.+.. +++||||+|||||++|+++||++||++|+++|++||++||+|||||||||||+ +|+++++|+
T Consensus       218 ~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~-~fa~e~~gv  296 (473)
T 4e3q_A          218 VARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGN-TWGCVTYDF  296 (473)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSS-SCHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccc-hhHHHhcCC
Confidence            6677888888887544 45999999999999999999999999999999999999999999999999998 899999999


Q ss_pred             CCcEEEecccccCC-cceeEEEecHHHHHhchh------------------------------------hhhHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNG-MPIGAVITSRKIAESLNC------------------------------------LDDNRPSGKYL  194 (284)
Q Consensus       152 ~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~------------------------------------l~~~~~~~~~l  194 (284)
                      .|||+|++|+++|| +|+|++++++++++.+..                                    ++++++++++|
T Consensus       297 ~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l  376 (473)
T 4e3q_A          297 TPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRF  376 (473)
T ss_dssp             CCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred             CCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHH
Confidence            99999999999999 799999999999987632                                    45899999999


Q ss_pred             HHHHHhc-----------cCceeEEEEecc----------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        195 VRPLGIN-----------LHIFWCLILLSI----------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       195 ~~~L~~~-----------~G~~~~i~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      +++|+++           .|+|++++++.+          ......+.+.|+++||++.+.   ++++||.||+++|++|
T Consensus       377 ~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---g~~i~l~PPL~it~~e  453 (473)
T 4e3q_A          377 EERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL---GQSVVLCPPFILTEAQ  453 (473)
T ss_dssp             HHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE---TTEEEECCCTTCCHHH
T ss_pred             HHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec---CCEEEEeCCCCCCHHH
Confidence            9999987           799999998621          234678999999999999864   5899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy11784        254 VLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       254 id~~~~~l~~~l~~~~~  270 (284)
                      +|+++++|+++++++..
T Consensus       454 id~~~~~l~~al~~v~a  470 (473)
T 4e3q_A          454 MDEMFDKLEKALDKVFA  470 (473)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998754

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=100.00  E-value=2.7e-51  Score=383.20  Aligned_cols=237  Identities=22%  Similarity=0.289  Sum_probs=202.2

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      |||||+|||+||+||||++||+|+++|||+|.++++.+...     ..+......|        +++         ++.+
T Consensus       153 sEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~-----~~~~~~~~~p--------~nd---------~~~l  210 (454)
T 4ao9_A          153 TEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPT-----TVPFDFLVLP--------YND---------AQTA  210 (454)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTT-----SCCSEEEEEC--------TTC---------HHHH
T ss_pred             HHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCc-----cCCCCcccCC--------Cch---------HHHH
Confidence            69999999999999999999999999999998877654321     1111122222        343         7889


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecc
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGK  160 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK  160 (284)
                      ++.++++++++||||+|||||++|+++|+++||++|+++|++||++||+|||||  ||+|. +|+++++|+.||++|+||
T Consensus       211 ~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t--GR~G~-~~a~e~~gv~PDi~t~gK  287 (454)
T 4ao9_A          211 RAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAP-HGLANKLGIRSDLTTLGK  287 (454)
T ss_dssp             HHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG--GGGST-TCHHHHHTCCCSEEEEEG
T ss_pred             HHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc--CCCcc-ccchhccCCCCcEEEecc
Confidence            999988778899999999999999999999999999999999999999999999  49998 889999999999999999


Q ss_pred             cccCCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        161 PMGNGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       161 ~l~~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      ++|||+|+|++++++++++.+..                                 ++++++++++|+++|+++      
T Consensus       288 ~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~  367 (454)
T 4ao9_A          288 YIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGV  367 (454)
T ss_dssp             GGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred             ccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999998743                                 458899999999999886      


Q ss_pred             ------cCceeEEEEec------------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLS------------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 ------~G~~~~i~~~~------------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                            .|+|+++++..            +......++..|+++||++.|.+      ++.+++.+|++|||+++++|++
T Consensus       368 ~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~------~~~~s~~~T~~dId~~l~al~~  441 (454)
T 4ao9_A          368 AMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG------FVVLSLPLTDADIDRYVAAIGS  441 (454)
T ss_dssp             SCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC------EEECCTTCCHHHHHHHHHHHHH
T ss_pred             CEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC------CEEEeCCCCHHHHHHHHHHHHH
Confidence                  79999999861            12345678889999999998632      3567888999999999999999


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      +++++
T Consensus       442 ~l~~~  446 (454)
T 4ao9_A          442 FIGGH  446 (454)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            99874

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=2e-46  Score=353.89  Aligned_cols=266  Identities=22%  Similarity=0.389  Sum_probs=226.8

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      ||||+.|+|+||++      ++|.+||+++++|||.+.+++++++..... . ......+.+++.|..++. ++++.++.
T Consensus       124 seA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~  202 (476)
T 3i5t_A          124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAF  202 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHH
Confidence            58999999999999      899999999999999999988887643221 1 223344566788888877 66666666


Q ss_pred             HHHHHHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccc-ccC
Q psy11784         73 AQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQ-TQG  150 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~-~~g  150 (284)
                      ...++++|++++++.. +++++||+||+++++|+++++++||++|+++|++||++||+||||+||||+|+ +|+++ +++
T Consensus       203 ~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~-~~~~~~~~~  281 (476)
T 3i5t_A          203 LDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE-WFASEKVFG  281 (476)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SCHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC-ceeeecccC
Confidence            7777899999997544 46999999999999999999999999999999999999999999999999998 78888 999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhch---------h---------------------------hhhHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLN---------C---------------------------LDDNRPSGKY  193 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~---------~---------------------------l~~~~~~~~~  193 (284)
                      +.||++|+||++++| +|+|++++++++++.+.         .                           ++++++++++
T Consensus       282 v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~  361 (476)
T 3i5t_A          282 VVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADY  361 (476)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             CCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999 89999999999998763         1                           3478888999


Q ss_pred             HHHHHHhc-----------cCceeEEEEeccc----------HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHH
Q psy11784        194 LVRPLGIN-----------LHIFWCLILLSIT----------YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       194 l~~~L~~~-----------~G~~~~i~~~~~~----------~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~  252 (284)
                      +++.|+++           .|+|+++++..+.          .....+++.|+++||++.+.+   +++||+||+++|++
T Consensus       362 l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g---~~iRi~p~l~~t~e  438 (476)
T 3i5t_A          362 FAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLG---DLCVISPPLIISRA  438 (476)
T ss_dssp             HHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEET---TEEEECCCTTCCHH
T ss_pred             HHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEecC---CEEEEECCCCCCHH
Confidence            99999875           5888899886321          136788999999999999753   89999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q psy11784        253 NVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       253 ~id~~~~~l~~~l~~~~~~  271 (284)
                      ++++++++|+++++++.++
T Consensus       439 ~i~~~l~~l~~~l~~~~~~  457 (476)
T 3i5t_A          439 QIDEMVAIMRQAITEVSAA  457 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887653

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=100.00  E-value=3.4e-47  Score=378.89  Aligned_cols=264  Identities=19%  Similarity=0.295  Sum_probs=203.2

Q ss_pred             CcHHHHHHHHH-HHcc--------------CCccEEEEcCCCcccchhhhcCCCCccccc---CCC----------C---
Q psy11784          1 SEANDLALQLA-RAYT--------------GRQNIVVVDAAYHGTVNLLLDISPRAFMLS---SEK----------K---   49 (284)
Q Consensus         1 seA~e~AlklA-r~~~--------------~r~~il~~~~~yHG~t~~~~~~~~~~~~~~---~~~----------~---   49 (284)
                      |||||+|||+| |+|+              +|.+||+|+++|||+|.+++++++......   ...          +   
T Consensus       452 SeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~  531 (831)
T 4a0g_A          452 STAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVF  531 (831)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEE
T ss_pred             hHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCcccc
Confidence            69999999999 6674              478999999999999999999886421110   000          0   


Q ss_pred             --CceEEccCCCCcCCCC------CC---------CchHHHHHHHHHHHHHHHh-----cCCCeeEEEEcce-ecCCCcc
Q psy11784         50 --PWVHVIPFPDTYRGEF------SA---------DDPQAAQKYAQAARNIMEA-----HRDNIATLICEPV-FVVHGAV  106 (284)
Q Consensus        50 --~~~~~~~~~~~~~~~~------~~---------~~~~~~~~~~~~l~~~i~~-----~~~~vaavi~Epv-~~~~G~~  106 (284)
                        +.+.++|.|+.++...      ++         +..+....|+++|++.|+.     ..+++||||+||| ||+||++
T Consensus       532 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~  611 (831)
T 4a0g_A          532 LSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMH  611 (831)
T ss_dssp             EETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSE
T ss_pred             ccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCc
Confidence              1223455666555432      11         0112345677888888863     2455999999997 9999999


Q ss_pred             cCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecccccCC-cceeEEEecHHHHHhchh--
Q psy11784        107 VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC--  183 (284)
Q Consensus       107 ~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~--  183 (284)
                      ++|++||++|+++|++||++||+|||||||||+|+ +|+++++|+.|||+|+||+|+|| +|+|++++++++++.+..  
T Consensus       612 ~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~-~fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~  690 (831)
T 4a0g_A          612 MVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-ETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDS  690 (831)
T ss_dssp             EECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB-SSTHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSC
T ss_pred             cCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC-chhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhccc
Confidence            99999999999999999999999999999999998 78999999999999999999999 699999999999987732  


Q ss_pred             ------------------------h---------hhHHHHHHH--------HHHHHHhc--------cCceeEEEEecc-
Q psy11784        184 ------------------------L---------DDNRPSGKY--------LVRPLGIN--------LHIFWCLILLSI-  213 (284)
Q Consensus       184 ------------------------l---------~~~~~~~~~--------l~~~L~~~--------~G~~~~i~~~~~-  213 (284)
                                              +         +++.+++++        +.+.+.+.        .|+|+++++..+ 
T Consensus       691 ~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~  770 (831)
T 4a0g_A          691 KLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADA  770 (831)
T ss_dssp             GGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---
T ss_pred             ccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCc
Confidence                                    1         122222222        23333332        799999999632 


Q ss_pred             ------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        214 ------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       214 ------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                            ...+..+++.|+++||++.|.   +++|||.||+++|++|||+++++|+++++++
T Consensus       771 ~~~~~~~~~a~~~~~~l~e~Gv~v~p~---g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          771 SNSGYASLYAKSLLIMLREDGIFTRPL---GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             ------CHHHHHHHHHHHHTTEECCCB---TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred             cccccchHHHHHHHHHHHHCCcEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                  235678999999999999864   5899999999999999999999999988654

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=100.00  E-value=3.8e-46  Score=351.67  Aligned_cols=264  Identities=24%  Similarity=0.374  Sum_probs=220.6

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcC-CCCCCCchH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYR-GEFSADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~   71 (284)
                      |||||+|+|+||.|      ++|.+||+|+++|||.+.+++++++... +.. . ....+.++|.|..++ .++ .+.++
T Consensus       126 seA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~-~~~~~  203 (472)
T 3hmu_A          126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG-LIPDVHHINQPNWWAEGGD-MDPEE  203 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC-CCSSEEEECCCCHHHHCTT-CCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC-CCCCcEEeCCCccccCCcc-cCHHH
Confidence            58999999999998      4789999999999999999888775432 111 2 334455677776555 222 34455


Q ss_pred             HHHHHHHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....++++|++++++.. +++++||+||+++++|+++++++||++|+++|++||++||+||||+||||+|+ +|++++++
T Consensus       204 ~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~a~~~~~  282 (472)
T 3hmu_A          204 FGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN-WFGTQTMG  282 (472)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SCHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc-cchhHHhC
Confidence            56667889999987544 45999999999999999999999999999999999999999999999999997 78999999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhchh-------------------------------hhhHH-HHHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC-------------------------------LDDNR-PSGKYLVRP  197 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-------------------------------l~~~~-~~~~~l~~~  197 (284)
                      +.||++||||+++|| +|+|++++++++++.+..                               +++++ ++++++++.
T Consensus       283 v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~  362 (472)
T 3hmu_A          283 IRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEK  362 (472)
T ss_dssp             CCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHH
T ss_pred             CCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            999999999999988 799999999999987721                               34677 888999999


Q ss_pred             HHhc-----------cCceeEEEEecc-----------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHH
Q psy11784        198 LGIN-----------LHIFWCLILLSI-----------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       198 L~~~-----------~G~~~~i~~~~~-----------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id  255 (284)
                      |+++           .|+|+++++..+           ...+..+++.|+++||++.+++   +++||+||+++|+++++
T Consensus       363 L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g---~~iRi~p~~~~t~e~i~  439 (472)
T 3hmu_A          363 WEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG---DRMIISPPLVITPAEID  439 (472)
T ss_dssp             HHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET---TEEEECCCTTCCHHHHH
T ss_pred             HHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC---CEEEEECCCCCCHHHHH
Confidence            9775           588899998632           2236789999999999999864   89999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy11784        256 FIVSTLNRIFTSLQM  270 (284)
Q Consensus       256 ~~~~~l~~~l~~~~~  270 (284)
                      +++++|+++++++..
T Consensus       440 ~~l~~l~~~l~~~~~  454 (472)
T 3hmu_A          440 EMFVRIRKSLDEAQA  454 (472)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987653

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=3.2e-45  Score=343.55  Aligned_cols=266  Identities=25%  Similarity=0.415  Sum_probs=222.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      ||||++|+|+||.++||.+||+|+++|||++.+++++++..  +... ......+.++|.|..++.+++.+.++....++
T Consensus       135 seA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  214 (453)
T 4ffc_A          135 AEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAI  214 (453)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHH
Confidence            58999999999999999999999999999999988876432  2211 22334456678887777665554444444445


Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT  157 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~  157 (284)
                      +.|++.+.  ++.+++||+||+++++|+++++++||++|+++|++||++||+||||+||||+|. +++++++++.||++|
T Consensus       215 ~~l~~~i~--~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~-~~a~~~~~~~pdi~t  291 (453)
T 4ffc_A          215 SRIETQIG--AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA-WFASEHEGIVPDIVT  291 (453)
T ss_dssp             HHHHHHTC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTCCCSEEE
T ss_pred             HHHHHhcC--CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc-cchhhhcCCCcchHh
Confidence            66665542  345999999999999999999999999999999999999999999999999998 788999999999999


Q ss_pred             ecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-------
Q psy11784        158 VGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-------  201 (284)
Q Consensus       158 ~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-------  201 (284)
                      |||++++|+|+|++++++++++.+..                             +++++++++++++.|+++       
T Consensus       292 ~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  371 (453)
T 4ffc_A          292 MAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDII  371 (453)
T ss_dssp             ECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred             hhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            99999999999999999999987753                             346778888888888764       


Q ss_pred             -----cCceeEEEEe------cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        202 -----LHIFWCLILL------SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       202 -----~G~~~~i~~~------~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                           .|+|+++++.      ++......+++.|+++||++.+++.+++++||+||+++|++++++++++|+++++++.
T Consensus       372 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  450 (453)
T 4ffc_A          372 GEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKA  450 (453)
T ss_dssp             EEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                 5889999885      2334678899999999999999887789999999999999999999999999998764

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=100.00  E-value=8.2e-45  Score=340.53  Aligned_cols=265  Identities=26%  Similarity=0.411  Sum_probs=217.0

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCC-CCCchHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEF-SADDPQAAQKY   76 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   76 (284)
                      ||||++|+|+||.++||.+||+++++|||++.+++++++..  +... ......+.++|.|+.++.++ +.+.+.....+
T Consensus       132 seA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  211 (451)
T 3oks_A          132 SEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELA  211 (451)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHH
Confidence            58999999999999999999999999999999988876532  2211 22333455677775554322 11211222334


Q ss_pred             HHHHHHHHHh--cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEA--HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~--~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      ++.+++.+++  .++++++||+||+++++|+++++++||++|+++|++||++||+||||+||||+|+ +++++++++.||
T Consensus       212 ~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~~~pd  290 (451)
T 3oks_A          212 AKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA-MFACEHEGIDPD  290 (451)
T ss_dssp             HHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGTCCCS
T ss_pred             HHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc-chhhhhcCCCCC
Confidence            5566666653  2345999999999999999999999999999999999999999999999999998 789999999999


Q ss_pred             EEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        155 IITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       155 iv~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                      ++||||++++|+|+|++++++++++.+..                             +++++++++++++.|+++    
T Consensus       291 i~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  370 (451)
T 3oks_A          291 LIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAED  370 (451)
T ss_dssp             EEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999987753                             346778888888888764    


Q ss_pred             --------cCceeEEEEe------cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 --------LHIFWCLILL------SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 --------~G~~~~i~~~------~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                              .|+|+++++.      ++......+++.|+++||++.+++.+++++||+||+++|++++++++++|+++++
T Consensus       371 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  449 (451)
T 3oks_A          371 DRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLR  449 (451)
T ss_dssp             TTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence                    5889999885      2344677899999999999999887789999999999999999999999999875

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=100.00  E-value=3e-43  Score=330.44  Aligned_cols=267  Identities=22%  Similarity=0.345  Sum_probs=220.0

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCC-CCCchH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEF-SADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~   71 (284)
                      ||||++|+|++|.|      ++|.+||+++++|||.+.+++++++..... . ......+.++|.|..+++.. +.+.++
T Consensus       122 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~  201 (460)
T 3gju_A          122 SDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQ  201 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhH
Confidence            58999999999998      689999999999999999988876543221 1 22233455678777666542 233445


Q ss_pred             HHHHHHHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....++++|++++++.. +.+++||+||+++++|.++++++||++|+++|++||++||+||||+||||+|+ ++++++++
T Consensus       202 ~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~-~~~~~~~~  280 (460)
T 3gju_A          202 FSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT-MFGSDHYG  280 (460)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SCHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-cchHhhcC
Confidence            55666889999887443 45999999999999999999999999999999999999999999999999997 78889999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhch------h------------------------------hhhHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLN------C------------------------------LDDNRPSGKY  193 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~------~------------------------------l~~~~~~~~~  193 (284)
                      +.||++||||++++| +|+|++++++++++.+.      .                              ++++++++++
T Consensus       281 ~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~  360 (460)
T 3gju_A          281 IKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAY  360 (460)
T ss_dssp             CCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             CCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999999999 79999999999988773      1                              3467778888


Q ss_pred             HHHHHHhc------------cCceeEEEEecc----------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCH
Q psy11784        194 LVRPLGIN------------LHIFWCLILLSI----------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTT  251 (284)
Q Consensus       194 l~~~L~~~------------~G~~~~i~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~  251 (284)
                      +++.|.+.            .|+++++++..+          ...+..+++.|+++||++.+++ .++++||+||+++|+
T Consensus       361 ~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~iRi~~~~~~t~  439 (460)
T 3gju_A          361 FRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP-QGDILGFAPPLCLTR  439 (460)
T ss_dssp             HHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS-SSCEEEECCCTTCCH
T ss_pred             HHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC-CCCEEEEECCCCCCH
Confidence            88888543            588888888622          1236789999999999999865 458999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy11784        252 ENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       252 ~~id~~~~~l~~~l~~~~  269 (284)
                      +++++++++|+++++++.
T Consensus       440 e~i~~~l~~l~~~l~~~~  457 (460)
T 3gju_A          440 EQADIVVSKTADAVKSVF  457 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998764

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=100.00  E-value=7.9e-43  Score=326.56  Aligned_cols=265  Identities=23%  Similarity=0.404  Sum_probs=221.9

Q ss_pred             CcHHHHHHHHHHHc---c---CCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY---T---GRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~---~---~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||++.|+|++++|   +   ++.+||+++++|||.+.+++++++......  ........++|.|+.++++++++.++.
T Consensus       117 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (452)
T 3n5m_A          117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIY  196 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhH
Confidence            58999999999988   6   889999999999999998888775432211  122234556788999999988765555


Q ss_pred             HHHHHHHHHHHHH-hcCCCeeEEEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         73 AQKYAQAARNIME-AHRDNIATLICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        73 ~~~~~~~l~~~i~-~~~~~vaavi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ...++++|++.++ .+++++++||+||+ ++ +|.++++++||++|+++|++||++||+||||+||||+|+ ++++++++
T Consensus       197 ~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~-~~~~~~~~  274 (452)
T 3n5m_A          197 DVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK-AFGFMNYD  274 (452)
T ss_dssp             GCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTT
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc-cchhhhcC
Confidence            5666889999887 44456999999999 89 999999999999999999999999999999999999998 78899999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhch-----h------------------------------hhhHHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLN-----C------------------------------LDDNRPSGKYL  194 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~-----~------------------------------l~~~~~~~~~l  194 (284)
                      +.||++|+||++++| +|+|++++++++++.+.     .                              +++++++++++
T Consensus       275 ~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l  354 (452)
T 3n5m_A          275 VKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLL  354 (452)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             CCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            999999999999999 89999999999998872     1                              34677888888


Q ss_pred             HHHHHhc------------cCceeEEEEecc--------cHHHHHHHHHHHHCCcEEeecCC----CCCEEEEEcCCCCC
Q psy11784        195 VRPLGIN------------LHIFWCLILLSI--------TYYLYRYTRRMKEAKIIVANEGE----YGNVLLFLPAMCLT  250 (284)
Q Consensus       195 ~~~L~~~------------~G~~~~i~~~~~--------~~~~~~~~~~l~~~Gv~~~~~~~----~~~~lr~~p~l~~t  250 (284)
                      ++.|+++            .|+++++++..+        ......+++.|+++||++.+++.    .++++||.||+++|
T Consensus       355 ~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t  434 (452)
T 3n5m_A          355 LEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVIS  434 (452)
T ss_dssp             HHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCC
T ss_pred             HHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCC
Confidence            8888764            578888888521        12356789999999999998753    25899999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy11784        251 TENVLFIVSTLNRIFTS  267 (284)
Q Consensus       251 ~~~id~~~~~l~~~l~~  267 (284)
                      ++++++++++|++++++
T Consensus       435 ~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          435 SEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988753

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=100.00  E-value=8.3e-43  Score=327.40  Aligned_cols=265  Identities=21%  Similarity=0.336  Sum_probs=217.9

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcC-CCCCCCchH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYR-GEFSADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~   71 (284)
                      |||++.|+|+++.+      +++.+||+++++|||.+.+++++++..... . ........++|.|..++ ..+ .+.+.
T Consensus       121 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~  199 (459)
T 4a6r_A          121 SESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDE  199 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHH
Confidence            58999999999998      478999999999999999888776543211 1 22223455677776555 222 34455


Q ss_pred             HHHHHHHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....++++|++.++... +.+++||+||+++++|.++++++||++|+++|++||++||+||||+||||+|+ ++++++++
T Consensus       200 ~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~~~~  278 (459)
T 4a6r_A          200 FGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE-WFGHQHFG  278 (459)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-cchHhhcC
Confidence            55666889999987543 45999999999999999999999999999999999999999999999999997 78889999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhch---h-----------------------------hhhHH-HHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLN---C-----------------------------LDDNR-PSGKYLVR  196 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~---~-----------------------------l~~~~-~~~~~l~~  196 (284)
                      +.||++||||++++| +|+|++++++++++.+.   .                             +++++ ++++++++
T Consensus       279 ~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~  358 (459)
T 4a6r_A          279 FQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQK  358 (459)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHH
T ss_pred             CCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            999999999999988 79999999999988775   1                             33677 78888888


Q ss_pred             HH-Hhc-----------cCceeEEEEecc----------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHH
Q psy11784        197 PL-GIN-----------LHIFWCLILLSI----------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENV  254 (284)
Q Consensus       197 ~L-~~~-----------~G~~~~i~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~i  254 (284)
                      .| +.+           .|+|+++++..+          ......+++.|+++||++.+++   +++||+||+++|++++
T Consensus       359 ~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g---~~iRi~~~~~~t~e~i  435 (459)
T 4a6r_A          359 RWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG---DHIVSAPPLVMTRAEV  435 (459)
T ss_dssp             HHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET---TEEEECCCTTCCHHHH
T ss_pred             HHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC---CEEEEECCCCCCHHHH
Confidence            88 443           678888888622          1236789999999999999864   8999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy11784        255 LFIVSTLNRIFTSLQM  270 (284)
Q Consensus       255 d~~~~~l~~~l~~~~~  270 (284)
                      ++++++|+++++++..
T Consensus       436 ~~~l~~l~~~l~~~~~  451 (459)
T 4a6r_A          436 DEMLAVAERCLEEFEQ  451 (459)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988754

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=100.00  E-value=3e-42  Score=322.50  Aligned_cols=264  Identities=23%  Similarity=0.394  Sum_probs=203.5

Q ss_pred             CcHHHHHHHHHHHc---cC---CccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY---TG---RQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~---~~---r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||++.|+|++|.+   +|   |.+||+++++|||.+.+++++++..... . ......+.++|.|+.++++ +.+.++.
T Consensus       114 seA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  192 (448)
T 3dod_A          114 AEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSE-SGDPDEC  192 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSS-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCC-ccchhhh
Confidence            58999999999998   88   8999999999999998888776532111 1 1112234457888888877 5444445


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEccee-cCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEPVF-VVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Epv~-~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                      ...++++|+++++...+++++||+||++ +++|.++++++||++|+++|++||++||+||||+||||+|+ +++++++++
T Consensus       193 ~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~-~~a~~~~~~  271 (448)
T 3dod_A          193 RDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK-MFACEHENV  271 (448)
T ss_dssp             HHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGTC
T ss_pred             hHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-hhhhhhcCC
Confidence            5566888999987555679999999998 99999999999999999999999999999999999999998 778899999


Q ss_pred             CCcEEEecccccCCc-ceeEEEecHHHHHhch----------h--------------------------hhhHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNGM-PIGAVITSRKIAESLN----------C--------------------------LDDNRPSGKYL  194 (284)
Q Consensus       152 ~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~----------~--------------------------l~~~~~~~~~l  194 (284)
                      .||++|+||++++|+ |+|++++++++++.+.          .                          +++++++++++
T Consensus       272 ~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~  351 (448)
T 3dod_A          272 QPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKL  351 (448)
T ss_dssp             CCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             CCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            999999999999995 9999999999998763          1                          33677788888


Q ss_pred             HHHHHhc-----------cCceeEEEEecccH----------HHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        195 VRPLGIN-----------LHIFWCLILLSITY----------YLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       195 ~~~L~~~-----------~G~~~~i~~~~~~~----------~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      ++.|+++           .|+++++++..+..          .+..+++.|+++||++.|+   ++++||+||+++|+++
T Consensus       352 ~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~~~iRi~~~~~~t~e~  428 (448)
T 3dod_A          352 HFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL---GDVIAFLPPLASTAEE  428 (448)
T ss_dssp             HHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE---TTEEEECCCTTCCHHH
T ss_pred             HHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc---CCEEEEECCCCCCHHH
Confidence            8888763           58888988852211          1478999999999999875   4899999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11784        254 VLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       254 id~~~~~l~~~l~~~~  269 (284)
                      +++++++|+++++++.
T Consensus       429 i~~~l~~l~~~l~~~~  444 (448)
T 3dod_A          429 LSEMVAIMKQAIHEVT  444 (448)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998875

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=100.00  E-value=2.2e-42  Score=324.78  Aligned_cols=253  Identities=20%  Similarity=0.279  Sum_probs=208.3

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCC-c-cccc-CCCCCceEEccCCCCcCCCCCCCchH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPR-A-FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (284)
                      |||||.|+|++|.|      +||.+||+++++|||.+.++++++.. . +... ........+.|.|...   +.     
T Consensus       145 seA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~-----  216 (457)
T 3tfu_A          145 SVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRD---YD-----  216 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSS---CC-----
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcc---cC-----
Confidence            58999999999998      89999999999999999998887531 1 1111 1122223345554321   11     


Q ss_pred             HHHHHHHHHHHHHHhcCCCeeEEEEcc-eecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAHRDNIATLICEP-VFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~~~~vaavi~Ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                        ..++++|++.++++++++++||+|| +++++|.++++++||++|+++|++||++||+||||+||||+|+ +|++++++
T Consensus       217 --~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~-~~a~~~~~  293 (457)
T 3tfu_A          217 --PAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA-LFAADHAG  293 (457)
T ss_dssp             --HHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHT
T ss_pred             --HHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc-hhHhHhcC
Confidence              1137888888876556799999999 9999999999999999999999999999999999999999998 78999999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhch-------h---------------------------hhhHHHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLN-------C---------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~-------~---------------------------l~~~~~~~~~l~  195 (284)
                      +.||++||||+++|| +|+|++++++++++.+.       .                           ++++++++++++
T Consensus       294 ~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~  373 (457)
T 3tfu_A          294 VSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLT  373 (457)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            999999999999999 59999999999988773       1                           347788899999


Q ss_pred             HHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        196 RPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       196 ~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      +.|+++           .|+|+++++. ....+.++++.|+++||++.+.   ++++||.||+++|++|+++++++|+++
T Consensus       374 ~~L~~l~~~~~v~~vr~~G~~~~i~l~-~~~~~~~~~~~l~~~Gv~v~~~---~~~lRi~p~~~~t~eei~~~l~~L~~~  449 (457)
T 3tfu_A          374 AGLDTARALPAVTDVRVCGAIGVIECD-RPVDLAVATPAALDRGVWLRPF---RNLVYAMPPYICTPAEITQITSAMVEV  449 (457)
T ss_dssp             HHHGGGGGSTTEEEEEECSSCEEEEES-SCCCHHHHHHHHHHTTEECCCB---TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCeeeeecCCeEEEEEEC-CcccHHHHHHHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            999875           6888888885 3234678999999999999863   589999999999999999999999999


Q ss_pred             HHHH
Q psy11784        265 FTSL  268 (284)
Q Consensus       265 l~~~  268 (284)
                      ++++
T Consensus       450 l~~~  453 (457)
T 3tfu_A          450 ARLV  453 (457)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            9865

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=100.00  E-value=4.4e-39  Score=299.08  Aligned_cols=267  Identities=24%  Similarity=0.344  Sum_probs=215.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      +||++.|+|+++.++++.+||+++.+|||.+..+++.++...... ......+..++.|..++.+++++.++....++++
T Consensus       112 ~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~  191 (433)
T 1zod_A          112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY  191 (433)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHH
Confidence            589999999999888988999999999999998887664332211 1223345567777776666654222222334788


Q ss_pred             HHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         80 ARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        80 l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      |++.+++.. +++++|++||+++++|.++++++|+++|+++|++||++||+||||+||||+|. +++++++++.||++++
T Consensus       192 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~-~~~~~~~~~~~di~s~  270 (433)
T 1zod_A          192 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT-MFACQRDGVTPDILTL  270 (433)
T ss_dssp             HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTCCCSEEEE
T ss_pred             HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch-HhHHhhcCCCCCEEEe
Confidence            888887433 46999999999999999999999999999999999999999999999999997 6777888999999999


Q ss_pred             cccccCCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        159 GKPMGNGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       159 sK~l~~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      ||++++|+|+|++++++++++.+..                               .++++++++++++.|+++      
T Consensus       271 sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  350 (433)
T 1zod_A          271 SKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDC  350 (433)
T ss_dssp             CHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             cccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999998765532                               236777888888888763      


Q ss_pred             ------cCceeEEEEecc-------cHHHHHHHHHHHHCCcEEeecCCCC--CEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSI-------TYYLYRYTRRMKEAKIIVANEGEYG--NVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 ------~G~~~~i~~~~~-------~~~~~~~~~~l~~~Gv~~~~~~~~~--~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                            .|.++++++...       .....++++.|+++||++.+++.++  +++||+|++.+|++++++++++|+++++
T Consensus       351 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~  430 (433)
T 1zod_A          351 IGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE  430 (433)
T ss_dssp             EEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence                  477888887421       1346789999999999999887655  8999999999999999999999999987


Q ss_pred             HH
Q psy11784        267 SL  268 (284)
Q Consensus       267 ~~  268 (284)
                      ++
T Consensus       431 ~~  432 (433)
T 1zod_A          431 RA  432 (433)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=100.00  E-value=1.3e-38  Score=297.01  Aligned_cols=247  Identities=21%  Similarity=0.369  Sum_probs=189.1

Q ss_pred             CcHHHHHHHHHHHc--------cCCccEEEEcCCCcccchhhhcCCCCccc-cc-CCCCCceEEccCCCCcCCCCCCCch
Q psy11784          1 SEANDLALQLARAY--------TGRQNIVVVDAAYHGTVNLLLDISPRAFM-LS-SEKKPWVHVIPFPDTYRGEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~--------~~r~~il~~~~~yHG~t~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~   70 (284)
                      |||++.|+|+||+|        +||.+||+++++|||.+..++++++.... .. .+....+..+|.        ++   
T Consensus       132 seA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~--------~d---  200 (433)
T 1z7d_A          132 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY--------DD---  200 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT--------TC---
T ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC--------CC---
Confidence            58999999999975        36789999999999998877666542111 00 011112222332        22   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         71 QAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                            +++|++.++  .+++++||+||+++++|.++++++++++|+++|++||++||+||||+||||+|. ++++++++
T Consensus       201 ------~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~-~~~~~~~~  271 (433)
T 1z7d_A          201 ------LEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYN  271 (433)
T ss_dssp             ------HHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT
T ss_pred             ------HHHHHHHhC--CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc-chhhHhcC
Confidence                  688888885  356999999999999999999999999999999999999999999999999997 78888999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +.||++|+||++++| +|+|++++++++++.+..                             .++++++++++++.|++
T Consensus       272 ~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  351 (433)
T 1z7d_A          272 VKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKR  351 (433)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 899999999999887643                             34677888899988876


Q ss_pred             c------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        201 N------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       201 ~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +            .|.++++++........++++.|+++||++.+++  .+++|++||+++|++|+++++++|+++++++
T Consensus       352 l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  429 (433)
T 1z7d_A          352 ELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVH--DKTIRLTPPLCITKEQLDECTEIIVKTVKFF  429 (433)
T ss_dssp             HHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecCC--CCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence            3            4778888874221246789999999999999753  5899999999999999999999999998876


Q ss_pred             h
Q psy11784        269 Q  269 (284)
Q Consensus       269 ~  269 (284)
                      .
T Consensus       430 ~  430 (433)
T 1z7d_A          430 D  430 (433)
T ss_dssp             C
T ss_pred             H
Confidence            3

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=100.00  E-value=2.5e-38  Score=295.61  Aligned_cols=245  Identities=22%  Similarity=0.391  Sum_probs=199.7

Q ss_pred             CcHHHHHHHHHHHc--------cCCccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcCCCCCCCch
Q psy11784          1 SEANDLALQLARAY--------TGRQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYRGEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~--------~~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   70 (284)
                      +||++.|+|++|+|        +||.+||+++++|||.+..+.+.++... ... .+....+..+|.        ++   
T Consensus       143 seA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~--------~d---  211 (439)
T 2oat_A          143 VEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY--------ND---  211 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS--------SC---
T ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC--------CC---
Confidence            58999999999975        2678999999999999987777654221 110 111122233332        22   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         71 QAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                            +++|++.++  .+++++|++||+++++|.++++++++++|+++|++||++||+||||+||||+|+ ++++++++
T Consensus       212 ------~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~-~~~~~~~~  282 (439)
T 2oat_A          212 ------LPALERALQ--DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-WLAVDYEN  282 (439)
T ss_dssp             ------HHHHHHHTT--STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT
T ss_pred             ------HHHHHHHhC--CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc-chhHHHhC
Confidence                  678888875  346999999999999999999999999999999999999999999999999997 78889999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +.||++++||++++| +|+|++++++++++.+..                             .++++++++++++.|++
T Consensus       283 ~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  362 (439)
T 2oat_A          283 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMK  362 (439)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 899999999999887643                             34778889999999987


Q ss_pred             c----------cCceeEEEEeccc-HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        201 N----------LHIFWCLILLSIT-YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       201 ~----------~G~~~~i~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +          .|+++++++.... ....++++.|+++||++.+.+  ++++|+.||+.+|++|+++++++|++++++
T Consensus       363 l~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          363 LPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTH--GDIIRFAPPLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             SCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBSS--SSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecCC--CCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence            4          5678888874221 236789999999999999743  589999999999999999999999988764

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.2e-38  Score=296.31  Aligned_cols=255  Identities=23%  Similarity=0.331  Sum_probs=200.0

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccC-CCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSS-EKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |||++.|+|++|.++++.+||+++++|||.+..+++.++....... .....+.....++....++++         +++
T Consensus       121 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~~  191 (434)
T 3l44_A          121 TEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNN---------VET  191 (434)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTC---------HHH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCccc---------HHH
Confidence            5899999999999999999999999999999888776543211100 000000000011222233333         688


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      |+++++++++++++||+||+++++|.++++++|+++|+++|++||++||+||||+|| |+|. +++++++++.||++|+|
T Consensus       192 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~-~~~~~~~~~~~di~t~s  269 (434)
T 3l44_A          192 LKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY-GGAQDLLGVTPDLTALG  269 (434)
T ss_dssp             HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS-SCHHHHHTCCCSEEEEE
T ss_pred             HHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc-cHHHHHcCCCCCeeehh
Confidence            888887655679999999999999999999999999999999999999999999999 9997 77888999999999999


Q ss_pred             ccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      |++++|+|+|++++++++++.+..                                +++++++++++++.|+++      
T Consensus       270 K~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  349 (434)
T 3l44_A          270 KVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNI  349 (434)
T ss_dssp             GGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999887642                                336778888888888764      


Q ss_pred             ------cCceeEEEEec------------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLS------------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 ------~G~~~~i~~~~------------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                            .|.++++++..            +......+++.|+++||++.+++  .+.+|+  ++++|++|+++++++|++
T Consensus       350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~rl--~~~~t~e~i~~~l~~l~~  425 (434)
T 3l44_A          350 DITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK--YEAWFL--TTEHTKEDIEYTIEAVGR  425 (434)
T ss_dssp             CEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSST--TCCEEC--CTTCCHHHHHHHHHHHHH
T ss_pred             CEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecC--CCcEEE--ecccCHHHHHHHHHHHHH
Confidence                  57788888731            22345778999999999999764  356776  689999999999999999


Q ss_pred             HHHHHhh
Q psy11784        264 IFTSLQM  270 (284)
Q Consensus       264 ~l~~~~~  270 (284)
                      +++++.+
T Consensus       426 ~l~~~~~  432 (434)
T 3l44_A          426 AFAALAD  432 (434)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988753

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=100.00  E-value=5.7e-38  Score=291.52  Aligned_cols=258  Identities=26%  Similarity=0.378  Sum_probs=191.0

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCC--ceEEccCCCCcCCCCCCCch
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKP--WVHVIPFPDTYRGEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~   70 (284)
                      +||++.|+|+++.+      +++.+||+++.+|||.+..+.+++.......  .....  .+.++|.++.+++       
T Consensus        99 ~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  171 (430)
T 3i4j_A           99 SEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARN-------  171 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSC-------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccch-------
Confidence            58999999999998      7899999999999999987776654321110  11111  2333555544332       


Q ss_pred             HHHHHHHHHHHHHHHhcC-CCeeEEEEcceec-CCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc
Q psy11784         71 QAAQKYAQAARNIMEAHR-DNIATLICEPVFV-VHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT  148 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~-~~vaavi~Epv~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~  148 (284)
                        ...++++|++.+++.. +.+++|++||+++ ++|.++++++|+++|+++|++||++||+||||+||||+|+ ++++++
T Consensus       172 --~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~-~~~~~~  248 (430)
T 3i4j_A          172 --GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS-PLALSR  248 (430)
T ss_dssp             --HHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGG
T ss_pred             --hhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhhh
Confidence              1223678888887543 4599999999999 9999999999999999999999999999999999999997 788899


Q ss_pred             c-CCCCcEEEecccccCC-cceeEEEecHHHHHhchh---------------------------------hhhHHHHHHH
Q psy11784        149 Q-GAVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKY  193 (284)
Q Consensus       149 ~-g~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~  193 (284)
                      + ++.||++||||++++| +|+|++++++++++.+..                                 ++++++++++
T Consensus       249 ~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~  328 (430)
T 3i4j_A          249 WSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQ  328 (430)
T ss_dssp             TTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             hcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            9 9999999999999999 999999999999876641                                 3367777888


Q ss_pred             HHHHHHhc------------cCceeEEEEecc--------cHHHHHHHHHHHHCCcEEeec-----CCCCCEEEEEcCCC
Q psy11784        194 LVRPLGIN------------LHIFWCLILLSI--------TYYLYRYTRRMKEAKIIVANE-----GEYGNVLLFLPAMC  248 (284)
Q Consensus       194 l~~~L~~~------------~G~~~~i~~~~~--------~~~~~~~~~~l~~~Gv~~~~~-----~~~~~~lr~~p~l~  248 (284)
                      +++.|+++            .|.++++++...        ...+.++++.|+++||++.++     +..++++|++|+++
T Consensus       329 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~  408 (430)
T 3i4j_A          329 LLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLS  408 (430)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------CEEEECCCTT
T ss_pred             HHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCC
Confidence            88888764            577888887411        122467999999999999986     22367999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q psy11784        249 LTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       249 ~t~~~id~~~~~l~~~l~~~  268 (284)
                      +|++++++++++|+++++++
T Consensus       409 ~t~e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          409 ITAAEVDGLLALLAGALEDV  428 (430)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998865

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=100.00  E-value=5.1e-38  Score=292.56  Aligned_cols=262  Identities=24%  Similarity=0.367  Sum_probs=208.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcc---ccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAF---MLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKY   76 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (284)
                      +||++.|+|++|.++++.+||.++++|||.+..+..+++...   +.. ......+.++|.++.+...   ..    +.+
T Consensus       114 sea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~d  186 (439)
T 3dxv_A          114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDP---TG----DAI  186 (439)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBT---TS----HHH
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccc---cH----HHH
Confidence            589999999999999999999999999999998887764321   110 0000111223433322111   00    113


Q ss_pred             HHHHHHHHH-hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIME-AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~-~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      +++|++.++ ...+++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+||||+|. +++++++++.||+
T Consensus       187 ~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~-~~~~~~~~~~~di  265 (439)
T 3dxv_A          187 LTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR-LHCFEHEGFVPDI  265 (439)
T ss_dssp             HHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS-SSGGGGTTCCCSE
T ss_pred             HHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhHHHhcCCCCCE
Confidence            788888884 33456999999999999999999999999999999999999999999999999997 7788999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      +++||++++|+|+|++++++++++.+..                            +++++++++++++.|+++      
T Consensus       266 ~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  345 (439)
T 3dxv_A          266 LVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPL  345 (439)
T ss_dssp             EEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999876542                            336777788888888764      


Q ss_pred             ------cCceeEEEEe-------cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILL-------SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 ------~G~~~~i~~~-------~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                            .|.++++++.       +.......+++.|+++||++.+++.+++++|++|++.+|++++++++++|+++++++
T Consensus       346 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  425 (439)
T 3dxv_A          346 IGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL  425 (439)
T ss_dssp             EEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             eEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                  5778888874       234457789999999999999987667999999999999999999999999999887


Q ss_pred             hh
Q psy11784        269 QM  270 (284)
Q Consensus       269 ~~  270 (284)
                      .+
T Consensus       426 ~~  427 (439)
T 3dxv_A          426 SA  427 (439)
T ss_dssp             GG
T ss_pred             hc
Confidence            54

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=100.00  E-value=3e-38  Score=293.44  Aligned_cols=252  Identities=24%  Similarity=0.335  Sum_probs=191.6

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccc-cCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFML-SSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |||++.|+|+||.+++|.+||+++++|||.+..++..+...... .......+.....++....++++         +++
T Consensus       119 sea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~~  189 (429)
T 4e77_A          119 TEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYND---------LAS  189 (429)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTC---------HHH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCC---------HHH
Confidence            58999999999999999999999999999998665443221100 00000000000111222333443         788


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      |+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||||+|| |+|. +++++++++.||++|+|
T Consensus       190 le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~-~~~~~~~~~~pdi~t~s  267 (429)
T 4e77_A          190 VRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL-AGAQDYYHVIPDLTCLG  267 (429)
T ss_dssp             HHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT-TCHHHHTTCCCSEEEEE
T ss_pred             HHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc-chHHHhcCCCCCeeeec
Confidence            899998666679999999999999999999999999999999999999999999999 9997 78889999999999999


Q ss_pred             ccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      |++++|+|+|++++++++++.+..                                +++++++++++++.|+++      
T Consensus       268 K~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  347 (429)
T 4e77_A          268 KIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENI  347 (429)
T ss_dssp             GGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999987652                                346778888888888764      


Q ss_pred             ------cCceeEEEEecc-------------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSI-------------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       202 ------~G~~~~i~~~~~-------------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                            .|+|+++++...             ......+++.|+++||++.+++.  ..+  .+++.+|++|+++++++|+
T Consensus       348 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~--~~~~~~t~e~i~~~l~~l~  423 (429)
T 4e77_A          348 PLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAF--EAG--FMSLAHSNEDIQKTVNAAR  423 (429)
T ss_dssp             CCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTT--SCE--ECCTTCCHHHHHHHHHHHH
T ss_pred             ceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCC--CCE--EEeccCCHHHHHHHHHHHH
Confidence                  578888887522             13457899999999999997642  344  4589999999999999999


Q ss_pred             HHHHH
Q psy11784        263 RIFTS  267 (284)
Q Consensus       263 ~~l~~  267 (284)
                      +++++
T Consensus       424 ~~l~~  428 (429)
T 4e77_A          424 RCFAK  428 (429)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            88753

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=100.00  E-value=3.9e-38  Score=296.98  Aligned_cols=256  Identities=18%  Similarity=0.286  Sum_probs=193.8

Q ss_pred             CcHHHHHHHHHHHcc------------------------C--CccEEEEcCCCcccchhhhcCCCCccc-c-cCCCCCce
Q psy11784          1 SEANDLALQLARAYT------------------------G--RQNIVVVDAAYHGTVNLLLDISPRAFM-L-SSEKKPWV   52 (284)
Q Consensus         1 seA~e~AlklAr~~~------------------------~--r~~il~~~~~yHG~t~~~~~~~~~~~~-~-~~~~~~~~   52 (284)
                      |||||+|+|+||+|+                        |  |.+||+|+++|||++.+++++++.... . .....++ 
T Consensus       137 seA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~-  215 (472)
T 1ohv_A          137 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDW-  215 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCC-
T ss_pred             hhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCC-
Confidence            589999999998652                        5  689999999999999999887754321 1 1111111 


Q ss_pred             EEccCCCCcCCCCCCCc---hHHHHHHHHHHHHHHHhcCC---CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCE
Q psy11784         53 HVIPFPDTYRGEFSADD---PQAAQKYAQAARNIMEAHRD---NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGV  126 (284)
Q Consensus        53 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~i~~~~~---~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~l  126 (284)
                      .++|+|. ++++.....   +.....++++|+++++.+.+   ++++||+||+++++|.++++++||++|+++|++||++
T Consensus       216 ~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~l  294 (472)
T 1ohv_A          216 PIAPFPR-LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCA  294 (472)
T ss_dssp             CEECCCC-CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCE
T ss_pred             cccCCCc-ccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCE
Confidence            2234442 232211110   11223357889988874322   6999999999999999999999999999999999999


Q ss_pred             EEEecccccCccccCccccccccCCC--CcEEEeccc-ccCCcceeEEEecHHHHHhchh--------------------
Q psy11784        127 VIADEIQCGMGRSGSHFWAFQTQGAV--PDIITVGKP-MGNGMPIGAVITSRKIAESLNC--------------------  183 (284)
Q Consensus       127 lI~DEv~tG~gr~G~~~~a~~~~g~~--pDiv~~sK~-l~~G~p~gav~~~~~i~~~~~~--------------------  183 (284)
                      ||+||||+||||+|. +|+++++|+.  ||++||||+ ++||+++     ++++.. +..                    
T Consensus       295 li~DEv~~g~g~~g~-~~~~~~~gv~~~~Di~t~sK~~l~GG~~~-----~~~~~~-~~~~~~~~T~~~~~~~~aaa~aa  367 (472)
T 1ohv_A          295 FLVDEVQTGGGSTGK-FWAHEHWGLDDPADVMTFSKKMMTGGFFH-----KEEFRP-NAPYRIFNTWLGDPSKNLLLAEV  367 (472)
T ss_dssp             EEEECTTTTTTTTSS-SSGGGGGCCSSCCSEEEECGGGSSEEEEE-----CGGGSC-SSSSSSCCSSSSCHHHHHHHHHH
T ss_pred             EEEeCcccCCCCCCC-chhccccCCCCCCCEEEEccccccCCccC-----chhhcc-cccccccCccCccHHHHHHHHHH
Confidence            999999999999997 7889999987  999999999 7876543     444421 111                    


Q ss_pred             ---------hhhHHHHHHHHHHHHHhc-------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEE
Q psy11784        184 ---------LDDNRPSGKYLVRPLGIN-------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVL  241 (284)
Q Consensus       184 ---------l~~~~~~~~~l~~~L~~~-------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~l  241 (284)
                               .+++++++++|+++|+++             .|+|+++++. .......+++.|+++||++.+++  .++|
T Consensus       368 l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~Gv~~~~~g--~~~i  444 (472)
T 1ohv_A          368 INIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP-DESIRNKLISIARNKGVMLGGCG--DKSI  444 (472)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS-SHHHHHHHHHHHHHTTEECEEET--TTEE
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeC-ChhHHHHHHHHHHHCCeEEecCC--CCEE
Confidence                     347788888998888763             3667777663 33456789999999999999854  5799


Q ss_pred             EEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        242 LFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       242 r~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      ||+||+++|++||++++++|+++++++
T Consensus       445 Ri~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          445 RFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999988653

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=100.00  E-value=1.4e-37  Score=291.27  Aligned_cols=256  Identities=20%  Similarity=0.306  Sum_probs=201.9

Q ss_pred             CcHHHHHHHHHHHccC------------CccEEEEcCCCcccchhhhcCCCC--ccccc-CCCCCceEEccCCC--CcCC
Q psy11784          1 SEANDLALQLARAYTG------------RQNIVVVDAAYHGTVNLLLDISPR--AFMLS-SEKKPWVHVIPFPD--TYRG   63 (284)
Q Consensus         1 seA~e~AlklAr~~~~------------r~~il~~~~~yHG~t~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~--~~~~   63 (284)
                      |||++.|+|+||.|++            +.+||+++++|||.+.+++++++.  ..... ..+...+.++|.++  ...+
T Consensus       129 seA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  208 (449)
T 2cjg_A          129 ALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEP  208 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHH
T ss_pred             HHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhcc
Confidence            5899999999998876            789999999999999988887754  11111 11222233344333  1100


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcc
Q psy11784         64 EFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHF  143 (284)
Q Consensus        64 ~~~~~~~~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~  143 (284)
                      .    .......++++|++.++.+.+++++|++||+++++|.++++++|+++|+++|++||++||+||||+||||+|. +
T Consensus       209 ~----~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~  283 (449)
T 2cjg_A          209 A----MAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT-A  283 (449)
T ss_dssp             H----HHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-S
T ss_pred             c----cchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc-c
Confidence            0    0111234567788888755567999999999999999999999999999999999999999999999999997 7


Q ss_pred             ccccccCCCCcEEEecccccCCcceeEEEecHHHHHh-----chh-----------------------------hhhHHH
Q psy11784        144 WAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAES-----LNC-----------------------------LDDNRP  189 (284)
Q Consensus       144 ~a~~~~g~~pDiv~~sK~l~~G~p~gav~~~~~i~~~-----~~~-----------------------------l~~~~~  189 (284)
                      |+++++++.||++|+||++    |+|++++++++++.     +..                             .+++++
T Consensus       284 ~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~  359 (449)
T 2cjg_A          284 WAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQ  359 (449)
T ss_dssp             STHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             eeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            7888889999999999999    89999999999875     211                             336778


Q ss_pred             HHHHHHHHHHhc-------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHH
Q psy11784        190 SGKYLVRPLGIN-------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       190 ~~~~l~~~L~~~-------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~  256 (284)
                      +++++++.|+++             .|.|+++++. .......+++.|+++||++.+++  .+++|++||+++|+++|++
T Consensus       360 ~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~Gv~v~~~g--~~~iRi~~~~~~t~e~i~~  436 (449)
T 2cjg_A          360 HGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLP-TTADRDELIRQLWQRAVIVLPAG--ADTVRFRPPLTVSTAEIDA  436 (449)
T ss_dssp             HHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECS-SHHHHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEEC-ChHHHHHHHHHHHHCCeEEecCC--CCEEEEECCCCCCHHHHHH
Confidence            888999888753             4667777763 33356789999999999999864  5899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy11784        257 IVSTLNRIFTSL  268 (284)
Q Consensus       257 ~~~~l~~~l~~~  268 (284)
                      ++++|+++++++
T Consensus       437 ~l~~l~~~l~~~  448 (449)
T 2cjg_A          437 AIAAVRSALPVV  448 (449)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=100.00  E-value=3.9e-38  Score=292.83  Aligned_cols=252  Identities=23%  Similarity=0.314  Sum_probs=199.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||++.|+|++|.++++.+||.++++|||.+.+++..++......  +.... ......++....++++         ++
T Consensus       119 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d---------~~  188 (429)
T 3k28_A          119 TEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPG-VPEGVAKNTITVAYND---------LE  188 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTT-CCHHHHTTEEEEETTC---------HH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCC-CCCcccCceeecCCCC---------HH
Confidence            589999999999999999999999999999988876654321110  00000 0000001112223333         67


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      +|+++++++++++++||+||+++++|.++++++|+++|+++|++||++||+||||+|| |+|. +++++++++.||++|+
T Consensus       189 ~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~-~~~~~~~~~~~di~t~  266 (429)
T 3k28_A          189 SVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAY-NCGQGYYGVTPDLTCL  266 (429)
T ss_dssp             HHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSST-THHHHHHTCCCSEEEE
T ss_pred             HHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc-chHHHHhCCCCceehh
Confidence            8888887655679999999999999999999999999999999999999999999999 9997 7788899999999999


Q ss_pred             cccccCCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        159 GKPMGNGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       159 sK~l~~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      ||++++|+|+|++++++++++.+..                               +++++++++++++.|+++      
T Consensus       267 sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  346 (429)
T 3k28_A          267 GKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRKAAEKHGI  346 (429)
T ss_dssp             CGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999987632                               336778888888888774      


Q ss_pred             ------cCceeEEEEec------------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLS------------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 ------~G~~~~i~~~~------------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                            .|.++++++..            +......+++.|+++||++.+++  .+.+|+  ++++|++++++++++|++
T Consensus       347 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~r~--~~~~t~e~i~~~l~~l~~  422 (429)
T 3k28_A          347 PHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ--FEGLFL--STVHSDADIEATIAAAEI  422 (429)
T ss_dssp             CCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST--TSCBCC--CTTCCHHHHHHHHHHHHH
T ss_pred             CEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCC--CCCEEE--ECCCCHHHHHHHHHHHHH
Confidence                  57788888741            22345788999999999999754  356666  789999999999999999


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      +++++
T Consensus       423 ~l~~~  427 (429)
T 3k28_A          423 AMSKL  427 (429)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=100.00  E-value=4.9e-37  Score=281.88  Aligned_cols=243  Identities=24%  Similarity=0.388  Sum_probs=200.3

Q ss_pred             CcHHHHHHHHHHHc-----cCCccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcCCCCCCCchHHH
Q psy11784          1 SEANDLALQLARAY-----TGRQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYRGEFSADDPQAA   73 (284)
Q Consensus         1 seA~e~AlklAr~~-----~~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (284)
                      +||++.|+++++.+     +++.+||+++.+|||.+..+.+.+.... ... ......+..+|.+        +      
T Consensus       103 ~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------d------  168 (395)
T 3nx3_A          103 TESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN--------D------  168 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT--------C------
T ss_pred             HHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC--------C------
Confidence            58999999999998     7889999999999999988887765321 111 1111222233322        2      


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC
Q psy11784         74 QKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        74 ~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                         +++|++.++   +++++|++||+++++|.++++++++++|+++|++||++||+||||+||||+|. +++++++++.|
T Consensus       169 ---~~~l~~~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~~~~~  241 (395)
T 3nx3_A          169 ---ISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK-FFAYEHAQILP  241 (395)
T ss_dssp             ---HHHHHTTCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTCCC
T ss_pred             ---HHHHHHhcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc-chhHHhcCCCC
Confidence               677777664   56999999999999999999999999999999999999999999999999997 78889999999


Q ss_pred             cEEEecccccCCcceeEEEecHHH-HHhchh-----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        154 DIITVGKPMGNGMPIGAVITSRKI-AESLNC-----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       154 Div~~sK~l~~G~p~gav~~~~~i-~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      |++|+||++++|+|+|++++++++ ++.+..                             +++++++++++++.|+++  
T Consensus       242 d~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (395)
T 3nx3_A          242 DIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELIN  321 (395)
T ss_dssp             SEEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 777643                             235667777888877664  


Q ss_pred             ----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 ----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 ----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                                .|.++++++. .......+++.|+++||++.+++  .+++||+|++.+|++++++++++|++++++
T Consensus       322 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~Gi~v~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          322 EFDFCKKRKGLGFMQGLSLD-KSVKVAKVIQKCQENALLLISCG--ENDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             HCTTEEEEEEETTEEEEEEC-TTSCHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             hCCCeEEEEeEEEEEEEEeC-CcchHHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                      4778888884 32356789999999999999864  689999999999999999999999998763

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=100.00  E-value=1.2e-37  Score=289.12  Aligned_cols=252  Identities=23%  Similarity=0.322  Sum_probs=199.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccc-cCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFML-SSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |||++.|+|+||.++++.+||+++++|||.+..+...+...... .......+.....++....++++         +++
T Consensus       118 sea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~~  188 (427)
T 3fq8_A          118 TEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYND---------LEA  188 (427)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTC---------HHH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCC---------HHH
Confidence            58999999999999999999999999999998877665432110 00000000000001122223333         788


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      |+++++.+++++++|++||+++++|.+.++++|+++|+++|++||++||+||||+|| |+|. +++.+++++.||++++|
T Consensus       189 le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~-~~~~~~~~~~~di~t~s  266 (427)
T 3fq8_A          189 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAY-GGVQEKFGVTPDLTTLG  266 (427)
T ss_dssp             HHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT-THHHHHTTCCCSEEEEC
T ss_pred             HHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc-chhhHhcCCCCChhhhh
Confidence            999998766679999999999999999999999999999999999999999999999 9997 67888999999999999


Q ss_pred             ccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      |++++|+|+|++++++++++.+..                                +++++++++++++.|+++      
T Consensus       267 K~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  346 (427)
T 3fq8_A          267 KIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGH  346 (427)
T ss_dssp             GGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999987652                                346778888888888764      


Q ss_pred             ------cCceeEEEEec------------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLS------------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 ------~G~~~~i~~~~------------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                            .|+++++++..            +......+++.|+++||++.+++.  .  |+.+++.+|++|+++++++|++
T Consensus       347 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~--~--r~~~~~~~t~e~i~~~l~~l~~  422 (427)
T 3fq8_A          347 AACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF--E--AGFTSLAHTEEDIDATLAAART  422 (427)
T ss_dssp             CCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT--S--CEECCTTCCHHHHHHHHHHHHH
T ss_pred             CeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC--C--CEEeeCcCCHHHHHHHHHHHHH
Confidence                  57788888742            112356789999999999997542  2  6778999999999999999999


Q ss_pred             HHHH
Q psy11784        264 IFTS  267 (284)
Q Consensus       264 ~l~~  267 (284)
                      ++++
T Consensus       423 ~l~~  426 (427)
T 3fq8_A          423 VMSA  426 (427)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8865

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=100.00  E-value=1.3e-40  Score=312.51  Aligned_cols=237  Identities=22%  Similarity=0.268  Sum_probs=194.2

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      |||||+|+|+||.+|||.+||+|+++|||++.+++  ++ ...  .+.+.        +.+..+|++         +++|
T Consensus       166 seA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg-~~~--~g~~~--------~~~~~~~~d---------~~~l  223 (465)
T 2yky_A          166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG-HAP--TNAPY--------HVVLGVYND---------VEGT  223 (465)
Confidence            69999999999999999999999999999998877  22 000  11111        222233443         6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecc
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGK  160 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK  160 (284)
                      +++++++++++++||+||+++++|.++++++|+++|+++|++||++||+||||+ | |+|. +++++++|+.||++||||
T Consensus       224 ~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~-~~a~~~~gv~pDi~t~sK  300 (465)
T 2yky_A          224 ADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSG-GGAQEMLGISADLTTLGK  300 (465)
Confidence            888875545799999999999999999999999999999999999999999999 7 9997 789999999999999999


Q ss_pred             cccCCcceeEEEecHHHHHhchh----------------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        161 PMGNGMPIGAVITSRKIAESLNC----------------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       161 ~l~~G~p~gav~~~~~i~~~~~~----------------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      ++++|+|+|++++++++++.+..                                  .+++++++++++++|+++     
T Consensus       301 ~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~  380 (465)
T 2yky_A          301 YIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQ  380 (465)
Confidence            99999999999999999875421                                  347788888888888775     


Q ss_pred             -------cCceeEEEEec------------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLS------------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       202 -------~G~~~~i~~~~------------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                             .|+|+++++..            +......+++.|+++||++.|++. ..     ||+++|++|||+++++|+
T Consensus       381 ~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~-~~-----~s~~~t~edid~~l~~l~  454 (465)
T 2yky_A          381 APLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGM-YA-----LSLEIADAGRDAFAEALA  454 (465)
Confidence                   57888888752            112356789999999999998652 22     889999999999999999


Q ss_pred             HHHHHH
Q psy11784        263 RIFTSL  268 (284)
Q Consensus       263 ~~l~~~  268 (284)
                      ++++++
T Consensus       455 ~~l~~~  460 (465)
T 2yky_A          455 DFIGEQ  460 (465)
Confidence            998775

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=100.00  E-value=2e-36  Score=280.94  Aligned_cols=245  Identities=24%  Similarity=0.438  Sum_probs=198.4

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      +||++.|+|+++.+      +|+.+||+++.+|||.+..+.+.++... ... .+....+..+|.        ++     
T Consensus       124 teA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~--------~d-----  190 (420)
T 2pb2_A          124 TEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF--------ND-----  190 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT--------TC-----
T ss_pred             HHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC--------CC-----
Confidence            58999999999987      6888999999999999987766554321 110 111122223332        22     


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                          +++|++.+.   +++++|++||+++.+|.++++++++++|+++|++||++||+||+|+||||+|+ +++++.+++.
T Consensus       191 ----~~~le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~-~~~~~~~~~~  262 (420)
T 2pb2_A          191 ----LHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYGVT  262 (420)
T ss_dssp             ----HHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSHHHHHTCC
T ss_pred             ----HHHHHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc-HHHHHhcCCC
Confidence                677887775   46999999999999998899999999999999999999999999999999997 6777888999


Q ss_pred             CcEEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        153 PDIITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       153 pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      ||++++||++++|+|+|++++++++++.+..                             .++++++++++.+.|+++  
T Consensus       263 ~diit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~  342 (420)
T 2pb2_A          263 PDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDE  342 (420)
T ss_dssp             CSEEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999887643                             336778888888888763  


Q ss_pred             ----------cCceeEEEEeccc-HHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 ----------LHIFWCLILLSIT-YYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 ----------~G~~~~i~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                                .|.++++++.... ....++++.|+++||++.+++  .+++|++||+.+|++|+++++++|+++++++
T Consensus       343 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~--~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~  418 (420)
T 2pb2_A          343 QFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAG--ADVMRFAPSLVVEEADIHEGMQRFAQAVGKV  418 (420)
T ss_dssp             HHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESS--TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                      5778888874211 146789999999999999864  5899999999999999999999999998765

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=100.00  E-value=9.9e-37  Score=283.64  Aligned_cols=250  Identities=25%  Similarity=0.314  Sum_probs=195.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccc-----ccCCCCCceEEccCCCCcCCCCCCCchHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFM-----LSSEKKPWVHVIPFPDTYRGEFSADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
                      |||+++|+|+||.++++.+||+++++|||.+.++++.++....     ...+.+..    ..++.+..++++        
T Consensus       122 seA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~----~~~~~~~~~~~d--------  189 (434)
T 2epj_A          122 TEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEA----VARLTLVTPYND--------  189 (434)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHH----HHTTEEEEETTC--------
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCc----ccCceEecCCCC--------
Confidence            5899999999999999999999999999999877755432100     00111100    000111112222        


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         76 YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        76 ~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                       +++|++.+++.++++++||+||+++++|.++++++|+++|+++|++||++||+||||+|| |+|. +++++++++.||+
T Consensus       190 -~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~~~~di  266 (434)
T 2epj_A          190 -VEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGL-EGAQGYFNIEGDI  266 (434)
T ss_dssp             -HHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSST-THHHHHHTCCCSE
T ss_pred             -HHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCc-chhhHHhCCCCCe
Confidence             678888887544569999999999999999999999999999999999999999999999 8887 6788889999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      +++||++++|+|+|++++++++++.+..                                .++++++++++++.|+++  
T Consensus       267 ~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~  346 (434)
T 2epj_A          267 IVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLD  346 (434)
T ss_dssp             EEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999876532                                236778888888888763  


Q ss_pred             ----------cCceeEEEEecc------------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHH
Q psy11784        202 ----------LHIFWCLILLSI------------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVS  259 (284)
Q Consensus       202 ----------~G~~~~i~~~~~------------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~  259 (284)
                                .|.++++++...            .....++++.|+++||++.+++.  .  |+.+++.+|++|++++++
T Consensus       347 ~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~--~~~~~~~~t~e~i~~~l~  422 (434)
T 2epj_A          347 RTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL--E--AVFTGLPHQGEALEIAVE  422 (434)
T ss_dssp             HHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT--S--CEECCTTCSHHHHHHHHH
T ss_pred             hCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC--C--cEEEeccCCHHHHHHHHH
Confidence                      567888887421            23467899999999999997642  3  356789999999999999


Q ss_pred             HHHHHHHHHh
Q psy11784        260 TLNRIFTSLQ  269 (284)
Q Consensus       260 ~l~~~l~~~~  269 (284)
                      +|+++++++.
T Consensus       423 ~l~~~l~~~~  432 (434)
T 2epj_A          423 GLRSSLKTVL  432 (434)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998763

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=100.00  E-value=6.4e-36  Score=279.32  Aligned_cols=264  Identities=20%  Similarity=0.298  Sum_probs=205.6

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCcc-ccc-CCCCCceEEccCCCCcCCCCC-CCchH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAF-MLS-SEKKPWVHVIPFPDTYRGEFS-ADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~   71 (284)
                      |||++.|+|+++.|+      ++.+||+++.+|||.+..++..++... +.. ......+..++.|..++..+. .|.++
T Consensus       120 sea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~  199 (449)
T 3a8u_X          120 SECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKE  199 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSS
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHH
Confidence            589999999999876      678999999999999887666554221 110 111223445666654443221 12122


Q ss_pred             HHHHHHHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      ....++++|++.+++.+ +++++|++||+++++|.++++++|+++|+++|++||++||+||||+||||+|. ++++++++
T Consensus       200 ~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~~  278 (449)
T 3a8u_X          200 GGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS-MFGADSFG  278 (449)
T ss_dssp             SHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc-chhhhhcC
Confidence            33345788888887543 46999999999999999999999999999999999999999999999999997 67888889


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhch-----------h---------------------------hhhHHHHH
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLN-----------C---------------------------LDDNRPSG  191 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~-----------~---------------------------l~~~~~~~  191 (284)
                      +.||++++||++++| +|+|++++++++++.+.           .                           .+++++++
T Consensus       279 ~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~  358 (449)
T 3a8u_X          279 VTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVA  358 (449)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             CCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999 89999999998877541           1                           23677888


Q ss_pred             HHHHHHHHhc-----------cCceeEEEEeccc--H--HHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHH
Q psy11784        192 KYLVRPLGIN-----------LHIFWCLILLSIT--Y--YLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       192 ~~l~~~L~~~-----------~G~~~~i~~~~~~--~--~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~  256 (284)
                      +++++.|+++           .|.++++++....  .  ....+.+.|+++||++.+++   +++|++||+.+|++++++
T Consensus       359 ~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g---~~iRis~~~~~t~~~i~~  435 (449)
T 3a8u_X          359 PHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG---DTLQFGPTFNSKPQDLDR  435 (449)
T ss_dssp             HHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET---TEEEECCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC---CEEEEECCCcCCHHHHHH
Confidence            8898888763           4677788875221  1  23468899999999999863   899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy11784        257 IVSTLNRIFTSL  268 (284)
Q Consensus       257 ~~~~l~~~l~~~  268 (284)
                      ++++|+++++++
T Consensus       436 ~l~~l~~~l~~~  447 (449)
T 3a8u_X          436 LFDAVGEVLNKL  447 (449)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=4.9e-35  Score=271.27  Aligned_cols=261  Identities=20%  Similarity=0.366  Sum_probs=204.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCC----c-hHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSAD----D-PQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~-~~~   72 (284)
                      +||++.|+++++.++ +.+||+++.+|||.+..+.++++..  ++.. ......+..+|.++.++.+++.+    + ++.
T Consensus       114 ~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~  192 (419)
T 2eo5_A          114 TEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELV  192 (419)
T ss_dssp             HHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhH
Confidence            589999999999887 6789999999999998877665432  1111 11222345567666555443321    0 111


Q ss_pred             HHHHHHHHH-HHHHhcC--CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc
Q psy11784         73 AQKYAQAAR-NIMEAHR--DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ  149 (284)
Q Consensus        73 ~~~~~~~l~-~~i~~~~--~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~  149 (284)
                      . .++++|+ +.++...  +++++|++||+++++|.++++++++++|+++|++||++||+||||+||||+|. +++++++
T Consensus       193 ~-~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~-~~~~~~~  270 (419)
T 2eo5_A          193 N-RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK-LFAIENF  270 (419)
T ss_dssp             H-HHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGG
T ss_pred             H-HHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc-hhhHHhc
Confidence            1 3467888 8887432  35899999999999999999999999999999999999999999999999997 6777888


Q ss_pred             CCCCcEEEecccccCC-cceeEEEecHHHHHhchh--------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        150 GAVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC--------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       150 g~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~--------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      ++.||++|+||++++| +|+|+++++++++ .+..                          .++++++++++.+.|+++ 
T Consensus       271 ~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~~  349 (419)
T 2eo5_A          271 NTVPDVITLAKALGGGIMPIGATIFRKDLD-FKPGMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGLA  349 (419)
T ss_dssp             TCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCCEEEecccccCCccceEEEEEchHhh-cCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999 9999999999876 5531                          236777888888888763 


Q ss_pred             -----cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 -----LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 -----~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                           .|.++++++.+...... +++.|+++||++.+++  .+++||+|++.+|++++++++++|+++++++
T Consensus       350 ~~~~~~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~--~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          350 DDVRGIGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG--RSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             SEEEEETTEEEEECSCHHHHHH-HHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             hheEeeeEEEEEEEecCccHHH-HHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence                 57888888742223356 8899999999999865  5799999999999999999999999988653

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=100.00  E-value=2e-35  Score=273.98  Aligned_cols=244  Identities=25%  Similarity=0.305  Sum_probs=189.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccc-----cCCCCCceEEccCCCCcCCCCCCCchHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFML-----SSEKKPWVHVIPFPDTYRGEFSADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
                      +||++.|+|+||.++++.+||+++++|||.+..+++.++.....     ..+.+.    ...++.+..++++        
T Consensus       118 ~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~----~~~~~~~~~~~~d--------  185 (424)
T 2e7u_A          118 TEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPE----EYAKLTLVLEYND--------  185 (424)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCH----HHHTTEEEECTTC--------
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCC----ccCCceEeCCCCC--------
Confidence            58999999999999999999999999999998776544221000     011100    0001111222332        


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         76 YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        76 ~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                       +++|++.+++.++++++||+||+++++|.++++++|+++|+++ ++||++||+||||+|| |+|. +++++++++.||+
T Consensus       186 -~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~~~~di  261 (424)
T 2e7u_A          186 -PEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAF-GGATELLGLKPDL  261 (424)
T ss_dssp             -HHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSST-THHHHHHTCCCSE
T ss_pred             -HHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccch-hHHHHHhCCCcch
Confidence             6788888874445699999999999999999999999999999 9999999999999999 8886 6788889999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      +++||++++|+|+|++++++++++.+..                                 .++++++++++++.|+++ 
T Consensus       262 ~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~  341 (424)
T 2e7u_A          262 VTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVL  341 (424)
T ss_dssp             EEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999886532                                 225667788888888763 


Q ss_pred             -----------cCceeEEEEecc------------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHH
Q psy11784        202 -----------LHIFWCLILLSI------------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       202 -----------~G~~~~i~~~~~------------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~  258 (284)
                                 .|.++++++...            .....++++.|+++||++.+++.  .  |+.+++++|++++++++
T Consensus       342 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~--~~~~~~~~t~~~i~~~l  417 (424)
T 2e7u_A          342 KEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF--E--AAFLSVAHREEDVEKTL  417 (424)
T ss_dssp             HHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS--S--CEECCTTCCHHHHHHHH
T ss_pred             HhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC--C--ceEeeccCCHHHHHHHH
Confidence                       567778877421            23466899999999999997642  2  35568999999999999


Q ss_pred             HHHHHH
Q psy11784        259 STLNRI  264 (284)
Q Consensus       259 ~~l~~~  264 (284)
                      ++|+++
T Consensus       418 ~~l~~~  423 (424)
T 2e7u_A          418 EALRKA  423 (424)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=100.00  E-value=9.2e-34  Score=263.09  Aligned_cols=256  Identities=23%  Similarity=0.352  Sum_probs=197.7

Q ss_pred             CcHHHHHHHHHHHccC-----CccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcC-CCCCCCchH
Q psy11784          1 SEANDLALQLARAYTG-----RQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYR-GEFSADDPQ   71 (284)
Q Consensus         1 seA~e~AlklAr~~~~-----r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~   71 (284)
                      +||++.|+++++.+++     +.+||+++.+|||.+..+.++++..  .... .........+|.|.... ..+..  . 
T Consensus       113 tea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-  189 (429)
T 1s0a_A          113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDE--R-  189 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCG--G-
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchH--H-
Confidence            5899999999988765     7789999999999988777665421  1111 11112233455543211 01110  0 


Q ss_pred             HHHHHHHHHHHHHHhcCCCeeEEEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         72 AAQKYAQAARNIMEAHRDNIATLICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        72 ~~~~~~~~l~~~i~~~~~~vaavi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                          .+++|++.+++..+++++|++||+ ++.+|.++++++++++|+++|++||++||+||+|+||||+|. ++++++++
T Consensus       190 ----d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~-~~~~~~~~  264 (429)
T 1s0a_A          190 ----DMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAE  264 (429)
T ss_dssp             ----GGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT
T ss_pred             ----HHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch-HHHhhhcC
Confidence                157788888754456999999999 999999999999999999999999999999999999999997 66778889


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhchh----------------------------------hhhHHHHHHHHH
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC----------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~----------------------------------l~~~~~~~~~l~  195 (284)
                      +.||++++||++++| +|+|++++++++++.+..                                  .+++++++++++
T Consensus       265 ~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~  344 (429)
T 1s0a_A          265 IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLR  344 (429)
T ss_dssp             CCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            999999999999999 899999999988764311                                  236777888898


Q ss_pred             HHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        196 RPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       196 ~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      +.|+++           .|.++++++. .......+.+.|+++||++.+.   ++++|++||+.+|++|+++++++|+++
T Consensus       345 ~~L~~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~l~~~Gi~v~~~---~~~iRis~~~~~t~e~i~~~~~~l~~~  420 (429)
T 1s0a_A          345 EQLAPARDAEMVADVRVLGAIGVVETT-HPVNMAALQKFFVEQGVWIRPF---GKLIYLMPPYIILPQQLQRLTAAVNRA  420 (429)
T ss_dssp             HHHGGGGGCTTEEEEEEETTEEEEEES-SCBCHHHHHHHHHHTTEECCCB---TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEEEeeEEEEEEEC-CcccHHHHHHHHHHCCCEEecc---CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            888763           3566677763 2224567889999999999863   479999999999999999999999988


Q ss_pred             HHHH
Q psy11784        265 FTSL  268 (284)
Q Consensus       265 l~~~  268 (284)
                      ++++
T Consensus       421 ~~~~  424 (429)
T 1s0a_A          421 VQDE  424 (429)
T ss_dssp             TSSG
T ss_pred             HHhh
Confidence            7654

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=100.00  E-value=4.9e-34  Score=267.00  Aligned_cols=249  Identities=20%  Similarity=0.243  Sum_probs=179.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      +||++.|+++||.++++.+||.++++|||.+..+...++..+..+  .+.+.    ...++.+..++++         ++
T Consensus       123 ~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~d---------~~  189 (453)
T 2cy8_A          123 TETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLP----ETTANTLLIRPDD---------IE  189 (453)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEECC--------------------------------CGGGEEEECTTC---------HH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCc----cccCceeecCCCC---------HH
Confidence            589999999999999999999999999999987765442211000  01100    0001111222332         67


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      +|++.++++++++++|++||+++++|.++++++|+++|+++|++||++||+||||+|| |+|. +++++++++.||++++
T Consensus       190 ~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~~~~di~s~  267 (453)
T 2cy8_A          190 GMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN-HGMQALLDVQPDLTCL  267 (453)
T ss_dssp             HHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT-THHHHHHTCCCSEEEE
T ss_pred             HHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc-hhhhHHhCCCCcEEEE
Confidence            8888887544569999999999998999999999999999999999999999999999 8887 6788888999999999


Q ss_pred             cccccCCcceeEEEecHHHHHhchh-------------------------hh---------hHHHHHHHHHHHHHhc---
Q psy11784        159 GKPMGNGMPIGAVITSRKIAESLNC-------------------------LD---------DNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       159 sK~l~~G~p~gav~~~~~i~~~~~~-------------------------l~---------~~~~~~~~l~~~L~~~---  201 (284)
                      ||++++|+|+|++++++++++.+..                         ++         +++++++++++.|+++   
T Consensus       268 sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  347 (453)
T 2cy8_A          268 AKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFAR  347 (453)
T ss_dssp             EGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998875421                         22         3455677777777653   


Q ss_pred             ---------cCceeEEEEec-----c-------------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHH
Q psy11784        202 ---------LHIFWCLILLS-----I-------------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENV  254 (284)
Q Consensus       202 ---------~G~~~~i~~~~-----~-------------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~i  254 (284)
                               .|.++++++..     .             .....++++.|+++||++.+   + +.+  .+++.+|++++
T Consensus       348 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~---~-~~~--~l~~~~t~~~i  421 (453)
T 2cy8_A          348 KGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGG---R-GSV--FLSAQHEREHV  421 (453)
T ss_dssp             TTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBT---T-TEE--ECCTTCCHHHH
T ss_pred             CCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeC---C-CCE--EeeccCCHHHH
Confidence                     56788888842     1             12367799999999999954   2 234  45899999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy11784        255 LFIVSTLNRIFTSLQM  270 (284)
Q Consensus       255 d~~~~~l~~~l~~~~~  270 (284)
                      ++++++|+++++++..
T Consensus       422 ~~~l~~l~~~l~~~~~  437 (453)
T 2cy8_A          422 EHLVTTFDRVLDRLAD  437 (453)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988754

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=100.00  E-value=8.2e-33  Score=255.78  Aligned_cols=260  Identities=23%  Similarity=0.372  Sum_probs=202.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCc--cccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRA--FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      +||++.|+++||.++++.+|+.++.+|||.+..+...++..  ++.. ......+..+|.+..++.   .+    ....+
T Consensus       112 ~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~---~~----~~~d~  184 (426)
T 1sff_A          112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG---IS----EDDAI  184 (426)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGT---BC----HHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccc---cc----hHHHH
Confidence            58999999999988887799999999999987655544321  1110 111112334555432111   00    11126


Q ss_pred             HHHHHHHHhc--CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         78 QAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        78 ~~l~~~i~~~--~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      ++|++.++..  ++++++|++||+++++|...+|++++++|.++|++||++||+||+|+||+++|. +++++.+++.||+
T Consensus       185 ~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~di  263 (426)
T 1sff_A          185 ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMGVAPDL  263 (426)
T ss_dssp             HHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTTSCCSE
T ss_pred             HHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc-hhhhhhcCCCCCE
Confidence            7788888632  245899999999999888999999999999999999999999999999999997 6677888899999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +++||++++|+|+|++++++++++.+..                             .++++++++++++.|+++     
T Consensus       264 ~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  343 (426)
T 1sff_A          264 TTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHP  343 (426)
T ss_dssp             EEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             EEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999887652                             236677788888888663     


Q ss_pred             -------cCceeEEEEec-------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLS-------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 -------~G~~~~i~~~~-------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                             .|.++++++..       ......++++.|+++||++.++..+.+++|++|++.+|++++++++++|++++++
T Consensus       344 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~  423 (426)
T 1sff_A          344 EIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDE  423 (426)
T ss_dssp             TEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence                   46777888741       2245678999999999999987766789999999999999999999999999876


Q ss_pred             H
Q psy11784        268 L  268 (284)
Q Consensus       268 ~  268 (284)
                      +
T Consensus       424 ~  424 (426)
T 1sff_A          424 A  424 (426)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.5e-32  Score=251.61  Aligned_cols=239  Identities=24%  Similarity=0.411  Sum_probs=195.2

Q ss_pred             CcHHHHHHHHHHHc--------cCCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCch
Q psy11784          1 SEANDLALQLARAY--------TGRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~--------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~   70 (284)
                      +||++.|+++++.+        +++.+|++++.+|||.+..+.+++...... . ..........        ++++   
T Consensus       103 t~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~d---  171 (392)
T 3ruy_A          103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI--------PYGD---  171 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEE--------CTTC---
T ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeee--------Cccc---
Confidence            58999999999987        678899999999999998887765432111 0 1111111112        2222   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         71 QAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                            .++|++.++   +++++|++||+++..|.+.++++|+++|.++|++||++||+||+|+|||++|. +++.+.++
T Consensus       172 ------~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~  241 (392)
T 3ruy_A          172 ------LEALKAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK-VFACDWDN  241 (392)
T ss_dssp             ------HHHHHHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS-SSGGGGGT
T ss_pred             ------HHHHHHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc-chhhhccC
Confidence                  677888775   57999999999999999999999999999999999999999999999999997 67888889


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +.||++++||+++|| +|+|++++++++++.+..                             .++++++++++.+.|++
T Consensus       242 ~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~  321 (392)
T 3ruy_A          242 VTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKE  321 (392)
T ss_dssp             CCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 899999999999887653                             23677788888888877


Q ss_pred             c----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        201 N----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       201 ~----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      +          .|.++.+.+. .  ...++++.|+++||++.+++  .+.+|++|++.+|++++++++++|++++
T Consensus       322 ~~~~~~~~~~~~g~~~~~~~~-~--~~~~l~~~l~~~gi~v~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          322 IDNPMITEVRGKGLFIGIELN-E--PARPYCEQLKAAGLLCKETH--ENVIRIAPPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             CCCTTEEEEEEETTEEEEEES-S--CSHHHHHHHHTTTEECCCBT--TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hcCCCceEEEeeeeEEEEEEc-c--hHHHHHHHHHHCCcEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            5          4666677663 2  56788999999999999754  5899999999999999999999998875

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=100.00  E-value=1.5e-32  Score=252.22  Aligned_cols=247  Identities=23%  Similarity=0.411  Sum_probs=200.1

Q ss_pred             CcHHHHHHHHHHHc------cCCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAY------TGRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      +||++.|+++++.+      +|+.+|+..+.+|||.+..+...+...... . ......+..+|.+        +     
T Consensus       106 ~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------d-----  172 (406)
T 4adb_A          106 AEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN--------D-----  172 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT--------C-----
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC--------c-----
Confidence            58999999999987      788999999999999987776655432111 0 1111222223322        2     


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV  152 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~  152 (284)
                          +++|++.++   +++++|+++|+++.||.++++.+++++|.++|++||++||+||+|+|||++|. .++.+.+++.
T Consensus       173 ----~~~l~~~l~---~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~  244 (406)
T 4adb_A          173 ----INSASALID---DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE-LYAYMHYGVT  244 (406)
T ss_dssp             ----HHHHHTTCS---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSHHHHHTCC
T ss_pred             ----HHHHHHHhc---CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hHHHHhcCCC
Confidence                567777664   56999999999999999999999999999999999999999999999999997 6777888999


Q ss_pred             CcEEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        153 PDIITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       153 pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      ||++++||++++|+|+|++++++++++.+..                             .++++++++++.+.|+++  
T Consensus       245 ~d~~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~  324 (406)
T 4adb_A          245 PDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINH  324 (406)
T ss_dssp             CSEEEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887653                             236677788888888764  


Q ss_pred             ----------cCceeEEEEecc-cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        202 ----------LHIFWCLILLSI-TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       202 ----------~G~~~~i~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                                .|.++++++... .....++++.|+++||++.+++  .+.+|+.|++.+|++++++++++|+++++++.+
T Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~--~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~  402 (406)
T 4adb_A          325 RYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAG--GNVVRFAPALNVSEEEVTTGLDRFAAACEHFVS  402 (406)
T ss_dssp             HHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESS--TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             hCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecC--CCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                      467778877421 1247789999999999999854  689999999999999999999999999988754

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.97  E-value=5.7e-30  Score=234.94  Aligned_cols=242  Identities=26%  Similarity=0.475  Sum_probs=188.6

Q ss_pred             CcHHHHHHHHHHHc-----cCCccEEEEcCCCcccchhhhcCCCCc-cccc-CCCCCceEEccCCCCcCCCCCCCchHHH
Q psy11784          1 SEANDLALQLARAY-----TGRQNIVVVDAAYHGTVNLLLDISPRA-FMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAA   73 (284)
Q Consensus         1 seA~e~AlklAr~~-----~~r~~il~~~~~yHG~t~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (284)
                      +||++.|++.++.+     +++.+|+.++.+|||.+..+....+.. .... ......+..+|.        ++      
T Consensus       107 ~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~--------~d------  172 (397)
T 2ord_A          107 TEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF--------NN------  172 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT--------TC------
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC--------CC------
Confidence            48999999998876     577789999999999887554443321 0000 111112222332        11      


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC
Q psy11784         74 QKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        74 ~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                         .++|++.++   +++++|++||+++..|.++++.+++++|.++|++||++||+||+|+||+++|+ .+..+.+++.|
T Consensus       173 ---~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~  245 (397)
T 2ord_A          173 ---VEDLRRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK-LFAYQKYGVVP  245 (397)
T ss_dssp             ---HHHHHHHCC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHTCCC
T ss_pred             ---HHHHHHHhh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc-chhhhhhCCCC
Confidence               677777775   46999999999999998788999999999999999999999999999999887 56666778889


Q ss_pred             cEEEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        154 DIITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       154 Div~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      |++++||++++|+|+|+++++++++ .+..                             .++++++++++.+.|+++   
T Consensus       246 d~~s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  324 (397)
T 2ord_A          246 DVLTTAKGLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEE  324 (397)
T ss_dssp             SEEEECGGGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeeeeccccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998876 5542                             235677788888888653   


Q ss_pred             ---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 ---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 ---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                               .|.++++++. ......++++.|+++||++.+++  .+.+|++||+.+|++++++++++|++++++
T Consensus       325 ~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~l~~~gi~v~~~~--~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          325 YDVVADVRGMGLMIGIQFR-EEVSNREVATKCFENKLLVVPAG--NNTIRFLPPLTVEYGEIDLAVETLKKVLQG  396 (397)
T ss_dssp             CTTEEEEEEETTEEEEEEC-TTSCHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEEeEEEEEEEC-ChHHHHHHHHHHHHCCCEEccCC--CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence                     3566677663 22246789999999999999864  579999999999999999999999988754

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.97  E-value=1.4e-28  Score=225.42  Aligned_cols=239  Identities=28%  Similarity=0.462  Sum_probs=186.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccc-c-cCCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFM-L-SSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      +||++.|++.++.++++..||.++.+|||.+..+....+.... . .......+..+|.        .+         .+
T Consensus       114 ~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~--------~d---------~~  176 (395)
T 1vef_A          114 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY--------ND---------VE  176 (395)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT--------TC---------HH
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC--------Cc---------HH
Confidence            4799999999887767788999999999988765554432210 0 0011111112221        11         67


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      +|++.++   +++++|+++|+++..|.+.++++++++|.++|++||++||+||+|+||++.|. .+..+..++.||++++
T Consensus       177 ~l~~~i~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~-~~~~~~~~~~~d~~s~  252 (395)
T 1vef_A          177 ALKRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-RFAFEHFGIVPDILTL  252 (395)
T ss_dssp             HHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTCCCSEEEE
T ss_pred             HHHHHhc---cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc-hhHhhhcCCCCCEEEE
Confidence            7887775   46899999999999999899999999999999999999999999999998887 5566777888999999


Q ss_pred             cccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--------
Q psy11784        159 GKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--------  201 (284)
Q Consensus       159 sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--------  201 (284)
                      +|++++|+++|++++++++++.+..                             .++++++++++.+.|+++        
T Consensus       253 sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  332 (395)
T 1vef_A          253 AKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREV  332 (395)
T ss_dssp             CGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred             cccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCceEEE
Confidence            9999999999999999998876643                             225667788888888764        


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                        .|.++++.+. .  ....+++.|. ++||++.+++  .+.+|+.+++.+|++++++++++|.+++
T Consensus       333 ~~~g~~~~~~~~-~--~~~~l~~~l~~~~gi~v~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          333 RGMGLMVGLELK-E--KAAPYIARLEKEHRVLALQAG--PTVIRFLPPLVIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             EEETTEEEEEES-S--CSHHHHHHHHHHHCEECEESS--TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEEEc-C--hHHHHHHHHHHHCCeEEecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence              3456666663 2  2567889999 9999999853  5799999999999999999999998875

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.96  E-value=3e-28  Score=221.33  Aligned_cols=238  Identities=25%  Similarity=0.405  Sum_probs=184.4

Q ss_pred             CcHHHHHHHHHHHcc-----CCccEEEEcCCCcccchhhhcCCCCcccc-c-CCCCCceEEccCCCCcCCCCCCCchHHH
Q psy11784          1 SEANDLALQLARAYT-----GRQNIVVVDAAYHGTVNLLLDISPRAFML-S-SEKKPWVHVIPFPDTYRGEFSADDPQAA   73 (284)
Q Consensus         1 seA~e~AlklAr~~~-----~r~~il~~~~~yHG~t~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (284)
                      +||++.|++++|.++     ||.+|++.+.+|||....+.......... . ......+..+|.+        +      
T Consensus        96 t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------d------  161 (375)
T 2eh6_A           96 TESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLN--------D------  161 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTT--------C------
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCc--------h------
Confidence            479999999887665     66899999999999887665443221100 0 0111112222321        1      


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC
Q psy11784         74 QKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        74 ~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                         .++|++.++   +++++|+++|.++..|.+.++++++++|.++|++||+++|+||+|++||++|. .+..+.++..|
T Consensus       162 ---~~~l~~~l~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~  234 (375)
T 2eh6_A          162 ---IDSVYKLLD---EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQHFNLKP  234 (375)
T ss_dssp             ---HHHHHTTCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTCCC
T ss_pred             ---HHHHHHHhc---CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-chhhhhcCCCC
Confidence               567776664   46899999999999999989999999999999999999999999999998886 45667778889


Q ss_pred             cEEEecccccCCcceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        154 DIITVGKPMGNGMPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       154 Div~~sK~l~~G~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      |++++||.+++|+++|++++++++++.+..                           .++++++++++.+.|+++     
T Consensus       235 d~~s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  314 (375)
T 2eh6_A          235 DVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGNYFKEKLKELGKGKV  314 (375)
T ss_dssp             SEEEECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE
T ss_pred             CEEEEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999998876643                           225566777888888764     


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                        .|.++++++. .  ...++++.|+++||++.+++  .+.+|+.+++.+|++++++++++|+++
T Consensus       315 ~~~g~~~~~~~~-~--~~~~~~~~l~~~gi~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          315 KGRGLMLGLELE-R--ECKDYVLKALEKGLLINCTA--GKVLRFLPPLIIQKEHIDRAISVLREI  374 (375)
T ss_dssp             EEETTEEEEECS-S--CCHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEEEc-C--cHHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence              4667777763 2  25678889999999999753  579999999999999999999999875

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.93  E-value=8.2e-25  Score=202.41  Aligned_cols=239  Identities=13%  Similarity=0.105  Sum_probs=170.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +||++.|++.++.  ...+|+++..+|||....+......           +..+|... ....+..|        +++|
T Consensus       129 ~ea~~~a~~~~~~--~gd~Vi~~~~~y~~~~~~~~~~g~~-----------~~~~~~~~-~~~~~~~d--------~~~l  186 (421)
T 3l8a_A          129 VPAISIALQAFSE--KGDAVLINSPVYYPFARTIRLNDHR-----------LVENSLQI-INGRFEID--------FEQL  186 (421)
T ss_dssp             HHHHHHHHHHHSC--TEEEEEEEESCCHHHHHHHHHTTEE-----------EEEEECEE-ETTEEECC--------HHHH
T ss_pred             HHHHHHHHHHhcC--CCCEEEECCCCcHHHHHHHHHCCCE-----------EEeccccc-cCCCeeeC--------HHHH
Confidence            4789999998743  3367999999999977665543211           11122210 00001111        6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-----cccCCCCcE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-----QTQGAVPDI  155 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-----~~~g~~pDi  155 (284)
                      ++.+..  +++++|+++++++.+| .+++++++++|+++|++||++||+||+|++|+++|.....+     +..+..+++
T Consensus       187 e~~i~~--~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  263 (421)
T 3l8a_A          187 EKDIID--NNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIIL  263 (421)
T ss_dssp             HHHHHH--TTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEE
T ss_pred             HHHhhc--cCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEE
Confidence            888863  4689999999999988 67788899999999999999999999999999888522222     123455778


Q ss_pred             EEeccccc-CCcceeEEEec-HHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        156 ITVGKPMG-NGMPIGAVITS-RKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~~-~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      .+++|+++ +|+|+|+++++ +++++.+..                                .++++++.+++.+.|++.
T Consensus       264 ~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~  343 (421)
T 3l8a_A          264 SSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAK  343 (421)
T ss_dssp             ECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            89999998 78999999998 888776543                                224556677777777663


Q ss_pred             --------cCceeE-EEEecccHHHHHHHHHHHH-CCcEEeecCC----CCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 --------LHIFWC-LILLSITYYLYRYTRRMKE-AKIIVANEGE----YGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 --------~G~~~~-i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                              .|.++. +++........++++.|++ +||++.++..    ..+++||.++  .++++|++++++|+++++
T Consensus       344 ~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          344 TKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             CSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred             CCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence                    344444 7764212245678888975 5999998643    3479999987  599999999999998764

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.92  E-value=3e-23  Score=192.40  Aligned_cols=230  Identities=14%  Similarity=0.121  Sum_probs=169.1

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      +|++.|++..   +++...|.+...+|+.+.......+..          +..+|        +++         .++|+
T Consensus       135 ~a~~~al~~l---~~~gd~vl~~~~~h~~~~~~~~~~g~~----------~~~~~--------~~d---------~~~le  184 (427)
T 2w8t_A          135 MANLGIISTL---AGKGEYVILDADSHASIYDGCQQGNAE----------IVRFR--------HNS---------VEDLD  184 (427)
T ss_dssp             HHHHHHHHHH---SCTTCEEEEETTCCHHHHHHHHHSCSE----------EEEEC--------TTC---------HHHHH
T ss_pred             HHHHHHHHHh---cCCCCEEEECCcccHHHHHHHHHcCCe----------eEEeC--------CCC---------HHHHH
Confidence            5666666653   455555556677777655443332211          11122        122         68889


Q ss_pred             HHHHhcCC-CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccC--ccccCccccccccCCCCc----
Q psy11784         82 NIMEAHRD-NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGM--GRSGSHFWAFQTQGAVPD----  154 (284)
Q Consensus        82 ~~i~~~~~-~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~--gr~G~~~~a~~~~g~~pD----  154 (284)
                      +.++...+ ++++|++||++++.|.+.+    +++|+++|++||++||+||+|+++  +++|.  +..+++++.||    
T Consensus       185 ~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~--~~~~~~~~~~~~di~  258 (427)
T 2w8t_A          185 KRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGR--GVYEAQGLEGQIDFV  258 (427)
T ss_dssp             HHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC--CHHHHTTCTTCCSEE
T ss_pred             HHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC--chHhhcCCCcCCcEE
Confidence            98885444 6899999999999998887    999999999999999999999963  45554  34566787777    


Q ss_pred             EEEecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc-
Q psy11784        155 IITVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       155 iv~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~-  201 (284)
                      +.+++|+++  ++.|++++++++++.+..                                .++++++++++++.|+++ 
T Consensus       259 ~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g  336 (427)
T 2w8t_A          259 VGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMG  336 (427)
T ss_dssp             EEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             Eecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence            678999996  566999999888775533                                236677788888888764 


Q ss_pred             --------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC-----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 --------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY-----GNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 --------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                              .|.++++.+ ++.....++++.|+++||++.++...     .+++|++++..+|++++++++++|+++++++
T Consensus       337 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~  415 (427)
T 2w8t_A          337 FRLGTETCDSAIVAVML-EDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV  415 (427)
T ss_dssp             CEESCSSCCSSEEEEEE-SSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCCCCCEEEEEE-CCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence                    245566666 34456778999999999999886432     3689999999999999999999999999887


Q ss_pred             hh
Q psy11784        269 QM  270 (284)
Q Consensus       269 ~~  270 (284)
                      .+
T Consensus       416 ~~  417 (427)
T 2w8t_A          416 GV  417 (427)
T ss_dssp             TC
T ss_pred             Cc
Confidence            54

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.90  E-value=1.8e-22  Score=185.85  Aligned_cols=180  Identities=12%  Similarity=0.125  Sum_probs=143.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc--CccccCccccccccCC--C
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGA--V  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--~gr~G~~~~a~~~~g~--~  152 (284)
                      .++|++.++..  +.++|+++++++..|.+.+    +++|+++|++||++||+||+|++  +|++|. .+. ..+++  .
T Consensus       175 ~~~le~~l~~~--~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~-~~~-~~~~~~~~  246 (409)
T 3kki_A          175 CDHLRMLIQRH--GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGA-GLL-AELGLTRE  246 (409)
T ss_dssp             HHHHHHHHHHH--CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGC-CHH-HHHTCGGG
T ss_pred             HHHHHHHHHhc--CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-cch-hhcCCCCC
Confidence            67888888743  2589999999999998877    99999999999999999999997  888886 333 45566  4


Q ss_pred             CcE--EEecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHH
Q psy11784        153 PDI--ITVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       153 pDi--v~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L  198 (284)
                      +|+  .+++|++++|  .|++++++++++.+..                                .++++++++++.+.|
T Consensus       247 ~di~~~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L  324 (409)
T 3kki_A          247 VHFMTASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGL  324 (409)
T ss_dssp             CSEEEEESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeecchhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            677  6789999876  5888888877665432                                225667788888888


Q ss_pred             Hhc------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        199 GIN------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       199 ~~~------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +++      .|.++++.+. ......++++.|+++||++.+...     ..+++||.|+..+|++++++++++|+++++.
T Consensus       325 ~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          325 SQLGLTIRSESQIIGLETG-DERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             HTTTCCCCCSSSEEEEEEE-SHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCccCCCCCEEEEEeC-CHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence            875      4667777773 444567899999999999976432     3479999999999999999999999998875

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.90  E-value=3.5e-22  Score=182.40  Aligned_cols=184  Identities=16%  Similarity=0.203  Sum_probs=145.8

Q ss_pred             HHHHHHHHHhcCC---CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccc-ccC-ccccCccccccccCC
Q psy11784         77 AQAARNIMEAHRD---NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQ-CGM-GRSGSHFWAFQTQGA  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~---~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tG~-gr~G~~~~a~~~~g~  151 (284)
                      .+++++.++....   ++++|+++++++..|.+.+    +++|.++|++||+++|+||+| .|+ ++.|.  ...+.+++
T Consensus       159 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~  232 (399)
T 3tqx_A          159 MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGR--GTPEYCGV  232 (399)
T ss_dssp             TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC--CHHHHHTC
T ss_pred             HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC--chHHhhCC
Confidence            3566777764332   6999999999999998877    999999999999999999999 465 55554  34556666


Q ss_pred             --CCcEE--EecccccCCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHH
Q psy11784        152 --VPDII--TVGKPMGNGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYL  194 (284)
Q Consensus       152 --~pDiv--~~sK~l~~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l  194 (284)
                        .+|++  +++|+++ |++.|++++++++++.+..                                 .++++++.+++
T Consensus       233 ~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  311 (399)
T 3tqx_A          233 ADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYF  311 (399)
T ss_dssp             TTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence              78988  8999999 6788999999998876643                                 12556667777


Q ss_pred             HHHHHhc-------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        195 VRPLGIN-------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       195 ~~~L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      .+.|+++       .|.++++.+ +......++++.|.++||++.+...     ..+++|++++..+|++++++++++|.
T Consensus       312 ~~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  390 (399)
T 3tqx_A          312 RAGMEKLGFQLVPGNHPIIPVML-GDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFG  390 (399)
T ss_dssp             HHHHHHHTCCBCCCSSSEEEEEE-ECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcCCCCCCEEEEEe-CCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHH
Confidence            7777764       566777777 3445678899999999999987532     23689999999999999999999999


Q ss_pred             HHHHHH
Q psy11784        263 RIFTSL  268 (284)
Q Consensus       263 ~~l~~~  268 (284)
                      ++++++
T Consensus       391 ~~~~~~  396 (399)
T 3tqx_A          391 QVGKKL  396 (399)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998765

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.89  E-value=2.5e-21  Score=179.57  Aligned_cols=245  Identities=13%  Similarity=0.111  Sum_probs=163.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++..+.  ....|++.+.+|++....+....+..          +..+|....  ..+.-|        +++|
T Consensus       121 ~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~----------~~~~~~~~~--~~~~~d--------~~~l  178 (435)
T 3piu_A          121 TSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRTGVE----------IVPIHCTSS--NGFQIT--------ETAL  178 (435)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTTCCE----------EEEEECCGG--GTSCCC--------HHHH
T ss_pred             HHHHHHHHHHhcC--CCCeEEECCCccccHHHHHHHhcCCE----------EEEeeCCCc--cCCcCC--------HHHH
Confidence            3677777776643  23568888888877655433222211          112232211  111112        6777


Q ss_pred             HHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC----CC-
Q psy11784         81 RNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG----AV-  152 (284)
Q Consensus        81 ~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g----~~-  152 (284)
                      ++.++.   ...++++|++++.++..|. +++.+.+++|.++|++||++||+||+|+++++.|..+......+    +. 
T Consensus       179 ~~~l~~~~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~  257 (435)
T 3piu_A          179 EEAYQEAEKRNLRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDE  257 (435)
T ss_dssp             HHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-----
T ss_pred             HHHHHHHHhcCCCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcccccccc
Confidence            777763   2335888888887877776 56788899999999999999999999998777665222222211    11 


Q ss_pred             ----Cc----EEEeccccc-CCcceeEEEe-cHHHHHhchh--------------------------------hhhHHHH
Q psy11784        153 ----PD----IITVGKPMG-NGMPIGAVIT-SRKIAESLNC--------------------------------LDDNRPS  190 (284)
Q Consensus       153 ----pD----iv~~sK~l~-~G~p~gav~~-~~~i~~~~~~--------------------------------l~~~~~~  190 (284)
                          +|    +.++||+++ +|+++|++++ ++++.+.+..                                .++++++
T Consensus       258 ~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  337 (435)
T 3piu_A          258 NSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQR  337 (435)
T ss_dssp             --CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence                44    568999998 7899999999 5666665433                                1134445


Q ss_pred             HHHHHHHHHhc--------cCceeEEEEecc-----cHHHHHHHHHHHHC-CcEEeecCC----CCCEEEEEcCCCCCHH
Q psy11784        191 GKYLVRPLGIN--------LHIFWCLILLSI-----TYYLYRYTRRMKEA-KIIVANEGE----YGNVLLFLPAMCLTTE  252 (284)
Q Consensus       191 ~~~l~~~L~~~--------~G~~~~i~~~~~-----~~~~~~~~~~l~~~-Gv~~~~~~~----~~~~lr~~p~l~~t~~  252 (284)
                      .+++.+.|++.        .|+++++.+...     .....++++.|+++ ||++.++..    ..+++||.++.. |++
T Consensus       338 ~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e  416 (435)
T 3piu_A          338 QKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PER  416 (435)
T ss_dssp             HHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHH
T ss_pred             HHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHH
Confidence            55666666654        347778877411     11456788889877 999998643    357999998766 999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy11784        253 NVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       253 ~id~~~~~l~~~l~~~~  269 (284)
                      ++++++++|.++++++.
T Consensus       417 ~i~~~l~~l~~~l~~~~  433 (435)
T 3piu_A          417 TLDLAMQRLKAFVGEYY  433 (435)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.88  E-value=5.1e-21  Score=174.22  Aligned_cols=241  Identities=11%  Similarity=0.058  Sum_probs=166.0

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++..  .....+|++...+||+....+......           +..+|... ....+..+        .++|
T Consensus        95 ~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~-~~~~~~~d--------~~~l  152 (391)
T 3dzz_A           95 VPAISAMVRQF--TSPGDQILVQEPVYNMFYSVIEGNGRR-----------VISSDLIY-ENSKYSVN--------WADL  152 (391)
T ss_dssp             HHHHHHHHHHH--SCTTCEEEECSSCCHHHHHHHHHTTCE-----------EEECCCEE-ETTEEECC--------HHHH
T ss_pred             HHHHHHHHHHh--CCCCCeEEECCCCcHHHHHHHHHcCCE-----------EEEeeeee-cCCceeec--------HHHH
Confidence            36777777765  223467888888898866554432211           11122210 00111111        6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-CCc----E
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-VPD----I  155 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~pD----i  155 (284)
                      ++.++.  .++.+|+++..++..|.+ +|++.+++|.++|++||+++|+||+|++|.+.|.........+. .||    +
T Consensus       153 ~~~l~~--~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~  229 (391)
T 3dzz_A          153 EEKLAT--PSVRMMVFCNPHNPIGYA-WSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSL  229 (391)
T ss_dssp             HHHHTS--TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEE
T ss_pred             HHHHhc--cCceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEE
Confidence            888852  457888887778888864 57788999999999999999999999998887753334444432 378    5


Q ss_pred             EEeccccc-CCcceeEEEec-HHHHHhchh--------------------------------hhhHHHHHHHHHHHHHh-
Q psy11784        156 ITVGKPMG-NGMPIGAVITS-RKIAESLNC--------------------------------LDDNRPSGKYLVRPLGI-  200 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~~-~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~-  200 (284)
                      .+++|+++ +|+++|+++++ +++++.+..                                .++++++.+++.+.|++ 
T Consensus       230 ~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~  309 (391)
T 3dzz_A          230 ISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKE  309 (391)
T ss_dssp             ECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            57899998 78999999997 888776543                                22455667777788876 


Q ss_pred             c---------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +         .+++.++.+........++++.|+ ++||++.++..+    .+++|++++  ++++++++++++|.++++
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~  387 (391)
T 3dzz_A          310 VPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQGVL  387 (391)
T ss_dssp             CTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            3         344445665321235778999996 899999986432    378999876  699999999999999987


Q ss_pred             HH
Q psy11784        267 SL  268 (284)
Q Consensus       267 ~~  268 (284)
                      ++
T Consensus       388 ~~  389 (391)
T 3dzz_A          388 NL  389 (391)
T ss_dssp             TC
T ss_pred             Hh
Confidence            64

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.88  E-value=2e-20  Score=173.04  Aligned_cols=243  Identities=14%  Similarity=0.108  Sum_probs=163.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +||++.+++....  ...+|+....+||+....+....+..          +..+|....  ..+.-+        ++++
T Consensus       118 ~~ai~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~~g~~----------~~~v~~~~~--~~~~~d--------~~~l  175 (428)
T 1iay_A          118 TGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRTGVQ----------LIPIHCESS--NNFKIT--------SKAV  175 (428)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTTCCE----------EEEECCCTT--TTTCCC--------HHHH
T ss_pred             HHHHHHHHHHhCC--CCCeEEEccCCCcchHHHHHHhcCCE----------EEEeecCCc--cCCcCC--------HHHH
Confidence            3677777776642  23579999999998765332222211          112332110  011112        5677


Q ss_pred             HHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-------C
Q psy11784         81 RNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-------G  150 (284)
Q Consensus        81 ~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-------g  150 (284)
                      ++.++.   ...++++|++...++..|.. .|++++++|.++|++||+++|+||+|+++++.|..+.....+       +
T Consensus       176 ~~~l~~~~~~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~  254 (428)
T 1iay_A          176 KEAYENAQKSNIKVKGLILTNPSNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTY  254 (428)
T ss_dssp             HHHHHHHHHTTCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTT
T ss_pred             HHHHHHHHhcCCceEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccccc
Confidence            777763   23457877776656667764 689999999999999999999999999876655311121111       2


Q ss_pred             CCCc----EEEeccccc-CCcceeEEEe-cHHHHHhchh--------------------------------hhhHHHHHH
Q psy11784        151 AVPD----IITVGKPMG-NGMPIGAVIT-SRKIAESLNC--------------------------------LDDNRPSGK  192 (284)
Q Consensus       151 ~~pD----iv~~sK~l~-~G~p~gav~~-~~~i~~~~~~--------------------------------l~~~~~~~~  192 (284)
                      +.+|    +.++||+++ .|+++|++++ ++++++.+..                                .++++++.+
T Consensus       255 ~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~  334 (428)
T 1iay_A          255 CNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHK  334 (428)
T ss_dssp             SCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            3477    568999998 7899999999 6777776543                                113445667


Q ss_pred             HHHHHHHhc--------cCceeEEEEeccc-----HHHHHHHHHHHHC-CcEEeecCCC----CCEEEEEcCCCCCHHHH
Q psy11784        193 YLVRPLGIN--------LHIFWCLILLSIT-----YYLYRYTRRMKEA-KIIVANEGEY----GNVLLFLPAMCLTTENV  254 (284)
Q Consensus       193 ~l~~~L~~~--------~G~~~~i~~~~~~-----~~~~~~~~~l~~~-Gv~~~~~~~~----~~~lr~~p~l~~t~~~i  254 (284)
                      ++.+.|+++        .|+++++++....     .....+++.|+++ ||++.++..+    .+++|++++ .++++++
T Consensus       335 ~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i  413 (428)
T 1iay_A          335 HFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTV  413 (428)
T ss_dssp             HHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHH
T ss_pred             HHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHH
Confidence            777777764        4556777773210     2456789999986 9999987543    468999988 6899999


Q ss_pred             HHHHHHHHHHHHH
Q psy11784        255 LFIVSTLNRIFTS  267 (284)
Q Consensus       255 d~~~~~l~~~l~~  267 (284)
                      ++++++|++++++
T Consensus       414 ~~~~~~l~~~l~~  426 (428)
T 1iay_A          414 DIALARIRRFVGV  426 (428)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.87  E-value=3.2e-21  Score=175.02  Aligned_cols=238  Identities=11%  Similarity=0.163  Sum_probs=165.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++..  .....+|++...+||+....+..... .          +..+|.+..  ..+.-|        .+++
T Consensus        91 ~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~-~----------~~~v~~~~~--~~~~~d--------~~~l  147 (375)
T 3op7_A           91 TGANLLVLYSL--IEPGDHVISLYPTYQQLYDIPKSLGA-E----------VDLWQIEEE--NGWLPD--------LEKL  147 (375)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEEESSCTHHHHHHHHTTC-E----------EEEEEEEGG--GTTEEC--------HHHH
T ss_pred             HHHHHHHHHHh--cCCCCEEEEeCCCchhHHHHHHHcCC-E----------EEEEecccc--CCCCCC--------HHHH
Confidence            36777777755  22346789999999986554432211 1          111221110  001111        6777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecc
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGK  160 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK  160 (284)
                      ++.+.   +++++|++++.++..|. ..|++++++|.++|++||+++|+||+|+++++.+. ....+.++..+++.++||
T Consensus       148 ~~~l~---~~~~~v~~~~~~nptG~-~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~i~~~s~sK  222 (375)
T 3op7_A          148 RQLIR---PTTKMICINNANNPTGA-VMDRTYLEELVEIASEVGAYILSDEVYRSFSELDV-PSIIEVYDKGIAVNSLSK  222 (375)
T ss_dssp             HHHCC---TTCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCC-CCHHHHCTTEEEEEESSS
T ss_pred             HHhhc---cCCeEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccccccccCC-CchhhhcCCEEEEeEChh
Confidence            77764   46888999998888886 45889999999999999999999999998876543 333455666788889999


Q ss_pred             ccc-CCcceeEEEecHHHHHhchh---------------------------hh----hHHHHHHHHHHHHHhc-------
Q psy11784        161 PMG-NGMPIGAVITSRKIAESLNC---------------------------LD----DNRPSGKYLVRPLGIN-------  201 (284)
Q Consensus       161 ~l~-~G~p~gav~~~~~i~~~~~~---------------------------l~----~~~~~~~~l~~~L~~~-------  201 (284)
                      +++ +|+++|++++++++++.+..                           ++    +++++.+++.+.|++.       
T Consensus       223 ~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  302 (375)
T 3op7_A          223 TYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIR  302 (375)
T ss_dssp             SSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECC
T ss_pred             hcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec
Confidence            998 78999999999999887654                           11    2345566666666653       


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                        .|.+..+.+ +......++++.++ ++||++.++..+  .+++|+.  +..+++++++++++|.++++++.
T Consensus       303 ~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~--~~~~~~~i~~~l~~l~~~l~~~~  372 (375)
T 3op7_A          303 PAVVSTSFVKI-AVDMPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLG--FACEQETLIKGLEKLSQFLRRFD  372 (375)
T ss_dssp             CSSSSCEEEEE-CCSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEC--CCSCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCCeEEEeEEc-CCCCCHHHHHHHHHHhCCEEEeChhhhCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHHHh
Confidence              334445555 33334667888874 789999987543  4789995  55677999999999999987654

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.87  E-value=9.8e-21  Score=173.33  Aligned_cols=184  Identities=18%  Similarity=0.232  Sum_probs=142.6

Q ss_pred             HHHHHHHHHhcCC---CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cC-ccccCccccccccCC
Q psy11784         77 AQAARNIMEAHRD---NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GM-GRSGSHFWAFQTQGA  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~---~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~-gr~G~~~~a~~~~g~  151 (284)
                      .+++++.++...+   ++++|++++.++..|.+.+    +++|.++|++||+++|+||+|. |+ +++|. .+ ....++
T Consensus       161 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~-~~-~~~~~~  234 (401)
T 1fc4_A          161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGR-GS-HEYCDV  234 (401)
T ss_dssp             HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSC-CH-HHHTTC
T ss_pred             HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cc-HHHcCC
Confidence            5677777763222   5889999999999998876    9999999999999999999994 88 45675 32 334555


Q ss_pred             CC--cEE--EecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHH
Q psy11784        152 VP--DII--TVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       152 ~p--Div--~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~  195 (284)
                      .+  |++  +++|+++++. .|++++++++++.+..                                .++++++++++.
T Consensus       235 ~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~  313 (401)
T 1fc4_A          235 MGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFR  313 (401)
T ss_dssp             TTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            44  777  8899997654 5999999988776532                                225566777888


Q ss_pred             HHHHhc-------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC-----CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        196 RPLGIN-------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY-----GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       196 ~~L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-----~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      +.|+++       .|.++++.+ +......++.+.|.++||++.++...     .+.+|+.++..+|++++++++++|++
T Consensus       314 ~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  392 (401)
T 1fc4_A          314 EQMSAAGFTLAGADHAIIPVML-GDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTR  392 (401)
T ss_dssp             HHHHHTTCCBCCSSSSEEEEEE-ECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcccCCCCCEEEEEc-CChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            888764       466777777 33345778999999999999876432     35899999999999999999999999


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      +++++
T Consensus       393 ~~~~~  397 (401)
T 1fc4_A          393 IGKQL  397 (401)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98765

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.87  E-value=1.5e-20  Score=175.66  Aligned_cols=240  Identities=13%  Similarity=0.137  Sum_probs=166.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++...  .....|++.+.+|||....+.... ..          +..+|...  .   +.+        .++|
T Consensus       150 ~~al~~~~~~l~--~~Gd~Vlv~~p~y~~~~~~~~~~g-~~----------~~~v~~~~--~---g~d--------~~~L  203 (448)
T 3aow_A          150 QQALDLIGRVFL--NPGDIVVVEAPTYLAALQAFNFYE-PQ----------YIQIPLDD--E---GMK--------VEIL  203 (448)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTC-CE----------EEEEEEET--T---EEC--------HHHH
T ss_pred             HHHHHHHHHHHc--CCCCEEEEeCCChHHHHHHHHHcC-CE----------EEEeccCC--C---CCC--------HHHH
Confidence            367777777652  233679999999999766543321 11          11122211  0   011        5777


Q ss_pred             HHHHHh---cCCCeeEEEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc---cccccccCCCC
Q psy11784         81 RNIMEA---HRDNIATLICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH---FWAFQTQGAVP  153 (284)
Q Consensus        81 ~~~i~~---~~~~vaavi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~---~~a~~~~g~~p  153 (284)
                      ++.++.   ...++++|++.|. ++..|. .++.+++++|.++|++||+++|+||+|+++.+.|..   +...+..+...
T Consensus       204 ~~~l~~~~~~~~~~k~v~~~~~~~NPtG~-~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi  282 (448)
T 3aow_A          204 EEKLKELKSQGKKVKVVYTVPTFQNPAGV-TMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVI  282 (448)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEE
T ss_pred             HHHHhhhhccCCCCeEEEECCCCCCCcCC-CCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEE
Confidence            777751   2235888877775 444665 478999999999999999999999999988665541   22333334456


Q ss_pred             cEEEecccccCCcceeEEEecHHHHHhchh--------------------h-------------hhHHHHHHHHHHHHHh
Q psy11784        154 DIITVGKPMGNGMPIGAVITSRKIAESLNC--------------------L-------------DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       154 Div~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------l-------------~~~~~~~~~l~~~L~~  200 (284)
                      ++.+|||.++.|+++|++++++++++.+..                    +             +.++++.+++.+.|++
T Consensus       283 ~~~S~SK~~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  362 (448)
T 3aow_A          283 YLGTFSKILAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEE  362 (448)
T ss_dssp             EEEESTTTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEccchhhccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778999999989999999999999887654                    1             1233556677777764


Q ss_pred             c-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC------CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        201 N-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY------GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       201 ~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .           .|+++++.+ +......++++.|.++||++.|+..+      .+++|++++. .++++|++++++|.+
T Consensus       363 ~~~~g~~~~~p~~g~~~~v~~-~~~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~  440 (448)
T 3aow_A          363 FMPEGVKWTKPEGGMFIWVTL-PDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAE  440 (448)
T ss_dssp             HCCTTCEECCCSBSSEEEEEC-STTCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHH
T ss_pred             hCCCCeEEeCCCccEEEEEEc-CCCCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHH
Confidence            1           356667776 33234678999999999999986432      4789999876 489999999999999


Q ss_pred             HHHHHh
Q psy11784        264 IFTSLQ  269 (284)
Q Consensus       264 ~l~~~~  269 (284)
                      ++++..
T Consensus       441 ~l~~~~  446 (448)
T 3aow_A          441 TIKEEL  446 (448)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            997764

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.87  E-value=4.6e-21  Score=177.31  Aligned_cols=239  Identities=13%  Similarity=0.120  Sum_probs=163.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCc------CCCCCCCchHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTY------RGEFSADDPQAAQ   74 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~   74 (284)
                      +||++.+++....  ...+|++...+|||....+.... ..          +..+|....-      ...+..|      
T Consensus       111 ~~a~~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g-~~----------~~~~~~~~~~~~~~~~~~~~~~d------  171 (429)
T 1yiz_A          111 YEALYATIQGHVD--EGDEVIIIEPFFDCYEPMVKAAG-GI----------PRFIPLKPNKTGGTISSADWVLD------  171 (429)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTT-CE----------EEEEECBCCCSSSSEEGGGCBCC------
T ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcC-CE----------EEEEeCCcccccccccccCcccC------
Confidence            4688888887632  23679999999999765543221 11          1112221100      0011112      


Q ss_pred             HHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccc----ccC
Q psy11784         75 KYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQ----TQG  150 (284)
Q Consensus        75 ~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~----~~g  150 (284)
                        +++|++.++   +++++|++++.++..|.+ +|++++++|.++|++||+++|+||+|++|++.|.......    ..+
T Consensus       172 --~~~l~~~l~---~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  245 (429)
T 1yiz_A          172 --NNELEALFN---EKTKMIIINTPHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWE  245 (429)
T ss_dssp             --HHHHHHHCC---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGG
T ss_pred             --HHHHHHHhc---cCceEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcC
Confidence              677777664   468899999888888865 5789999999999999999999999999877664222222    234


Q ss_pred             CCCcEEEeccccc-CCcceeEEEecHHHHHhchh--------------------hhh------------------HHHHH
Q psy11784        151 AVPDIITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------LDD------------------NRPSG  191 (284)
Q Consensus       151 ~~pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l~~------------------~~~~~  191 (284)
                      ..+++.+++|.++ +|+|+|++++++++++.+..                    ++.                  ++++.
T Consensus       246 ~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  325 (429)
T 1yiz_A          246 RTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKR  325 (429)
T ss_dssp             GEEEEEEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHH
T ss_pred             ceEEEecchhccCCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHH
Confidence            4556778999998 68999999999998876643                    212                  23345


Q ss_pred             HHHHHHHHhc--------cCceeEEEEeccc-----------HHHHHHHHHHH-HCCcEEeecCCC---------CCEEE
Q psy11784        192 KYLVRPLGIN--------LHIFWCLILLSIT-----------YYLYRYTRRMK-EAKIIVANEGEY---------GNVLL  242 (284)
Q Consensus       192 ~~l~~~L~~~--------~G~~~~i~~~~~~-----------~~~~~~~~~l~-~~Gv~~~~~~~~---------~~~lr  242 (284)
                      +++.+.|++.        .|+++++++....           ....++++.|. ++||++.++..+         .+++|
T Consensus       326 ~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iR  405 (429)
T 1yiz_A          326 DYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVR  405 (429)
T ss_dssp             HHHHHHHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEE
T ss_pred             HHHHHHHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEE
Confidence            5566666543        4667777774210           24567888887 789999876432         57999


Q ss_pred             EEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        243 FLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       243 ~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ++++  .++++|++++++|.++++
T Consensus       406 is~~--~~~e~i~~~l~~l~~~l~  427 (429)
T 1yiz_A          406 YCFF--KKDENLQKAAEILRKWKG  427 (429)
T ss_dssp             EECC--SCHHHHHHHHHHHHHHSC
T ss_pred             EEec--CCHHHHHHHHHHHHHhcc
Confidence            9987  499999999999988753

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.87  E-value=1.4e-20  Score=172.40  Aligned_cols=186  Identities=13%  Similarity=0.154  Sum_probs=137.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC-----C
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG-----A  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g-----~  151 (284)
                      ++++++.++.   ++.+|++...++..|. .+|.+.+++|.++|++||+++|+||+|++|++.|+........+     .
T Consensus       169 ~~~l~~~l~~---~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~  244 (407)
T 3nra_A          169 LTGLEEAFKA---GARVFLFSNPNNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAEN  244 (407)
T ss_dssp             HHHHHHHHHT---TCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGG
T ss_pred             HHHHHHHHhh---CCcEEEEcCCCCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCc
Confidence            6788888873   4555655555777776 55889999999999999999999999998877765233333332     2


Q ss_pred             CCcEEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHH
Q psy11784        152 VPDIITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       152 ~pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~  199 (284)
                      ..++.++||.++ .|+++|++++++++++.+..                               .++.+++.+++.+.|+
T Consensus       245 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~  324 (407)
T 3nra_A          245 VVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLR  324 (407)
T ss_dssp             EEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence            244567899998 78999999999999887654                               2245566677777777


Q ss_pred             hc---------cCceeEEEEecccHHHHHHHHHHHH-CCcEEeecCC----CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        200 IN---------LHIFWCLILLSITYYLYRYTRRMKE-AKIIVANEGE----YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       200 ~~---------~G~~~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      ++         .|.++++.+........++++.|++ +||++.++..    ..+++|++++.  |+++|++++++|.+++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~~  402 (407)
T 3nra_A          325 GCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAARRIVTLV  402 (407)
T ss_dssp             TSTTCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred             cCCCceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHH
Confidence            64         2455555553213456788898875 5999998653    34789998774  9999999999999998


Q ss_pred             HHH
Q psy11784        266 TSL  268 (284)
Q Consensus       266 ~~~  268 (284)
                      +++
T Consensus       403 ~~~  405 (407)
T 3nra_A          403 ERY  405 (407)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.86  E-value=2.7e-20  Score=170.66  Aligned_cols=240  Identities=13%  Similarity=0.139  Sum_probs=165.6

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++....  ...+|++...+||+....+... +..          +..+|....     ..+        .++|
T Consensus       108 t~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-g~~----------~~~v~~~~~-----~~d--------~~~l  161 (407)
T 2zc0_A          108 TGALDLLGRVLID--PGDVVITENPSYINTLLAFEQL-GAK----------IEGVPVDND-----GMR--------VDLL  161 (407)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTT-TCE----------EEEEEEETT-----EEC--------HHHH
T ss_pred             HHHHHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHc-CCE----------EEEcccCCC-----CCC--------HHHH
Confidence            4688888887732  2367999999999976543321 111          112222110     011        6777


Q ss_pred             HHHHHh---cCCCeeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc---CCCC
Q psy11784         81 RNIMEA---HRDNIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ---GAVP  153 (284)
Q Consensus        81 ~~~i~~---~~~~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~---g~~p  153 (284)
                      ++.++.   ...++++|+ ++..++..|. ..|.+++++|.++|++||+++|+||+|+++.+.|........+   +...
T Consensus       162 ~~~l~~~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i  240 (407)
T 2zc0_A          162 EEKIKELKAKGQKVKLIYTIPTGQNPMGV-TMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVI  240 (407)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEE
T ss_pred             HHHHHhhhcccCCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEE
Confidence            777762   223577875 4556677786 4578999999999999999999999999886666422223223   2234


Q ss_pred             cEEEecccccCCcceeEEEecHHHHHhchh--------------------h-------h-------hHHHHHHHHHHHHH
Q psy11784        154 DIITVGKPMGNGMPIGAVITSRKIAESLNC--------------------L-------D-------DNRPSGKYLVRPLG  199 (284)
Q Consensus       154 Div~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------l-------~-------~~~~~~~~l~~~L~  199 (284)
                      ++.++||.++.|+++|++++++++++.+..                    +       +       +++++.+++.+.|+
T Consensus       241 ~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  320 (407)
T 2zc0_A          241 VAGTLSKVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALE  320 (407)
T ss_dssp             EEEESTTTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred             EEcccccccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566899999988999999999998876643                    1       1       22345667777776


Q ss_pred             hc----------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecCC------CCCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        200 IN----------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGE------YGNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       200 ~~----------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      +.          .|+++++.+ +......++++.|.++ ||++.++..      ..+++|++++.. |++++++++++|.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~  398 (407)
T 2zc0_A          321 NHLPNAEFTKPIAGMFVMFFL-PEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLA  398 (407)
T ss_dssp             HHCTTSCBCCCSBSSEEEEEC-STTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHH
T ss_pred             HhCCCCEEecCCCcEEEEEEc-CCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHH
Confidence            52          355666766 3323467899999988 999987643      247899998877 8999999999999


Q ss_pred             HHHHHHh
Q psy11784        263 RIFTSLQ  269 (284)
Q Consensus       263 ~~l~~~~  269 (284)
                      ++++++.
T Consensus       399 ~~l~~~~  405 (407)
T 2zc0_A          399 KLYKEKF  405 (407)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9988763

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.86  E-value=3.6e-20  Score=168.63  Aligned_cols=225  Identities=15%  Similarity=0.173  Sum_probs=160.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      |+|++.|++..   .++...+.++..+|+.+..+....+..          +..+|.        .+         .+++
T Consensus       109 t~a~~~~~~~~---~~~gd~v~~~~~~~~~~~~~~~~~g~~----------~~~~~~--------~d---------~~~l  158 (384)
T 1bs0_A          109 FAANQAVIAAM---MAKEDRIAADRLSHASLLEAASLSPSQ----------LRRFAH--------ND---------VTHL  158 (384)
T ss_dssp             HHHHHHHHHHH---CCTTCEEEEETTCCHHHHHHHHTSSSE----------EEEECT--------TC---------HHHH
T ss_pred             HHHHHHHHHHh---CCCCcEEEEcccccHHHHHHHHHcCCC----------EEEeCC--------CC---------HHHH
Confidence            36677777653   455566778888898776555443221          112331        11         5778


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cC-ccccCccccccccCCCCcEE--
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GM-GRSGSHFWAFQTQGAVPDII--  156 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~-gr~G~~~~a~~~~g~~pDiv--  156 (284)
                      ++.++...+..++|+++++++..|.+.+    +++|.++|++||+++|+||+|. |+ +++|. .+ .+.++..||++  
T Consensus       159 ~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~-~~~~~~~~di~~~  232 (384)
T 1bs0_A          159 ARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGR-GS-CWLQKVKPELLVV  232 (384)
T ss_dssp             HHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGC-CH-HHHTTCCCSEEEE
T ss_pred             HHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCC-ch-HHhcCCCCcEEEe
Confidence            8888754434789999999999998887    9999999999999999999996 53 55665 32 24566779988  


Q ss_pred             EecccccCCcceeEEEecHHHHHhchh----------------------h------------hhHHHHHHHHHHHHHhc-
Q psy11784        157 TVGKPMGNGMPIGAVITSRKIAESLNC----------------------L------------DDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       157 ~~sK~l~~G~p~gav~~~~~i~~~~~~----------------------l------------~~~~~~~~~l~~~L~~~-  201 (284)
                      +++|.++.  +.|++++++++++.+..                      +            ++++++.+++.+.|+++ 
T Consensus       233 s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  310 (384)
T 1bs0_A          233 TFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP  310 (384)
T ss_dssp             ESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             eccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            89999973  44999999988765532                      1            13344556666666653 


Q ss_pred             ------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC-----CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY-----GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       202 ------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-----~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                            .|.++++.+ +......++.+.|.++||.+.++...     .+.+|+.++..+|++++++++++|+++
T Consensus       311 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          311 FTLADSCSAIQPLIV-GDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             CEECSCCSSBCCEEE-ESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             CcccCCCCCEEEEEe-CCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence                  345566666 33345778999999999999986532     368999999999999999999999764

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.86  E-value=4.5e-20  Score=168.85  Aligned_cols=182  Identities=15%  Similarity=0.222  Sum_probs=141.5

Q ss_pred             HHHHHHHHHhcCC-CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCccccccccCCC-
Q psy11784         77 AQAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQGAV-  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~-~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~g~~-  152 (284)
                      .++|++.++...+ ++++|+++++++..|...+    +++|.++|++||+++|+||+|. | +++++. .+ .+.+++. 
T Consensus       159 ~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~-~~-~~~~~~~~  232 (398)
T 3a2b_A          159 MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGA-GT-ASHFGLND  232 (398)
T ss_dssp             HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGC-CH-HHHHTCGG
T ss_pred             HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCC-ch-HhhcCCCc
Confidence            6788888875433 6889999999998898776    9999999999999999999996 4 455554 22 3444554 


Q ss_pred             -CcEE--EecccccC-CcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHH
Q psy11784        153 -PDII--TVGKPMGN-GMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       153 -pDiv--~~sK~l~~-G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~  196 (284)
                       +|++  +++|.++. |   |++++++++++.+..                                .++++++.+++.+
T Consensus       233 ~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~  309 (398)
T 3a2b_A          233 DVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKA  309 (398)
T ss_dssp             GCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred             CCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence             6888  89999984 4   899999988776532                                2245666777777


Q ss_pred             HHHhc-------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC-----CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        197 PLGIN-------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY-----GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       197 ~L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-----~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      .|+++       .|.++++.+ +......++++.|+++||++.++..+     .+.+|+.++..+|++++++++++|.++
T Consensus       310 ~L~~~g~~~~~~~g~~~~~~~-~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~  388 (398)
T 3a2b_A          310 QLLDHGFDLGATESPILPIFI-RSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKV  388 (398)
T ss_dssp             HHHHTTCCBCSCCSSEEEEEC-CCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCcCCCCCCEEEEEc-CCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            77764       466777776 34445778999999999999987543     478999999889999999999999999


Q ss_pred             HHHH
Q psy11784        265 FTSL  268 (284)
Q Consensus       265 l~~~  268 (284)
                      ++++
T Consensus       389 l~~~  392 (398)
T 3a2b_A          389 FKQA  392 (398)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            8765

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.86  E-value=6.8e-21  Score=173.36  Aligned_cols=238  Identities=16%  Similarity=0.133  Sum_probs=160.2

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCC---CCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFP---DTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   77 (284)
                      ++|++.+++..  .....+|++.+.+||+....+... +..          +..+|.+   +.    +..|        .
T Consensus        88 ~~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~-g~~----------~~~v~~~~~~~~----~~~d--------~  142 (381)
T 1v2d_A           88 TEALYVLLQSL--VGPGDEVVVLEPFFDVYLPDAFLA-GAK----------ARLVRLDLTPEG----FRLD--------L  142 (381)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHT-TCE----------EEEEECEEETTE----EECC--------H
T ss_pred             HHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHc-CCE----------EEEEeCCCCCcc----CCcC--------H
Confidence            46888888876  334568999999999976543221 111          1123321   11    1111        5


Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcc--ccCccccccccCCCCcE
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGR--SGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr--~G~~~~a~~~~g~~pDi  155 (284)
                      ++|++.+.   +++++|++++.++..|.+ +|.+++++|.++|++||+++|+||+|++|..  .+...... ..+..+++
T Consensus       143 ~~l~~~l~---~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~-~~~~~~~~  217 (381)
T 1v2d_A          143 SALEKALT---PRTRALLLNTPMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF-APERTFTV  217 (381)
T ss_dssp             HHHHTTCC---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH-CTTTEEEE
T ss_pred             HHHHHhcC---cCCEEEEECCCCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh-cCCCEEEE
Confidence            66666553   458889988888877875 5789999999999999999999999998743  22212222 34666777


Q ss_pred             EEeccccc-CCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        156 ITVGKPMG-NGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      .+++|.++ .|+++|++++++++++.+..                                 .++++++.+++.+.|++.
T Consensus       218 ~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  297 (381)
T 1v2d_A          218 GSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM  297 (381)
T ss_dssp             EEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eechhhcCCcccceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            89999998 68999999999888776543                                 114455667777777664


Q ss_pred             --------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 --------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE------YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 --------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                              .|+++++.+. ..   . +.+.+.++||++.++..      ..+++|++++.  +++++++++++|.+++++
T Consensus       298 g~~~~~~~~~~~~~~~~~-~~---~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~  370 (381)
T 1v2d_A          298 GLRVYVPEGTYFLMAELP-GW---D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNS  370 (381)
T ss_dssp             TCCEECCSBSSEEEEECT-TC---C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC--
T ss_pred             CCEecCCCcceEEEEecC-hH---h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence                    3556666663 22   1 66677899999988643      24699999876  999999999999999988


Q ss_pred             Hhhccchh
Q psy11784        268 LQMDSSPA  275 (284)
Q Consensus       268 ~~~~~~~~  275 (284)
                      .++..+.+
T Consensus       371 ~r~~~~~~  378 (381)
T 1v2d_A          371 PREAEGGA  378 (381)
T ss_dssp             --------
T ss_pred             cccccCCC
Confidence            76655443

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.86  E-value=2.7e-20  Score=169.70  Aligned_cols=239  Identities=9%  Similarity=0.085  Sum_probs=164.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++...  ....+|++.+.+||+....+... +..          +..+|....  ..+..+        .++|
T Consensus       100 ~~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-g~~----------~~~v~~~~~--~~~~~d--------~~~l  156 (388)
T 1j32_A          100 KQSIFNLMLAMI--EPGDEVIIPAPFWVSYPEMVKLA-EGT----------PVILPTTVE--TQFKVS--------PEQI  156 (388)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-TCE----------EEEECCCGG--GTTCCC--------HHHH
T ss_pred             HHHHHHHHHHhc--CCCCEEEEcCCCChhHHHHHHHc-CCE----------EEEecCCcc--cCCCCC--------HHHH
Confidence            467888887763  23457999999999866543321 111          122332210  011111        5777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc---cccccc--cCCCCcE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH---FWAFQT--QGAVPDI  155 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~---~~a~~~--~g~~pDi  155 (284)
                      ++.++   +++++|++++.++..|.+ +|++.+++|.++|++||+++|+||+|++|.+.|..   +.....  ++..+++
T Consensus       157 ~~~l~---~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (388)
T 1j32_A          157 RQAIT---PKTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVC  232 (388)
T ss_dssp             HHHCC---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEE
T ss_pred             HHhcC---cCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEE
Confidence            77764   358888888878877875 57899999999999999999999999988665531   112211  3455667


Q ss_pred             EEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        156 ITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      .+++|.++ .|+++|++++++++++.+..                               .++++++.+++.+.|+++  
T Consensus       233 ~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  312 (388)
T 1j32_A          233 SGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPG  312 (388)
T ss_dssp             EESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             eechhccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            78999998 68999999999998776543                               124566777788888764  


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHHH-CCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMKE-AKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                             .|++.++.+........++++.|++ +||++.++..+  .+.+|++++  ++++++++++++|.++++++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          313 LECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             CBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence                   2333344442102246788889986 79999986533  478999876  69999999999999988764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.86  E-value=2.2e-20  Score=169.92  Aligned_cols=237  Identities=11%  Similarity=0.073  Sum_probs=158.6

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++...  ....+|++...+||+....+..... .          +..+|....-...+.-|        ++++
T Consensus       100 ~~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g~-~----------~~~~~~~~~~~~~~~~d--------~~~l  158 (391)
T 4dq6_A          100 IPAISLLINELT--KANDKIMIQEPVYSPFNSVVKNNNR-E----------LIISPLQKLENGNYIMD--------YEDI  158 (391)
T ss_dssp             HHHHHHHHHHHS--CTTCEEEECSSCCTHHHHHHHHTTC-E----------EEECCCEECTTSCEECC--------HHHH
T ss_pred             HHHHHHHHHHhC--CCCCEEEEcCCCCHHHHHHHHHcCC-e----------EEeeeeeecCCCceEee--------HHHH
Confidence            367777777652  2335788888899887655443221 0          11222210000111112        6778


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-----CCCCcE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-----GAVPDI  155 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-----g~~pDi  155 (284)
                      ++.++.    +.+|+++..++..|. .+|++.+++|.++|++||+++|+||+|++|.+.|.........     +....+
T Consensus       159 ~~~l~~----~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  233 (391)
T 4dq6_A          159 ENKIKD----VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITC  233 (391)
T ss_dssp             HHHCTT----EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEE
T ss_pred             HHHhhc----CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEE
Confidence            877762    777877777777776 4577889999999999999999999999987777522222221     122335


Q ss_pred             EEeccccc-CCcceeEEEecH-HHHHhchh--------------------------------hhhHHHHHHHHHHHHHh-
Q psy11784        156 ITVGKPMG-NGMPIGAVITSR-KIAESLNC--------------------------------LDDNRPSGKYLVRPLGI-  200 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~~~-~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~-  200 (284)
                      .+++|+++ +|+++|++++++ ++++.+..                                .++++++.+++.+.|++ 
T Consensus       234 ~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~  313 (391)
T 4dq6_A          234 MAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINEN  313 (391)
T ss_dssp             ECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            57899998 789999999875 77765543                                12455666777777765 


Q ss_pred             c---------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      +         .+++.++++........++++.|+++ ||++.++..+    .+++|++++  ++++++++++++|.+++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          314 MPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKNAI  390 (391)
T ss_dssp             CTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred             CCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence            2         23344466632133577899999998 9999986432    378999877  69999999999998876

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.86  E-value=2.9e-20  Score=172.03  Aligned_cols=242  Identities=15%  Similarity=0.158  Sum_probs=163.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++...  ....+|++...+||+....+.... .+          +..+|....     ..+        +++|
T Consensus       119 ~~al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~g-~~----------~~~v~~~~~-----~~d--------~~~l  172 (425)
T 1vp4_A          119 QQALDLIGKLFL--DDESYCVLDDPAYLGAINAFRQYL-AN----------FVVVPLEDD-----GMD--------LNVL  172 (425)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTT-CE----------EEEEEEETT-----EEC--------HHHH
T ss_pred             HHHHHHHHHHhC--CCCCEEEEeCCCcHHHHHHHHHcC-CE----------EEEeccCCC-----CCC--------HHHH
Confidence            356777777542  223679999999999766544321 11          111222110     011        6777


Q ss_pred             HHHHHhc-----CCCeeEEEE-cceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC---C
Q psy11784         81 RNIMEAH-----RDNIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG---A  151 (284)
Q Consensus        81 ~~~i~~~-----~~~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g---~  151 (284)
                      ++.++..     +.++++|++ ...++..|. .+|.+++++|.++|++||+++|+||+|++|.+.|........++   .
T Consensus       173 ~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  251 (425)
T 1vp4_A          173 ERKLSEFDKNGKIKQVKFIYVVSNFHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPER  251 (425)
T ss_dssp             HHHHHHHHHTTCGGGEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTT
T ss_pred             HHHHHhhhhcccCCCceEEEECCCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCC
Confidence            7777631     125788754 444555675 46889999999999999999999999998876664222222222   2


Q ss_pred             CCcEEEecccccCCcceeEEEecHHHHHhchh--------------------h-------------hhHHHHHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNGMPIGAVITSRKIAESLNC--------------------L-------------DDNRPSGKYLVRPL  198 (284)
Q Consensus       152 ~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------l-------------~~~~~~~~~l~~~L  198 (284)
                      ...+.++||.+++|+++|++++++++++.+..                    +             ++++++.+++.+.|
T Consensus       252 ~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L  331 (425)
T 1vp4_A          252 VVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNAL  331 (425)
T ss_dssp             EEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22345889999988999999999998876643                    1             13445666777777


Q ss_pred             Hh-------c------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC------CCEEEEEcCCCCCHHHHHHHHH
Q psy11784        199 GI-------N------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY------GNVLLFLPAMCLTTENVLFIVS  259 (284)
Q Consensus       199 ~~-------~------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~------~~~lr~~p~l~~t~~~id~~~~  259 (284)
                      ++       +      .|.++++.+. ......++++.|.++||++.++..+      .+++|++++.. |+++++++++
T Consensus       332 ~~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~  409 (425)
T 1vp4_A          332 EEYFSDIPGVKWVKSEGGLFIWLTLP-EGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIK  409 (425)
T ss_dssp             HHHSTTSTTCEECCCSBSSEEEEECC-TTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHH
T ss_pred             HHhCCCCCceEEecCCccEEEEEEcC-CCCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHH
Confidence            64       2      3455666663 2223457888999899999986432      47899998874 9999999999


Q ss_pred             HHHHHHHHHhhc
Q psy11784        260 TLNRIFTSLQMD  271 (284)
Q Consensus       260 ~l~~~l~~~~~~  271 (284)
                      +|.++++++.++
T Consensus       410 ~l~~~l~~~~~~  421 (425)
T 1vp4_A          410 RLREVVLEYGKE  421 (425)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999887544

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.85  E-value=1.7e-20  Score=170.40  Aligned_cols=233  Identities=14%  Similarity=0.087  Sum_probs=159.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +||++.+++...  ....+|++...+||+....+..... .          +..+|.++.    +..|        ++++
T Consensus        97 ~~a~~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g~-~----------~~~~~~~~~----~~~d--------~~~l  151 (376)
T 2dou_A           97 QEGLAHLLLALT--EPEDLLLLPEVAYPSYFGAARVASL-R----------TFLIPLRED----GLAD--------LKAV  151 (376)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEESSCCHHHHHHHHHTTC-E----------EEEECBCTT----SSBC--------GGGS
T ss_pred             HHHHHHHHHHhc--CCCCEEEECCCCcHhHHHHHHHcCC-E----------EEEeeCCCC----CCCC--------HHHH
Confidence            367777777652  2236799999999997765443211 1          112232111    1111        4556


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc---cCCCCcEEE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT---QGAVPDIIT  157 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~---~g~~pDiv~  157 (284)
                      ++.+.   +++++|+++..++..|.+ +|.+++++|.++|++||+++|+||+|++|.+.|........   .+....+.+
T Consensus       152 ~~~l~---~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  227 (376)
T 2dou_A          152 PEGVW---REAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFS  227 (376)
T ss_dssp             CHHHH---HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEE
T ss_pred             HHhhc---cCceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEec
Confidence            66664   347788887556667764 58899999999999999999999999988665531111222   233344568


Q ss_pred             eccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        158 VGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       158 ~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                      +||.++ +|+++|++++++++++.+..                               .++++++.+++.+.|++.    
T Consensus       228 ~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  307 (376)
T 2dou_A          228 LSKSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGVLSLL  307 (376)
T ss_dssp             HHHHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTTSEEC
T ss_pred             chhhcCChhheeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            999998 78999999999998876644                               113456667777777652    


Q ss_pred             ---cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        202 ---LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       202 ---~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                         .|+++++++. ......++++.|+++||++.++..+    .+++|++++.  +++++++++++|.+++
T Consensus       308 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          308 PPRATMYLWGRLP-EGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR--PLEELLEAAKRIREAL  375 (376)
T ss_dssp             CCCBSSEEEEECC-TTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred             CCCeeEEEEEECC-CCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence               3556677763 3234567999999999999986432    4799998764  8999999999998764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.85  E-value=4.7e-20  Score=168.12  Aligned_cols=239  Identities=15%  Similarity=0.170  Sum_probs=159.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++...  ....+|++.+.+|||....+.... ..          +..+|....  ..+.-|        .++|
T Consensus        97 ~~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g-~~----------~~~v~~~~~--~~~~~d--------~~~l  153 (389)
T 1gd9_A           97 NQAFLMGLSAFL--KDGEEVLIPTPAFVSYAPAVILAG-GK----------PVEVPTYEE--DEFRLN--------VDEL  153 (389)
T ss_dssp             THHHHHHHTTTC--CTTCEEEEEESCCTTHHHHHHHHT-CE----------EEEEECCGG--GTTCCC--------HHHH
T ss_pred             HHHHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHCC-CE----------EEEeccCCc--cCCCCC--------HHHH
Confidence            466666666541  233568888888888654432211 00          112332210  011111        6777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-CC-CCcE--E
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GA-VPDI--I  156 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-g~-~pDi--v  156 (284)
                      ++.++   +++++|+++..++..|.+ .|++.+++|.++|++||+++|+||+|+++.+.|........+ +. ..|+  .
T Consensus       154 ~~~l~---~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (389)
T 1gd9_A          154 KKYVT---DKTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVN  229 (389)
T ss_dssp             HHHCC---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEE
T ss_pred             HHhcC---cCceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEe
Confidence            77765   357888887777777764 678999999999999999999999999887665412222222 21 2354  4


Q ss_pred             Eeccccc-CCcceeEEEecHHHHHhchh--------------------h-------------hhHHHHHHHHHHHHHhc-
Q psy11784        157 TVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L-------------DDNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       157 ~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l-------------~~~~~~~~~l~~~L~~~-  201 (284)
                      +++|.++ .|+++|++++++++++.+..                    +             ++++++.+++.+.|+++ 
T Consensus       230 s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  309 (389)
T 1gd9_A          230 GFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMG  309 (389)
T ss_dssp             ESTTTTTCGGGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cChhhcCCcccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            7899998 68999999999998876654                    1             13445566677777664 


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                             .|+++++.+........++++.|+ ++||++.++..+    .+.+|+.++.  +++++++++++|.+++++.
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~~  386 (389)
T 1gd9_A          310 LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMERVLKER  386 (389)
T ss_dssp             CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred             CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence                   244455555211224678899998 899999986432    4689998774  9999999999999988653

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.85  E-value=8e-20  Score=167.14  Aligned_cols=242  Identities=13%  Similarity=0.100  Sum_probs=163.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +||++.+++...  ....+|++...+|||....+.... ..          +..+|.... .+.+..+        +++|
T Consensus        99 ~~a~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~g-~~----------~~~~~~~~~-~g~~~~d--------~~~l  156 (399)
T 1c7n_A           99 VPAVFNAVREFT--KPGDGVIIITPVYYPFFMAIKNQE-RK----------IIECELLEK-DGYYTID--------FQKL  156 (399)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEECSSCCTHHHHHHHTTT-CE----------EEECCCEEE-TTEEECC--------HHHH
T ss_pred             HHHHHHHHHHhc--CCCCEEEEcCCCcHhHHHHHHHcC-CE----------EEecccccC-CCCEEEc--------HHHH
Confidence            367777777552  224679999999999776554321 11          111222100 0001111        6778


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-----CCCCcE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-----GAVPDI  155 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-----g~~pDi  155 (284)
                      ++.++  ..++++|++...++..|. .+|++++++|.++|++||+++|+||+|++|++.|........+     +....+
T Consensus       157 ~~~l~--~~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  233 (399)
T 1c7n_A          157 EKLSK--DKNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITF  233 (399)
T ss_dssp             HHHHT--CTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEE
T ss_pred             HHHhc--cCCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEE
Confidence            88775  235778887666777776 5688999999999999999999999999987766422222222     223345


Q ss_pred             EEeccccc-CCcceeEEEec-HHHHHhchh--------------------------------hhhHHHHHHHHHHHHHh-
Q psy11784        156 ITVGKPMG-NGMPIGAVITS-RKIAESLNC--------------------------------LDDNRPSGKYLVRPLGI-  200 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~~-~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~-  200 (284)
                      .++||.++ +|+++|+++++ +++++.+..                                .++++++.+++.+.|++ 
T Consensus       234 ~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  313 (399)
T 1c7n_A          234 TAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVN  313 (399)
T ss_dssp             ECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            57899998 78999999997 567765533                                11355667777777776 


Q ss_pred             c---------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +         .|++.++++.........+++.|+ ++||++.++..+    .+.+|++++.  +++++++++++|.++++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~  391 (399)
T 1c7n_A          314 HPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA--PSSVIQESLERLNKALK  391 (399)
T ss_dssp             CTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc--CHHHHHHHHHHHHHHHH
Confidence            3         234445676311124667899998 689999986532    4789998775  48999999999999998


Q ss_pred             HHh
Q psy11784        267 SLQ  269 (284)
Q Consensus       267 ~~~  269 (284)
                      ++.
T Consensus       392 ~~~  394 (399)
T 1c7n_A          392 DLK  394 (399)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            874

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.85  E-value=1.1e-19  Score=166.47  Aligned_cols=238  Identities=16%  Similarity=0.149  Sum_probs=161.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++...  ....+|++...+||+....+.... ..          +..+|....  +  . |        .++|
T Consensus       101 ~~al~~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~g-~~----------~~~~~~~~~--~--~-d--------~~~l  154 (397)
T 2zyj_A          101 QQALDLVGKVFL--DEGSPVLLEAPSYMGAIQAFRLQG-PR----------FLTVPAGEE--G--P-D--------LDAL  154 (397)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTC-CE----------EEEEEEETT--E--E-C--------HHHH
T ss_pred             HHHHHHHHHHhC--CCCCEEEEeCCCcHHHHHHHHHcC-CE----------EEecCcCCC--C--C-C--------HHHH
Confidence            367777777652  223679999999999776544321 11          111222110  0  1 1        6788


Q ss_pred             HHHHHhcCCCeeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC------CCC
Q psy11784         81 RNIMEAHRDNIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG------AVP  153 (284)
Q Consensus        81 ~~~i~~~~~~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g------~~p  153 (284)
                      ++.++.  .++++|+ +...++..|.+ ++.+++++|.++|++||+++|+||+|++|++.|........++      ...
T Consensus       155 ~~~l~~--~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i  231 (397)
T 2zyj_A          155 EEVLKR--ERPRFLYLIPSFQNPTGGL-TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVI  231 (397)
T ss_dssp             HHHHHH--CCCSCEEECCBSCTTTCCB-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEE
T ss_pred             HHHHhh--cCCeEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEE
Confidence            888873  2456664 45556667764 6889999999999999999999999999877664222222222      223


Q ss_pred             cEEEecccccCCcceeEEEecHHHHHhchh--------------------h-----h-------hHHHHHHHHHHHHHh-
Q psy11784        154 DIITVGKPMGNGMPIGAVITSRKIAESLNC--------------------L-----D-------DNRPSGKYLVRPLGI-  200 (284)
Q Consensus       154 Div~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------l-----~-------~~~~~~~~l~~~L~~-  200 (284)
                      .+.+++|++++|+++|++++++++++.+..                    +     +       +++++.+++.+.|++ 
T Consensus       232 ~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (397)
T 2zyj_A          232 YLGSFSKVLSPGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE  311 (397)
T ss_dssp             EEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccccccceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355889999988999999999998876643                    1     1       223345556666654 


Q ss_pred             ----c------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC------CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        201 ----N------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE------YGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       201 ----~------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                          +      .|.++++++ +......++++.|.++||++.++..      ..+++|++++.. |++++++++++|.++
T Consensus       312 ~~~g~~~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~  389 (397)
T 2zyj_A          312 VPKEVRYTRPKGGMFVWMEL-PKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRA  389 (397)
T ss_dssp             SCTTSEECCCSBSSEEEEEC-STTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred             CCCCeEEccCCccEEEEEEc-CCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHH
Confidence                1      345566666 3223467899999999999998643      247899998875 999999999999999


Q ss_pred             HHHHh
Q psy11784        265 FTSLQ  269 (284)
Q Consensus       265 l~~~~  269 (284)
                      ++++.
T Consensus       390 l~~~~  394 (397)
T 2zyj_A          390 LKGLL  394 (397)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.85  E-value=3.8e-20  Score=170.36  Aligned_cols=239  Identities=12%  Similarity=0.096  Sum_probs=160.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++...  ....+|++...+||+....+..... .          +..+|....      .+    ....++++
T Consensus       109 ~~a~~~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~g~-~----------~~~~~~~~~------~~----~~~d~~~l  165 (412)
T 2x5d_A          109 KEGLAHLMLATL--DHGDTILVPNPSYPIHIYGAVIAGA-Q----------VRSVPLVPG------ID----FFNELERA  165 (412)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHHTC-E----------EEEEECSTT------SC----HHHHHHHH
T ss_pred             HHHHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHcCC-E----------EEEeecCCc------cC----CCCCHHHH
Confidence            367777777642  2236789999999987665432211 0          112232110      00    00114566


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc----cCCCCcEE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT----QGAVPDII  156 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~----~g~~pDiv  156 (284)
                      ++.+.   +++++|++...++..|. .+|.+++++|.++|++||+++|+||+|+++.+.|+.......    .+....+.
T Consensus       166 ~~~i~---~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  241 (412)
T 2x5d_A          166 IRESI---PKPRMMILGFPSNPTAQ-CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFF  241 (412)
T ss_dssp             HHTEE---SCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEE
T ss_pred             HHhcc---cCceEEEECCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEe
Confidence            66554   35666766433665676 468899999999999999999999999988765631222222    23334456


Q ss_pred             Eeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 TVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +++|.++ +|+++|++++++++++.+..                               .++++++.+++.+.|++.   
T Consensus       242 s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  321 (412)
T 2x5d_A          242 TLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREAGWM  321 (412)
T ss_dssp             ECC-CCSCTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCccccCCcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence            8999998 78999999999998876644                               124556677777777754   


Q ss_pred             -----cCceeEEEEecccH---HHHHHHHHHHH-CCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 -----LHIFWCLILLSITY---YLYRYTRRMKE-AKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 -----~G~~~~i~~~~~~~---~~~~~~~~l~~-~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                           .|+++++.+. ...   ....+++.|++ +||++.++..+    .+++|++++.  +++++++++++|.++++++
T Consensus       322 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~  398 (412)
T 2x5d_A          322 VENPKASMYVWAKIP-EPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAMFRAD  398 (412)
T ss_dssp             CCCCSBSSEEEEECC-TTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCeeeEEEEEcC-CccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence                 3667777773 221   46788888875 69999986432    4799999876  8999999999999999876


Q ss_pred             h
Q psy11784        269 Q  269 (284)
Q Consensus       269 ~  269 (284)
                      .
T Consensus       399 ~  399 (412)
T 2x5d_A          399 G  399 (412)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.85  E-value=6.9e-20  Score=168.79  Aligned_cols=240  Identities=13%  Similarity=0.127  Sum_probs=159.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCC-----Cc---CCCCCCCchHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPD-----TY---RGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~   72 (284)
                      ++|++.+++..  .....+|+....+||+....+..... .          +..+|...     ..   ...+.-|    
T Consensus       101 ~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~-~----------~~~~~~~~~~~~~G~~~~~~~~~~d----  163 (422)
T 3fvs_A          101 YGALFTAFQAL--VDEGDEVIIIEPFFDCYEPMTMMAGG-R----------PVFVSLKPGPIQNGELGSSSNWQLD----  163 (422)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-E----------EEEEECBCCCCCSSSCCBGGGSBCC----
T ss_pred             HHHHHHHHHHH--cCCCCEEEEcCCCchhhHHHHHHcCC-E----------EEEEecccccccccccccccCCCCC----
Confidence            36777777765  23446799999999997654443221 1          11122111     00   0011111    


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc---
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ---  149 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~---  149 (284)
                          .+++++.++   +++++|+++..++..|.+. |++.+++|.++|++||+++|+||+|++|.+.|........+   
T Consensus       164 ----~~~l~~~~~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  235 (422)
T 3fvs_A          164 ----PMELAGKFT---SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM  235 (422)
T ss_dssp             ----HHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT
T ss_pred             ----HHHHHhhcC---CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccc
Confidence                566666553   4688899888888888755 88999999999999999999999999987777522222222   


Q ss_pred             -CCCCcEEEeccccc-CCcceeEEEecHHHHHhchh--------------------h------------------hhHHH
Q psy11784        150 -GAVPDIITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L------------------DDNRP  189 (284)
Q Consensus       150 -g~~pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l------------------~~~~~  189 (284)
                       +...++.++||.++ .|+++|++++++++++.+..                    +                  +++++
T Consensus       236 ~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~  315 (422)
T 3fvs_A          236 WERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQR  315 (422)
T ss_dssp             GGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHH
T ss_pred             cCcEEEEecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHH
Confidence             22244557899998 78999999999998876643                    1                  13445


Q ss_pred             HHHHHHHHHHhc--------cCceeEEEEecccH------------HHHHHHHHHH-HCCcEEeecCCC---------CC
Q psy11784        190 SGKYLVRPLGIN--------LHIFWCLILLSITY------------YLYRYTRRMK-EAKIIVANEGEY---------GN  239 (284)
Q Consensus       190 ~~~~l~~~L~~~--------~G~~~~i~~~~~~~------------~~~~~~~~l~-~~Gv~~~~~~~~---------~~  239 (284)
                      +.+++.+.|++.        .|+++++++.....            ...++++.++ ++||++.++..+         .+
T Consensus       316 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~  395 (422)
T 3fvs_A          316 CRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDH  395 (422)
T ss_dssp             HHHHHHHHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCS
T ss_pred             HHHHHHHHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCC
Confidence            556666677664        45566666531000            0457777766 579999986543         57


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        240 VLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       240 ~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      ++|++.  ..|+++|++++++|.+++++
T Consensus       396 ~iRis~--~~~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          396 YIRFCF--VKDEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             EEEEEC--CCCHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEe--cCCHHHHHHHHHHHHHHHhh
Confidence            999974  45999999999999988754

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.85  E-value=3.7e-20  Score=167.83  Aligned_cols=233  Identities=14%  Similarity=0.123  Sum_probs=156.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++....  ...+|++...+||+....+......           +..+|....     . +        .+++
T Consensus        91 ~~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~-----~-d--------~~~l  143 (377)
T 3fdb_A           91 VRGLYIAIDHFTP--AQSKVIVPTPAYPPFFHLLSATQRE-----------GIFIDATGG-----I-N--------LHDV  143 (377)
T ss_dssp             HHHHHHHHHHHSC--TTCCEEEEESCCTHHHHHHHHHTCC-----------EEEEECTTS-----C-C--------HHHH
T ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCcHhHHHHHHHcCCE-----------EEEccCCCC-----C-C--------HHHH
Confidence            3677777776522  2367888999999876554432211           122333221     1 1        6888


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcccc-Ccc---ccccccCCCCcEE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG-SHF---WAFQTQGAVPDII  156 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G-~~~---~a~~~~g~~pDiv  156 (284)
                      ++.++.   ++.++++...++..|. .+|.+.+++|.++|++||+++|+||+|++|++.| ...   ......+..+++.
T Consensus       144 ~~~l~~---~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  219 (377)
T 3fdb_A          144 EKGFQA---GARSILLCNPYNPLGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITIT  219 (377)
T ss_dssp             HHHHHT---TCCEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEE
T ss_pred             HHHhcc---CCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEE
Confidence            888873   3444544444777776 4578889999999999999999999999987777 211   1222233345677


Q ss_pred             Eeccccc-CCcceeEEEe-cHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh-c-
Q psy11784        157 TVGKPMG-NGMPIGAVIT-SRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI-N-  201 (284)
Q Consensus       157 ~~sK~l~-~G~p~gav~~-~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~-~-  201 (284)
                      ++||.++ +|+++|++++ ++++++.+..                               .++++++.+++.+.|++ + 
T Consensus       220 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  299 (377)
T 3fdb_A          220 APSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIP  299 (377)
T ss_dssp             CSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             eChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            8999996 6899998776 7888776543                               22556667777777776 2 


Q ss_pred             --------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 --------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 --------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                              .+++.++++. ......++++.|+++ ||++.++..+    .+++|++++  .+++++++++++|.+++++
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          300 GAKITPMQATYLMWIDFR-DTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             TCEECCCSBCSEEEEECT-TSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred             CceEecCCeeEEEEEECc-ccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence                    3444456663 211124577777765 9999986543    479999876  4899999999999988754

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.84  E-value=9.3e-20  Score=166.41  Aligned_cols=237  Identities=13%  Similarity=0.122  Sum_probs=157.1

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      ||++.+++....  ...+|++...+||+....+..... .          +..+|....  ..+.-|        .++++
T Consensus       102 ~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~-~----------~~~v~~~~~--~~~~~d--------~~~l~  158 (391)
T 3h14_A          102 GGFLLAFTALFD--SGDRVGIGAPGYPSYRQILRALGL-V----------PVDLPTAPE--NRLQPV--------PADFA  158 (391)
T ss_dssp             HHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTC-E----------EEEEECCGG--GTTSCC--------HHHHT
T ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHcCC-E----------EEEeecCcc--cCCCCC--------HHHHH
Confidence            566777665522  235688888888876644432211 0          112232210  111111        44444


Q ss_pred             HHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEeccc
Q psy11784         82 NIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKP  161 (284)
Q Consensus        82 ~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~  161 (284)
                      +.      ++.+|+++..++..|.+ .|.+.+++|.++|++||+++|+||+|++|.+.|.........+....+.++||.
T Consensus       159 ~~------~~~~v~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  231 (391)
T 3h14_A          159 GL------DLAGLMVASPANPTGTM-LDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKY  231 (391)
T ss_dssp             TS------CCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSST
T ss_pred             hc------CCeEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhc
Confidence            33      56778888778877764 477889999999999999999999999987766422222222222334478999


Q ss_pred             cc-CCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc---------
Q psy11784        162 MG-NGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN---------  201 (284)
Q Consensus       162 l~-~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~---------  201 (284)
                      ++ .|+++|++++++++++.+..                              .++++++.+++.+.|++.         
T Consensus       232 ~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  311 (391)
T 3h14_A          232 FSMTGWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAGFTRIAPPD  311 (391)
T ss_dssp             TCCTTSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCC
T ss_pred             cCCccceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence            98 79999999999988776654                              224555666677777654         


Q ss_pred             cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecCCC-----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        202 LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGEY-----GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       202 ~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~-----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      .|+++++++........++++.|+++ ||++.++..+     .+++|++++.  +++++++++++|.+++++..+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~~  384 (391)
T 3h14_A          312 GAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARGE  384 (391)
T ss_dssp             BTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC--
T ss_pred             eeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhcc
Confidence            34556666632134567888998875 9999986533     4689998766  899999999999999987654

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.84  E-value=9.8e-20  Score=168.75  Aligned_cols=240  Identities=17%  Similarity=0.132  Sum_probs=162.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++....  ...+|+....+|++....+......           +..+|...  ...+.-|        ++.+
T Consensus       128 t~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~-----------~~~~~~~~--~~~~~~d--------~~~l  184 (427)
T 3dyd_A          128 SQAIDLCLAVLAN--PGQNILVPRPGFSLYKTLAESMGIE-----------VKLYNLLP--EKSWEID--------LKQL  184 (427)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCE-----------EEEEEEEG--GGTTEEC--------HHHH
T ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCE-----------EEEEeccc--ccCCCCC--------HHHH
Confidence            3677777777642  3467888888998866544432210           11122110  0011111        5666


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE---E
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII---T  157 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv---~  157 (284)
                      ++.++   .++.+|++...++..|. .++++++++|.++|++||+++|+||+|++|++.|..+.....++..++++   +
T Consensus       185 ~~~l~---~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S  260 (427)
T 3dyd_A          185 EYLID---EKTACLIVNNPSNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGG  260 (427)
T ss_dssp             HSSCC---TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEE
T ss_pred             HHHhc---cCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEee
Confidence            66554   34666666655777776 56889999999999999999999999999988776333445556666666   8


Q ss_pred             eccccc-CCcceeEEEec-------HHHHHhchh-------------------------------hhhHHHHHHHHHHHH
Q psy11784        158 VGKPMG-NGMPIGAVITS-------RKIAESLNC-------------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       158 ~sK~l~-~G~p~gav~~~-------~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L  198 (284)
                      +||.++ .|+++|+++++       +++.+.+..                               .++++++.+++.+.|
T Consensus       261 ~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L  340 (427)
T 3dyd_A          261 LAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGAL  340 (427)
T ss_dssp             STTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999975 58999999997       456654432                               224556667777777


Q ss_pred             Hhc---------cCceeEEEEec----ccHHHHHHHHHHH-HCCcEEeecCC--CCCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        199 GIN---------LHIFWCLILLS----ITYYLYRYTRRMK-EAKIIVANEGE--YGNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       199 ~~~---------~G~~~~i~~~~----~~~~~~~~~~~l~-~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      +++         .|+++.+.+..    ......++++.|+ ++||++.++..  ..+++|++.  .+++++|++++++|.
T Consensus       341 ~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~l~  418 (427)
T 3dyd_A          341 AAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLEACSRIQ  418 (427)
T ss_dssp             HHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHHHHHHHH
T ss_pred             hcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHHHHHHHH
Confidence            764         35566666631    1134567888886 78999998753  247899974  579999999999999


Q ss_pred             HHHHHHh
Q psy11784        263 RIFTSLQ  269 (284)
Q Consensus       263 ~~l~~~~  269 (284)
                      +++++..
T Consensus       419 ~~l~~~~  425 (427)
T 3dyd_A          419 EFCEQHY  425 (427)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988753

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.84  E-value=4e-20  Score=170.15  Aligned_cols=242  Identities=14%  Similarity=0.109  Sum_probs=161.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++...  ....+|++.+.+||+....+... +..          +..+|.... ...+..|        +++|
T Consensus        96 ~~al~~~~~~~~--~~gd~Vl~~~~~y~~~~~~~~~~-g~~----------~~~v~~~~~-~~~~~~d--------~~~l  153 (411)
T 2o0r_A           96 TEAIAAAVLGLV--EPGSEVLLIEPFYDSYSPVVAMA-GAH----------RVTVPLVPD-GRGFALD--------ADAL  153 (411)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHT-TCE----------EEEEECEEE-TTEEECC--------HHHH
T ss_pred             HHHHHHHHHHhc--CCCCEEEEeCCCcHhHHHHHHHc-CCE----------EEEeecccc-ccCCCCC--------HHHH
Confidence            367788877663  23467999999999976543322 111          112222110 0001111        6777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc----cCCCCcEE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT----QGAVPDII  156 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~----~g~~pDiv  156 (284)
                      ++.+.   +++++|+++..++..|.+ +|.+++++|.++|++||+++|+||+|+++.+.|........    .+....+.
T Consensus       154 ~~~l~---~~~~~v~l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  229 (411)
T 2o0r_A          154 RRAVT---PRTRALIINSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITIS  229 (411)
T ss_dssp             HHHCC---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred             HHhhc---cCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEe
Confidence            77764   468889888888888865 57899999999999999999999999988766642222222    23334456


Q ss_pred             Eeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 TVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +++|.++ .|+++|++++++++++.+..                               .++++++.+++.+.|++.   
T Consensus       230 s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  309 (411)
T 2o0r_A          230 SAAKMFNCTGWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEIGFA  309 (411)
T ss_dssp             EHHHHTTCTTTCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             echhhcCCccceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence            8899998 78999999999998876643                               124455666777777653   


Q ss_pred             -----cCceeEEEEecc-cHHHHHHHHHHH-HCCcEEeecCCC---------------CCEEEEEcCCCCCHHHHHHHHH
Q psy11784        202 -----LHIFWCLILLSI-TYYLYRYTRRMK-EAKIIVANEGEY---------------GNVLLFLPAMCLTTENVLFIVS  259 (284)
Q Consensus       202 -----~G~~~~i~~~~~-~~~~~~~~~~l~-~~Gv~~~~~~~~---------------~~~lr~~p~l~~t~~~id~~~~  259 (284)
                           .|+++++++... .....++++.|+ ++||++.++..+               .+.+||+++  .++++++++++
T Consensus       310 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~  387 (411)
T 2o0r_A          310 VHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIR  387 (411)
T ss_dssp             ECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHH
T ss_pred             ecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHH
Confidence                 355677777321 123567888887 679999876322               468999875  48999999999


Q ss_pred             HHHHHHHHHhh
Q psy11784        260 TLNRIFTSLQM  270 (284)
Q Consensus       260 ~l~~~l~~~~~  270 (284)
                      +|.+++++...
T Consensus       388 ~l~~~~~~~~~  398 (411)
T 2o0r_A          388 RLSVLAERPAT  398 (411)
T ss_dssp             HHGGGGC----
T ss_pred             HHHHHHhccCc
Confidence            99988766543

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.84  E-value=6.9e-20  Score=170.81  Aligned_cols=236  Identities=14%  Similarity=0.107  Sum_probs=161.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccC-CCC-------cCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPF-PDT-------YRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~   72 (284)
                      +||++.+++...  ....+|+..+.+||+....+..... .          +..+|. ++.       ....+..+    
T Consensus       128 ~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~-~----------~~~v~~~~~~~~~~~~~~~~~~~~d----  190 (447)
T 3b46_A          128 NEGILSCLMGLL--NAGDEVIVFEPFFDQYIPNIELCGG-K----------VVYVPINPPKELDQRNTRGEEWTID----  190 (447)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-E----------EEEEEEECCGGGGTSCBCSTTSEEC----
T ss_pred             HHHHHHHHHHHc--CCCCEEEEeCCCchhHHHHHHHcCC-E----------EEEEeCCCccccccccccccCcccC----
Confidence            367888887662  2346799999999986654432211 1          111221 110       00011111    


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc--cccc--cc
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH--FWAF--QT  148 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~--~~a~--~~  148 (284)
                          .++|++.+.   +++++|++++.++..|.+ +|++++++|.++|++||+++|+||+|++|.+.|..  ....  ..
T Consensus       191 ----~~~l~~~l~---~~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~  262 (447)
T 3b46_A          191 ----FEQFEKAIT---SKTKAVIINTPHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEI  262 (447)
T ss_dssp             ----HHHHHTTCC---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHH
T ss_pred             ----HHHHHHhhc---cCCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCC
Confidence                566766654   468889888878877865 57899999999999999999999999988766631  1222  13


Q ss_pred             cCCCCcEEEeccccc-CCcceeEEEe-cHHHHHhchh---------------------------------hhhHHHHHHH
Q psy11784        149 QGAVPDIITVGKPMG-NGMPIGAVIT-SRKIAESLNC---------------------------------LDDNRPSGKY  193 (284)
Q Consensus       149 ~g~~pDiv~~sK~l~-~G~p~gav~~-~~~i~~~~~~---------------------------------l~~~~~~~~~  193 (284)
                      ++..+.+.++||.++ .|+++|++++ ++++++.+..                                 .++++++.++
T Consensus       263 ~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~  342 (447)
T 3b46_A          263 GQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKI  342 (447)
T ss_dssp             HTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHH
Confidence            456677789999998 7999999999 9998876643                                 1245566667


Q ss_pred             HHHHHHhc--------cCceeEEEEecc--------------cHHHHHHHHHHH-HCCcEEeecCCC---------CCEE
Q psy11784        194 LVRPLGIN--------LHIFWCLILLSI--------------TYYLYRYTRRMK-EAKIIVANEGEY---------GNVL  241 (284)
Q Consensus       194 l~~~L~~~--------~G~~~~i~~~~~--------------~~~~~~~~~~l~-~~Gv~~~~~~~~---------~~~l  241 (284)
                      +.+.|+++        .|+++++++...              .....++++.|. ++||++.|+..+         .+++
T Consensus       343 l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~i  422 (447)
T 3b46_A          343 FTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLL  422 (447)
T ss_dssp             HHHHHHHHTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEE
T ss_pred             HHHHHHHCCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEE
Confidence            77777654        466777776321              124567888887 589999887432         5789


Q ss_pred             EEEcCCCCCHHHHHHHHHHHHH
Q psy11784        242 LFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       242 r~~p~l~~t~~~id~~~~~l~~  263 (284)
                      ||+++  .++++|++++++|.+
T Consensus       423 Rls~~--~~~e~l~~~~~~l~~  442 (447)
T 3b46_A          423 RFAVC--KDDAYLENAVERLKL  442 (447)
T ss_dssp             EEECC--SCHHHHHHHHHHGGG
T ss_pred             EEEEe--CCHHHHHHHHHHHHH
Confidence            99876  489999999999875

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.84  E-value=1.2e-19  Score=165.50  Aligned_cols=232  Identities=14%  Similarity=0.122  Sum_probs=159.0

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++..  .....+|++...+||+....+.... ..          +..+|....   .+..+        +++|
T Consensus       101 ~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g-~~----------~~~v~~~~~---~~~~d--------~~~l  156 (386)
T 1u08_A          101 TEALYAAITAL--VRNGDEVICFDPSYDSYAPAIALSG-GI----------VKRMALQPP---HFRVD--------WQEF  156 (386)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTT-CE----------EEEEECCTT---TCCCC--------HHHH
T ss_pred             HHHHHHHHHHh--CCCCCEEEEeCCCchhHHHHHHHcC-CE----------EEEeecCcc---cCcCC--------HHHH
Confidence            36777777765  2234679999999998665433221 11          112332211   11122        6777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc---ccccc-ccCCCCcEE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH---FWAFQ-TQGAVPDII  156 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~---~~a~~-~~g~~pDiv  156 (284)
                      ++.+.   +++++|+++..++..|.+ .|.+++++|.++|++||+++|+||+|++|.+.|..   +.... ..+....+.
T Consensus       157 ~~~l~---~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  232 (386)
T 1u08_A          157 AALLS---ERTRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVS  232 (386)
T ss_dssp             HHHCC---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEE
T ss_pred             HHhhc---ccCEEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEe
Confidence            77664   468888888778877865 57899999999999999999999999988666631   12221 234555677


Q ss_pred             Eeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 TVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +++|.++ .|+++|++++++++++.+..                               .++++++.+++.+.|++.   
T Consensus       233 s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  312 (386)
T 1u08_A          233 SFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLE  312 (386)
T ss_dssp             EHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSSCE
T ss_pred             cchhhcCCcccceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence            8999998 68999999999998876643                               124455666677766653   


Q ss_pred             -----cCceeEEEEeccc--HHHHHHHHHHH-HCCcEEeecCC------CCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 -----LHIFWCLILLSIT--YYLYRYTRRMK-EAKIIVANEGE------YGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 -----~G~~~~i~~~~~~--~~~~~~~~~l~-~~Gv~~~~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                           .|+++++++. ..  ....++++.|. ++||++.++..      ..+.+|++++  .++++|++++++|.+
T Consensus       313 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          313 ILPCEGTYFLLVDYS-AVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ  385 (386)
T ss_dssp             ECCCCBSSEEEEECT-TTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred             ecCCCceEEEEEecC-CCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence                 3566777763 21  24567888887 68999988642      2468999876  489999999998853

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.84  E-value=4e-20  Score=170.06  Aligned_cols=236  Identities=11%  Similarity=0.071  Sum_probs=159.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++...  ....+|++...+||+....+.... ..          +..+|...   ..+..|        +++|
T Consensus       119 ~~al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~g-~~----------~~~v~~~~---~~~~~d--------~~~l  174 (404)
T 2o1b_A          119 KNGLVAVPTCVI--NPGDYVLLPDPGYTDYLAGVLLAD-GK----------PVPLNLEP---PHYLPD--------WSKV  174 (404)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCSSHHHHHHHTT-CE----------EEEEECCT---TTCCCC--------GGGS
T ss_pred             HHHHHHHHHHhc--CCCCEEEEcCCCchhHHHHHHHCC-CE----------EEEeccCc---ccCcCC--------HHHH
Confidence            367777777652  223679999999999776544321 11          11223221   011111        4556


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc--ccccc-ccCCCCcEEE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH--FWAFQ-TQGAVPDIIT  157 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~--~~a~~-~~g~~pDiv~  157 (284)
                      ++.+.   +++++|+++..++..|.+ +|.+++++|.++|++||+++|+||+|++|.+.|..  .+... ..+....+.+
T Consensus       175 ~~~l~---~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s  250 (404)
T 2o1b_A          175 DSQII---DKTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYS  250 (404)
T ss_dssp             CHHHH---HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEE
T ss_pred             HHhhc---cCceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEe
Confidence            66664   347888887556667765 68899999999999999999999999988665531  11111 1122344668


Q ss_pred             eccccc-CCcceeEEEecHHHHHhchh--------------------h-----------hhHHHHHHHHHHHHHhc----
Q psy11784        158 VGKPMG-NGMPIGAVITSRKIAESLNC--------------------L-----------DDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       158 ~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l-----------~~~~~~~~~l~~~L~~~----  201 (284)
                      ++|.++ +|+++|++++++++++.+..                    +           ++++++.+++.+.|++.    
T Consensus       251 ~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  330 (404)
T 2o1b_A          251 LSKGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKADLPF  330 (404)
T ss_dssp             STTTTTCGGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             cchhccCchhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence            999998 78999999999998876654                    1           13455666777777654    


Q ss_pred             ----cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 ----LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 ----~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                          .|+++++.+. ......++++.|+ ++||++.++..+    .+++|++++.  +++++++++++|.+++++
T Consensus       331 ~~~~~g~~~~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          331 VHAKGGIYVWLETP-PGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             ECCCBSSEEEEECC-TTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred             cCCCcceEEEEeCC-CCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence                3556677763 3224567888887 579999986432    4799999875  788999999999887654

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.84  E-value=4.8e-20  Score=167.18  Aligned_cols=232  Identities=10%  Similarity=-0.010  Sum_probs=155.6

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +||++.+++.....++..+|++...+||+....+......           +..+|..+...  +.          . ++
T Consensus        92 ~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~-----------~~~~~~~~~~~--~~----------~-~l  147 (376)
T 3ezs_A           92 REVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAK-----------SLLMPLTKEND--FT----------P-SL  147 (376)
T ss_dssp             HHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCE-----------EEEEECCGGGT--SC----------C-CC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCE-----------EEEcccCCCCC--cc----------h-hH
Confidence            3677778877654333568999999999876654432211           11222221100  00          0 22


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccc---------ccCC
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQ---------TQGA  151 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~---------~~g~  151 (284)
                      ++.+.   +++.+|++...++..|.. +|.+.+++|.++|++||+++|+||+|++|.+.|. .....         ..+.
T Consensus       148 ~~~~~---~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  222 (376)
T 3ezs_A          148 NEKEL---QEVDLVILNSPNNPTGRT-LSLEELISWVKLALKHDFILINDECYSEIYENTP-PPSLLEACMLAGNEAFKN  222 (376)
T ss_dssp             CHHHH---HHCSEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC-CCCHHHHHHHTTCTTCTT
T ss_pred             Hhhhc---cCCCEEEEcCCCCCcCCC-CCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCHHHccccccccccCc
Confidence            33343   135566665447777764 5788899999999999999999999999877764 33322         2445


Q ss_pred             CCcEEEeccccc-CCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        152 VPDIITVGKPMG-NGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       152 ~pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      ...+.++||.+| +|+++|++++++++++.+..                              .++++++.+++.+.|+.
T Consensus       223 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~  302 (376)
T 3ezs_A          223 VLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFKN  302 (376)
T ss_dssp             EEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             EEEEecchhccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence            566778999997 78999999999999887654                              11334444445554432


Q ss_pred             c----cCceeEEEEecccHHHHHHHHHHHH-CCcEEeecCC------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        201 N----LHIFWCLILLSITYYLYRYTRRMKE-AKIIVANEGE------YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       201 ~----~G~~~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +    .|.++++.+.    ...++++.|++ +||++.++..      ..+++|++++  .|++++++++++|.+++++
T Consensus       303 ~~~~~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          303 TLIYPYSFYVYLPVQ----NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             CCCCSBSSEEEEECS----CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcceEEEEECC----CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence            1    4666777762    46678889987 8999988643      3479999876  3999999999999988753

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.84  E-value=3.9e-19  Score=162.47  Aligned_cols=237  Identities=11%  Similarity=0.134  Sum_probs=165.0

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      +|++.+++.... .|+.+|++...+||+....+..... .          +..+|....   .+.-|        .++|+
T Consensus       110 ~al~~~~~~l~~-~g~d~vl~~~p~~~~~~~~~~~~g~-~----------~~~v~~~~~---~~~~d--------~~~l~  166 (398)
T 3ele_A          110 ASLSICFRALTS-DAYDEFITIAPYFPEYKVFVNAAGA-R----------LVEVPADTE---HFQID--------FDALE  166 (398)
T ss_dssp             HHHHHHHHHHCC-STTCEEEEESSCCTHHHHHHHHTTC-E----------EEEECCCTT---TSSCC--------HHHHH
T ss_pred             HHHHHHHHHHcC-CCCCEEEEeCCCchhhHHHHHHcCC-E----------EEEEecCCc---CCcCC--------HHHHH
Confidence            677777776632 3447899999999987654433211 0          112332210   11112        56777


Q ss_pred             HHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHH------hCCEEEEecccccCccccCcc-ccccccCCCCc
Q psy11784         82 NIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE------IGGVVIADEIQCGMGRSGSHF-WAFQTQGAVPD  154 (284)
Q Consensus        82 ~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tG~gr~G~~~-~a~~~~g~~pD  154 (284)
                      +.++   +++.+|++...++..|.+ .|.+.+++|.++|++      ||+++|+||+|++|.+.|... .....++....
T Consensus       167 ~~l~---~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~  242 (398)
T 3ele_A          167 ERIN---AHTRGVIINSPNNPSGTV-YSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLV  242 (398)
T ss_dssp             HTCC---TTEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEE
T ss_pred             HHhC---cCCCEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEE
Confidence            7664   467888887667777764 577889999999999      999999999999987766411 12233344455


Q ss_pred             EEEeccccc-CCcceeEEEecHHHH------Hhchh---------------------------hhhHHHHHHHHHHHHHh
Q psy11784        155 IITVGKPMG-NGMPIGAVITSRKIA------ESLNC---------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 iv~~sK~l~-~G~p~gav~~~~~i~------~~~~~---------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +.++||.++ .|+++|+++++++++      +.+..                           .++++++.+++.+.|++
T Consensus       243 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~L~~  322 (398)
T 3ele_A          243 CYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGDINAYKENRDLLYEGLTR  322 (398)
T ss_dssp             EEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            568999998 899999999988732      22111                           34678888999999987


Q ss_pred             c--------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        201 N--------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       201 ~--------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      +        .|+++++.+. . .....+++.|.++||++.++..+  .+++|+++.  +++++|++++++|.++++++.
T Consensus       323 ~g~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~  397 (398)
T 3ele_A          323 IGYHCFKPDGAFYMFVKAL-E-DDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMPAFEKIYKKYN  397 (398)
T ss_dssp             HTCCEECCSBSSEEEEECS-S-SCHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCeecCCCeeEEEEEEcC-C-CCHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence            4        3555677663 2 24678888999999999986543  479999864  799999999999999988753

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.84  E-value=2e-19  Score=165.54  Aligned_cols=234  Identities=13%  Similarity=0.087  Sum_probs=161.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCC--CcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPD--TYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   78 (284)
                      ++|++.+++..  .....+|++.+.+||+....+.... ..          +..+|...  .+..             .+
T Consensus       112 t~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~g-~~----------~~~v~~~~~~~~~~-------------~~  165 (409)
T 2gb3_A          112 SEAILFSFAVI--ANPGDEILVLEPFYANYNAFAKIAG-VK----------LIPVTRRMEEGFAI-------------PQ  165 (409)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHHT-CE----------EEEEECCGGGTSCC-------------CT
T ss_pred             HHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHcC-CE----------EEEeccCCCCCCcc-------------HH
Confidence            46788888776  2234679999999998765443221 11          11223221  1100             12


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-CCcEE-
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-VPDII-  156 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~pDiv-  156 (284)
                      +|++.++   +++++|++++.++..|.+ +|++++++|.++|++||+++|+||+|+++.+.|+ +... ..+. ..|++ 
T Consensus       166 ~l~~~l~---~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~-~~~~-~~~~~~~~i~~  239 (409)
T 2gb3_A          166 NLESFIN---ERTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASA-LSIESDKVVVI  239 (409)
T ss_dssp             TGGGGCC---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCG-GGSCCTTEEEE
T ss_pred             HHHHhhC---cCCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccCCC-CCCc-cccCCCCEEEE
Confidence            3444443   368888888878877865 5789999999999999999999999998876664 3332 2233 34765 


Q ss_pred             -Eeccccc-CCcceeEEEecH-HHHHhchh------------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        157 -TVGKPMG-NGMPIGAVITSR-KIAESLNC------------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       157 -~~sK~l~-~G~p~gav~~~~-~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                       +++|.++ +|+++|++++++ ++++.+..                              .++++++.+++.+.|+++  
T Consensus       240 ~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  319 (409)
T 2gb3_A          240 DSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGL  319 (409)
T ss_dssp             EESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ecchhccCCccceEEEEEECcHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence             6799998 689999999998 88765432                              124556677777777753  


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHHHC------CcEEeecCC-------CCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMKEA------KIIVANEGE-------YGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~~~------Gv~~~~~~~-------~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                             .|++.++.+ + .....++++.|+++      ||++.++..       ..+.+|+.++  ++++++++++++|
T Consensus       320 ~~~~~~~~~~~~~~~~-~-~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l  395 (409)
T 2gb3_A          320 KRFTKPSGAFYITAEL-P-VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVL  395 (409)
T ss_dssp             CCBCCCSBSSEEEEEC-S-SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHH
T ss_pred             eeeeCCCeeEEEEEEe-C-CCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHH
Confidence                   234445555 2 23467889999987      999988642       2579999987  7999999999999


Q ss_pred             HHHHHHHhh
Q psy11784        262 NRIFTSLQM  270 (284)
Q Consensus       262 ~~~l~~~~~  270 (284)
                      .++++++..
T Consensus       396 ~~~l~~~~~  404 (409)
T 2gb3_A          396 MEGLKMFCS  404 (409)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhhh
Confidence            999988753

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.84  E-value=1.9e-19  Score=163.21  Aligned_cols=221  Identities=14%  Similarity=0.127  Sum_probs=153.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++...  ....+|++.+.+||+....+.... ..          +..+|         . |        .++|
T Consensus        99 ~~a~~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g-~~----------~~~v~---------~-d--------~~~l  147 (370)
T 2z61_A           99 SLGLFFALSSII--DDGDEVLIQNPCYPCYKNFIRFLG-AK----------PVFCD---------F-T--------VESL  147 (370)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEESSCCTHHHHHHHHTT-CE----------EEEEC---------S-S--------HHHH
T ss_pred             HHHHHHHHHHhc--CCCCEEEEeCCCchhHHHHHHHcC-CE----------EEEeC---------C-C--------HHHH
Confidence            367778877662  233679999999998765543221 10          11222         1 1        5777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-CC-CCc--EE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GA-VPD--II  156 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-g~-~pD--iv  156 (284)
                      ++.++   +++++|+++..++..|...+    .+ |.++|++||+++|+||+|+++.+.|. ......+ +. ..|  +.
T Consensus       148 ~~~l~---~~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~i~~~  218 (370)
T 2z61_A          148 EEALS---DKTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFDENLEKTILIN  218 (370)
T ss_dssp             HHHCC---SSEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTCTTCSSEEEEE
T ss_pred             HHhcc---cCceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHccCCCCcEEEEe
Confidence            77765   36788888877888888766    33 99999999999999999998866664 3333322 12 224  44


Q ss_pred             Eeccccc-CCcceeEEEecHHHHHhchh--------------------hh------------hHHHHHHHHHHHHHhc--
Q psy11784        157 TVGKPMG-NGMPIGAVITSRKIAESLNC--------------------LD------------DNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       157 ~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l~------------~~~~~~~~l~~~L~~~--  201 (284)
                      +++|.++ .|+++|++++++++++.+..                    ++            +++++.+++.+.|+++  
T Consensus       219 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  298 (370)
T 2z61_A          219 GFSKLYAMTGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGW  298 (370)
T ss_dssp             ESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cChhccCCccceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7899998 78999999999998876643                    21            3445566677777663  


Q ss_pred             ------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 ------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                            .|+++++++ +.  ...++.+.|+ ++||++.++..+    .+++|++++  ++++++++++++|.++++
T Consensus       299 ~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          299 EVNNPIGAYYVFPNI-GE--DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             BCCCCCBTTEECCBC-SS--CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             eecCCCcceEEEEec-CC--CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence                  244445555 22  4667889998 789999986432    468999988  699999999999988764

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.83  E-value=3.5e-19  Score=162.82  Aligned_cols=233  Identities=12%  Similarity=0.138  Sum_probs=161.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++..  .....+|++.+.+||+....+.... ..          +..+|....  ..+.-+        .++|
T Consensus       111 t~al~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g-~~----------~~~v~~~~~--~~~~~d--------~~~l  167 (389)
T 1o4s_A          111 KQALFNAFMAL--LDPGDEVIVFSPVWVSYIPQIILAG-GT----------VNVVETFMS--KNFQPS--------LEEV  167 (389)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTT-CE----------EEEEECCGG--GTTCCC--------HHHH
T ss_pred             HHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHcC-CE----------EEEEecCCc--cCCCCC--------HHHH
Confidence            36777777765  2234678999999999765443221 11          112332210  011111        5677


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC--CCCc--EE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG--AVPD--II  156 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g--~~pD--iv  156 (284)
                      ++.++   +++++|+++..++..|. .+|++++++|.++|++||+++|+||+|+++.+.|. ......+.  -..|  +.
T Consensus       168 ~~~l~---~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~-~~~~~~~~~~~~~~i~~~  242 (389)
T 1o4s_A          168 EGLLV---GKTKAVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE-FTSILDVSEGFDRIVYIN  242 (389)
T ss_dssp             HHTCC---TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC-CCCHHHHCSSSTTEEEEE
T ss_pred             HHhcc---cCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCCHhhcCCCCCcEEEEe
Confidence            77664   35788888877777786 45789999999999999999999999998866553 22222221  1234  45


Q ss_pred             Eeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        157 TVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       157 ~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      +++|.++ .|+++|++++++++++.+..                            .++++++.+++.+.|+++      
T Consensus       243 s~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  322 (389)
T 1o4s_A          243 GFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVE  322 (389)
T ss_dssp             ESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             echhhcCCcccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCeeec
Confidence            7899998 68999999999998876543                            235667788888888774      


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                        .|+++++.+ +  ....++++.|+ ++||++.++..+  .+++|++++  .+++++++++++|.++++
T Consensus       323 ~~~~~~~~~~~-~--~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          323 PEGAFYLFFKV-R--GDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             CSBSSEEEEEC-S--SCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             CCcceEEEEeC-C--CCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence              345556665 2  23567889997 889999986433  369999877  399999999999988764

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.83  E-value=5.8e-19  Score=159.65  Aligned_cols=228  Identities=14%  Similarity=0.075  Sum_probs=160.8

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      ||++.+++...  ....+|++...+||+....+..... .          +..+|...    .+..|        .++++
T Consensus        96 ~a~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~g~-~----------~~~v~~~~----~~~~d--------~~~l~  150 (367)
T 3euc_A           96 EIISMLALAAA--RPGAKVMAPVPGFVMYAMSAQFAGL-E----------FVGVPLRA----DFTLD--------RGAML  150 (367)
T ss_dssp             HHHHHHHHHTC--CTTCEEEEEESCSCCSCHHHHTTTC-E----------EEEEECCT----TSCCC--------HHHHH
T ss_pred             HHHHHHHHHHc--CCCCEEEEcCCCHHHHHHHHHHcCC-e----------EEEecCCC----CCCCC--------HHHHH
Confidence            56666666542  2235788889999987665443211 0          12233322    11112        67888


Q ss_pred             HHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh--CCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         82 NIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI--GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        82 ~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      +.+..+  ++++|+++..++..|.+ .+.+.+++|.++|++|  |+++|+||+|++|+..+. .......+...++.+++
T Consensus       151 ~~l~~~--~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~i~~~s~s  226 (367)
T 3euc_A          151 AAMAEH--QPAIVYLAYPNNPTGNL-FDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESW-MSRLTDFGNLLVMRTVS  226 (367)
T ss_dssp             HHHHHH--CCSEEEEESSCTTTCCC-CCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCS-GGGGGTCTTEEEEEECC
T ss_pred             HHhhcc--CCCEEEEcCCCCCCCCC-CCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccch-HHHHhhCCCEEEEecch
Confidence            888732  46788888777777765 4778899999999999  999999999998865443 33444455556677899


Q ss_pred             ccccCCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc--------cC
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN--------LH  203 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~--------~G  203 (284)
                      |...+|+++|++++++++++.+..                            .++++++.+++.+.|+++        .|
T Consensus       227 K~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~  306 (367)
T 3euc_A          227 KLGLAGIRLGYVAGDPQWLEQLDKVRPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAA  306 (367)
T ss_dssp             CTTSCSCCEEEEEECHHHHHHHGGGCCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSS
T ss_pred             hhcccccCceeeeeCHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCC
Confidence            995468999999999999887654                            224556667777777664        45


Q ss_pred             ceeEEEEecccHHHHHHHHHHHHCCcEEeecCC----CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        204 IFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       204 ~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      .++++.+ +   ...++.+.|.++||++.++..    ..+++|++.+   |++|+++++++|++++
T Consensus       307 ~~~~~~~-~---~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l  365 (367)
T 3euc_A          307 NFLLARV-P---DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASL  365 (367)
T ss_dssp             SEEEEEC-S---CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred             eEEEEEC-C---CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence            5666665 2   467788899999999998653    2479999854   9999999999998875

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.83  E-value=1.2e-19  Score=166.72  Aligned_cols=238  Identities=13%  Similarity=0.073  Sum_probs=163.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++..  .....+|++.+.+||+....+.... ..          +..+|....  ..+.-|        .++|
T Consensus       111 ~~al~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g-~~----------~~~v~~~~~--~~~~~d--------~~~l  167 (406)
T 1xi9_A          111 TEALQLIFGAL--LDPGDEILVPGPSYPPYTGLVKFYG-GK----------PVEYRTIEE--EDWQPD--------IDDI  167 (406)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHHTT-CE----------EEEEEEEGG--GTSEEC--------HHHH
T ss_pred             HHHHHHHHHHh--CCCCCEEEEcCCCCccHHHHHHHcC-CE----------EEEeecCCC--cCCcCC--------HHHH
Confidence            36777787766  2234679999999998765543221 11          112222110  001111        5777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC-cEE--E
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP-DII--T  157 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p-Div--~  157 (284)
                      ++.++   .++++|++++.++..|.+ +|++++++|.++|++||+++|+||+|++|.+.+. ......++-.. |++  +
T Consensus       168 ~~~l~---~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~i~~~s  242 (406)
T 1xi9_A          168 RKKIT---DRTKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSLTKDVPVIVMNG  242 (406)
T ss_dssp             HHHCC---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC-CCCHHHHCSSSCEEEEEE
T ss_pred             HHhhC---cCceEEEEECCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC-CCCHHHcCCCceEEEEec
Confidence            77775   358888888878888864 5889999999999999999999999998866333 33333333111 444  5


Q ss_pred             eccccc-CCcceeEEE--ecH----HHHHhchh------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        158 VGKPMG-NGMPIGAVI--TSR----KIAESLNC------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       158 ~sK~l~-~G~p~gav~--~~~----~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      ++|.++ .|+++|+++  +++    ++++.+..                              .++++++.+++.+.|++
T Consensus       243 ~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  322 (406)
T 1xi9_A          243 LSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE  322 (406)
T ss_dssp             STTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            789998 689999999  888    88765533                              12456667777777876


Q ss_pred             c---------cCceeEEEEecc-cHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSI-TYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~-~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      +         .|++.++.+... .....++++.|+ ++||++.++..+    .+.+|++++  ++++++++++++|.+++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l  400 (406)
T 1xi9_A          323 IPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFM  400 (406)
T ss_dssp             STTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred             CCCCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence            4         244555555310 234678888887 889999987533    478999987  89999999999999998


Q ss_pred             HHH
Q psy11784        266 TSL  268 (284)
Q Consensus       266 ~~~  268 (284)
                      +++
T Consensus       401 ~~~  403 (406)
T 1xi9_A          401 KER  403 (406)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            765

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.83  E-value=1.2e-19  Score=165.62  Aligned_cols=235  Identities=12%  Similarity=0.035  Sum_probs=160.0

Q ss_pred             CcHHHHHHHHHHHccC---CccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTG---RQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~---r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      ++|++.+++......+   |..|++...+||+....+......           +..+|.+..   .+.-|        +
T Consensus       101 ~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~-----------~~~v~~~~~---g~~~d--------~  158 (396)
T 3jtx_A          101 REALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGE-----------IHFANCPAP---SFNPD--------W  158 (396)
T ss_dssp             HHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCE-----------EEEEECCTT---TCCCC--------G
T ss_pred             HHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCE-----------EEEeecCCC---CCccC--------H
Confidence            3677788877754311   368999999999876654432211           112332110   01111        4


Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccc--------cc
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQ--------TQ  149 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~--------~~  149 (284)
                      +++++.+..   ++.+|+++..++..|.+ .|.+.+++|.++|++||+++|+||+|++|.+.|.......        ..
T Consensus       159 ~~l~~~~~~---~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (396)
T 3jtx_A          159 RSISEEVWK---RTKLVFVCSPNNPSGSV-LDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSR  234 (396)
T ss_dssp             GGSCHHHHH---TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCC
T ss_pred             HHHHHhhcc---CcEEEEEECCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhccccc
Confidence            566666652   57777776657777764 5777799999999999999999999999877762122221        14


Q ss_pred             CCCCcEEEeccccc-CCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHH
Q psy11784        150 GAVPDIITVGKPMG-NGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       150 g~~pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L  198 (284)
                      +..+++.++||.++ .|+++|++++++++++.+..                              .++++++.+++.+.|
T Consensus       235 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l  314 (396)
T 3jtx_A          235 QKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPIL  314 (396)
T ss_dssp             TTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566778999876 58999999999998877654                              124555566666666


Q ss_pred             Hhc-------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCC----------CCCEEEEEcCCCCCHHHHHHHHHH
Q psy11784        199 GIN-------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGE----------YGNVLLFLPAMCLTTENVLFIVST  260 (284)
Q Consensus       199 ~~~-------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~----------~~~~lr~~p~l~~t~~~id~~~~~  260 (284)
                      ++.       .|+++++++. . .....+++.|+ ++||++.++..          ..+++|++++.  +++++++++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~  390 (396)
T 3jtx_A          315 QQVFDVKLPDASFYIWLKVP-D-GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVKAAED  390 (396)
T ss_dssp             TTTSCCCCCSSSSEEEEECT-T-SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHHHHHH
T ss_pred             HhcCCccCCCeeEEEEEECC-C-CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHHHHHH
Confidence            653       4667777773 2 24567888886 56999988643          24799998654  99999999999


Q ss_pred             HHHHH
Q psy11784        261 LNRIF  265 (284)
Q Consensus       261 l~~~l  265 (284)
                      |.+++
T Consensus       391 l~~~l  395 (396)
T 3jtx_A          391 IVSLY  395 (396)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            98764

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.83  E-value=6.7e-19  Score=162.92  Aligned_cols=189  Identities=11%  Similarity=0.108  Sum_probs=133.8

Q ss_pred             HHHHHHHHHhcC---------CCeeEEEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc---c
Q psy11784         77 AQAARNIMEAHR---------DNIATLICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH---F  143 (284)
Q Consensus        77 ~~~l~~~i~~~~---------~~vaavi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~---~  143 (284)
                      .++|++.++...         .++++|++.|. ++..|. ..|.+.+++|.++|++||+++|+||+|+++.+.|..   +
T Consensus       168 ~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~  246 (425)
T 2r2n_A          168 PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGN-SLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTF  246 (425)
T ss_dssp             HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCT
T ss_pred             HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCc
Confidence            677888886322         35788888775 555665 468999999999999999999999999987655531   1


Q ss_pred             ccccccCCCCcEEEecccccCCcceeEEEecHHHHHhchh--------------------hh----------------hH
Q psy11784        144 WAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNC--------------------LD----------------DN  187 (284)
Q Consensus       144 ~a~~~~g~~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------l~----------------~~  187 (284)
                      ......+....+.++||.++.|+++|++++++++++.+..                    ++                ++
T Consensus       247 ~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~  326 (425)
T 2r2n_A          247 LSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFY  326 (425)
T ss_dssp             GGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            2222223334456899999989999999999998876644                    11                22


Q ss_pred             HHHHHHHHHHHHhc-----------cCceeEEEEecccHHHHH-HHHHHHHCCcEEeecCCC-------CCEEEEEcCCC
Q psy11784        188 RPSGKYLVRPLGIN-----------LHIFWCLILLSITYYLYR-YTRRMKEAKIIVANEGEY-------GNVLLFLPAMC  248 (284)
Q Consensus       188 ~~~~~~l~~~L~~~-----------~G~~~~i~~~~~~~~~~~-~~~~l~~~Gv~~~~~~~~-------~~~lr~~p~l~  248 (284)
                      +++.+++.+.|++.           .|+++++++. ....... +.+.|.++||++.|+..+       .+++|+.++. 
T Consensus       327 ~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~-~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-  404 (425)
T 2r2n_A          327 SNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVK-GINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-  404 (425)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEET-TCSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-
T ss_pred             HHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeC-CCCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-
Confidence            33444555555541           3556667763 2222334 577888999999986432       3789998774 


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q psy11784        249 LTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       249 ~t~~~id~~~~~l~~~l~~~  268 (284)
                      .+++++++++++|.++++++
T Consensus       405 ~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          405 ASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            59999999999999988653

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.83  E-value=2.9e-19  Score=161.71  Aligned_cols=231  Identities=13%  Similarity=0.136  Sum_probs=152.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +||++.+++..   +| .+|++...+||+....+..... +          +..+|....  ..+.          .  +
T Consensus        86 ~~al~~~~~~~---~g-d~vl~~~p~y~~~~~~~~~~g~-~----------~~~v~~~~~--~~~~----------~--l  136 (364)
T 1lc5_A           86 TESIFTVASGL---KP-RRAMIVTPGFAEYGRALAQSGC-E----------IRRWSLREA--DGWQ----------L--T  136 (364)
T ss_dssp             HHHHHHHHHHH---CC-SEEEEEESCCTHHHHHHHHTTC-E----------EEEEECCGG--GTTC----------C--C
T ss_pred             HHHHHHHHHHc---CC-CeEEEeCCCcHHHHHHHHHcCC-e----------EEEEeCCcc--cccc----------h--h
Confidence            46888888877   45 7899999999997765543221 1          112232210  0010          0  1


Q ss_pred             HHHHHhcCCCeeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccCCCCcEEEe
Q psy11784         81 RNIMEAHRDNIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQGAVPDIITV  158 (284)
Q Consensus        81 ~~~i~~~~~~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g~~pDiv~~  158 (284)
                      +++++...+++++|+ .+| ++..|. ..|.+++++|.++|++||+++|+||+|++|++.|...... +.++....+.++
T Consensus       137 ~~~~~~~~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~  214 (364)
T 1lc5_A          137 DAILEALTPDLDCLFLCTP-NNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSL  214 (364)
T ss_dssp             TTHHHHCCTTCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEES
T ss_pred             HHHHHhccCCCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEEC
Confidence            122222224455555 566 666676 4688999999999999999999999999886544312221 223333445589


Q ss_pred             ccccc-CCcceeEEE-ecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-------
Q psy11784        159 GKPMG-NGMPIGAVI-TSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-------  201 (284)
Q Consensus       159 sK~l~-~G~p~gav~-~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-------  201 (284)
                      +|.++ +|+++|+++ +++++++.+..                            .++++++.+++.+.|+++       
T Consensus       215 sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  294 (364)
T 1lc5_A          215 TKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYP  294 (364)
T ss_dssp             TTTTTCTTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECC
T ss_pred             chhhcCCccceEEEEECCHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEECC
Confidence            99998 789999999 99998876644                            123455667777777654       


Q ss_pred             -cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 -LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 -~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                       .|.++++.+. .  ....+++.|.++||++.++..+    .+++|++.   .+++|++++++.|+++++++
T Consensus       295 ~~g~~~~~~~~-~--~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~~~~  360 (364)
T 1lc5_A          295 GRANYLLLRCE-R--EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERLLAALRNVLTGI  360 (364)
T ss_dssp             CSSSEEEEEES-C--TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHC---
T ss_pred             CCCeEEEEECC-C--cHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEe---CCHHHHHHHHHHHHHHhhcc
Confidence             4566666663 2  2446888899999999987543    47899974   36899999999998887654

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.83  E-value=7e-19  Score=159.59  Aligned_cols=226  Identities=13%  Similarity=0.048  Sum_probs=158.0

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      +|++.+++...  ....+|++...+||+....+..... .          +..+|..+.    +..+        +++++
T Consensus       103 ~al~~~~~~l~--~~gd~Vl~~~~~y~~~~~~~~~~g~-~----------~~~v~~~~~----~~~d--------~~~l~  157 (369)
T 3cq5_A          103 EILQQLLQAFG--GPGRTALGFQPSYSMHPILAKGTHT-E----------FIAVSRGAD----FRID--------MDVAL  157 (369)
T ss_dssp             HHHHHHHHHHC--STTCEEEEEESSCTHHHHHHHHTTC-E----------EEEEECCTT----SSCC--------HHHHH
T ss_pred             HHHHHHHHHhc--CCCCEEEEcCCChHHHHHHHHHcCC-E----------EEEecCCcC----CCCC--------HHHHH
Confidence            56777776652  2336799999999987665433211 1          112332211    1112        67788


Q ss_pred             HHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccC-CCCcEEEec
Q psy11784         82 NIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQG-AVPDIITVG  159 (284)
Q Consensus        82 ~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g-~~pDiv~~s  159 (284)
                      +.++..  ++++|++++.++..|...+    ++++.++|+.+++++|+||+|++|++... .+.. +.++ ..+++.+++
T Consensus       158 ~~i~~~--~~~~v~~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~i~~~s~s  230 (369)
T 3cq5_A          158 EEIRAK--QPDIVFVTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPS-ATTLLEKYPTKLVVSRTMS  230 (369)
T ss_dssp             HHHHHH--CCSEEEEESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCC-GGGGTTTCTTTEEEEEESS
T ss_pred             HHhhcc--CCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcc-hHHHHhhCCCCEEEEEech
Confidence            877632  4778889988988898776    67778888888899999999998865332 2222 2334 445677899


Q ss_pred             cccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-------cC
Q psy11784        160 KPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-------LH  203 (284)
Q Consensus       160 K~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-------~G  203 (284)
                      |+++ +|+++|++++++++++.+..                            .++++++.+++.+.|++.       .|
T Consensus       231 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  310 (369)
T 3cq5_A          231 KAFDFAGGRLGYFVANPAFIDAVMLVRLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEELGYAVVPSES  310 (369)
T ss_dssp             STTSCGGGCCEEEEECTHHHHHHHTTSCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHTCEEECCSS
T ss_pred             HhcCCcccceEEEEeCHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEECCCCC
Confidence            9998 78999999999998876644                            224556677777777653       45


Q ss_pred             ceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        204 IFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       204 ~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      .++++++ +  ....++.+.|.++||++.+++ ..+++|++++   +++|+++++++|+++++
T Consensus       311 ~~~~~~~-~--~~~~~l~~~l~~~gi~v~~~~-~~~~iRis~~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          311 NFVFFGD-F--SDQHAAWQAFLDRGVLIRDVG-IAGHLRTTIG---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             SEEEEEC-C--SSHHHHHHHHHHTTEECBCCS-CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEC-C--CCHHHHHHHHHHCCEEEEECC-CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence            5666665 2  245678899999999999863 2578999876   89999999999988763

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.83  E-value=6.1e-19  Score=159.28  Aligned_cols=226  Identities=14%  Similarity=0.046  Sum_probs=157.0

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +||++.+++..  .....+|++...+|++....+.....           .+..+|....    +.-|        .+++
T Consensus        94 t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~~----~~~d--------~~~l  148 (363)
T 3ffh_A           94 DELIELLTRVL--LDTTTNTVMATPTFVQYRQNALIEGA-----------EVREIPLLQD----GEHD--------LEGM  148 (363)
T ss_dssp             HHHHHHHHHHH--CSTTCEEEEEESSCHHHHHHHHHHTC-----------EEEEEECCTT----SCCC--------HHHH
T ss_pred             HHHHHHHHHHH--ccCCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCCCC----CCcC--------HHHH
Confidence            36777777755  23345788888888886554432211           0122333211    1112        5777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc----EE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD----II  156 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD----iv  156 (284)
                      ++.+.   +++++|+++..++..|... |.+.+.+|.+.|++ |+++|+||+|++|++ |+ +.........+|    +.
T Consensus       149 ~~~i~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~-~~~~~~~~~~~~~~i~~~  221 (363)
T 3ffh_A          149 LNAID---EKTTIVWICNPNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ-PEKHEKLVRTYKNLIITR  221 (363)
T ss_dssp             HHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC-CCCCGGGGGTCTTEEEEE
T ss_pred             HHhcc---cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc-ccCHHHHhhcCCCEEEEe
Confidence            77664   4688888888888888755 55666666666666 999999999998877 65 333333322344    55


Q ss_pred             Eeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHh-c-----
Q psy11784        157 TVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGI-N-----  201 (284)
Q Consensus       157 ~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~-~-----  201 (284)
                      ++||.++ .|+++|++++++++++.+..                            .++.+++.+++.+.|++ .     
T Consensus       222 s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~  301 (363)
T 3ffh_A          222 TFSKIYGLASARVGYGIADKEIIRQLNIVRPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLY  301 (363)
T ss_dssp             ESSSTTCCSSCCCEEEEECHHHHHHHHHTCCSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC
T ss_pred             echhhhcCchhceeeeecCHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceEC
Confidence            7899998 78999999999999887654                            22556677778888877 2     


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                        .|.++++.+. .  ...++.+.|.++||++.++..+  .+++|++++   |++|+++++++|+++
T Consensus       302 ~~~~~~~~~~~~-~--~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          302 PANGNFVLIDLG-I--EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKL  362 (363)
T ss_dssp             CCCSSEEEEECS-S--CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECC-C--CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHh
Confidence              5667677663 2  5678999999999999986543  579999866   999999999999875

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.83  E-value=3.2e-19  Score=162.09  Aligned_cols=232  Identities=16%  Similarity=0.079  Sum_probs=162.2

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchh-hhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNL-LLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      ++|++.|++..  .+...+|+....+|||.... .....+..          +..+|.+..  +  ..|        .++
T Consensus        84 ~~al~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~--~--~~d--------~~~  139 (393)
T 3kgw_A           84 HCAMETALFNL--LEPGDSFLTGTNGIWGMRAAEIADRIGAR----------VHQMIKKPG--E--HYT--------LQE  139 (393)
T ss_dssp             TTHHHHHHHHH--CCTTCEEEEEESSHHHHHHHHHHHHTTCE----------EEEEECCTT--C--CCC--------HHH
T ss_pred             HHHHHHHHHhc--CCCCCEEEEEeCCchhHHHHHHHHHcCCc----------eEEEeCCCC--C--CCC--------HHH
Confidence            57888888876  44556788888888865321 11111111          122333221  1  111        678


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      +++.++..  ++++|++++.++..|...+    +++|+++|++||+++|+||+|+ +|  +. .+..+.+  .+|+++++
T Consensus       140 l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~-~g--~~-~~~~~~~--~~d~~~~s  207 (393)
T 3kgw_A          140 VEEGLAQH--KPVLLFLVHGESSTGVVQP----LDGFGELCHRYQCLLLVDSVAS-LG--GV-PIYMDQQ--GIDIMYSS  207 (393)
T ss_dssp             HHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-TT--TS-CCCTTTT--TCCEEEEE
T ss_pred             HHHHHhhC--CCcEEEEeccCCcchhhcc----HHHHHHHHHHcCCEEEEECCcc-cc--Cc-ccchhhc--CCCEEEec
Confidence            88888732  5788999999999998776    8899999999999999999997 32  11 2333333  36777665


Q ss_pred             --ccccCCcceeEEEecHHHHHhch---------------------------------h---------------------
Q psy11784        160 --KPMGNGMPIGAVITSRKIAESLN---------------------------------C---------------------  183 (284)
Q Consensus       160 --K~l~~G~p~gav~~~~~i~~~~~---------------------------------~---------------------  183 (284)
                        |+++++.++|++++++++++.+.                                 .                     
T Consensus       208 ~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~  287 (393)
T 3kgw_A          208 SQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLEN  287 (393)
T ss_dssp             SSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             CcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence              99988778999999998876541                                 0                     


Q ss_pred             -hhhHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEEc-C
Q psy11784        184 -LDDNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGE--YGNVLLFLP-A  246 (284)
Q Consensus       184 -l~~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~--~~~~lr~~p-~  246 (284)
                       .++++++++++.+.|+++            .+.+..+.+ +......++.+.|+++ ||++.++..  .++++|+.+ +
T Consensus       288 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~  366 (393)
T 3kgw_A          288 CWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTV-PAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLG  366 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEEC-CTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeC-CCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecc
Confidence             225666777888888775            133445555 3334567899999988 999987532  357999998 8


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        247 MCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       247 l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      +.+|++++++++++|+++++++.
T Consensus       367 ~~~~~~~i~~~~~~l~~~l~~~~  389 (393)
T 3kgw_A          367 YNATTENVDRVAEALREALQHCP  389 (393)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHSC
T ss_pred             cCCCHHHHHHHHHHHHHHHHhhh
Confidence            77899999999999999998764

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.83  E-value=6e-19  Score=160.95  Aligned_cols=238  Identities=11%  Similarity=0.054  Sum_probs=158.7

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      ||++.+++...  ....+|++...+|||....+..... .          +..+|.... .+.+..+        .++|+
T Consensus        98 ~al~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g~-~----------~~~v~~~~~-~~~~~~d--------~~~l~  155 (390)
T 1d2f_A           98 YMVSELIRQWS--ETGEGVVIHTPAYDAFYKAIEGNQR-T----------VMPVALEKQ-ADGWFCD--------MGKLE  155 (390)
T ss_dssp             HHHHHHHHHSS--CTTCEEEEEESCCHHHHHHHHHTTC-E----------EEEEECEEC-SSSEECC--------HHHHH
T ss_pred             HHHHHHHHHhc--CCCCEEEEcCCCcHHHHHHHHHCCC-E----------EEEeecccC-CCccccC--------HHHHH
Confidence            56777777542  1236799999999997765543211 1          112222110 0011112        67888


Q ss_pred             HHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC---c-EEE
Q psy11784         82 NIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP---D-IIT  157 (284)
Q Consensus        82 ~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p---D-iv~  157 (284)
                      +.++.  .++++|++...++..|.+ .|.+++++|.++|++||+++|+||+|++|.+.|.......  .+.+   | +.+
T Consensus       156 ~~l~~--~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~--~~~~~~~d~~~s  230 (390)
T 1d2f_A          156 AVLAK--PECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS--NVARGDWALLTS  230 (390)
T ss_dssp             HHHTS--TTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGG--GTCCSSEEEEEC
T ss_pred             HHhcc--CCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHH--HcchhhHhhccC
Confidence            88762  257777765447767765 5788999999999999999999999999877665222221  2222   3 889


Q ss_pred             eccccc-CCcceeEEEec-HHHHHhch----------h-----------------------hhhHHHHHHHHHHHHHh-c
Q psy11784        158 VGKPMG-NGMPIGAVITS-RKIAESLN----------C-----------------------LDDNRPSGKYLVRPLGI-N  201 (284)
Q Consensus       158 ~sK~l~-~G~p~gav~~~-~~i~~~~~----------~-----------------------l~~~~~~~~~l~~~L~~-~  201 (284)
                      +||.++ +|+++|+++++ +++++.+.          .                       .++++++.+++.+.|++ +
T Consensus       231 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  310 (390)
T 1d2f_A          231 GSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAF  310 (390)
T ss_dssp             SHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999998 78999999985 66654321          1                       12455666777777776 3


Q ss_pred             ---------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 ---------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 ---------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                               .|++.++++........++.+.|. ++||++.++..+    .+++|++++.  +++++++++++|.+++++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~  388 (390)
T 1d2f_A          311 PELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGLINAIRA  388 (390)
T ss_dssp             SSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence                     234556666311124678899999 689999987543    4789998776  689999999999998876


Q ss_pred             H
Q psy11784        268 L  268 (284)
Q Consensus       268 ~  268 (284)
                      +
T Consensus       389 ~  389 (390)
T 1d2f_A          389 V  389 (390)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.83  E-value=1.3e-18  Score=159.21  Aligned_cols=181  Identities=18%  Similarity=0.235  Sum_probs=134.7

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCccccccccCC--
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQGA--  151 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~g~--  151 (284)
                      .++++++++... +++++|+++++++..|.+.+    +++|.++|++||+++|+||+|+ | ||+.|. .+. ..+++  
T Consensus       164 ~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~-~~~-~~~~~~~  237 (401)
T 2bwn_A          164 VAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGA-GVA-ERDGLMH  237 (401)
T ss_dssp             HHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSC-CHH-HHHTCGG
T ss_pred             HHHHHHHHHhhccCCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCc-eee-eccCccc
Confidence            577888887554 46899999999999998877    9999999999999999999999 3 577775 333 44444  


Q ss_pred             CCcE--EEecccccC-CcceeEEEecHHHHHhchh----------------------------------hhhHHHHHHHH
Q psy11784        152 VPDI--ITVGKPMGN-GMPIGAVITSRKIAESLNC----------------------------------LDDNRPSGKYL  194 (284)
Q Consensus       152 ~pDi--v~~sK~l~~-G~p~gav~~~~~i~~~~~~----------------------------------l~~~~~~~~~l  194 (284)
                      .+|+  .++||+++. |   |++++++++++.+..                                  .++++++.+++
T Consensus       238 ~~~i~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  314 (401)
T 2bwn_A          238 RIDIFNGTLAKAYGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVL  314 (401)
T ss_dssp             GCSEEEEESSSTTCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             cCcEEEeechhhccCCC---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            2454  489999983 4   788888777654431                                  12455667777


Q ss_pred             HHHHHhc-------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC-----CCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        195 VRPLGIN-------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY-----GNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       195 ~~~L~~~-------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~-----~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                      .+.|+++       .|.++++.+ +.......+++.|+ ++||++.++...     .+.+|++++..+|++|+++++++|
T Consensus       315 ~~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l  393 (401)
T 2bwn_A          315 KMRLKALGMPIIDHGSHIVPVVI-GDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAM  393 (401)
T ss_dssp             HHHHHHHTCCBCCCSSSCEEEEC-CCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHCCCcccCCCCCeEEEEe-CChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHH
Confidence            7777764       344666666 33345678899996 789999876431     258999999999999999999999


Q ss_pred             HHHHHH
Q psy11784        262 NRIFTS  267 (284)
Q Consensus       262 ~~~l~~  267 (284)
                      ++++++
T Consensus       394 ~~~~~~  399 (401)
T 2bwn_A          394 DLLWAR  399 (401)
T ss_dssp             HHHC--
T ss_pred             HHHHHh
Confidence            988754

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.83  E-value=1e-18  Score=158.63  Aligned_cols=231  Identities=15%  Similarity=0.106  Sum_probs=159.8

Q ss_pred             CcHHHHHHHHHHHc-----------cCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCc
Q psy11784          1 SEANDLALQLARAY-----------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADD   69 (284)
Q Consensus         1 seA~e~AlklAr~~-----------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (284)
                      ++|++.|++.++..           ++..+|+....+|++....+.... ..          +..+|....    +.-| 
T Consensus        96 t~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g-~~----------~~~v~~~~~----~~~d-  159 (397)
T 3f9t_A           96 TEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMD-LE----------YIYAPIKED----YTID-  159 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHT-CE----------EEEECBCTT----SSBC-
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcC-ce----------eEEEeeCCC----CcCC-
Confidence            47899999998875           235678888888887544433221 11          222333221    1111 


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCc--cccC------
Q psy11784         70 PQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG--RSGS------  141 (284)
Q Consensus        70 ~~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~g--r~G~------  141 (284)
                             .++|++.++..  ++++|++++.++..|.+.+    +++|.++|++||+++|+||+|+++.  .+|.      
T Consensus       160 -------~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~  226 (397)
T 3f9t_A          160 -------EKFVKDAVEDY--DVDGIIGIAGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKG  226 (397)
T ss_dssp             -------HHHHHHHHHHS--CCCEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTT
T ss_pred             -------HHHHHHHHhhc--CCeEEEEECCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhccccccccc
Confidence                   67888888732  5778888888888888876    9999999999999999999998642  2331      


Q ss_pred             --ccccccccCCCCcEEEecccccCCcceeEEEecHHH-HHhch---------------------h--------------
Q psy11784        142 --HFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKI-AESLN---------------------C--------------  183 (284)
Q Consensus       142 --~~~a~~~~g~~pDiv~~sK~l~~G~p~gav~~~~~i-~~~~~---------------------~--------------  183 (284)
                        ..+.... ++.+.+.+++|.+++|+++|+++++++. .+.+.                     .              
T Consensus       227 ~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  305 (397)
T 3f9t_A          227 VNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGRE  305 (397)
T ss_dssp             CCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHH
Confidence              0123333 5555556778999888899999886543 22110                     0              


Q ss_pred             -----hhhHHHHHHHHHHHHHhc--------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCC
Q psy11784        184 -----LDDNRPSGKYLVRPLGIN--------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLT  250 (284)
Q Consensus       184 -----l~~~~~~~~~l~~~L~~~--------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t  250 (284)
                           +++.+++.+++.+.|+++        .+.++.+.+ +   ....+.+.|.++||++.++.. .+.+|+.++..+|
T Consensus       306 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~gi~v~~~~~-~~~~Ri~~~~~~~  380 (397)
T 3f9t_A          306 GQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIED-E---DYKEVCKKLRDRGIYVSVCNC-VKALRIVVMPHIK  380 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEEC-T---THHHHHHHHHHTTCBCEECSS-SSEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEe-C---CHHHHHHHHHhCCeEEeccCC-CCEEEEEEcCCCC
Confidence                 336677888888888875        223334443 2   267899999999999988643 5899999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11784        251 TENVLFIVSTLNRIFT  266 (284)
Q Consensus       251 ~~~id~~~~~l~~~l~  266 (284)
                      ++++++++++|+++++
T Consensus       381 ~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          381 REHIDNFIEILNSIKR  396 (397)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999999998764

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.82  E-value=1.2e-18  Score=157.01  Aligned_cols=225  Identities=12%  Similarity=0.063  Sum_probs=151.8

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      +|++.+++..      .+|++...+||+....+..... .          +..+|....  ..+.          +++++
T Consensus        89 ~al~~~~~~~------d~vi~~~~~~~~~~~~~~~~g~-~----------~~~~~~~~~--~~~~----------~~~l~  139 (361)
T 3ftb_A           89 EIIELSISLF------EKILIIVPSYAEYEINAKKHGV-S----------VVFSYLDEN--MCID----------YEDII  139 (361)
T ss_dssp             HHHHHHHTTC------SEEEEEESCCTHHHHHHHHTTC-E----------EEEEECCTT--SCCC----------HHHHH
T ss_pred             HHHHHHHHHc------CcEEEecCChHHHHHHHHHcCC-e----------EEEeecCcc--cCCC----------HHHHH
Confidence            5566666554      6788888888886655443211 0          112232211  1111          46777


Q ss_pred             HHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE---Ee
Q psy11784         82 NIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII---TV  158 (284)
Q Consensus        82 ~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv---~~  158 (284)
                      +.++.    +.+|+++..++..|. ..|.+.+++|.++|++||+++|+||+|++|.+.+. .......+..++++   ++
T Consensus       140 ~~l~~----~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~i~~~s~  213 (361)
T 3ftb_A          140 SKIDD----VDSVIIGNPNNPNGG-LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPS-SSFVGEIKNYSCLFIIRAM  213 (361)
T ss_dssp             HHTTT----CSEEEEETTBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTT-SSSGGGTTTCSSEEEEEES
T ss_pred             HhccC----CCEEEEeCCCCCCCC-CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcc-cchhHhcccCCCEEEEeeC
Confidence            77752    555655544666676 45788899999999999999999999998866421 22223333334433   78


Q ss_pred             ccccc-CCcceeEEE-ecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-------
Q psy11784        159 GKPMG-NGMPIGAVI-TSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-------  201 (284)
Q Consensus       159 sK~l~-~G~p~gav~-~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-------  201 (284)
                      +|.++ +|+++|+++ +++++++.+..                            .++++++.+++.+.|+++       
T Consensus       214 sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  293 (361)
T 3ftb_A          214 TKFFAMPGIRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF  293 (361)
T ss_dssp             SSTTSCGGGCCEEEEESCHHHHHHHHTTSCTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE
T ss_pred             hhhcCCCCcceeEEEeCCHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec
Confidence            99998 789999999 89988887654                            224556667777777664       


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                        .|.++++.+. . ....++++.|.++||++.++..+    .+++|++++   ++++++++++.|+++.+
T Consensus       294 ~~~~~~~~~~~~-~-~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          294 SPHANFVLCRLE-N-ISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             CCSSSEEEEEES-S-SCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEcC-C-CCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence              3445566653 2 34678999999999999986532    578999865   88889999888887764

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.81  E-value=1.9e-18  Score=156.44  Aligned_cols=230  Identities=13%  Similarity=0.088  Sum_probs=160.2

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhhc-CCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLD-ISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +|++ |++..  .+...+|+..+.+|||....... ..+..          +..+|.+..  +  .-|        ++++
T Consensus        65 ~al~-~~~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~--~--~~d--------~~~l  119 (384)
T 3zrp_A           65 SAME-SVTSL--LKPNDKILVVSNGVFGDRWEQIFKRYPVN----------VKVLRPSPG--D--YVK--------PGEV  119 (384)
T ss_dssp             HHHH-HGGGG--CCTTCEEEEECSSHHHHHHHHHHTTSSCE----------EEEECCSTT--C--CCC--------HHHH
T ss_pred             HHHH-HHHhh--cCCCCEEEEecCCcchHHHHHHHHHcCCc----------EEEecCCCC--C--CCC--------HHHH
Confidence            5566 55432  34556788889999985433221 11111          222333221  1  111        6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec-
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG-  159 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s-  159 (284)
                      ++.++.  .++++|++++.++..|...+    +++|.++|++||+++|+||+|+ +|...   ....  ...+|+++++ 
T Consensus       120 ~~~i~~--~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~--~~~~d~~~~s~  187 (384)
T 3zrp_A          120 EEEVRK--SEYKLVALTHVETSTGVREP----VKDVINKIRKYVELIVVDGVSS-VGAEE---VKAE--EWNVDVYLTAS  187 (384)
T ss_dssp             HHHHHH--SCEEEEEEESEETTTTEECC----HHHHHHHHGGGEEEEEEECTTT-TTTSC---CCTT--TTTCSEEEEET
T ss_pred             HHHHHh--CCCcEEEEeCCCCCCceECc----HHHHHHHHHhcCCEEEEECccc-ccCcc---cccc--ccCCCEEEecC
Confidence            888873  24889999999999998877    9999999999999999999997 32211   1122  2347887655 


Q ss_pred             -ccccCCcceeEEEecHHHHHhc-------------------------------hh------------------------
Q psy11784        160 -KPMGNGMPIGAVITSRKIAESL-------------------------------NC------------------------  183 (284)
Q Consensus       160 -K~l~~G~p~gav~~~~~i~~~~-------------------------------~~------------------------  183 (284)
                       |+++++.++|++++++++++.+                               ..                        
T Consensus       188 ~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~  267 (384)
T 3zrp_A          188 QKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENR  267 (384)
T ss_dssp             TSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence             9998877899999999886655                               01                        


Q ss_pred             hhhHHHHHHHHHHHHHhc-------c-----CceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-CCCEEEEEcCCCCC
Q psy11784        184 LDDNRPSGKYLVRPLGIN-------L-----HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-YGNVLLFLPAMCLT  250 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~-------~-----G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~~~lr~~p~l~~t  250 (284)
                      .++.+++.+++.+.|+++       .     +.++.+.+. . ....++.+.|.++||.+.++.. ..+.+|+.++..+|
T Consensus       268 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~  345 (384)
T 3zrp_A          268 IKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILK-V-ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVT  345 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECS-S-SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECC-C-CCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCC
Confidence            225566777788888764       1     344455552 2 4567899999999999987542 22789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q psy11784        251 TENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       251 ~~~id~~~~~l~~~l~~~~~  270 (284)
                      ++++++++++|+++++++..
T Consensus       346 ~e~i~~~~~~l~~~l~~~~~  365 (384)
T 3zrp_A          346 PNDAIIAISVIERTLRKLGE  365 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999998753

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.81  E-value=1.2e-18  Score=159.65  Aligned_cols=236  Identities=14%  Similarity=0.137  Sum_probs=155.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcC-------CCCCCCchHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYR-------GEFSADDPQAA   73 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~   73 (284)
                      ++|++.+++..  .....+|+....+||+....+..... .          +..+|......       ..+.-+     
T Consensus        95 ~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~-~----------~~~~~~~~~~~~g~~~~~~~~~~d-----  156 (410)
T 3e2y_A           95 YGSLFNSIQGL--VDPGDEVIIMVPFYDCYEPMVRMAGA-V----------PVFIPLRSKPTDGMKWTSSDWTFD-----  156 (410)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-E----------EEEEECEECCCCSSCCBGGGEECC-----
T ss_pred             HHHHHHHHHHh--cCCCCEEEEeCCCchhhHHHHHHcCC-E----------EEEEeccccccccccccccCCcCC-----
Confidence            36777777765  23346788888889886654433211 1          11122110000       001111     


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC---
Q psy11784         74 QKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG---  150 (284)
Q Consensus        74 ~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g---  150 (284)
                         .+++++.+.   +++++|++++.++..|... +++.+++|.++|++||+++|+||+|++|.+.|..........   
T Consensus       157 ---~~~l~~~~~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~  229 (410)
T 3e2y_A          157 ---PRELESKFS---SKTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMW  229 (410)
T ss_dssp             ---HHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCG
T ss_pred             ---HHHHHhhcC---CCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCcc
Confidence               566666553   4688999998888888754 788899999999999999999999999887775222333322   


Q ss_pred             -CCCcEEEeccccc-CCcceeEEEecHHHHHhchh--------------------h------------------hhHHHH
Q psy11784        151 -AVPDIITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------L------------------DDNRPS  190 (284)
Q Consensus       151 -~~pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l------------------~~~~~~  190 (284)
                       ...++.++||.++ .|+++|++++++++++.+..                    +                  ++++++
T Consensus       230 ~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  309 (410)
T 3e2y_A          230 ERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVK  309 (410)
T ss_dssp             GGEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHH
T ss_pred             CeEEEEecchhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence             2234457899998 78999999999998876643                    1                  133455


Q ss_pred             HHHHHHHHHhc--------cCceeEEEEeccc----------HHHHHHHHHHH-HCCcEEeecCCC---------CCEEE
Q psy11784        191 GKYLVRPLGIN--------LHIFWCLILLSIT----------YYLYRYTRRMK-EAKIIVANEGEY---------GNVLL  242 (284)
Q Consensus       191 ~~~l~~~L~~~--------~G~~~~i~~~~~~----------~~~~~~~~~l~-~~Gv~~~~~~~~---------~~~lr  242 (284)
                      .+++.+.|+++        .|+++++++....          ....++++.++ ++||++.++..+         .+++|
T Consensus       310 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iR  389 (410)
T 3e2y_A          310 RDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVR  389 (410)
T ss_dssp             HHHHHHHHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEE
T ss_pred             HHHHHHHHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEE
Confidence            66667777664        4566666664110          11346777665 679999987543         37899


Q ss_pred             EEcCCCCCHHHHHHHHHHHHH
Q psy11784        243 FLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       243 ~~p~l~~t~~~id~~~~~l~~  263 (284)
                      |+  +..++++|++++++|.+
T Consensus       390 is--~~~~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          390 FC--FIKKDSTLDAAEEIFRA  408 (410)
T ss_dssp             EE--CCCCHHHHHHHHHHHHT
T ss_pred             EE--EcCCHHHHHHHHHHHHh
Confidence            97  56699999999999864

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.81  E-value=2.2e-18  Score=155.89  Aligned_cols=225  Identities=14%  Similarity=0.155  Sum_probs=151.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +||++.+++.... .|+.+|+....+||+....+..... .          +..+|..+    .+..|        ++++
T Consensus        85 ~~ai~~~~~~~~~-~g~d~Vl~~~p~~~~~~~~~~~~g~-~----------~~~v~~~~----~~~~d--------~~~l  140 (356)
T 1fg7_A           85 DEGIELLIRAFCE-PGKDAILYCPPTYGMYSVSAETIGV-E----------CRTVPTLD----NWQLD--------LQGI  140 (356)
T ss_dssp             HHHHHHHHHHHCC-TTTCEEEECSSSCTHHHHHHHHHTC-E----------EEECCCCT----TSCCC--------HHHH
T ss_pred             HHHHHHHHHHHhC-CCCCEEEEeCCChHHHHHHHHHcCC-E----------EEEeeCCC----CCCCC--------HHHH
Confidence            3677777776532 3547899999999997655443211 1          11223221    11112        5566


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccCCCCcEEEec
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQGAVPDIITVG  159 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g~~pDiv~~s  159 (284)
                      ++.++    ++.+|++...++..|.+ .|.+.+++|.++|+ ||+++|+||+|++|++... .+.. +.++....+.++|
T Consensus       141 ~~~i~----~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~-~~~~~~~~~~~i~~~s~s  213 (356)
T 1fg7_A          141 SDKLD----GVKVVYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQAS-LAGWLAEYPHLAILRTLS  213 (356)
T ss_dssp             HTSCT----TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGC-SGGGTTTCTTEEEEEESS
T ss_pred             HHHhc----CCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCc-HHHHHhhCCCEEEEecch
Confidence            55543    57778877777777865 57899999999999 9999999999998864222 2222 2233334456899


Q ss_pred             cccc-CCcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc-------
Q psy11784        160 KPMG-NGMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN-------  201 (284)
Q Consensus       160 K~l~-~G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~-------  201 (284)
                      |.++ .|+++|++++++++++.+..                              .++++++.+++.+.|+++       
T Consensus       214 K~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  293 (356)
T 1fg7_A          214 KAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVF  293 (356)
T ss_dssp             STTCCGGGCCEEEEECHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC
T ss_pred             HhhcCchhhhEEEEeCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEC
Confidence            9998 78999999999999887654                              113445556677777653       


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHHHCCcEEee-cCCC--CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMKEAKIIVAN-EGEY--GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~-~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                        .|.++++.+ +   ...++++.|.++||++.+ +..+  .+++|++++   +++|+++++++|++
T Consensus       294 ~~~~~~~~~~~-~---~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          294 DSETNYILARF-K---ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA  353 (356)
T ss_dssp             CCSSSEEEEEE-T---THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEEC-C---CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHh
Confidence              344555555 2   456789999999999998 4332  368999875   68999999998864

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.81  E-value=4.6e-19  Score=162.85  Aligned_cols=234  Identities=12%  Similarity=0.085  Sum_probs=152.3

Q ss_pred             CcHHHHHHHHHHHccCC-----ccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHH
Q psy11784          1 SEANDLALQLARAYTGR-----QNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~~~~r-----~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
                      ++|++.++++++.+...     .+|++...+||+....+.......          +..+|....  ..+..+       
T Consensus       109 ~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~----------~~~~~~~~~--~~~~~d-------  169 (412)
T 1ajs_A          109 TGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKD----------IRSYRYWDT--EKRGLD-------  169 (412)
T ss_dssp             HHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSC----------EEEEECEET--TTTEEC-------
T ss_pred             HHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCce----------eEEEeeecC--CCCccC-------
Confidence            47899999887766444     789999999999765544332110          111222100  011111       


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcccc---CccccccccCCC
Q psy11784         76 YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG---SHFWAFQTQGAV  152 (284)
Q Consensus        76 ~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G---~~~~a~~~~g~~  152 (284)
                       .+++++.+...+.++.++++...++..|. .++.+++++|.++|++||+++|+||+|++|++.|   . ++....+...
T Consensus       170 -~~~l~~~l~~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~-~~~~~~~~~~  246 (412)
T 1ajs_A          170 -LQGFLSDLENAPEFSIFVLHACAHNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKD-AWAIRYFVSE  246 (412)
T ss_dssp             -HHHHHHHHHHSCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHH-THHHHHHHHT
T ss_pred             -HHHHHHHHHhCCCCcEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCccccc-chHHHHHhcc
Confidence             67788888754445666655555555665 6789999999999999999999999999998765   3 3344333223


Q ss_pred             Cc----EEEecccccC-CcceeEEEe---cHHH----HHhchh--------------------hh---------------
Q psy11784        153 PD----IITVGKPMGN-GMPIGAVIT---SRKI----AESLNC--------------------LD---------------  185 (284)
Q Consensus       153 pD----iv~~sK~l~~-G~p~gav~~---~~~i----~~~~~~--------------------l~---------------  185 (284)
                      +|    +.++||.++. |+++|++++   ++++    ++.+..                    ++               
T Consensus       247 ~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  326 (412)
T 1ajs_A          247 GFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTM  326 (412)
T ss_dssp             TCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            44    4588999997 999999999   7763    332211                    11               


Q ss_pred             --hHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCH
Q psy11784        186 --DNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTT  251 (284)
Q Consensus       186 --~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~  251 (284)
                        +++++++++.+.|+++            .|++.++.+ +    ...+.+.+.++||++.++      +|++++. +|+
T Consensus       327 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~l~~~gv~v~~~------~Ris~~~-~~~  394 (412)
T 1ajs_A          327 ADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL-N----PKQVEYLINQKHIYLLPS------GRINMCG-LTT  394 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC-C----HHHHHHHHHTTCEECCTT------SEEEGGG-CCT
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC-C----HHHHHHHHHhCCEEecCC------cEEEeee-CCH
Confidence              2334555666666552            123333322 1    334445566889999852      5887663 599


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy11784        252 ENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       252 ~~id~~~~~l~~~l~~~  268 (284)
                      +++++++++|+++++++
T Consensus       395 ~~i~~~~~~l~~~l~~~  411 (412)
T 1ajs_A          395 KNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             TTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999988754

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.81  E-value=1.7e-18  Score=158.42  Aligned_cols=232  Identities=13%  Similarity=0.104  Sum_probs=161.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchh-hhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNL-LLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      ++|++.|++..  .....+|++...+|||.... .....+..          +..+|.+..    +.-|        .++
T Consensus        74 t~al~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~----~~~d--------~~~  129 (411)
T 3nnk_A           74 RAGIEAILVSA--IRPGDKVLVPVFGRFGHLLCEIARRCRAE----------VHTIEVPWG----EVFT--------PDQ  129 (411)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEEECSHHHHHHHHHHHHTTCE----------EEEEECCTT----CCCC--------HHH
T ss_pred             HHHHHHHHHHh--cCCCCEEEEecCCchHHHHHHHHHHcCCe----------EEEEecCCC----CCCC--------HHH
Confidence            36788888877  44567899999999985321 11111111          222343221    1111        678


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe-
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV-  158 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~-  158 (284)
                      |++.++..  ++++|++++.++..|.+.+    +++|.++|++||+++|+||+|+ +|..   .+....+  .+|++++ 
T Consensus       130 l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~---~~~~~~~--~~d~~~~s  197 (411)
T 3nnk_A          130 VEDAVKRI--RPRLLLTVQGDTSTTMLQP----LAELGEICRRYDALFYTDATAS-LGGN---PLETDVW--GLDAVSAG  197 (411)
T ss_dssp             HHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-BTTB---CCCTTTT--TCSEEECC
T ss_pred             HHHHHhhC--CCeEEEEeCCCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-cCCc---ccchhcc--CCcEEEec
Confidence            88888732  5789999999999998876    8899999999999999999986 3221   1233333  3566654 


Q ss_pred             -cccccCCcceeEEEecHHHHHhch-------------------------------------h-----------------
Q psy11784        159 -GKPMGNGMPIGAVITSRKIAESLN-------------------------------------C-----------------  183 (284)
Q Consensus       159 -sK~l~~G~p~gav~~~~~i~~~~~-------------------------------------~-----------------  183 (284)
                       +|+++++.++|++++++++++.+.                                     .                 
T Consensus       198 ~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  277 (411)
T 3nnk_A          198 MQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGAR  277 (411)
T ss_dssp             STTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHH
T ss_pred             CccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHH
Confidence             599887778999999988865321                                     0                 


Q ss_pred             --------------hhhHHHHHHHHHHHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecC--
Q psy11784        184 --------------LDDNRPSGKYLVRPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEG--  235 (284)
Q Consensus       184 --------------l~~~~~~~~~l~~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~--  235 (284)
                                    .++.+++.+++.+.|+++           .+.++.+.+ +......++.+.|+++ ||.+.++.  
T Consensus       278 ~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~gi~v~~g~~~  356 (411)
T 3nnk_A          278 ECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVI-PQGINGDQARKLMLEDFGIEIGTSFGP  356 (411)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEEC-CTTCCHHHHHHHHHHHHSEEEEECCGG
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEEC-CCCCCHHHHHHHHHHhcCeEEeCccCC
Confidence                          225556677777888764           134455555 3333567889999876 99998753  


Q ss_pred             CCCCEEEEEc-CCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        236 EYGNVLLFLP-AMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       236 ~~~~~lr~~p-~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      ..++.+|+.+ +...|++++++++++|+++++++.
T Consensus       357 ~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~  391 (411)
T 3nnk_A          357 LHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK  391 (411)
T ss_dssp             GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence            2357999998 888899999999999999998764

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.81  E-value=1.1e-18  Score=157.98  Aligned_cols=229  Identities=11%  Similarity=0.084  Sum_probs=151.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhh-cCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLL-DISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      ++|++.+++...  ....+||+...+||+...... ...+..          +..+|.+..    +..|        .++
T Consensus        81 t~al~~~~~~~~--~~gd~vi~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~----~~~d--------~~~  136 (376)
T 3f0h_A           81 TGSMEAVVMNCF--TKKDKVLVIDGGSFGHRFVQLCEIHEIP----------YVALKLEHG----KKLT--------KEK  136 (376)
T ss_dssp             HHHHHHHHHHHC--CTTCCEEEEESSHHHHHHHHHHHHTTCC----------EEEEECCTT----CCCC--------HHH
T ss_pred             hHHHHHHHHhcc--CCCCeEEEEeCChhhHHHHHHHHHcCCc----------eEEEeCCCC----CCCC--------HHH
Confidence            467888887663  345678888888888543211 111111          122333221    1112        566


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      +++.+   .+++++|++++.++..|.+.+    +++|.++|++||+++|+||+|+++++.    +..+.+++...+.+++
T Consensus       137 l~~~~---~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~~d~~~~s~~  205 (376)
T 3f0h_A          137 LYEYD---NQNFTGLLVNVDETSTAVLYD----TMMIGEFCKKNNMFFVCDCVSAFLADP----FNMNECGADVMITGSQ  205 (376)
T ss_dssp             HHTTT---TSCCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTCSEEEEETT
T ss_pred             HHHhh---ccCceEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEEcCccccCcc----ccccccCccEEEecCc
Confidence            66644   356889999999999998877    999999999999999999999865442    2334455544455667


Q ss_pred             ccccCCcceeEEEecHHHHHhchh-------------------------------------h-------------hhHHH
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC-------------------------------------L-------------DDNRP  189 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~-------------------------------------l-------------~~~~~  189 (284)
                      |+++++.++|++++++++++.+..                                     +             ++.++
T Consensus       206 K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~  285 (376)
T 3f0h_A          206 KVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIAS  285 (376)
T ss_dssp             TTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             ccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            999876678999999887664420                                     1             12233


Q ss_pred             HHHHHHHHHHhc---------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecC--CCCCEEEEEcCCCCCHHHHHHH
Q psy11784        190 SGKYLVRPLGIN---------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEG--EYGNVLLFLPAMCLTTENVLFI  257 (284)
Q Consensus       190 ~~~~l~~~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~--~~~~~lr~~p~l~~t~~~id~~  257 (284)
                      +.+++.+.|+++         .+.++.+.  +......++.+.|.++ ||++.++.  ..++++|+.++..+|++|++++
T Consensus       286 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~  363 (376)
T 3f0h_A          286 QAADFRAKIKDLPFELVSESPANGVTSVH--PTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTL  363 (376)
T ss_dssp             HHHHHHHHTTTSSEEECCSSBBTTEEEEE--ESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCccCccccCceEEEEe--CCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHH
Confidence            444444444442         11111121  2233567899999988 99998763  2357899999999999999999


Q ss_pred             HHHHHHHHH
Q psy11784        258 VSTLNRIFT  266 (284)
Q Consensus       258 ~~~l~~~l~  266 (284)
                      +++|+++++
T Consensus       364 ~~~l~~~l~  372 (376)
T 3f0h_A          364 VNAFKDLQK  372 (376)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.81  E-value=1.1e-17  Score=151.61  Aligned_cols=233  Identities=10%  Similarity=0.082  Sum_probs=160.0

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchh-hhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNL-LLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      ++|++.|++..  .....+|++...+|||.+.. .....+..          +..+|.+..    +..|        .++
T Consensus        81 t~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~----~~~d--------~~~  136 (386)
T 2dr1_A           81 TGIMEASIRNG--VSKGGKVLVTIIGAFGKRYKEVVESNGRK----------AVVLEYEPG----KAVK--------PED  136 (386)
T ss_dssp             HHHHHHHHHHH--SCTTCEEEEEESSHHHHHHHHHHHHTTCE----------EEEEECCTT----CCCC--------HHH
T ss_pred             HHHHHHHHHHh--hcCCCeEEEEcCCchhHHHHHHHHHhCCc----------eEEEecCCC----CCCC--------HHH
Confidence            46777777765  23456899999999984211 11111111          122333221    1112        678


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      |++.+++ .+++++|++++.++..|.+.+    +++|.++|++||+++|+||+|+. |...   +....  ..+|++++|
T Consensus       137 l~~~l~~-~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~-~~~~---~~~~~--~~~di~~~s  205 (386)
T 2dr1_A          137 LDDALRK-NPDVEAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAM-GGAD---IKFDK--WGLDVVFSS  205 (386)
T ss_dssp             HHHHHHH-CTTCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTB-TTBC---CCTTT--TTCSEEEEE
T ss_pred             HHHHHhc-CCCCcEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEccccc-cCcc---ccccc--cCCcEEEEe
Confidence            8888863 235889999999999998876    89999999999999999999973 3221   22222  347888766


Q ss_pred             --ccccCCcceeEEEecHHHHHhc---------------------hh-----------------h-------------hh
Q psy11784        160 --KPMGNGMPIGAVITSRKIAESL---------------------NC-----------------L-------------DD  186 (284)
Q Consensus       160 --K~l~~G~p~gav~~~~~i~~~~---------------------~~-----------------l-------------~~  186 (284)
                        |+++++.++|++++++++++.+                     ..                 +             ++
T Consensus       206 ~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~  285 (386)
T 2dr1_A          206 SQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEM  285 (386)
T ss_dssp             TTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence              9999765689999998876543                     11                 1             13


Q ss_pred             HHHHHHHHHHHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHH
Q psy11784        187 NRPSGKYLVRPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~  253 (284)
                      ++++.+++.+.|+++           .+.++++.+ +......++++.|.++||.+.++..  ..+.+|+.++..+|+++
T Consensus       286 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~  364 (386)
T 2dr1_A          286 YEKRAKMVREGVREIGLDILAEPGHESPTITAVLT-PPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFED  364 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEEC-CTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHH
T ss_pred             HHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEc-CCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHH
Confidence            445566677777654           144556665 3233467899999999999987642  24799999998899999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy11784        254 VLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       254 id~~~~~l~~~l~~~~  269 (284)
                      +++++++|+++++++.
T Consensus       365 i~~~~~~l~~~~~~~~  380 (386)
T 2dr1_A          365 IQEMLDNLREVINELK  380 (386)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999998764

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.81  E-value=2.9e-18  Score=158.56  Aligned_cols=237  Identities=9%  Similarity=0.071  Sum_probs=159.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhc-CCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLD-ISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      ++|++.+++...  ....+|++.+.+||+....+.. .. ..          +..+|....   .+..+        .++
T Consensus       123 ~~al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~g-~~----------~~~~~~~~~---~~~~d--------~~~  178 (430)
T 2x5f_A          123 THGLSLVGDLFV--NQDDTILLPEHNWGNYKLVFNTRNG-AN----------LQTYPIFDK---DGHYT--------TDS  178 (430)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEESSCCTHHHHHHTTTTC-CE----------EEEECCBCT---TSCBC--------SHH
T ss_pred             hHHHHHHHHHHh--CCCCEEEEcCCcCccHHHHHHHhcC-Ce----------EEEEeccCc---cCCcC--------HHH
Confidence            367777777552  2236799999999997655433 21 11          112232110   01112        577


Q ss_pred             HHHHHHhcCCCeeE-EEEcceecCCCcccCChhHHHHHHHHHHH-----hCCEEEEecccccCccccCccccc--cccCC
Q psy11784         80 ARNIMEAHRDNIAT-LICEPVFVVHGAVVPPPGWLSLMYDYIHE-----IGGVVIADEIQCGMGRSGSHFWAF--QTQGA  151 (284)
Q Consensus        80 l~~~i~~~~~~vaa-vi~Epv~~~~G~~~~~~~~l~~l~~l~~~-----~g~llI~DEv~tG~gr~G~~~~a~--~~~g~  151 (284)
                      +++.++..+.++.+ ++.+| ++..|. .++.+++++|.++|++     ||+++|+||+|++|.+.|..+...  ...+.
T Consensus       179 l~~~l~~~~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~  256 (430)
T 2x5f_A          179 LVEALQSYNKDKVIMILNYP-NNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNL  256 (430)
T ss_dssp             HHHHHHHCCSSEEEEEECSS-CTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTT
T ss_pred             HHHHHHhcCCCCEEEEEcCC-CCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhc
Confidence            88888754445555 45566 777775 5689999999999999     999999999999887666411121  22233


Q ss_pred             CCc------EEEeccccc-CCcceeEEEe---cHHHHHhchh------------------------hh------------
Q psy11784        152 VPD------IITVGKPMG-NGMPIGAVIT---SRKIAESLNC------------------------LD------------  185 (284)
Q Consensus       152 ~pD------iv~~sK~l~-~G~p~gav~~---~~~i~~~~~~------------------------l~------------  185 (284)
                      .++      +.++||.++ .|+++|++++   ++++++.+..                        ++            
T Consensus       257 ~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  336 (430)
T 2x5f_A          257 HSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQN  336 (430)
T ss_dssp             CCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             cCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHH
Confidence            444      447899998 7899999999   8888765432                        22            


Q ss_pred             --hHHHHHHHHHHHHH----hc--------cCceeEEEEecccHHHHHHHHHHHH-CCcEEeecCCCCCEEEEEcCCCCC
Q psy11784        186 --DNRPSGKYLVRPLG----IN--------LHIFWCLILLSITYYLYRYTRRMKE-AKIIVANEGEYGNVLLFLPAMCLT  250 (284)
Q Consensus       186 --~~~~~~~~l~~~L~----~~--------~G~~~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~lr~~p~l~~t  250 (284)
                        +++++.+++.+.|+    +.        .|+++++.+.  .....++++.|.+ +||++.++  ..+.+|++++. .+
T Consensus       337 ~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g--~~~~iRis~~~-~~  411 (430)
T 2x5f_A          337 IQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH--DVDPEALRKHLIDKYSIGVIAL--NATDIRIAFSC-VE  411 (430)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES--SSCHHHHHHHHHHHHCEECEEC--SSSEEEEEGGG-SC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC--CCCHHHHHHHHHHhCCEEEecC--CCCeEEEEEec-CC
Confidence              12233455666666    32        3455677763  2346788999997 99999986  35789999886 49


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy11784        251 TENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       251 ~~~id~~~~~l~~~l~~~  268 (284)
                      ++++++++++|.++++++
T Consensus       412 ~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          412 KDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             GGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999998765

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.80  E-value=3.5e-18  Score=159.59  Aligned_cols=248  Identities=13%  Similarity=0.140  Sum_probs=153.2

Q ss_pred             CcHHHHHHHHHHHc---cCCcc--EEEEcCCCc-ccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCC--CCCchHH
Q psy11784          1 SEANDLALQLARAY---TGRQN--IVVVDAAYH-GTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEF--SADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~---~~r~~--il~~~~~yH-G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   72 (284)
                      |||++.|++.++.+   +|+.+  ||..  .|| +.+..+....+....... ..     ...+.....++  ..|    
T Consensus       101 t~A~~~al~~~~~~~~~~Gd~~~~viv~--~~~~~~~~~~~~~~g~~~~~~~-~~-----~~~~~~~~~~~~~~~d----  168 (467)
T 1ax4_A          101 RGAENILFPVLLKYKQKEGKAKNPVFIS--NFHFDTTAAHVELNGCKAINIV-TE-----KAFDSETYDDWKGDFD----  168 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSCEEEE--SSCCHHHHHHHHHTTCEEEECB-CG-----GGGCTTSCCTTTTCBC----
T ss_pred             HHHHHHHHHHHHHhhccCCCccceEEEe--ccccchhhHHHhccCCceeccc-cc-----ccccccccCCcccccC----
Confidence            48999999999886   67651  4443  555 554444443322111000 00     00000000111  112    


Q ss_pred             HHHHHHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc---C-------ccccC
Q psy11784         73 AQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG---M-------GRSGS  141 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG---~-------gr~G~  141 (284)
                          .++|++.++... +++++|++||+++.+|..+++.+++++|+++|++||++||+||++..   +       +..|.
T Consensus       169 ----~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~  244 (467)
T 1ax4_A          169 ----IKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA  244 (467)
T ss_dssp             ----HHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC
T ss_pred             ----HHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC
Confidence                678888887443 35999999999998866788999999999999999999999998752   0       12221


Q ss_pred             ccccccccC----CCCcEE--EecccccCCcceeEEE-ec-H-HHHHhchh-----------------------------
Q psy11784        142 HFWAFQTQG----AVPDII--TVGKPMGNGMPIGAVI-TS-R-KIAESLNC-----------------------------  183 (284)
Q Consensus       142 ~~~a~~~~g----~~pDiv--~~sK~l~~G~p~gav~-~~-~-~i~~~~~~-----------------------------  183 (284)
                         .....+    ..+|++  +++|++  |+|+|+++ ++ + ++++.+..                             
T Consensus       245 ---~~~~~~~~~~~~~d~~~~s~sK~~--g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  319 (467)
T 1ax4_A          245 ---TIKEVIFDMYKYADALTMSAKKDP--LLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG  319 (467)
T ss_dssp             ---CHHHHHHHHGGGCSEEEEETTSTT--CCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT
T ss_pred             ---chhhhhhhhccccceEEEeccccC--CCCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHh
Confidence               000000    125665  456765  45765555 55 5 66543211                             


Q ss_pred             -----hhhHHHHHHHHHHHHHhc--------cCceeEEE-------EecccHHHHHHHHHH-HHCCcEEeecCC------
Q psy11784        184 -----LDDNRPSGKYLVRPLGIN--------LHIFWCLI-------LLSITYYLYRYTRRM-KEAKIIVANEGE------  236 (284)
Q Consensus       184 -----l~~~~~~~~~l~~~L~~~--------~G~~~~i~-------~~~~~~~~~~~~~~l-~~~Gv~~~~~~~------  236 (284)
                           +++..++++++.+.|++.        .|.++++.       +.........+++.| .++||.+.+++.      
T Consensus       320 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~  399 (467)
T 1ax4_A          320 TEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD  399 (467)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccc
Confidence                 112234566777777653        35555665       211112467889998 789999987321      


Q ss_pred             ---C------CCEEEEEcC-CCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        237 ---Y------GNVLLFLPA-MCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       237 ---~------~~~lr~~p~-l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                         +      .+++||+|| ..+|++|+++++++|+++++++.
T Consensus       400 ~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~  442 (467)
T 1ax4_A          400 PATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA  442 (467)
T ss_dssp             TTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred             cccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence               1      279999999 56899999999999999998764

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.80  E-value=6.9e-19  Score=160.59  Aligned_cols=239  Identities=12%  Similarity=0.060  Sum_probs=157.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCC----CcCCCC-CCCchHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPD----TYRGEF-SADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~   75 (284)
                      |+|+++++++.   ..+.+||++..+|||.+.......       .+....+.+++.+.    .+...+ ..+       
T Consensus        61 t~a~~~~~~~~---~~gd~vi~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~g~~~~~~~~~~~d-------  123 (379)
T 3ke3_A           61 TYGMEAVARQL---TIDEDCLIIRNGWFSYRWTQILEK-------GKFAKSSTVLTAERTEDTEAPKPFAPVD-------  123 (379)
T ss_dssp             HHHHHHHHHHH---CTTCEEEEEECSHHHHHHHHHHHH-------HCCSSEEEEEECEESSCCSSCCCEECCC-------
T ss_pred             hHHHHHHHHhC---CCCCeEEEEeCCchhHHHHHHHHH-------hCCCCceEEEeccccccccccCCCCCCC-------
Confidence            47888887653   456789999999999754322211       00000112233221    111111 111       


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         76 YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        76 ~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                       .+++++.++..  ++.+|++..+.+..|. ..|.+++++|.++|++||+++|+||+|+  |  +. .+..+.+++...+
T Consensus       124 -~~~l~~~i~~~--~~~~v~~~~~~~~~G~-~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~-~~~~~~~~~d~~~  194 (379)
T 3ke3_A          124 -IETAVAKIKED--KSAIVYAPHVETSSGI-ILSEEYIKALSEAVHSVGGLLVIDCIAS--G--CV-WLDMKELGIDVLI  194 (379)
T ss_dssp             -HHHHHHHHHHH--TCSEEEEESEETTTTE-ECCHHHHHHHHHHHHHTTCEEEEECTTC--T--TC-CCCHHHHTCSEEE
T ss_pred             -HHHHHHHHhhc--CCcEEEEEeecCCCce-eCCHHHHHHHHHHHHHcCCEEEEEeccc--C--Cc-cccccccCCCEEE
Confidence             67888888532  3556777777777775 4578899999999999999999999997  3  22 4555666765555


Q ss_pred             EEecccccCCcceeEEEecHHHHHhch------------------------------h----------------------
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLN------------------------------C----------------------  183 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~------------------------------~----------------------  183 (284)
                      .+++|+++++.++|++++++++++.+.                              .                      
T Consensus       195 ~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~  274 (379)
T 3ke3_A          195 SAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFD  274 (379)
T ss_dssp             ECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             ecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHH
Confidence            566799987767899999988754321                              0                      


Q ss_pred             --hhhHHHHHHHHHHHHHhccCc------------eeEEEEecccHHHHHHHHHHHHCCcEEeecCC-------CCCEEE
Q psy11784        184 --LDDNRPSGKYLVRPLGINLHI------------FWCLILLSITYYLYRYTRRMKEAKIIVANEGE-------YGNVLL  242 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~~G~------------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~lr  242 (284)
                        .++.+++++++++.|+++ |+            +..+..  +.. ...+.+.|.++||++.++.+       .++++|
T Consensus       275 ~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~--~~~-~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lR  350 (379)
T 3ke3_A          275 ILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYT--ERD-DMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFR  350 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEEC--SCH-HHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEcc--CCc-chHHHHHHHHCCeEEeCCccccccccCcCCEEE
Confidence              124456677777777764 21            112211  111 12236778899999987642       257999


Q ss_pred             EEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        243 FLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       243 ~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      ++++..+|++||++++++|+++++++.
T Consensus       351 is~~~~~t~~di~~~~~~l~~~l~~~~  377 (379)
T 3ke3_A          351 LGLFGLDKLTDIDGTVERFEKALDEVL  377 (379)
T ss_dssp             EECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             EeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998764

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.80  E-value=2.5e-18  Score=163.03  Aligned_cols=237  Identities=14%  Similarity=0.046  Sum_probs=164.1

Q ss_pred             CcHHHHHHHHHHHccC------CccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHH
Q psy11784          1 SEANDLALQLARAYTG------RQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQ   74 (284)
Q Consensus         1 seA~e~AlklAr~~~~------r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (284)
                      ++|++.|++.++...+      +.+|++...+|++....+.... ..          +..+|....    +.-|      
T Consensus       170 t~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G-~~----------v~~v~~~~~----~~~d------  228 (514)
T 3mad_A          170 TESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFG-IK----------LVRTPLDAD----YRAD------  228 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHT-CE----------EEEECBCTT----SCBC------
T ss_pred             HHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcC-Ce----------eEEeeeCCC----CCCC------
Confidence            4799999999988742      3688988888888544333221 11          223343221    1112      


Q ss_pred             HHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccC-----ccccC--cccccc
Q psy11784         75 KYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGM-----GRSGS--HFWAFQ  147 (284)
Q Consensus        75 ~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~-----gr~G~--~~~a~~  147 (284)
                        +++|++.++   +++++|++++.++..|.+.+    +++|.++|++||++||+||+|++|     +++|.  ..+...
T Consensus       229 --~~~Le~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~  299 (514)
T 3mad_A          229 --VAAMREAIT---PNTVVVAGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFR  299 (514)
T ss_dssp             --HHHHHHHCC---TTEEEEEEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTT
T ss_pred             --HHHHHHHhc---cCCEEEEEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccccc
Confidence              677888775   46899999999998898876    999999999999999999999976     33342  013334


Q ss_pred             ccCCCCcEEEecccccCCcceeEEEecHHHHHhch----------------------------h---------------h
Q psy11784        148 TQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLN----------------------------C---------------L  184 (284)
Q Consensus       148 ~~g~~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~----------------------------~---------------l  184 (284)
                      ..|+...+.+++|.+.+|+++|+++++++......                            .               +
T Consensus       300 ~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~  379 (514)
T 3mad_A          300 LEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDAT  379 (514)
T ss_dssp             STTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHH
Confidence            44553333345699888889999998876553210                            0               3


Q ss_pred             hhHHHHHHHHHHHHHhccC--------ceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcC-CCCCHHHHH
Q psy11784        185 DDNRPSGKYLVRPLGINLH--------IFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPA-MCLTTENVL  255 (284)
Q Consensus       185 ~~~~~~~~~l~~~L~~~~G--------~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~-l~~t~~~id  255 (284)
                      ++..++++++.+.|+++.|        .++.+..  ......++.+.|.++||++. +..+++.+|+.++ ...++++++
T Consensus       380 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~Gi~v~-g~~~~~~~Ri~~~~~~~~~e~i~  456 (514)
T 3mad_A          380 RRILQAADRLKAGVRAIPSLKILGDPLWVIAVAS--DELNIYQVMEEMAGRGWRLN-GLHRPPAFHVALTLRHTEPGVVD  456 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCEESSCCSSEEEEEC--SSSCHHHHHHHHHTTTCBCE-EETTTTEEEEECCGGGGSTTHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEeCCCeEEEEEeC--CCCCHHHHHHHHHhcCCEec-cCCCCCeEEEEEecCCCCHHHHH
Confidence            3667778888888887512        2333332  22346789999999999884 3334678999987 556779999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy11784        256 FIVSTLNRIFTSLQM  270 (284)
Q Consensus       256 ~~~~~l~~~l~~~~~  270 (284)
                      +++++|+++++++.+
T Consensus       457 ~~l~~L~~~l~~~~~  471 (514)
T 3mad_A          457 RFLADLQDAVAQVRA  471 (514)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988764

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.79  E-value=1.4e-18  Score=158.68  Aligned_cols=230  Identities=15%  Similarity=0.126  Sum_probs=150.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.++++.+.++...+|++...+||+....+......           +..+|....  ..+..+        .+++
T Consensus       101 ~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~-----------~~~~~~~~~--~~~~~d--------~~~l  159 (394)
T 2ay1_A          101 TGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLP-----------VQTYRYFDA--ETRGVD--------FEGM  159 (394)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCC-----------EEEEECEET--TTTEEC--------HHHH
T ss_pred             hhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCc-----------eEEEecccc--cCCccC--------HHHH
Confidence            4789999998887655567999999999976654432211           112222100  001111        6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC-cccccccc-CCCCcE---
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-HFWAFQTQ-GAVPDI---  155 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~~a~~~~-g~~pDi---  155 (284)
                      ++.++..+...+++++...++..|. .+|.+++++|.++|++||+++|+||+|++|++.|. .......+ ...+++   
T Consensus       160 ~~~l~~~~~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (394)
T 2ay1_A          160 KADLAAAKKGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIA  238 (394)
T ss_dssp             HHHHHTCCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEE
T ss_pred             HHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEE
Confidence            8888744334667777877877776 56899999999999999999999999999876541 02222222 123443   


Q ss_pred             EEeccccc-CCcceeEEEe---cHHHHHh----chh--------------------hh-----------------hHHHH
Q psy11784        156 ITVGKPMG-NGMPIGAVIT---SRKIAES----LNC--------------------LD-----------------DNRPS  190 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~---~~~i~~~----~~~--------------------l~-----------------~~~~~  190 (284)
                      .++||.++ +|+++|++++   ++++++.    +..                    ++                 +++++
T Consensus       239 ~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~  318 (394)
T 2ay1_A          239 ASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRL  318 (394)
T ss_dssp             EECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            37899999 7999999998   5654322    210                    11                 23344


Q ss_pred             HHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHH
Q psy11784        191 GKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       191 ~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~  258 (284)
                      .+++.+.|+++            .|+++++++.     ...+.+.+.++||++.++      +|++++ .+|++++++++
T Consensus       319 ~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~l~~~gi~v~~~------~Ris~~-~~~~~~i~~~~  386 (394)
T 2ay1_A          319 REQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT-----PEQVKRIKEEFGIYMVGD------SRINIA-GLNDNTIPILA  386 (394)
T ss_dssp             HHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC-----HHHHHHHHHHHCEECCTT------CEEEGG-GCCTTTHHHHH
T ss_pred             HHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC-----HHHHHHHHHhCCEEecCC------CeEEee-cCCHhhHHHHH
Confidence            55565655532            2445454441     235666777899999852      589877 57999999999


Q ss_pred             HHHHHH
Q psy11784        259 STLNRI  264 (284)
Q Consensus       259 ~~l~~~  264 (284)
                      ++|+++
T Consensus       387 ~~l~~~  392 (394)
T 2ay1_A          387 RAIIEV  392 (394)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            999765

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.79  E-value=2.8e-18  Score=156.96  Aligned_cols=232  Identities=12%  Similarity=0.141  Sum_probs=151.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccch--hhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVN--LLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |+|++.|++.+  .....+|++...+||+...  .+....+...          ..++.+-. ...+..|        .+
T Consensus        95 t~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~-~~~~~~d--------~~  153 (407)
T 2dkj_A           95 SQANMAVYMAL--MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLY----------KVVSYGVR-PDTELID--------LE  153 (407)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTTSHHHHHS----------EEEEECCC-TTTSSCC--------HH
T ss_pred             HHHHHHHHHHh--cCCCCEEEEecccccCccchHHHHHhcCceE----------EEEecCCC-cccCccC--------HH
Confidence            35778888877  3345678888888877631  2211111100          01111100 0011112        67


Q ss_pred             HHHHHHHhcCCCeeEEEE-cceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc-CccccCccccccccCCCCcEE
Q psy11784         79 AARNIMEAHRDNIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG-MGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG-~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++++.++..  ++++|++ +|.++   ...+    +++|.++|++||+++|+||+|++ +...|. ...  ..+ .+|++
T Consensus       154 ~l~~~l~~~--~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~--~~~-~~di~  220 (407)
T 2dkj_A          154 EVRRLALEH--RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGL-HPN--PLP-YAHVV  220 (407)
T ss_dssp             HHHHHHHHH--CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTC-SCC--CTT-TCSEE
T ss_pred             HHHHHHhhc--CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCc-cCC--ccc-cccEE
Confidence            788888632  4667777 78765   3333    89999999999999999999985 533443 211  112 27887


Q ss_pred             --EecccccCCcceeEEEec-HHHHHhchh---------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        157 --TVGKPMGNGMPIGAVITS-RKIAESLNC---------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       157 --~~sK~l~~G~p~gav~~~-~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                        +++|+++| .++|+++++ +++++.+..                                 .++.+++.+++.+.|++
T Consensus       221 ~~s~sK~l~g-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  299 (407)
T 2dkj_A          221 TSTTHKTLRG-PRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELAR  299 (407)
T ss_dssp             EEESSGGGCC-CSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccCCC-CCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence              78999984 467999999 788776543                                 22556667777777776


Q ss_pred             c---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--------CCCEEEEEcCCC----CCHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--------YGNVLLFLPAMC----LTTENVLFIVS  259 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--------~~~~lr~~p~l~----~t~~~id~~~~  259 (284)
                      +         .|.++++.+.........+.+.|.++||++.++..        ..+.+|++++..    +|++|++++++
T Consensus       300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~  379 (407)
T 2dkj_A          300 RGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAE  379 (407)
T ss_dssp             TTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHH
T ss_pred             CCceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHH
Confidence            4         34566666632112467788899999999987532        246899998763    79999999999


Q ss_pred             HHHHHHHH
Q psy11784        260 TLNRIFTS  267 (284)
Q Consensus       260 ~l~~~l~~  267 (284)
                      +|++++++
T Consensus       380 ~l~~~~~~  387 (407)
T 2dkj_A          380 LIDRALLE  387 (407)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999987

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.79  E-value=8.2e-18  Score=153.32  Aligned_cols=228  Identities=17%  Similarity=0.122  Sum_probs=157.6

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhh-cCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLL-DISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      ++|++.+++...  ....+|+....+||+.+.... ...+..          +..+|.+..    +..+        .++
T Consensus        95 t~al~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~----~~~d--------~~~  150 (393)
T 1vjo_A           95 TAAMEATIANAV--EPGDVVLIGVAGYFGNRLVDMAGRYGAD----------VRTISKPWG----EVFS--------LEE  150 (393)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESSHHHHHHHHHHHHTTCE----------EEEEECCTT----CCCC--------HHH
T ss_pred             HHHHHHHHHhcc--CCCCEEEEEcCChhHHHHHHHHHHcCCc----------eEEEecCCC----CCCC--------HHH
Confidence            468888888773  345689999999999432111 111111          122333221    1111        678


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      |++.++..  ++++|++++.++..|.+.+    +++|.++|++||+++|+||+|+ +|...   ..  .....+|+++.|
T Consensus       151 l~~~l~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~---~~--~~~~~~di~~~s  218 (393)
T 1vjo_A          151 LRTALETH--RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP---IF--LDAWGVDLAYSC  218 (393)
T ss_dssp             HHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC---CC--TTTTTCSEEECC
T ss_pred             HHHHHhhC--CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC---Cc--ccccCccEEEEc
Confidence            88888732  5778999999999998876    8999999999999999999998 66432   12  223568998766


Q ss_pred             --ccccCCcceeEEEecHHHHHhc------------------------h----h------------------------hh
Q psy11784        160 --KPMGNGMPIGAVITSRKIAESL------------------------N----C------------------------LD  185 (284)
Q Consensus       160 --K~l~~G~p~gav~~~~~i~~~~------------------------~----~------------------------l~  185 (284)
                        |+++++.++|++++++++++.+                        .    .                        .+
T Consensus       219 ~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~  298 (393)
T 1vjo_A          219 SQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQ  298 (393)
T ss_dssp             SSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHH
Confidence              9998766899999999877543                        0    1                        22


Q ss_pred             hHHHHHHHHHHHHHhc-------cC----ceeEEEEecccHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEEc-CCCCC
Q psy11784        186 DNRPSGKYLVRPLGIN-------LH----IFWCLILLSITYYLYRYTRRMKEA-KIIVANEGE--YGNVLLFLP-AMCLT  250 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~-------~G----~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~--~~~~lr~~p-~l~~t  250 (284)
                      +++++.+++.+.|+++       .|    .++.+.+ +......++++.|.++ ||++.++..  ..+.+|+.+ ++..+
T Consensus       299 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~  377 (393)
T 1vjo_A          299 RHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCI-PDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSR  377 (393)
T ss_dssp             HHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEEC-CTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCS
T ss_pred             HHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEc-CCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCCh
Confidence            4566777788888764       12    2334444 2233467899999988 999988643  357999995 56778


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11784        251 TENVLFIVSTLNRIF  265 (284)
Q Consensus       251 ~~~id~~~~~l~~~l  265 (284)
                      ++++++++++|.+++
T Consensus       378 ~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          378 KESVDQLIPALEQVL  392 (393)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            889999999998875

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.79  E-value=1.4e-17  Score=149.64  Aligned_cols=231  Identities=13%  Similarity=0.128  Sum_probs=156.8

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAAR   81 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (284)
                      +|++.+++...  ....+|+....+|++....+..... .          +..+|....    +.-|        .++++
T Consensus        79 ~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~g~-~----------~~~~~~~~~----~~~d--------~~~l~  133 (354)
T 3ly1_A           79 EGIRAAIEAYA--SLEAQLVIPELTYGDGEHFAKIAGM-K----------VTKVKMLDN----WAFD--------IEGLK  133 (354)
T ss_dssp             HHHHHHHHHHC--CTTCEEEEESSSCTHHHHHHHHTTC-E----------EEEECCCTT----SCCC--------HHHHH
T ss_pred             HHHHHHHHHHh--CCCCeEEECCCCchHHHHHHHHcCC-E----------EEEecCCCC----CCCC--------HHHHH
Confidence            56666666542  2235788888888886554432211 0          122333211    1112        67888


Q ss_pred             HHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc--cccc-ccc-CCCCcEEE
Q psy11784         82 NIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH--FWAF-QTQ-GAVPDIIT  157 (284)
Q Consensus        82 ~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~--~~a~-~~~-g~~pDiv~  157 (284)
                      +.++++ +++.+|+++..++..|.+. +.+.+++|.++| +||+++|+||+|++|.+.|..  .... ..+ +....+.+
T Consensus       134 ~~l~~~-~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  210 (354)
T 3ly1_A          134 AAVAAY-SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKT  210 (354)
T ss_dssp             HHHHTC-SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEE
T ss_pred             HHhccC-CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEee
Confidence            888632 4578888877777777654 667788888888 799999999999988766541  1111 112 33344557


Q ss_pred             eccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-------
Q psy11784        158 VGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-------  201 (284)
Q Consensus       158 ~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-------  201 (284)
                      ++|.++ .|+++|++++++++++.+..                            .++++++.+++.+.|++.       
T Consensus       211 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  290 (354)
T 3ly1_A          211 FSKIHAMAGMRVGYAVAHPTVIALMGRYVAGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDLKLPYLPS  290 (354)
T ss_dssp             SSSTTCCGGGCCEEEECCHHHHHHHGGGTTCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC
T ss_pred             ChhhccChhhhheeeecCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeECCC
Confidence            899998 78999999999999887654                            225566677777777664       


Q ss_pred             cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 ~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      .|.++++.+. .  ....+.+.|.++||++. +..  ..+.+|++..   +++|+++++++|++++++
T Consensus       291 ~~~~~~~~~~-~--~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          291 EGNFVFHQLV-V--PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             CSSEEEEECS-S--CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEECC-C--CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence            5667677663 2  46788999999999988 432  3579999843   899999999999988753

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.79  E-value=3.7e-18  Score=158.73  Aligned_cols=174  Identities=10%  Similarity=0.060  Sum_probs=128.9

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc----CCCCcEEEeccccc-
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ----GAVPDIITVGKPMG-  163 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~----g~~pDiv~~sK~l~-  163 (284)
                      +++.+|+++..++..|. .++.+.+++|.++|++||+++|+||+|++|++.|........+    +....+.++||+++ 
T Consensus       208 ~~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~  286 (449)
T 3qgu_A          208 KRTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGF  286 (449)
T ss_dssp             CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTC
T ss_pred             CCCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCC
Confidence            45778888776777776 5588899999999999999999999999987766322222222    23345678999998 


Q ss_pred             CCcceeEEEecHHHHH--------hchh--------------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        164 NGMPIGAVITSRKIAE--------SLNC--------------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       164 ~G~p~gav~~~~~i~~--------~~~~--------------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      .|+++|++++++++++        .+..                                .++++++.+++.+.|+++  
T Consensus       287 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  366 (449)
T 3qgu_A          287 TGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGF  366 (449)
T ss_dssp             TTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            7999999999887764        1211                                224566677778888764  


Q ss_pred             ------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecCC----CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGE----YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 ------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                            .|.++++.+ + .....++++.|+++ ||++.|+..    ..+++||+  +..++++|++++++|.+++++
T Consensus       367 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~  439 (449)
T 3qgu_A          367 SVYGGDDAPYIWVGF-P-GKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAYGK  439 (449)
T ss_dssp             CEEESSSSSEEEEEC-T-TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC-
T ss_pred             eeeCCCCeeEEEEEC-C-CCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence                  356666666 3 33467888888875 999998643    24799997  667999999999999988754

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.79  E-value=1.5e-17  Score=153.11  Aligned_cols=183  Identities=11%  Similarity=0.076  Sum_probs=131.5

Q ss_pred             HHHHHHHHHhc--CCCeeEEEEc-ceecCCCcccCChhHHHHHHHHHH------HhCCEEEEecccccCccccCc--ccc
Q psy11784         77 AQAARNIMEAH--RDNIATLICE-PVFVVHGAVVPPPGWLSLMYDYIH------EIGGVVIADEIQCGMGRSGSH--FWA  145 (284)
Q Consensus        77 ~~~l~~~i~~~--~~~vaavi~E-pv~~~~G~~~~~~~~l~~l~~l~~------~~g~llI~DEv~tG~gr~G~~--~~a  145 (284)
                      .+.+++.++..  ....++++++ |.++..|.. ++.+.+++|.++|+      +||+++|+||+|++|++.|..  .+.
T Consensus       164 ~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~-~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~  242 (418)
T 3rq1_A          164 HEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYS-IEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFF  242 (418)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGG
T ss_pred             HHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHH
Confidence            67777777632  1234467776 547777764 57777999999999      899999999999999876631  123


Q ss_pred             ccccCCCCc---EE--Eeccccc-CCcceeEEEe---cHHHHHhchh------------------------h--------
Q psy11784        146 FQTQGAVPD---II--TVGKPMG-NGMPIGAVIT---SRKIAESLNC------------------------L--------  184 (284)
Q Consensus       146 ~~~~g~~pD---iv--~~sK~l~-~G~p~gav~~---~~~i~~~~~~------------------------l--------  184 (284)
                      ....++.+|   ++  ++||.++ .|+++|++++   ++++++.+..                        +        
T Consensus       243 ~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  322 (418)
T 3rq1_A          243 NKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKE  322 (418)
T ss_dssp             GGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHH
Confidence            334456677   32  7899998 6899999999   8888776532                        1        


Q ss_pred             ---------hhHHHHHHHHHHHHHhc--------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCC
Q psy11784        185 ---------DDNRPSGKYLVRPLGIN--------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAM  247 (284)
Q Consensus       185 ---------~~~~~~~~~l~~~L~~~--------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l  247 (284)
                               ++++++.+++.+.|+++        .|+++++.+    ....++++.|.++||++.|+   ++.+||+.. 
T Consensus       323 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g---~~~iRis~~-  394 (418)
T 3rq1_A          323 YEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPT----DSANAICEELKKEHIYVIAL---ANGIRIAAC-  394 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEEC----TTHHHHHHHHHHTTEECEEC---SSEEEEEGG-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCC----CCHHHHHHHHHhCCEEEecC---CCCeEEEEe-
Confidence                     12344455566666653        344444444    24567888899999999975   478999854 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q psy11784        248 CLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~~  268 (284)
                      .++++++++++++|.++++++
T Consensus       395 ~~~~~~i~~~~~~l~~~l~~~  415 (418)
T 3rq1_A          395 GIPKCQMTGLAEKIYNAMKSL  415 (418)
T ss_dssp             GSCHHHHTTHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999875

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.78  E-value=1.1e-17  Score=154.58  Aligned_cols=238  Identities=9%  Similarity=0.069  Sum_probs=156.1

Q ss_pred             CcHHHHHHHHHHHccCCc--cEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQ--NIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~--~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      ++|++.+++....+....  +|++...+||+....+......           +..+|..+   ..+.        -..+
T Consensus       115 t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~-----------~~~v~~~~---~~~~--------~d~~  172 (437)
T 3g0t_A          115 MQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQK-----------FESFDLFE---YRGE--------KLRE  172 (437)
T ss_dssp             HHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCC-----------CEEEEGGG---GCTT--------HHHH
T ss_pred             HHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCE-----------EEEEeecC---CCCc--------cCHH
Confidence            367777877765212234  7899999999876554432110           11222210   0010        1167


Q ss_pred             HHHHHHHhcCCCeeEEEE-cceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc-c-------ccccc-
Q psy11784         79 AARNIMEAHRDNIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH-F-------WAFQT-  148 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~-~-------~a~~~-  148 (284)
                      +|++.++  ..++.+|++ .| ++..|. ..+.+.+++|.++|++||+++|+||+|+++...+.. .       ..... 
T Consensus       173 ~l~~~l~--~~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (437)
T 3g0t_A          173 KLESYLQ--TGQFCSIIYSNP-NNPTWQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANY  248 (437)
T ss_dssp             HHHHHHT--TTCCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGT
T ss_pred             HHHHHHh--cCCceEEEEeCC-CCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCC
Confidence            7888874  234556655 56 666776 457888999999999999999999999976543321 1       11111 


Q ss_pred             cCCCCcEEEeccccc-CCcceeEEEecHHHHH-h-----------------chh--------------------------
Q psy11784        149 QGAVPDIITVGKPMG-NGMPIGAVITSRKIAE-S-----------------LNC--------------------------  183 (284)
Q Consensus       149 ~g~~pDiv~~sK~l~-~G~p~gav~~~~~i~~-~-----------------~~~--------------------------  183 (284)
                      .+....+.+++|.++ .|+++|++++++++++ .                 +..                          
T Consensus       249 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  328 (437)
T 3g0t_A          249 TDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACND  328 (437)
T ss_dssp             CSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHh
Confidence            222233557899999 7899999999999988 6                 543                          


Q ss_pred             --------hhhHHHHHHHHHHHHHhc----c-----------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCC--
Q psy11784        184 --------LDDNRPSGKYLVRPLGIN----L-----------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYG--  238 (284)
Q Consensus       184 --------l~~~~~~~~~l~~~L~~~----~-----------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~--  238 (284)
                              .++++++.+++.+.|+++    .           |.++++.+ + ......+++.|.++||++.++...+  
T Consensus       329 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~~~L~~~gi~v~~~~~~~~~  406 (437)
T 3g0t_A          329 GEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGY-K-GMDSSKLIEKFVRYGMCAITLKTTGSK  406 (437)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEE-T-TCCHHHHHHHHHHTTEECEESTTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEec-C-CCCHHHHHHHHHHcCeEEeeccccCCC
Confidence                    113445566677777653    1           23344444 2 2356789999999999999865322  


Q ss_pred             --CEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        239 --NVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       239 --~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                        +.+|++++.. |++++++++++|.+++++
T Consensus       407 ~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          407 RNEAMRICTSLL-PESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             CTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence              6799998844 999999999999988753

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.78  E-value=2e-18  Score=157.47  Aligned_cols=229  Identities=14%  Similarity=0.082  Sum_probs=149.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.++++.+.+....+|++...+||+....+......           +..+|....  ..+.-+        .+++
T Consensus       104 ~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~-----------~~~~~~~~~--~~~~~d--------~~~l  162 (396)
T 2q7w_A          104 TGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLE-----------VREYAYYDA--ENHTLD--------FDAL  162 (396)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCE-----------EEEEECEET--TTTEEC--------HHHH
T ss_pred             hhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCc-----------eEEEecccC--CCCCcC--------HHHH
Confidence            4789999998876656678999999999977655433211           112222100  001111        6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcccc--CccccccccCCCCc----
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG--SHFWAFQTQGAVPD----  154 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G--~~~~a~~~~g~~pD----  154 (284)
                      ++.++..+...+++++...++..|. .++.+++++|.++|++||+++|+||+|++|++.|  . ++....+...+|    
T Consensus       163 ~~~l~~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~~i~  240 (396)
T 2q7w_A          163 INSLNEAQAGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEED-AEGLRAFAAMHKELIV  240 (396)
T ss_dssp             HHHHTTCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHH-THHHHHHHHHCSCEEE
T ss_pred             HHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccch-hHHHHHHHhcCCcEEE
Confidence            8888644334566666666666665 6789999999999999999999999999987654  2 233332222233    


Q ss_pred             EEEeccccc-CCcceeEEEe---cH----HHHHhchh--------------------hh-----------------hHHH
Q psy11784        155 IITVGKPMG-NGMPIGAVIT---SR----KIAESLNC--------------------LD-----------------DNRP  189 (284)
Q Consensus       155 iv~~sK~l~-~G~p~gav~~---~~----~i~~~~~~--------------------l~-----------------~~~~  189 (284)
                      +.++||.++ .|+++|++++   ++    ++++.+..                    ++                 ++++
T Consensus       241 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~  320 (396)
T 2q7w_A          241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR  320 (396)
T ss_dssp             EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred             EEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence            447899999 7999999997   55    34443321                    11                 3345


Q ss_pred             HHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHH
Q psy11784        190 SGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFI  257 (284)
Q Consensus       190 ~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~  257 (284)
                      +.+++.+.|+++            .|++.++.+.     ...+.+.+.++||++.++      +|++++. .|+++++++
T Consensus       321 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~~------~Ris~~~-~~~e~i~~~  388 (396)
T 2q7w_A          321 MRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT-----KEQVLRLREEFGVYAVAS------GRVNVAG-MTPDNMAPL  388 (396)
T ss_dssp             HHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC-----HHHHHHHHHHHCEECCTT------CEEEGGG-CCTTTHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcceecCCCceEEEecCC-----HHHHHHHHHhcCeeecCC------ceEEEee-cCHHHHHHH
Confidence            566666666652            1334333331     234556667899999852      5998875 399999999


Q ss_pred             HHHHHHH
Q psy11784        258 VSTLNRI  264 (284)
Q Consensus       258 ~~~l~~~  264 (284)
                      +++|+++
T Consensus       389 ~~~l~~~  395 (396)
T 2q7w_A          389 CEAIVAV  395 (396)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9999875

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.78  E-value=2e-17  Score=152.05  Aligned_cols=239  Identities=13%  Similarity=0.107  Sum_probs=152.8

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++...  ....+|++...+||+....+.... ..          +..+|....  ..+..|        +++|
T Consensus       114 ~~al~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g-~~----------~~~v~~~~~--~~~~~d--------~~~l  170 (416)
T 1bw0_A          114 SHGILMAITAIC--DAGDYALVPQPGFPHYETVCKAYG-IG----------MHFYNCRPE--NDWEAD--------LDEI  170 (416)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCTHHHHHHHHTT-CE----------EEEEEEEGG--GTTEEC--------HHHH
T ss_pred             HHHHHHHHHHhC--CCCCEEEEcCCCcHhHHHHHHHcC-cE----------EEEeecCcc--cCCCCC--------HHHH
Confidence            357777777652  223679999999999765443221 11          111221100  001111        5677


Q ss_pred             HHHHHhcCCCeeE-EEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC----ccccccccCCCCc-
Q psy11784         81 RNIMEAHRDNIAT-LICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS----HFWAFQTQGAVPD-  154 (284)
Q Consensus        81 ~~~i~~~~~~vaa-vi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~----~~~a~~~~g~~pD-  154 (284)
                      ++.++   +++.+ ++++| ++..|. .+|++++++|.++|++||+++|+||+|++|.+.|.    .+.....++..++ 
T Consensus       171 ~~~l~---~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~  245 (416)
T 1bw0_A          171 RRLKD---DKTKLLIVTNP-SNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPR  245 (416)
T ss_dssp             HHHCC---TTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCE
T ss_pred             HHHhc---cCCeEEEEeCC-CCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcE
Confidence            77664   34444 45666 566676 46899999999999999999999999998866553    1222222222222 


Q ss_pred             --EEEeccccc-CCcceeEEEecHH------HHHhch-----h--------------------------hhhHHHHHHHH
Q psy11784        155 --IITVGKPMG-NGMPIGAVITSRK------IAESLN-----C--------------------------LDDNRPSGKYL  194 (284)
Q Consensus       155 --iv~~sK~l~-~G~p~gav~~~~~------i~~~~~-----~--------------------------l~~~~~~~~~l  194 (284)
                        +.++||+++ .|+++|+++++++      +...+.     .                          .++++++.+++
T Consensus       246 i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  325 (416)
T 1bw0_A          246 VILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYL  325 (416)
T ss_dssp             EEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence              347899986 5899999998763      321110     0                          12455667777


Q ss_pred             HHHHHhc---------cCceeEEEEecc----cHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHH
Q psy11784        195 VRPLGIN---------LHIFWCLILLSI----TYYLYRYTRRMK-EAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       195 ~~~L~~~---------~G~~~~i~~~~~----~~~~~~~~~~l~-~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~  258 (284)
                      .+.|+++         .|.++++.+...    ......+++.|+ ++||++.++..+  .+++|+++  ..+++++++++
T Consensus       326 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l~~~l  403 (416)
T 1bw0_A          326 YNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAV  403 (416)
T ss_dssp             HHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHH
T ss_pred             HHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHHHHHHHH
Confidence            7777654         355666666311    124667888885 889999987543  47899987  46899999999


Q ss_pred             HHHHHHHHHHh
Q psy11784        259 STLNRIFTSLQ  269 (284)
Q Consensus       259 ~~l~~~l~~~~  269 (284)
                      ++|.+++++..
T Consensus       404 ~~l~~~l~~~~  414 (416)
T 1bw0_A          404 ERIKAFCQRHA  414 (416)
T ss_dssp             HHHHHHHHHHB
T ss_pred             HHHHHHHHHhh
Confidence            99999987643

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.65  E-value=1.4e-20  Score=172.08  Aligned_cols=185  Identities=11%  Similarity=0.049  Sum_probs=127.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc---cccccc--cCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH---FWAFQT--QGA  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~---~~a~~~--~g~  151 (284)
                      .+.+++.++.  .++++|+++..++..|.. ++++++++|.++|++||+++|+||+|++|++.|..   +++...  .+.
T Consensus       153 ~~~l~~~l~~--~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~  229 (392)
T 3b1d_A          153 FEQLENDIVE--NDVKLYLLCNPHNPGGRV-WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDF  229 (392)
Confidence            5666666652  346778887667777764 67889999999999999999999999998776631   222222  445


Q ss_pred             CCcEEEeccccc-CCcceeEEEecH-HHHHhchh---------------------h-----------hhHHHHHHHHHHH
Q psy11784        152 VPDIITVGKPMG-NGMPIGAVITSR-KIAESLNC---------------------L-----------DDNRPSGKYLVRP  197 (284)
Q Consensus       152 ~pDiv~~sK~l~-~G~p~gav~~~~-~i~~~~~~---------------------l-----------~~~~~~~~~l~~~  197 (284)
                      .+++.++||+++ +|+++|++++++ ++++.+..                     +           +.++++.+++.+.
T Consensus       230 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  309 (392)
T 3b1d_A          230 ALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEY  309 (392)
Confidence            567789999998 789999999975 47765543                     1           1233444555555


Q ss_pred             HHh-c--------c-CceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        198 LGI-N--------L-HIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       198 L~~-~--------~-G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      |++ +        . +++.++++........++++.|+ ++||++.++..+    .+++|+.  +..+++++++++++|.
T Consensus       310 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~e~i~~~l~~l~  387 (392)
T 3b1d_A          310 FAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN--IAAPKSLVEEICKRIV  387 (392)
Confidence            544 2        2 22334555211124567888887 789999986433    3678986  4457899999999998


Q ss_pred             HHHH
Q psy11784        263 RIFT  266 (284)
Q Consensus       263 ~~l~  266 (284)
                      ++++
T Consensus       388 ~~l~  391 (392)
T 3b1d_A          388 CCLP  391 (392)
Confidence            8764

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.78  E-value=4.1e-18  Score=154.70  Aligned_cols=227  Identities=13%  Similarity=0.096  Sum_probs=157.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhc---CCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLD---ISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      ++|++.+++..+ .....+|++...+||+.......   ..+..          +..+|.+..  ..+..+        .
T Consensus        86 t~a~~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~--~~~~~d--------~  144 (390)
T 1elu_A           86 TTGCDIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAARFGIT----------YRFFPVAAT--LNQGDA--------A  144 (390)
T ss_dssp             HHHHHHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHHHHCCE----------EEEECCGGG--SSSSCH--------H
T ss_pred             HHHHHHHHhCCC-CCCCCEEEEecCcccHHHHHHHHHHHHhCcE----------EEEEcCCCC--CCccch--------H
Confidence            467888887765 33456899999999997643211   11111          122332210  011111        5


Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHH----HhCCEEEEecccccCccccCccccccccCCCC
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIH----EIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~----~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                      +.|++.+.   +++++|++++.++..|.+.+    +++|.++|+    +||+++|+||+|+ +|....   .  .....+
T Consensus       145 ~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~~---~--~~~~~~  211 (390)
T 1elu_A          145 AVLANHLG---PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLPL---D--FSRLEV  211 (390)
T ss_dssp             HHHHTTCC---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBCC---C--TTTSCC
T ss_pred             HHHHHhcC---CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcCC---C--hhhcCC
Confidence            66666553   46899999999999998877    999999999    9999999999997 554321   1  123457


Q ss_pred             cEEE--ecccccCCcceeEEEecHHHHHhch-------------------------h-----------------------
Q psy11784        154 DIIT--VGKPMGNGMPIGAVITSRKIAESLN-------------------------C-----------------------  183 (284)
Q Consensus       154 Div~--~sK~l~~G~p~gav~~~~~i~~~~~-------------------------~-----------------------  183 (284)
                      |+++  ++|++.+|.++|++++++++++.+.                         .                       
T Consensus       212 d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~  291 (390)
T 1elu_A          212 DYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQR  291 (390)
T ss_dssp             SEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEccccccccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHH
Confidence            8886  8998888888999999988765431                         1                       


Q ss_pred             -------hhhHHHHHHHHHHHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEc
Q psy11784        184 -------LDDNRPSGKYLVRPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLP  245 (284)
Q Consensus       184 -------l~~~~~~~~~l~~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p  245 (284)
                             .++.+++.+++.+.|+++           .|.++.+.+ +......++.+.|.++||++.++. ..+.+|+++
T Consensus       292 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gi~v~~~~-~~~~iRis~  369 (390)
T 1elu_A          292 QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTV-DSPLGHRAIVQKLEEQRIYLRTIA-DPDCIRACC  369 (390)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEE-CSSSCHHHHHHHHHHTTEECEEET-TTTEEEEEC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEc-CCCCCHHHHHHHHHHCCEEEEecC-CCCeEEEec
Confidence                   124556667777777664           255666666 222346789999999999999864 357999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy11784        246 AMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       246 ~l~~t~~~id~~~~~l~~  263 (284)
                      +...|++++++++++|++
T Consensus       370 ~~~~~~~~i~~~~~~l~~  387 (390)
T 1elu_A          370 HYITDEEEINHLLARLAD  387 (390)
T ss_dssp             CTTCCHHHHHHHHHHHTT
T ss_pred             ccCCCHHHHHHHHHHHHh
Confidence            999999999999998864

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.77  E-value=1.8e-17  Score=151.19  Aligned_cols=230  Identities=18%  Similarity=0.132  Sum_probs=158.9

Q ss_pred             CcHHHHHHHHHHH--ccCCccEEEEcCCCcccchhhhcC---CCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHH
Q psy11784          1 SEANDLALQLARA--YTGRQNIVVVDAAYHGTVNLLLDI---SPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~--~~~r~~il~~~~~yHG~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
                      |+|++.+++..++  .....+|++...+|||........   .+..          +..+|.+..    +..+       
T Consensus        95 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~----~~~d-------  153 (406)
T 1kmj_A           95 TEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAE----------LRVIPLNPD----GTLQ-------  153 (406)
T ss_dssp             HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCE----------EEEECBCTT----SCBC-------
T ss_pred             hHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCE----------EEEEecCCC----CCcC-------
Confidence            4789999998864  344578999999999976432211   1111          122332211    1111       


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         76 YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        76 ~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                       .++|++.+.   +++++|+++++++..|.+.+    +++|.++|++||+++|+||+|+. |...   +....  ..+|+
T Consensus       154 -~~~l~~~l~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~~---~~~~~--~~~d~  219 (406)
T 1kmj_A          154 -LETLPTLFD---EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHHP---VDVQA--LDCDF  219 (406)
T ss_dssp             -GGGHHHHCC---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC---CCHHH--HTCSE
T ss_pred             -HHHHHHHhc---cCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCCC---Ccccc--cCCCE
Confidence             456776664   46899999999999998877    99999999999999999999973 3321   22222  34788


Q ss_pred             E--EecccccCCcceeEEEecHHHHHhch-------------------------------h-------------------
Q psy11784        156 I--TVGKPMGNGMPIGAVITSRKIAESLN-------------------------------C-------------------  183 (284)
Q Consensus       156 v--~~sK~l~~G~p~gav~~~~~i~~~~~-------------------------------~-------------------  183 (284)
                      +  +++|.++. ..+|++++++++++.+.                               .                   
T Consensus       220 ~~~s~~K~~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~  298 (406)
T 1kmj_A          220 YVFSGHKLYGP-TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALG  298 (406)
T ss_dssp             EEEEGGGTTSC-TTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEchhccCC-CCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcC
Confidence            6  58898842 23899999998876531                               0                   


Q ss_pred             ----hhhHHHHHHHHHHHHHhc----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC----------CCC
Q psy11784        184 ----LDDNRPSGKYLVRPLGIN----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----------YGN  239 (284)
Q Consensus       184 ----l~~~~~~~~~l~~~L~~~----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~~  239 (284)
                          .++.+++.+++.+.|+++          .|.++.+.+ +. .....+.+.|.++||.+.++..          ..+
T Consensus       299 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~  376 (406)
T 1kmj_A          299 LNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNL-GK-HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPA  376 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEE-TT-CCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEE-CC-CCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCC
Confidence                113445666777777654          244555554 21 2356788899999999987642          147


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        240 VLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       240 ~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      .+|+.++..+|++|+++++++|+++++.+
T Consensus       377 ~iRis~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          377 MCRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999988764

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.77  E-value=1.3e-17  Score=153.48  Aligned_cols=231  Identities=14%  Similarity=0.104  Sum_probs=155.1

Q ss_pred             CcHHHHHHHHHHH-ccC-CccEEEEcCCCcccchhhhcC--CCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHH
Q psy11784          1 SEANDLALQLARA-YTG-RQNIVVVDAAYHGTVNLLLDI--SPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKY   76 (284)
Q Consensus         1 seA~e~AlklAr~-~~~-r~~il~~~~~yHG~t~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (284)
                      ++|++.|++..+. +++ ..+|++...+||+.......+  .+..          +..+|....    +..|        
T Consensus        95 t~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~----~~~d--------  152 (423)
T 3lvm_A           95 TESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFE----------VTYLAPQRN----GIID--------  152 (423)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCE----------EEEECCCTT----SCCC--------
T ss_pred             HHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCE----------EEEeccCCC----CccC--------
Confidence            4789999996654 443 578999999999865544322  1111          122332221    1111        


Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +++|++.++   +++++|+++++++..|...+    +++|.++|++||++||+||+|++ |..     ........+|++
T Consensus       153 ~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~-----~~~~~~~~~di~  219 (423)
T 3lvm_A          153 LKELEAAMR---DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL-----PIDLSQLKVDLM  219 (423)
T ss_dssp             HHHHHHHCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS-----CCCTTTSCCSEE
T ss_pred             HHHHHHhcC---CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC-----CcChhhcCCCEE
Confidence            577777765   46899999999999998877    99999999999999999999873 221     222233458998


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhchh--------------------------------------hhhHHHHHHHHHH
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESLNC--------------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~~~--------------------------------------l~~~~~~~~~l~~  196 (284)
                      ++|  |.+ |+.++|++++++++.+.+..                                      .++.+++.+++.+
T Consensus       220 ~~s~sK~~-g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~  298 (423)
T 3lvm_A          220 SFSGHKIY-GPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWN  298 (423)
T ss_dssp             EEESTTTT-SCSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EechHHhc-CCCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766  954 34468999988665433211                                      2255566777777


Q ss_pred             HHHhcc------------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC---------------------CCEEEE
Q psy11784        197 PLGINL------------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY---------------------GNVLLF  243 (284)
Q Consensus       197 ~L~~~~------------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---------------------~~~lr~  243 (284)
                      .|+++.            +.++.+.+.  ......+.+.|.+  +.+.++...                     .+.+|+
T Consensus       299 ~L~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi  374 (423)
T 3lvm_A          299 GIKDIEEVYLNGDLEHGAPNILNVSFN--YVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRF  374 (423)
T ss_dssp             HHTTSTTEEEESCSTTBCTTEEEEEET--TSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEE
T ss_pred             HHhcCCCEEEeCCccccCCCeEEEEeC--CCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEE
Confidence            776641            234444442  2245667777766  666653210                     378999


Q ss_pred             EcCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        244 LPAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       244 ~p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      .++..+|++++++++++|+++++++.+.
T Consensus       375 ~~~~~~t~e~i~~~~~~l~~~~~~~~~~  402 (423)
T 3lvm_A          375 SLGRFTTEEEIDYTIELVRKSIGRLRDL  402 (423)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999988653

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.77  E-value=6.9e-17  Score=147.45  Aligned_cols=220  Identities=14%  Similarity=0.117  Sum_probs=145.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcC-CCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDI-SPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      +||++.|++..  .....+|+....+||+........ ....        ..+..+|..        +         .++
T Consensus        77 t~a~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~--------d---------~~~  129 (386)
T 1cs1_A           77 MSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKRGC--------YRVLFVDQG--------D---------EQA  129 (386)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHTTTS--------CEEEEECTT--------C---------HHH
T ss_pred             HHHHHHHHHHH--hCCCCEEEEecCCcHhHHHHHHHHHHhcC--------CEEEEeCCC--------C---------HHH
Confidence            46788888866  334567899999999854322111 1000        011223321        1         678


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE--E
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII--T  157 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv--~  157 (284)
                      +++.++   +++++|+++++++..|.+.+    +++|.++|++||+++|+||+|+++... . ..   .+  .+|++  +
T Consensus       130 l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~-~-~~---~~--~~di~~~s  195 (386)
T 1cs1_A          130 LRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ-N-PL---AL--GADLVLHS  195 (386)
T ss_dssp             HHHHHH---TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC-C-GG---GG--TCSEEEEE
T ss_pred             HHHhhc---cCCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC-C-cc---cc--CceEEEEc
Confidence            888886   46889999999999998876    999999999999999999999976432 2 11   23  35655  7


Q ss_pred             ecccccCC-cce-eEEEecH-HHHHhchh---------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        158 VGKPMGNG-MPI-GAVITSR-KIAESLNC---------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       158 ~sK~l~~G-~p~-gav~~~~-~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      ++|+++++ .++ |++++++ ++++.+..                           .++..++.+++.+.|+++      
T Consensus       196 ~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~  275 (386)
T 1cs1_A          196 CTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKL  275 (386)
T ss_dssp             TTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred             CcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            89999865 565 8898876 77766543                           112333444455544432      


Q ss_pred             --------------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeec--C------------------------
Q psy11784        202 --------------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANE--G------------------------  235 (284)
Q Consensus       202 --------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~--~------------------------  235 (284)
                                          .|.++.+.+. ..  ...+.+.|.++||++...  +                        
T Consensus       276 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~  352 (386)
T 1cs1_A          276 YHPSLPENQGHEIAARQQKGFGAMLSFELD-GD--EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAA  352 (386)
T ss_dssp             ECTTSTTSTTHHHHHHHCSSCCSEEEEEES-SC--HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHH
T ss_pred             ECCCCCCCccHHHHHHhcCCCceEEEEEEC-CC--HHHHHHHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHh
Confidence                                1667777774 21  456777888899988742  1                        


Q ss_pred             --CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        236 --EYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       236 --~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                        ...+.+|+++++..++++++.+.+.|+++
T Consensus       353 ~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          353 AGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             HTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence              12479999999977777777776666543

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.77  E-value=2.4e-17  Score=152.98  Aligned_cols=190  Identities=12%  Similarity=0.107  Sum_probs=133.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc--ccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA--FQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a--~~~~g~~pD  154 (284)
                      .++|++.++...+++.+|++...++..|. +.|.+.+++|.++|++||+++|+||+|..+ ..+..+..  ....+...+
T Consensus       193 ~~~l~~~l~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~  270 (444)
T 3if2_A          193 FEALENLPALKEGRIGAICCSRPTNPTGN-VLTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTIL  270 (444)
T ss_dssp             HHHHHTCHHHHTTCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEE
T ss_pred             HHHHHHHHHhcCCCceEEEeCCCCCCCCC-cCCHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEE
Confidence            57777765433456777877655676776 557888999999999999999999999743 11110101  011233445


Q ss_pred             EEEecccccCCcceeEEEecHHHHHhchh--------------------hh--------------hHHHHHHHHHHHHHh
Q psy11784        155 IITVGKPMGNGMPIGAVITSRKIAESLNC--------------------LD--------------DNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 iv~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------l~--------------~~~~~~~~l~~~L~~  200 (284)
                      +.++||.+..|+++|++++++++++.+..                    ++              .++++.+++.+.|.+
T Consensus       271 ~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  350 (444)
T 3if2_A          271 CFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQ  350 (444)
T ss_dssp             EEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             EechhhccCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899986678999999999998877654                    10              223344455555544


Q ss_pred             c------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC------------CCEEEEEcCCCCCHHHHHH
Q psy11784        201 N------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY------------GNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       201 ~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~------------~~~lr~~p~l~~t~~~id~  256 (284)
                      .            .|+++++.+.........+++.|.++||++.++..+            .+.+||+++.  ++++|++
T Consensus       351 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~  428 (444)
T 3if2_A          351 ALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLID  428 (444)
T ss_dssp             HSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHH
T ss_pred             hcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHH
Confidence            2            356667776321335678899999999999986542            1589999886  9999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy11784        257 IVSTLNRIFTSLQM  270 (284)
Q Consensus       257 ~~~~l~~~l~~~~~  270 (284)
                      ++++|.++++++.+
T Consensus       429 ~l~~l~~~~~~~~~  442 (444)
T 3if2_A          429 GIKVIGEVVRELYD  442 (444)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999988754

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.76  E-value=1.3e-17  Score=153.21  Aligned_cols=178  Identities=10%  Similarity=-0.010  Sum_probs=125.4

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc--cccCCCCcEEEecccccCCc
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF--QTQGAVPDIITVGKPMGNGM  166 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~--~~~g~~pDiv~~sK~l~~G~  166 (284)
                      +++.+|++...++..|. .+|.+.+++|.++|++||+++|+||+|..+ ..+..+...  ...+....+.++||.+.+|+
T Consensus       179 ~~~~~v~~~~p~NptG~-~~~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~  256 (417)
T 3g7q_A          179 EETGMICVSRPTNPTGN-VITDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPGS  256 (417)
T ss_dssp             TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTTS
T ss_pred             cCceEEEECCCCCCCCC-ccCHHHHHHHHHHHHHcCCEEEEeCCCccc-cccccccccccCCCCCEEEEEechhccCCCc
Confidence            45778888766777776 457788999999999999999999999743 111101010  11122233668999666789


Q ss_pred             ceeEEEecHHHHHhchh--------------------h------h--------hHHHHHHHHHHHHHhc-----------
Q psy11784        167 PIGAVITSRKIAESLNC--------------------L------D--------DNRPSGKYLVRPLGIN-----------  201 (284)
Q Consensus       167 p~gav~~~~~i~~~~~~--------------------l------~--------~~~~~~~~l~~~L~~~-----------  201 (284)
                      ++|++++++++++.+..                    +      +        +++++.+++.+.|++.           
T Consensus       257 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  336 (417)
T 3g7q_A          257 RCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKP  336 (417)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECC
T ss_pred             ceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCC
Confidence            99999999999887654                    1      0        2234455566666542           


Q ss_pred             -cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC-----------CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        202 -LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY-----------GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       202 -~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-----------~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                       .|+++++++........++++.|.++||++.++..+           .+++||+++.  ++++|++++++|.++++++.
T Consensus       337 ~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~  414 (417)
T 3g7q_A          337 EGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAW  414 (417)
T ss_dssp             CBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHH
Confidence             356666766321335678899999999999986432           4689999875  99999999999999998765


Q ss_pred             h
Q psy11784        270 M  270 (284)
Q Consensus       270 ~  270 (284)
                      +
T Consensus       415 ~  415 (417)
T 3g7q_A          415 R  415 (417)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.76  E-value=3e-17  Score=151.34  Aligned_cols=189  Identities=13%  Similarity=0.039  Sum_probs=130.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecC-CCcccCChhHHHHHHHHH-HHhCCEEEEecccccCcccc-C-----ccccc--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVV-HGAVVPPPGWLSLMYDYI-HEIGGVVIADEIQCGMGRSG-S-----HFWAF--  146 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~-~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tG~gr~G-~-----~~~a~--  146 (284)
                      .++|++.+++ .+++++|++.|..++ .|. .++.+.+++|.++| ++||+++|+||+|+.+...+ .     .++..  
T Consensus       160 ~~~l~~~l~~-~~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  237 (423)
T 3ez1_A          160 VDAVERLAGT-DPSVKGILFVPTYSNPGGE-TISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLAR  237 (423)
T ss_dssp             HHHHHHHHHS-CTTEEEEEECSSSCTTTCC-CCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHH
T ss_pred             HHHHHHHHhh-CCCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhh
Confidence            6788888852 346889988986554 555 56788899999999 99999999999998432222 1     01111  


Q ss_pred             --cccCCCCcEEEecccccCCcceeEEEecHHHHHhchh--------------------hhh--------HHH-------
Q psy11784        147 --QTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNC--------------------LDD--------NRP-------  189 (284)
Q Consensus       147 --~~~g~~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------l~~--------~~~-------  189 (284)
                        +..+....+.++||.+.+|+++|++++++++++.+..                    ++.        +++       
T Consensus       238 ~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  317 (423)
T 3ez1_A          238 DAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAP  317 (423)
T ss_dssp             HHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence              1223334466899997779999999999998877654                    111        111       


Q ss_pred             HHHHHHHHHHh--------c------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-C-------CCCEEEEEcCC
Q psy11784        190 SGKYLVRPLGI--------N------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-E-------YGNVLLFLPAM  247 (284)
Q Consensus       190 ~~~~l~~~L~~--------~------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~-------~~~~lr~~p~l  247 (284)
                      +.+.+.+.|.+        .      .|+++++.+. .. ....+.+.|.++||++.+++ .       ..+++||+++.
T Consensus       318 ~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~-~~-~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~  395 (423)
T 3ez1_A          318 KFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTA-EP-VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTR  395 (423)
T ss_dssp             HHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEES-SS-CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSS
T ss_pred             HHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECC-CC-cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCC
Confidence            22222333322        1      3556777773 22 46678888999999999832 1       34799999876


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        248 CLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      . +++++++++++|.++++++..
T Consensus       396 ~-~~~~i~~~~~~l~~~l~~~~~  417 (423)
T 3ez1_A          396 P-PVEEVRTAMQVVAACIRLATE  417 (423)
T ss_dssp             S-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHHHHHHHH
Confidence            6 999999999999999988753

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.76  E-value=2.3e-17  Score=154.02  Aligned_cols=250  Identities=13%  Similarity=0.058  Sum_probs=151.6

Q ss_pred             CcHHHHHHHHHHHcc----C--C-ccEEEEcCCCcccchhhhcC-CCCcccccCCCCCceEEccCCCCcC--CCCCCCch
Q psy11784          1 SEANDLALQLARAYT----G--R-QNIVVVDAAYHGTVNLLLDI-SPRAFMLSSEKKPWVHVIPFPDTYR--GEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~~----~--r-~~il~~~~~yHG~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   70 (284)
                      |||++.|+++++..+    |  | ..|+..  .||+.+...... .+.....  +..    ..+.+....  ..+..|  
T Consensus        99 t~A~~~al~~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~d--  168 (467)
T 2oqx_A           99 RGAEQIYIPVLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRN--VYI----KEAFDTGVRYDFKGNFD--  168 (467)
T ss_dssp             CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEE--CBC----TTTTCTTSCCTTTTCBC--
T ss_pred             HHHHHHHHHHHhccccccCCCCccceEEec--ccccccchhhhhccCcceee--ccc----cccccCCCCCCccCCcC--
Confidence            689999999998763    6  3 446664  699875433221 1111000  000    000110000  111112  


Q ss_pred             HHHHHHHHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc----------Cccc
Q psy11784         71 QAAQKYAQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG----------MGRS  139 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----------~gr~  139 (284)
                            +++|++.++... +++++|++||+++.+|..+++.+++++|+++|++||++||+|++|..          .+..
T Consensus       169 ------~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~  242 (467)
T 2oqx_A          169 ------LEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYK  242 (467)
T ss_dssp             ------HHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGT
T ss_pred             ------HHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhccccccccc
Confidence                  678888887433 35899999999988656788999999999999999999999966542          1223


Q ss_pred             cCc--cccccccCCCCcE--EEecccccCCccee-EEEecHH----HHHhchh---------------------------
Q psy11784        140 GSH--FWAFQTQGAVPDI--ITVGKPMGNGMPIG-AVITSRK----IAESLNC---------------------------  183 (284)
Q Consensus       140 G~~--~~a~~~~g~~pDi--v~~sK~l~~G~p~g-av~~~~~----i~~~~~~---------------------------  183 (284)
                      |..  .+..+.+ ..+|+  .+++|+++  +|+| +++++++    .++.+..                           
T Consensus       243 g~~~~~~~~~~~-~~~d~~~~s~sK~~g--~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~  319 (467)
T 2oqx_A          243 DWTIEQITRETY-KYADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY  319 (467)
T ss_dssp             TSCHHHHHHHHG-GGCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH
T ss_pred             CccHHHHhhhhh-ccCCeEEEecccccC--CCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhH
Confidence            321  1110000 11444  56789885  4544 4555544    2222110                           


Q ss_pred             -------hhhHHHHHHHHHHHHHhc-------cCceeEEEEec------ccHH-HHHHHHHH-HHCCcEEeecCC-----
Q psy11784        184 -------LDDNRPSGKYLVRPLGIN-------LHIFWCLILLS------ITYY-LYRYTRRM-KEAKIIVANEGE-----  236 (284)
Q Consensus       184 -------l~~~~~~~~~l~~~L~~~-------~G~~~~i~~~~------~~~~-~~~~~~~l-~~~Gv~~~~~~~-----  236 (284)
                             +++..++++++.+.|+++       .|.++++.+..      .... ...+++.| .++||.+.+++.     
T Consensus       320 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~  399 (467)
T 2oqx_A          320 DGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGR  399 (467)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCeeecCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccc
Confidence                   112335666777777764       23344444421      0111 55678888 789999987542     


Q ss_pred             ----------CCCEEEEEcCCC-CCHHHHHHHHHHHHHHHHHHh
Q psy11784        237 ----------YGNVLLFLPAMC-LTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       237 ----------~~~~lr~~p~l~-~t~~~id~~~~~l~~~l~~~~  269 (284)
                                ..+++||.++.. +|+++|++++++|+++++++.
T Consensus       400 ~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~  443 (467)
T 2oqx_A          400 DPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             CTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred             cccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence                      127999999999 999999999999999998754

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.76  E-value=7.8e-17  Score=147.67  Aligned_cols=231  Identities=13%  Similarity=0.084  Sum_probs=159.3

Q ss_pred             CcHHHHHHHHHHH--ccCCccEEEEcCCCcccchhhhc---CCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHH
Q psy11784          1 SEANDLALQLARA--YTGRQNIVVVDAAYHGTVNLLLD---ISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~--~~~r~~il~~~~~yHG~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
                      ++|++.+++..+.  .....+|++...+||+.......   ..+..          +..+|.++.    +..+       
T Consensus       100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~----~~~d-------  158 (420)
T 1t3i_A          100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAV----------LKFVQLDEQ----ESFD-------  158 (420)
T ss_dssp             HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCE----------EEEECBCTT----SSBC-------
T ss_pred             HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcE----------EEEeccCCC----CCcC-------
Confidence            4788999988852  34456899999999996532111   11111          122333211    1111       


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         76 YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        76 ~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                       .+++++.++   +++++|++++.++..|...+    +++|.++|++||+++|+||+|+ +|...   +....+  .+|+
T Consensus       159 -~~~l~~~l~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~--~~di  224 (420)
T 1t3i_A          159 -LEHFKTLLS---EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP---LDVQLI--DCDW  224 (420)
T ss_dssp             -HHHHHHHCC---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHH--TCSE
T ss_pred             -HHHHHHhhC---CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc---Cchhhc--CCCE
Confidence             567777664   46899999999999998877    9999999999999999999997 33321   122233  3788


Q ss_pred             EEec--ccccCCcceeEEEecHHHHHhch-----------------------------h---------------------
Q psy11784        156 ITVG--KPMGNGMPIGAVITSRKIAESLN-----------------------------C---------------------  183 (284)
Q Consensus       156 v~~s--K~l~~G~p~gav~~~~~i~~~~~-----------------------------~---------------------  183 (284)
                      +++|  |.++ +.++|++++++++++.+.                             .                     
T Consensus       225 ~~~s~sK~~~-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~  303 (420)
T 1t3i_A          225 LVASGHKMCA-PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGM  303 (420)
T ss_dssp             EEEEGGGTTS-CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCH
T ss_pred             EEEehhhhcC-CCceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHH
Confidence            8766  9554 334899999998876431                             0                     


Q ss_pred             ---hhhHHHHHHHHHHHHHhc--------c------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCC---------C
Q psy11784        184 ---LDDNRPSGKYLVRPLGIN--------L------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE---------Y  237 (284)
Q Consensus       184 ---l~~~~~~~~~l~~~L~~~--------~------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------~  237 (284)
                         .++.+++.+++.+.|+++        .      |.++.+.+ +. ....++.+.|.++||.+.++..         +
T Consensus       304 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g  381 (420)
T 1t3i_A          304 ENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNV-AG-LHASDVATMVDQDGIAIRSGHHCTQPLHRLFD  381 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEE-TT-BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEE-CC-CCHHHHHHHHHHCCeEEeeccccchHHHHhcC
Confidence               113445666777777664        1      56666665 22 2356788899999999987621         1


Q ss_pred             -CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        238 -GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       238 -~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                       .+.+|+.++..+|++|+++++++|+++++.+.
T Consensus       382 ~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~  414 (420)
T 1t3i_A          382 ASGSARASLYFYNTKEEIDLFLQSLQATIRFFS  414 (420)
T ss_dssp             CCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence             57899999988999999999999999988764

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.76  E-value=3.8e-17  Score=149.68  Aligned_cols=231  Identities=10%  Similarity=0.065  Sum_probs=158.2

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchh-hhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNL-LLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +|++.+++..  .....+|++...+||+.... .....+..          +..+|.+..  +  .-|        .+++
T Consensus        73 ~al~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~--~--~~d--------~~~l  128 (416)
T 3isl_A           73 AGIEAVLASV--IEPEDDVLIPIYGRFGYLLTEIAERYGAN----------VHMLECEWG--T--VFD--------PEDI  128 (416)
T ss_dssp             HHHHHHHHHH--CCTTCEEEEEESSHHHHHHHHHHHHTTCE----------EEEEECCTT--C--CCC--------HHHH
T ss_pred             HHHHHHHHHh--cCCCCEEEEecCCcccHHHHHHHHhcCCe----------eEEEecCCC--C--CCC--------HHHH
Confidence            6777777755  44567899999999984322 11111111          222333221  1  111        6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe--
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV--  158 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~--  158 (284)
                      ++.+++  +++++|+++..++..|...+    +++|.++|++||+++|+||+|+ +|..   .+....  ..+|++++  
T Consensus       129 ~~~i~~--~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~--~~~d~~~~s~  196 (416)
T 3isl_A          129 IREIKK--VKPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAVAT-IGGC---EVKVDE--WKIDAAIGGT  196 (416)
T ss_dssp             HHHHHH--HCCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECTTT-TTTS---CCCTTT--TTCSEEECCS
T ss_pred             HHHHhh--CCCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECCcc-ccCC---Ccchhh--cCCCEEEecC
Confidence            888863  24688999999999998877    9999999999999999999997 3221   112222  34677765  


Q ss_pred             cccccCCcceeEEEecHHHHHhch---------------------------------------h----------------
Q psy11784        159 GKPMGNGMPIGAVITSRKIAESLN---------------------------------------C----------------  183 (284)
Q Consensus       159 sK~l~~G~p~gav~~~~~i~~~~~---------------------------------------~----------------  183 (284)
                      +|++.++.++|++++++++++.+.                                       .                
T Consensus       197 ~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  276 (416)
T 3isl_A          197 QKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYAL  276 (416)
T ss_dssp             SSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHH
T ss_pred             ccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHH
Confidence            499888778999999988864432                                       0                


Q ss_pred             ---------------hhhHHHHHHHHHHHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecC-
Q psy11784        184 ---------------LDDNRPSGKYLVRPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEG-  235 (284)
Q Consensus       184 ---------------l~~~~~~~~~l~~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~-  235 (284)
                                     .++.+++.+++.+.|+++           .+.++.+.+ +......++.+.|.++ ||.+.++. 
T Consensus       277 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~gi~v~~g~~  355 (416)
T 3isl_A          277 REGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEI-PGGIDGESVRDMLLAQFGIEIASSFG  355 (416)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEEC-CTTCCHHHHHHHHHHHHCEECBCCCS
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeC-CCCCCHHHHHHHHHHhCCEEEecCCC
Confidence                           224556677777777764           144555655 3333567899999887 99998753 


Q ss_pred             -CCCCEEEEEcCCCCCHHH-HHHHHHHHHHHHHHHh
Q psy11784        236 -EYGNVLLFLPAMCLTTEN-VLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       236 -~~~~~lr~~p~l~~t~~~-id~~~~~l~~~l~~~~  269 (284)
                       ..++.+|+.++...+++| +++++++|+++++++.
T Consensus       356 ~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~  391 (416)
T 3isl_A          356 PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN  391 (416)
T ss_dssp             TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence             245799999966667666 9999999999998864

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.76  E-value=4.4e-17  Score=150.58  Aligned_cols=187  Identities=13%  Similarity=0.055  Sum_probs=133.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecC-CCcccCChhHHHHHHHHH-HHhCCEEEEecccccC--ccccCc---cccc---
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVV-HGAVVPPPGWLSLMYDYI-HEIGGVVIADEIQCGM--GRSGSH---FWAF---  146 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~-~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tG~--gr~G~~---~~a~---  146 (284)
                      .++|++.++  ..++.+|++.|..++ .|. ..|.+.+++|.++| ++||+++|+||+|+++  +..+..   .+..   
T Consensus       169 ~~~l~~~l~--~~~~~~v~~~p~~~NPtG~-~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  245 (427)
T 3ppl_A          169 MDAVEELVK--NPQVKGMWVVPVFSNPTGF-TVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEA  245 (427)
T ss_dssp             HHHHHHHTT--STTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHH
T ss_pred             HHHHHHHHh--cCCCeEEEECCCCCCCCCc-cCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhc
Confidence            677777773  346889999986554 555 55778899999999 9999999999999984  333310   1111   


Q ss_pred             -cccCCCCcEEEecccccCCcceeEEEecHHHHHhchh--------------------h--------------hhHHHHH
Q psy11784        147 -QTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNC--------------------L--------------DDNRPSG  191 (284)
Q Consensus       147 -~~~g~~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------l--------------~~~~~~~  191 (284)
                       +..+....+.++||.+..|+++|++++++++++.+..                    +              +.++++.
T Consensus       246 ~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (427)
T 3ppl_A          246 AGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKF  325 (427)
T ss_dssp             TTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Confidence             1234455567999997779999999999998877644                    1              1223334


Q ss_pred             HHHHHHHHh-------c------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC--------CCCCEEEEEcCCCCC
Q psy11784        192 KYLVRPLGI-------N------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG--------EYGNVLLFLPAMCLT  250 (284)
Q Consensus       192 ~~l~~~L~~-------~------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~lr~~p~l~~t  250 (284)
                      +.+.+.|.+       .      .|+++++++. .. ....+.+.|.++||++.+++        ...+.+|++++.. +
T Consensus       326 ~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~-~~-~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~  402 (427)
T 3ppl_A          326 NKVLEILDSRLAEYGVAQWTVPAGGYFISLDVV-PG-TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-P  402 (427)
T ss_dssp             HHHHHHHHHHHGGGTCCEECCCSBSSCEEEECS-TT-CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-C
T ss_pred             HHHHHHHHHhcCCCCceEEeCCCccEEEEEECC-cc-hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-C
Confidence            444444433       1      4556677763 22 46778889999999999832        1357899988655 9


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy11784        251 TENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       251 ~~~id~~~~~l~~~l~~~~  269 (284)
                      +++|++++++|.++++++.
T Consensus       403 ~~~i~~~~~~l~~~l~~~~  421 (427)
T 3ppl_A          403 VEELEVAMDGVATCVLLAA  421 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.75  E-value=9.8e-18  Score=153.71  Aligned_cols=177  Identities=13%  Similarity=0.039  Sum_probs=124.3

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc----EEEeccccc-
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD----IITVGKPMG-  163 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD----iv~~sK~l~-  163 (284)
                      +++++|++++.++..|.+ +|.+.+++|.++|++||+++|+||+|++|++.|........++..+|    +.++||.++ 
T Consensus       162 ~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~  240 (400)
T 3asa_A          162 THIDILCLCSPNNPTGTV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGF  240 (400)
T ss_dssp             CCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTT
T ss_pred             cCccEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCC
Confidence            357788887767777765 68999999999999999999999999988765531122222222234    568999998 


Q ss_pred             CCcceeEEEecHHH-------HHhchh------------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        164 NGMPIGAVITSRKI-------AESLNC------------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       164 ~G~p~gav~~~~~i-------~~~~~~------------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      .|+++|++++++++       ++.+..                              .++++++.+++.+.|+++     
T Consensus       241 ~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  320 (400)
T 3asa_A          241 AGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLATGFEVF  320 (400)
T ss_dssp             TTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             cchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHCCCeee
Confidence            78999999998776       443211                              235667788888888764     


Q ss_pred             ---cCceeEEE-EecccHHHHHHHHHHHH-CCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        202 ---LHIFWCLI-LLSITYYLYRYTRRMKE-AKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       202 ---~G~~~~i~-~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                         .|.++++. + +......++++.|++ +||++.++..+    .+++|++  +..+++++++++++|.+++++..
T Consensus       321 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~~  394 (400)
T 3asa_A          321 GGEHAPYLWVKPT-QANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAPALQS  394 (400)
T ss_dssp             ECSSSSEEEEECC-CTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC------
T ss_pred             CCCCceEEEEecc-CCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHHHhhh
Confidence               35566777 5 322234467777775 59999986432    4689997  57899999999999999987654

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.75  E-value=3.9e-17  Score=145.95  Aligned_cols=177  Identities=12%  Similarity=0.092  Sum_probs=131.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++..  ++++|++++.++..|...+    +++|.++|++||+++|+||+| ++|...   +....+  .+|++
T Consensus       113 ~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~D~a~-~~~~~~---~~~~~~--~~d~~  180 (353)
T 2yrr_A          113 PEAVARALKRR--RYRMVALVHGETSTGVLNP----AEAIGALAKEAGALFFLDAVT-TLGMLP---FSMRAM--GVDYA  180 (353)
T ss_dssp             HHHHHHHHHHS--CCSEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTT-TTTTSC---CCHHHH--TCSEE
T ss_pred             HHHHHHHHHhC--CCCEEEEEccCCCcceecC----HHHHHHHHHHcCCeEEEEcCc-cccccc---cccccc--CceEE
Confidence            67888888742  5778999999999998876    899999999999999999999 466542   222223  36887


Q ss_pred             Ee--cccccCCcceeEEEecHHHHHhch-----------------h------------------------------hhhH
Q psy11784        157 TV--GKPMGNGMPIGAVITSRKIAESLN-----------------C------------------------------LDDN  187 (284)
Q Consensus       157 ~~--sK~l~~G~p~gav~~~~~i~~~~~-----------------~------------------------------l~~~  187 (284)
                      ++  +|+++++.++|++++++++++.+.                 .                              .++.
T Consensus       181 ~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~  260 (353)
T 2yrr_A          181 FTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRA  260 (353)
T ss_dssp             ECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             EecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            75  598887666899999999876543                 1                              1245


Q ss_pred             HHHHHHHHHHHHhc----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHH
Q psy11784        188 RPSGKYLVRPLGIN----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       188 ~~~~~~l~~~L~~~----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id  255 (284)
                      +++.+++.+.|+++          .+.++++.+ +......++.+.|.++||.+.++..  ..+.+|+.++...|++|++
T Consensus       261 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~  339 (353)
T 2yrr_A          261 REVYAWVLEELKARGFRPYPKASPLPTVLVVRP-PEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAY  339 (353)
T ss_dssp             HHHHHHHHHHHHHTTCEESCSSSBCTTEEEEEC-CTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHCCCccccCccCCCeEEEEEC-CCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHH
Confidence            56677777777764          123345555 3223467899999999999987642  3478999998888999999


Q ss_pred             -HHHHHHHHHHH
Q psy11784        256 -FIVSTLNRIFT  266 (284)
Q Consensus       256 -~~~~~l~~~l~  266 (284)
                       +++++|+++++
T Consensus       340 ~~~~~~l~~~l~  351 (353)
T 2yrr_A          340 QAFLKALDRALA  351 (353)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence             99999998875

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.75  E-value=4.8e-17  Score=149.47  Aligned_cols=233  Identities=13%  Similarity=0.105  Sum_probs=140.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCccc-chhhhc-CCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGT-VNLLLD-ISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~-t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |+|++.|++..  .....+|++...+||+. +.+... ..+....        ....+....   .+.-|        .+
T Consensus       104 s~a~~~al~~~--~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~~---~~~~d--------~~  162 (425)
T 3ecd_A          104 AQANGAVMLAL--AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFN--------ALQYGVSRD---TMLID--------YD  162 (425)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEECC------------------CE--------EEEECCCTT---TSSCC--------HH
T ss_pred             HHHHHHHHHHc--cCCCCEEEEcccccccceecchhhhhccccee--------eeecCCCcc---cCccC--------HH
Confidence            46788888766  33456788888888883 232221 1111100        111221100   01112        67


Q ss_pred             HHHHHHHhcCCCeeEEEEc-ceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcEE
Q psy11784         79 AARNIMEAHRDNIATLICE-PVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~E-pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +|++.+...  ++++|+++ |..+       +...+++|+++|++||+++|+||+|. |+.+.|. ......   .+|++
T Consensus       163 ~l~~~i~~~--~~~~v~~~~~~~~-------~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~-~~~~~~---~~di~  229 (425)
T 3ecd_A          163 QVEALAQQH--KPSLIIAGFSAYP-------RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGR-HANPVE---HAHVV  229 (425)
T ss_dssp             HHHHHHHHH--CCSEEEEECSCCC-------SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCCGGG---TCSEE
T ss_pred             HHHHHHhhc--CCcEEEEccccCC-------CcCCHHHHHHHHHHcCCEEEEECcChHhhhhccc-ccCchh---cCcEE
Confidence            888888632  36778887 5443       23448999999999999999999964 6555554 222111   16776


Q ss_pred             E--ecccccCCcceeEEEec-HHHHHhchh---------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        157 T--VGKPMGNGMPIGAVITS-RKIAESLNC---------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       157 ~--~sK~l~~G~p~gav~~~-~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +  ++|+++ |.+.|+++++ +++.+.+..                                 .++++++.+++.+.|++
T Consensus       230 ~~s~sK~l~-g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  308 (425)
T 3ecd_A          230 TSTTHKTLR-GPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA  308 (425)
T ss_dssp             EEESSGGGC-CCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCcccC-CCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            4  569995 4567999987 456554332                                 23566677778888876


Q ss_pred             c---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC--------CCCCEEEEEcCCCC----CHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG--------EYGNVLLFLPAMCL----TTENVLFIVS  259 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~lr~~p~l~~----t~~~id~~~~  259 (284)
                      .         .+.++++.+.+.......+.+.|.++||++.+..        ...+.+|+.++...    ++++++++++
T Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~  388 (425)
T 3ecd_A          309 GGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGR  388 (425)
T ss_dssp             TTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHH
T ss_pred             CCCeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHH
Confidence            4         2335555553222346678888889999998322        12358999966554    4999999999


Q ss_pred             HHHHHHHHH
Q psy11784        260 TLNRIFTSL  268 (284)
Q Consensus       260 ~l~~~l~~~  268 (284)
                      +|.+++++.
T Consensus       389 ~l~~~l~~~  397 (425)
T 3ecd_A          389 LILEVFEAL  397 (425)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999999876

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.75  E-value=1.2e-16  Score=143.43  Aligned_cols=231  Identities=15%  Similarity=0.147  Sum_probs=153.6

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchh-hhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNL-LLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      ++|++.|++..+.  ...+|+..+..||+.+.. .....+..          +..+|....    ...|        .++
T Consensus        66 t~a~~~~~~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~----~~~d--------~~~  121 (366)
T 1m32_A           66 SYAVEAVLGSALG--PQDKVLIVSNGAYGARMVEMAGLMGIA----------HHAYDCGEV----ARPD--------VQA  121 (366)
T ss_dssp             HHHHHHHHHHSCC--TTCCEEEEESSHHHHHHHHHHHHHTCC----------EEEEECCTT----SCCC--------HHH
T ss_pred             HHHHHHHHHHhcC--CCCeEEEEeCCCccHHHHHHHHHhCCc----------eEEEeCCCC----CCCC--------HHH
Confidence            4678888877642  335677788888885321 11111111          122333211    1111        678


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE--
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT--  157 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~--  157 (284)
                      |++.++.. .++.+|++....+..|.+.+    +++|.++|++||+++|+||+|+ +|...   +...  ...+|+++  
T Consensus       122 l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~---~~~~--~~~~di~~~s  190 (366)
T 1m32_A          122 IDAILNAD-PTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP---MDIA--ALHIDYLISS  190 (366)
T ss_dssp             HHHHHHHC-TTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCTT--TTTCSEEEEE
T ss_pred             HHHHHhcC-CCeEEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC---cccc--ccCccEEEec
Confidence            88888743 23566767666777788776    9999999999999999999997 44332   1222  22478874  


Q ss_pred             ecccccCCcceeEEEecHHHHHhch--------------------------h------------h-------------hh
Q psy11784        158 VGKPMGNGMPIGAVITSRKIAESLN--------------------------C------------L-------------DD  186 (284)
Q Consensus       158 ~sK~l~~G~p~gav~~~~~i~~~~~--------------------------~------------l-------------~~  186 (284)
                      ++|+++++.++|++++++++++.+.                          .            +             ++
T Consensus       191 ~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~  270 (366)
T 1m32_A          191 ANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQR  270 (366)
T ss_dssp             SSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHH
Confidence            6799987767899999998865320                          0            1             13


Q ss_pred             HHHHHHHHHHHHHhc-----------cCceeEEEEecc--cHHHHHHHHHHHHCCcEEeecCC-CCCEEEEEcCCCCCHH
Q psy11784        187 NRPSGKYLVRPLGIN-----------LHIFWCLILLSI--TYYLYRYTRRMKEAKIIVANEGE-YGNVLLFLPAMCLTTE  252 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~-----------~G~~~~i~~~~~--~~~~~~~~~~l~~~Gv~~~~~~~-~~~~lr~~p~l~~t~~  252 (284)
                      ++++.+++.+.|+++           .|.++++.+ +.  .....++.+.|.++||++.++.. ..+.+|+.++..+|++
T Consensus       271 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~  349 (366)
T 1m32_A          271 YQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYS-PEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAA  349 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEEC-CCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHH
T ss_pred             HHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEc-CccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHH
Confidence            345566677777653           134566665 32  23567899999999999987643 3579999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11784        253 NVLFIVSTLNRIFTS  267 (284)
Q Consensus       253 ~id~~~~~l~~~l~~  267 (284)
                      ++++++++|++++++
T Consensus       350 ~i~~~~~~l~~~~~~  364 (366)
T 1m32_A          350 DITALLTAIRTAMYW  364 (366)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887643

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.74  E-value=6.4e-17  Score=146.03  Aligned_cols=165  Identities=15%  Similarity=0.149  Sum_probs=122.8

Q ss_pred             eEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEeccccc-CCcceeE
Q psy11784         92 ATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG-NGMPIGA  170 (284)
Q Consensus        92 aavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~-~G~p~ga  170 (284)
                      .+++++..++..|.+.+    +++++++|+++|+++|+||+|++|+..+. ....+..+....+.+++|.++ +|+++|+
T Consensus       151 ~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~g~~G~r~G~  225 (360)
T 3hdo_A          151 KVFFLTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNA-LELVRRHENVVVTRTLSKSYSLAGMRIGL  225 (360)
T ss_dssp             SEEEEESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCC-THHHHHCSSEEEEEESTTTTSCTTSCCEE
T ss_pred             CEEEEeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcch-hHHhccCCCEEEEecchHhhcCCccceee
Confidence            36666666888888887    78899999999999999999998743332 222233444455668999997 6899999


Q ss_pred             EEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-------cCceeEEEEecccH
Q psy11784        171 VITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-------LHIFWCLILLSITY  215 (284)
Q Consensus       171 v~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-------~G~~~~i~~~~~~~  215 (284)
                      +++++++++.+..                            .++++++.+++.+.|+++       .|.++++.+.  ..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~--~~  303 (360)
T 3hdo_A          226 AIARPEVIAALDKIRDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSIGYDVIPSQGNYLFATPP--DR  303 (360)
T ss_dssp             EECCHHHHHHHHHHSCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSEEEEECT--TC
T ss_pred             EeeCHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEcCCCccEEEEECC--CC
Confidence            9999999887654                            225566677777777764       4556666552  23


Q ss_pred             HHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        216 YLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       216 ~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ...++.+.|.++||++.+++.  ..+++|++.+   +++|+|+++++|+++.+
T Consensus       304 ~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          304 DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence            467888999999999987643  3478999854   89999999999887654

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.74  E-value=7.6e-17  Score=145.57  Aligned_cols=179  Identities=15%  Similarity=0.099  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCc---cccCcccccc---ccC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG---RSGSHFWAFQ---TQG  150 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~g---r~G~~~~a~~---~~g  150 (284)
                      .+++++.+.   +++.+|+++..++..|.+. |.+.+++|.++| ++|+++|+||+|++|.   ..+.......   ..+
T Consensus       143 ~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  217 (365)
T 3get_A          143 FKKLYETHK---DEIKLIFLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFD  217 (365)
T ss_dssp             HHHHHHHTT---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCT
T ss_pred             HHHHHHHhC---CCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCC
Confidence            667777665   5688888876677777654 666777777777 6799999999999775   2221011111   223


Q ss_pred             CCCcEEEeccccc-CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        151 AVPDIITVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       151 ~~pDiv~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      ....+.+++|.++ .|+++|++++++++++.+..                            .++++++.+++.+.|++.
T Consensus       218 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  297 (365)
T 3get_A          218 NVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH  297 (365)
T ss_dssp             TEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3334458899998 78999999999999887654                            225556677777777764


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC-CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY-GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                             .|.++++.+. .. ...++.+.|.++||++.++..+ .+.+|++++   +++|++++++.|++++
T Consensus       298 g~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          298 NIKIIDSYTNFITYFFD-EK-NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             TCEECCCSSSEEEEECS-SS-CHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred             CCEECCCCCeEEEEECC-CC-CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence                   4566666663 22 5778999999999999986544 489999865   8999999999998875

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.74  E-value=1.7e-17  Score=149.72  Aligned_cols=231  Identities=13%  Similarity=0.120  Sum_probs=161.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.|++..  .....+|++.+.+||+....+... +..          +..+|.+....  +.-|        .++|
T Consensus        79 t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~-g~~----------~~~v~~~~~~~--~~~d--------~~~l  135 (371)
T 2e7j_A           79 REAKFAVMHSL--AKKDAWVVMDENCHYSSYVAAERA-GLN----------IALVPKTDYPD--YAIT--------PENF  135 (371)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHT-TCE----------EEEECCCCTTT--CCCC--------HHHH
T ss_pred             HHHHHHHHHHH--hCCCCEEEEccCcchHHHHHHHHc-CCe----------EEEeecccCCC--CCcC--------HHHH
Confidence            47888888877  334568999999999977653221 111          22233111101  1112        6778


Q ss_pred             HHHHHhcC--CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE-
Q psy11784         81 RNIMEAHR--DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT-  157 (284)
Q Consensus        81 ~~~i~~~~--~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~-  157 (284)
                      ++.+++..  +++++|++++.++..|...+    +++|.++|++||+++|+||+|+.+ ..+   +....++  +|+++ 
T Consensus       136 ~~~l~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~---~~~~~~~--~di~~~  205 (371)
T 2e7j_A          136 AQTIEETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP---VSLKEIG--ADFIVG  205 (371)
T ss_dssp             HHHHHHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC---CCHHHHT--CSEEEE
T ss_pred             HHHHHhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC---CChhhcC--CCEEEe
Confidence            88886432  45889999999999998876    799999999999999999999853 332   1222333  67764 


Q ss_pred             -ecccccCCcceeEEEecHHHHHh-ch-------------h----------------------hhhH--HHHHHHHHHHH
Q psy11784        158 -VGKPMGNGMPIGAVITSRKIAES-LN-------------C----------------------LDDN--RPSGKYLVRPL  198 (284)
Q Consensus       158 -~sK~l~~G~p~gav~~~~~i~~~-~~-------------~----------------------l~~~--~~~~~~l~~~L  198 (284)
                       ++|++++|.++|++++++++++. +.             .                      .+++  +++.+++.+.|
T Consensus       206 s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L  285 (371)
T 2e7j_A          206 SGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEM  285 (371)
T ss_dssp             EHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred             cCCcCCCCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             58999988899999999887654 21             1                      1245  67778888888


Q ss_pred             Hhc----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeec-------CCCCCEEE-EEcCCC-CCHHHHHHHHH
Q psy11784        199 GIN----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANE-------GEYGNVLL-FLPAMC-LTTENVLFIVS  259 (284)
Q Consensus       199 ~~~----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~~~lr-~~p~l~-~t~~~id~~~~  259 (284)
                      +++          .|.++++.+ +   ...++.+.|.++||.+.+.       +...+.+| +.++.. +|+++++++++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~  361 (371)
T 2e7j_A          286 EKLGIKQLGDNPHNHDLMFFHA-E---VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLN  361 (371)
T ss_dssp             HHTTCEEESSSSCCSSEEEEEC-H---HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHH
T ss_pred             HHcCcEEecCCCccCceEEEEC-C---CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHH
Confidence            764          144555555 2   4677888999999998761       11157899 998887 89999999999


Q ss_pred             HHHHHHHHH
Q psy11784        260 TLNRIFTSL  268 (284)
Q Consensus       260 ~l~~~l~~~  268 (284)
                      +|+++++++
T Consensus       362 ~l~~~~~~~  370 (371)
T 2e7j_A          362 AFKEIIEKY  370 (371)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999988653

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.73  E-value=1.2e-16  Score=146.00  Aligned_cols=180  Identities=11%  Similarity=0.094  Sum_probs=125.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-CCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-VPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~pDi  155 (284)
                      .+++++.++..  ++++|++.|.  ..|..    ..+++|.++|++||++||+||+|+ +|+++....   ..++ .+|+
T Consensus       152 ~~~l~~~i~~~--~~~~v~~~~~--~~~~~----~~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~---~~~~~~~di  219 (405)
T 2vi8_A          152 YDDVREKARLH--RPKLIVAAAA--AYPRI----IDFAKFREIADEVGAYLMVDMAHI-AGLVAAGLH---PNPVPYAHF  219 (405)
T ss_dssp             HHHHHHHHHHH--CCSEEEECCS--SCCSC----CCHHHHHHHHHHHTCEEEEECTTT-HHHHHTTSS---CCSTTTCSE
T ss_pred             HHHHHHHHHhc--CCeEEEEeCC--CCCcc----CCHHHHHHHHHHcCCEEEEEcccc-ccccccCcC---CCccccCCE
Confidence            67788888632  3567777542  22322    238999999999999999999998 555443111   1222 4788


Q ss_pred             E--EecccccCCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        156 I--TVGKPMGNGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       156 v--~~sK~l~~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +  +++|+++|+.. |++++++++++.+..                                 .++++++++++.+.|++
T Consensus       220 ~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  298 (405)
T 2vi8_A          220 VTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN  298 (405)
T ss_dssp             EEEESSSTTCCCSC-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccCCCCCC-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            7  78999986434 999999888765533                                 22556667778888876


Q ss_pred             c---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-------C-CCCEEEEEcCC----CCCHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-------E-YGNVLLFLPAM----CLTTENVLFIVS  259 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~-~~~~lr~~p~l----~~t~~~id~~~~  259 (284)
                      +         .+.++++.+.........+.+.|.++||++.++.       + ..+.+|++++.    .+++++++++++
T Consensus       299 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~  378 (405)
T 2vi8_A          299 EGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAA  378 (405)
T ss_dssp             TTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred             CCCeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHH
Confidence            4         2445566653111246678888999999998753       1 24689999987    679999999999


Q ss_pred             HHHHHHHHHh
Q psy11784        260 TLNRIFTSLQ  269 (284)
Q Consensus       260 ~l~~~l~~~~  269 (284)
                      +|+++++++.
T Consensus       379 ~l~~~~~~~~  388 (405)
T 2vi8_A          379 IIGLVLKNVG  388 (405)
T ss_dssp             HHHHHHTCTT
T ss_pred             HHHHHHhccc
Confidence            9999987664

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.73  E-value=4.8e-17  Score=145.87  Aligned_cols=231  Identities=11%  Similarity=0.054  Sum_probs=149.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchh-hhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNL-LLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      +||++.|++.++.  ...+|+..+.+||+.... .....+.          .+..+|..+     +.-|        .++
T Consensus        76 t~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~-----~~~d--------~~~  130 (359)
T 1svv_A           76 TQTNLIACSLALR--PWEAVIATQLGHISTHETGAIEATGH----------KVVTAPCPD-----GKLR--------VAD  130 (359)
T ss_dssp             HHHHHHHHHHHCC--TTEEEEEETTSHHHHSSTTHHHHTTC----------CEEEECCTT-----SCCC--------HHH
T ss_pred             hHHHHHHHHHHhC--CCCEEEEcccchHHHHHHHHHhcCCC----------eeEEEeCCC-----Ceec--------HHH
Confidence            4788888888754  345789999999986553 1111111          122334321     1112        678


Q ss_pred             HHHHHHhc----CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccC--ccccCccccccccC--C
Q psy11784         80 ARNIMEAH----RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGM--GRSGSHFWAFQTQG--A  151 (284)
Q Consensus        80 l~~~i~~~----~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~--gr~G~~~~a~~~~g--~  151 (284)
                      |++.++..    +.++++|++++. +..|.+ .|.+++++|.++|++||+++|+||+|.+|  |+.+. .  ....+  .
T Consensus       131 l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~--~~~~~~~~  205 (359)
T 1svv_A          131 IESALHENRSEHMVIPKLVYISNT-TEVGTQ-YTKQELEDISASCKEHGLYLFLDGARLASALSSPVN-D--LTLADIAR  205 (359)
T ss_dssp             HHHHHHHSCSTTSCEEEEEEEESS-CTTSCC-CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC-C--CCHHHHHH
T ss_pred             HHHHHHHHHhccCCCceEEEEEcC-CCCcee-cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc-c--hhhhhhhh
Confidence            88888743    123889988887 566664 46799999999999999999999999765  44442 1  11111  2


Q ss_pred             CCcEEEe--cccccCCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHH
Q psy11784        152 VPDIITV--GKPMGNGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       152 ~pDiv~~--sK~l~~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L  198 (284)
                      .+|++++  +|. ++.+..|++++++++++.+..                               .++++++++++.+.|
T Consensus       206 ~~d~~~~s~~K~-g~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L  284 (359)
T 1svv_A          206 LTDMFYIGATKA-GGMFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL  284 (359)
T ss_dssp             HCSEEEEECTTT-TCSSCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEecccC-CCCCceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            4788765  574 333467888888776443321                               235667777888888


Q ss_pred             Hhc--------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecC-CCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        199 GIN--------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEG-EYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       199 ~~~--------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~-~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +..        .+.++.+.+ +     .++++.|+++ ||++.+.. ...+.+|+.+++.+|++++++++++|+++++++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          285 EACGIRLAWPSASNQLFPIL-E-----NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             HHTTCCBSSCCSSSEECBEE-E-----HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             ccCCeEEccCCccceEEEEc-C-----HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence            321        122333333 1     3788899998 99985421 134689999999999999999999999887654

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.73  E-value=3.2e-16  Score=145.93  Aligned_cols=244  Identities=14%  Similarity=0.069  Sum_probs=151.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCC-----CCc-CCCCCCCchHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFP-----DTY-RGEFSADDPQAAQ   74 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~   74 (284)
                      |+|++.|++.+. -.|.   ++...+||+.+..+....+...          ..++..     +.. .+.+.-|      
T Consensus       100 t~a~~~al~~l~-~~gd---i~~~~~~~~~~~~~~~~~G~~~----------~~v~~~~~~~~~~~~~~~~~~d------  159 (456)
T 2ez2_A          100 RGAENLLSQLAI-KPGQ---YVAGNMYFTTTRYHQEKNGAVF----------VDIVRDEAHDAGLNIAFKGDID------  159 (456)
T ss_dssp             HHHHHHHHHHHC-CTTC---EEEESSCCHHHHHHHHHTTCEE----------EECBCGGGGCTTCCCSCTTCBC------
T ss_pred             HHHHHHHHHHhC-CCCC---EeccccccchhHHHHHHcCCEE----------EEecccccccccccccccCCCC------
Confidence            478888888772 2344   6778888887655443332211          112211     000 0012212      


Q ss_pred             HHHHHHHHHHHhcC-CCeeEEEEc-ceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc----------CccccCc
Q psy11784         75 KYAQAARNIMEAHR-DNIATLICE-PVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG----------MGRSGSH  142 (284)
Q Consensus        75 ~~~~~l~~~i~~~~-~~vaavi~E-pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----------~gr~G~~  142 (284)
                        .++|++.+.... ..+++|+++ |.++.+|. +.+.+++++|.++|++||+++|+||+|+.          +.+.|. 
T Consensus       160 --~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~-~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~-  235 (456)
T 2ez2_A          160 --LKKLQKLIDEKGAENIAYICLAVTVNLAGGQ-PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENK-  235 (456)
T ss_dssp             --HHHHHHHHHHHCGGGEEEEEEESSBTTTTSB-CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTS-
T ss_pred             --HHHHHHHHHhccccceeEEEEeccCCCCCCc-cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCc-
Confidence              678888887443 347899999 55557774 77899999999999999999999999984          445554 


Q ss_pred             ccc-c-cccCCCCcEEEec-ccccC-CcceeEEEe-cHHHHHhchh----------------------------------
Q psy11784        143 FWA-F-QTQGAVPDIITVG-KPMGN-GMPIGAVIT-SRKIAESLNC----------------------------------  183 (284)
Q Consensus       143 ~~a-~-~~~g~~pDiv~~s-K~l~~-G~p~gav~~-~~~i~~~~~~----------------------------------  183 (284)
                      .+. . +..+..+|++++| |.+++ | ..|++++ ++++++.+..                                  
T Consensus       236 ~~~~~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~  314 (456)
T 2ez2_A          236 SIAEIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEY  314 (456)
T ss_dssp             CHHHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHH
T ss_pred             chhhhhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhHHHH
Confidence            221 0 1223457988874 66644 3 3688877 5666543211                                  


Q ss_pred             hhhHHHHHHHHHHHHHhc--------cCceeEEEEec------ccHH-HHHHHHHH-HHCCcEEeecCC-----------
Q psy11784        184 LDDNRPSGKYLVRPLGIN--------LHIFWCLILLS------ITYY-LYRYTRRM-KEAKIIVANEGE-----------  236 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~--------~G~~~~i~~~~------~~~~-~~~~~~~l-~~~Gv~~~~~~~-----------  236 (284)
                      +++.+++.+++.+.|++.        .|.++++.+..      .... ...+++.| .++||.+.+.+.           
T Consensus       315 ~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~  394 (456)
T 2ez2_A          315 IEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGE  394 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCS
T ss_pred             HHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccc
Confidence            112333445666666652        34455555421      1112 44457777 578998755321           


Q ss_pred             ----CCCEEEEEcCCC-CCHHHHHHHHHHHHHHHHHHh
Q psy11784        237 ----YGNVLLFLPAMC-LTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       237 ----~~~~lr~~p~l~-~t~~~id~~~~~l~~~l~~~~  269 (284)
                          ..+.+||++++. +|++++++++++|++++++..
T Consensus       395 ~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~  432 (456)
T 2ez2_A          395 HHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE  432 (456)
T ss_dssp             BCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             cccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence                137899999987 899999999999999988754

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.73  E-value=1.5e-16  Score=146.80  Aligned_cols=231  Identities=16%  Similarity=0.131  Sum_probs=150.2

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.++++........+|+....+|++....+......           +..+|..+.  ..+.-|        .+.+
T Consensus       127 t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~-----------~~~v~~~~~--~~~~~d--------~~~l  185 (420)
T 4f4e_A          127 TGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFE-----------VVAYPYYDA--KTNGVN--------FDGM  185 (420)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCC-----------EEEEECEET--TTTEEC--------HHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCe-----------EEEeeeecc--ccCccC--------HHHH
Confidence            4788888887666655678999999999875544432211           112232100  001111        6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC-ccccccc-cCCCCc---E
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-HFWAFQT-QGAVPD---I  155 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~~a~~~-~g~~pD---i  155 (284)
                      ++.+++.+++..++++...++..|. .++.+.+++|.++|++||+++|+||+|.+|+..|. ....... .+..++   +
T Consensus       186 ~~~l~~~~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~  264 (420)
T 4f4e_A          186 LAALNGYEPGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVS  264 (420)
T ss_dssp             HHHHTTCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEE
T ss_pred             HHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEE
Confidence            8888755566888999888888886 45888999999999999999999999999866441 1122211 122233   3


Q ss_pred             EEeccccc-CCcceeEEEe---cHHHHHh----chh-------------------------------------hhhHHHH
Q psy11784        156 ITVGKPMG-NGMPIGAVIT---SRKIAES----LNC-------------------------------------LDDNRPS  190 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~---~~~i~~~----~~~-------------------------------------l~~~~~~  190 (284)
                      .++||.++ .|+++|++++   ++++++.    +..                                     .++++++
T Consensus       265 ~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~  344 (420)
T 4f4e_A          265 SSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAM  344 (420)
T ss_dssp             EECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999 6999999864   4554332    110                                     1134555


Q ss_pred             HHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHH
Q psy11784        191 GKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       191 ~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~  258 (284)
                      .+++.+.|+++            .|++.++.+.     ...+.+.+.++||++.+++      |++++ .++++++++++
T Consensus       345 ~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~l~~~gI~v~~~~------Ris~~-~~~~~~i~~~~  412 (420)
T 4f4e_A          345 RNGLVERLKAAGIERDFSFINAQRGMFSYSGLT-----SAQVDRLREEFGIYAVSTG------RICVA-ALNTRNLDVVA  412 (420)
T ss_dssp             HHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC-----HHHHHHHHHHHCEECCTTS------EEEGG-GCCTTTHHHHH
T ss_pred             HHHHHHHHHhcCCCCCceeECCCccEEEEeCCC-----HHHHHHHHHhCCEEecCCC------eEEEe-cCCHHHHHHHH
Confidence            66677777653            3444444331     2346666778899998632      78764 45888899999


Q ss_pred             HHHHHHH
Q psy11784        259 STLNRIF  265 (284)
Q Consensus       259 ~~l~~~l  265 (284)
                      ++|.+++
T Consensus       413 ~~l~~~l  419 (420)
T 4f4e_A          413 NAIAAVL  419 (420)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.73  E-value=2.2e-16  Score=144.83  Aligned_cols=221  Identities=12%  Similarity=0.071  Sum_probs=147.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.|++..  .....+|++...+|||...........       ....+.++|..        +         .+++
T Consensus        91 t~A~~~al~~~--~~~gd~Vi~~~~~y~~~~~~~~~~~~~-------~g~~~~~v~~~--------d---------~~~l  144 (392)
T 3qhx_A           91 MAAADCALRAM--LRPGDHVVIPDDAYGGTFRLIDKVFTG-------WNVEYTPVALA--------D---------LDAV  144 (392)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTGGG-------GTCEEEEECTT--------C---------HHHH
T ss_pred             HHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHHHHh-------cCcEEEEeCCC--------C---------HHHH
Confidence            47888888866  334567999999998865433211100       00012223321        1         6777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE--e
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT--V  158 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~--~  158 (284)
                      ++.++   +++++|++|++++..|.+.+    +++|.++|++||+++|+||+|+.+ .      .....+..+|+++  +
T Consensus       145 ~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~-~------~~~~~~~~~di~~~S~  210 (392)
T 3qhx_A          145 RAAIR---PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP-A------LQQPLSLGADVVLHST  210 (392)
T ss_dssp             HHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT-T------TCCGGGGTCSEEEEET
T ss_pred             HHhhC---CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc-c------cCChHHhCCcEEEEcC
Confidence            77765   57999999999999998877    999999999999999999999732 1      1222345688887  8


Q ss_pred             cccccC-C-cceeEEEec-HHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc-------
Q psy11784        159 GKPMGN-G-MPIGAVITS-RKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN-------  201 (284)
Q Consensus       159 sK~l~~-G-~p~gav~~~-~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~-------  201 (284)
                      +|.+++ | ++.|+++++ +++++.+..                           +++..++.+++.+.|++.       
T Consensus       211 sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~  290 (392)
T 3qhx_A          211 TKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVL  290 (392)
T ss_dssp             TTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred             ccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEE
Confidence            899997 4 688999987 577765543                           234555666777777653       


Q ss_pred             -------------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC----------------------CCCE
Q psy11784        202 -------------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----------------------YGNV  240 (284)
Q Consensus       202 -------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------------------~~~~  240 (284)
                                         .|.++++++......+..+...|...|+.+..++.                      ..+.
T Consensus       291 ~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~  370 (392)
T 3qhx_A          291 YPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDL  370 (392)
T ss_dssp             CTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTE
T ss_pred             CCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCe
Confidence                               17789999953335677788887766666543321                      2467


Q ss_pred             EEEEcCCCCCHHHHHHHHHHH
Q psy11784        241 LLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       241 lr~~p~l~~t~~~id~~~~~l  261 (284)
                      |||+.....++++|+.+.+.|
T Consensus       371 iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          371 VRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             EEEECCSSCHHHHHHHHHHHH
T ss_pred             EEEEeccCCHHHHHHHHHHHh
Confidence            888776655555555554443

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.73  E-value=2.4e-16  Score=145.64  Aligned_cols=187  Identities=11%  Similarity=0.068  Sum_probs=133.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceec-CCCcccCChhHHHHHHHHHH-HhCCEEEEecccc--cCccccCccccc------
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFV-VHGAVVPPPGWLSLMYDYIH-EIGGVVIADEIQC--GMGRSGSHFWAF------  146 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~-~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~t--G~gr~G~~~~a~------  146 (284)
                      ++++++.+.  ..++++|++.|.++ ..|. .+|.+++++|.++|+ +||+++|+||+|.  +|+..|......      
T Consensus       167 ~~~l~~~l~--~~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  243 (422)
T 3d6k_A          167 MGVVRELVK--DPQVKGMWTVPVFGNPTGV-TFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQA  243 (422)
T ss_dssp             HHHHHHHHT--STTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHH
T ss_pred             HHHHHHHHh--cCCCeEEEEcCCCCCCCCC-CCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhc
Confidence            677888775  23578888777655 4565 679999999999999 9999999999997  475544211122      


Q ss_pred             -cccCCCCcEEEecccccCCcceeEEEecHHHHHhchh--------------------hh-------hH-------HHHH
Q psy11784        147 -QTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNC--------------------LD-------DN-------RPSG  191 (284)
Q Consensus       147 -~~~g~~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------l~-------~~-------~~~~  191 (284)
                       +..+....+.+|||.++.|+++|++++++++++.+..                    ++       ++       +++.
T Consensus       244 ~~~~~~~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~  323 (422)
T 3d6k_A          244 AGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKF  323 (422)
T ss_dssp             TTCTTCEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcEEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHH
Confidence             1234455677899996678999999999998887654                    11       12       2233


Q ss_pred             HHHHHHHHh-------c------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-C-------CCEEEEEcCCCCC
Q psy11784        192 KYLVRPLGI-------N------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-Y-------GNVLLFLPAMCLT  250 (284)
Q Consensus       192 ~~l~~~L~~-------~------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~-------~~~lr~~p~l~~t  250 (284)
                      +++.+.|++       +      .|+++++.+. .. ....+.+.|.++||++.+++. +       .+++|++++. .+
T Consensus       324 ~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~-~~-~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~  400 (422)
T 3d6k_A          324 ERVLEILDSRLSEYGVAKWTSPTGGYFISVDVV-PG-TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PP  400 (422)
T ss_dssp             HHHHHHHHHHHGGGTCEEECCCSBSSCEEEEES-TT-CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SC
T ss_pred             HHHHHHHHHhcCcCCceEEeCCCcceEEEEECC-CC-CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CC
Confidence            344455543       1      4566777773 22 356678888899999998432 2       4789998877 79


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy11784        251 TENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       251 ~~~id~~~~~l~~~l~~~~  269 (284)
                      ++++++++++|.++++++.
T Consensus       401 ~e~i~~~~~~l~~~l~~~~  419 (422)
T 3d6k_A          401 VAELEVAMDGFATCVLMAA  419 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.73  E-value=5.5e-16  Score=140.99  Aligned_cols=233  Identities=10%  Similarity=0.041  Sum_probs=156.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhh-cCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLL-DISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |+|++.+++..  .....+|+..+.+||+...... ...+..          +..+|.+..  +  ..|        .++
T Consensus        69 t~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~--~--~~d--------~~~  124 (392)
T 2z9v_A           69 VLGLEAAAASL--ISPDDVVLNLASGVYGKGFGYWAKRYSPH----------LLEIEVPYN--E--AID--------PQA  124 (392)
T ss_dssp             HHHHHHHHHHH--CCTTCCEEEEESSHHHHHHHHHHHHHCSC----------EEEEECCTT--S--CCC--------HHH
T ss_pred             hHHHHHHHHHh--cCCCCEEEEecCCcccHHHHHHHHHcCCc----------eEEeeCCCC--C--CCC--------HHH
Confidence            46778888776  3344678888889988631111 101111          222333211  1  111        677


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe-
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV-  158 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~-  158 (284)
                      +++.+++ .+++++|++++.++..|...+    +++|.++|++||+++|+||+|+ +|...   +....+  .+|++++ 
T Consensus       125 l~~~l~~-~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d~~~~s  193 (392)
T 2z9v_A          125 VADMLKA-HPEITVVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGMK---THPEDC--KADIYVTG  193 (392)
T ss_dssp             HHHHHHH-CTTCCEEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTBS---CCGGGG--TCSEEEEC
T ss_pred             HHHHHhc-CCCCcEEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCcc---cccccc--cceEEEec
Confidence            8888863 235788999999999898776    8999999999999999999997 43221   222222  4788765 


Q ss_pred             -cccccCCcceeEEEecHHHHHhch---------------------h-------------------------------hh
Q psy11784        159 -GKPMGNGMPIGAVITSRKIAESLN---------------------C-------------------------------LD  185 (284)
Q Consensus       159 -sK~l~~G~p~gav~~~~~i~~~~~---------------------~-------------------------------l~  185 (284)
                       +|+++++.++|++++++++++.+.                     .                               .+
T Consensus       194 ~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  273 (392)
T 2z9v_A          194 PNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWA  273 (392)
T ss_dssp             SSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH
Confidence             699887666799999988765331                     0                               12


Q ss_pred             hHHHHHHHHHHHHHhc-----c-------CceeEEEEecccHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEEc-CCCC
Q psy11784        186 DNRPSGKYLVRPLGIN-----L-------HIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGE--YGNVLLFLP-AMCL  249 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~-----~-------G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~--~~~~lr~~p-~l~~  249 (284)
                      +.+++.+++.+.|+++     .       +.++.+.+ +......++.+.|.++ ||.+.++..  ..+.+|+.+ +..+
T Consensus       274 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~  352 (392)
T 2z9v_A          274 RHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRT-PDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTA  352 (392)
T ss_dssp             HHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEEC-CTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGC
T ss_pred             HHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEEC-CCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCccccc
Confidence            4455667777777653     1       23345554 2223467899999987 999987642  357999996 4378


Q ss_pred             CHHHHHHHHHHHHHHHHHHh
Q psy11784        250 TTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       250 t~~~id~~~~~l~~~l~~~~  269 (284)
                      |++++++++++|+++++++.
T Consensus       353 ~~~~i~~~~~~l~~~~~~~~  372 (392)
T 2z9v_A          353 QPIYAIAALTALGGAMNAAG  372 (392)
T ss_dssp             SHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999998764

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.73  E-value=1.9e-16  Score=145.34  Aligned_cols=226  Identities=12%  Similarity=0.070  Sum_probs=152.5

Q ss_pred             CcHHHHHHHHHHHc----cCCccEEEEcCCCcccchhhhc-CCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHH
Q psy11784          1 SEANDLALQLARAY----TGRQNIVVVDAAYHGTVNLLLD-ISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~~----~~r~~il~~~~~yHG~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
                      ++|++.|++.++.+    ....++|.....+|+.+..... .... ..  .+.  .+..+|.                  
T Consensus        98 t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~-~~--~g~--~~~~v~~------------------  154 (416)
T 1qz9_A           98 SINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADM-LQ--QGY--TLRLVDS------------------  154 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHH-HC--SSC--EEEEESS------------------
T ss_pred             hHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHH-hc--CCc--eEEEeCc------------------
Confidence            36778888887643    3333566677788886543321 1000 00  000  1222332                  


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         76 YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        76 ~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                       .++|++.+.   +++++|+++++++..|.+.+    +++|.++|++||+++|+||+|+ +|...   +....+  .+|+
T Consensus       155 -~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d~  220 (416)
T 1qz9_A          155 -PEELPQAID---QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP---VDLHQA--GADY  220 (416)
T ss_dssp             -GGGHHHHCS---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHH--TCSE
T ss_pred             -HHHHHHHhC---CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC---CChhhc--CCCE
Confidence             144555554   46889999999999998876    8999999999999999999997 54432   122222  3788


Q ss_pred             EEec--ccccCCcce-eEEEecHHHHHhch--------------------------h-----------------------
Q psy11784        156 ITVG--KPMGNGMPI-GAVITSRKIAESLN--------------------------C-----------------------  183 (284)
Q Consensus       156 v~~s--K~l~~G~p~-gav~~~~~i~~~~~--------------------------~-----------------------  183 (284)
                      +++|  |++++|.++ |++++++++++.+.                          .                       
T Consensus       221 ~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~  300 (416)
T 1qz9_A          221 AIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQ  300 (416)
T ss_dssp             EEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTT
T ss_pred             EEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHh
Confidence            8764  999888877 99999887643211                          0                       


Q ss_pred             ------hhhHHHHHHHHHHHHHhc-c---------------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEE
Q psy11784        184 ------LDDNRPSGKYLVRPLGIN-L---------------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVL  241 (284)
Q Consensus       184 ------l~~~~~~~~~l~~~L~~~-~---------------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~l  241 (284)
                            .++++++++++.+.|+++ .               +.++++.+ +   ....+.+.|.++||++...  ..+.+
T Consensus       301 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~---~~~~l~~~l~~~gi~~~~~--~~~~l  374 (416)
T 1qz9_A          301 TDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEH-P---EGYAVIQALIDRGVIGDYR--EPRIM  374 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEEC-T---THHHHHHHHHTTTEECEEE--TTTEE
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEec-C---CHHHHHHHHHhCCcEeccC--CCCeE
Confidence                  224566777777777652 1               23344444 2   2567899999999998653  35799


Q ss_pred             EEEcC-CCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        242 LFLPA-MCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       242 r~~p~-l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      |+.++ +.+|++|+++++++|++++++..
T Consensus       375 Ris~~~~~~t~~~i~~~~~~l~~~~~~~~  403 (416)
T 1qz9_A          375 RFGFTPLYTTFTEVWDAVQILGEILDRKT  403 (416)
T ss_dssp             EEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence            99987 68899999999999999987653

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.72  E-value=2.2e-16  Score=142.79  Aligned_cols=231  Identities=12%  Similarity=0.131  Sum_probs=154.6

Q ss_pred             CcHHHHHHHHHHHc--cCCccEEEEcCCCcccchhhhc--CCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHH
Q psy11784          1 SEANDLALQLARAY--TGRQNIVVVDAAYHGTVNLLLD--ISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKY   76 (284)
Q Consensus         1 seA~e~AlklAr~~--~~r~~il~~~~~yHG~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (284)
                      ++|++.+++..+.+  ....+|+....+||+.......  ..+..          +..+|....    +..|        
T Consensus        71 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~----~~~d--------  128 (384)
T 1eg5_A           71 TESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFK----------VKYVPVDSR----GVVK--------  128 (384)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCE----------EEECCBCTT----SCBC--------
T ss_pred             HHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCE----------EEEEccCCC----CccC--------
Confidence            47889999988742  3446799999999986554321  11111          112332211    1111        


Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhC--CEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIG--GVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .++|++.++   +++++|++++.++..|...+    +++|.++|++||  +++|+||+|+ ||...   +...  ...+|
T Consensus       129 ~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~---~~~~--~~~~d  195 (384)
T 1eg5_A          129 LEELEKLVD---EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP---FSLE--KLEVD  195 (384)
T ss_dssp             HHHHHHHCC---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC---CCCT--TTCCS
T ss_pred             HHHHHHHhC---CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc---cCch--hcCCC
Confidence            567777664   46889999999998898877    899999999999  9999999997 65432   2222  23589


Q ss_pred             EEEec--ccccC-CcceeEEEecHHH--HHhch--------h--------------------------hhhHHHHHHHHH
Q psy11784        155 IITVG--KPMGN-GMPIGAVITSRKI--AESLN--------C--------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       155 iv~~s--K~l~~-G~p~gav~~~~~i--~~~~~--------~--------------------------l~~~~~~~~~l~  195 (284)
                      ++++|  |.++. |  +|++++++++  ...+.        .                          .++++++.+++.
T Consensus       196 i~~~s~sK~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~  273 (384)
T 1eg5_A          196 YASFSAHKFHGPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLV  273 (384)
T ss_dssp             EEEEEGGGGTSCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             EEEecHHHhcCCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            98777  97653 3  7999998875  32221        0                          224556677777


Q ss_pred             HHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC---------------------CCEEEE
Q psy11784        196 RPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY---------------------GNVLLF  243 (284)
Q Consensus       196 ~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---------------------~~~lr~  243 (284)
                      +.|++.           .+.+..+.+ +. .....+.+.|.++||.+.++..+                     .+.+|+
T Consensus       274 ~~L~~~g~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi  351 (384)
T 1eg5_A          274 SGLMNLGAHIITPLEISLPNTLSVSF-PN-IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRI  351 (384)
T ss_dssp             HHHHTTTCEECSCTTSBCTTEEEEEC-TT-CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEE
T ss_pred             HHhCCCCeEEeCCcccCCCCEEEEEe-CC-CCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEE
Confidence            777753           012334443 21 24567889999999999875321                     368999


Q ss_pred             EcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        244 LPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       244 ~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      .++..+|++|+++++++|+++++++.+
T Consensus       352 ~~~~~~~~~~i~~~~~~l~~~~~~~~~  378 (384)
T 1eg5_A          352 SLCKYNTEEEVDYFLKKIEEILSFLDL  378 (384)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            988889999999999999999987743

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.72  E-value=4.3e-16  Score=141.74  Aligned_cols=233  Identities=14%  Similarity=0.068  Sum_probs=156.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchh-hhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNL-LLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |||++.|++..  .....+|++...+||+.... .....+.          .+..+|.+..    ...|        .++
T Consensus        80 t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~~----~~~d--------~~~  135 (393)
T 2huf_A           80 HGGMEATLCNL--LEDGDVILIGHTGHWGDRSADMATRYGA----------DVRVVKSKVG----QSLS--------LDE  135 (393)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEEESSHHHHHHHHHHHHTTC----------EEEEEECCTT----CCCC--------HHH
T ss_pred             HHHHHHHHHHH--hCCCCEEEEECCCcchHHHHHHHHHcCC----------eeEEEeCCCC----CCCC--------HHH
Confidence            47888888876  23346799999999984211 1111111          1222333221    1111        677


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe-
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV-  158 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~-  158 (284)
                      +++.++..  ++++|++++.++..|.+.+    +++|.++|++||+++|+||+|+ +|...   +....  ..+|++++ 
T Consensus       136 l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~~---~~~~~--~~~d~~~~s  203 (393)
T 2huf_A          136 IRDALLIH--KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGAP---MFMDR--WEIDAMYTG  203 (393)
T ss_dssp             HHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT--TTCSEEECC
T ss_pred             HHHHHhcc--CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC---cchhh--cCccEEEEC
Confidence            88888631  4678899999999998776    8999999999999999999986 54321   22222  34788865 


Q ss_pred             -cccccCCcceeEEEecHHHHHhch-------------------------------h-----------------------
Q psy11784        159 -GKPMGNGMPIGAVITSRKIAESLN-------------------------------C-----------------------  183 (284)
Q Consensus       159 -sK~l~~G~p~gav~~~~~i~~~~~-------------------------------~-----------------------  183 (284)
                       +|+++|+.++|++++++++++.+.                               .                       
T Consensus       204 ~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~  283 (393)
T 2huf_A          204 SQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPA  283 (393)
T ss_dssp             SSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             CCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence             499886555699999887765321                               0                       


Q ss_pred             -hhhHHHHHHHHHHHHHhc-------c----CceeEEEEecccHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEEc-CC
Q psy11784        184 -LDDNRPSGKYLVRPLGIN-------L----HIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGE--YGNVLLFLP-AM  247 (284)
Q Consensus       184 -l~~~~~~~~~l~~~L~~~-------~----G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~--~~~~lr~~p-~l  247 (284)
                       .++.+++.+++.+.|+++       .    +.++.+.+ +......++++.|+++ ||++.++..  ..+.+|+.+ +.
T Consensus       284 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~  362 (393)
T 2huf_A          284 LIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKV-PQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQ  362 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEEC-CTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEc-CCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccC
Confidence             124556677777777764       1    23455555 2223467888999865 999987542  357999998 66


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        248 CLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      ..+++++++++++|+++++++..
T Consensus       363 ~~~~e~i~~~~~~l~~~~~~~~~  385 (393)
T 2huf_A          363 NATTERVDRVLQVFQEAVAAVKP  385 (393)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCC
Confidence            77899999999999999987743

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.71  E-value=4.6e-16  Score=141.88  Aligned_cols=230  Identities=14%  Similarity=0.106  Sum_probs=147.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.++++........+|+....+|++....+..... .          +..+|..+.  ..+.-|        .+++
T Consensus       105 ~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-~----------~~~~~~~~~--~~~~~d--------~~~l  163 (397)
T 3fsl_A          105 SGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-E----------VSTYPWYDE--ATNGVR--------FNDL  163 (397)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTC-C----------EEEECCEET--TTTEEC--------HHHH
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCC-c----------eEEEeeeec--cCCcCc--------HHHH
Confidence            468888888776665667899999999987554443221 1          112332100  001111        6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC-ccccccc----cCCCCcE
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-HFWAFQT----QGAVPDI  155 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~~a~~~----~g~~pDi  155 (284)
                      ++.++++.++..++++...++..|. .++.+.+++|.++|++||+++|+||+|++|...+. .......    .+....+
T Consensus       164 ~~~l~~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  242 (397)
T 3fsl_A          164 LATLKTLQAGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVS  242 (397)
T ss_dssp             HHHHTTCCTTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEE
T ss_pred             HHHHHhCCCCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEE
Confidence            8888755456778888877777776 56788899999999999999999999998865421 1112211    2222234


Q ss_pred             EEeccccc-CCcceeEEEe---cHHHHHhchh-----------------------------------------hhhHHHH
Q psy11784        156 ITVGKPMG-NGMPIGAVIT---SRKIAESLNC-----------------------------------------LDDNRPS  190 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~---~~~i~~~~~~-----------------------------------------l~~~~~~  190 (284)
                      .++||.++ .|+++|++++   ++++++.+..                                         .++++++
T Consensus       243 ~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~  322 (397)
T 3fsl_A          243 NSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAM  322 (397)
T ss_dssp             EECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999 7999999974   4444432110                                         1134455


Q ss_pred             HHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHH
Q psy11784        191 GKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       191 ~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~  258 (284)
                      .+++.+.|+++            .|++.++.+.     ...+.+.+.++||++.+++      |++++ .+++++|++++
T Consensus       323 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~------Ris~~-~~~~~~i~~~~  390 (397)
T 3fsl_A          323 RQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS-----AAQVDRLREEFGVYLIASG------RMCVA-GLNTANVQRVA  390 (397)
T ss_dssp             HHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC-----HHHHHHHHHTTCEECCTTC------EEEGG-GCCTTTHHHHH
T ss_pred             HHHHHHHHHhcCCCCCceeecCCceEEEecCCC-----HHHHHHHHHhCCEEECCCC------eEEEE-ecCHhhHHHHH
Confidence            66666666653            2334443331     2346666778899998643      78764 45788899999


Q ss_pred             HHHHHH
Q psy11784        259 STLNRI  264 (284)
Q Consensus       259 ~~l~~~  264 (284)
                      ++|+++
T Consensus       391 ~~l~~~  396 (397)
T 3fsl_A          391 KAFAAV  396 (397)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            999875

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.71  E-value=1.2e-16  Score=143.36  Aligned_cols=178  Identities=13%  Similarity=0.040  Sum_probs=121.3

Q ss_pred             HHHHHH-HHHhc----CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCc--cccCcccccccc
Q psy11784         77 AQAARN-IMEAH----RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG--RSGSHFWAFQTQ  149 (284)
Q Consensus        77 ~~~l~~-~i~~~----~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~g--r~G~~~~a~~~~  149 (284)
                      .++|++ .++..    +.++++|+++|.. +.|. ++|.+++++|.++|++||+++|+||+|..+.  ..|.   .....
T Consensus       123 ~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~  197 (356)
T 1v72_A          123 IVRLRERTREKVGDVHTTQPACVSITQAT-EVGS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC---SPAEM  197 (356)
T ss_dssp             HHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC---CTTTT
T ss_pred             HHHHHHHhhhcchhhccCCceEEEEEcCC-CCCc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCC---CHHHh
Confidence            677887 77531    1258999999954 5665 5789999999999999999999999997431  1121   11111


Q ss_pred             C--CCCcEEE--ecccccCCccee--EEEecHHHHHhchh-------------------------------hhhHHHHHH
Q psy11784        150 G--AVPDIIT--VGKPMGNGMPIG--AVITSRKIAESLNC-------------------------------LDDNRPSGK  192 (284)
Q Consensus       150 g--~~pDiv~--~sK~l~~G~p~g--av~~~~~i~~~~~~-------------------------------l~~~~~~~~  192 (284)
                      +  ...|+++  ++|+   |.|+|  ++++++++++.+..                               .++.+++++
T Consensus       198 ~~~~~~d~~~~s~sK~---g~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  274 (356)
T 1v72_A          198 TWKAGVDALSFGATKN---GVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQ  274 (356)
T ss_dssp             TGGGTCCEEEECCGGG---TCSSCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred             hhhhcCCEEEEecccC---CCcCccEEEEECHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            1  1356654  5787   34777  66678877664422                               113455667


Q ss_pred             HHHHHHHhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        193 YLVRPLGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       193 ~l~~~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      ++.+.|+++         .+.++++.+ +     .++++.|.++||++.++....+.+|+.+++.+|++++++++++|++
T Consensus       275 ~l~~~L~~~~g~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  348 (356)
T 1v72_A          275 RLAQGLEGLGGVEVLGGTEANILFCRL-D-----SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRL  348 (356)
T ss_dssp             HHHHHHTTCTTEEEESCCCSSEEEEEE-C-----HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCcEEccCCCccEEEEEc-C-----HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence            777777653         222334443 1     2688889999999987542258999999999999999999999998


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      ++++.
T Consensus       349 ~l~~~  353 (356)
T 1v72_A          349 AADRT  353 (356)
T ss_dssp             TC---
T ss_pred             HHHhh
Confidence            87654

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.71  E-value=4.1e-16  Score=146.55  Aligned_cols=230  Identities=15%  Similarity=0.106  Sum_probs=153.4

Q ss_pred             CcHHHHHHHHHHHc---c----CCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHH
Q psy11784          1 SEANDLALQLARAY---T----GRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAA   73 (284)
Q Consensus         1 seA~e~AlklAr~~---~----~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (284)
                      |+|+..|++++|.+   .    +|.+||+.. .+|+.+..+....+..          +..+|....    +.-|     
T Consensus       133 t~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~-~~h~~~~~~~~~~G~~----------vv~v~~~~~----~~~d-----  192 (474)
T 1wyu_B          133 AHGELTGILIIRAYHEDRGEGRTRRVVLVPD-SAHGSNPATASMAGYQ----------VREIPSGPE----GEVD-----  192 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTTCCEEEEET-TSCTHHHHHHHHTTCE----------EEEECBCTT----SSBC-----
T ss_pred             HHHHHHHHHHHHHHHHhcCCccCCCEEEEeC-CcChhhHHHHHHCCCE----------EEEecCCCC----CCcC-----
Confidence            47889999999865   2    345677655 7888776554433221          222333211    1112     


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC
Q psy11784         74 QKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        74 ~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                         +++|++.+.   +++++|++++. +..|.+.   +.+++|.++|++||+++|+||+|..+ ..|.  .....+  .+
T Consensus       193 ---~~~L~~~i~---~~t~~v~~~~p-n~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~--~~~~~~--g~  257 (474)
T 1wyu_B          193 ---LEALKRELG---PHVAALMLTNP-NTLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMGW--ARPGDM--GF  257 (474)
T ss_dssp             ---HHHHHHHCS---TTEEEEEECSS-CTTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTTT--CCHHHH--TC
T ss_pred             ---HHHHHHhhC---CCceEEEEECC-CCCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hccC--CCcccC--CC
Confidence               677887774   46899999873 4567652   34999999999999999999999632 2332  111222  38


Q ss_pred             cEEEe--cccccC-----CcceeEEEecHHHHHhch----------------------h---------------------
Q psy11784        154 DIITV--GKPMGN-----GMPIGAVITSRKIAESLN----------------------C---------------------  183 (284)
Q Consensus       154 Div~~--sK~l~~-----G~p~gav~~~~~i~~~~~----------------------~---------------------  183 (284)
                      |++++  +|++++     |.++|++++++++++.+.                      .                     
T Consensus       258 di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~  337 (474)
T 1wyu_B          258 DVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL  337 (474)
T ss_dssp             SEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHH
Confidence            99887  798863     368999999988765442                      0                     


Q ss_pred             --------hhhHHHHHHHHHHHHHhccCc--------e--eEEEEecccHHHHHHHHHHHHCCcEEeecCC---CCCEEE
Q psy11784        184 --------LDDNRPSGKYLVRPLGINLHI--------F--WCLILLSITYYLYRYTRRMKEAKIIVANEGE---YGNVLL  242 (284)
Q Consensus       184 --------l~~~~~~~~~l~~~L~~~~G~--------~--~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~lr  242 (284)
                              .++..++++++.+.|+++ |+        +  +.+.+ +.......+++.|.++||++.....   ..+.+|
T Consensus       338 g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lR  415 (474)
T 1wyu_B          338 GLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQP-PEGFRALDLAKGLLELGFHPPTVYFPLIVKEALM  415 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBC-STTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEc-CCCCCHHHHHHHHHHCCccccccccccccCCEEE
Confidence                    124556677788888764 22        1  22222 2223567899999999998632211   247899


Q ss_pred             EEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        243 FLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       243 ~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +.++..+|++++++++++|++++++
T Consensus       416 is~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          416 VEPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             ECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             EEeecCCCHHHHHHHHHHHHHHHHh
Confidence            9999989999999999999988754

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.71  E-value=3e-16  Score=143.91  Aligned_cols=179  Identities=13%  Similarity=0.163  Sum_probs=122.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEc-ceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICE-PVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~E-pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pD  154 (284)
                      .++|++.++..  ++++|+++ |..   |...+    +++|+++|++||++||+||+|+ |+.+.|. +...  .. .+|
T Consensus       158 ~~~l~~~i~~~--~~~~v~~~~~~~---~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~-~~~~--~~-~~d  224 (420)
T 3gbx_A          158 YDEMAKLAKEH--KPKMIIGGFSAY---SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGV-YPNP--VP-HAH  224 (420)
T ss_dssp             HHHHHHHHHHH--CCSEEEECCTTC---CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTS-SCCS--TT-TSS
T ss_pred             HHHHHHHHHhc--CCeEEEEecCcc---CCccC----HHHHHHHHHHcCCEEEEECCcchhceeccc-CCcc--cc-cCC
Confidence            67888888742  36777874 544   33333    9999999999999999999985 6555554 2211  11 289


Q ss_pred             EEE--ecccccCCcceeEEEecH---HHHHhchh---------------------------------hhhHHHHHHHHHH
Q psy11784        155 IIT--VGKPMGNGMPIGAVITSR---KIAESLNC---------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       155 iv~--~sK~l~~G~p~gav~~~~---~i~~~~~~---------------------------------l~~~~~~~~~l~~  196 (284)
                      +++  ++|+++ |.+.|++++++   ++++.+..                                 .+++.++.+++.+
T Consensus       225 i~~~s~sK~~~-g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  303 (420)
T 3gbx_A          225 VVTTTTHKTLA-GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVE  303 (420)
T ss_dssp             EEEEESSGGGC-SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecccCCC-CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence            987  669997 43458888887   66654432                                 2256667777888


Q ss_pred             HHHhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEee-------cCC-CCCEEEEEcCCC----CCHHHHH
Q psy11784        197 PLGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVAN-------EGE-YGNVLLFLPAMC----LTTENVL  255 (284)
Q Consensus       197 ~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~-------~~~-~~~~lr~~p~l~----~t~~~id  255 (284)
                      .|++.         .+.++++.+.+.......+.+.|.++||++.+       +.+ ..+.+|+.++..    +++++++
T Consensus       304 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~  383 (420)
T 3gbx_A          304 VFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVK  383 (420)
T ss_dssp             HHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHH
T ss_pred             HHHhcCCeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHH
Confidence            88764         13345555532223466778888899999987       222 235699998876    5689999


Q ss_pred             HHHHHHHHHHHHHh
Q psy11784        256 FIVSTLNRIFTSLQ  269 (284)
Q Consensus       256 ~~~~~l~~~l~~~~  269 (284)
                      +++++|++++++..
T Consensus       384 ~~~~~l~~~l~~~~  397 (420)
T 3gbx_A          384 ELAGWMCDVLDNIN  397 (420)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999999987643

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.71  E-value=5.9e-16  Score=143.12  Aligned_cols=171  Identities=9%  Similarity=0.116  Sum_probs=121.4

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc----CCCCcEEEeccccc-
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ----GAVPDIITVGKPMG-  163 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~----g~~pDiv~~sK~l~-  163 (284)
                      +++.+|++...++..|. +++.+.+++|.++|++||+++|+||+|++|...+. ......+    +....+.++||+++ 
T Consensus       197 ~~~~~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~  274 (432)
T 3ei9_A          197 GRTDIIFFCSPNNPTGA-AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN-PRSIFEIPGAEEVAMETASFSNYAGF  274 (432)
T ss_dssp             CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC-CSSGGGSTTGGGTEEEEEESHHHHCT
T ss_pred             CCCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC-CCChhhcCCCCCeEEEEecchhccCC
Confidence            34667777666776776 55888999999999999999999999998754443 2222222    22233558999998 


Q ss_pred             CCcceeEEEecHHH--------HHhchh--------------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        164 NGMPIGAVITSRKI--------AESLNC--------------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       164 ~G~p~gav~~~~~i--------~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      .|+++|++++++++        .+.+..                                .++++++.+++.+.|+++  
T Consensus       275 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  354 (432)
T 3ei9_A          275 TGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGY  354 (432)
T ss_dssp             TTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence            79999999998876        444332                                124556667777777764  


Q ss_pred             ------cCceeEEEEecccHHHHHHHHHHHH-CCcEEeecCC----CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILLSITYYLYRYTRRMKE-AKIIVANEGE----YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       202 ------~G~~~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                            .|.++++.+ + .....++++.|++ +||++.++..    ..+++|++  +..++++|++++++|++.-
T Consensus       355 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~l~~~l~rl~~~~  425 (432)
T 3ei9_A          355 DVYGGKNAPYVWVHF-P-NQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRENILEACRRFKQLY  425 (432)
T ss_dssp             CEEECSSSSEEEEEC-T-TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHH
T ss_pred             eecCCCcceEEEEEC-C-CCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHh
Confidence                  344556665 2 2345677787776 4999998643    24789997  5679999999999997653

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.71  E-value=7.9e-16  Score=140.12  Aligned_cols=233  Identities=12%  Similarity=0.103  Sum_probs=156.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccch-hhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVN-LLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      +||++.+++..  .....+|+..+.+|++... ......+..          +..+|.+..    +..|        .++
T Consensus        79 t~al~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~----~~~d--------~~~  134 (396)
T 2ch1_A           79 HAGMEAMLSNL--LEEGDRVLIAVNGIWAERAVEMSERYGAD----------VRTIEGPPD----RPFS--------LET  134 (396)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEEESSHHHHHHHHHHHHTTCE----------EEEEECCTT----SCCC--------HHH
T ss_pred             HHHHHHHHHHh--cCCCCeEEEEcCCcccHHHHHHHHHcCCc----------eEEecCCCC----CCCC--------HHH
Confidence            46777777766  2334678999999998531 111111111          222333221    1112        677


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      +++.++..  ++++|++++..+..|.+.+    +++|.++|++||+++|+||+|+ +|...   +...  ...+|+++.|
T Consensus       135 l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~Dea~~-~g~~~---~~~~--~~~~d~~~~s  202 (396)
T 2ch1_A          135 LARAIELH--QPKCLFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGVP---FYMD--KWEIDAVYTG  202 (396)
T ss_dssp             HHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTT--TTTCCEEECC
T ss_pred             HHHHHHhC--CCCEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEEcccc-ccCCc---cchh--hcCcCEEEEc
Confidence            88888632  4678899988888898776    8999999999999999999997 55321   2222  2347888766


Q ss_pred             --ccccCCcceeEEEecHHHHHhch--------------------------h----------------------------
Q psy11784        160 --KPMGNGMPIGAVITSRKIAESLN--------------------------C----------------------------  183 (284)
Q Consensus       160 --K~l~~G~p~gav~~~~~i~~~~~--------------------------~----------------------------  183 (284)
                        |.++++.++|++++++++++.+.                          .                            
T Consensus       203 ~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~  282 (396)
T 2ch1_A          203 AQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLEN  282 (396)
T ss_dssp             CC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             CCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHH
Confidence              99987767799999887765420                          0                            


Q ss_pred             -hhhHHHHHHHHHHHHHhc-------cC-----ceeEEEEecccHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEEc-C
Q psy11784        184 -LDDNRPSGKYLVRPLGIN-------LH-----IFWCLILLSITYYLYRYTRRMKEA-KIIVANEGE--YGNVLLFLP-A  246 (284)
Q Consensus       184 -l~~~~~~~~~l~~~L~~~-------~G-----~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~--~~~~lr~~p-~  246 (284)
                       .++.+++.+++.+.|+++       .+     .++.+.+ +......++.+.|+++ ||.+.++..  ..+.+|+.+ +
T Consensus       283 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~  361 (396)
T 2ch1_A          283 QIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMI-PKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMG  361 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEEC-CTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEc-CCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCC
Confidence             224556677777777764       11     2445554 3233467899999875 999987532  357899998 6


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        247 MCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       247 l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      ++++++++++++++|+++++++..
T Consensus       362 ~~~~~e~i~~~~~~l~~~l~~~~~  385 (396)
T 2ch1_A          362 ECSTVQKIQFYLYGFKESLKATHP  385 (396)
T ss_dssp             GGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CcCCHHHHHHHHHHHHHHHHHhCc
Confidence            788999999999999999988753

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.71  E-value=5.1e-16  Score=142.34  Aligned_cols=220  Identities=13%  Similarity=0.065  Sum_probs=145.9

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhh---cCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLL---DISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      +|++.|++...  ....+|++...+||+......   ...+.          .+..+|..        +         .+
T Consensus        90 ~a~~~~l~~~~--~~gd~vi~~~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~--------d---------~~  140 (398)
T 2rfv_A           90 SAITTTLLTLC--QQGDHIVSASAIYGCTHAFLSHSMPKFGI----------NVRFVDAA--------K---------PE  140 (398)
T ss_dssp             HHHHHHHHHHC--CTTCEEEEESSSCHHHHHHHHTHHHHTTC----------EEEEECTT--------S---------HH
T ss_pred             HHHHHHHHHHh--CCCCEEEEcCCCcccHHHHHHHHHHHcCC----------EEEEeCCC--------C---------HH
Confidence            67777777652  234678888888888654431   11111          01223321        1         57


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE--E
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI--I  156 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi--v  156 (284)
                      ++++.++   +++++|++|+.++..|.+.+    +++|.++|++||+++|+||+|+.+ ..+. ..   .++  +|+  .
T Consensus       141 ~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~-~~~~-~~---~~~--~di~~~  206 (398)
T 2rfv_A          141 EIRAAMR---PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP-YCQQ-PL---QLG--ADIVVH  206 (398)
T ss_dssp             HHHHHCC---TTEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT-TTCC-GG---GGT--CSEEEE
T ss_pred             HHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-ch---hhC--CcEEEE
Confidence            7777664   46899999999999998876    999999999999999999999733 2232 22   233  565  5


Q ss_pred             EecccccC-Ccce-eEEEecHHHHH-hchh----------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        157 TVGKPMGN-GMPI-GAVITSRKIAE-SLNC----------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       157 ~~sK~l~~-G~p~-gav~~~~~i~~-~~~~----------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                      +++|.+++ |.|+ |++++++++++ .+..                            +++..++.+++.+.|++.    
T Consensus       207 s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~  286 (398)
T 2rfv_A          207 SVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSIT  286 (398)
T ss_dssp             ETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             eCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence            78999976 6888 99999988765 3221                            123344555556666541    


Q ss_pred             ----------------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----------------------
Q psy11784        202 ----------------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----------------------  236 (284)
Q Consensus       202 ----------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----------------------  236 (284)
                                            .|.++++++.........+.+.+...|+.+.+++.                       
T Consensus       287 ~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~  366 (398)
T 2rfv_A          287 RVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKA  366 (398)
T ss_dssp             EEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHT
T ss_pred             EEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhc
Confidence                                  26778887742223445565555555776655421                       


Q ss_pred             --CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        237 --YGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       237 --~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                        ..+.+|++++...++++++.+++.|+++
T Consensus       367 g~~~~~iRls~~~~~~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          367 GITDGLIRLSVGLEDPEDIINDLEHAIRKA  396 (398)
T ss_dssp             TCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence              1479999999999999999988888653

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.70  E-value=9.3e-16  Score=139.81  Aligned_cols=183  Identities=16%  Similarity=0.154  Sum_probs=121.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE-
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI-  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi-  155 (284)
                      .+++++.+.   +++.+|++...++..|. ..|++.+++|.++|++||+++|+||+|..+...|. ......+.-..++ 
T Consensus       154 ~~~l~~~l~---~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~i~  228 (385)
T 1b5p_A          154 PERVRRAIT---PRTKALVVNSPNNPTGA-VYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE-HFSPGRVAPEHTLT  228 (385)
T ss_dssp             HHHHHTTCC---TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGGGTCTTTEEE
T ss_pred             HHHHHHhcC---CCCEEEEEeCCCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCCHHHcCCCCEEE
Confidence            566666554   34666665433555565 45889999999999999999999999997744332 2222222112233 


Q ss_pred             -EEeccccc-CCcceeEEEecHHHHHhchh--------------------hh--------------hHHHHHHHHHHHHH
Q psy11784        156 -ITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------LD--------------DNRPSGKYLVRPLG  199 (284)
Q Consensus       156 -v~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------l~--------------~~~~~~~~l~~~L~  199 (284)
                       .++||.++ .|+++|++++++++++.+..                    ++              +++++.+++.+.|+
T Consensus       229 ~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  308 (385)
T 1b5p_A          229 VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLT  308 (385)
T ss_dssp             EEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEechhhcCCcccceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence             37899998 68999999999988776543                    21              22233445555555


Q ss_pred             hc--------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        200 IN--------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       200 ~~--------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ++        .|++.++.+........++++.|.++||.+.++..+  .+.+|++..  .+++++++++++|.++++
T Consensus       309 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          309 ALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLG  383 (385)
T ss_dssp             HHTCCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred             HCCCeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            43        223444444211224677889999999999986543  378999754  799999999999877654

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.70  E-value=3.3e-16  Score=143.85  Aligned_cols=232  Identities=12%  Similarity=0.088  Sum_probs=146.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.++++++.+....+|+....+||+....+.... ..          +..+|..+.  ..+..|        .+++
T Consensus       108 ~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g-~~----------~~~v~~~~~--~~~~~d--------~~~l  166 (412)
T 1yaa_A          108 TGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQG-LK----------TATYPYWAN--ETKSLD--------LNGF  166 (412)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTT-CC----------EEEEECEET--TTTEEC--------HHHH
T ss_pred             HhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcC-ce----------EEEEeeecC--CCCccC--------HHHH
Confidence            36888888887776555789999999999765443321 11          112232000  001111        6778


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcccc---Cccccccc-cCCCC---
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG---SHFWAFQT-QGAVP---  153 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G---~~~~a~~~-~g~~p---  153 (284)
                      ++.++..+...+.+++...++..|. .++.+.+++|.++|++||+++|+||+|.+|++.|   . ...... ....+   
T Consensus       167 ~~~l~~~~~~~~~~~~~~p~nPtG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  244 (412)
T 1yaa_A          167 LNAIQKAPEGSIFVLHSCAHNPTGL-DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKD-AYAVRLGVEKLSTVS  244 (412)
T ss_dssp             HHHHHHSCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHH-THHHHHHHHHTTTTC
T ss_pred             HHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccch-hHHHHHHHhcCCCCc
Confidence            8888744323444554555666665 5688999999999999999999999999886544   2 222211 11223   


Q ss_pred             -c--EEEecccccC-CcceeEEE--e-----cHH----HHHhchh--------------------hh-------------
Q psy11784        154 -D--IITVGKPMGN-GMPIGAVI--T-----SRK----IAESLNC--------------------LD-------------  185 (284)
Q Consensus       154 -D--iv~~sK~l~~-G~p~gav~--~-----~~~----i~~~~~~--------------------l~-------------  185 (284)
                       +  +.++||.++. |+++|+++  +     +++    +++.+..                    ++             
T Consensus       245 ~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  324 (412)
T 1yaa_A          245 PVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMV  324 (412)
T ss_dssp             CEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             ceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             2  3478999997 99999998  7     565    6554432                    11             


Q ss_pred             ----hHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCC
Q psy11784        186 ----DNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCL  249 (284)
Q Consensus       186 ----~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~  249 (284)
                          +++++.+++.+.|+++            .|++.++.+     ....+.+.+.++||++.+      .+|++++. +
T Consensus       325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~------~~Ris~~~-~  392 (412)
T 1yaa_A          325 TMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL-----TPQMVKRLEETHAVYLVA------SGRASIAG-L  392 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC-----CHHHHHHHHHHHCEECCT------TSEEEGGG-C
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC-----CHHHHHHHHHhCCEEecc------CcEEEEcc-C
Confidence                2334455666666542            123322222     123454445578999985      46998774 5


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q psy11784        250 TTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       250 t~~~id~~~~~l~~~l~~  267 (284)
                      +++++++++++|+++++.
T Consensus       393 ~~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          393 NQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             CTTTHHHHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHHHh
Confidence            999999999999998864

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.70  E-value=2.2e-16  Score=147.65  Aligned_cols=235  Identities=12%  Similarity=0.054  Sum_probs=157.7

Q ss_pred             cHHHHHHHHHHHc-cCCccEEEEcCCCcccchhhhcC---CCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          2 EANDLALQLARAY-TGRQNIVVVDAAYHGTVNLLLDI---SPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         2 eA~e~AlklAr~~-~~r~~il~~~~~yHG~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      +++..+++..... ..+.+||+...+||+......+.   .+.....     ..+...|.++.+    .-+        .
T Consensus       139 ~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~-----~~v~~~~~~~~~----~~d--------~  201 (465)
T 3e9k_A          139 VNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE-----SMRMIKPREGEE----TLR--------I  201 (465)
T ss_dssp             HHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH-----HEEEECCCTTCS----SCC--------H
T ss_pred             HHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCccee-----eeEEEecCCCCC----ccC--------H
Confidence            4566666554322 24667999999999976543321   1111000     001122322211    111        6


Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT  157 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~  157 (284)
                      +++++.++++.+++++|+++.+++..|.+.+    +++|.++|++||+++|+|++|+ +|...   ......  ..|+++
T Consensus       202 ~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~~---~~~~~~--~~D~~~  271 (465)
T 3e9k_A          202 EDILEVIEKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNVE---LYLHDW--GVDFAC  271 (465)
T ss_dssp             HHHHHHHHHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHH--TCCEEE
T ss_pred             HHHHHHHHhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCcC---Cchhhc--CCCEEE
Confidence            7888888755457999999999999999887    8999999999999999999997 32221   222222  367765


Q ss_pred             --ecccccCC-cceeEEEecHHHHHhchh---------------------------------------------------
Q psy11784        158 --VGKPMGNG-MPIGAVITSRKIAESLNC---------------------------------------------------  183 (284)
Q Consensus       158 --~sK~l~~G-~p~gav~~~~~i~~~~~~---------------------------------------------------  183 (284)
                        ++|.+++| .++|++++++++.+.+..                                                   
T Consensus       272 ~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~  351 (465)
T 3e9k_A          272 WCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQ  351 (465)
T ss_dssp             ECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             ECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHH
Confidence              55999655 468899988877432210                                                   


Q ss_pred             ------hhhHHHHHHHHHHHHHh-----------c------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeec
Q psy11784        184 ------LDDNRPSGKYLVRPLGI-----------N------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANE  234 (284)
Q Consensus       184 ------l~~~~~~~~~l~~~L~~-----------~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~  234 (284)
                            .++..++.+++.+.|++           .            .|.++++.+.   .....+.+.|.++||++...
T Consensus       352 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~---~~~~~l~~~L~~~Gi~v~~~  428 (465)
T 3e9k_A          352 ATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS---VPNKDVFQELEKRGVVCDKR  428 (465)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC---CTTCCHHHHHHTTTEECEEE
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec---CCHHHHHHHHHHCCEEEecC
Confidence                  23556667778777765           2            2666777663   23457889999999999753


Q ss_pred             CCCCCEEEEEc-CCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        235 GEYGNVLLFLP-AMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       235 ~~~~~~lr~~p-~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      .  .+++|++| |+.+|++|++++++.|++++++.
T Consensus       429 ~--~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          429 N--PNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA  461 (465)
T ss_dssp             T--TTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             C--CCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence            2  58999999 89999999999999999988653

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.69  E-value=2.4e-15  Score=142.01  Aligned_cols=186  Identities=17%  Similarity=0.072  Sum_probs=131.0

Q ss_pred             HHHHHHHHHhc-CCC--eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEAH-RDN--IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~-~~~--vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .++|++.++.. ..+  +.+|++.......|.+.+    +++|.++|++||+++++|++|+|+.....  +.....++ .
T Consensus       242 ~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~--~~~~~~gi~~  315 (497)
T 2qma_A          242 ITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS--HKSRLKGVER  315 (497)
T ss_dssp             GGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST--TGGGGTTGGG
T ss_pred             HHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc--chHhhcCccc
Confidence            46677777632 122  457777766777787666    99999999999999999999998755443  33334566 7


Q ss_pred             CcEEEe--cccccCCcceeEEEecHHH-HHhch----------------------------h------------------
Q psy11784        153 PDIITV--GKPMGNGMPIGAVITSRKI-AESLN----------------------------C------------------  183 (284)
Q Consensus       153 pDiv~~--sK~l~~G~p~gav~~~~~i-~~~~~----------------------------~------------------  183 (284)
                      +|++++  +|++++++++|+++++++. ++.+.                            .                  
T Consensus       316 ~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~  395 (497)
T 2qma_A          316 AHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDM  395 (497)
T ss_dssp             CSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHH
T ss_pred             CCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHH
Confidence            899877  8999888889999886432 22110                            0                  


Q ss_pred             hhhHHHHHHHHHHHHHhc---------cCceeEEEEeccc----HHHHHHHHHHHHCCcEEeecCC--CCCEEEEEc-CC
Q psy11784        184 LDDNRPSGKYLVRPLGIN---------LHIFWCLILLSIT----YYLYRYTRRMKEAKIIVANEGE--YGNVLLFLP-AM  247 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~---------~G~~~~i~~~~~~----~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p-~l  247 (284)
                      +++..++++++.+.|+++         .+.++.+.+.+..    .....+.+.|.++|+++.+...  ..+++|+++ +.
T Consensus       396 ~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~  475 (497)
T 2qma_A          396 YDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNP  475 (497)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCT
T ss_pred             HHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCC
Confidence            335667788888888774         2335555554321    2245677889999998865322  235899987 88


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q psy11784        248 CLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~~  268 (284)
                      .+|++|+++++++|+++++++
T Consensus       476 ~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          476 CLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHhh
Confidence            899999999999999988764

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.69  E-value=8.8e-16  Score=137.36  Aligned_cols=227  Identities=13%  Similarity=0.039  Sum_probs=151.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhh-cCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLL-DISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      ++|++.+++...  ....+|++...+||+...... ...+..          +..+|.+..  +..  |        .++
T Consensus        61 t~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~--~~~--d--------~~~  116 (352)
T 1iug_A           61 TLAMEALVKNLF--APGERVLVPVYGKFSERFYEIALEAGLV----------VERLDYPYG--DTP--R--------PED  116 (352)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEECSHHHHHHHHHHHHTTCE----------EEEEECCTT--CCC--C--------TTT
T ss_pred             HHHHHHHHHhcc--CCCCeEEEEeCCchhHHHHHHHHHcCCc----------eEEEeCCCC--CCC--C--------HHH
Confidence            367777877662  234578888888888651111 111111          122333221  111  1        223


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh--CCEEEEecccccCccccCccccccccCCCCcEEE
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI--GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT  157 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~  157 (284)
                      +++      +++++|+++..++..|.+.+    +++|.++|++|  |+++|+||+|+ +|...   +....+  .+|+++
T Consensus       117 l~~------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~~d~~~  180 (352)
T 1iug_A          117 VAK------EGYAGLLLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVGE---VALEAM--GVDAAA  180 (352)
T ss_dssp             SCC------SSCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTBC---CCSGGG--TCSEEE
T ss_pred             Hhc------cCCcEEEEEEecCCcceecC----HHHHHHHHHhhCCCCEEEEECCcc-ccCcc---eecccc--CeeEEE
Confidence            322      35778999999999998876    89999999999  99999999996 54321   222222  367775


Q ss_pred             e--cccccCCcceeEEEecHHHHHh---------ch--------h----------------------------hhhHHHH
Q psy11784        158 V--GKPMGNGMPIGAVITSRKIAES---------LN--------C----------------------------LDDNRPS  190 (284)
Q Consensus       158 ~--sK~l~~G~p~gav~~~~~i~~~---------~~--------~----------------------------l~~~~~~  190 (284)
                      +  +|++.++.++|++++++++++.         +.        .                            .++++++
T Consensus       181 ~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~  260 (352)
T 1iug_A          181 SGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQ  260 (352)
T ss_dssp             EESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHH
T ss_pred             ecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  6988876678999999887643         11        0                            1245566


Q ss_pred             HHHHHHHHHhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHHHHHH
Q psy11784        191 GKYLVRPLGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVLFIVS  259 (284)
Q Consensus       191 ~~~l~~~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~~~  259 (284)
                      .+++.+.|+++         .+.++++.+ +......++.+.|.++||.+.++..  ..+.+|+.++...|+++++++++
T Consensus       261 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~  339 (352)
T 1iug_A          261 NALLYGVGEEGGLRPVPKRFSPAVAAFYL-PEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAG  339 (352)
T ss_dssp             HHHHHHHHHHTTCEESCSSBCTTCEEEEC-CTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCcccccccCCeEEEEEc-CCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHH
Confidence            77777777764         134556655 2223467899999999999987642  35799999998889999999999


Q ss_pred             HHHHHHHHH
Q psy11784        260 TLNRIFTSL  268 (284)
Q Consensus       260 ~l~~~l~~~  268 (284)
                      +|+++++++
T Consensus       340 ~l~~~~~~~  348 (352)
T 1iug_A          340 MFREVLEEI  348 (352)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.68  E-value=2.9e-15  Score=137.34  Aligned_cols=233  Identities=14%  Similarity=0.155  Sum_probs=136.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccch--hhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVN--LLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |+|++.|++..  .....+|++...+||+...  ......+..          ....+.+..  ..+..|        .+
T Consensus        97 t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~--~~~~~d--------~~  154 (417)
T 3n0l_A           97 SQANQGVYAAL--INPGDKILGMDLSHGGHLTHGAKVSSSGKM----------YESCFYGVE--LDGRID--------YE  154 (417)
T ss_dssp             HHHHHHHHHHH--SCTTCEEEEECC----------------CC----------SEEEEECCC--TTSSCC--------HH
T ss_pred             HHHHHHHHHHh--cCCCCEEEecccccccccchhhhhhhhcce----------eeeEeccCC--CCCCcC--------HH
Confidence            46777787766  2234578888888876432  111111110          001121111  111112        67


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcEEE
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDIIT  157 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDiv~  157 (284)
                      +|++.+++.  ++++|++.+  +++|...+    +++|.++|++||+++|+||+|+ |+...|. ...  ... ..|+++
T Consensus       155 ~l~~~i~~~--~~~~v~~~~--~~~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~--~~~-~~di~~  222 (417)
T 3n0l_A          155 KVREIAKKE--KPKLIVCGA--SAYARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGE-HPS--PFP-YAHVVS  222 (417)
T ss_dssp             HHHHHHHHH--CCSEEEECC--SSCCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCC--CTT-TCSEEE
T ss_pred             HHHHHHHhc--CCeEEEECC--cccCccCC----HHHHHHHHHHcCCEEEEECccchhhhhccc-CCC--ccc-cceEEE
Confidence            888888632  355666433  33476555    9999999999999999999975 4322222 100  011 358887


Q ss_pred             ec--ccccCCcceeEEEec-HHHHHhchh---------------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        158 VG--KPMGNGMPIGAVITS-RKIAESLNC---------------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       158 ~s--K~l~~G~p~gav~~~-~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      +|  |+++ |.+.|+++++ +++.+.+..                                 .++..++.+++.+.|++.
T Consensus       223 ~s~sK~l~-g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  301 (417)
T 3n0l_A          223 STTHKTLR-GPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR  301 (417)
T ss_dssp             EESSTTTC-SCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eeCccccC-CCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            66  9994 5567999998 677765533                                 124455556777777663


Q ss_pred             ---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-------C-CCCEEEEEcCCC----CCHHHHHHHHHH
Q psy11784        202 ---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-------E-YGNVLLFLPAMC----LTTENVLFIVST  260 (284)
Q Consensus       202 ---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~-~~~~lr~~p~l~----~t~~~id~~~~~  260 (284)
                               .+.++.+.+.+.......+.+.|.++||++.+..       + ..+.+|+.++..    ++++++++++++
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~  381 (417)
T 3n0l_A          302 KFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNY  381 (417)
T ss_dssp             TCEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred             CceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHH
Confidence                     1223444443222246678888889999998542       1 236799987643    679999999999


Q ss_pred             HHHHHHHH
Q psy11784        261 LNRIFTSL  268 (284)
Q Consensus       261 l~~~l~~~  268 (284)
                      |.+++++.
T Consensus       382 l~~~l~~~  389 (417)
T 3n0l_A          382 IADILDDV  389 (417)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhcc
Confidence            99998764

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.68  E-value=5.1e-16  Score=144.75  Aligned_cols=180  Identities=13%  Similarity=0.102  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEE-cceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccc-ccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQ-CGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+++++.++...  ..+|++ .|..+.++       ++++|+++|++||++||+||+| +|+.+.|. ....  .. ..|
T Consensus       174 ~~~l~~~i~~~~--~~~i~~~~~~~~~~~-------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~-~~~~--~~-~~d  240 (447)
T 3h7f_A          174 MDAVRATALEFR--PKVIIAGWSAYPRVL-------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGL-HPSP--VP-HAD  240 (447)
T ss_dssp             HHHHHHHHHHHC--CSEEEEECSSCCSCC-------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCCS--TT-TCS
T ss_pred             HHHHHHHHHhcC--CeEEEEcCCCCCCcc-------CHHHHHHHHHHcCCEEEEECCchhhhhcCCC-CCCC--CC-CCc
Confidence            678888886332  345555 56554332       5999999999999999999997 46544443 2111  11 246


Q ss_pred             EE--EecccccCCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHH
Q psy11784        155 II--TVGKPMGNGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       155 iv--~~sK~l~~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~  199 (284)
                      ++  +++|+++ |.+.|++++++++++.+..                                 .+++.++.+++.+.|+
T Consensus       241 i~~~s~sK~l~-G~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~  319 (447)
T 3h7f_A          241 VVSTTVHKTLG-GGRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLM  319 (447)
T ss_dssp             EEEEESSGGGC-CCSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEecCCcCCC-CCCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            66  5689996 5677999999877665433                                 1246666777777776


Q ss_pred             hc----cCc----------eeEEEEecccHHHHHHHHHHHHCCcEEe----ec----CCCCCEEEEEcCCC----CCHHH
Q psy11784        200 IN----LHI----------FWCLILLSITYYLYRYTRRMKEAKIIVA----NE----GEYGNVLLFLPAMC----LTTEN  253 (284)
Q Consensus       200 ~~----~G~----------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~----~~----~~~~~~lr~~p~l~----~t~~~  253 (284)
                      +.    .|+          ++.+++.+.......+.+.|.++||++.    +.    ...++.+|+.+|..    ++++|
T Consensus       320 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~ee  399 (447)
T 3h7f_A          320 APDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTE  399 (447)
T ss_dssp             SHHHHHTTCEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHH
T ss_pred             hccccCCCeEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHH
Confidence            52    022          3344442222234556666777899988    33    11346799988776    68999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy11784        254 VLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       254 id~~~~~l~~~l~~~~~  270 (284)
                      +++++++|++++++..+
T Consensus       400 i~~~~~~l~~~l~~~~~  416 (447)
T 3h7f_A          400 FTEVADIIATALATGSS  416 (447)
T ss_dssp             HHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHHHhccCc
Confidence            99999999999876543

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.67  E-value=6.2e-15  Score=135.23  Aligned_cols=223  Identities=13%  Similarity=0.038  Sum_probs=145.0

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.|++..  .....+|++...+||+...........     .+  ..+.+++..         +        .+++
T Consensus        90 ~~a~~~~l~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~~-----~g--~~~~~~~~~---------d--------~~~l  143 (398)
T 1gc0_A           90 MGAITSTLWTL--LRPGDEVLLGNTLYGCTFAFLHHGIGE-----FG--VKLRHVDMA---------D--------LQAL  143 (398)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEESSCCSHHHHHHHHTGGG-----GT--CEEEEECTT---------C--------HHHH
T ss_pred             HHHHHHHHHHH--hcCCCEEEEeCCCchhHHHHHHHHHHH-----cC--CEEEEECCC---------C--------HHHH
Confidence            36777777766  233467888889998865543221100     00  011222221         1        5677


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecc
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGK  160 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK  160 (284)
                      ++.++   +++++|++|++++..|.+.+    +++|.++|++||+++|+||+|+.+ ..+. ..   .++....+.+++|
T Consensus       144 ~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~-~~~~-~~---~~~~d~~~~S~sK  211 (398)
T 1gc0_A          144 EAAMT---PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP-YLQR-PL---ELGADLVVHSATK  211 (398)
T ss_dssp             HHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-HHCC-GG---GGTCSEEEEETTT
T ss_pred             HHhcC---CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-ccCC-ch---hhCceEEEECCcc
Confidence            77665   46899999999999898876    999999999999999999999843 2332 11   2344444457899


Q ss_pred             cccC-Ccce-eEEEecHHHHH-hchh----------------------------hhhHHHHHHHHHHHHHhc--------
Q psy11784        161 PMGN-GMPI-GAVITSRKIAE-SLNC----------------------------LDDNRPSGKYLVRPLGIN--------  201 (284)
Q Consensus       161 ~l~~-G~p~-gav~~~~~i~~-~~~~----------------------------l~~~~~~~~~l~~~L~~~--------  201 (284)
                      .+++ |.++ |+++++++.++ .+..                            +++..++.+++.+.|++.        
T Consensus       212 ~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~  291 (398)
T 1gc0_A          212 YLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHY  291 (398)
T ss_dssp             TTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred             ccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEEC
Confidence            9996 5787 88888877654 2211                            223455566666666552        


Q ss_pred             ------------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC----------------------------
Q psy11784        202 ------------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG----------------------------  235 (284)
Q Consensus       202 ------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------------------------  235 (284)
                                        .|.++.+++..   ......+.+.+.|+......                            
T Consensus       292 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g  368 (398)
T 1gc0_A          292 PGLASFPQYTLARQQMSQPGGMIAFELKG---GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYG  368 (398)
T ss_dssp             C----------------CCTTEEEEEETT---HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTT
T ss_pred             CCCCCCcCHHHHHhhCCCCceEEEEEECC---CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcC
Confidence                              25566776631   12334555667777765411                            


Q ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        236 EYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       236 ~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      ...+.||+++++..++++|+.+.+.|+++
T Consensus       369 ~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          369 ISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             CCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence            01379999999999999999998888754

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.67  E-value=7.3e-16  Score=138.67  Aligned_cols=180  Identities=11%  Similarity=0.043  Sum_probs=122.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCc--cccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG--RSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~g--r~G~~~~a~~~~g~~pD  154 (284)
                      .+++++.    .+++++|++++.++..|..+++.+++++|.++|++||++||+||+|..+.  ..|.   ....+....|
T Consensus       128 ~~~l~~~----~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~~~d  200 (359)
T 3pj0_A          128 IDDIKSL----REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQK---SAEEICALFD  200 (359)
T ss_dssp             HHHHHTC----SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTC---CHHHHHTTCS
T ss_pred             HHHHHhc----cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCC---CHHHhhccCC
Confidence            4556554    35689999998887665567899999999999999999999999885221  1121   0111112346


Q ss_pred             EE--EecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhcc-
Q psy11784        155 II--TVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGINL-  202 (284)
Q Consensus       155 iv--~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~~-  202 (284)
                      ++  +++|+++++.. |++++++++++.+..                             +++..++.+++.+.|+++. 
T Consensus       201 ~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g  279 (359)
T 3pj0_A          201 SVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSG  279 (359)
T ss_dssp             EEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTT
T ss_pred             EEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCC
Confidence            65  78899886533 777889888876542                             2355667778888887751 


Q ss_pred             ---------CceeEEEEecc-cHHHHHHHHHHHHCCcEEeecCC----CCCEEEEEc---CCCCCHHHHHHHHHHHHHH
Q psy11784        203 ---------HIFWCLILLSI-TYYLYRYTRRMKEAKIIVANEGE----YGNVLLFLP---AMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       203 ---------G~~~~i~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~----~~~~lr~~p---~l~~t~~~id~~~~~l~~~  264 (284)
                               +.++.+.+... ......+.+.|.++||++.++..    ..+++|+..   ....+.+++++++++|.++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          280 VKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             EEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             ceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence                     22344444211 23467888999999999987632    235788854   3446899999999998765

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.66  E-value=3.5e-16  Score=147.43  Aligned_cols=234  Identities=13%  Similarity=0.058  Sum_probs=155.5

Q ss_pred             CcHHHHHHHHHHHcc----C--CccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCC-CcCCCCCCCchHHH
Q psy11784          1 SEANDLALQLARAYT----G--RQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPD-TYRGEFSADDPQAA   73 (284)
Q Consensus         1 seA~e~AlklAr~~~----~--r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   73 (284)
                      |||+..|++.+|.++    |  +..|+.-..+ |.....+....+..          +..+|..+ .++    -|     
T Consensus       136 t~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~-h~~~~~~~~~~G~~----------~~~v~~~~~~~~----~d-----  195 (497)
T 3mc6_A          136 TESLLLACLSAKMYALHHRGITEPEIIAPVTA-HAGFDKAAYYFGMK----------LRHVELDPTTYQ----VD-----  195 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSSCEEEEETTS-CHHHHHHHHHSCCE----------EEEECBCTTTCS----BC-----
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCceEEEeCCc-cHHHHHHHHHcCCe----------EEEEecCcccCc----CC-----
Confidence            478999999998763    3  3456655544 44433333222211          22333322 111    11     


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccc-------cCc-ccc
Q psy11784         74 QKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRS-------GSH-FWA  145 (284)
Q Consensus        74 ~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~-------G~~-~~a  145 (284)
                         .++|++.++   +++++|+++..++..|.+.+    +++|.++|++||++||+||+|+|+.+.       |.. .+.
T Consensus       196 ---~~~l~~~i~---~~~~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~  265 (497)
T 3mc6_A          196 ---LGKVKKFIN---KNTVLLVGSAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLD  265 (497)
T ss_dssp             ---TTTTGGGCC---SSEEEEEEETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCS
T ss_pred             ---HHHHHHHHh---hCCEEEEEECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcccc
Confidence               345565554   46899999999988898776    889999999999999999999876432       110 123


Q ss_pred             ccccCCCCcEEEe--cccccCCcceeEEEecHHHHHhch----------------------------h------------
Q psy11784        146 FQTQGAVPDIITV--GKPMGNGMPIGAVITSRKIAESLN----------------------------C------------  183 (284)
Q Consensus       146 ~~~~g~~pDiv~~--sK~l~~G~p~gav~~~~~i~~~~~----------------------------~------------  183 (284)
                      ....|+  |++++  .|.+.+|.++|+++++++.+....                            .            
T Consensus       266 ~~~~g~--d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~  343 (497)
T 3mc6_A          266 FRVPGV--TSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGY  343 (497)
T ss_dssp             TTSTTC--CEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCC--cEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHH
Confidence            333444  66654  598888889999999776554220                            0            


Q ss_pred             ---hhhHHHHHHHHHHHHHh-ccC---------ceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCC
Q psy11784        184 ---LDDNRPSGKYLVRPLGI-NLH---------IFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLT  250 (284)
Q Consensus       184 ---l~~~~~~~~~l~~~L~~-~~G---------~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t  250 (284)
                         .++..++.+++.+.|++ +.|         .++.+..  ......++.+.|.++||.+.... ..+.+|+.++ .+|
T Consensus       344 ~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~--~~~~~~~l~~~L~~~Gi~v~~~~-~~~~~ri~~~-~~t  419 (497)
T 3mc6_A          344 IESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSS--KTLNIHELSDRLSKKGWHFNALQ-KPVALHMAFT-RLS  419 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEEC--TTTTHHHHHHHHHTTTCBCEECC-SSCCEEEECC-TTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeC--CCCCHHHHHHHHHhCCEEEecCC-CCCeEEEEEe-CCC
Confidence               23566778888888887 422         2223222  22357789999999999987653 3457899988 789


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q psy11784        251 TENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       251 ~~~id~~~~~l~~~l~~~~~  270 (284)
                      ++++++++++|+++++++.+
T Consensus       420 ~e~i~~~~~~L~~~l~~~~~  439 (497)
T 3mc6_A          420 AHVVDEICDILRTTVQELKS  439 (497)
T ss_dssp             TCTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988754

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.66  E-value=4.5e-15  Score=135.95  Aligned_cols=226  Identities=15%  Similarity=0.105  Sum_probs=144.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      |+|++.+++..+. ....+|++...+||+....+.. .+..          +..+|....   .+..|        .+++
T Consensus        88 t~a~~~~l~~~~~-~~gd~vl~~~~~~~~~~~~~~~-~g~~----------~~~~~~~~~---~~~~d--------~~~l  144 (399)
T 2oga_A           88 MDALQLALRGLGI-GPGDEVIVPSHTYIASWLAVSA-TGAT----------PVPVEPHED---HPTLD--------PLLV  144 (399)
T ss_dssp             HHHHHHHHHHTTC-CTTCEEEEESSSCTHHHHHHHH-TTCE----------EEEECBCSS---SSSBC--------HHHH
T ss_pred             HHHHHHHHHHhCC-CCcCEEEECCCccHHHHHHHHH-CCCE----------EEEEecCCC---CCCcC--------HHHH
Confidence            4677888877642 2346789999999985443321 1111          112332110   11111        5777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccC-ccccCccccccccCCCCcEEEec
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGM-GRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~-gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      ++.++   +++++|++++.   .|...+    +++|.++|++||+++|+||+|+.+ ...|.      ..+..+|++++|
T Consensus       145 ~~~i~---~~~~~v~~~n~---tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~------~~~~~~di~~~S  208 (399)
T 2oga_A          145 EKAIT---PRTRALLPVHL---YGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGR------RIGAGSSVAAFS  208 (399)
T ss_dssp             HHHCC---TTEEEECCBCG---GGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTE------ETTCTTCEEEEE
T ss_pred             HHhcC---CCCeEEEEeCC---cCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCe------ecccccCEEEEe
Confidence            77765   35788886543   455544    999999999999999999999732 11222      233347998884


Q ss_pred             ----ccccC-CcceeEEEec-HHHHHhchh---------------------------------------hhhHHHHHHHH
Q psy11784        160 ----KPMGN-GMPIGAVITS-RKIAESLNC---------------------------------------LDDNRPSGKYL  194 (284)
Q Consensus       160 ----K~l~~-G~p~gav~~~-~~i~~~~~~---------------------------------------l~~~~~~~~~l  194 (284)
                          |.+++ | +.|+++++ +++++.+..                                       .++.+++.+++
T Consensus       209 ~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l  287 (399)
T 2oga_A          209 FYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEY  287 (399)
T ss_dssp             CCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                99987 8 88999886 776543210                                       12444556666


Q ss_pred             HHHHHhccCc------------eeEEEEecccHHHHHHHHHHHHCCcEEeecCCC-------------------------
Q psy11784        195 VRPLGINLHI------------FWCLILLSITYYLYRYTRRMKEAKIIVANEGEY-------------------------  237 (284)
Q Consensus       195 ~~~L~~~~G~------------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-------------------------  237 (284)
                      .+.|+++.|+            ++.+.+.  .....++.+.|.++||.+.+..+.                         
T Consensus       288 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  365 (399)
T 2oga_A          288 LSGLAGLPGIGLPVTAPDTDPVWHLFTVR--TERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFA  365 (399)
T ss_dssp             HHHTTTCTTCBCCCCCTTEECCCSSEEEE--CSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHH
T ss_pred             HHHhccCCCccccCCCCCCcceeEEEEEE--CCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHH
Confidence            6666653121            1112221  124678999999999999863210                         


Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        238 GNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       238 ~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      .+.+|+.++..+|++|+++++++|+++++++
T Consensus       366 ~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          366 RQVLSLPIGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             HHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             hCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            1579999999999999999999999988754

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.65  E-value=3.3e-15  Score=137.11  Aligned_cols=229  Identities=15%  Similarity=0.163  Sum_probs=142.0

Q ss_pred             cHHHHHHHHHHHccCC-ccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGR-QNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         2 eA~e~AlklAr~~~~r-~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      +|++.+..+++.+.++ .+|++...+|++....+.... ..          +..+|..+.  ..+.-|        .+++
T Consensus       115 ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g-~~----------~~~~~~~~~--~~~~~d--------~~~l  173 (409)
T 4eu1_A          115 GALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAG-ME----------LTPYSYYDP--ATKGLN--------LAGM  173 (409)
T ss_dssp             HHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTT-CE----------EEEECCEET--TTTEEC--------HHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcC-Ce----------EEEEEeecC--cCCcCc--------HHHH
Confidence            5677777777777655 788888888887654433221 11          112222100  001111        6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC--cccccc-ccCCCCcEE-
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS--HFWAFQ-TQGAVPDII-  156 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~--~~~a~~-~~g~~pDiv-  156 (284)
                      ++.++..++..+.+++...++..|. ..+.+.+++|.++|++||+++|+||+|.+|+..+.  ..+... ..+..++++ 
T Consensus       174 ~~~l~~~~~~~~~i~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (409)
T 4eu1_A          174 LECLDKAPEGSVILVHACAHNPTGV-DPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIV  252 (409)
T ss_dssp             HHHHHHSCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEE
T ss_pred             HHHHHhCCCCcEEEEECCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEE
Confidence            8888754445555665444666665 56888999999999999999999999998865541  012222 224556654 


Q ss_pred             --Eeccccc-CCcceeEE---EecHH----HHHhchh--------------------hh-----------------hHHH
Q psy11784        157 --TVGKPMG-NGMPIGAV---ITSRK----IAESLNC--------------------LD-----------------DNRP  189 (284)
Q Consensus       157 --~~sK~l~-~G~p~gav---~~~~~----i~~~~~~--------------------l~-----------------~~~~  189 (284)
                        ++||.++ .|+++|++   +++++    +.+.+..                    ++                 ++++
T Consensus       253 ~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  332 (409)
T 4eu1_A          253 AQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAE  332 (409)
T ss_dssp             EEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence              7899998 68999995   56666    5444322                    11                 3344


Q ss_pred             HHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEcCCCCCHHHHHH
Q psy11784        190 SGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       190 ~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~  256 (284)
                      +.+++.+.|+++            .|++.++.+   .   .+++..++ ++||++.|+      .|++.+ .++++++++
T Consensus       333 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~---~---~~~~~~ll~~~gv~v~p~------~Ri~~~-~~~~~~i~~  399 (409)
T 4eu1_A          333 VRKRLVSELKACGSVHDWSHIERQVGMMAYTGL---T---REQVELLRSEYHIYMTLN------GRAAVS-GLNSTNVEY  399 (409)
T ss_dssp             HHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCC---C---HHHHHHHHHHHCEECCTT------CEEEGG-GCCTTTHHH
T ss_pred             HHHHHHHHHHhcCCCCCcceecCCceEEEEeCC---C---HHHHHHHHHcCCEEEcCC------CEEEEE-ecCHhhHHH
Confidence            455666666552            122323222   1   23455665 679999863      266654 467888999


Q ss_pred             HHHHHHHHH
Q psy11784        257 IVSTLNRIF  265 (284)
Q Consensus       257 ~~~~l~~~l  265 (284)
                      ++++|.+++
T Consensus       400 ~~~~l~~~l  408 (409)
T 4eu1_A          400 VSQAIHNVT  408 (409)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.65  E-value=6.8e-15  Score=133.16  Aligned_cols=175  Identities=10%  Similarity=0.068  Sum_probs=126.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh--CCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI--GGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .++|++.++.  .++++|++++.++..|.+.+    +++|.++|++|  |+++|+||+|+ +|..   .+....  ..+|
T Consensus       126 ~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~---~~~~~~--~~~d  193 (385)
T 2bkw_A          126 LELITEKLSQ--NSYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE---EFEFDE--WGVD  193 (385)
T ss_dssp             HHHHHHHHHH--SCCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS---CCCTTT--TTCS
T ss_pred             HHHHHHHHhc--CCCCEEEEEccCCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc---cccccc--cCce
Confidence            6778888863  25788999999999998877    89999999999  99999999997 3322   122222  3468


Q ss_pred             EEEe--cccccCCcceeEEEecHHHHH-hc-------------------------h--------h---------------
Q psy11784        155 IITV--GKPMGNGMPIGAVITSRKIAE-SL-------------------------N--------C---------------  183 (284)
Q Consensus       155 iv~~--sK~l~~G~p~gav~~~~~i~~-~~-------------------------~--------~---------------  183 (284)
                      ++++  +|+++++.++|++++++++++ .+                         .        .               
T Consensus       194 ~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  273 (385)
T 2bkw_A          194 FALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE  273 (385)
T ss_dssp             EEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred             EEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH
Confidence            7755  699987556799999887755 22                         0        0               


Q ss_pred             ---------hhhHHHHHHHHHHHH-Hhc-----c--------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCC---C
Q psy11784        184 ---------LDDNRPSGKYLVRPL-GIN-----L--------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE---Y  237 (284)
Q Consensus       184 ---------l~~~~~~~~~l~~~L-~~~-----~--------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~  237 (284)
                               .++.+++.+++.+.| +++     .        +.++++.+ +.   ..++.+.|.++||.+.++..   .
T Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~gi~v~~g~~~~~~  349 (385)
T 2bkw_A          274 ILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYV-AD---PPDVIAFLKSHGVVIAGGIHKDIG  349 (385)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEEC-SC---HHHHHHHHHHTTEECBCCCCTTTG
T ss_pred             HHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEec-CC---HHHHHHHHHHCCeEEeCCCCcccC
Confidence                     124556677888888 653     1        23444444 22   66788999999999987543   2


Q ss_pred             CCEEEEE-cC---CCCCHHHHHHHHHHHHHHHHH
Q psy11784        238 GNVLLFL-PA---MCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       238 ~~~lr~~-p~---l~~t~~~id~~~~~l~~~l~~  267 (284)
                      .+.+|++ .+   +.+|++|+++++++|++++++
T Consensus       350 ~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          350 PKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             GGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence            4789998 33   357999999999999887653

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.65  E-value=2.4e-15  Score=139.06  Aligned_cols=173  Identities=12%  Similarity=0.082  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++   +++++|++|+.++..|.+.+    +++|.++|++||++||+||+|+    +|. .+....+|....+.
T Consensus       156 ~~~l~~ai~---~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~----~~~-~~~~~~~g~div~~  223 (414)
T 3ndn_A          156 LSQWERALS---VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA----TPL-LQQGFPLGVDVVVY  223 (414)
T ss_dssp             HHHHHHHTS---SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT----HHH-HCCCGGGTCSEEEE
T ss_pred             HHHHHHhcC---CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCc----ccc-cCCchhcCCCeEec
Confidence            677777775   46889999999999998876    9999999999999999999997    221 12222445544455


Q ss_pred             EecccccC-C-cceeEEEecHHHHH-hchh---------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        157 TVGKPMGN-G-MPIGAVITSRKIAE-SLNC---------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       157 ~~sK~l~~-G-~p~gav~~~~~i~~-~~~~---------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +++|.+++ | +++|+++++++.+. .+..                           +++..++.+++.+.|++.     
T Consensus       224 S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~  303 (414)
T 3ndn_A          224 SGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRW  303 (414)
T ss_dssp             ETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             cCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeE
Confidence            68899987 7 78999999887765 3332                           234555666777777654     


Q ss_pred             ---------------------cCceeEEEEecc----cHHHHHHHHHHHHCCcEEeecC---------------------
Q psy11784        202 ---------------------LHIFWCLILLSI----TYYLYRYTRRMKEAKIIVANEG---------------------  235 (284)
Q Consensus       202 ---------------------~G~~~~i~~~~~----~~~~~~~~~~l~~~Gv~~~~~~---------------------  235 (284)
                                           .|.++++++.+.    ...+.++.+.|...++.+..++                     
T Consensus       304 v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~  383 (414)
T 3ndn_A          304 VRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGR  383 (414)
T ss_dssp             EECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHH
T ss_pred             EECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHH
Confidence                                 277899999532    4567788888876665554332                     


Q ss_pred             ----CCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        236 ----EYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       236 ----~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                          ...+.||++..    .|+++.+++.|++++
T Consensus       384 ~~~g~~~~~iRlsvG----~e~~~dli~dl~~al  413 (414)
T 3ndn_A          384 AAIGLGDGVVRISVG----LEDTDDLIADIDRAL  413 (414)
T ss_dssp             HHTTCCTTEEEEECC----SSCHHHHHHHHHHHH
T ss_pred             HhcCCCCCeEEEEeC----cCCHHHHHHHHHHhh
Confidence                23467888543    466777777777765

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.65  E-value=4.3e-15  Score=134.32  Aligned_cols=225  Identities=13%  Similarity=0.186  Sum_probs=142.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      |+|++.|++..+. ....+|++...+||+....+.... ..          +..+|..+    .+.-|        .+++
T Consensus        63 t~a~~~~~~~~~~-~~gd~v~~~~~~~~~~~~~~~~~g-~~----------~~~~~~~~----~~~~d--------~~~l  118 (374)
T 3uwc_A           63 TDALAMSFKMLNI-GAGDEVITCANTFIASVGAIVQAG-AT----------PVLVDSEN----GYVID--------PEKI  118 (374)
T ss_dssp             HHHHHHHHHHTTC-CTTCEEEEESSSCHHHHHHHHHTT-CE----------EEEECBCT----TSSBC--------GGGT
T ss_pred             HHHHHHHHHHcCC-CCCCEEEECCCccHHHHHHHHHcC-CE----------EEEEecCC----CCCcC--------HHHH
Confidence            4677777776642 234678888888888655433221 11          11223221    11111        3455


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec-
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG-  159 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s-  159 (284)
                      ++.++   +++++|+  |. ...|...+    +++|.++|++||+++|+||+|+.+.     .+.....+..+|++++| 
T Consensus       119 ~~~~~---~~~~~v~--~~-n~~G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~-----~~~~~~~~~~~d~~~~s~  183 (374)
T 3uwc_A          119 EAAIT---DKTKAIM--PV-HYTGNIAD----MPALAKIAKKHNLHIVEDACQTILG-----RINDKFVGSWGQFACFSL  183 (374)
T ss_dssp             GGGCC---TTEEEEC--CB-CGGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTC-----EETTEETTSSSSEEEEEC
T ss_pred             HHhCC---CCceEEE--Ee-CCcCCcCC----HHHHHHHHHHcCCEEEEeCCCccCc-----eeCCeeccccccEEEEeC
Confidence            55553   3577777  33 34565554    9999999999999999999998321     22334455567999888 


Q ss_pred             ---ccccC-CcceeEEEecH-HHHHhchh---------------------------------------hhhHHHHHHHHH
Q psy11784        160 ---KPMGN-GMPIGAVITSR-KIAESLNC---------------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       160 ---K~l~~-G~p~gav~~~~-~i~~~~~~---------------------------------------l~~~~~~~~~l~  195 (284)
                         |++++ |. .|++++++ ++.+.+..                                       .++.+++.+++.
T Consensus       184 ~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~  262 (374)
T 3uwc_A          184 HPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYD  262 (374)
T ss_dssp             SSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               99987 65 77777654 45332211                                       234556666677


Q ss_pred             HHHHhccC-ce------------eEEEEecccHHHHHHHHHHHHCCcEEeecCC-------------------------C
Q psy11784        196 RPLGINLH-IF------------WCLILLSITYYLYRYTRRMKEAKIIVANEGE-------------------------Y  237 (284)
Q Consensus       196 ~~L~~~~G-~~------------~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------------------~  237 (284)
                      +.|+++.+ +-            +.+.+.  ......+.+.|.++||.+.++.+                         .
T Consensus       263 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (374)
T 3uwc_A          263 QSFVDLSEFIDVPVRREGVYHVFHIYVLR--VKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHG  340 (374)
T ss_dssp             HHTGGGTTTEECCCCCTTEECCCSSEEEE--ETTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHH
T ss_pred             HHhccCCCeEEeccCCCCCceeeEEEEEE--cCCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHH
Confidence            77665322 11            111111  12467899999999999886531                         0


Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        238 GNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       238 ~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      .+.+|+.++..+|++||++++++|++++++
T Consensus       341 ~~~lrl~~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          341 EAVITLPAHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             HHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             hCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence            168999999999999999999999998864

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.64  E-value=9.1e-15  Score=130.85  Aligned_cols=184  Identities=13%  Similarity=0.194  Sum_probs=127.8

Q ss_pred             HHHHHHHHHhc---CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCc---cccCccccccccC
Q psy11784         77 AQAARNIMEAH---RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG---RSGSHFWAFQTQG  150 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~g---r~G~~~~a~~~~g  150 (284)
                      .+++++.++..   .+++++|++++.++..|..+.|.+.+++|.++|++||+++|+||+|. ++   ..|.   ......
T Consensus       116 ~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~---~~~~~~  191 (347)
T 1jg8_A          116 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGV---PVKEYA  191 (347)
T ss_dssp             HHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCC---CHHHHH
T ss_pred             HHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCC---ChHHhc
Confidence            67788777531   12589999999998874456788999999999999999999999874 21   1121   111111


Q ss_pred             CCCc--EEEecccccCCcceeE-EEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHH
Q psy11784        151 AVPD--IITVGKPMGNGMPIGA-VITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       151 ~~pD--iv~~sK~l~~G~p~ga-v~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L  198 (284)
                      ...|  +++++|++++  |+|+ +++++++++.+..                             +++..++.+++.+.|
T Consensus       192 ~~~d~~~~s~sK~l~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L  269 (347)
T 1jg8_A          192 GYADSVMFCLSKGLCA--PVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKL  269 (347)
T ss_dssp             HTCSEEEEESSSTTCC--SSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHH
T ss_pred             ccccEEEEecccccCC--CceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1233  3468999975  4674 5567777654322                             223345667777777


Q ss_pred             Hhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        199 GIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       199 ~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +++         .|.++++.+........++++.|.++||.+.+.+  .+.+|+.++..+|++|+++++++|.++++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~--~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~  346 (347)
T 1jg8_A          270 KEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  346 (347)
T ss_dssp             HHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEEE--TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCceeccCCCcceEEEEEcccccCCHHHHHHHHHHCCCEEecCC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence            663         2445555552112346789999999999998754  4789999988999999999999999987653

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.64  E-value=9.8e-15  Score=133.63  Aligned_cols=139  Identities=16%  Similarity=0.063  Sum_probs=95.0

Q ss_pred             cHHHHHHHHHHHccCCccEEEEcCCCcccchhhh---cCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          2 EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLL---DISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         2 eA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      +|++.+++..  .....+|++...+|||......   ...+.          .+.++|..        +         .+
T Consensus        85 ~ai~~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~----------~~~~v~~~--------d---------~~  135 (389)
T 3acz_A           85 GAISSSTLAF--LQKGDHLIAGDTLYGCTVSLFTHWLPRFGI----------EVDLIDTS--------D---------VE  135 (389)
T ss_dssp             HHHHHHHTTT--CCTTCEEEEESSCCHHHHHHHHHHHHHTTC----------EEEEECTT--------C---------HH
T ss_pred             HHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC----------EEEEECCC--------C---------HH
Confidence            5566666544  2334578888888888544321   11111          11223321        1         56


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE--
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII--  156 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv--  156 (284)
                      ++++.++   +++++|++|+.++..|.+.+    +++|.++|++||+++|+||+|+++ ..+. .+     +..+|++  
T Consensus       136 ~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~-~~~~-~~-----~~~~di~~~  201 (389)
T 3acz_A          136 KVKAAWK---PNTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFTSP-CFLK-PL-----ELGADIALH  201 (389)
T ss_dssp             HHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT-TTCC-GG-----GTTCSEEEE
T ss_pred             HHHHhcC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc-cccC-cc-----ccCCeEEEE
Confidence            6776664   46899999999999998886    999999999999999999999854 2222 11     2458888  


Q ss_pred             EecccccC-Ccce-eEEEecH-HHHHhchh
Q psy11784        157 TVGKPMGN-GMPI-GAVITSR-KIAESLNC  183 (284)
Q Consensus       157 ~~sK~l~~-G~p~-gav~~~~-~i~~~~~~  183 (284)
                      +++|.+++ |.++ |++++++ ++++.+..
T Consensus       202 S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~  231 (389)
T 3acz_A          202 SVSKYINGHGDVIGGVSSAKTAEDIATIKF  231 (389)
T ss_dssp             ETTTTTTCSSCCCCEEEEESSHHHHHHHHH
T ss_pred             CChhhccCCCCceeEEEEECcHHHHHHHHH
Confidence            68899987 4787 9999998 88776543

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.63  E-value=1.6e-14  Score=128.59  Aligned_cols=162  Identities=12%  Similarity=0.098  Sum_probs=115.8

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEeccccc-CCcce
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG-NGMPI  168 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~-~G~p~  168 (284)
                      +..++++...++..|...+    ++++.++|+++++ +|+||+|.+|+..+. . .....+..-.+.++||.++ .|+++
T Consensus       135 ~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~-~-~~~~~~~~i~~~S~sK~~g~~G~r~  207 (337)
T 3p1t_A          135 RDDCVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRA-R-GLAYGENELVFRSFSKSYGLAGLRL  207 (337)
T ss_dssp             TTEEEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSS-S-CCCCBTTEEEEEESSSTTCCTTTCC
T ss_pred             CCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccc-c-ccccCCCEEEEeeCchhccCcchhe
Confidence            4567777777888888887    7789999999997 566999998865443 1 1111111122447899998 78999


Q ss_pred             eEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-------cCceeEEEEecc
Q psy11784        169 GAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-------LHIFWCLILLSI  213 (284)
Q Consensus       169 gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-------~G~~~~i~~~~~  213 (284)
                      |++++++++++.+..                            ++++.++.+++.+.|+++       .|.++.+.. ++
T Consensus       208 G~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~-~~  286 (337)
T 3p1t_A          208 GALFGPSELIAAMKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVASSEANFVLVEN-AA  286 (337)
T ss_dssp             EEEECCHHHHHHHHTTSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSEEEEEC-TT
T ss_pred             EEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCcCEECCCCCeEEEEEc-CC
Confidence            999999998887654                            224555667777777764       355555554 22


Q ss_pred             cHHHHHHHHHHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        214 TYYLYRYTRRMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       214 ~~~~~~~~~~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                         ...+.+.|.++||++.++..+  .+++|++..   ++++++++++.|++++
T Consensus       287 ---~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          287 ---GERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYS  334 (337)
T ss_dssp             ---THHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence               346777888999999987543  479999754   7999999999988764

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.63  E-value=1.4e-14  Score=132.43  Aligned_cols=223  Identities=14%  Similarity=0.108  Sum_probs=144.5

Q ss_pred             cHHHHHHHHH-HHccCCccEEEEcCCCcccchhhhcC---CCCcccccCCCCCceEEccCC-CCcCCCCCCCchHHHHHH
Q psy11784          2 EANDLALQLA-RAYTGRQNIVVVDAAYHGTVNLLLDI---SPRAFMLSSEKKPWVHVIPFP-DTYRGEFSADDPQAAQKY   76 (284)
Q Consensus         2 eA~e~AlklA-r~~~~r~~il~~~~~yHG~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   76 (284)
                      +|++.+++.. +......+|++...+|++.......+   .+..          +.++|.. +.    ..-|        
T Consensus        97 ~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~----------v~~v~~~~~~----~~~d--------  154 (406)
T 3cai_A           97 VLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAK----------VKWAEVDIET----GELP--------  154 (406)
T ss_dssp             HHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCE----------EEEECCCTTT----CCCC--------
T ss_pred             HHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCe----------EEEEecCccc----CCcC--------
Confidence            5666666632 23444567888888888865433221   1111          1223322 11    1111        


Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +++|++.+.   +++++|+++++++..|.+.+    +++|.++|++||+++|+||+|+ +|...   +....++  +|++
T Consensus       155 ~~~l~~~l~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~~--~d~~  221 (406)
T 3cai_A          155 TWQWESLIS---KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL---LDIRETD--ADVV  221 (406)
T ss_dssp             GGGHHHHCC---TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC---CCHHHHC--CSEE
T ss_pred             HHHHHHHhC---CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC---CCchhcC--CCEE
Confidence            456666664   46899999999999998877    8999999999999999999997 33221   2223333  6776


Q ss_pred             E--ecccccCCccee-EEEecHHHHHhchh-----------------------------hh-------------------
Q psy11784        157 T--VGKPMGNGMPIG-AVITSRKIAESLNC-----------------------------LD-------------------  185 (284)
Q Consensus       157 ~--~sK~l~~G~p~g-av~~~~~i~~~~~~-----------------------------l~-------------------  185 (284)
                      +  ++|.++.+  +| ++++++++++.+..                             ++                   
T Consensus       222 ~~s~~K~~g~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~  299 (406)
T 3cai_A          222 TVNAHAWGGPP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAV  299 (406)
T ss_dssp             EEEGGGGTSCS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHH
T ss_pred             EeehhhhcCCC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhh
Confidence            5  57977543  88 99999888754310                             11                   


Q ss_pred             -------hHHHHHHHHHHHHHhcc-----------CceeEEEEecccHHHHHHHHHHHHCCcEEeecC-----------C
Q psy11784        186 -------DNRPSGKYLVRPLGINL-----------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-----------E  236 (284)
Q Consensus       186 -------~~~~~~~~l~~~L~~~~-----------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------~  236 (284)
                             +.+++.+++.+.|+++.           +.++.+.+ +. ....++.+.|.++||.+.++.           .
T Consensus       300 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~  377 (406)
T 3cai_A          300 SMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAV-HK-VPADRVVQRLADNGILAIANTGSRVLDVLGVND  377 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEE-TT-BCHHHHHHHHHHTTEECEECCSCHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEE-CC-cCHHHHHHHHHHCCcEEecCChHHHHHHcCCCC
Confidence                   12344555666665531           22444544 21 246678899999999998754           1


Q ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        237 YGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       237 ~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      ..+.+|+.++..+|++|+++++++|++
T Consensus       378 ~~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          378 VGGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             TTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence            247899999999999999999999864

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.63  E-value=2.3e-14  Score=128.58  Aligned_cols=169  Identities=8%  Similarity=0.126  Sum_probs=119.8

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc--ccccCCCCcEEEeccccc-CCc
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA--FQTQGAVPDIITVGKPMG-NGM  166 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a--~~~~g~~pDiv~~sK~l~-~G~  166 (284)
                      ++.+|+++..++..|.+.+ .+.+++|.++|++  .++|+||+|++|++.+. ...  ....+....+.++||.++ .|+
T Consensus       129 ~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~--~~li~Dea~~~~~~~~~-~~~~~~~~~~~~i~~~S~sK~~~~~G~  204 (350)
T 3fkd_A          129 NMDFCWLCNPNNPDGRLLQ-RTEILRLLNDHPD--TTFVLDQSYVSFTTEEV-IRPADIKGRKNLVMVYSFSHAYGIPGL  204 (350)
T ss_dssp             TCSEEEEESSCTTTCCCCC-HHHHHHHHHHCTT--SEEEEECTTTTSCSSCC-CCGGGGTTCSSEEEEEESHHHHSCGGG
T ss_pred             CCCEEEEeCCCCCcCCCCC-HHHHHHHHHhCCC--CEEEEECchhhhccCcc-hhhHHhhcCCCEEEEecCchhccCcch
Confidence            4667777766777787654 4445555555554  49999999998877664 211  112222233457899998 789


Q ss_pred             ceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc--------cCceeEEEE
Q psy11784        167 PIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN--------LHIFWCLIL  210 (284)
Q Consensus       167 p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~--------~G~~~~i~~  210 (284)
                      ++|++++++++++.+..                            +++..++.+++.+.|+++        .|.++.+.+
T Consensus       205 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~  284 (350)
T 3fkd_A          205 RIGYIVANKDFMKRVAAFSTPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTTFFLLRL  284 (350)
T ss_dssp             CCEEEECCHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEECCCSSSEEEEEE
T ss_pred             heEeEEeCHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEECCCCCcEEEEEC
Confidence            99999999999887654                            223446777888888765        456666766


Q ss_pred             ecccHHHHHHHHHHHH-CCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        211 LSITYYLYRYTRRMKE-AKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       211 ~~~~~~~~~~~~~l~~-~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      . .. ...++++.|.+ +||++.++..+    .+.+|+++.   ++++++++++.|++++++
T Consensus       285 ~-~~-~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          285 K-KG-TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             S-SS-CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred             C-CC-CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence            3 32 57789999998 99999987543    578999754   889999999988877654

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.63  E-value=1.4e-14  Score=130.25  Aligned_cols=177  Identities=14%  Similarity=0.038  Sum_probs=121.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-----cCccccCccccccccCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-----GMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-----G~gr~G~~~~a~~~~g~  151 (284)
                      .+++++.    . ++++|++++.++..|..+++.+.+++|.++|++||++||+||+|.     .+|+... .+.     -
T Consensus       127 ~~~l~~~----~-~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~~~-----~  195 (357)
T 3lws_A          127 LDEIKAL----P-DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAA-EIA-----G  195 (357)
T ss_dssp             HHHHHTC----C-SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHH-HHH-----T
T ss_pred             HHHHhcC----c-CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChH-HHH-----h
Confidence            4555543    2 378899999887764467789999999999999999999999875     2233221 111     1


Q ss_pred             CCcE--EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        152 VPDI--ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       152 ~pDi--v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      ..|+  .+++|++++... |++++++++++.+..                             +++..++.+++.+.|++
T Consensus       196 ~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~  274 (357)
T 3lws_A          196 LFDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNA  274 (357)
T ss_dssp             TSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             cCCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2344  489999964322 888889888776542                             22456677788888877


Q ss_pred             c----------cCceeEEEEeccc-HHHHHHHHHHHHCCcEEeecC---CCCCEEEEEcC---CCCCHHHHHHHHHHHHH
Q psy11784        201 N----------LHIFWCLILLSIT-YYLYRYTRRMKEAKIIVANEG---EYGNVLLFLPA---MCLTTENVLFIVSTLNR  263 (284)
Q Consensus       201 ~----------~G~~~~i~~~~~~-~~~~~~~~~l~~~Gv~~~~~~---~~~~~lr~~p~---l~~t~~~id~~~~~l~~  263 (284)
                      +          .+.++++.+.... .....+.+.|.++||++.++.   +....+|++..   +..+++++++++++|.+
T Consensus       275 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~  354 (357)
T 3lws_A          275 LPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQ  354 (357)
T ss_dssp             STTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHH
T ss_pred             CCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHH
Confidence            5          2345556553211 236778889999999998763   22247888654   44689999999999987


Q ss_pred             HH
Q psy11784        264 IF  265 (284)
Q Consensus       264 ~l  265 (284)
                      ++
T Consensus       355 al  356 (357)
T 3lws_A          355 AF  356 (357)
T ss_dssp             HC
T ss_pred             hc
Confidence            64

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.63  E-value=1e-14  Score=130.28  Aligned_cols=159  Identities=14%  Similarity=0.093  Sum_probs=110.5

Q ss_pred             CeeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc-ccccCCCCcEEEeccccc-CCc
Q psy11784         90 NIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA-FQTQGAVPDIITVGKPMG-NGM  166 (284)
Q Consensus        90 ~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a-~~~~g~~pDiv~~sK~l~-~G~  166 (284)
                      ++++|+ ..| ++..|.+. |.+.+++|.++|   | ++|+||+|++|+. +. ... ....+....+.++||.++ .|+
T Consensus       138 ~~~~v~l~~p-~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~-~~~~~~~~~~~i~~~s~sK~~g~~G~  209 (335)
T 1uu1_A          138 EGDVVFIPNP-NNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHG-ES-YVDFLKKYENLAVIRTFSKAFSLAAQ  209 (335)
T ss_dssp             TTEEEEEESS-CTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CC-CGGGGGTCSSEEEEEESTTTTTCGGG
T ss_pred             CCCEEEEeCC-CCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcc-hh-HHHHhhhCCCEEEEecchhhcCCccc
Confidence            456666 666 66677654 566666555555   8 9999999997743 22 222 122333344568999998 789


Q ss_pred             ceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-------cCceeEEEEe
Q psy11784        167 PIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-------LHIFWCLILL  211 (284)
Q Consensus       167 p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-------~G~~~~i~~~  211 (284)
                      ++|++++++++++.+..                            .++++++.+++.+.|++.       .|.++++.+ 
T Consensus       210 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~-  288 (335)
T 1uu1_A          210 RVGYVVASEKFIDAYNRVRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRITDSRGNFVFVFM-  288 (335)
T ss_dssp             CCEEEEECHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCCSSEEEEEC-
T ss_pred             CeEEEEeCHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEcCCCCeEEEEEC-
Confidence            99999999998876644                            224556677777777653       355666665 


Q ss_pred             cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        212 SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       212 ~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      +. ....++.+.|.++||++.+   ..+++|+++.   +++|+++++++|+++
T Consensus       289 ~~-~~~~~~~~~l~~~gi~v~~---~~~~iRis~~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          289 EK-EEKERLLEHLRTKNVAVRS---FREGVRITIG---KREENDMILRELEVF  334 (335)
T ss_dssp             CT-HHHHHHHHHHHHHTEEEEE---ETTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred             CC-CCHHHHHHHHHHCCEEEEE---CCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence            22 3567789999999999997   3578999863   578899999988653

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.63  E-value=2.8e-14  Score=131.47  Aligned_cols=169  Identities=15%  Similarity=0.138  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .++|++.++   +++++|++|++++..|.+.+    +++|.++|++||+++|+||+|++++....      .....+|++
T Consensus       130 ~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~~~------~~~~~~di~  196 (412)
T 2cb1_A          130 PEAVREALS---AKTRAVFVETVANPALLVPD----LEALATLAEEAGVALVVDNTFGAAGALCR------PLAWGAHVV  196 (412)
T ss_dssp             HHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGTTTTSCC------GGGGTCSEE
T ss_pred             HHHHHHHhc---cCCeEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccccccCC------ccccCCeEE
Confidence            466777664   46899999999999998876    99999999999999999999986532222      122458888


Q ss_pred             E--ecccccC-CcceeEEEecH----------------------------HHHHhchh---------------------h
Q psy11784        157 T--VGKPMGN-GMPIGAVITSR----------------------------KIAESLNC---------------------L  184 (284)
Q Consensus       157 ~--~sK~l~~-G~p~gav~~~~----------------------------~i~~~~~~---------------------l  184 (284)
                      +  ++|.+++ |.++|++++.+                            ++.+.++.                     +
T Consensus       197 ~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l  276 (412)
T 2cb1_A          197 VESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGL  276 (412)
T ss_dssp             EEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHG
T ss_pred             EECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCC
Confidence            6  7899986 57888887644                            33332211                     1


Q ss_pred             -------hhHHHHHHHHHHHHHhcc--------------------------CceeEEEEecccHHHHHHHHHHHHCCcEE
Q psy11784        185 -------DDNRPSGKYLVRPLGINL--------------------------HIFWCLILLSITYYLYRYTRRMKEAKIIV  231 (284)
Q Consensus       185 -------~~~~~~~~~l~~~L~~~~--------------------------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~  231 (284)
                             ++..++.+++.+.|.+..                          |.++.+.+ .   ....+.+.+.+.|+++
T Consensus       277 ~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~---~~~~~~~~l~~~~i~~  352 (412)
T 2cb1_A          277 ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G---DLERASRFLGAIRLLK  352 (412)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S---SHHHHHHHHHHCSSEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C---CHHHHHHHHHhCCeee
Confidence                   233467778888887641                          22455555 3   2345566666789887


Q ss_pred             eecC----------C------------------CCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        232 ANEG----------E------------------YGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       232 ~~~~----------~------------------~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                       .++          +                  ..+.||++.....++++|+.+++.|++
T Consensus       353 -~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          353 -AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA  411 (412)
T ss_dssp             -CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred             -ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence             431          1                  147899999999999999999988864

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.62  E-value=4.1e-14  Score=133.77  Aligned_cols=192  Identities=14%  Similarity=0.101  Sum_probs=125.4

Q ss_pred             HHHHHHHHHhc---CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcccc-Ccccccc----c
Q psy11784         77 AQAARNIMEAH---RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSG-SHFWAFQ----T  148 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G-~~~~a~~----~  148 (284)
                      +++|++.++..   +.++.+|++...++..|. .++.+.+++|.++|++||+++|+||+|..+...+ ..+..+.    .
T Consensus       221 ~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~-~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~  299 (500)
T 3tcm_A          221 TSDVKKQLEDARSRGINVRALVVINPGNPTGQ-VLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRS  299 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECCCCCCcc-cCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHH
Confidence            67788877632   224666665544555665 5688899999999999999999999999764322 1111211    1


Q ss_pred             cCC-CC--c-EE--Eecccc-c-CCcceeEEEe---cHHHHHhchh-------------------h--------------
Q psy11784        149 QGA-VP--D-II--TVGKPM-G-NGMPIGAVIT---SRKIAESLNC-------------------L--------------  184 (284)
Q Consensus       149 ~g~-~p--D-iv--~~sK~l-~-~G~p~gav~~---~~~i~~~~~~-------------------l--------------  184 (284)
                      ++. ..  + ++  ++||++ | .|+++|++++   ++++++.+..                   +              
T Consensus       300 ~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  379 (500)
T 3tcm_A          300 LGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYK  379 (500)
T ss_dssp             TTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHH
T ss_pred             hccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHHH
Confidence            221 12  2 33  789999 4 4899999998   8888776543                   1              


Q ss_pred             -------hhHHHHHHHHHHHHHhc---------cCceeEEEEe-cccH----------HHHHHH-HHHHHCCcEEeecCC
Q psy11784        185 -------DDNRPSGKYLVRPLGIN---------LHIFWCLILL-SITY----------YLYRYT-RRMKEAKIIVANEGE  236 (284)
Q Consensus       185 -------~~~~~~~~~l~~~L~~~---------~G~~~~i~~~-~~~~----------~~~~~~-~~l~~~Gv~~~~~~~  236 (284)
                             ++++++.+++.+.|+++         .|++.++.+. +...          ....++ +.|.++||++.|+..
T Consensus       380 ~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~  459 (500)
T 3tcm_A          380 AEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSG  459 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcc
Confidence                   13445556667777664         3444443332 1110          012233 455578999998754


Q ss_pred             C-----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        237 Y-----GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       237 ~-----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      +     .+.+|++..  .+++++++++++|.++++++.++
T Consensus       460 f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~~  497 (500)
T 3tcm_A          460 FGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHEAFMSE  497 (500)
T ss_dssp             TCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            3     347999866  89999999999999999887654

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.62  E-value=1.2e-14  Score=129.55  Aligned_cols=217  Identities=12%  Similarity=0.015  Sum_probs=139.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhc---CCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLD---ISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      ++|++.+++..  .....+|+....+||+.......   ..+.          .+.++|..        +         .
T Consensus        23 ~~a~~~~~~~~--~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~--------d---------~   73 (331)
T 1pff_A           23 MGAIAASVWTF--LKAGDHLISDDCLYGCTHALFEHQLRKFGV----------EVDFIDMA--------V---------P   73 (331)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC----------EEEEECTT--------S---------T
T ss_pred             HHHHHHHHHHh--cCCCCEEEEcCCCcchHHHHHHHHHHhcCC----------EEEEeCCC--------C---------H
Confidence            36777777754  22335688888888886544322   1111          01222221        1         3


Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHH-hCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE-IGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~-~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +++++.++   +++++|+++++++..|.+.+    +++|.++|++ ||+++|+||+|+.+ .... ..   .++  +|++
T Consensus        74 ~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~-~~~~-~~---~~~--~d~~  139 (331)
T 1pff_A           74 GNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-ILTN-PL---DLG--VDIV  139 (331)
T ss_dssp             THHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-HHCC-GG---GGT--CSEE
T ss_pred             HHHHHhhc---CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccc-ccCC-hh---hcC--CcEE
Confidence            55666554   46899999999999998886    9999999999 99999999999732 2221 11   233  5555


Q ss_pred             --EecccccC-Ccc-eeEEEecH-HHHHhchh---------------------hh-------hHHHHHHHHHHHHHhc--
Q psy11784        157 --TVGKPMGN-GMP-IGAVITSR-KIAESLNC---------------------LD-------DNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       157 --~~sK~l~~-G~p-~gav~~~~-~i~~~~~~---------------------l~-------~~~~~~~~l~~~L~~~--  201 (284)
                        +++|.+++ |.+ .|++++++ ++++.+..                     ++       +..+..+.+.+.|++.  
T Consensus       140 ~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (331)
T 1pff_A          140 VHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKA  219 (331)
T ss_dssp             EEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence              68999986 577 78999998 87665422                     11       1122233333333221  


Q ss_pred             ------------------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC----------------------
Q psy11784        202 ------------------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG----------------------  235 (284)
Q Consensus       202 ------------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------------------  235 (284)
                                              .|.++.+.+.    ....+.+.|.++||++++.+                      
T Consensus       220 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~  295 (331)
T 1pff_A          220 VKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD----GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKE  295 (331)
T ss_dssp             CCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS----SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHH
T ss_pred             eeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC----CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHH
Confidence                                    2446666663    24567777888999775431                      


Q ss_pred             ------CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        236 ------EYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       236 ------~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                            ...+.+|++++...|+++++.+++.|+++
T Consensus       296 ~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          296 EREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             HHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             HHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence                  11479999999999999999999988754

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.61  E-value=1.5e-14  Score=130.33  Aligned_cols=233  Identities=14%  Similarity=0.086  Sum_probs=147.9

Q ss_pred             CcHHHHHHHHHHHc--cCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAY--TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~--~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      ++|++.|++.....  .....|+.....|++.......+.....        .+..+|....    +.-|        .+
T Consensus        70 ~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~--------~~~~v~~~~~----~~~d--------~~  129 (382)
T 4hvk_A           70 TEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGF--------EVEYIPVGKY----GEVD--------VS  129 (382)
T ss_dssp             HHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTC--------EEEEECBCTT----SCBC--------HH
T ss_pred             hHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCC--------EEEEeccCCC----CCcC--------HH
Confidence            36777787765421  2345677777777775543322110000        0122332211    1111        57


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE-
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT-  157 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~-  157 (284)
                      +|++.+.   +++++|++++.++..|...+    +++|.++|++||+ +|+||+|+ +|..   .+.....  .+|+++ 
T Consensus       130 ~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~---~~~~~~~--~~d~~~~  195 (382)
T 4hvk_A          130 FIDQKLR---DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI---EVDVEKI--GADMLTI  195 (382)
T ss_dssp             HHHHHCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB---CCCHHHH--TCSEEEE
T ss_pred             HHHHHhc---cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC---CCCchhc--CCCEEEE
Confidence            7777664   46889999999999998877    9999999999999 99999996 3221   1222222  357765 


Q ss_pred             -ecccccCCcceeEEEecHHH--HHhch---------h-------------------------hhhHHHHHHHHHHHHHh
Q psy11784        158 -VGKPMGNGMPIGAVITSRKI--AESLN---------C-------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       158 -~sK~l~~G~p~gav~~~~~i--~~~~~---------~-------------------------l~~~~~~~~~l~~~L~~  200 (284)
                       ++|.++ +.++|+++++++.  ...+.         .                         .++.+++.+++.+.|++
T Consensus       196 s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~  274 (382)
T 4hvk_A          196 SSNDIYG-PKGVGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK  274 (382)
T ss_dssp             ESGGGTS-CTTCEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eHHHhcC-CCceEEEEEcCccCcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence             459643 3347888776542  00000         0                         23566677777777776


Q ss_pred             cc------------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC---------------------CCEEEEEcCC
Q psy11784        201 NL------------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY---------------------GNVLLFLPAM  247 (284)
Q Consensus       201 ~~------------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---------------------~~~lr~~p~l  247 (284)
                      +.            +.++.+.+.  ......+.+.|.++||.+.++...                     .+.+|+.++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~  352 (382)
T 4hvk_A          275 IEESYLNGHPEKRLPNNVNVRFS--YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGR  352 (382)
T ss_dssp             STTEEECSCSSSBCTTEEEEEET--TCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCT
T ss_pred             CCCeEEeCCccccCCCEEEEEEC--CCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCC
Confidence            41            123444442  224677889999999999865311                     4789999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        248 CLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      .+|++|+++++++|+++++++.+
T Consensus       353 ~~t~e~i~~~~~~l~~~~~~~~~  375 (382)
T 4hvk_A          353 YNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988764

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.61  E-value=1e-13  Score=131.50  Aligned_cols=186  Identities=17%  Similarity=0.185  Sum_probs=128.3

Q ss_pred             HHHHHHHHHhc---CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEAH---RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .++|++.++..   +..+++|++....+..|.+.+    +++|.++|++||+++++|++|+++..... .+.....++ .
T Consensus       243 ~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~vD~a~~~~~~~~~-~~~~~~~g~~~  317 (515)
T 2jis_A          243 PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHVDAAWGGSVLLSQ-THRHLLDGIQR  317 (515)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGGGGTTGGG
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEEehhhhhHHHhCh-hhHhhcCCCcc
Confidence            67788887632   224889999887778888777    99999999999999999999997755433 233334455 7


Q ss_pred             CcEEEe--cccccCCcceeEEEecHH--HHHh--------c----h-------------h--------------------
Q psy11784        153 PDIITV--GKPMGNGMPIGAVITSRK--IAES--------L----N-------------C--------------------  183 (284)
Q Consensus       153 pDiv~~--sK~l~~G~p~gav~~~~~--i~~~--------~----~-------------~--------------------  183 (284)
                      +|++++  .|.+++++++|+++++++  +++.        +    .             +                    
T Consensus       318 aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~  397 (515)
T 2jis_A          318 ADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQ  397 (515)
T ss_dssp             CSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHH
Confidence            899988  799987778999999866  5432        1    0             0                    


Q ss_pred             -----hhhHHHHHHHHHHHHHhccC---------ceeEEEEecc--------cHH-------HHHHHHHHHHCCcEEee-
Q psy11784        184 -----LDDNRPSGKYLVRPLGINLH---------IFWCLILLSI--------TYY-------LYRYTRRMKEAKIIVAN-  233 (284)
Q Consensus       184 -----l~~~~~~~~~l~~~L~~~~G---------~~~~i~~~~~--------~~~-------~~~~~~~l~~~Gv~~~~-  233 (284)
                           .++..++++++.+.|+++.|         ..+.+...+.        ...       ...+.+.+.++|++... 
T Consensus       398 g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~  477 (515)
T 2jis_A          398 GLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGY  477 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence                 23566677788888876511         1223322221        011       12367788888976532 


Q ss_pred             c--CCCCCEEEEEc-CCCCCHHHHHHHHHHHHHHHHH
Q psy11784        234 E--GEYGNVLLFLP-AMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       234 ~--~~~~~~lr~~p-~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      .  ....+.+|+++ +...|++||++++++|++++++
T Consensus       478 ~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          478 QPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             EEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             EEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            1  11136899999 8889999999999999887643

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.61  E-value=1.5e-14  Score=137.81  Aligned_cols=187  Identities=12%  Similarity=0.077  Sum_probs=123.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHH-HhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIH-EIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .++|++.+.   +++.+|++...++..|. .++.+.+++|.++|+ +||+++|+||+|.+|...+. .......+....+
T Consensus       234 ~~~l~~~l~---~~~k~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~i~~  308 (533)
T 3f6t_A          234 PNEIEKLKD---PSIKALIVVNPTNPTSK-EFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK-SIYSVVPYNTMLV  308 (533)
T ss_dssp             HHHHHHHSC---TTEEEEEEESSCTTTCB-CCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC-CHHHHSGGGEEEE
T ss_pred             HHHHHHHhC---CCCeEEEEeCCCCCCcc-ccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc-CHhhcCCCCEEEE
Confidence            567777664   46777777655666675 458888999999999 69999999999998865433 1222222334556


Q ss_pred             EEeccccc-CCcceeEEEecHH-----HHHhc--------------------------------hh--------------
Q psy11784        156 ITVGKPMG-NGMPIGAVITSRK-----IAESL--------------------------------NC--------------  183 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~~~~-----i~~~~--------------------------------~~--------------  183 (284)
                      .+|||.+| .|+++|+++++++     +++.+                                ..              
T Consensus       309 ~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q  388 (533)
T 3f6t_A          309 YSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQ  388 (533)
T ss_dssp             EESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHH
T ss_pred             ecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHH
Confidence            68999998 6899999999876     43322                                00              


Q ss_pred             ----------h-----------------hhHHHHHHHHHHHHHhc--------cCceeEEEEecc-----c---------
Q psy11784        184 ----------L-----------------DDNRPSGKYLVRPLGIN--------LHIFWCLILLSI-----T---------  214 (284)
Q Consensus       184 ----------l-----------------~~~~~~~~~l~~~L~~~--------~G~~~~i~~~~~-----~---------  214 (284)
                                +                 ++++++.+++.+.|. +        .|++..+++...     .         
T Consensus       389 ~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~  467 (533)
T 3f6t_A          389 IMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTN  467 (533)
T ss_dssp             HHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhc
Confidence                      1                 123333444444443 2        344555554210     0         


Q ss_pred             -HHHHHHHHHHH-HCCcEEeecCC---CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        215 -YYLYRYTRRMK-EAKIIVANEGE---YGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       215 -~~~~~~~~~l~-~~Gv~~~~~~~---~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                       ....+++..++ ++||++.|+..   ..+++|++.. .++++++++++++|.++++++.+
T Consensus       468 ~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~~  527 (533)
T 3f6t_A          468 NFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKEYYE  527 (533)
T ss_dssp             HCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHHH
Confidence             12335555555 78999987643   2478999753 36999999999999999988754

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.61  E-value=2.4e-14  Score=130.31  Aligned_cols=228  Identities=13%  Similarity=0.093  Sum_probs=144.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++..+ .....+|++...+|++....+.. .+..          +..+|....   .+..|        .+++
T Consensus        64 t~al~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~-~g~~----------~~~v~~~~~---~~~~d--------~~~l  120 (393)
T 1mdo_A           64 TAGMHIALMALG-IGEGDEVITPSMTWVSTLNMIVL-LGAN----------PVMVDVDRD---TLMVT--------PEHI  120 (393)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEESSSCHHHHHHHHH-TTCE----------EEEECBCTT---TCCBC--------HHHH
T ss_pred             HHHHHHHHHHcC-CCCCCEEEeCCCccHhHHHHHHH-CCCE----------EEEEeccCC---cCCCC--------HHHH
Confidence            367777777653 22345788888888886543322 1111          112232110   01111        5777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcEEEec
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      ++.++   +++++|++.+..   |...+    +++|.++|++||+++|+||+|+ |+...|. .     .+. +|++++|
T Consensus       121 ~~~l~---~~~~~v~~~~~~---G~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~-----~~~-~d~~~~S  183 (393)
T 1mdo_A          121 EAAIT---PQTKAIIPVHYA---GAPAD----LDAIYALGERYGIPVIEDAAHATGTSYKGR-H-----IGA-RGTAIFS  183 (393)
T ss_dssp             HHHCC---TTEEEECCBCGG---GCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTE-E-----TTS-SSEEEEE
T ss_pred             HHhcC---CCceEEEEeCCC---CCcCC----HHHHHHHHHHcCCeEEEECccccCCeECCe-e-----cCC-CCeEEEe
Confidence            77765   368888887744   44443    9999999999999999999998 4433343 1     223 8998877


Q ss_pred             ----ccccCCcceeEEEec-HHHHHhchh---------------------------------------------------
Q psy11784        160 ----KPMGNGMPIGAVITS-RKIAESLNC---------------------------------------------------  183 (284)
Q Consensus       160 ----K~l~~G~p~gav~~~-~~i~~~~~~---------------------------------------------------  183 (284)
                          |++++| ..|+++++ +++++.+..                                                   
T Consensus       184 ~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~  262 (393)
T 1mdo_A          184 FHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDAL  262 (393)
T ss_dssp             CCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHH
T ss_pred             CCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHH
Confidence                999876 67888886 666543210                                                   


Q ss_pred             hhhHHHHHHHHHHHHHhc----c----------CceeEEEEecc--cHHHHHHHHHHHHCCcEEeecCCC----------
Q psy11784        184 LDDNRPSGKYLVRPLGIN----L----------HIFWCLILLSI--TYYLYRYTRRMKEAKIIVANEGEY----------  237 (284)
Q Consensus       184 l~~~~~~~~~l~~~L~~~----~----------G~~~~i~~~~~--~~~~~~~~~~l~~~Gv~~~~~~~~----------  237 (284)
                      .++.+++.+++.+.|+++    .          +.++++.+.+.  .....++.+.|.++||.+.++...          
T Consensus       263 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~  342 (393)
T 1mdo_A          263 NARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRER  342 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhcc
Confidence            224445566677777663    0          11344444210  234678999999999999864311          


Q ss_pred             -------------CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        238 -------------GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       238 -------------~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                                   .+.+|+.+...+|++|+++++++|+++++...
T Consensus       343 ~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~  387 (393)
T 1mdo_A          343 FPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQGS  387 (393)
T ss_dssp             STTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred             CCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence                         23799988888999999999999998876553

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.60  E-value=1.1e-14  Score=134.89  Aligned_cols=135  Identities=18%  Similarity=0.072  Sum_probs=96.4

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEc-cCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVI-PFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      ++|++.|++..  ......||+...+||+..........   .  .+  ..+.++ +.        .+         .++
T Consensus        83 t~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~---~--~g--~~~~~~~~~--------~d---------~~~  136 (421)
T 2ctz_A           83 HAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLK---R--LG--IEVRFTSRE--------ER---------PEE  136 (421)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHH---H--TT--CEEEECCTT--------CC---------HHH
T ss_pred             HHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHH---H--cC--CEEEEECCC--------CC---------HHH
Confidence            36788888865  34557899999999997655422100   0  00  011223 21        11         677


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE--E
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII--T  157 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv--~  157 (284)
                      +++.++   +++++|++|++++..|.+.+    +++|.++|++||+++|+||+|+++|..+. .+     +..+|++  +
T Consensus       137 l~~~i~---~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~g~~~~-~~-----~~~~Di~~~s  203 (421)
T 2ctz_A          137 FLALTD---EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGMGGYLLR-PL-----AWGAALVTHS  203 (421)
T ss_dssp             HHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGGGTSCC-GG-----GGTCSEEEEE
T ss_pred             HHHhhc---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccccCC-cc-----ccCCeEEEEC
Confidence            777775   46899999999999998877    99999999999999999999976766554 22     2348988  7


Q ss_pred             ecccccC-CcceeEEEec
Q psy11784        158 VGKPMGN-GMPIGAVITS  174 (284)
Q Consensus       158 ~sK~l~~-G~p~gav~~~  174 (284)
                      ++|++++ |.++|+++++
T Consensus       204 ~~K~l~~~g~~~G~~~~~  221 (421)
T 2ctz_A          204 LTKWVGGHGAVIAGAIVD  221 (421)
T ss_dssp             TTTTTTCSSCCCCEEEEE
T ss_pred             CcccccCCCCcEEEEEEe
Confidence            8899997 6788877774

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.60  E-value=1.1e-14  Score=133.97  Aligned_cols=174  Identities=11%  Similarity=0.049  Sum_probs=113.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++   +++++|++|++++..|.+.+    +++|+++|++||++||+||+|+.. ...    ....+|..+.+.
T Consensus       142 ~~~l~~~i~---~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~~-~~~----~~~~~g~div~~  209 (400)
T 3nmy_A          142 PAAFKAAIR---ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFASP-MLQ----RPLSLGADLVVH  209 (400)
T ss_dssp             HHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHH-HHC----CGGGGTCSEEEE
T ss_pred             HHHHHHHhc---cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccc-ccC----ChhhcCCcEEEe
Confidence            677777764   56899999999999998886    999999999999999999999621 111    112234444445


Q ss_pred             EecccccCC-cceeE--EEe-cHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        157 TVGKPMGNG-MPIGA--VIT-SRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       157 ~~sK~l~~G-~p~ga--v~~-~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                      +++|.++|+ .++|+  ++. ++++++.+..                           +++..++.+++.+.|++.    
T Consensus       210 S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~  289 (400)
T 3nmy_A          210 SATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIE  289 (400)
T ss_dssp             ETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred             cCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEe
Confidence            689999974 66655  443 6677666543                           234455666677776653    


Q ss_pred             ----------------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeec-------------------------
Q psy11784        202 ----------------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANE-------------------------  234 (284)
Q Consensus       202 ----------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~-------------------------  234 (284)
                                            .|.|+++++.+..+.+.++.+.+.-.++.+..+                         
T Consensus       290 ~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~  369 (400)
T 3nmy_A          290 KVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQL  369 (400)
T ss_dssp             EEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHH
T ss_pred             EEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhc
Confidence                                  378999999533345666777665333222211                         


Q ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        235 GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       235 ~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +...+.+|++..+-    +.+.+++.|+++++
T Consensus       370 gi~~~liRlsvGle----~~~dli~dl~~al~  397 (400)
T 3nmy_A          370 GISDALVRLSVGIE----DLGDLRGDLERALV  397 (400)
T ss_dssp             TCCTTEEEEECCSS----CHHHHHHHHHHHHC
T ss_pred             CCCcCeEEEEeCcC----CHHHHHHHHHHHHh
Confidence            11246788865554    45555566666654

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.59  E-value=9.9e-14  Score=129.23  Aligned_cols=236  Identities=11%  Similarity=0.116  Sum_probs=144.0

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhc---CCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLD---ISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      ++|++.+..+...+.....|++..-+|++....+..   ..+..          +..+|..+.- ..+.-|        +
T Consensus       129 t~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~----------v~~~~~~~~~-~~~~~d--------~  189 (448)
T 3meb_A          129 TGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVP----------YKEYTYLRKD-GELEID--------F  189 (448)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSC----------CEEECCBCTT-SCSSBC--------H
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCe----------EEEEeccccc-cCCCcC--------H
Confidence            356777666666555556788888888775443330   11111          1122321110 011112        6


Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC--cccccccc-CCCCc
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS--HFWAFQTQ-GAVPD  154 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~--~~~a~~~~-g~~pD  154 (284)
                      +.+++.++..+.+...+++...++..|. .++.+.+++|.++|++||+++|+||+|.+|+..+.  ..+....+ +..++
T Consensus       190 e~l~~~l~~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~  268 (448)
T 3meb_A          190 SNTKKDIQSAPEKSIFLFHACAHNPSGI-DFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVE  268 (448)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCcEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCc
Confidence            7888888755445666666655776776 46888999999999999999999999999875441  01222221 23345


Q ss_pred             ---EEEeccccc-CCcceeEE--Ee--------c-H----HHHHhchh--------------------h-----------
Q psy11784        155 ---IITVGKPMG-NGMPIGAV--IT--------S-R----KIAESLNC--------------------L-----------  184 (284)
Q Consensus       155 ---iv~~sK~l~-~G~p~gav--~~--------~-~----~i~~~~~~--------------------l-----------  184 (284)
                         +.++||.++ .|+++|++  ++        + +    ++.+.+..                    +           
T Consensus       269 ~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~  348 (448)
T 3meb_A          269 VLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYD  348 (448)
T ss_dssp             EEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             EEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHH
Confidence               457899998 58999998  66        3 4    45444332                    1           


Q ss_pred             ------hhHHHHHHHHHHHHHhc--cC---------------ceeEEEEecccHHHHHHHHHH-HHCCcEEeecCCCCCE
Q psy11784        185 ------DDNRPSGKYLVRPLGIN--LH---------------IFWCLILLSITYYLYRYTRRM-KEAKIIVANEGEYGNV  240 (284)
Q Consensus       185 ------~~~~~~~~~l~~~L~~~--~G---------------~~~~i~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~~~  240 (284)
                            ++++++.+++.+.|+++  .|               ++..+.+      ..+++..+ .++||++.++.     
T Consensus       349 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~ll~~~gV~v~~G~-----  417 (448)
T 3meb_A          349 NVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGL------TPEHVDYLKEKWSIYLVKAG-----  417 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCC------CHHHHHHHHHHHCEEECSGG-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCC------CHHHHHHHHHhCCEEEeCCC-----
Confidence                  13445566666666653  11               1222222      13455555 46799998743     


Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        241 LLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       241 lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      .|++.. .+++++|++++++|.++++++
T Consensus       418 gRis~a-~~~~~~i~~~~~~l~~~l~~~  444 (448)
T 3meb_A          418 GRMSMC-GLTESNCDYVAEAIHDAVTKL  444 (448)
T ss_dssp             GEEEGG-GCCTTTHHHHHHHHHHHHHHS
T ss_pred             cEEEEe-cCCHHHHHHHHHHHHHHHHhc
Confidence            277653 347888999999999998743

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.58  E-value=3.7e-13  Score=127.17  Aligned_cols=187  Identities=13%  Similarity=0.086  Sum_probs=125.6

Q ss_pred             HHHHHHHHHhc---CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEAH---RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .++|++.++..   +..+++|++.......|.+.+    +++|.++|++||+++++|++|.|+..... .+.....++ .
T Consensus       229 ~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~~lhvD~a~~~~~~~~~-~~~~~~~g~~~  303 (504)
T 2okj_A          229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSR-KHRHKLNGIER  303 (504)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGGGGTTGGG
T ss_pred             HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEehhhhhHHHhCH-hhHhhcCCccc
Confidence            67788887632   224788888776777787766    99999999999999999999987643222 122223344 5


Q ss_pred             CcEEEec--ccccCCcceeEEEecH-HHHHh--------ch------------------------h--------------
Q psy11784        153 PDIITVG--KPMGNGMPIGAVITSR-KIAES--------LN------------------------C--------------  183 (284)
Q Consensus       153 pDiv~~s--K~l~~G~p~gav~~~~-~i~~~--------~~------------------------~--------------  183 (284)
                      +|+++++  |.+++++++|++++++ ++++.        +.                        .              
T Consensus       304 ~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g  383 (504)
T 2okj_A          304 ANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVG  383 (504)
T ss_dssp             CSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHH
Confidence            8999886  9988778899999976 45431        10                        0              


Q ss_pred             ----hhhHHHHHHHHHHHHHhccC-----------ceeEEEEeccc---------------HHHHHHHHHHHHCCcEE-e
Q psy11784        184 ----LDDNRPSGKYLVRPLGINLH-----------IFWCLILLSIT---------------YYLYRYTRRMKEAKIIV-A  232 (284)
Q Consensus       184 ----l~~~~~~~~~l~~~L~~~~G-----------~~~~i~~~~~~---------------~~~~~~~~~l~~~Gv~~-~  232 (284)
                          +++..++++++.+.|++..|           .++.+...+..               .....+.+.|.++|+++ .
T Consensus       384 ~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~  463 (504)
T 2okj_A          384 FENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG  463 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEE
Confidence                23556677778888876411           12233332211               11457888999999643 3


Q ss_pred             ecCCCC--CEEEEEcC-CCCCHHHHHHHHHHHHHHHHHH
Q psy11784        233 NEGEYG--NVLLFLPA-MCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       233 ~~~~~~--~~lr~~p~-l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +....+  +++|+++. ..+|++||++++++|+++++++
T Consensus       464 ~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          464 YQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             EEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             eeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            222222  58999984 7789999999999998887543

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.58  E-value=6e-14  Score=131.56  Aligned_cols=172  Identities=12%  Similarity=0.119  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.+.   +++++|++++.++..|.+.+    +++|.++|++||+++|+||+|+. |....   ..+   ..+|++
T Consensus       207 ~~~l~~~i~---~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~~~-g~~~~---~~~---~~~div  272 (464)
T 1ibj_A          207 LDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS-PVLSR---PLE---LGADIV  272 (464)
T ss_dssp             HHHHHHHCC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC-TTTCC---GGG---TTCSEE
T ss_pred             HHHHHHHhc---cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc-cccCC---hhh---cCCEEE
Confidence            577777764   56899999999999898876    99999999999999999999973 21111   112   346877


Q ss_pred             --EecccccC--CcceeEEEecH-HHHHhchh--------------------hh----hH---HHHHHHHHHHHHh----
Q psy11784        157 --TVGKPMGN--GMPIGAVITSR-KIAESLNC--------------------LD----DN---RPSGKYLVRPLGI----  200 (284)
Q Consensus       157 --~~sK~l~~--G~p~gav~~~~-~i~~~~~~--------------------l~----~~---~~~~~~l~~~L~~----  200 (284)
                        +++|.+++  |+++|++++++ ++++.+..                    ++    ++   .+....+.+.|++    
T Consensus       273 ~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v  352 (464)
T 1ibj_A          273 MHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRV  352 (464)
T ss_dssp             EEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             EECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence              58899986  78999999984 77665433                    10    01   1111222222221    


Q ss_pred             ----------c------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-----------------------
Q psy11784        201 ----------N------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-----------------------  235 (284)
Q Consensus       201 ----------~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------  235 (284)
                                +            .|.++++++. .......+.+.|...|+.+..+.                       
T Consensus       353 ~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~  431 (464)
T 1ibj_A          353 KKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-SVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREA  431 (464)
T ss_dssp             CEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-CHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSS
T ss_pred             eEEECCCCCCCcchHHHhccCCCCceEEEEEEC-CHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHh
Confidence                      0            2457777773 22234567788777777776543                       


Q ss_pred             --CCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        236 --EYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       236 --~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                        ...+.+|+++++    +++++++++|++++++
T Consensus       432 ~g~~~~~iRlsvg~----edi~~li~~L~~al~~  461 (464)
T 1ibj_A          432 RGLTEDLVRISAGI----EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             SSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred             cCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence              113689999887    8999999999998764

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.57  E-value=1.5e-13  Score=126.78  Aligned_cols=226  Identities=13%  Similarity=0.082  Sum_probs=141.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++..+  .| .+|++...+||+....+... +..          +..+|...   ..+.-|        .++|
T Consensus        77 t~al~~~l~~l~--~g-d~Vlv~~~~~~~~~~~~~~~-G~~----------~~~v~~~~---~~~~~d--------~~~l  131 (424)
T 2po3_A           77 TAGLQLLAHAAG--LT-GEVIMPSMTFAATPHALRWI-GLT----------PVFADIDP---DTGNLD--------PDQV  131 (424)
T ss_dssp             HHHHHHHHHHHT--CC-SEEEEESSSCTHHHHHHHHT-TCE----------EEEECBCT---TTSSBC--------HHHH
T ss_pred             HHHHHHHHHHcC--CC-CEEEECCCccHHHHHHHHHc-CCE----------EEEEecCC---CcCCcC--------HHHH
Confidence            467888888764  34 67899999999876543321 111          11222211   011111        5666


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcEEEec
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      ++.++   +++++|++.+   ..|...    .+++|.++|++||+++|+||+|+ |+...|. .     .+..+|++++|
T Consensus       132 ~~~i~---~~~~~v~~~~---~tG~~~----~l~~i~~la~~~~~~li~Dea~~~g~~~~~~-~-----~~~~~di~~~S  195 (424)
T 2po3_A          132 AAAVT---PRTSAVVGVH---LWGRPC----AADQLRKVADEHGLRLYFDAAHALGCAVDGR-P-----AGSLGDAEVFS  195 (424)
T ss_dssp             GGGCC---TTEEEEEEEC---GGGCCC----CHHHHHHHHHHTTCEEEEECTTCTTCEETTE-E-----TTSSSSEEEEE
T ss_pred             HHhhC---cCCcEEEEEC---CCCCcC----CHHHHHHHHHHcCCEEEEECccccCCeECCe-e-----cccccCEEEEe
Confidence            66554   3577777643   244433    49999999999999999999999 7765453 1     12236887666


Q ss_pred             ----ccccCCcceeEEEec-HHHHHhchh---------------------------------------hhhHHHHHHHHH
Q psy11784        160 ----KPMGNGMPIGAVITS-RKIAESLNC---------------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       160 ----K~l~~G~p~gav~~~-~~i~~~~~~---------------------------------------l~~~~~~~~~l~  195 (284)
                          |++++ .++|+++++ +++++.+..                                       .++.+++.+++.
T Consensus       196 ~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~  274 (424)
T 2po3_A          196 FHATKAVNA-FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYR  274 (424)
T ss_dssp             CCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                98887 588999998 777554321                                       123344445555


Q ss_pred             HHHHhc---------cC-----ceeEEEEecc---cHHHHHHHHHHHHCCcEEeecCC-C---------------CC---
Q psy11784        196 RPLGIN---------LH-----IFWCLILLSI---TYYLYRYTRRMKEAKIIVANEGE-Y---------------GN---  239 (284)
Q Consensus       196 ~~L~~~---------~G-----~~~~i~~~~~---~~~~~~~~~~l~~~Gv~~~~~~~-~---------------~~---  239 (284)
                      +.|+++         .|     .++.+.+ +.   .....++.+.|.++||.+.+... .               .+   
T Consensus       275 ~~L~~~~g~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r  353 (424)
T 2po3_A          275 EHLADLPGVLVADHDRHGLNNHQYVIVEI-DEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTER  353 (424)
T ss_dssp             HHTCSCTTEEECCGGGGSCCCCCCEEEEE-CHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHH
T ss_pred             HHhccCCCccccCCCCCCccccEEEEEEE-CCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHH
Confidence            565542         11     2334444 21   12467788899999999976211 0               01   


Q ss_pred             ----EEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        240 ----VLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       240 ----~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                          .+|+.....+|++|+++++++|.++++...
T Consensus       354 ~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~  387 (424)
T 2po3_A          354 LAARVLSLPTGTAIGDDDIRRVADLLRLCATRGR  387 (424)
T ss_dssp             HHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence                166655588999999999999999987653

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.57  E-value=1.1e-13  Score=124.77  Aligned_cols=228  Identities=13%  Similarity=0.154  Sum_probs=141.1

Q ss_pred             CcHHHHHHHHHHH-ccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARA-YTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~-~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      ++|++.|++..+. .....+|+....+||+....+... +..          +.++|....  .  .-|        .++
T Consensus        57 t~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~----------~~~~~~~~~--~--~~d--------~~~  113 (375)
T 2fnu_A           57 TSALLTLYRNFSEFSADRNEIITTPISFVATANMLLES-GYT----------PVFAGIKND--G--NID--------ELA  113 (375)
T ss_dssp             HHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHT-TCE----------EEECCBCTT--S--SBC--------GGG
T ss_pred             HHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHC-CCE----------EEEeccCCC--C--CCC--------HHH
Confidence            3677788877642 223357888888888865543321 111          112222110  0  011        345


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE--E
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII--T  157 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv--~  157 (284)
                      +++.+.   +++++|++...   .|...+    +++|.++|++||+++|+||+|+. |....    ....+..+|++  +
T Consensus       114 l~~~i~---~~~~~v~~~~~---tG~~~~----l~~i~~l~~~~~~~li~D~a~~~-~~~~~----~~~~~~~~~i~~~s  178 (375)
T 2fnu_A          114 LEKLIN---ERTKAIVSVDY---AGKSVE----VESVQKLCKKHSLSFLSDSSHAL-GSEYQ----NKKVGGFALASVFS  178 (375)
T ss_dssp             SGGGCC---TTEEEEEEECG---GGCCCC----HHHHHHHHHHHTCEEEEECTTCT-TCEET----TEETTSSSSEEEEE
T ss_pred             HHhhcC---cCceEEEEeCC---cCCccC----HHHHHHHHHHcCCEEEEECcccc-CCeEC----CeeccccCCeEEEe
Confidence            555543   35676554433   566655    89999999999999999999973 32211    12233334554  6


Q ss_pred             ec--ccccCCcceeEEEec--HHHHHhch------------------------h-------------------hhhHHHH
Q psy11784        158 VG--KPMGNGMPIGAVITS--RKIAESLN------------------------C-------------------LDDNRPS  190 (284)
Q Consensus       158 ~s--K~l~~G~p~gav~~~--~~i~~~~~------------------------~-------------------l~~~~~~  190 (284)
                      ++  |.++.|  +|+++++  +++++.+.                        .                   .++.+++
T Consensus       179 ~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  256 (375)
T 2fnu_A          179 FHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEA  256 (375)
T ss_dssp             CCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             CCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77  999654  6777774  55643210                        0                   2356677


Q ss_pred             HHHHHHHHHhc-------c-------CceeEEEEecccH-HHHHHHHHHHHCCcEEeecC-C------C-----------
Q psy11784        191 GKYLVRPLGIN-------L-------HIFWCLILLSITY-YLYRYTRRMKEAKIIVANEG-E------Y-----------  237 (284)
Q Consensus       191 ~~~l~~~L~~~-------~-------G~~~~i~~~~~~~-~~~~~~~~l~~~Gv~~~~~~-~------~-----------  237 (284)
                      .+++.+.|+++       .       +.++.+.+..... ....+.+.|.++||.+.... +      +           
T Consensus       257 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~  336 (375)
T 2fnu_A          257 ALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKS  336 (375)
T ss_dssp             HHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHH
T ss_pred             HHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChH
Confidence            78888888764       1       1123455532112 57789999999999987210 0      0           


Q ss_pred             -----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        238 -----GNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       238 -----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                           .+.+|+.++..+|++|+++++++|+++++++
T Consensus       337 ~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  372 (375)
T 2fnu_A          337 AEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF  372 (375)
T ss_dssp             HHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                 1579999988899999999999999988764

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.56  E-value=5.9e-15  Score=134.51  Aligned_cols=228  Identities=15%  Similarity=0.124  Sum_probs=125.7

Q ss_pred             CcHHHHHHHHHHHcc--CCc-cEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYT--GRQ-NIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~--~r~-~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      ++|++.+++....++  ... .|+.....|++.......+.....        .+..+|....    +.-|        .
T Consensus        90 t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~--------~~~~v~~~~~----~~~d--------~  149 (400)
T 3vax_A           90 TESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGF--------EVDFLTPGPS----GRIS--------V  149 (400)
T ss_dssp             HHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTC--------EEEEECCCTT----CCCC--------H
T ss_pred             HHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCC--------eEEEEccCCC----CCcC--------H
Confidence            367777777765321  223 677776667665433322210000        1222333211    1111        5


Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT  157 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~  157 (284)
                      ++|++.+.   +++++|+++++++..|...+    +++|.++|++||+++|+||+|+ +|...     ...... +|+++
T Consensus       150 ~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~-----~~~~~~-~d~~~  215 (400)
T 3vax_A          150 EGVMERLR---PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP-----GDLTTP-IDMIS  215 (400)
T ss_dssp             HHHHTTCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG-----GGGGSC-CSEEE
T ss_pred             HHHHHhcC---CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC-----cChhhc-CcEEE
Confidence            66766654   46899999999999998877    8999999999999999999997 33221     122234 89887


Q ss_pred             ec--ccccCCcceeEEE-ecH--------HHHHhch---------h-------------------------hhhHHHHHH
Q psy11784        158 VG--KPMGNGMPIGAVI-TSR--------KIAESLN---------C-------------------------LDDNRPSGK  192 (284)
Q Consensus       158 ~s--K~l~~G~p~gav~-~~~--------~i~~~~~---------~-------------------------l~~~~~~~~  192 (284)
                      +|  | +.|+.++|+++ +++        .+...+.         .                         .++.+++.+
T Consensus       216 ~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  294 (400)
T 3vax_A          216 ISGHK-IGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRS  294 (400)
T ss_dssp             EETGG-GTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             EeHHH-hCCCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            65  9 44434578888 765        1111110         0                         235566677


Q ss_pred             HHHHHHHhcc------------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCC---------------------CCC
Q psy11784        193 YLVRPLGINL------------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE---------------------YGN  239 (284)
Q Consensus       193 ~l~~~L~~~~------------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------~~~  239 (284)
                      ++.+.|+ ..            +.++.+.+.  .....++.+.|. +||.+.++..                     ..+
T Consensus       295 ~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (400)
T 3vax_A          295 RLLAGLA-STSFQVNGDQDHVVPHILNLSFE--DVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASK  370 (400)
T ss_dssp             HHHHHHT-TTTCEECSCTTSBCTTEEEEECT--TCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTS
T ss_pred             HHHHhhC-CCCEEEeCCcccCCCCEEEEEeC--CCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCc
Confidence            7777776 31            234444442  234677889999 9998876421                     038


Q ss_pred             EEEEEc-CCCCCHHHHHHHHHHHHHHHHH
Q psy11784        240 VLLFLP-AMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       240 ~lr~~p-~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      .+|+.+ +...|++++++++++|++++++
T Consensus       371 ~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          371 SLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             EEEEEEEEC--------------------
T ss_pred             eEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence            999999 8899999999999999887753

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.56  E-value=5.5e-13  Score=121.92  Aligned_cols=231  Identities=13%  Similarity=0.127  Sum_probs=143.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      ++|++.+++..+. ....+|+....+||+....+.... ..          +.++|..+    .+.-|        .+++
T Consensus        57 t~al~~~~~~l~~-~~gd~Vl~~~~~~~~~~~~~~~~g-~~----------~~~v~~~~----~~~~d--------~~~l  112 (394)
T 1o69_A           57 TAALHLALRVAGV-KQDDIVLASSFTFIASVAPICYLK-AK----------PVFIDCDE----TYNID--------VDLL  112 (394)
T ss_dssp             HHHHHHHHHHTTC-CTTCEEEEESSSCGGGTHHHHHTT-CE----------EEEECBCT----TSSBC--------HHHH
T ss_pred             HHHHHHHHHHcCC-CCCCEEEECCCccHHHHHHHHHcC-CE----------EEEEEeCC----CCCcC--------HHHH
Confidence            3567777766532 233568888888887655443211 10          11223221    11111        6788


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcEEEe-
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDIITV-  158 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDiv~~-  158 (284)
                      ++.++..++++++|++++..   |..    ..+++|.++|++||+++|+||+|+ |+...|. ...  .++ ..|+.++ 
T Consensus       113 ~~~i~~~~~~~~~v~~~~~~---G~~----~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~--~~~-~~~~~s~s  181 (394)
T 1o69_A          113 KLAIKECEKKPKALILTHLY---GNA----AKMDEIVEICKENDIVLIEDAAEALGSFYKNK-ALG--TFG-EFGVYSYN  181 (394)
T ss_dssp             HHHHHHCSSCCCEEEEECGG---GCC----CCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-ETT--SSS-SEEEEECC
T ss_pred             HHHHhcccCCceEEEEECCC---CCh----hhHHHHHHHHHHcCCEEEEECcCcccceeCCc-ccc--ccc-CcEEEEEe
Confidence            88887433357888888843   333    449999999999999999999998 7644443 111  111 3688888 


Q ss_pred             -cccccCCcceeEEEec-HHHHHhchh-----------------------------------------hhhHHHHHHHHH
Q psy11784        159 -GKPMGNGMPIGAVITS-RKIAESLNC-----------------------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       159 -sK~l~~G~p~gav~~~-~~i~~~~~~-----------------------------------------l~~~~~~~~~l~  195 (284)
                       +|++++ ..+|+++++ +++++.+..                                         +++.+++.+++.
T Consensus       182 ~~K~l~~-~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~  260 (394)
T 1o69_A          182 GNKIITT-SGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYK  260 (394)
T ss_dssp             TTSSSCC-SSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CCccCCC-CCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             588874 478999995 776554311                                         235566777777


Q ss_pred             HHHHhc---c-------Cc--eeEEEEecc--------------------cHHHHHHHHHHHHCCcEEeecCC-------
Q psy11784        196 RPLGIN---L-------HI--FWCLILLSI--------------------TYYLYRYTRRMKEAKIIVANEGE-------  236 (284)
Q Consensus       196 ~~L~~~---~-------G~--~~~i~~~~~--------------------~~~~~~~~~~l~~~Gv~~~~~~~-------  236 (284)
                      +.|+++   .       +.  ++.+.+.+.                    ......+.+.|.++||.++++..       
T Consensus       261 ~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~  340 (394)
T 1o69_A          261 EFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEV  340 (394)
T ss_dssp             HHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGG
T ss_pred             HHhcccccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchh
Confidence            777652   1       12  234444211                    12567899999999999986521       


Q ss_pred             CC---------------CEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        237 YG---------------NVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       237 ~~---------------~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      ..               ..+++.....+|++|++.++++|+++++.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~  386 (394)
T 1o69_A          341 FKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA  386 (394)
T ss_dssp             GTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             hhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence            00               23444445668999999999999887643

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.56  E-value=1.8e-13  Score=123.60  Aligned_cols=233  Identities=15%  Similarity=0.111  Sum_probs=151.9

Q ss_pred             CcHHHHHHHHHHHc--cCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAY--TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~--~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      ++|++.+++..+.+  .....|++.+.+|++.......+.....        .+..+|...    ....|        .+
T Consensus        70 t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~--------~~~~v~~~~----~~~~d--------~~  129 (382)
T 4eb5_A           70 TEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGF--------EVEYIPVGK----YGEVD--------VS  129 (382)
T ss_dssp             HHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTC--------EEEEECBCT----TSCBC--------HH
T ss_pred             HHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCc--------EEEEeccCC----CCccC--------HH
Confidence            46888888887622  2335788888888876544332111100        112233221    11111        56


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      +|++.++   +++.+|+++..++..|...+    +++|.++|++||++ |+||+|+ +|...   +....+  .+|++++
T Consensus       130 ~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~---~~~~~~--~~di~~~  195 (382)
T 4eb5_A          130 FIDQKLR---DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE---VDVEKI--GADMLTI  195 (382)
T ss_dssp             HHHHHCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC---CCHHHH--TCSEEEE
T ss_pred             HHHHHhc---CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc---cCcccc--CCCEEEe
Confidence            7777664   35889999999999998876    89999999999999 9999997 54321   122222  4687754


Q ss_pred             --cccccCCcceeEEEecHHH-HHh-c------hh----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        159 --GKPMGNGMPIGAVITSRKI-AES-L------NC----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       159 --sK~l~~G~p~gav~~~~~i-~~~-~------~~----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                        +|.++. ..+|+++++++. +.. +      ..                            .++.+++.+++.+.|++
T Consensus       196 s~sK~~g~-~g~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~  274 (382)
T 4eb5_A          196 SSNDIYGP-KGVGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK  274 (382)
T ss_dssp             ETGGGTCC-SSCEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ehHHhcCC-CceEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence              697432 137888887663 111 0      00                            22455566777777765


Q ss_pred             c--------c----CceeEEEEecccHHHHHHHHHHHHCCcEEeecCC---------------------CCCEEEEEcCC
Q psy11784        201 N--------L----HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE---------------------YGNVLLFLPAM  247 (284)
Q Consensus       201 ~--------~----G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------~~~~lr~~p~l  247 (284)
                      +        .    +.++.+.+ + .....++.+.|.++||.+.++..                     ..+.+|+.++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~  352 (382)
T 4eb5_A          275 IEESYLNGHPEKRLPNNVNVRF-S-YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGR  352 (382)
T ss_dssp             STTEEECSCSSSBCTTEEEEEE-T-TSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCT
T ss_pred             CCCeEEeCCcccCCCCEEEEEe-C-CcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCC
Confidence            4        1    33455555 2 22466788999999999987531                     14689999888


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        248 CLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      .+|++++++++++|+++++++.+
T Consensus       353 ~~~~~~i~~~~~~l~~~~~~~~~  375 (382)
T 4eb5_A          353 YNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999988764

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.56  E-value=6.2e-13  Score=125.66  Aligned_cols=192  Identities=11%  Similarity=0.049  Sum_probs=126.2

Q ss_pred             HHHHHHHHHhcCC--CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC-cccccccc--CC
Q psy11784         77 AQAARNIMEAHRD--NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-HFWAFQTQ--GA  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~--~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~~a~~~~--g~  151 (284)
                      +++|++.++....  ++.+|++...++..|. +++.+.+++|.++|++||+++|+||+|..+...+. .+..+...  +.
T Consensus       220 ~~~le~~l~~~~~~~~~k~i~l~np~NPTG~-v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~  298 (498)
T 3ihj_A          220 VNELRRAVQEAKDHCDPKVLCIINPGNPTGQ-VQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEM  298 (498)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHT
T ss_pred             HHHHHHHHHhhhccCCCeEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHh
Confidence            6788888874322  4677776655666665 56888999999999999999999999987633221 11111110  11


Q ss_pred             C------Cc---EEEeccccc--CCcceeEEE---ecHHHHHhchh-------------------h--------------
Q psy11784        152 V------PD---IITVGKPMG--NGMPIGAVI---TSRKIAESLNC-------------------L--------------  184 (284)
Q Consensus       152 ~------pD---iv~~sK~l~--~G~p~gav~---~~~~i~~~~~~-------------------l--------------  184 (284)
                      .      ..   +.++||++.  .|+++|+++   .++++++.+..                   +              
T Consensus       299 ~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~  378 (498)
T 3ihj_A          299 GPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFS  378 (498)
T ss_dssp             CHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHH
T ss_pred             cccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHH
Confidence            1      11   237899995  699999998   58888776543                   1              


Q ss_pred             -------hhHHHHHHHHHHHHHhc---------cCceeEEEEe-ccc---------HHHHH--HHHHHHHCCcEEeecCC
Q psy11784        185 -------DDNRPSGKYLVRPLGIN---------LHIFWCLILL-SIT---------YYLYR--YTRRMKEAKIIVANEGE  236 (284)
Q Consensus       185 -------~~~~~~~~~l~~~L~~~---------~G~~~~i~~~-~~~---------~~~~~--~~~~l~~~Gv~~~~~~~  236 (284)
                             ++++++.+++.+.|+++         .|++.++.+. +..         .....  +.+.|.++||++.|+..
T Consensus       379 ~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~  458 (498)
T 3ihj_A          379 REKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSG  458 (498)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcc
Confidence                   12345556666666654         3444444442 111         01223  23445578999998754


Q ss_pred             C-----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        237 Y-----GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       237 ~-----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      +     .+++|++.  ..+++++++++++|.++++++.++
T Consensus       459 f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~~~~~~  496 (498)
T 3ihj_A          459 FGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHINFLEK  496 (498)
T ss_dssp             TCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3     34899976  589999999999999999887654

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.55  E-value=3.3e-13  Score=125.85  Aligned_cols=173  Identities=13%  Similarity=0.090  Sum_probs=120.9

Q ss_pred             HHHHHHHHHhcCCCe-eEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNI-ATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~v-aavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++++.++.   ++ ++|++|+..+..|.+.+    +++|.++|++||+++|+||+|+.+ ...      ......+|+
T Consensus       189 ~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~-~~~------~~~~~g~Di  254 (445)
T 1qgn_A          189 VGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP-LNQ------KALALGADL  254 (445)
T ss_dssp             HHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT-TTC------CTTTTTCSE
T ss_pred             HHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc-ccC------CccccCCEE
Confidence            6788888872   44 89999999999998877    999999999999999999999732 111      223456898


Q ss_pred             EE--ecccccCC--cceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        156 IT--VGKPMGNG--MPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       156 v~--~sK~l~~G--~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      ++  ++|.++++  .++|++++++++++.+..                           +++..++.+++.+.|++.   
T Consensus       255 v~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v  334 (445)
T 1qgn_A          255 VLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV  334 (445)
T ss_dssp             EEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             EEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            86  78999874  479999999988776543                           123344556666777553   


Q ss_pred             -----------------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-----------------------
Q psy11784        202 -----------------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-----------------------  235 (284)
Q Consensus       202 -----------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------  235 (284)
                                             .|.++++++......+..+...|...++.+..++                       
T Consensus       335 ~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~  414 (445)
T 1qgn_A          335 RHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAK  414 (445)
T ss_dssp             EEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHT
T ss_pred             eEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHh
Confidence                                   1556777774322346667776653344322211                       


Q ss_pred             --CCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        236 --EYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       236 --~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                        ...+.||++..    .||+|.+++.|+++++.
T Consensus       415 ~g~~~~~iRlSvG----~Edid~li~~L~~al~~  444 (445)
T 1qgn_A          415 YGIMDNLVRFSFG----VEDFDDLKADILQALDS  444 (445)
T ss_dssp             TTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence              12468999654    46899999999998864

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.55  E-value=6.8e-14  Score=127.47  Aligned_cols=223  Identities=14%  Similarity=0.153  Sum_probs=142.6

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      |+|++.|++.++. ....+|++...+||+....+..... .          +.++|...   ..+.-|        .+++
T Consensus        81 t~al~~~l~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~-~----------~~~~~~~~---~~~~~d--------~~~l  137 (391)
T 3dr4_A           81 TTALHLALVAMGI-GPGDEVIVPSLTYIASANSVTYCGA-T----------PVLVDNDP---RTFNLD--------AAKL  137 (391)
T ss_dssp             HHHHHHHHHHHTC-CTTCEEEEESSSCTHHHHHHHHTTC-E----------EEEECBCT---TTCSBC--------GGGS
T ss_pred             HHHHHHHHHHcCC-CCcCEEEECCCchHHHHHHHHHCCC-E----------EEEEecCc---cccCcC--------HHHH
Confidence            4688888887743 2346789999999987655443211 1          11222210   001111        3455


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcEEEec
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      ++.++   +++++|++..   ..|...+    +++|.++|++||+++|+||+|+ |....+      ...+..+|++++|
T Consensus       138 ~~~~~---~~~~~v~~~n---~tG~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~------~~~~~~~di~~~S  201 (391)
T 3dr4_A          138 EALIT---PRTKAIMPVH---LYGQICD----MDPILEVARRHNLLVIEDAAEAVGATYRG------KKSGSLGDCATFS  201 (391)
T ss_dssp             GGGCC---TTEEEECCBC---GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETT------EETTSSSSEEEEE
T ss_pred             HHhcC---CCceEEEEEC---CCCChhh----HHHHHHHHHHcCCEEEEECcccccceECC------eeecccCCEEEEE
Confidence            55443   4677887543   3454444    9999999999999999999997 221112      2334457888888


Q ss_pred             ----ccccCCcceeEEEec-HHHHHhchh-----------------------------------------hhhHHHHHHH
Q psy11784        160 ----KPMGNGMPIGAVITS-RKIAESLNC-----------------------------------------LDDNRPSGKY  193 (284)
Q Consensus       160 ----K~l~~G~p~gav~~~-~~i~~~~~~-----------------------------------------l~~~~~~~~~  193 (284)
                          |++++| ..|+++++ +++.+.+..                                         .++.+++.++
T Consensus       202 ~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~  280 (391)
T 3dr4_A          202 FFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGW  280 (391)
T ss_dssp             CBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                999875 46777775 445433210                                         2356667777


Q ss_pred             HHHHHHhccCc----------------eeEEEEecc--cHHHHHHHHHHHHCCcEEeecCC-------------------
Q psy11784        194 LVRPLGINLHI----------------FWCLILLSI--TYYLYRYTRRMKEAKIIVANEGE-------------------  236 (284)
Q Consensus       194 l~~~L~~~~G~----------------~~~i~~~~~--~~~~~~~~~~l~~~Gv~~~~~~~-------------------  236 (284)
                      +.+.|+++ |+                ++.+.+ +.  .....++.+.|.++||.+.++..                   
T Consensus       281 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~  358 (391)
T 3dr4_A          281 YEQKLARL-GNRVTKPHVALTGRHVFWMYTVRL-GEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIA  358 (391)
T ss_dssp             HHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEE-CSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHH
T ss_pred             HHHHhhcC-CccccCcCCCCCCcceeEEEEEEE-CCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHH
Confidence            88888764 22                223444 22  23467899999999999986520                   


Q ss_pred             ---CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        237 ---YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       237 ---~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                         ..+.+|+.++..+|++||++++++|++++
T Consensus       359 ~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          359 EACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             HHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence               12578999899999999999999997653

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.54  E-value=3.3e-13  Score=123.26  Aligned_cols=231  Identities=15%  Similarity=0.162  Sum_probs=138.7

Q ss_pred             CcHHHHHHHHHHHccC-CccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTG-RQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~-r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      +||+..+++..+.+.+ ...|+...-+|++....+.... ..          +..+|..+.  ..+.-|        ++.
T Consensus       106 ~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g-~~----------~~~~~~~~~--~~~~~d--------~~~  164 (401)
T 7aat_A          106 TGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAG-LQ----------LQAYRYYDP--KTCSLD--------FTG  164 (401)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTT-CE----------EEEEECEET--TTTEEC--------HHH
T ss_pred             hHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcC-Ce----------eEeeeeecc--ccCccC--------HHH
Confidence            3677777776665443 3567777777776544332221 11          111222110  001111        566


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC--ccccccc-cCCCCcE-
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS--HFWAFQT-QGAVPDI-  155 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~--~~~a~~~-~g~~pDi-  155 (284)
                      +++.+++..+++.++++...++..|. ..+.+.+++|.++|++||+++|+||+|.+|+..+.  ..+.... .+..+++ 
T Consensus       165 l~~~l~~~~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  243 (401)
T 7aat_A          165 AMEDISKIPEKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVV  243 (401)
T ss_dssp             HHHHHTTSCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCE
T ss_pred             HHHHHHhCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEE
Confidence            66667654456788888888887776 46889999999999999999999999998865431  0122221 1233443 


Q ss_pred             --EEeccccc-CCcceeEEEe---cHH----HHHhchh--------------------h-----------------hhHH
Q psy11784        156 --ITVGKPMG-NGMPIGAVIT---SRK----IAESLNC--------------------L-----------------DDNR  188 (284)
Q Consensus       156 --v~~sK~l~-~G~p~gav~~---~~~----i~~~~~~--------------------l-----------------~~~~  188 (284)
                        .++||.++ .|+++|++++   +++    +.+.+..                    +                 ++++
T Consensus       244 ~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  323 (401)
T 7aat_A          244 LSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRII  323 (401)
T ss_dssp             EEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence              57899998 6899999886   554    2222221                    1                 1344


Q ss_pred             HHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHH
Q psy11784        189 PSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       189 ~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~  256 (284)
                      ++.+++.+.|+++            .|++.++.+.     ...+...+.++||.+.++      +|++.+. +++++|++
T Consensus       324 ~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~gi~v~~~------~Ris~~~-~~~~~i~~  391 (401)
T 7aat_A          324 SMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----PEQVERLTKEFSIYMTKD------GRISVAG-VASSNVGY  391 (401)
T ss_dssp             HHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----HHHHHHHHHHHCEECCTT------CEEEGGG-CCTTTHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC-----HHHHHHHHHhCCEeccCC------CeEEecc-CChhhHHH
Confidence            4555666666553            2333333221     233333345779999742      5777653 46666999


Q ss_pred             HHHHHHHHH
Q psy11784        257 IVSTLNRIF  265 (284)
Q Consensus       257 ~~~~l~~~l  265 (284)
                      ++++|.+++
T Consensus       392 ~~~~l~~~~  400 (401)
T 7aat_A          392 LAHAIHQVT  400 (401)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998775

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.53  E-value=8.9e-14  Score=125.93  Aligned_cols=224  Identities=13%  Similarity=0.173  Sum_probs=134.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCC-CCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFP-DTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |+|++.|++..+.- ...+|++...+||+....+.... ..          +.+++.. +.    +.-|        .++
T Consensus        61 t~al~~~l~~l~~~-~gd~Vi~~~~~~~~~~~~~~~~g-~~----------~~~~~~~~~~----~~~d--------~~~  116 (373)
T 3frk_A           61 LDALHLILKGYDIG-FGDEVIVPSNTFIATALAVSYTG-AK----------PIFVEPDIRT----YNID--------PSL  116 (373)
T ss_dssp             HHHHHHHHHHTTCC-TTCEEEEETTSCTHHHHHHHHHS-CE----------EEEECEETTT----TEEC--------GGG
T ss_pred             HHHHHHHHHHcCCC-CcCEEEECCCCcHHHHHHHHHcC-CE----------EEEEeccccc----cCcC--------HHH
Confidence            36777777765322 34568888888887554432211 11          1112211 10    1101        345


Q ss_pred             HHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec
Q psy11784         80 ARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        80 l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      +++.+.   +++++|++   ....|...+    +++|.++|++||+++|+||+|+. |   . .+.....+..+|++++|
T Consensus       117 l~~~l~---~~~~~v~~---~n~~G~~~~----l~~i~~l~~~~~~~li~D~a~~~-g---~-~~~~~~~~~~~d~~~~S  181 (373)
T 3frk_A          117 IESAIT---EKTKAIIA---VHLYGQPAD----MDEIKRIAKKYNLKLIEDAAQAH-G---S-LYKGMKVGSLGDAAGFS  181 (373)
T ss_dssp             TGGGCC---TTEEEEEE---ECCTTCCCC----HHHHHHHHHHHTCEEEEECTTCT-T---C-EETTEETTSSSSEEEEE
T ss_pred             HHHhcC---CCCeEEEE---ECCCcCccc----HHHHHHHHHHcCCEEEEECCccc-C---C-EECCEeccccccEEEEe
Confidence            555553   46777773   335666555    99999999999999999999972 1   1 12223455567999888


Q ss_pred             ----ccccC-CcceeEEEec-HHHHHhchh---------------------------------------hhhHHHHHHHH
Q psy11784        160 ----KPMGN-GMPIGAVITS-RKIAESLNC---------------------------------------LDDNRPSGKYL  194 (284)
Q Consensus       160 ----K~l~~-G~p~gav~~~-~~i~~~~~~---------------------------------------l~~~~~~~~~l  194 (284)
                          |++++ |. .|+++++ +++.+.+..                                       .++.+++.+++
T Consensus       182 ~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~  260 (373)
T 3frk_A          182 FYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKY  260 (373)
T ss_dssp             CCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                99987 64 6777775 445443221                                       12344455555


Q ss_pred             HHHHHhccCc------------eeEEEEecccHHHHHHHHHHHHCCcEEeecCCC-------------------------
Q psy11784        195 VRPLGINLHI------------FWCLILLSITYYLYRYTRRMKEAKIIVANEGEY-------------------------  237 (284)
Q Consensus       195 ~~~L~~~~G~------------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-------------------------  237 (284)
                      .+.|+++ ++            ++.+.+.  ......+.+.|.++||.+++..+.                         
T Consensus       261 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (373)
T 3frk_A          261 IAGINNP-NVIIPVEADYAKHVWYTFVIR--SEKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIA  337 (373)
T ss_dssp             HHHCCCT-TEECCCCCTTEECCCSSEEEE--ESSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHH
T ss_pred             HHHhccC-ceEeccCCCCCceeeEEEEEE--eCCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHH
Confidence            5555442 10            0111111  124678999999999999854310                         


Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        238 GNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       238 ~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      ...+|+.....+|++|||++++.|++...+
T Consensus       338 ~~~lrl~~~~~~t~~di~~~~~~l~~~~~~  367 (373)
T 3frk_A          338 NEILSIPIWYGMKNEEIEYVIDKINAWKLE  367 (373)
T ss_dssp             HHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred             hCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence            057999888899999999999999776543

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.53  E-value=9.8e-13  Score=120.99  Aligned_cols=173  Identities=13%  Similarity=0.116  Sum_probs=119.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHH-hCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE-IGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~-~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++++.++   +++++|++++.++..|.+.+    +++|.++|++ ||+++|+||+|+.+.. .. .+  + ++  .|+
T Consensus       137 ~~~l~~~i~---~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~-~~-~~--~-~~--~di  202 (404)
T 1e5e_A          137 PGEVKKHMK---PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI-TN-PV--D-FG--VDV  202 (404)
T ss_dssp             TTHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT-CC-GG--G-GT--CSE
T ss_pred             HHHHHHhcC---CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh-CC-cc--c-cC--CEE
Confidence            456666664   46899999999999998776    9999999999 9999999999996632 22 22  1 33  566


Q ss_pred             E--EecccccC-Ccce-eEEEecHHHHH-hchh---------------------hh-------hHHHHHHHHHHHHHhc-
Q psy11784        156 I--TVGKPMGN-GMPI-GAVITSRKIAE-SLNC---------------------LD-------DNRPSGKYLVRPLGIN-  201 (284)
Q Consensus       156 v--~~sK~l~~-G~p~-gav~~~~~i~~-~~~~---------------------l~-------~~~~~~~~l~~~L~~~-  201 (284)
                      +  +++|.+++ |.++ |++++++++++ .+..                     ++       +..++.+.+.+.|++. 
T Consensus       203 ~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~  282 (404)
T 1e5e_A          203 VVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHP  282 (404)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             EEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5  68999986 6887 99999998877 4422                     11       1233444444445432 


Q ss_pred             -------------------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC---------------------
Q psy11784        202 -------------------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG---------------------  235 (284)
Q Consensus       202 -------------------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------------------  235 (284)
                                               .|.++.+++. ..  .....+.+.+.||++....                     
T Consensus       283 ~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~-~~--~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~  359 (404)
T 1e5e_A          283 AVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK-SG--FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPK  359 (404)
T ss_dssp             TEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET-TH--HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCH
T ss_pred             CeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeC-CC--HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCH
Confidence                                     1777788773 21  2334455557788554311                     


Q ss_pred             -----CC--CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        236 -----EY--GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       236 -----~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                           .+  .+.+|+++.+    ++++++++.|+++++.+..
T Consensus       360 ~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~~  397 (404)
T 1e5e_A          360 EEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALLR  397 (404)
T ss_dssp             HHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHHH
Confidence                 11  4789998776    8899999999999987654

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.52  E-value=7.7e-13  Score=121.29  Aligned_cols=173  Identities=11%  Similarity=0.063  Sum_probs=117.6

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh----CCEEEEecccccCccccCccccccccCCCC
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI----GGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~----g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                      +++++.++   +++++|++|++++..|.+.+    +++|.++|++|    |+++|+||+|+.+.+ .. .+.   +  .+
T Consensus       129 ~~l~~~i~---~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~~~-~~-~~~---~--~~  194 (393)
T 1n8p_A          129 NDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSPYI-SN-PLN---F--GA  194 (393)
T ss_dssp             HHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CC-GGG---G--TC
T ss_pred             HHHHHhcc---cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccccc-CC-HHH---c--CC
Confidence            44555553   46899999999999998886    99999999999    999999999986543 23 222   2  37


Q ss_pred             cEE--EecccccC-Ccce-eEEEec-HHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        154 DII--TVGKPMGN-GMPI-GAVITS-RKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       154 Div--~~sK~l~~-G~p~-gav~~~-~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      |++  +++|.+++ |+++ |+++++ +++++.+..                           +++..++.+.+.+.|++.
T Consensus       195 di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~  274 (393)
T 1n8p_A          195 DIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAAD  274 (393)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             eEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Confidence            777  68899996 6888 888885 777766543                           122333444555555431


Q ss_pred             ----------------------------c-CceeEEEEecccHHHHHHHHHHHHCCcEEeec----------C-------
Q psy11784        202 ----------------------------L-HIFWCLILLSITYYLYRYTRRMKEAKIIVANE----------G-------  235 (284)
Q Consensus       202 ----------------------------~-G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~----------~-------  235 (284)
                                                  . |.++++++.+.......+...+...++.+..+          .       
T Consensus       275 ~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~  354 (393)
T 1n8p_A          275 KENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIP  354 (393)
T ss_dssp             TTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSC
T ss_pred             CCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCcceeeccccccccccC
Confidence                                        1 55777777433345666666654434332211          1       


Q ss_pred             --------CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        236 --------EYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       236 --------~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                              ...+.||++.....++++|+.+.+.|+++
T Consensus       355 ~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          355 KEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             TTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence                    11368999999999999999888888654

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.51  E-value=3.2e-13  Score=129.13  Aligned_cols=188  Identities=13%  Similarity=0.049  Sum_probs=119.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHH--HHhCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI--HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~--~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .++|++.+   ..++.+|++...++..|. ..+.+.+++|.++|  ++||+++|+||+|..|..... .......+....
T Consensus       235 ~~~l~~~~---~~~~k~v~l~~p~NPtG~-~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~-s~~~~~~~~~i~  309 (546)
T 2zy4_A          235 DSELDKLK---DPAIKIFFCVNPSNPPSV-KMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQ-SLFAICPENTLL  309 (546)
T ss_dssp             HHHHGGGG---STTEEEEEEESSCSSSCB-CCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCC-CHHHHCGGGEEE
T ss_pred             HHHHHHhh---CCCCeEEEEECCCCCCCc-cCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCc-CHHHhCCCCEEE
Confidence            45665544   245777777665666775 56888899999999  889999999999998854222 111111112222


Q ss_pred             EEEeccccc-CCcceeEEEecHH-HHHhch--------------------------------------------h-----
Q psy11784        155 IITVGKPMG-NGMPIGAVITSRK-IAESLN--------------------------------------------C-----  183 (284)
Q Consensus       155 iv~~sK~l~-~G~p~gav~~~~~-i~~~~~--------------------------------------------~-----  183 (284)
                      +.+|||.+| .|+++|+++++++ +++.+.                                            .     
T Consensus       310 ~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~  389 (546)
T 2zy4_A          310 VYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQ  389 (546)
T ss_dssp             EEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHH
T ss_pred             EEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHH
Confidence            458999997 6899999999875 544330                                            0     


Q ss_pred             -----------------------hhhHHHHHHHHHHHHHh-c------cCceeEEEEec------cc----------HHH
Q psy11784        184 -----------------------LDDNRPSGKYLVRPLGI-N------LHIFWCLILLS------IT----------YYL  217 (284)
Q Consensus       184 -----------------------l~~~~~~~~~l~~~L~~-~------~G~~~~i~~~~------~~----------~~~  217 (284)
                                             .+.++++.+.+.+.|.. .      .|+++++++..      ..          ...
T Consensus       390 Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~  469 (546)
T 2zy4_A          390 QVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTG  469 (546)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGTSSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHH
Confidence                                   00111222222222210 0      34455666521      00          012


Q ss_pred             HHHHHHHHHCCcEEeecCCC---CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        218 YRYTRRMKEAKIIVANEGEY---GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       218 ~~~~~~l~~~Gv~~~~~~~~---~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      ..+.+.+.++||.+.|+..+   .+++|++.. ..+++++++++++|.++++++.+
T Consensus       470 ~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~~  524 (546)
T 2zy4_A          470 DMLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADELYA  524 (546)
T ss_dssp             HHHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHHH
Confidence            34566777899999997644   368999875 45899999999999999988764

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.51  E-value=1.2e-12  Score=118.86  Aligned_cols=227  Identities=15%  Similarity=0.161  Sum_probs=142.9

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      |+|++.|++..+. ....+|++...+||+....+.... ..          +.++|....   .+.-|        .++|
T Consensus        63 t~al~~~l~~l~~-~~gd~Vi~~~~~~~~~~~~~~~~g-~~----------~~~v~~~~~---~~~~d--------~~~l  119 (388)
T 1b9h_A           63 THALELALQVMGV-GPGTEVIVPAFTFISSSQAAQRLG-AV----------TVPVDVDAA---TYNLD--------PEAV  119 (388)
T ss_dssp             HHHHHHHHHHTTC-CTTCEEEEESSSCTHHHHHHHHTT-CE----------EEEECBCTT---TCCBC--------HHHH
T ss_pred             HHHHHHHHHHcCC-CCcCEEEECCCccHHHHHHHHHcC-CE----------EEEEecCCC---cCCCC--------HHHH
Confidence            4677888776532 233578888899988765433211 10          112222110   11112        5777


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcEEEec
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      ++.+.   +++++|+  |... .|...+    +++|.++|++||+++|+||+|+ |+...|. .  ...+   +|++++|
T Consensus       120 ~~~i~---~~~~~v~--~~n~-tG~~~~----l~~i~~la~~~~~~li~D~a~~~g~~~~~~-~--~~~~---~~i~~~S  183 (388)
T 1b9h_A          120 AAAVT---PRTKVIM--PVHM-AGLMAD----MDALAKISADTGVPLLQDAAHAHGARWQGK-R--VGEL---DSIATFS  183 (388)
T ss_dssp             HHHCC---TTEEEEC--CBCG-GGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTE-E--GGGS---SSCEEEE
T ss_pred             HHhcC---cCceEEE--EeCC-ccCcCC----HHHHHHHHHHcCCEEEEecchhcCCccCCe-e--cccc---cceEEEE
Confidence            77764   4577766  5543 465554    8999999999999999999998 4433332 1  1222   2555544


Q ss_pred             ----ccccCCcceeEEEecHH-H--HHhc--------------------------hh----------------hhhHHHH
Q psy11784        160 ----KPMGNGMPIGAVITSRK-I--AESL--------------------------NC----------------LDDNRPS  190 (284)
Q Consensus       160 ----K~l~~G~p~gav~~~~~-i--~~~~--------------------------~~----------------l~~~~~~  190 (284)
                          |++++| .+|+++++++ +  ++.+                          ..                .++.+++
T Consensus       184 ~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~  262 (388)
T 1b9h_A          184 FQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDER  262 (388)
T ss_dssp             CCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             ccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                888775 6788888765 5  3332                          00                2345667


Q ss_pred             HHHHHHHHHhc-----c----------CceeEEEEecc-cHHHHHHHHHHHHCCcEEeecCCC-----------------
Q psy11784        191 GKYLVRPLGIN-----L----------HIFWCLILLSI-TYYLYRYTRRMKEAKIIVANEGEY-----------------  237 (284)
Q Consensus       191 ~~~l~~~L~~~-----~----------G~~~~i~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~~-----------------  237 (284)
                      .+++.+.|+++     .          +.++++.+... ......+.+.|.++||.+.++.+.                 
T Consensus       263 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~  342 (388)
T 1b9h_A          263 WTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESV  342 (388)
T ss_dssp             HHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCH
T ss_pred             HHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccc
Confidence            77888888764     1          23445554211 125678999999999999764210                 


Q ss_pred             --------------CCEEEEEcCCCC-CHHHHHHHHHHHHHHHHH
Q psy11784        238 --------------GNVLLFLPAMCL-TTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       238 --------------~~~lr~~p~l~~-t~~~id~~~~~l~~~l~~  267 (284)
                                    .+.|||.....+ |++|||++++.|.+++++
T Consensus       343 ~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          343 DAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             HHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                          125888877788 999999999999988754

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.51  E-value=3.1e-13  Score=124.65  Aligned_cols=241  Identities=15%  Similarity=0.152  Sum_probs=135.6

Q ss_pred             CcHHHHHHHHHH-Hc-----cCCccEEEEcCCCcccc-hhhhcCCCCcc----cccCC-CCCceEEccCCCCcCCCCCCC
Q psy11784          1 SEANDLALQLAR-AY-----TGRQNIVVVDAAYHGTV-NLLLDISPRAF----MLSSE-KKPWVHVIPFPDTYRGEFSAD   68 (284)
Q Consensus         1 seA~e~AlklAr-~~-----~~r~~il~~~~~yHG~t-~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~   68 (284)
                      +||++.+++... .+     ....+|++...+||+.. ..+........    ..... ....+..+|.... .+  ..+
T Consensus        88 t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~--~~d  164 (432)
T 3a9z_A           88 TESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NG--QVE  164 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TS--SCC
T ss_pred             HHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cC--CcC
Confidence            478888998874 22     12367888899998852 21111111100    00000 0011223343210 01  111


Q ss_pred             chHHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhC----------CEEEEecccccCcc
Q psy11784         69 DPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIG----------GVVIADEIQCGMGR  138 (284)
Q Consensus        69 ~~~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g----------~llI~DEv~tG~gr  138 (284)
                              .++|++.+.   +++++|++++.++..|.+.+    +++|.++|++||          +++|+||+|. +|+
T Consensus       165 --------~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~  228 (432)
T 3a9z_A          165 --------VEDILAAVR---PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGK  228 (432)
T ss_dssp             --------HHHHHHTCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTT
T ss_pred             --------HHHHHHhcc---CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCC
Confidence                    566766654   46889999999999998887    789999999999          9999999994 554


Q ss_pred             ccCccccccccCCCCcEEEe--cccccCCcceeEEEecHHH-HHhch----------h----------------------
Q psy11784        139 SGSHFWAFQTQGAVPDIITV--GKPMGNGMPIGAVITSRKI-AESLN----------C----------------------  183 (284)
Q Consensus       139 ~G~~~~a~~~~g~~pDiv~~--sK~l~~G~p~gav~~~~~i-~~~~~----------~----------------------  183 (284)
                      ..   ....  ...+|++++  +|.+  |.++|++++++++ ...+.          .                      
T Consensus       229 ~~---~~~~--~~~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~  301 (432)
T 3a9z_A          229 RR---VDVE--DLGVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS  301 (432)
T ss_dssp             SC---CCHH--HHCCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHH
T ss_pred             cc---cChh--hcCCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHH
Confidence            32   1222  134787755  8976  3569999998765 22221          0                      


Q ss_pred             ------hhhHHHHHHHHHHHHHhccC----------------ceeEEEEecccHHHHHHHHHHHHCCcEEeec-------
Q psy11784        184 ------LDDNRPSGKYLVRPLGINLH----------------IFWCLILLSITYYLYRYTRRMKEAKIIVANE-------  234 (284)
Q Consensus       184 ------l~~~~~~~~~l~~~L~~~~G----------------~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~-------  234 (284)
                            .++++++.+++.+.|+++.|                .+..+.+.........+.+.+  +|+++..+       
T Consensus       302 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~  379 (432)
T 3a9z_A          302 ENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC--QTLLASVGASCHSDH  379 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC--SSEECBSSCGGGGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh--cCeEEeccccccCCC
Confidence                  22556667777777766312                234455532111234454444  24444321       


Q ss_pred             -----------CC----CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        235 -----------GE----YGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       235 -----------~~----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                                 +.    ..+.+|++++..+|++|+++++++|+++++++.
T Consensus       380 ~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~  429 (432)
T 3a9z_A          380 EDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE  429 (432)
T ss_dssp             TTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence                       10    137899999998999999999999999988764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.50  E-value=3.2e-13  Score=122.99  Aligned_cols=226  Identities=11%  Similarity=-0.001  Sum_probs=132.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhh--cCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLL--DISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      ++|++.|++..    ...+|+....+|||......  ...+.          .+..+  .         |        .+
T Consensus        86 t~a~~~~~~~~----~gd~Vl~~~~~y~~~~~~~~~~~~~g~----------~~~~v--~---------d--------~~  132 (374)
T 2aeu_A           86 SSAILATILAL----KPKKVIHYLPELPGHPSIERSCKIVNA----------KYFES--D---------K--------VG  132 (374)
T ss_dssp             HHHHHHHHHHH----CCSEEEEECSSSSCCTHHHHHHHHTTC----------EEEEE--S---------C--------HH
T ss_pred             HHHHHHHHHhC----CCCEEEEecCCCCccHHHHHHHHHcCc----------EEEEe--C---------C--------HH
Confidence            36777787754    34578888888888543211  11110          01111  0         1        45


Q ss_pred             HHHHHHHhcCCCeeE-EEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE-
Q psy11784         79 AARNIMEAHRDNIAT-LICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII-  156 (284)
Q Consensus        79 ~l~~~i~~~~~~vaa-vi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv-  156 (284)
                      ++++.    .+++++ |++++.++.+|.   +...+++|.++|++||+++|+||+|..+ ..|. ..........+|++ 
T Consensus       133 ~l~~~----~~~~~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~-~~~~~~~~~~~di~~  203 (374)
T 2aeu_A          133 EILNK----IDKDTLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLL-FNQPPALKLGADLVV  203 (374)
T ss_dssp             HHHTT----CCTTEEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHH-TTCCCHHHHTCSEEE
T ss_pred             HHHhc----CCCccEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccc-cccCCccccCCcEEE
Confidence            66554    245888 999988877774   5667999999999999999999988633 1111 00000111246877 


Q ss_pred             -EecccccCCcceeEEEecHHHHHhchh--------------------h--------hhHHHHHHHH----HHHHHh---
Q psy11784        157 -TVGKPMGNGMPIGAVITSRKIAESLNC--------------------L--------DDNRPSGKYL----VRPLGI---  200 (284)
Q Consensus       157 -~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------l--------~~~~~~~~~l----~~~L~~---  200 (284)
                       +++|.++| +++|++++++++++.+..                    +        ++..++.+.+    ++.|++   
T Consensus       204 ~S~sK~l~g-~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  282 (374)
T 2aeu_A          204 TSTDKLMEG-PRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELK  282 (374)
T ss_dssp             EETTSSSSS-CSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHT
T ss_pred             ecCcccccC-cceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             48999875 789999999998876543                    1        1122222222    333332   


Q ss_pred             -c------------cCceeEEEEecccH---HHHHHHHHH-HHCCcEEeecCC---CCCEEEEEcCC-CCCHHHHHHHHH
Q psy11784        201 -N------------LHIFWCLILLSITY---YLYRYTRRM-KEAKIIVANEGE---YGNVLLFLPAM-CLTTENVLFIVS  259 (284)
Q Consensus       201 -~------------~G~~~~i~~~~~~~---~~~~~~~~l-~~~Gv~~~~~~~---~~~~lr~~p~l-~~t~~~id~~~~  259 (284)
                       +            .|.++...-.+...   ...+++..+ .++||++.++..   ..+++||.++. ..++.+++.+++
T Consensus       283 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~  362 (374)
T 2aeu_A          283 AIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIK  362 (374)
T ss_dssp             TTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHH
T ss_pred             hhhhccCcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHH
Confidence             1            12222211001100   112365554 468999988643   23589998763 334445888888


Q ss_pred             HHHHHHHHHh
Q psy11784        260 TLNRIFTSLQ  269 (284)
Q Consensus       260 ~l~~~l~~~~  269 (284)
                      .|+++++++.
T Consensus       363 ~l~~~l~~~~  372 (374)
T 2aeu_A          363 AIVESIKMAF  372 (374)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            8888888764

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.50  E-value=1.9e-13  Score=123.61  Aligned_cols=218  Identities=14%  Similarity=0.141  Sum_probs=137.0

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      |+|++.|++.++.- ...+|++...+|++....+.... ..          +.+++....   .+.-|        .+++
T Consensus        60 t~al~~al~~~~~~-~gd~Vi~~~~~~~~~~~~~~~~G-~~----------~~~~~~~~~---~~~~d--------~~~l  116 (367)
T 3nyt_A           60 TDALQIVQMALGVG-PGDEVITPGFTYVATAETVALLG-AK----------PVYVDIDPR---TYNLD--------PQLL  116 (367)
T ss_dssp             HHHHHHHHHHTTCC-TTCEEEEESSSCTHHHHHHHHTT-CE----------EEEECBCTT---TCSBC--------GGGT
T ss_pred             HHHHHHHHHHhCCC-CcCEEEECCCccHHHHHHHHHcC-CE----------EEEEecCCc---cCCcC--------HHHH
Confidence            46888888877532 34578888888887655443321 11          112222110   01111        3455


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcEEEec
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDIITVG  159 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDiv~~s  159 (284)
                      ++.+.   +++++|++++..|   ...+    +++|.++|++||+++|+||+|+ |....|+      ..+...|++++|
T Consensus       117 ~~~i~---~~~~~v~~~~~~G---~~~~----~~~i~~la~~~~~~li~D~a~~~g~~~~~~------~~~~~~di~~~S  180 (367)
T 3nyt_A          117 EAAIT---PRTKAIIPVSLYG---QCAD----FDAINAIASKYGIPVIEDAAQSFGASYKGK------RSCNLSTVACTS  180 (367)
T ss_dssp             GGGCC---TTEEEECCBCGGG---CCCC----HHHHHHHHHHTTCCBEEECTTTTTCEETTE------ETTSSSSEEEEE
T ss_pred             HHhcC---cCCcEEEeeCCcc---Chhh----HHHHHHHHHHcCCEEEEECccccCCeECCe------eccCCCCEEEEE
Confidence            55553   5688888665443   3333    9999999999999999999997 4432332      222334999887


Q ss_pred             ----ccccC-CcceeEEEe-cHHHHHhchh---------------------------------------hhhHHHHHHHH
Q psy11784        160 ----KPMGN-GMPIGAVIT-SRKIAESLNC---------------------------------------LDDNRPSGKYL  194 (284)
Q Consensus       160 ----K~l~~-G~p~gav~~-~~~i~~~~~~---------------------------------------l~~~~~~~~~l  194 (284)
                          |.+++ |. .|++++ ++++++.+..                                       .++.+++.+++
T Consensus       181 f~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~  259 (367)
T 3nyt_A          181 FFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEY  259 (367)
T ss_dssp             CCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                99988 76 677777 4666554321                                       22555667777


Q ss_pred             HHHHHhccCc--------------eeEEEEecccHHHHHHHHHHHHCCcEEeecCC--------C--------------C
Q psy11784        195 VRPLGINLHI--------------FWCLILLSITYYLYRYTRRMKEAKIIVANEGE--------Y--------------G  238 (284)
Q Consensus       195 ~~~L~~~~G~--------------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--------~--------------~  238 (284)
                      .+.|+++ |+              .+.+.+    .....+.+.|.++||.+++..+        .              .
T Consensus       260 ~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (367)
T 3nyt_A          260 DLSLKQV-GIGTPFIEVNNISVYAQYTVRM----DNRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAAT  334 (367)
T ss_dssp             HHHHHHT-TCCCCCCCTTEECCCSSEEEEC----SSHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHH
T ss_pred             HHHhccC-CeeccCCCCCCceeeEEEEEEe----CCHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHh
Confidence            7777764 21              112221    1467889999999998875321        0              1


Q ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        239 NVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       239 ~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      ..||+...-..|++|++.+++.+.+
T Consensus       335 ~~l~lp~~~~~t~~~i~~v~~~~~~  359 (367)
T 3nyt_A          335 QVMSLPMHPYLDTASIKIICAALTN  359 (367)
T ss_dssp             HEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred             CeEEccCCCCCCHHHHHHHHHHHHH
Confidence            3678877778899999999998854

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.49  E-value=2e-12  Score=118.89  Aligned_cols=93  Identities=13%  Similarity=0.083  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhC-CEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIG-GVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g-~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+++++.++   +++.+|++|+..+..|.+.+    +++|.++|++|| +++|+||+|+++. .+. .     .+..+|+
T Consensus       141 ~~~l~~~i~---~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~-~~~-~-----~~~~~di  206 (403)
T 3cog_A          141 IKLLEAAIT---PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPY-FQR-P-----LALGADI  206 (403)
T ss_dssp             HHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTT-TCC-T-----TTTTCSE
T ss_pred             HHHHHHhcC---cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcccc-cCC-c-----cccCCeE
Confidence            567777664   46899999999999998886    999999999999 9999999998652 222 1     1245788


Q ss_pred             E--EecccccC-C-cceeEEEec-HHHHHhchh
Q psy11784        156 I--TVGKPMGN-G-MPIGAVITS-RKIAESLNC  183 (284)
Q Consensus       156 v--~~sK~l~~-G-~p~gav~~~-~~i~~~~~~  183 (284)
                      +  +++|.+++ | .++|+++++ +++++.+..
T Consensus       207 v~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~  239 (403)
T 3cog_A          207 SMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF  239 (403)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH
T ss_pred             EEEcChhhccCCCCCeEEEEEECcHHHHHHHHH
Confidence            7  68899986 3 578999985 777666543

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.48  E-value=1e-13  Score=129.29  Aligned_cols=167  Identities=11%  Similarity=0.013  Sum_probs=110.5

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc-CccccCccccccccCCCCcEEEec--ccccCC
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG-MGRSGSHFWAFQTQGAVPDIITVG--KPMGNG  165 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG-~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G  165 (284)
                      +++++|++.+ ++..|...+    +++|.++|++||+++|+||+|++ ++..+. .+.....  .+|+++.|  |.++++
T Consensus       145 ~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~--g~Di~~~S~~K~l~~~  216 (446)
T 2x3l_A          145 DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY--QADYVVQSFHKTLPAL  216 (446)
T ss_dssp             --CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG--TCSEEEECHHHHSSSC
T ss_pred             CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc--CCCEEEECCccccccc
Confidence            3577888887 666787776    99999999999999999999986 222221 1222223  37888776  998877


Q ss_pred             cceeEEEecHHHHH--hchh------------------------hh-----hHHHHHHHHHHHHHhc--------cCcee
Q psy11784        166 MPIGAVITSRKIAE--SLNC------------------------LD-----DNRPSGKYLVRPLGIN--------LHIFW  206 (284)
Q Consensus       166 ~p~gav~~~~~i~~--~~~~------------------------l~-----~~~~~~~~l~~~L~~~--------~G~~~  206 (284)
                      .++|++++++++++  .+..                        ++     ++.+....+.+.+++.        .+..+
T Consensus       217 ~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~l  296 (446)
T 2x3l_A          217 TMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENKGFEMLQVDDPLKL  296 (446)
T ss_dssp             TTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTCEEEECSSTTEE
T ss_pred             cccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHcCCEECcCCCCeEE
Confidence            77899999876543  2211                        00     0222222333333321        12223


Q ss_pred             EEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        207 CLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       207 ~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      .+.+ + .....++.+.|.++||.+...+  .+.+|+.++..+|++++ +++++|.++++.+
T Consensus       297 ~i~~-~-~~~~~~l~~~L~~~GI~v~~~g--~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          297 LIKY-E-GFTGHDIQNWFMNAHIYLELAD--DYQALAILPLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             EEEC-T-TSCHHHHHHHHHHTTEEESEEC--SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             EEEe-C-CcCHHHHHHHHHHCCCEEEecC--CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence            3333 2 2346678899999999997322  46899999998999999 9999999988665

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.47  E-value=3e-12  Score=117.74  Aligned_cols=227  Identities=15%  Similarity=0.209  Sum_probs=141.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      |+|++.|++..+.- ...+|++...+|++....+.... ..          +..+|...   ..+.-|        .+++
T Consensus        67 t~al~~~~~~~~~~-~gd~Vl~~~~~~~~~~~~~~~~g-~~----------~~~~~~~~---~~~~~d--------~~~l  123 (418)
T 2c81_A           67 STALMLALEALGIG-EGDEVIVPSLTWIATATAVLNVN-AL----------PVFVDVEA---DTYCID--------PQLI  123 (418)
T ss_dssp             HHHHHHHHHHTTCC-TTCEEEEESSSCTHHHHHHHHTT-CE----------EEEECBCT---TTCSBC--------HHHH
T ss_pred             HHHHHHHHHHcCCC-CcCEEEECCCccHhHHHHHHHcC-CE----------EEEEecCC---CCCCcC--------HHHH
Confidence            35677777765322 23568888888888765443211 11          11222211   011111        5666


Q ss_pred             HHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcc-ccCccccccccCCCCcEE--E
Q psy11784         81 RNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGR-SGSHFWAFQTQGAVPDII--T  157 (284)
Q Consensus        81 ~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr-~G~~~~a~~~~g~~pDiv--~  157 (284)
                      ++.++   +++++|++...   .|...+    +++|.++|++||+++|+||+|+.+.. .|.      ..+..+|++  +
T Consensus       124 ~~~i~---~~~~~v~~~~~---~G~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~~~~------~~~~~~~~~~~s  187 (418)
T 2c81_A          124 KSAIT---DKTKAIIPVHL---FGSMAN----MDEINEIAQEHNLFVIEDCAQSHGSVWNNQ------RAGTIGDIGAFS  187 (418)
T ss_dssp             GGGCC---TTEEEECCBCC---TTCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTE------ETTSSSSEEEEE
T ss_pred             HHhhC---CCCeEEEEeCC---cCCccc----HHHHHHHHHHCCCEEEEECcccccCccCCE------ecccccceEEEe
Confidence            66554   46788887653   454443    99999999999999999999986542 222      122224555  4


Q ss_pred             e--cccccCCcceeEEEec-HHHHHhchh---------------------------------------------------
Q psy11784        158 V--GKPMGNGMPIGAVITS-RKIAESLNC---------------------------------------------------  183 (284)
Q Consensus       158 ~--sK~l~~G~p~gav~~~-~~i~~~~~~---------------------------------------------------  183 (284)
                      |  +|.+++| +.|+++++ +++++.+..                                                   
T Consensus       188 ~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~  266 (418)
T 2c81_A          188 CQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELD  266 (418)
T ss_dssp             CCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHH
T ss_pred             ccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHH
Confidence            5  8999987 88999984 665432210                                                   


Q ss_pred             --hhhHHHHHHHHHHHHHhc---------cC----c--eeEEEEecc----cHHHHHHHHHHHHC-CcE---EeecC-C-
Q psy11784        184 --LDDNRPSGKYLVRPLGIN---------LH----I--FWCLILLSI----TYYLYRYTRRMKEA-KII---VANEG-E-  236 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~---------~G----~--~~~i~~~~~----~~~~~~~~~~l~~~-Gv~---~~~~~-~-  236 (284)
                        .++.+++.+++.+.|+++         .+    .  ++.+.+ +.    .....++.+.|.++ ||.   +.++. + 
T Consensus       267 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~  345 (418)
T 2c81_A          267 DKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRF-DPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPV  345 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEE-CGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCG
T ss_pred             HHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEE-ccccccccCHHHHHHHHHHcCCCCccccccccccc
Confidence              123344556666677653         12    1  122344 22    23567899999999 999   76531 0 


Q ss_pred             -----------------------------C-------CCEEEEEcCCCC-CHHHHHHHHHHHHHHHHHH
Q psy11784        237 -----------------------------Y-------GNVLLFLPAMCL-TTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       237 -----------------------------~-------~~~lr~~p~l~~-t~~~id~~~~~l~~~l~~~  268 (284)
                                                   .       .+.||+.++..+ |++|++.+++.|+++++++
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~  414 (418)
T 2c81_A          346 HKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF  414 (418)
T ss_dssp             GGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred             ccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence                                         0       148999999999 9999999999999987654

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.43  E-value=9.1e-12  Score=117.12  Aligned_cols=188  Identities=12%  Similarity=-0.013  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhcC-CC--eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEAHR-DN--IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~--vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .++|++.|+... .+  ..+|++.-.....|.+.+    +++|.++|++||+++++|++|.|+...+. .+.....|+ .
T Consensus       225 ~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~-~~~~~~~gi~~  299 (481)
T 4e1o_A          225 GEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCP-EFRGFLKGIEY  299 (481)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSG-GGGGGGTTGGG
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhCh-hhHHHhcCccc
Confidence            678888886321 22  445555544556787766    99999999999999999999976422222 122122343 3


Q ss_pred             CcEEEe--cccccCCcceeEEEecHH-HHH-hch-----------------------------h----------------
Q psy11784        153 PDIITV--GKPMGNGMPIGAVITSRK-IAE-SLN-----------------------------C----------------  183 (284)
Q Consensus       153 pDiv~~--sK~l~~G~p~gav~~~~~-i~~-~~~-----------------------------~----------------  183 (284)
                      .|.+++  .|+++..+..|+++.+++ ... .+.                             .                
T Consensus       300 aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~  379 (481)
T 4e1o_A          300 ADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQ  379 (481)
T ss_dssp             CSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHH
Confidence            588776  598886566777777543 221 100                             0                


Q ss_pred             --hhhHHHHHHHHHHHHHhc---------cCceeEEEEecccHHHHHHHHHHHHCCc-EEeecCCC-CCEEEEEcC-CCC
Q psy11784        184 --LDDNRPSGKYLVRPLGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKI-IVANEGEY-GNVLLFLPA-MCL  249 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv-~~~~~~~~-~~~lr~~p~-l~~  249 (284)
                        +++..++.+++.+.|+++         ...++.+.+.+......++.+.|.++|. ++.+.... ..++|++.. ...
T Consensus       380 ~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~t  459 (481)
T 4e1o_A          380 AHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFT  459 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCC
Confidence              346667788888888875         1123444443333456789999998884 44443222 357999855 345


Q ss_pred             CHHHHHHHHHHHHHHHHHHh
Q psy11784        250 TTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       250 t~~~id~~~~~l~~~l~~~~  269 (284)
                      |++||++++++|+++++++.
T Consensus       460 t~~di~~~~~~i~~~~~~l~  479 (481)
T 4e1o_A          460 TRDDILRDWNLIRDAATLIL  479 (481)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999988764

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.41  E-value=7.7e-12  Score=111.90  Aligned_cols=163  Identities=9%  Similarity=0.031  Sum_probs=117.3

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh-CCEEEEecccccCccccCccccccccCCCCcEEEe--cccccC
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI-GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV--GKPMGN  164 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~--sK~l~~  164 (284)
                      .+++.+|++++.++..|.+.+    +++|.++|++| |+++|+||+|+.+.. .   .  ...  ..|++++  +|.+++
T Consensus       128 ~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~p~~~li~D~a~~~~~~-~---~--~~~--~~d~~~~s~~K~~~~  195 (362)
T 3ffr_A          128 PADAEIICLTHNETSSGVSMP----VEDINTFRDKNKDALIFVDAVSSLPYP-K---F--DWT--KIDSVFFSVQKCFGL  195 (362)
T ss_dssp             CTTCCEEEEESEETTTTEECC----HHHHTTSGGGSTTSEEEEECTTTTTSS-C---C--CTT--SCSEEEEETTSTTCC
T ss_pred             cCCccEEEEEcCCCCcceeCC----HHHHHHHHHhCCCCEEEEecccccCCc-c---c--Chh--HCcEEEEecccccCC
Confidence            356888999998998998887    99999999999 999999999873211 1   1  111  1677754  599985


Q ss_pred             CcceeEEEecHHHHHhch---------------------------h--------------------------hhhHHHHH
Q psy11784        165 GMPIGAVITSRKIAESLN---------------------------C--------------------------LDDNRPSG  191 (284)
Q Consensus       165 G~p~gav~~~~~i~~~~~---------------------------~--------------------------l~~~~~~~  191 (284)
                      +..+|++++++++++.+.                           .                          .++.+++.
T Consensus       196 ~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  275 (362)
T 3ffr_A          196 PAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKA  275 (362)
T ss_dssp             CSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            444678888887754321                           0                          22445566


Q ss_pred             HHHHHHHHhcc-------------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHHH
Q psy11784        192 KYLVRPLGINL-------------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       192 ~~l~~~L~~~~-------------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~  256 (284)
                      +++.+.|+++.             +.++.+.+ +.  ...++.+.|.++||.+.++..  .++.+|+.+....|++++++
T Consensus       276 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~  352 (362)
T 3ffr_A          276 ALINTYIESSKVFSFGVEDAKLRSMTTIVANT-TM--LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHK  352 (362)
T ss_dssp             HHHHHHHHHCSSEEESSSCGGGBCSSEEEEEE-SS--CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHH
T ss_pred             HHHHHHHHHccCceeccCChhhcCCceEEEec-CC--CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHH
Confidence            67777776641             23344444 22  577899999999999987522  35799999998999999999


Q ss_pred             HHHHHHHHH
Q psy11784        257 IVSTLNRIF  265 (284)
Q Consensus       257 ~~~~l~~~l  265 (284)
                      ++++|++++
T Consensus       353 l~~~l~~~~  361 (362)
T 3ffr_A          353 LVQTLKEKI  361 (362)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998753

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.41  E-value=1.2e-11  Score=114.79  Aligned_cols=143  Identities=11%  Similarity=0.009  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHH--hCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE--IGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+++++.++   +++++|++|+.+++......+...+++|.++|++  ||+++|+||+|..+...+. ..   ..|....
T Consensus       155 ~e~l~~~l~---~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~-~~---~~g~Di~  227 (431)
T 3ht4_A          155 FEAVAAAIH---SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE-PC---HVGADLM  227 (431)
T ss_dssp             HHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC-GG---GTTCSEE
T ss_pred             HHHHHhhcC---CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC-cc---ccCCeEE
Confidence            677777765   5689999997443333335677889999999999  9999999999987644333 22   2243333


Q ss_pred             EEEecccccCC--cceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        155 IITVGKPMGNG--MPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       155 iv~~sK~l~~G--~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      +.+++|.++||  .+.|++++++++++.+..                               +++..++++++.+.|+++
T Consensus       228 ~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~L~~~  307 (431)
T 3ht4_A          228 AGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKL  307 (431)
T ss_dssp             EEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            44689999975  567899999998876643                               235556667777777764


Q ss_pred             ------------cCceeEEEEecccHHHHHHHHHHHHC
Q psy11784        202 ------------LHIFWCLILLSITYYLYRYTRRMKEA  227 (284)
Q Consensus       202 ------------~G~~~~i~~~~~~~~~~~~~~~l~~~  227 (284)
                                  .++++++.+ ++.+...++++.|.+.
T Consensus       308 g~~v~p~~~~~~~~li~~i~l-~~~~~~~~~~~~l~~~  344 (431)
T 3ht4_A          308 GMNTSPAWNAPRTDLIQSVQF-DDKDRMIAFCQAIQYA  344 (431)
T ss_dssp             TCCEESCTTSCCSSSCCEEEC-CCHHHHHHHHHHHHHT
T ss_pred             cCEecCCCCCCCccEEEEEEe-CCHHHHHHHHHHHHhc
Confidence                        233667777 3556678888888876

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.37  E-value=1.1e-11  Score=114.27  Aligned_cols=176  Identities=14%  Similarity=0.124  Sum_probs=116.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcce-ecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC--cccccccc-CCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPV-FVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS--HFWAFQTQ-GAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~--~~~a~~~~-g~~  152 (284)
                      .+.+++.+... ....++++-|- ++-.|. .++++.+++|.++|++||+++|.||+|.+|...+.  .......+ ...
T Consensus       161 ~~~l~~~l~~~-~~~~~i~l~~~~~NPTG~-~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~  238 (405)
T 3k7y_A          161 YDLFLNDLRNI-PNGSSVILQISCYNPCSV-NIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKN  238 (405)
T ss_dssp             HHHHHHHHHHS-CSSCEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTT
T ss_pred             HHHHHHHHHhC-CCCeEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcC
Confidence            67788877642 23456777654 676776 56899999999999999999999999998853221  01111111 222


Q ss_pred             CcE---EEeccccc-CCcceeEEEe---cHHHHHhchh------------------------h-----------------
Q psy11784        153 PDI---ITVGKPMG-NGMPIGAVIT---SRKIAESLNC------------------------L-----------------  184 (284)
Q Consensus       153 pDi---v~~sK~l~-~G~p~gav~~---~~~i~~~~~~------------------------l-----------------  184 (284)
                      +.+   -+|||.++ .|+++|++++   ++++++.+..                        +                 
T Consensus       239 ~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~  318 (405)
T 3k7y_A          239 IAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLS  318 (405)
T ss_dssp             CCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            333   37899999 7999999864   4554332210                        1                 


Q ss_pred             hhHHHHHHHHHHHHH----hc------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCC
Q psy11784        185 DDNRPSGKYLVRPLG----IN------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMC  248 (284)
Q Consensus       185 ~~~~~~~~~l~~~L~----~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~  248 (284)
                      ++++++.+++.+.|+    ++            .|+++++.+ +.     ++++.|.++||++.|++      ||+.+ .
T Consensus       319 ~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l-~~-----~~~~~L~~~gV~v~p~~------Ris~a-~  385 (405)
T 3k7y_A          319 QRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPL-LA-----KIAEHLKTHHIYIINNG------RINVS-G  385 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGG-GG-----GGTTTTTTTTEECCTTS------EEEGG-G
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCC-CH-----HHHHHHHHCCEeecCCC------eEEEe-c
Confidence            125566777888887    42            344444433 21     34556678899999742      77533 3


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy11784        249 LTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       249 ~t~~~id~~~~~l~~~l~~  267 (284)
                      .++++|++++++|.++++.
T Consensus       386 ~~~~~i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          386 ITKNNVDYIADKICLSLSQ  404 (405)
T ss_dssp             CCTTHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHHhh
Confidence            5889999999999998763

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.36  E-value=3e-11  Score=112.78  Aligned_cols=182  Identities=10%  Similarity=0.007  Sum_probs=119.1

Q ss_pred             HHHHHHHH-Hhc-CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc-cCCCC
Q psy11784         77 AQAARNIM-EAH-RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT-QGAVP  153 (284)
Q Consensus        77 ~~~l~~~i-~~~-~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~-~g~~p  153 (284)
                      .++|++.+ +.. ..++.+|++.......|.+.+    +++|.++|++||+++++||++.++. .|........ .+ .+
T Consensus       216 ~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~-~g~~~~~~~~~~~-~~  289 (456)
T 2z67_A          216 VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN-NYYLEKLKKAFKY-RV  289 (456)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC-HHHHHHHHHHHTS-CC
T ss_pred             HHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH-HHhhHHHHHhhCC-CC
Confidence            67888888 321 235666655544455677776    9999999999999999999987652 2210011111 22 68


Q ss_pred             cEEEe--cccccCCcceeEEEe-cHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        154 DIITV--GKPMGNGMPIGAVIT-SRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       154 Div~~--sK~l~~G~p~gav~~-~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      |++++  .|.+++++.+|++++ ++++.+.+..                             .++..++.+++.+.|+++
T Consensus       290 D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  369 (456)
T 2z67_A          290 DAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDL  369 (456)
T ss_dssp             SEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88766  698777788999999 5666654422                             235667778888888764


Q ss_pred             c---Cc-------eeEEEEecccHHHHHHHHHHHHCCcE---Ee------ec----CCCCCEEEEEcCCCCCHHHHHHHH
Q psy11784        202 L---HI-------FWCLILLSITYYLYRYTRRMKEAKII---VA------NE----GEYGNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       202 ~---G~-------~~~i~~~~~~~~~~~~~~~l~~~Gv~---~~------~~----~~~~~~lr~~p~l~~t~~~id~~~  258 (284)
                      .   |.       ++.+.+... ....++.+.|.++|+.   +.      .+    ....+++|++.++.+|++|+|+++
T Consensus       370 ~~~~g~~v~~~~~~v~~~~~~~-~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l  448 (456)
T 2z67_A          370 SKKTGGKFLDVESPIASCISVN-SDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSV  448 (456)
T ss_dssp             HHHSSCCBCCCCCSSEEEEECS-SCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHH
T ss_pred             ccccCCEecCCCCeEEEEEecc-cHHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHH
Confidence            2   42       233444111 1145788889999862   22      00    112368999999899999999999


Q ss_pred             HHHHHHH
Q psy11784        259 STLNRIF  265 (284)
Q Consensus       259 ~~l~~~l  265 (284)
                      ++|++++
T Consensus       449 ~~L~~~~  455 (456)
T 2z67_A          449 SKLEKIL  455 (456)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHHh
Confidence            9998654

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.35  E-value=2.1e-11  Score=112.80  Aligned_cols=180  Identities=15%  Similarity=0.101  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc--cccccc-cCCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH--FWAFQT-QGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~--~~a~~~-~g~~p  153 (284)
                      .+.+.+.++...++...++.-+-++-.|. .++++.+++|.++|+++++++|+||+|.||...+..  .+.... .+..+
T Consensus       177 ~~~~~~~l~~~~~~~~vll~~~p~NPtG~-~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~  255 (420)
T 4h51_A          177 FEGMKKDILAAPDGSVFILHQCAHNPTGV-DPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGI  255 (420)
T ss_dssp             HHHHHHHHHHSCSSCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred             HHHHHHHHhccCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCc
Confidence            34555556555556666666665666675 669999999999999999999999999999532210  111111 11222


Q ss_pred             cE---EEeccccc-CCcceeEEEecHHHHHh-------chh-------------------------------------hh
Q psy11784        154 DI---ITVGKPMG-NGMPIGAVITSRKIAES-------LNC-------------------------------------LD  185 (284)
Q Consensus       154 Di---v~~sK~l~-~G~p~gav~~~~~i~~~-------~~~-------------------------------------l~  185 (284)
                      .+   -+|||.++ .|+++|++++..+..+.       +..                                     .+
T Consensus       256 ~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~  335 (420)
T 4h51_A          256 EVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAE  335 (420)
T ss_dssp             CCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            23   37899998 48999999875332221       100                                     12


Q ss_pred             hHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        186 DNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      +++++++.|.+.|+++            .|+|..+.+.      .+.++.|.++||++.+++      ||+.+ .++++.
T Consensus       336 r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls------~e~v~~L~e~~Vy~~~~g------Ris~A-gl~~~n  402 (420)
T 4h51_A          336 RIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLS------KAQCEYCQNHNIFITVSG------RANMA-GLTHET  402 (420)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCC------HHHHHHHHHTTEECCTTC------EEEGG-GCCHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcC------HHHHHHHHhCCEEEcCCC------EEEec-cCCHHH
Confidence            4566677777777764            4555444342      234567889999988643      77543 469999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy11784        254 VLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       254 id~~~~~l~~~l~~~~~  270 (284)
                      |+.++++|.++++++.+
T Consensus       403 i~~~a~aI~~vvr~i~r  419 (420)
T 4h51_A          403 ALMLAQTINDAVRNVNR  419 (420)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999988754

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.35  E-value=1.9e-11  Score=113.41  Aligned_cols=85  Identities=15%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+++++.++   +++++|++|..++..|.+.+    +++|.++|++||++||+||+++.    |. .+....+|....+.
T Consensus       157 ~~~l~~ai~---~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~----~~-~~~~~~~g~div~~  224 (430)
T 3ri6_A          157 SLAVEHACD---ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTP----PY-LLEAKRLGVDIEVL  224 (430)
T ss_dssp             HHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSC----TT-TCCGGGGTCSEEEE
T ss_pred             HHHHHHhhC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc----cc-cCChHHcCCEEEEE
Confidence            577777764   56899999999999998877    99999999999999999999962    22 22222345434445


Q ss_pred             EecccccC-CcceeEEEe
Q psy11784        157 TVGKPMGN-GMPIGAVIT  173 (284)
Q Consensus       157 ~~sK~l~~-G~p~gav~~  173 (284)
                      +++|.++| |..+|.++.
T Consensus       225 S~sK~l~g~g~~~gG~vv  242 (430)
T 3ri6_A          225 SSTKFISGGGTSVGGVLI  242 (430)
T ss_dssp             ECCCEEETTEEECCEEEE
T ss_pred             CCcccccCCCCceEEEEE
Confidence            67899987 444444444

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.33  E-value=8e-11  Score=110.53  Aligned_cols=189  Identities=10%  Similarity=-0.050  Sum_probs=120.6

Q ss_pred             HHHHHHHHHhcC-CC--eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEAHR-DN--IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~--vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .++|++.|+... .+  +.+|++.-.....|.+.+    +++|.++|++||+++++|++|.+.-..+. .+.....|+ .
T Consensus       218 ~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~-~~~~~~~gi~~  292 (475)
T 3k40_A          218 GAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICP-EYRHLMKGIES  292 (475)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSG-GGGGGGTTGGG
T ss_pred             HHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCH-hhHHHhcCccc
Confidence            678888887321 12  444544444455677766    99999999999999999999975322221 111112233 3


Q ss_pred             CcEEEe--cccccCCcceeEEEecHH-HH-Hhch-----------------------------h----------------
Q psy11784        153 PDIITV--GKPMGNGMPIGAVITSRK-IA-ESLN-----------------------------C----------------  183 (284)
Q Consensus       153 pDiv~~--sK~l~~G~p~gav~~~~~-i~-~~~~-----------------------------~----------------  183 (284)
                      .|.+++  .|.+++.+..|+++.+++ .. +.+.                             .                
T Consensus       293 ~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~  372 (475)
T 3k40_A          293 ADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQ  372 (475)
T ss_dssp             CSEEEECHHHHSSCCSSCEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHH
Confidence            588776  498876566677776532 11 1000                             0                


Q ss_pred             --hhhHHHHHHHHHHHHHhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEE-eecCC-CCCEEEEEcC-CCC
Q psy11784        184 --LDDNRPSGKYLVRPLGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIV-ANEGE-YGNVLLFLPA-MCL  249 (284)
Q Consensus       184 --l~~~~~~~~~l~~~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~-~~~~~-~~~~lr~~p~-l~~  249 (284)
                        +++..++.+++.+.|+++         ...++.+.+.+......++.+.|.++|.+. .+... +..++|++.. ...
T Consensus       373 ~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~t  452 (475)
T 3k40_A          373 AHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFT  452 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCC
Confidence              346667788888888875         122344444333445678999999887654 33322 2368999864 345


Q ss_pred             CHHHHHHHHHHHHHHHHHHhh
Q psy11784        250 TTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       250 t~~~id~~~~~l~~~l~~~~~  270 (284)
                      |++||++++++|+++++++.+
T Consensus       453 t~~di~~~~~~i~~~~~~~~~  473 (475)
T 3k40_A          453 QSEDMEYSWKEVSAAADEMEQ  473 (475)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999987753

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.33  E-value=5.4e-11  Score=111.92  Aligned_cols=178  Identities=12%  Similarity=0.031  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .++|++.+...  ++.+|++ ...+.+ .+.+    +++|+++|++||++||+||+|. |+-..|.......    ..|+
T Consensus       182 ~d~le~~i~~~--~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~di  249 (483)
T 1rv3_A          182 YDRLEENARLF--HPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHV  249 (483)
T ss_dssp             HHHHHHHHHHH--CCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSE
T ss_pred             HHHHHHHHhhc--CCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcE
Confidence            67888888632  3567777 444433 4443    8999999999999999999986 4322222111111    3577


Q ss_pred             EEe--cccccCCcceeEEEecHH---------------HHHhchh---------------------------------hh
Q psy11784        156 ITV--GKPMGNGMPIGAVITSRK---------------IAESLNC---------------------------------LD  185 (284)
Q Consensus       156 v~~--sK~l~~G~p~gav~~~~~---------------i~~~~~~---------------------------------l~  185 (284)
                      +++  +|+++ |.+.|+++++++               +.+.+..                                 .+
T Consensus       250 v~~s~~K~l~-GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~  328 (483)
T 1rv3_A          250 VTTTTHKTLR-GCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQR  328 (483)
T ss_dssp             EEEESSGGGC-CCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             EEecCcccCC-CCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHH
Confidence            755  59995 456688888763               2221110                                 22


Q ss_pred             hHHHHHHHHHHHHHhc------cC---ceeEEEEecccHHHHHHHHHHHHCCcEEe----ecC---CCCCEEEEEcCCCC
Q psy11784        186 DNRPSGKYLVRPLGIN------LH---IFWCLILLSITYYLYRYTRRMKEAKIIVA----NEG---EYGNVLLFLPAMCL  249 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~------~G---~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~----~~~---~~~~~lr~~p~l~~  249 (284)
                      ++.++.+++.+.|++.      .|   .+..+.+.+.......+.+.|.+.||.+.    |+.   ...+.+||.++...
T Consensus       329 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~  408 (483)
T 1rv3_A          329 QVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALT  408 (483)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcc
Confidence            5666777888888764      11   23344442222245667788889999998    643   13468999988766


Q ss_pred             C----HHHHHHHHHHHHHHHHH
Q psy11784        250 T----TENVLFIVSTLNRIFTS  267 (284)
Q Consensus       250 t----~~~id~~~~~l~~~l~~  267 (284)
                      |    ++|+++++++|.++++.
T Consensus       409 t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          409 SRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHh
Confidence            6    99999999999999876

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.31  E-value=4.4e-10  Score=106.41  Aligned_cols=187  Identities=14%  Similarity=0.086  Sum_probs=121.2

Q ss_pred             HHHHHHHHHhc---CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEAH---RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .++|++.|+..   +..+.+|++.......|.+.+    +++|.++|++||+++++|++|.|.--... -+.....|+ .
T Consensus       232 ~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~-~~~~~~~g~~~  306 (511)
T 3vp6_A          232 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSR-KHRHKLNGIER  306 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGGGGTTGGG
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhCh-hhhhhccCCcc
Confidence            67888888632   222778888888888888876    99999999999999999999986422111 111112233 4


Q ss_pred             CcEEEe--cccccCCcceeEEEecHH-HHHhch--------------------------------h--------------
Q psy11784        153 PDIITV--GKPMGNGMPIGAVITSRK-IAESLN--------------------------------C--------------  183 (284)
Q Consensus       153 pDiv~~--sK~l~~G~p~gav~~~~~-i~~~~~--------------------------------~--------------  183 (284)
                      .|++++  .|++++.+..|+++.+++ ..+...                                .              
T Consensus       307 aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~g  386 (511)
T 3vp6_A          307 ANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVG  386 (511)
T ss_dssp             CSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHH
Confidence            587765  598886666788877543 332210                                0              


Q ss_pred             ----hhhHHHHHHHHHHHHHhccC-----------ceeEEEEeccc---------------HHHHHHHHHHHHCCcEEee
Q psy11784        184 ----LDDNRPSGKYLVRPLGINLH-----------IFWCLILLSIT---------------YYLYRYTRRMKEAKIIVAN  233 (284)
Q Consensus       184 ----l~~~~~~~~~l~~~L~~~~G-----------~~~~i~~~~~~---------------~~~~~~~~~l~~~Gv~~~~  233 (284)
                          +++..++.+++.+.|++..|           .++.+.+.|..               ....++.+.|+++|+++..
T Consensus       387 l~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~  466 (511)
T 3vp6_A          387 FENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG  466 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence                33666777888888876411           12233322211               1134688899999965543


Q ss_pred             cCC---CCCEEEEEc-CCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        234 EGE---YGNVLLFLP-AMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       234 ~~~---~~~~lr~~p-~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      ..+   ..+++|+.. +...|++||+.+++.|+++-+.+
T Consensus       467 ~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~  505 (511)
T 3vp6_A          467 YQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  505 (511)
T ss_dssp             EEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred             EEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            111   124699988 67789999999999998876654

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.31  E-value=1.4e-10  Score=105.38  Aligned_cols=223  Identities=14%  Similarity=0.138  Sum_probs=137.2

Q ss_pred             CcHHHHHHHHHHH-----ccCCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHHH
Q psy11784          1 SEANDLALQLARA-----YTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQK   75 (284)
Q Consensus         1 seA~e~AlklAr~-----~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
                      |+|++.|++.++.     .....+|++...+||+....+.... ..          +.++|....   .+.-|       
T Consensus        59 t~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g-~~----------~~~~~~~~~---~~~~d-------  117 (390)
T 3b8x_A           59 STANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYG-LR----------VKFVDIDIN---TLNID-------  117 (390)
T ss_dssp             HHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTT-CE----------EEEECBCTT---TCSBC-------
T ss_pred             HHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHcC-CE----------EEEEecCcc---ccCcC-------
Confidence            4678888887742     3334678999999998766544221 11          112222110   11112       


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCc
Q psy11784         76 YAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        76 ~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pD  154 (284)
                       .++|++.+.   +++++|++.+..   |..    ..+++|.++|++||+++|+||+|+ |...      ....+|..+|
T Consensus       118 -~~~l~~~i~---~~~~~v~~~~~~---g~~----~~~~~i~~l~~~~~~~li~D~a~~~g~~~------~~~~~g~~~~  180 (390)
T 3b8x_A          118 -IESLKEAVT---DSTKAILTVNLL---GNP----NNFDEINKIIGGRDIILLEDNCESMGATF------NNKCAGTFGL  180 (390)
T ss_dssp             -HHHHHHHCC---TTEEEEEEECGG---GCC----CCHHHHHHHHTTSCCEEEEECTTCTTCEE------TTEETTSSSS
T ss_pred             -HHHHHHHhC---cCCeEEEEECCc---cCh----hhHHHHHHHHHHcCCEEEEECcCcccCEE------CCcccccccc
Confidence             577777764   357777774333   333    349999999999999999999998 3321      2235677889


Q ss_pred             EEEecccccCCc---ceeEEEecH-HHHHhc------------------------------------------hh-----
Q psy11784        155 IITVGKPMGNGM---PIGAVITSR-KIAESL------------------------------------------NC-----  183 (284)
Q Consensus       155 iv~~sK~l~~G~---p~gav~~~~-~i~~~~------------------------------------------~~-----  183 (284)
                      +.+++|..+.++   ..|++++++ ++.+.+                                          ..     
T Consensus       181 ~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~  260 (390)
T 3b8x_A          181 MGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAI  260 (390)
T ss_dssp             EEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHH
T ss_pred             eEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHH
Confidence            999887555322   247777765 543210                                          00     


Q ss_pred             -----------hhhHHHHHHHHHHHHHhccC----------ce--eEEEEecc-cHHHHHHHHHHHHCCcEEeec--CC-
Q psy11784        184 -----------LDDNRPSGKYLVRPLGINLH----------IF--WCLILLSI-TYYLYRYTRRMKEAKIIVANE--GE-  236 (284)
Q Consensus       184 -----------l~~~~~~~~~l~~~L~~~~G----------~~--~~i~~~~~-~~~~~~~~~~l~~~Gv~~~~~--~~-  236 (284)
                                 .++.+++.+++.+.|+++.|          .+  +.+.+.+. ......+.+.|.++||.+.+.  ++ 
T Consensus       261 ~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~  340 (390)
T 3b8x_A          261 GIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNF  340 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCch
Confidence                       22455666777777766411          12  22333210 224678999999999998752  10 


Q ss_pred             --C----C------------------CEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        237 --Y----G------------------NVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       237 --~----~------------------~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                        .    .                  +.||+.....+|++|++++++.|
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          341 LKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             GGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             hhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence              1    0                  25899888899999999999876

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.29  E-value=3.3e-10  Score=105.39  Aligned_cols=185  Identities=13%  Similarity=0.067  Sum_probs=121.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh------CCEEEEecccccCcc---ccCcccccc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI------GGVVIADEIQCGMGR---SGSHFWAFQ  147 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tG~gr---~G~~~~a~~  147 (284)
                      .++|++.++   +++.+|++.-.....|.+.+    +++|.++|++|      |+++++|++|.++..   .+...+...
T Consensus       177 ~~~l~~~i~---~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~  249 (452)
T 2dgk_A          177 PKRMIEACD---ENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFR  249 (452)
T ss_dssp             HHHHHHHCC---TTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT
T ss_pred             HHHHHHHHh---hCCEEEEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcC
Confidence            677887775   35667776655556788776    99999999996      999999999987522   111001111


Q ss_pred             ccCCCCcEEEec--ccccCCcceeEEEecHH-HH-Hhch----------------------h------------------
Q psy11784        148 TQGAVPDIITVG--KPMGNGMPIGAVITSRK-IA-ESLN----------------------C------------------  183 (284)
Q Consensus       148 ~~g~~pDiv~~s--K~l~~G~p~gav~~~~~-i~-~~~~----------------------~------------------  183 (284)
                      .  -..|+++++  |.+.+|+.+|+++++++ .. +.+.                      .                  
T Consensus       250 ~--~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~  327 (452)
T 2dgk_A          250 L--PRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTK  327 (452)
T ss_dssp             S--TTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--CCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHH
Confidence            1  135766654  87767788999998643 32 2110                      0                  


Q ss_pred             -hhhHHHHHHHHHHHHHhccCc-------------eeEEEEeccc---HHHHHHHHHHHHCCcEEeec----CC-CCCEE
Q psy11784        184 -LDDNRPSGKYLVRPLGINLHI-------------FWCLILLSIT---YYLYRYTRRMKEAKIIVANE----GE-YGNVL  241 (284)
Q Consensus       184 -l~~~~~~~~~l~~~L~~~~G~-------------~~~i~~~~~~---~~~~~~~~~l~~~Gv~~~~~----~~-~~~~l  241 (284)
                       .++..++.+++.+.|+++.|+             ++.+.+.+..   ....++.+.|.++|+.+...    .. ..+.+
T Consensus       328 ~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~l  407 (452)
T 2dgk_A          328 VQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVM  407 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEE
Confidence             235556677788888764111             2222221110   12478999999999975432    11 23589


Q ss_pred             EEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        242 LFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       242 r~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      |++.....|++|+|.+++.|+++++.+.+
T Consensus       408 Ris~~~~~t~e~id~li~~l~~~~~~~~~  436 (452)
T 2dgk_A          408 RIMCRRGFEMDFAELLLEDYKASLKYLSD  436 (452)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99988888999999999999999988754

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.27  E-value=6.5e-10  Score=104.32  Aligned_cols=190  Identities=12%  Similarity=0.005  Sum_probs=119.4

Q ss_pred             HHHHHHHHHhcC-CC--eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEAHR-DN--IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~--vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .++|++.|+... .+  ..+|++--.....|.+.+    +++|.++|++||+++++|++|.++-.... .+.....++ .
T Consensus       219 ~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~-~~~~~~~g~~~  293 (486)
T 1js3_A          219 ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICP-EFRHLLNGVEF  293 (486)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGST-TTGGGGTTGGG
T ss_pred             HHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCH-HHHHHhcCccc
Confidence            678888886321 12  334544433456677766    99999999999999999999986422111 011111222 3


Q ss_pred             CcEEEe--cccccCCcceeEEEecHH-H-HHhch-------------------------------h--------------
Q psy11784        153 PDIITV--GKPMGNGMPIGAVITSRK-I-AESLN-------------------------------C--------------  183 (284)
Q Consensus       153 pDiv~~--sK~l~~G~p~gav~~~~~-i-~~~~~-------------------------------~--------------  183 (284)
                      .|.+++  .|.++..+.+|+++++++ . .+.+.                               .              
T Consensus       294 adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g  373 (486)
T 1js3_A          294 ADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKG  373 (486)
T ss_dssp             CSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHH
T ss_pred             cCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHH
Confidence            577765  598876677898888644 2 22110                               0              


Q ss_pred             ----hhhHHHHHHHHHHHHHhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEc-CC
Q psy11784        184 ----LDDNRPSGKYLVRPLGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLP-AM  247 (284)
Q Consensus       184 ----l~~~~~~~~~l~~~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p-~l  247 (284)
                          +++..++.+++.+.|++.         .+.++.+.+.+......++.+.|.++|+++.....  ..+.+|++. ..
T Consensus       374 ~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~  453 (486)
T 1js3_A          374 LQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSR  453 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCC
Confidence                234556677777888764         12233444422223457888999988865432211  236899985 44


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        248 CLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      ..|+++|++++++|+++++++.++
T Consensus       454 ~~t~~di~~~~~~l~~~~~~~~~~  477 (486)
T 1js3_A          454 KVESGHVRLAWEHIRGLAAELLAA  477 (486)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhh
Confidence            468999999999999999887644

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.26  E-value=6.8e-10  Score=104.91  Aligned_cols=186  Identities=16%  Similarity=0.075  Sum_probs=123.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh------CCEEEEecccccCcc---ccCcccccc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI------GGVVIADEIQCGMGR---SGSHFWAFQ  147 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tG~gr---~G~~~~a~~  147 (284)
                      .++|++.++   +++.+|++.-.....|.+.+    +++|.++|++|      |+++++|++|.|+..   .+...+.+.
T Consensus       192 ~~~l~~~i~---~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~  264 (502)
T 3hbx_A          192 PQQAVDMVD---ENTICVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR  264 (502)
T ss_dssp             HHHHHHHCC---TTEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT
T ss_pred             HHHHHHHHh---hCCEEEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccC
Confidence            677777765   45677777666666688777    99999999999      999999999986531   111001111


Q ss_pred             ccCCCCcEEEe--cccccCCcceeEEEecH-HHH-Hhch----------------------h------------------
Q psy11784        148 TQGAVPDIITV--GKPMGNGMPIGAVITSR-KIA-ESLN----------------------C------------------  183 (284)
Q Consensus       148 ~~g~~pDiv~~--sK~l~~G~p~gav~~~~-~i~-~~~~----------------------~------------------  183 (284)
                        -...|++++  .|.+.++..+|+++.++ +.. +.+.                      .                  
T Consensus       265 --~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~  342 (502)
T 3hbx_A          265 --LPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRN  342 (502)
T ss_dssp             --STTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence              113466543  47776666778777653 322 1100                      0                  


Q ss_pred             -hhhHHHHHHHHHHHHHhcc----------CceeEEEEecc-cHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcC
Q psy11784        184 -LDDNRPSGKYLVRPLGINL----------HIFWCLILLSI-TYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPA  246 (284)
Q Consensus       184 -l~~~~~~~~~l~~~L~~~~----------G~~~~i~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~  246 (284)
                       .++..++.++|.+.|+++-          .-++.+.+.+. ......+.+.|.++|+++.....     ....+|+...
T Consensus       343 ~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~  422 (502)
T 3hbx_A          343 VMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR  422 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC
Confidence             3356667778888888751          11333444221 12345899999999998753221     2358999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        247 MCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       247 l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      ..+|+++++.+++.|+++++.+.+.
T Consensus       423 ~~~t~edid~li~~L~~~l~~l~~~  447 (502)
T 3hbx_A          423 EDFSRTLAERLVIDIEKVMRELDEL  447 (502)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999988653

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.25  E-value=5.4e-11  Score=109.90  Aligned_cols=173  Identities=10%  Similarity=0.034  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHH--hCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE--IGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+++++.++   +++.+|++|...+..|.+.+    +++|.++|++  ||+++|+||+|... ..+. ..     ....|
T Consensus       157 ~~~le~ai~---~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~~-~~~~-p~-----~~g~D  222 (415)
T 2fq6_A          157 GADIVKHLQ---PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAG-VLFK-AL-----DFGID  222 (415)
T ss_dssp             GGGGGGGCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTT-TSSC-GG-----GGTCS
T ss_pred             HHHHHHhhc---cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCccc-ccCC-cc-----ccCCe
Confidence            455666554   46899999999999998887    9999999999  99999999999632 1121 11     23468


Q ss_pred             EE--EecccccC-C-cceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        155 II--TVGKPMGN-G-MPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       155 iv--~~sK~l~~-G-~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      ++  +++|.+++ | ...|++++++++++.+..                           +++..++.+.+.+.|++.  
T Consensus       223 iv~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~  302 (415)
T 2fq6_A          223 VSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQ  302 (415)
T ss_dssp             EEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             EEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            77  56799986 3 356899888877665442                           123344455566666542  


Q ss_pred             ------------------------cCceeEEEEecc--cHHHHHHHHHHHHCCcEEe------------e----------
Q psy11784        202 ------------------------LHIFWCLILLSI--TYYLYRYTRRMKEAKIIVA------------N----------  233 (284)
Q Consensus       202 ------------------------~G~~~~i~~~~~--~~~~~~~~~~l~~~Gv~~~------------~----------  233 (284)
                                              .|.++++.+...  ...+..+...+.-.++.+.            |          
T Consensus       303 v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~  382 (415)
T 2fq6_A          303 VARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQG  382 (415)
T ss_dssp             EEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTC
T ss_pred             eeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchh
Confidence                                    145677777421  2455666665542232221            1          


Q ss_pred             -cCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        234 -EGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       234 -~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                       .+...+.||++..+..++++|+.+.+.|++
T Consensus       383 ~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          383 EIDFSGTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             CCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             hcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence             111247899999998889988888887764

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.19  E-value=4.4e-10  Score=100.62  Aligned_cols=160  Identities=13%  Similarity=0.048  Sum_probs=108.8

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE--ecccccCCc
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT--VGKPMGNGM  166 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~--~sK~l~~G~  166 (284)
                      +++.+|++...++..|.+.+         +++++||+++|+||+|+.+...    .....+    |+++  ++|.++. .
T Consensus       140 ~~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~----~~~~~~----di~~~s~sK~~~~-~  201 (360)
T 1w23_A          140 ENDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP----LKVNQF----GMIYAGAQKNLGP-S  201 (360)
T ss_dssp             TTEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC----CCGGGC----SEEEEETTTTTSC-T
T ss_pred             CCCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCCCC----cCcccC----CEEEEEcccccCC-C
Confidence            46888999988888888653         2334899999999999854321    111222    6765  4599973 2


Q ss_pred             ceeEEEecHHHHHhchh--------------------------------h-------------hhHHHHHHHHHHHHHhc
Q psy11784        167 PIGAVITSRKIAESLNC--------------------------------L-------------DDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       167 p~gav~~~~~i~~~~~~--------------------------------l-------------~~~~~~~~~l~~~L~~~  201 (284)
                      .+|++++++++++.+..                                +             ++.+++.+++.+.|+++
T Consensus       202 G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  281 (360)
T 1w23_A          202 GVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES  281 (360)
T ss_dssp             TCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence            48999999888653310                                1             12334455666666553


Q ss_pred             cCc-------------eeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 LHI-------------FWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 ~G~-------------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      .|+             ++++.+ +......++.+.|.++||.+.++....+.+|+.++...|++++++++++|++++++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          282 NGFYVGHAEKGSRSLMNVTFNL-RNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             TTSSEESSCGGGBCSSEEEEEC-SSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCcccccCCchhccCcEEEEEc-CCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence            111             333333 33334677888999999999876545678999999888999999999999988753

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.17  E-value=3.7e-10  Score=103.02  Aligned_cols=163  Identities=9%  Similarity=0.009  Sum_probs=110.2

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCCc
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNGM  166 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G~  166 (284)
                      +++.+|++....+..|.+.+    +++|.++   ||+++|+||+|+.+...    ....    .+|+++++  |.++.+-
T Consensus       164 ~~~~~v~~~~~~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~~----~~~~----~~di~~~s~sK~~~~~g  228 (398)
T 2fyf_A          164 PSVDVIAWAHNETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGLP----VDIA----ETDAYYFAPQKNFASDG  228 (398)
T ss_dssp             TTCSEEEEESEETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTSC----CCGG----GCSEEEECTTSTTCSCS
T ss_pred             CCCCEEEEeCcCCCcceecc----hHHhhhh---cCCeEEEEeccccCCcc----cCcc----cCcEEEEecCcccCCCC
Confidence            45778888888888888776    3344444   99999999999844321    1111    26887655  9998653


Q ss_pred             ceeEEEecHHHHHhch-------------------------h----------------h-------------hhHHHHHH
Q psy11784        167 PIGAVITSRKIAESLN-------------------------C----------------L-------------DDNRPSGK  192 (284)
Q Consensus       167 p~gav~~~~~i~~~~~-------------------------~----------------l-------------~~~~~~~~  192 (284)
                      .+|++++++++++.+.                         .                +             ++.+++.+
T Consensus       229 g~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~  308 (398)
T 2fyf_A          229 GLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ  308 (398)
T ss_dssp             SEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             ceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4889999988865430                         0                1             12344556


Q ss_pred             HHHHHHHhc-----c--------CceeEEEEecccHHHHHHHHHHHHCCcEEeecCC--CCCEEEEEcCCCCCHHHHHHH
Q psy11784        193 YLVRPLGIN-----L--------HIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE--YGNVLLFLPAMCLTTENVLFI  257 (284)
Q Consensus       193 ~l~~~L~~~-----~--------G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~lr~~p~l~~t~~~id~~  257 (284)
                      ++.+.|+++     .        +.++++.+ +......++.+.|.++||.+.++..  .++.+|+++....|++|++++
T Consensus       309 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~  387 (398)
T 2fyf_A          309 RLYSWAQERPYTTPFVTDPGLRSQVVGTIDF-VDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSAL  387 (398)
T ss_dssp             HHHHHHHHSTTEEESCCSGGGBCSSEEEEEE-CTTSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHH
T ss_pred             HHHHHHHHcCCceeccCChhhcCCcEEEEEC-CCCCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHH
Confidence            666666653     1        11444544 2223467899999999999986421  247899999888899999999


Q ss_pred             HHHHHHHHHH
Q psy11784        258 VSTLNRIFTS  267 (284)
Q Consensus       258 ~~~l~~~l~~  267 (284)
                      +++|++++++
T Consensus       388 ~~~l~~~l~~  397 (398)
T 2fyf_A          388 TECVDWVVER  397 (398)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.14  E-value=2.3e-09  Score=100.89  Aligned_cols=178  Identities=12%  Similarity=0.057  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEc-ceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICE-PVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~E-pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+++++.+...+  ...|++. |..+   ...+    +++|+++|++||++|++|++|. |+-..|.....+.    ..|
T Consensus       192 ~d~le~~l~~~~--~klIi~~~s~~~---~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aD  258 (490)
T 2a7v_A          192 YNQLALTARLFR--PRLIIAGTSAYA---RLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HAD  258 (490)
T ss_dssp             HHHHHHHHHHHC--CSEEEECCSSCC---SCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCS
T ss_pred             HHHHHHHHhhcC--CcEEEEcCCCCC---Cccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCC
Confidence            678888886433  3455554 4433   2223    8999999999999999999985 4322232111111    257


Q ss_pred             EE--EecccccCCcceeEEEecHH---------------HHHhchh---------------------------------h
Q psy11784        155 II--TVGKPMGNGMPIGAVITSRK---------------IAESLNC---------------------------------L  184 (284)
Q Consensus       155 iv--~~sK~l~~G~p~gav~~~~~---------------i~~~~~~---------------------------------l  184 (284)
                      ++  +++|+++| .+.|+++++++               +.+.+..                                 .
T Consensus       259 iv~~S~hK~l~G-p~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~  337 (490)
T 2a7v_A          259 IVTTTTHKTLRG-ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYS  337 (490)
T ss_dssp             EEEEESSGGGCS-CSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             EEEECCcccCcc-ccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHH
Confidence            76  56799964 35578877653               2222211                                 2


Q ss_pred             hhHHHHHHHHHHHHHhc-----c-C---ceeEEEEecccHHHHHHHHHHHHCCcEEeecC-------CCCCEEEEEcCC-
Q psy11784        185 DDNRPSGKYLVRPLGIN-----L-H---IFWCLILLSITYYLYRYTRRMKEAKIIVANEG-------EYGNVLLFLPAM-  247 (284)
Q Consensus       185 ~~~~~~~~~l~~~L~~~-----~-G---~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~lr~~p~l-  247 (284)
                      +++.++.++|.+.|++.     . |   .++.+++.+.......+.+.|.+.||.+....       ..+..||+..|. 
T Consensus       338 ~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~  417 (490)
T 2a7v_A          338 LQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPAL  417 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEeccccc
Confidence            25556678888888774     1 1   24445543222346678888889999997421       134689995543 


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHH
Q psy11784        248 ---CLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       248 ---~~t~~~id~~~~~l~~~l~~~  268 (284)
                         .++++|++++++.|.++++..
T Consensus       418 t~~g~~~~d~~~~~~~i~~~l~~~  441 (490)
T 2a7v_A          418 TSRQFREDDFRRVVDFIDEGVNIG  441 (490)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHhh
Confidence               479999999999999998643

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.06  E-value=8.2e-09  Score=95.05  Aligned_cols=93  Identities=12%  Similarity=0.056  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcc----eecCCCcccCChhHHHHHHHHHHH--hCCEEEEecccccCccccCccccccccC
Q psy11784         77 AQAARNIMEAHRDNIATLICEP----VFVVHGAVVPPPGWLSLMYDYIHE--IGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Ep----v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      .+++++.++   +++.+|++|+    ..+..|.+.+    +++|.++|++  ||+++|+||+|..+ ..+.     +...
T Consensus       149 ~e~l~~ai~---~~tklV~i~~s~g~p~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~-~~~~-----~p~~  215 (409)
T 3jzl_A          149 FPRIAKKMT---PKTKMIGIQRSRGYADRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEF-VEYQ-----EPPE  215 (409)
T ss_dssp             HHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTT-TSSC-----CSGG
T ss_pred             HHHHHHhcc---CCCeEEEEECCCCCCCCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccc-cccC-----Cccc
Confidence            567777664   4689999998    7777776655    9999999999  99999999998633 1111     1111


Q ss_pred             CCCcEE--EecccccCC-cc-eeEEEecHHHHHhch
Q psy11784        151 AVPDII--TVGKPMGNG-MP-IGAVITSRKIAESLN  182 (284)
Q Consensus       151 ~~pDiv--~~sK~l~~G-~p-~gav~~~~~i~~~~~  182 (284)
                      ...|++  +++|.++++ -+ .|++++++++++.+.
T Consensus       216 ~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~  251 (409)
T 3jzl_A          216 VGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCG  251 (409)
T ss_dssp             GTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred             cCCeEEEECccccCCccCCceEEEEEeCHHHHHHHH
Confidence            235776  678999875 24 588889998887664

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=98.97  E-value=1.5e-08  Score=93.64  Aligned_cols=164  Identities=17%  Similarity=0.161  Sum_probs=106.2

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecc-cccCccccCccccccccCCCCcEEEec-cccc---
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEI-QCGMGRSGSHFWAFQTQGAVPDIITVG-KPMG---  163 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv-~tG~gr~G~~~~a~~~~g~~pDiv~~s-K~l~---  163 (284)
                      +++++|++... +..|.+.+    +++|.++|++||+++|+|-- ++ +|.... .   ..+  .+|+++++ |.++   
T Consensus       195 ~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a-~g~~~~-~---~~~--g~D~~~~s~kk~~~~~  262 (438)
T 1wyu_A          195 EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS-LGVLKP-P---GAY--GADIAVGDGQSLGLPM  262 (438)
T ss_dssp             TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-GGTBCC-H---HHH--TCSEEEEECTTTTCCC
T ss_pred             CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-ccCcCC-C---ccC--CCCEEEECCcccCCCc
Confidence            45777777764 77888776    99999999999999995521 22 222111 1   112  37888774 7543   


Q ss_pred             --CCcceeEEEecHHHHHhch------------------------------h----------------------------
Q psy11784        164 --NGMPIGAVITSRKIAESLN------------------------------C----------------------------  183 (284)
Q Consensus       164 --~G~p~gav~~~~~i~~~~~------------------------------~----------------------------  183 (284)
                        +|..+|++++++++.+.+.                              .                            
T Consensus       263 ~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~  342 (438)
T 1wyu_A          263 GFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGL  342 (438)
T ss_dssp             GGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHH
Confidence              2345788888877654330                              0                            


Q ss_pred             ---hhhHHHHHHHHHHHHHhccCc--------eeEEEEecccHHHHHHHHHHHHCCcEE--eecCCC-CCEEEEEcCCCC
Q psy11784        184 ---LDDNRPSGKYLVRPLGINLHI--------FWCLILLSITYYLYRYTRRMKEAKIIV--ANEGEY-GNVLLFLPAMCL  249 (284)
Q Consensus       184 ---l~~~~~~~~~l~~~L~~~~G~--------~~~i~~~~~~~~~~~~~~~l~~~Gv~~--~~~~~~-~~~lr~~p~l~~  249 (284)
                         .++..++.+++.+.|+++.|+        +..+.+. ......++++.|.++||.+  .++... .+.+|+++...+
T Consensus       343 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~  421 (438)
T 1wyu_A          343 REVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALA-LPKDPEAVRRALAERGFHGATPVPREYGENLALFAATELH  421 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEE-CSSCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEe-CCCCHHHHHHHHHHCCceeccccccccCCCeEEEEecccC
Confidence               113444556666666654122        2222221 1124678999999999998  444322 579999999889


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy11784        250 TTENVLFIVSTLNRIF  265 (284)
Q Consensus       250 t~~~id~~~~~l~~~l  265 (284)
                      |++|+++++++|++++
T Consensus       422 t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          422 EEEDLLALREALKEVL  437 (438)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998764

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=98.96  E-value=2.3e-08  Score=90.87  Aligned_cols=176  Identities=16%  Similarity=0.139  Sum_probs=106.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-CCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-g~~pDi  155 (284)
                      .+++++.+...+.++.+|+  |+. ..|...+    +++|.++|+ ||+++|.|++|+ +|-.    +..... +...|+
T Consensus       116 ~~~l~~~i~~~~~~tk~v~--~~~-~~G~~~~----~~~i~~la~-~~~~vi~D~a~a-~g~~----~~~~~~g~~~~d~  182 (377)
T 3ju7_A          116 KTVLWDKIEELKEEVAIVV--PYA-TFGSWMN----LEEYEELEK-KGVPVVVDAAPG-FGLM----NGGMHYGQDFSGM  182 (377)
T ss_dssp             HHHHHHHHHHHGGGEEEEC--CBC-GGGBCCC----CHHHHHHHH-TTCCBEEECTTC-TTCE----ETTEETTTTCSSE
T ss_pred             HHHHHHHHhcCCCCceEEE--EEC-CCCCccC----HHHHHHHHh-cCCEEEEECCCc-cCCe----ECCEeccCCCCcE
Confidence            6778887732112366676  322 2455444    899999999 999999999997 4321    111122 223577


Q ss_pred             EEec----ccccCCcceeEEEec-HHHHHhchh---------------------------------------hhhHHHHH
Q psy11784        156 ITVG----KPMGNGMPIGAVITS-RKIAESLNC---------------------------------------LDDNRPSG  191 (284)
Q Consensus       156 v~~s----K~l~~G~p~gav~~~-~~i~~~~~~---------------------------------------l~~~~~~~  191 (284)
                      .++|    |.+++| ..|+++.+ +++.+.+..                                       +++.+++.
T Consensus       183 ~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~  261 (377)
T 3ju7_A          183 IIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRIS  261 (377)
T ss_dssp             EEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             EEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665    999875 45666654 555443221                                       22445566


Q ss_pred             HHHHHHHHhccC--c-------------eeEEEEecccHHHHHHHHHHHHCCcEEeecCC--------C-----------
Q psy11784        192 KYLVRPLGINLH--I-------------FWCLILLSITYYLYRYTRRMKEAKIIVANEGE--------Y-----------  237 (284)
Q Consensus       192 ~~l~~~L~~~~G--~-------------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--------~-----------  237 (284)
                      +++.+.|+++.+  .             ++.+.+ +.......+.+.|.++||.++...+        +           
T Consensus       262 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~  340 (377)
T 3ju7_A          262 EWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILC-PEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRT  340 (377)
T ss_dssp             HHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEEC-CTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHH
T ss_pred             HHHHHHhcCCCCccccccCCCCCcceEEEEEEEe-CChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHH
Confidence            677777765411  0             112222 2222377899999999998865321        0           


Q ss_pred             ----CCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        238 ----GNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       238 ----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                          ...||+......|++|++++++.|.+++..
T Consensus       341 ~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          341 NKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             HHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred             HHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence                136787666678999999999999887754

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=98.95  E-value=1.5e-08  Score=99.59  Aligned_cols=52  Identities=15%  Similarity=0.155  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        216 YLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       216 ~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      .+..+.+.|.++||++...+  .+.+|+.++..+|+++++.+++.|.++.+.+.
T Consensus       516 ~~~~l~~~L~e~GI~v~~~~--~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~  567 (730)
T 1c4k_A          516 PATIVANYLRDHGIIPEKSD--LNSILFLMTPAETPAKMNNLITQLLQLQRLIE  567 (730)
T ss_dssp             CHHHHHHHHHHTTCCCSEEC--SSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCcEEEECC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            46788999999999997643  57899999999999999999999999987764

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=98.91  E-value=1.1e-07  Score=88.08  Aligned_cols=169  Identities=11%  Similarity=0.030  Sum_probs=97.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcc----eecCCCcccCChhHHHHHHHHHHH--hCCEEEEecccccCccccCccccccccC
Q psy11784         77 AQAARNIMEAHRDNIATLICEP----VFVVHGAVVPPPGWLSLMYDYIHE--IGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Ep----v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      .+++++.+++ .+++.+|++|+    ..+..|.+.+    +++|.++|++  ||+++|+||+|..+..... ..     .
T Consensus       164 ~e~l~~~i~~-~~~tklV~i~~s~gyp~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~-p~-----~  232 (427)
T 3hvy_A          164 INTVKEELKK-DDSIKLIHIQRSTGYGWRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKE-PT-----D  232 (427)
T ss_dssp             HHHHHHHHHH-CTTEEEEEEESSCCSSSSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSC-GG-----G
T ss_pred             HHHHHHHhhC-CCCCEEEEEECCCCCCCCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCC-Cc-----c
Confidence            6778888763 24589999999    6666665544    9999999999  8999999999964311111 11     1


Q ss_pred             CCCcEE--EecccccCC--cceeEEEecHHHHHhchhhhh---H-------HHHHHHHHHHHHhccCceeEEEEecccHH
Q psy11784        151 AVPDII--TVGKPMGNG--MPIGAVITSRKIAESLNCLDD---N-------RPSGKYLVRPLGINLHIFWCLILLSITYY  216 (284)
Q Consensus       151 ~~pDiv--~~sK~l~~G--~p~gav~~~~~i~~~~~~l~~---~-------~~~~~~l~~~L~~~~G~~~~i~~~~~~~~  216 (284)
                      ...|++  +++|.++++  ...|++++++++++.+.....   +       ......+.+.|..+ .    .........
T Consensus       233 ~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~-~----~r~~~~~~~  307 (427)
T 3hvy_A          233 VGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA-P----HVTIEAVKG  307 (427)
T ss_dssp             GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH-H----HHHHHHHHH
T ss_pred             cCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH-H----HHHHHHHHH
Confidence            224665  678999875  345888889988876643000   0       00011111111110 0    000011234


Q ss_pred             HHHHHHHHHHCCcEEeecCCCC--C-EEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        217 LYRYTRRMKEAKIIVANEGEYG--N-VLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       217 ~~~~~~~l~~~Gv~~~~~~~~~--~-~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      +..+.+.|.+.|+-+.|.....  + .+.|..   -+++...++++.|...
T Consensus       308 a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l---~~~~~~~~f~~~l~~~  355 (427)
T 3hvy_A          308 AVFCARIMELAGFDVLPKYNDKRTDIIQAIKF---NDEKKLIDFIKGIQTA  355 (427)
T ss_dssp             HHHHHHHHHHTTCEEESCTTSCCSSSEEEEEC---SSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCeecCCCCCCCceEEEEEeC---CCHHHHHHHHHHhccc
Confidence            5566667777777665442110  1 344432   2677777888877663

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=98.88  E-value=2e-07  Score=86.29  Aligned_cols=95  Identities=11%  Similarity=0.120  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcc----eecCCCcccCChhHHHHHHHHHHH--hCCEEEEecccccCccccCccccccccC
Q psy11784         77 AQAARNIMEAHRDNIATLICEP----VFVVHGAVVPPPGWLSLMYDYIHE--IGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Ep----v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                      .+++++.+++ .+++.+|++++    ..+..|.+.+    +++|.++|++  ||+++|+||+|..+..... ..     .
T Consensus       164 ~e~l~~~l~~-~~~tklV~i~~s~~~p~nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~-p~-----~  232 (427)
T 3i16_A          164 LEEIEKVLKE-DESITLVHIQRSTGYGWRRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKE-PT-----D  232 (427)
T ss_dssp             HHHHHHHHHT-CTTEEEEEEECSCCSSSSCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSC-GG-----G
T ss_pred             HHHHHHHhhC-CCCCEEEEEEcCCCCCCCCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCC-cc-----c
Confidence            6778888863 14689999999    6666676654    9999999999  9999999999974311111 11     1


Q ss_pred             CCCcEE--EecccccCC--cceeEEEecHHHHHhch
Q psy11784        151 AVPDII--TVGKPMGNG--MPIGAVITSRKIAESLN  182 (284)
Q Consensus       151 ~~pDiv--~~sK~l~~G--~p~gav~~~~~i~~~~~  182 (284)
                      ...|++  +++|.++++  ...|++++++++++.+.
T Consensus       233 ~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~  268 (427)
T 3i16_A          233 VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTS  268 (427)
T ss_dssp             GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHH
T ss_pred             cCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHH
Confidence            234665  678999874  34688889999887664

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.88  E-value=5.9e-08  Score=89.66  Aligned_cols=188  Identities=12%  Similarity=0.087  Sum_probs=120.5

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-CCc
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-VPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~pD  154 (284)
                      .+.++++|++++ +.+++|++.|-.-.++....    +++|.++|++||+++++||+|-+.-+... .+..+.+.. ..|
T Consensus       202 ~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~-~lp~sA~~~GrAD  276 (501)
T 3hl2_A          202 LKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCM-HLIQQGARVGRID  276 (501)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHH-HHHHHHHHHSCCC
T ss_pred             HHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhh-hhHHHHHhcCCCc
Confidence            688999998775 44888887764332233344    99999999999999999999965422111 111111222 589


Q ss_pred             EEEec--ccccCCcceeE-EE-e-cHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        155 IITVG--KPMGNGMPIGA-VI-T-SRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 iv~~s--K~l~~G~p~ga-v~-~-~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +++.|  |.+-  .|+|. ++ . .++.++.+..                             +++..++.++|++.|++
T Consensus       277 ~vVqS~HK~ll--vpIGG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~  354 (501)
T 3hl2_A          277 AFVQSLDKNFM--VPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKK  354 (501)
T ss_dssp             EEEEEHHHHHC--CCSSCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccccce--eecCceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877  5542  24433 33 3 4455554432                             44667788889999888


Q ss_pred             c---cC----------ceeEEEEec----ccHHHHHHHHHHHHCCc---EEeecCC-------------------CCCEE
Q psy11784        201 N---LH----------IFWCLILLS----ITYYLYRYTRRMKEAKI---IVANEGE-------------------YGNVL  241 (284)
Q Consensus       201 ~---~G----------~~~~i~~~~----~~~~~~~~~~~l~~~Gv---~~~~~~~-------------------~~~~l  241 (284)
                      +   .|          .-+++.+..    .......+...|+.++|   -+.+.+.                   -..++
T Consensus       355 la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl  434 (501)
T 3hl2_A          355 LSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYL  434 (501)
T ss_dssp             HHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEE
T ss_pred             HHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHH
Confidence            7   11          223444431    12245678888888865   3322211                   12478


Q ss_pred             EEEcCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        242 LFLPAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       242 r~~p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      -..-.+-++++|||.++++|++++.++.++
T Consensus       435 ~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~  464 (501)
T 3hl2_A          435 NAASAIGMKMQDVDLFIKRLDRCLKAVRKE  464 (501)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            888888899999999999999999988654

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=98.82  E-value=2.4e-07  Score=85.86  Aligned_cols=190  Identities=8%  Similarity=-0.015  Sum_probs=116.6

Q ss_pred             HHHHHHHHHhcC-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-CCc
Q psy11784         77 AQAARNIMEAHR-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-VPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~pD  154 (284)
                      .+.|+++|++++ +.+++|++-|-....|..-+    +++|.++|++||++|++||+|.+.-+... .+..+.+.. ..|
T Consensus       184 ~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~-~l~~~a~~~~~AD  258 (450)
T 3bc8_A          184 LKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCM-HLIQQGARVGRID  258 (450)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHH-HHHHHHHHHSCCC
T ss_pred             HHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhhH-hHHHHHhcccCCC
Confidence            788999998665 35888888775444445555    99999999999999999999975422211 011011111 468


Q ss_pred             EEEec--ccccCCcceeEEEe-cHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhcc
Q psy11784        155 IITVG--KPMGNGMPIGAVIT-SRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGINL  202 (284)
Q Consensus       155 iv~~s--K~l~~G~p~gav~~-~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~~  202 (284)
                      ++++|  |.+..-+..+.+.. .++..+.+..                             +++..++.+++++.|+++.
T Consensus       259 ~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~  338 (450)
T 3bc8_A          259 AFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLA  338 (450)
T ss_dssp             EEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCccCCCchhccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            88776  77765445566665 3444333222                             1122556677787777652


Q ss_pred             ---Cce------e----EEEEe----cccHHHHHHHHHHHHCCc---EEe-------------ec------CCCCCEEEE
Q psy11784        203 ---HIF------W----CLILL----SITYYLYRYTRRMKEAKI---IVA-------------NE------GEYGNVLLF  243 (284)
Q Consensus       203 ---G~~------~----~i~~~----~~~~~~~~~~~~l~~~Gv---~~~-------------~~------~~~~~~lr~  243 (284)
                         |..      .    .+.+.    ....+..++.-.+...|+   -+.             ..      -...+.+-+
T Consensus       339 ~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~  418 (450)
T 3bc8_A          339 EAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNA  418 (450)
T ss_dssp             HHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEE
T ss_pred             HhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEE
Confidence               431      1    12111    001234566666666652   222             00      123457778


Q ss_pred             EcCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        244 LPAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       244 ~p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      ..++..+++|++.++++|+++.++..++
T Consensus       419 ~~sig~~~~di~~l~~~L~~~~~~~~~~  446 (450)
T 3bc8_A          419 AAAIGMKMQDVDLFIKRLDKCLNIVRKE  446 (450)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            8888999999999999999998776543

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=98.82  E-value=6.3e-08  Score=86.79  Aligned_cols=158  Identities=13%  Similarity=0.082  Sum_probs=104.2

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE--EecccccC-C
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII--TVGKPMGN-G  165 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv--~~sK~l~~-G  165 (284)
                      +++.+|++-+..+..|....+   +++|      ||+++|+||+|. +|..   .....  ..  |++  +++|.++. |
T Consensus       141 ~~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~---~~~~~--~~--d~~~~s~~K~~g~~G  203 (362)
T 2c0r_A          141 DNAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR---PFDLN--QF--GLVYAGAQKNLGPSG  203 (362)
T ss_dssp             TTEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS---CCCGG--GC--SEEEEETTTTTCCSS
T ss_pred             CCcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhh-ccCC---ccchh--HC--cEEEEeccccccCcC
Confidence            457778777667778875322   4444      899999999997 3211   11111  12  765  56899962 4


Q ss_pred             cceeEEEecHHHHHhch----------------h----------------h-------------hhHHHHHHHHHHHHHh
Q psy11784        166 MPIGAVITSRKIAESLN----------------C----------------L-------------DDNRPSGKYLVRPLGI  200 (284)
Q Consensus       166 ~p~gav~~~~~i~~~~~----------------~----------------l-------------~~~~~~~~~l~~~L~~  200 (284)
                        +|++++++++.+.+.                .                +             ++.+++.+++.+.|++
T Consensus       204 --~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  281 (362)
T 2c0r_A          204 --VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ  281 (362)
T ss_dssp             --CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence              789999888754431                0                1             1344455666666665


Q ss_pred             ccC-c-------------eeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        201 NLH-I-------------FWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       201 ~~G-~-------------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      + | +             ++.+.+ +......++++.|.++||.+.++....+.+|+++....|++|++++++.|+++++
T Consensus       282 ~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~  359 (362)
T 2c0r_A          282 S-GGFYRGCVDVDSRSDMNITFRL-ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKR  359 (362)
T ss_dssp             S-TTSSEESSCGGGBCSSEEEEEC-SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             c-CCccccCCChHHcCCcEEEEEc-CCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            3 3 2             112222 2234567899999999998877544456799998888899999999999998876


Q ss_pred             H
Q psy11784        267 S  267 (284)
Q Consensus       267 ~  267 (284)
                      +
T Consensus       360 ~  360 (362)
T 2c0r_A          360 S  360 (362)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=98.75  E-value=1.7e-07  Score=92.58  Aligned_cols=50  Identities=18%  Similarity=0.106  Sum_probs=42.4

Q ss_pred             HHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        218 YRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       218 ~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      ..+.+.|.++||.+...  ..+.+|+.+++..|+++++.+++.|.++.+...
T Consensus       557 ~~l~~~L~~~gI~~e~~--~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~  606 (755)
T 2vyc_A          557 ALVTAWLGRHGIVPTRT--TDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYD  606 (755)
T ss_dssp             HHHHHHHHTTTCCCSEE--CSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEeec--CCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence            67888888899988654  357899999999999999999999998877654

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=98.71  E-value=7.7e-08  Score=87.67  Aligned_cols=159  Identities=11%  Similarity=0.014  Sum_probs=96.0

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHH-hC--CEEEEecccccCccccCccccccccCCCCcEEEeccccc-CC
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE-IG--GVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMG-NG  165 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~-~g--~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~-~G  165 (284)
                      ++.+|++...++..|.+..      +|   |++ |+  +++|.||+|. ++.. . .+.. ..+..--+-+|||.++ .|
T Consensus       157 ~~k~v~l~~p~NPtG~~~~------~l---~~~~~~~~~~ii~De~y~-~~~~-~-~l~~-~~~~~i~~~S~SK~~g~~G  223 (391)
T 3bwn_A          157 GPYIELVTSPNNPDGTIRE------TV---VNRPDDDEAKVIHDFAYY-WPHY-T-PITR-RQDHDIMLFTFSKITGHAG  223 (391)
T ss_dssp             SCEEEEEESSCTTTCCCCC------CC---C-----CCCEEEEECTTC-STTT-S-CCCC-CBCCSEEEEEHHHHHSCGG
T ss_pred             CCEEEEECCCCCCCchhHH------HH---HHHhhcCCCEEEEeCCCC-CCCC-C-cccc-CCCCeEEEEechhhcCCCc
Confidence            4666766444666776652      23   434 66  9999999996 2211 1 1111 1222222347899997 68


Q ss_pred             cceeEEEe-cHHHHHhchh--------------------hh---------------------hHHHHHHHHHHHHHhccC
Q psy11784        166 MPIGAVIT-SRKIAESLNC--------------------LD---------------------DNRPSGKYLVRPLGINLH  203 (284)
Q Consensus       166 ~p~gav~~-~~~i~~~~~~--------------------l~---------------------~~~~~~~~l~~~L~~~~G  203 (284)
                      +++|++++ ++++++.+..                    ++                     .++++.+++.+.|+++.|
T Consensus       224 lRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  303 (391)
T 3bwn_A          224 SRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDA  303 (391)
T ss_dssp             GCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             cceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999997 8888776544                    11                     122344455555554311


Q ss_pred             ----------------------ceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC---CCEEEEEcCCCCCHHHHHHHH
Q psy11784        204 ----------------------IFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY---GNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       204 ----------------------~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---~~~lr~~p~l~~t~~~id~~~  258 (284)
                                            +++++.+ +..   ..+.+.|.++||.+.++..+   .+.+|++..  .+++++++++
T Consensus       304 ~~~~~p~~~~~~f~~~~~~~~g~~~~~~~-~~~---~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~  377 (391)
T 3bwn_A          304 FTLPKYPEAFCNYFGKSLESYPAFAWLGT-KEE---TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFL  377 (391)
T ss_dssp             EECCCCCCEEETTTTEEECCCCSEEEEEE-SSS---CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHH
T ss_pred             cccccCCccccccccccCCCcceEEEecC-CcH---HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHH
Confidence                                  1344555 221   34556677899999987544   468999765  4899999999


Q ss_pred             HHHHHHHHH
Q psy11784        259 STLNRIFTS  267 (284)
Q Consensus       259 ~~l~~~l~~  267 (284)
                      ++|.+++++
T Consensus       378 ~~L~~~~~~  386 (391)
T 3bwn_A          378 ERLANMKLI  386 (391)
T ss_dssp             HHHHSCC--
T ss_pred             HHHHHHHHh
Confidence            999887654

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=98.36  E-value=1.4e-05  Score=78.26  Aligned_cols=180  Identities=13%  Similarity=0.165  Sum_probs=109.7

Q ss_pred             HHHHHHHHHhcCCC---eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc-cc--ccC
Q psy11784         77 AQAARNIMEAHRDN---IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA-FQ--TQG  150 (284)
Q Consensus        77 ~~~l~~~i~~~~~~---vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a-~~--~~g  150 (284)
                      .++|++.++++++.   .+.|++.|  +..|...+    +++|.++|++++  +|+||+|.+.-..|. .+. ..  ..+
T Consensus       282 ~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livDEAH~~~~~f~~-~~~~~~al~~g  352 (715)
T 3n75_A          282 HATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSP-IYEGKCGMSGG  352 (715)
T ss_dssp             HHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEECTTCTTGGGSG-GGTTSSTTSSS
T ss_pred             HHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEccccccccccCC-ccccccccccC
Confidence            67888888754321   25677788  77888887    999999998774  799999973212222 111 11  122


Q ss_pred             CCCcEE-----EecccccCCc-ceeEEEecHHHH-Hhchh---------------------------------hhhHHHH
Q psy11784        151 AVPDII-----TVGKPMGNGM-PIGAVITSRKIA-ESLNC---------------------------------LDDNRPS  190 (284)
Q Consensus       151 ~~pDiv-----~~sK~l~~G~-p~gav~~~~~i~-~~~~~---------------------------------l~~~~~~  190 (284)
                      ..+|++     +++|++++ + ..|++.++.++. +.+..                                 ++++.++
T Consensus       353 ~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~  431 (715)
T 3n75_A          353 RVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIER  431 (715)
T ss_dssp             CCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            236754     56799875 2 236666654321 11111                                 2244556


Q ss_pred             HHHHHHHHHhcc----Cce--------------eE-------------------EE-----Ee-cc----------cHHH
Q psy11784        191 GKYLVRPLGINL----HIF--------------WC-------------------LI-----LL-SI----------TYYL  217 (284)
Q Consensus       191 ~~~l~~~L~~~~----G~~--------------~~-------------------i~-----~~-~~----------~~~~  217 (284)
                      .++++++|+++.    |.+              +.                   ++     +. +.          .-.+
T Consensus       432 a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g  511 (715)
T 3n75_A          432 AIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPA  511 (715)
T ss_dssp             HHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCH
T ss_pred             HHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcH
Confidence            667777776642    211              00                   11     10 11          1134


Q ss_pred             HHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        218 YRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       218 ~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      ..+.+.|.++||.+--..  .+.+-+..+...|+++++.++++|.++-+..
T Consensus       512 ~~~~~~L~~~~I~~E~~d--~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~  560 (715)
T 3n75_A          512 SIVAKYLDEHGIVVEKTG--PYNLLFLFSIGIDKTKALSLLRALTDFKRAF  560 (715)
T ss_dssp             HHHHHHHHHTTCCCSEEE--TTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEEecC--CCcEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            577888888999887543  4667777788889999999999998776544

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=98.35  E-value=4.1e-06  Score=76.16  Aligned_cols=163  Identities=10%  Similarity=0.015  Sum_probs=101.7

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecccccCCcce
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPI  168 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~~G~p~  168 (284)
                      +++..|.+--.-...|.+.|    +     +|+++|+++++|=+|+ +|..   .+-.+.+++  ...+--|.+| .-.+
T Consensus       151 ~~t~lV~~~h~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~~---~id~~~~~~--~~~s~~K~~g-p~G~  214 (377)
T 3e77_A          151 PDASYVYYCANETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLSK---PVDVSKFGV--IFAGAQKNVG-SAGV  214 (377)
T ss_dssp             TTCSCEEEESEETTTTEECS----S-----CCCCTTCCEEEECTTT-TTSS---CCCGGGCSE--EEEEGGGTTS-CTTC
T ss_pred             CCccEEEEeCccCchheEch----h-----hhccCCCEEEEEcccc-cCCC---CCchhhcCE--EEEecccccC-CCcc
Confidence            44555544344444577766    2     4789999999999997 4321   233344442  2222338883 3347


Q ss_pred             eEEEecHHHHHhchh---------------------------------------------hhhHHHHHHHHHHHHHhccC
Q psy11784        169 GAVITSRKIAESLNC---------------------------------------------LDDNRPSGKYLVRPLGINLH  203 (284)
Q Consensus       169 gav~~~~~i~~~~~~---------------------------------------------l~~~~~~~~~l~~~L~~~~G  203 (284)
                      |+++.++++.+.+..                                             .++.+++.+++.+.|+++.|
T Consensus       215 g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g  294 (377)
T 3e77_A          215 TVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQG  294 (377)
T ss_dssp             EEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             EEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            777777765322110                                             12455667778888876523


Q ss_pred             ce-------------eEEEEec---ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        204 IF-------------WCLILLS---ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       204 ~~-------------~~i~~~~---~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +.             +.+.+..   +......+...+.++||.+.++....+.+|+++....|++|||.+++.|++++++
T Consensus       295 ~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          295 FYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             SEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            32             3344421   1122246778888999998765333356999999999999999999999988764

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.25  E-value=3.6e-05  Score=69.49  Aligned_cols=159  Identities=11%  Similarity=0.030  Sum_probs=100.6

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCCc
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNGM  166 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G~  166 (284)
                      +++..|.+--.-...|.+.+.         +|+ +|+++++|-+|+ +|..   .+-.+    ..|++++|  |.+| .-
T Consensus       139 ~~t~lv~~~~~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~---~id~~----~~d~~~~s~~K~~g-p~  199 (361)
T 3m5u_A          139 DNADYAYICSNNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR---KVDFS----NIALFYGGVQKNAG-IS  199 (361)
T ss_dssp             TTSSEEEEESEETTTTEECSS---------CCC-CSSCEEEECGGG-TTSS---CCCCT----TEEEEEEETTTTSS-CT
T ss_pred             CCCCEEEEeCCCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCC---CCCcc----cCCEEEEechhccC-CC
Confidence            345555543333445776442         344 499999999997 4321   12222    25787776  9883 33


Q ss_pred             ceeEEEecHHHHHhchh----------------------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        167 PIGAVITSRKIAESLNC----------------------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       167 p~gav~~~~~i~~~~~~----------------------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      .+|+++.++++.+.+..                                              .++.+++.+++.++|++
T Consensus       200 G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~  279 (361)
T 3m5u_A          200 GLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL  279 (361)
T ss_dssp             TCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence            48899999887643210                                              12455667777788876


Q ss_pred             ccCc-------------eeEEEEecc-cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        201 NLHI-------------FWCLILLSI-TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       201 ~~G~-------------~~~i~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      +.|+             .+.+.+ +. ......+...|.++||.+.++...-+.+|+++....|++|||.+++.|+++.+
T Consensus       280 ~~g~~~~~~~~~~rs~~ivsf~~-~~~~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~  358 (361)
T 3m5u_A          280 SNGFYKGHADKKDRSLMNVSFNI-AKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQG  358 (361)
T ss_dssp             STTSEEESSCGGGBCSSEEEEEE-SSCTTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCeeeccCCHHHcCCeEEEEEC-CCchhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            4223             223333 22 11224677888899999876532225699999999999999999999998875


Q ss_pred             H
Q psy11784        267 S  267 (284)
Q Consensus       267 ~  267 (284)
                      +
T Consensus       359 ~  359 (361)
T 3m5u_A          359 K  359 (361)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=98.22  E-value=1.5e-05  Score=72.64  Aligned_cols=161  Identities=13%  Similarity=-0.020  Sum_probs=100.4

Q ss_pred             CCeeEEEEcceecCCCcc-cCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecccccCCcc
Q psy11784         89 DNIATLICEPVFVVHGAV-VPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMP  167 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~-~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~~G~p  167 (284)
                      +++..|.+--.....|.+ .|    +++|   +  +|+++++|=+|+ +|..   .+-.+.+++  +..+--|.+| ...
T Consensus       165 ~~t~lV~~~h~et~tG~~i~p----i~~i---~--~g~~~~vDa~qs-~g~~---pidv~~~~~--~~~s~hK~lG-P~G  228 (386)
T 3qm2_A          165 DNAAYLHYCPNETIDGIAIDE----TPDF---G--PEVVVTADFSST-ILSA---PLDVSRYGV--IYAGAQKNIG-PAG  228 (386)
T ss_dssp             TTCSCEEECSEETTTTEECCC----CCCC---C--TTCCEEEECTTT-TTSS---CCCGGGCSE--EEEETTTTTC-CTT
T ss_pred             CCCcEEEEECCcCCcCEecCc----hhhh---c--CCCEEEEEcccc-cCCC---CCCccccCE--EEEecccccC-CCc
Confidence            445556665666666875 44    3333   2  899999999997 4321   233344442  3333348883 334


Q ss_pred             eeEEEecHHHHHhchh--------------------------------h-------------hhHHHHHHHHHHHHHhcc
Q psy11784        168 IGAVITSRKIAESLNC--------------------------------L-------------DDNRPSGKYLVRPLGINL  202 (284)
Q Consensus       168 ~gav~~~~~i~~~~~~--------------------------------l-------------~~~~~~~~~l~~~L~~~~  202 (284)
                      +|+++.++++.+.+..                                +             ++.+++.+++.+.|+++ 
T Consensus       229 ~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-  307 (386)
T 3qm2_A          229 LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-  307 (386)
T ss_dssp             EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-
Confidence            7888888776321110                                1             14455667777777764 


Q ss_pred             Cc-------------eeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        203 HI-------------FWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       203 G~-------------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      |+             .+.+.+ +.......+...|.++||.+..+....+.+|+++....|++|||.+++.|+++.++
T Consensus       308 ~~~~~~~~~~~rs~~iv~f~~-~~~~~~~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          308 DFYRNDVAQANRSRMNVPFQL-ADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR  384 (386)
T ss_dssp             SSEECCBCGGGBCSSEEEEEE-SSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCHHHcCceEEEEEC-CCccccHHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence            32             233344 22122256777888999998764222245999999889999999999999988754

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=98.17  E-value=1.8e-05  Score=72.85  Aligned_cols=155  Identities=13%  Similarity=0.036  Sum_probs=95.5

Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE--Eeccccc-CCc
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII--TVGKPMG-NGM  166 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv--~~sK~l~-~G~  166 (284)
                      ++.+|++...++..|.+..  +.+       +  ++..|.||++-.     . ...........+++  +|||.++ .|+
T Consensus       196 ~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~-----~-~~s~~~~~~~~~i~~~S~SK~~g~~G~  258 (427)
T 2hox_A          196 EQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW-----P-HYTPIKYKADEDILLFTMSKFTGHSGS  258 (427)
T ss_dssp             GGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS-----T-TTSCCCSCBCCSEEEEEHHHHTSCGGG
T ss_pred             CceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC-----C-CCCccccCCCceEEEEeChhcCCCCCc
Confidence            4566666544566676554  322       2  566788877632     1 11111111123444  6899998 689


Q ss_pred             ceeEEEe-cHHHHHhchh--------------------hh----------------------hHHHHHHHHHHHHHhcc-
Q psy11784        167 PIGAVIT-SRKIAESLNC--------------------LD----------------------DNRPSGKYLVRPLGINL-  202 (284)
Q Consensus       167 p~gav~~-~~~i~~~~~~--------------------l~----------------------~~~~~~~~l~~~L~~~~-  202 (284)
                      ++|++++ ++++++.+..                    ++                      +++++.+++.+.|++.. 
T Consensus       259 RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  338 (427)
T 2hox_A          259 RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDR  338 (427)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred             eEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            9999999 4888776644                    11                      12333445555555421 


Q ss_pred             ----------------------CceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC---CCEEEEEcCCCCCHHHHHH
Q psy11784        203 ----------------------HIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY---GNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       203 ----------------------G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~---~~~lr~~p~l~~t~~~id~  256 (284)
                                            |+++++.+. .  ...++++.|+ ++||++.++..+   .+++|++..  .+++++++
T Consensus       339 ~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~-~--~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~  413 (427)
T 2hox_A          339 FSYQELPQSEYCNYFRRMRPPSPSYAWVKCE-W--EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLI--KTQDDFDQ  413 (427)
T ss_dssp             EECCCCCSCEEETTTTEEECCCCSEEEEEEC-S--GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECS--SCHHHHHH
T ss_pred             ccccccccccccccccccCCCCceEEEEECC-C--cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEec--CCHHHHHH
Confidence                                  445556663 2  2345777765 789999987543   468999765  48999999


Q ss_pred             HHHHHHHHHH
Q psy11784        257 IVSTLNRIFT  266 (284)
Q Consensus       257 ~~~~l~~~l~  266 (284)
                      ++++|.++++
T Consensus       414 ~l~~l~~~~~  423 (427)
T 2hox_A          414 LMYYLKDMVK  423 (427)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988763

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=97.76  E-value=0.0015  Score=60.19  Aligned_cols=177  Identities=11%  Similarity=0.041  Sum_probs=110.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+.++++..++++.+  ||+-      +...+-.--+++++++|++.|++|++|=+|. |+=-.|.  +. ..+.. .|+
T Consensus       192 yd~~~~~A~~~kPkl--Ii~G------~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~--~p-sP~~~-ADv  259 (490)
T 3ou5_A          192 YNQLALTARLFRPRL--IIAG------TSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKV--IP-SPFKH-ADI  259 (490)
T ss_dssp             HHHHHHHHHHHCCSE--EEEC------CSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTS--SC-CGGGT-CSE
T ss_pred             HHHHHHHHhhcCCCe--EEEC------CccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccc--cC-Ccccc-ceE
Confidence            577888777666663  3322      2122222238999999999999999999986 5411121  11 12222 689


Q ss_pred             EEec--ccccCCcceeEEEecH---------------HHHHhchh---------------------------------hh
Q psy11784        156 ITVG--KPMGNGMPIGAVITSR---------------KIAESLNC---------------------------------LD  185 (284)
Q Consensus       156 v~~s--K~l~~G~p~gav~~~~---------------~i~~~~~~---------------------------------l~  185 (284)
                      ||.+  |.|.|- +-|.+++++               ++.+.+..                                 .+
T Consensus       260 VTtTTHKTLrGP-rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~  338 (490)
T 3ou5_A          260 VTTTTHKTLRGA-RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL  338 (490)
T ss_dssp             EEEESSSTTCSC-SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             EeccccccccCC-CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHH
Confidence            8765  999861 235566554               22222221                                 23


Q ss_pred             hHHHHHHHHHHHHHhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-------CCCCEEEEEcCCC-
Q psy11784        186 DNRPSGKYLVRPLGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-------EYGNVLLFLPAMC-  248 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~lr~~p~l~-  248 (284)
                      ++.++++.|.+.|.+.         ...++.+++.+.........+.|-+.||.+....       ...+-|||-.|.. 
T Consensus       339 qVv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~T  418 (490)
T 3ou5_A          339 QVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALT  418 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHH
Confidence            6667777888888775         2235566664433345666677778899886321       1235789876654 


Q ss_pred             ---CCHHHHHHHHHHHHHHHH
Q psy11784        249 ---LTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       249 ---~t~~~id~~~~~l~~~l~  266 (284)
                         +.++|++++.+.|.+++.
T Consensus       419 tRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          419 SRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHH
Confidence               578999999999988775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	284
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	2e-27
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	2e-24
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	3e-21
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	2e-20
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	7e-20
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	4e-14
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	4e-10
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	1e-07
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	5e-05
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	6e-05

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score =  107 bits (268), Expect = 2e-27
 Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 10/240 (4%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDT 60
           +EA    L+L RAYTGR  I+  +  YHG  +         F++ +        +P    
Sbjct: 118 TEACMAVLRLMRAYTGRDKIIKFEGCYHGHAD--------MFLVKAGSGVATLGLPSSPG 169

Query: 61  YRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI 120
              + +A+         +A + +   +   IA +I EP+    G +VP  G+L  + +  
Sbjct: 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT 229

Query: 121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAES 180
            E   +++ DE+  G     ++    +  G  PD+ T+GK +G G+P+GA    R+I + 
Sbjct: 230 LEHDALLVFDEVMTGFRI--AYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQL 287

Query: 181 LNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNV 240
           +        +G     PL +   I    +L     Y Y      + +  ++A   E G+ 
Sbjct: 288 VAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHA 347

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score = 99.0 bits (246), Expect = 2e-24
 Identities = 66/303 (21%), Positives = 105/303 (34%), Gaps = 62/303 (20%)

Query: 2   EANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPD 59
           EAN+ AL+ ARA+TGR+  V     + G     L ++               V  IP+ D
Sbjct: 107 EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYND 166

Query: 60  TYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDY 119
                                  +  A  +  A +I EPV    G     P +L    + 
Sbjct: 167 --------------------VEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREI 206

Query: 120 IHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAE 179
             E G ++I DEIQ GMGR+G  F  F+  G VPDI+T+ K +G G+P+G  +   ++A 
Sbjct: 207 TQEKGALLILDEIQTGMGRTGKRFA-FEHFGIVPDILTLAKALGGGVPLGVAVMREEVAR 265

Query: 180 SLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYR-------------------- 219
           S+         G   +        I +                                 
Sbjct: 266 SMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVR 325

Query: 220 -----------------YTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLN 262
                              R  KE +++    G    V+ FLP + +  E++  +V  + 
Sbjct: 326 GMGLMVGLELKEKAAPYIARLEKEHRVLALQAG--PTVIRFLPPLVIEKEDLERVVEAVR 383

Query: 263 RIF 265
            + 
Sbjct: 384 AVL 386

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 90.2 bits (223), Expect = 3e-21
 Identities = 44/264 (16%), Positives = 82/264 (31%), Gaps = 52/264 (19%)

Query: 51  WVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD-NIATLICEPVFVVHGAVVPP 109
                         F    PQ ++        + E  +D N+   I EP+    G +VP 
Sbjct: 146 GCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPS 205

Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPI 168
             +L  +YD   +   + +ADE+Q G+GR+             PD+I +GK +  G  PI
Sbjct: 206 DNYLQGVYDICKKYNVLFVADEVQTGLGRT-GKLLCVHHYNVKPDVILLGKALSGGHYPI 264

Query: 169 GAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYY------------ 216
            AV+ +  I      +        Y   PL  ++ +    +L++                
Sbjct: 265 SAVLANDDIM---LVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLE 321

Query: 217 --------------------------------LYRYTRRMKEAKIIVANEGEYGNVLLFL 244
                                           +     ++KE  +I      +   +   
Sbjct: 322 NLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITR--DVHDKTIRLT 379

Query: 245 PAMCLTTENVLFIVSTLNRIFTSL 268
           P +C+T E +      + +     
Sbjct: 380 PPLCITKEQLDECTEIIVKTVKFF 403

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 88.4 bits (218), Expect = 2e-20
 Identities = 54/306 (17%), Positives = 99/306 (32%), Gaps = 51/306 (16%)

Query: 12  RAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQ 71
           RA T R   +    AYHG  +  L ++ +    S+        +             +  
Sbjct: 122 RAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDD 181

Query: 72  AAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADE 131
           A     +  +N      ++IA ++ EPV    G     P ++  +     E G ++IADE
Sbjct: 182 AIASIHRIFKNDA--APEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE 239

Query: 132 IQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAES----------- 180
           +Q G GR+    +A +  G  PD+ T  K +  G P+  V    ++ ++           
Sbjct: 240 VQSGAGRT-GTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYA 298

Query: 181 ------------LNCLDDNRPSGKYL----------------------VRPLGINLHIFW 206
                       L   +      K                        VR LG  + I  
Sbjct: 299 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIEL 358

Query: 207 CLILLSITYYLYRYTRRMKEAK---IIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR 263
                            +  A+   +I+ + G Y NVL  L  + +    +   +  +++
Sbjct: 359 FEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQ 418

Query: 264 IFTSLQ 269
            F   +
Sbjct: 419 CFDEAK 424

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (213), Expect = 7e-20
 Identities = 48/262 (18%), Positives = 85/262 (32%), Gaps = 50/262 (19%)

Query: 50  PWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPP 109
             +     P +Y G            Y             N+A  + EP+    G VVP 
Sbjct: 148 SAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPD 207

Query: 110 PGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNG-MPI 168
           PG+L  + +       + IADEIQ G+ R+   + A   +   PDI+ +GK +  G  P+
Sbjct: 208 PGYLMGVRELCTRHQVLFIADEIQTGLART-GRWLAVDYENVRPDIVLLGKALSGGLYPV 266

Query: 169 GAVITSRKIAESLNCLDDNRPSGKYLVRPLG-----INLHIFWCLILLSITYYLYRYTR- 222
            AV+    I      +        Y   PLG       L +     L      L    R 
Sbjct: 267 SAVLCDDDIML---TIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 323

Query: 223 -------------------------------------RMKEAKIIVANEGEYGNVLLFLP 245
                                                R+++  ++   +  +G+++ F P
Sbjct: 324 ELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLA--KPTHGDIIRFAP 381

Query: 246 AMCLTTENVLFIVSTLNRIFTS 267
            + +  + +   +  +N+   S
Sbjct: 382 PLVIKEDELRESIEIINKTILS 403

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score = 69.7 bits (169), Expect = 4e-14
 Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 3/193 (1%)

Query: 1   SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPW--VHVIPFP 58
           +E+N+ A+++A+  TG+  IV    ++HG        +  A              +    
Sbjct: 110 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPF 169

Query: 59  DTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYD 118
                           +   A   I      N+A  I EP+    G +  P G+++ +  
Sbjct: 170 TYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKR 229

Query: 119 YIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIA 178
                G ++I DE Q G+GR+G+ F   Q  G  PDI+T+ K +G G+P+ A++TS  I 
Sbjct: 230 KCEARGMLLILDEAQTGVGRTGTMFA-CQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIE 288

Query: 179 ESLNCLDDNRPSG 191
           E  + L     + 
Sbjct: 289 ERAHELGYLFYTT 301

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score = 57.7 bits (138), Expect = 4e-10
 Identities = 52/292 (17%), Positives = 98/292 (33%), Gaps = 45/292 (15%)

Query: 14  YTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAA 73
              RQ  +     YHG     + +      + S  K ++    F    +      D +  
Sbjct: 131 GEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRM---DGEWD 187

Query: 74  QKYAQAARNIMEAHRDNIATLICEPVFVVHGA-VVPPPGWLSLMYDYIHEIGGVVIADEI 132
           ++       +M AHR  IA +I EP+    G   +  P WL  +       G ++IADEI
Sbjct: 188 ERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEI 247

Query: 133 QCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNCLDD------ 186
             G GR+G  F     + A   +       G  M + A +T+R++AE+++  +       
Sbjct: 248 ATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHG 307

Query: 187 -----NRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----- 236
                N  +       L I     W   +  I   L       ++A+++           
Sbjct: 308 PTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGV 367

Query: 237 -------------------------YGNVLLFLPAMCLTTENVLFIVSTLNR 263
                                    +G ++  +P   +  + +  + + +NR
Sbjct: 368 VETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNR 419

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 49.9 bits (118), Expect = 1e-07
 Identities = 28/217 (12%), Positives = 56/217 (25%), Gaps = 24/217 (11%)

Query: 1   SEANDLALQLARAY---TGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPF 57
             A ++   +   Y    G+    V  + +H               ++            
Sbjct: 100 RGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINI-VTEKAFDSET 158

Query: 58  PDTYRGEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMY 117
            D ++G+F     +           I +   DNI  ++        G        L  +Y
Sbjct: 159 YDDWKGDFDIKKLKEN---------IAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY 209

Query: 118 DYIHEIGGVVIADEIQC------GMGRSGSHFWA-----FQTQGAVPDIITVGKPMGNGM 166
           +   + G  V+ D  +          R   +  A             D +T+       +
Sbjct: 210 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL 269

Query: 167 PIGAVITSRKIAESLNCLDDNRPSGKYLVRPLGINLH 203
            IG ++  R   E            +  V   G+   
Sbjct: 270 NIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGR 306

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 5e-05
 Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 29/235 (12%)

Query: 3   ANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYR 62
           +  L     R    +   ++       +         ++ + +  +   +  +   D  R
Sbjct: 125 SLTLCFLTLRHKRPKAKYIIWPRIDQKSC-------FKSMVTAGFEPVVIENVLEGDELR 177

Query: 63  GEFSADDPQAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHE 122
                 D +A +        I E   ++I  L                  L  +      
Sbjct: 178 T-----DLKAVEAK------IQELGPEHILCLHSTTACFAPRVPDR----LEELAVICAN 222

Query: 123 IGGVVIADEIQCGMGRSGSHF--WAFQTQGAVPDIITVGKPMGNGMPIGAVITS-----R 175
                + +           H      +       + ++ K     +    +        +
Sbjct: 223 YDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQ 282

Query: 176 KIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEAKII 230
            I++         PS   L+  L +    +  L+      ++Y  T+  K A+  
Sbjct: 283 DISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAH 337

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 38/339 (11%), Positives = 82/339 (24%), Gaps = 81/339 (23%)

Query: 2   EANDLALQLARAY--------------------------TGRQNIVVVDAAYHGTVNLLL 35
            +N+ A +    +                              +I+    A+HG     L
Sbjct: 128 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCL 187

Query: 36  DISPRAFMLSSEKKPWVHV------IPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD 89
             +    +   +   +         + +P     + +  +     +  +         + 
Sbjct: 188 ATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKK 247

Query: 90  NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-HFWAFQT 148
            +A +I EP+    G       +   + D   + G   + DE+Q G G +G         
Sbjct: 248 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWG 307

Query: 149 QGAVPDIITVGKPMGNGMPIG--------------------------------------- 169
                D++T  K M  G                                           
Sbjct: 308 LDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLL 367

Query: 170 --AVITSRKIAESLNCLDDNRPSGKYLVRPLGINLHIFWCLILLSITYYLYRYTRRMKEA 227
             A    + +   L  L    P     VR  G      +C           +     +  
Sbjct: 368 SNAAHAGKVLLTGLLDLQARYPQFISRVRGRG-----TFCSFDTPDESIRNKLISIARNK 422

Query: 228 KIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT 266
            +++   G     + F P +     +    ++  + I  
Sbjct: 423 GVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDILA 459

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	284
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	100.0
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.92
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.9
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.86
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.83
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.78
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.77
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.7
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.68
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.66
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.65
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.64
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.61
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.59
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.59
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.57
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.56
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.54
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.54
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.53
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.52
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.5
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.49
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.45
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.44
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.43
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.42
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.42
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.42
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.41
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.41
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.39
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.35
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.33
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.32
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.31
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.23
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.22
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.22
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.22
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.2
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.18
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.17
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.16
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.16
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.09
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.08
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.07
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.05
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.04
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.0
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	98.98
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	98.91
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	98.84
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	98.77
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	98.76
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	98.71
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	98.7
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	98.61
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	98.54
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	98.45
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.43
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	98.41
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	98.37
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	98.28
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.28
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	98.25
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	98.23
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	98.2
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	98.19
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	98.19
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	98.14
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	98.12
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.08
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	97.91
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	97.89
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	97.77
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	97.76
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	97.59

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-55  Score=406.68  Aligned_cols=261  Identities=24%  Similarity=0.358  Sum_probs=214.7

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc---CCCCCceEEccCCCCcCCCCCCCchHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS---SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYA   77 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (284)
                      |||||+|+|+||+||+|++||+|+++|||+|.+++++++......   ...+......+.|.......    ...   ..
T Consensus       111 seA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~  183 (425)
T d1sffa_         111 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGIS----EDD---AI  183 (425)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBC----HHH---HH
T ss_pred             cchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCcccccccc----chh---hH
Confidence            699999999999999999999999999999999998875432221   11222233333333211111    111   11


Q ss_pred             HHHHHHHH--hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         78 QAARNIME--AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        78 ~~l~~~i~--~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      ...++.+.  ...+++||||+|||||++|+++++++||+.|+++|++||++||+|||+|||||+|. +|+++++|+.|||
T Consensus       184 ~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~-~~a~~~~gv~PDi  262 (425)
T d1sffa_         184 ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMGVAPDL  262 (425)
T ss_dssp             HHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTTSCCSE
T ss_pred             HHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch-hhHHHhcCCCccc
Confidence            22223332  33455999999999999999999999999999999999999999999999999998 8999999999999


Q ss_pred             EEecccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        156 ITVGKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       156 v~~sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      +|+||+|+||+|+|++++++++++.+..                             +++++++++++++.|+++     
T Consensus       263 ~~~gK~l~gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~  342 (425)
T d1sffa_         263 TTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHP  342 (425)
T ss_dssp             EEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             eecccccCCCcceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCC
Confidence            9999999999999999999999998764                             458889999999998876     


Q ss_pred             -------cCceeEEEEec-------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLS-------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       202 -------~G~~~~i~~~~-------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                             .|+|+++++..       +......+.++|+++||++.+++..+++|||.||+++|++|||+++++|++++++
T Consensus       343 ~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~~l~~l~~al~e  422 (425)
T d1sffa_         343 EIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDE  422 (425)
T ss_dssp             TEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                   79999999962       3345678999999999999988888899999999999999999999999999998


Q ss_pred             Hh
Q psy11784        268 LQ  269 (284)
Q Consensus       268 ~~  269 (284)
                      +.
T Consensus       423 ik  424 (425)
T d1sffa_         423 AK  424 (425)
T ss_dssp             HC
T ss_pred             hc
Confidence            75

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=100.00  E-value=7.4e-55  Score=404.58  Aligned_cols=267  Identities=24%  Similarity=0.351  Sum_probs=217.5

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc-CCCCCceEEccCCCCcCCCCCCCchHHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS-SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQA   79 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
                      |||||+|||+||+||||++|++|+++|||+|.++++++....... .........++.|..++.............+++.
T Consensus       110 seA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (431)
T d1zoda1         110 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY  189 (431)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHH
Confidence            699999999999999999999999999999999998876543322 2223334445666554443322222222233455


Q ss_pred             HHHHHH-hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         80 ARNIME-AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        80 l~~~i~-~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      +.+.+. ..++++||||+|||||++|++++|++||++|+++|++||++||+|||+|||||+|+ +|+++++|++|||+|+
T Consensus       190 ~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~-~~~~~~~gv~PDi~~~  268 (431)
T d1zoda1         190 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT-MFACQRDGVTPDILTL  268 (431)
T ss_dssp             HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTCCCSEEEE
T ss_pred             HHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc-ccccccCCCCcchhcc
Confidence            555554 44566999999999999999999999999999999999999999999999999998 8999999999999999


Q ss_pred             cccccCCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc------
Q psy11784        159 GKPMGNGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN------  201 (284)
Q Consensus       159 sK~l~~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~------  201 (284)
                      ||+++||+|++++++++++++.+..                               ++++.++++++.+.++++      
T Consensus       269 gK~l~gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~  348 (431)
T d1zoda1         269 SKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDC  348 (431)
T ss_dssp             CHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccccccccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCC
Confidence            9999999999999999998876533                               458888999999988776      


Q ss_pred             ------cCceeEEEEe-------cccHHHHHHHHHHHHCCcEEee--cCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 ------LHIFWCLILL-------SITYYLYRYTRRMKEAKIIVAN--EGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 ------~G~~~~i~~~-------~~~~~~~~~~~~l~~~Gv~~~~--~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                            .|+|+++++.       +......++.+.|+++|++...  .+..+++|||.||+++|++|||+++++|+++++
T Consensus       349 i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~  428 (431)
T d1zoda1         349 IGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE  428 (431)
T ss_dssp             EEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                  7999999986       2234577899999999997532  234678999999999999999999999999998


Q ss_pred             HH
Q psy11784        267 SL  268 (284)
Q Consensus       267 ~~  268 (284)
                      ++
T Consensus       429 ~v  430 (431)
T d1zoda1         429 RA  430 (431)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.2e-53  Score=388.15  Aligned_cols=240  Identities=28%  Similarity=0.432  Sum_probs=207.3

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||||+|+|+||.||+|++|++|.+||||+|.+++++++......  .+....+.+.|+        ++         ++
T Consensus       106 seA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~--------~d---------~~  168 (387)
T d1vefa1         106 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY--------ND---------VE  168 (387)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT--------TC---------HH
T ss_pred             hHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC--------CC---------HH
Confidence            699999999999999999999999999999999999886532221  222233334443        33         56


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      .|++.++   +++||||+|||||++|+++++++||++|+++|++||++||+|||+|||||+|. +|+++++|++||++|+
T Consensus       169 ~l~~~~~---~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~-~~~~~~~~v~PDi~~~  244 (387)
T d1vefa1         169 ALKRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-RFAFEHFGIVPDILTL  244 (387)
T ss_dssp             HHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTCCCSEEEE
T ss_pred             HHHHhcC---CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC-CcccccCCcCCceeee
Confidence            7777664   67999999999999999999999999999999999999999999999999998 8999999999999999


Q ss_pred             cccccCCcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--------
Q psy11784        159 GKPMGNGMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--------  201 (284)
Q Consensus       159 sK~l~~G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--------  201 (284)
                      ||+++||+|++++++++++++.+..                             +++++++++++++.|+++        
T Consensus       245 gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~v~~v  324 (387)
T d1vefa1         245 AKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREV  324 (387)
T ss_dssp             CGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred             cccCCCCccccccccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhcCCCceEEE
Confidence            9999999999999999999987644                             458999999999999987        


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                        .|+|+++++..  .....+.+.++++|+++.+.  +++++||.||+++|++|||++++++++++
T Consensus       325 rg~Gl~~~ie~~~--~~~~~~~~~~~~~g~l~~~~--g~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         325 RGMGLMVGLELKE--KAAPYIARLEKEHRVLALQA--GPTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             EEETTEEEEEESS--CSHHHHHHHHHHHCEECEES--STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             eecceEEEEEEeC--CchHHHHHHHHHCCCeEEec--CCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence              79999999952  23456777888999998874  46899999999999999999999999887

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-52  Score=382.33  Aligned_cols=245  Identities=22%  Similarity=0.392  Sum_probs=210.5

Q ss_pred             CcHHHHHHHHHHHcc--------CCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCch
Q psy11784          1 SEANDLALQLARAYT--------GRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~~--------~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   70 (284)
                      |||||+|+|+||+++        +|.+|+++.++|||+|.++++.+.......  .+......++|+        ++   
T Consensus       108 seA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~--------~d---  176 (404)
T d2byla1         108 VEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY--------ND---  176 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT--------TC---
T ss_pred             cccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc--------cC---
Confidence            699999999999885        578999999999999999998876533221  112222333333        33   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         71 QAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                            ++++++.++  .+++||||+|||||++|+++++++||++|+++|++||++||+|||+|||||+|+ +|+++++|
T Consensus       177 ------~~~l~~~l~--~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~-~~a~~~~g  247 (404)
T d2byla1         177 ------LPALERALQ--DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-WLAVDYEN  247 (404)
T ss_dssp             ------HHHHHHHHT--STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT
T ss_pred             ------HHHHHHhcC--CCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc-cchhhhcC
Confidence                  678888885  456999999999999999999999999999999999999999999999999998 89999999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      ++|||+|+||+|+|| +|+|++++++++++.+..                             +++++++++++++.|++
T Consensus       248 v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~  327 (404)
T d2byla1         248 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMK  327 (404)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHHHHHHHh
Confidence            999999999999999 799999999999987764                             45889999999999998


Q ss_pred             c----------cCceeEEEEe-cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        201 N----------LHIFWCLILL-SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       201 ~----------~G~~~~i~~~-~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +          .|+|+++++. +....+.+++++|+++||++.+.  ++++|||.||+++|++|||+++++|++++.+
T Consensus       328 l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~--~~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         328 LPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT--HGDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             SCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEE--ETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             hccccceeeeecccEEEEEEecCCchhHHHHHHHHHhCCeEEecC--CCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence            7          8999999986 23345778999999999999874  3689999999999999999999999999864

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-51  Score=381.53  Aligned_cols=257  Identities=22%  Similarity=0.345  Sum_probs=211.4

Q ss_pred             CcHHHHHHHHHHHcc-----CCccEEEEcCCCcccchhhhcCCCCccccc---CCCCCceEEccCCCCcCCCCCCCchHH
Q psy11784          1 SEANDLALQLARAYT-----GRQNIVVVDAAYHGTVNLLLDISPRAFMLS---SEKKPWVHVIPFPDTYRGEFSADDPQA   72 (284)
Q Consensus         1 seA~e~AlklAr~~~-----~r~~il~~~~~yHG~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (284)
                      |||||+|+|+||+|+     ++++||+|+++|||+|.+++++++......   ..........|.+........+ ..  
T Consensus       113 seA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--  189 (429)
T d1s0aa_         113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWD-ER--  189 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCC-GG--
T ss_pred             ccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccc-hh--
Confidence            699999999999985     467899999999999999998876432221   2222233333433332222221 11  


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEccee-cCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC
Q psy11784         73 AQKYAQAARNIMEAHRDNIATLICEPVF-VVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA  151 (284)
Q Consensus        73 ~~~~~~~l~~~i~~~~~~vaavi~Epv~-~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~  151 (284)
                         .++.+++.+...++++||||+||++ +.||++++|++||++|+++|++||++||+|||||||||+|+ +|+++++|+
T Consensus       190 ---~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~~~~~~~v  265 (429)
T d1s0aa_         190 ---DMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAEI  265 (429)
T ss_dssp             ---GGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTC
T ss_pred             ---hhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc-cccccccee
Confidence               1566677777777889999999997 67889999999999999999999999999999999999998 899999999


Q ss_pred             CCcEEEecccccCC-cceeEEEecHHHHHhchh----------------------------------hhhHHHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNG-MPIGAVITSRKIAESLNC----------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       152 ~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~----------------------------------l~~~~~~~~~l~~  196 (284)
                      .|||+|+||+++|| +|+|++++++++++.+..                                  ++++++++++|++
T Consensus       266 ~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~  345 (429)
T d1s0aa_         266 APDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLRE  345 (429)
T ss_dssp             CCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHHH
Confidence            99999999999988 799999999999887632                                  4589999999999


Q ss_pred             HHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        197 PLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       197 ~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      +|+++           .|+|+++++. .......+.+.|+++|+++.+   .++++||.||+++|++|||+++++|++++
T Consensus       346 ~L~~l~~~~~v~~vrg~Gl~~~~e~~-~~~~~~~~~~~~~~~Gl~~~~---~g~~i~~~Ppl~it~~eid~~~~~l~~al  421 (429)
T d1s0aa_         346 QLAPARDAEMVADVRVLGAIGVVETT-HPVNMAALQKFFVEQGVWIRP---FGKLIYLMPPYIILPQQLQRLTAAVNRAV  421 (429)
T ss_dssp             HHGGGGGCTTEEEEEEETTEEEEEES-SCBCHHHHHHHHHHTTEECCC---BTTEEEECCCTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhccCCceEEEeecccEEEEEec-CcccHHHHHHHHHHCCcEEEe---cCCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence            99887           7999999996 334567899999999999985   35899999999999999999999999998


Q ss_pred             HHH
Q psy11784        266 TSL  268 (284)
Q Consensus       266 ~~~  268 (284)
                      +++
T Consensus       422 ~e~  424 (429)
T d1s0aa_         422 QDE  424 (429)
T ss_dssp             SSG
T ss_pred             Hhh
Confidence            765

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=100.00  E-value=2.1e-52  Score=387.46  Aligned_cols=251  Identities=23%  Similarity=0.311  Sum_probs=208.1

Q ss_pred             CcHHHHHHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCchHHHHHHHH
Q psy11784          1 SEANDLALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDPQAAQKYAQ   78 (284)
Q Consensus         1 seA~e~AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (284)
                      |||||+|+|+||.||+|++||+|++||||+|++++++++......  +..+ .....+.++....++++         ++
T Consensus       118 seA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~---------~~  187 (427)
T d2gsaa_         118 TEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSP-GVPKKTTANTLTTPYND---------LE  187 (427)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCS-SSCHHHHTTEEEECTTC---------HH
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCC-CCcccCccceeccCcch---------HH
Confidence            699999999999999999999999999999999999886533221  1111 11112233444455554         78


Q ss_pred             HHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEe
Q psy11784         79 AARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITV  158 (284)
Q Consensus        79 ~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~  158 (284)
                      .++++++++++++||||+|||||++|+++||++||++|+++|++||++||+||||||| |+|+ +|+++++|+.|||+|+
T Consensus       188 ~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~-~~~~~~~gi~PDi~~~  265 (427)
T d2gsaa_         188 AVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAY-GGVQEKFGVTPDLTTL  265 (427)
T ss_dssp             HHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT-TCHHHHTTCCCSEEEE
T ss_pred             HHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecc-cchHHhcCCCHHHHhh
Confidence            8999998777789999999999999999999999999999999999999999999999 7898 8999999999999999


Q ss_pred             cccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc-----
Q psy11784        159 GKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       159 sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~-----  201 (284)
                      ||+++||+|+|++++++++++.+..                                ++++++++++|++.|+++     
T Consensus       266 gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~  345 (427)
T d2gsaa_         266 GKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETG  345 (427)
T ss_dssp             CGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999988753                                458999999999999877     


Q ss_pred             -------cCceeEEEEec------------ccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLS------------ITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       202 -------~G~~~~i~~~~------------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                             .|.|+++.+..            +......+.+.|+++||++.|...    .++.||+++|++|||+++++|+
T Consensus       346 ~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~----~~~~~~l~~Te~dId~~l~al~  421 (427)
T d2gsaa_         346 HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF----EAGFTSLAHTEEDIDATLAAAR  421 (427)
T ss_dssp             CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT----SCEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCC----cceeCCCCCCHHHHHHHHHHHH
Confidence                   45666776531            122346788899999999986432    2356899999999999999999


Q ss_pred             HHHHH
Q psy11784        263 RIFTS  267 (284)
Q Consensus       263 ~~l~~  267 (284)
                      +++++
T Consensus       422 ~al~~  426 (427)
T d2gsaa_         422 TVMSA  426 (427)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            99865

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4e-51  Score=382.04  Aligned_cols=261  Identities=18%  Similarity=0.285  Sum_probs=201.9

Q ss_pred             CcHHHHHHHHHHHc--------------------------cCCccEEEEcCCCcccchhhhcCCCCccccc--CCCCCce
Q psy11784          1 SEANDLALQLARAY--------------------------TGRQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWV   52 (284)
Q Consensus         1 seA~e~AlklAr~~--------------------------~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~   52 (284)
                      |||||+|||+||+|                          ++|.+||+|++||||+|.+++++++......  ....+..
T Consensus       127 seAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~  206 (461)
T d1ohwa_         127 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWP  206 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCC
T ss_pred             hhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCc
Confidence            69999999999987                          3466899999999999999999987643221  1111111


Q ss_pred             EEccCCCCcCCC---CCCCchHHHHHHHHHHHHHHH---hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCE
Q psy11784         53 HVIPFPDTYRGE---FSADDPQAAQKYAQAARNIME---AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGV  126 (284)
Q Consensus        53 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~i~---~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~l  126 (284)
                       +.|.+.. .++   +..+.+.....+.+++++++.   ...+++||||+|||||++|++++|++||++|+++|++||++
T Consensus       207 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gil  284 (461)
T d1ohwa_         207 -IAPFPRL-KYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCA  284 (461)
T ss_dssp             -EECCCCC-CSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCE
T ss_pred             -ccccccc-cccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcc
Confidence             1222211 111   111112233344667777665   45667999999999999999999999999999999999999


Q ss_pred             EEEecccccCccccCccccccccCC--CCcEEEecccccCCc-ceeEEEecHHHHHhchh--------------------
Q psy11784        127 VIADEIQCGMGRSGSHFWAFQTQGA--VPDIITVGKPMGNGM-PIGAVITSRKIAESLNC--------------------  183 (284)
Q Consensus       127 lI~DEv~tG~gr~G~~~~a~~~~g~--~pDiv~~sK~l~~G~-p~gav~~~~~i~~~~~~--------------------  183 (284)
                      ||+|||||||||||+ +|+++++|+  .||++|+||+++||+ +.+.++...........                    
T Consensus       285 lI~DEV~tG~gRtG~-~~~~e~~gi~~~PDiv~~gK~l~~g~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~  363 (461)
T d1ohwa_         285 FLVDEVQTGGGSTGK-FWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKR  363 (461)
T ss_dssp             EEEECTTTCSSTTSS-SSGGGGGCCSSCCSEEEECGGGSSEEEEECGGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHH
T ss_pred             eeccccccccccccc-cccccccccccCchhhhhhhcccccccccccccccccccccccccccccccchhhcccchhhhh
Confidence            999999999999998 899999998  499999999999875 43333222211110000                    


Q ss_pred             ---hhhHHHHHHHHHHHHHhc-------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCC
Q psy11784        184 ---LDDNRPSGKYLVRPLGIN-------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAM  247 (284)
Q Consensus       184 ---l~~~~~~~~~l~~~L~~~-------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l  247 (284)
                         ++++++++++|+++|+++             .|+|+++++ ++...+.++++.|+++||++.+.+  +++|||.|||
T Consensus       364 ~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~ie~-~~~~~~~~i~~~~~~~Gll~~~~~--~~~ir~~PpL  440 (461)
T d1ohwa_         364 EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDT-PDESIRNKLISIARNKGVMLGGCG--DKSIRFRPTL  440 (461)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEEC-SSHHHHHHHHHHHHHTTEECEEET--TTEEECCCCT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeEEEEEEc-CCHHHHHHHHHHHHHCCeEEeeCC--CCEEEEeCCc
Confidence               458999999999999886             799999999 466678899999999999998754  6899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q psy11784        248 CLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~  267 (284)
                      ++|++|+|+++++|++++++
T Consensus       441 ~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         441 VFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             TCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999875

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=2.2e-49  Score=364.66  Aligned_cols=246  Identities=22%  Similarity=0.365  Sum_probs=191.1

Q ss_pred             CcHHHHHHHHHHHccC--------CccEEEEcCCCcccchhhhcCCCCccccc--CCCCCceEEccCCCCcCCCCCCCch
Q psy11784          1 SEANDLALQLARAYTG--------RQNIVVVDAAYHGTVNLLLDISPRAFMLS--SEKKPWVHVIPFPDTYRGEFSADDP   70 (284)
Q Consensus         1 seA~e~AlklAr~~~~--------r~~il~~~~~yHG~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   70 (284)
                      |||+|+|+|+||++++        +.+++.+.++|||.+.+..+.+.......  ..........|        +++   
T Consensus       106 s~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---  174 (404)
T d1z7da1         106 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVP--------YDD---  174 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEEC--------TTC---
T ss_pred             cchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccc--------cch---
Confidence            5899999999998863        45799999999999998887764432221  11111122222        222   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC
Q psy11784         71 QAAQKYAQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG  150 (284)
Q Consensus        71 ~~~~~~~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g  150 (284)
                            .+.++..+.  .+++||||+|||||++|+++||++||++|+++|++||++||+|||||||||+|. +|+++++|
T Consensus       175 ------~~~l~~~~~--~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~-~~~~e~~g  245 (404)
T d1z7da1         175 ------LEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYN  245 (404)
T ss_dssp             ------HHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT
T ss_pred             ------HHHHHHHhc--CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc-cccccccC
Confidence                  455555553  456999999999999999999999999999999999999999999999999998 89999999


Q ss_pred             CCCcEEEecccccCC-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHh
Q psy11784        151 AVPDIITVGKPMGNG-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       151 ~~pDiv~~sK~l~~G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +.|||+|+||+++|| +|+|++++++++++.+..                             .+++.++++++.+.|.+
T Consensus       246 v~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~  325 (404)
T d1z7da1         246 VKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKR  325 (404)
T ss_dssp             CCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHH
Confidence            999999999999998 799999999999987765                             34777888888888776


Q ss_pred             c------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        201 N------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       201 ~------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +            .|+|+++++..+.....++++.|+++||++.+.+  +++|||.||+++|+++||+++++|+++++++
T Consensus       326 ~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~--~~~ir~~Ppl~it~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         326 ELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVH--DKTIRLTPPLCITKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             HHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCeEEEEeeCcEEEEEEcCCcccHHHHHHHHHhCCeEEecCC--CCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence            5            7999999997444456779999999999998754  6899999999999999999999999999876

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2e-24  Score=197.11  Aligned_cols=243  Identities=16%  Similarity=0.186  Sum_probs=169.0

Q ss_pred             HHHHHHHccCCccEEEEcCCCcccchhhhcCCCCccccc-CCCC-----CceEEccCCCCcCCCCCCCchHHHHHHHHHH
Q psy11784          7 ALQLARAYTGRQNIVVVDAAYHGTVNLLLDISPRAFMLS-SEKK-----PWVHVIPFPDTYRGEFSADDPQAAQKYAQAA   80 (284)
Q Consensus         7 AlklAr~~~~r~~il~~~~~yHG~t~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (284)
                      .-++|+.+ |+..++.|.+||.++......+.+...... +...     ++.. .......++++++         .+++
T Consensus        96 E~~lA~~~-g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~-~~~a~~~~~~~~d---------~~~l  164 (401)
T d1fc4a_          96 EQKLAAFL-GMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVR-LCKAKRYRYANND---------MQEL  164 (401)
T ss_dssp             HHHHHHHH-TCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHH-TSCSEEEEECTTC---------HHHH
T ss_pred             HHHHHHhh-cCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHcccc-ccCceEEEEcCCC---------hHHH
Confidence            33445443 778888899988888765554443221110 0000     0000 1112223344554         4555


Q ss_pred             HHHHH---hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccC--ccccCccccccccCCC--C
Q psy11784         81 RNIME---AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGM--GRSGSHFWAFQTQGAV--P  153 (284)
Q Consensus        81 ~~~i~---~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~--gr~G~~~~a~~~~g~~--p  153 (284)
                      +++++   ......++|++|+|+++.|+..|    |+++++||++||++||+||+|+++  |..|.  +..+++++.  +
T Consensus       165 e~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~g~~g~~G~--G~~~~~~~~~~~  238 (401)
T d1fc4a_         165 EARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGR--GSHEYCDVMGRV  238 (401)
T ss_dssp             HHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSC--CHHHHTTCTTCC
T ss_pred             HHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhccccccCCCC--ccchhccCCCCC
Confidence            55554   33455789999999999999888    999999999999999999999843  33343  355667764  5


Q ss_pred             cEE--EecccccCCcceeEEEecHHHHHhchh--------------------------------hhhHHHHHHHHHHHHH
Q psy11784        154 DII--TVGKPMGNGMPIGAVITSRKIAESLNC--------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       154 Div--~~sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~  199 (284)
                      |++  |++|+++ |.+.|++.+++++++.+..                                .++++++.+++++.+.
T Consensus       239 dii~~tl~Ka~g-g~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~  317 (401)
T d1fc4a_         239 DIITGTLGKALG-GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMS  317 (401)
T ss_dssp             SEEEEESSSTTC-SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeecccccc-cCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhc
Confidence            555  8999996 4567999999999987754                                3467777888888887


Q ss_pred             hc-------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        200 IN-------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       200 ~~-------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      ..       .+.++.+.+ ++...+..++++|+++||++.+..+     +...||++++..||++|||+++++|+++.++
T Consensus       318 ~~g~~~~~~~~pIv~v~~-~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~  396 (401)
T d1fc4a_         318 AAGFTLAGADHAIIPVML-GDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             HTTCCBCCSSSSEEEEEE-ECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccCCCCCCEEEEEE-CCHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            75       223444555 4666788899999999999876432     3457999999999999999999999999877


Q ss_pred             H
Q psy11784        268 L  268 (284)
Q Consensus       268 ~  268 (284)
                      +
T Consensus       397 l  397 (401)
T d1fc4a_         397 L  397 (401)
T ss_dssp             T
T ss_pred             h
Confidence            5

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.2e-23  Score=187.98  Aligned_cols=230  Identities=12%  Similarity=0.121  Sum_probs=165.9

Q ss_pred             CCccEEEEcCCCcccchhhhcCCCCccccc-CCCCC-----ceEEccCCCCcCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q psy11784         16 GRQNIVVVDAAYHGTVNLLLDISPRAFMLS-SEKKP-----WVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAHRD   89 (284)
Q Consensus        16 ~r~~il~~~~~yHG~t~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~   89 (284)
                      |+...+.|..||+++......+........ +....     +.. .......+++|++         .+++++.+.+..+
T Consensus        97 g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~-~~~~~~~~~~hnd---------~~~le~~l~~~~~  166 (383)
T d1bs0a_          97 GYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAAS-LSPSQLRRFAHND---------VTHLARLLASPCP  166 (383)
T ss_dssp             TCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-TSSSEEEEECTTC---------HHHHHHHHHSCCS
T ss_pred             CCCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccc-cCCCcceEecchH---------HHHHHHHhcccCC
Confidence            788899999999998877665543321110 10000     000 1112223455665         7889999987666


Q ss_pred             CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc--CccccCccccccccCCCCcEEE--ecccccCC
Q psy11784         90 NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG--MGRSGSHFWAFQTQGAVPDIIT--VGKPMGNG  165 (284)
Q Consensus        90 ~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--~gr~G~~~~a~~~~g~~pDiv~--~sK~l~~G  165 (284)
                      ....|++|.++++.|.+.|    +++|.++|++||++||+||+|+.  +|.+|.  +..+++++.+|+++  +||+++. 
T Consensus       167 ~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~~gv~G~~g~--G~~~~~~~~~~~~~~t~~ka~g~-  239 (383)
T d1bs0a_         167 GQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGR--GSCWLQKVKPELLVVTFGKGFGV-  239 (383)
T ss_dssp             SCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGC--CHHHHTTCCCSEEEEESSSTTSS-
T ss_pred             CceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeecceeeeecCCccc--chHHHcCCccccccccccccccc-
Confidence            7788999999999999998    99999999999999999999983  355664  35678899998764  6677654 


Q ss_pred             cceeEEEecHHHHHhchh----------------------------------hhhHHHHHHHHHHHHHhc-------cCc
Q psy11784        166 MPIGAVITSRKIAESLNC----------------------------------LDDNRPSGKYLVRPLGIN-------LHI  204 (284)
Q Consensus       166 ~p~gav~~~~~i~~~~~~----------------------------------l~~~~~~~~~l~~~L~~~-------~G~  204 (284)
                       +.|+++++.++++.+..                                  .+++.++..++++.|.++       ...
T Consensus       240 -~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~  318 (383)
T d1bs0a_         240 -SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSA  318 (383)
T ss_dssp             -CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCSS
T ss_pred             -cccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccCCCCCC
Confidence             55899999998887754                                  124455666777777664       122


Q ss_pred             eeEEEEecccHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        205 FWCLILLSITYYLYRYTRRMKEAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       205 ~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      ++.+.+ ++...+.++.+.|+++||++.+..+     +..++|++++..+|++|||+++++|+.+
T Consensus       319 Ii~v~~-g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         319 IQPLIV-GDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             BCCEEE-ESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEE-CCHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            334444 4566788999999999999976432     2357999999999999999999998753

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.86  E-value=6e-21  Score=173.09  Aligned_cols=229  Identities=17%  Similarity=0.209  Sum_probs=160.1

Q ss_pred             CCccEEEEcCCCcccchhhhcCC---CCcccccCCC-----CCceEEccCCCCcCCCCCCCchHHHHHHHHHHHHHHHhc
Q psy11784         16 GRQNIVVVDAAYHGTVNLLLDIS---PRAFMLSSEK-----KPWVHVIPFPDTYRGEFSADDPQAAQKYAQAARNIMEAH   87 (284)
Q Consensus        16 ~r~~il~~~~~yHG~t~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~   87 (284)
                      |....+.|..||..+......+.   .......+..     .++.. .......+++|++         .++++++++..
T Consensus       104 g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~-ls~a~~~~f~Hnd---------~~~l~~l~~~~  173 (396)
T d2bwna1         104 QKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIK-RNAGPKRIFRHND---------VAHLRELIAAD  173 (396)
T ss_dssp             TCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHH-HSCCCEEEECTTC---------HHHHHHHHHHS
T ss_pred             CCCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhh-ccccCceEeecch---------HHHhhhHHhhh
Confidence            78889999999999876444321   1111000111     11111 1223334456665         67788877744


Q ss_pred             C-CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-c-CccccCccccccccCCC--CcEE--Eecc
Q psy11784         88 R-DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-G-MGRSGSHFWAFQTQGAV--PDII--TVGK  160 (284)
Q Consensus        88 ~-~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~~a~~~~g~~--pDiv--~~sK  160 (284)
                      . .+...|++|.|++|.|++.|    |++|.+||++||+.|++||+|+ | +|.+|.  +..+++++.  .|++  ||||
T Consensus       174 ~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~--G~~~~~~~~~~~di~~gTlsK  247 (396)
T d2bwna1         174 DPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGA--GVAERDGLMHRIDIFNGTLAK  247 (396)
T ss_dssp             CTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSC--CHHHHHTCGGGCSEEEEESSS
T ss_pred             cccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeeccceeeeeeccccc--cchhhcCCceeeeeeeecccc
Confidence            3 34668999999999999999    9999999999999999999997 3 466665  344566664  3555  8999


Q ss_pred             cccC-CcceeEEEecHHHHHhchh----------------------------------hhhHHHHHHHHHHHHHhc----
Q psy11784        161 PMGN-GMPIGAVITSRKIAESLNC----------------------------------LDDNRPSGKYLVRPLGIN----  201 (284)
Q Consensus       161 ~l~~-G~p~gav~~~~~i~~~~~~----------------------------------l~~~~~~~~~l~~~L~~~----  201 (284)
                      ++|+ |   |++++++++.+.+..                                  .+++..+.+++++.|.++    
T Consensus       248 a~g~~G---g~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~  324 (396)
T d2bwna1         248 AYGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPI  324 (396)
T ss_dssp             TTCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred             cccccc---cccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9985 5   888999999888765                                  113445566677777664    


Q ss_pred             ---cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCC-----CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        202 ---LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGE-----YGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       202 ---~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                         ...++.+.+ ++...+..+++.|+ ++|+++.+..+     +..++|++++..||++|||+++++|+++
T Consensus       325 ~~~~spIvpv~i-g~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         325 IDHGSHIVPVVI-GDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             CCCSSSCEEEEC-CCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEe-CCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence               122344444 45667888998866 68999876532     3468999999999999999999999875

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.83  E-value=1.8e-20  Score=173.47  Aligned_cols=256  Identities=11%  Similarity=0.030  Sum_probs=156.5

Q ss_pred             CcHHHHHHHHHHHcc-----CCccEEEEcCCCcccchhhhc-CCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHH
Q psy11784          1 SEANDLALQLARAYT-----GRQNIVVVDAAYHGTVNLLLD-ISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQ   74 (284)
Q Consensus         1 seA~e~AlklAr~~~-----~r~~il~~~~~yHG~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (284)
                      |+||+.|+|+++++.     .+..++  .+.||+.+..+.. ..+...... .......+.+ ++.  ...+.|      
T Consensus       100 t~A~~~a~~~~~~~g~~~~~~~~~~i--~~~~h~~t~~~~~~~~g~~~~~~-~~~~~~~~~~-~~~--~~~~~d------  167 (465)
T d1ax4a_         100 RGAENILFPVLLKYKQKEGKAKNPVF--ISNFHFDTTAAHVELNGCKAINI-VTEKAFDSET-YDD--WKGDFD------  167 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSCEE--EESSCCHHHHHHHHHTTCEEEEC-BCGGGGCTTS-CCT--TTTCBC------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeEE--eccchhhhhHHHHHHcCCeeecc-cccccCCCCC-CCC--ccCccC------
Confidence            589999999999874     223333  3678887765432 222111100 0000000000 000  111112      


Q ss_pred             HHHHHHHHHHHhcCCC-eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc------cCccccCcccccc
Q psy11784         75 KYAQAARNIMEAHRDN-IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC------GMGRSGSHFWAFQ  147 (284)
Q Consensus        75 ~~~~~l~~~i~~~~~~-vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t------G~gr~G~~~~a~~  147 (284)
                        .++++++|+...++ ++++++|++++.+|..+++.++|++|+++|++||++||+||+|+      +.+|++. +++..
T Consensus       168 --~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~-~~~~~  244 (465)
T d1ax4a_         168 --IKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPK-YKNAT  244 (465)
T ss_dssp             --HHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGG-GTTCC
T ss_pred             --HHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhccccccccc-ccccc
Confidence              68899999865544 89999999999999999999999999999999999999999987      3445543 34444


Q ss_pred             ccCCC------CcEEEecccccCCcc-eeEEEecHH--HHHhchh----------------------------------h
Q psy11784        148 TQGAV------PDIITVGKPMGNGMP-IGAVITSRK--IAESLNC----------------------------------L  184 (284)
Q Consensus       148 ~~g~~------pDiv~~sK~l~~G~p-~gav~~~~~--i~~~~~~----------------------------------l  184 (284)
                      ..++.      .|+++++|.-++|.| .|+++.+++  +.+....                                  +
T Consensus       245 ~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~  324 (465)
T d1ax4a_         245 IKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYL  324 (465)
T ss_dssp             HHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHH
Confidence            33333      467888888876644 455555432  2221111                                  2


Q ss_pred             hhHHHHHHHHHHHHHhc--------cCceeEEEEe---c----cc-HHHHHHHHHHHHCCcEEeecC-------------
Q psy11784        185 DDNRPSGKYLVRPLGIN--------LHIFWCLILL---S----IT-YYLYRYTRRMKEAKIIVANEG-------------  235 (284)
Q Consensus       185 ~~~~~~~~~l~~~L~~~--------~G~~~~i~~~---~----~~-~~~~~~~~~l~~~Gv~~~~~~-------------  235 (284)
                      ++..++.++|.+.|++.        .+....+...   +    .. .......+.+.+.||.....+             
T Consensus       325 ~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~  404 (465)
T d1ax4a_         325 HYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQ  404 (465)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSB
T ss_pred             HHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCc
Confidence            24445678888888875        1122222211   1    11 122334445567788754221             


Q ss_pred             --CCCCEEEEE-cCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        236 --EYGNVLLFL-PAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       236 --~~~~~lr~~-p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                        +..+.+||+ |+.++|++|+|.++++|++++++.++-
T Consensus       405 ~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~i  443 (465)
T d1ax4a_         405 KHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATL  443 (465)
T ss_dssp             CCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTTC
T ss_pred             cCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence              123589996 668899999999999999999877543

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.7e-18  Score=160.19  Aligned_cols=256  Identities=12%  Similarity=0.044  Sum_probs=158.9

Q ss_pred             CcHHHHHHHHHHHcc------CCccEEEEcCCCcccchhhhcCCCCcccccCCCCCceEEccCCCCcCCCCCCCchHHHH
Q psy11784          1 SEANDLALQLARAYT------GRQNIVVVDAAYHGTVNLLLDISPRAFMLSSEKKPWVHVIPFPDTYRGEFSADDPQAAQ   74 (284)
Q Consensus         1 seA~e~AlklAr~~~------~r~~il~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (284)
                      ++||+.|+++.+++.      ++..++...+.||+.+.+....++........... .  .+... .....+.|      
T Consensus        99 t~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~-~--~~~~~-~~~~~~~d------  168 (467)
T d2v1pa1          99 RGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEA-F--DTGVR-YDFKGNFD------  168 (467)
T ss_dssp             TTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTT-T--CTTSC-CTTTTCBC------
T ss_pred             HHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHHcCCeeeecccccc-c--ccccc-cccccCCC------
Confidence            589999999998763      56778889999999998877766543221000000 0  00000 00111112      


Q ss_pred             HHHHHHHHHHHhcCC-CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc---CccccCcccccccc-
Q psy11784         75 KYAQAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG---MGRSGSHFWAFQTQ-  149 (284)
Q Consensus        75 ~~~~~l~~~i~~~~~-~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG---~gr~G~~~~a~~~~-  149 (284)
                        .+.|++.++.+.. .++++++|++++++|..+++.++|++|+++|++||++||+|+++..   ++..+. .+.+... 
T Consensus       169 --~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~-~~~~~~~~  245 (467)
T d2v1pa1         169 --LEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQR-EAEYKDWT  245 (467)
T ss_dssp             --HHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHH-CGGGTTSC
T ss_pred             --HHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccc-cccccCCc
Confidence              6788998885544 4899999999999999999999999999999999999999999851   111221 1222222 


Q ss_pred             --------CCCCcEEEecccccCCcceeEEEe-cHH-HHHhchh------------------------------------
Q psy11784        150 --------GAVPDIITVGKPMGNGMPIGAVIT-SRK-IAESLNC------------------------------------  183 (284)
Q Consensus       150 --------g~~pDiv~~sK~l~~G~p~gav~~-~~~-i~~~~~~------------------------------------  183 (284)
                              +-..|++++++.-+.+.|.|++++ +++ +......                                    
T Consensus       246 ~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  325 (467)
T d2v1pa1         246 IEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLD  325 (467)
T ss_dssp             HHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHH
Confidence                    124788888765554445555554 332 2221110                                    


Q ss_pred             -hhhHHHHHHHHHHHHHhccCcee--------EEEEe---c----ccHHHHH-HHHHHHHCCcEEeec------------
Q psy11784        184 -LDDNRPSGKYLVRPLGINLHIFW--------CLILL---S----ITYYLYR-YTRRMKEAKIIVANE------------  234 (284)
Q Consensus       184 -l~~~~~~~~~l~~~L~~~~G~~~--------~i~~~---~----~~~~~~~-~~~~l~~~Gv~~~~~------------  234 (284)
                       +++..+++++|.++|.+. |..+        .++..   +    ....... ..+.+.+.||.....            
T Consensus       326 ~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~  404 (467)
T d2v1pa1         326 WLAYRIAQVQYLVDGLEEI-GVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTG  404 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCCEEEECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTC
T ss_pred             HHHHHHHHHHHHHHHHHhc-CCcccCCCccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccC
Confidence             235566778899999884 2221        11110   1    1111223 334445778754311            


Q ss_pred             ---CCCCCEEEEEcC-CCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        235 ---GEYGNVLLFLPA-MCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       235 ---~~~~~~lr~~p~-l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                         .+..+.+||++| .++|++|||+++++|++++++..+
T Consensus       405 ~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~~  444 (467)
T d2v1pa1         405 KQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAAN  444 (467)
T ss_dssp             SBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred             CccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence               123468999865 578999999999999999876543

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=2.6e-18  Score=150.02  Aligned_cols=189  Identities=11%  Similarity=0.098  Sum_probs=134.4

Q ss_pred             HHHHHHHHHh---cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC
Q psy11784         77 AQAARNIMEA---HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~---~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                      .+.+++.+..   +...+..+++++.+++.|...++.+.+++|+++|++||+++++||+++++...+. .+.........
T Consensus       112 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~-~~~~~~~~~~~  190 (343)
T d1m6sa_         112 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIAS-GVPVKEYAGYA  190 (343)
T ss_dssp             HHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHH-CCCHHHHHHTC
T ss_pred             HHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEecccccccccccc-ccchhhhcccc
Confidence            4555555552   2234788888888888888888999999999999999999999999997644332 22222222345


Q ss_pred             cEEEecccccC-CcceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        154 DIITVGKPMGN-GMPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       154 Div~~sK~l~~-G~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      +..+++|..+. |.+.++.+..++.......                             .....++..++.+.+.++  
T Consensus       191 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (343)
T d1m6sa_         191 DSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGY  270 (343)
T ss_dssp             SEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccHHHHhhhHhhCcccccccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhcc
Confidence            55666666654 4677888888776554433                             123444455555555554  


Q ss_pred             -------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 -------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 -------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                             ...++.+.+......+.++++.|+++||++.+.+  .+++|+.++..+|++|||+++++|+++++++
T Consensus       271 ~~~~~~~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~v~~~~--~~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         271 SVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             BCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEEE--TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCceEEEEEeCCCcccHHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                   2234555553334467889999999999999754  5899999999999999999999999999886

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.70  E-value=6.6e-17  Score=140.68  Aligned_cols=181  Identities=9%  Similarity=-0.033  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhcC---CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC--
Q psy11784         77 AQAARNIMEAHR---DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA--  151 (284)
Q Consensus        77 ~~~l~~~i~~~~---~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~--  151 (284)
                      .+.+++.+....   ..+.++++++++...+....+.+.++++.++|++||+++++|++|+++++.+. .+.......  
T Consensus       118 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~~~~~~~~  196 (345)
T d1v72a1         118 IVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSL-GCSPAEMTWKA  196 (345)
T ss_dssp             HHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHH-TCCTTTTTGGG
T ss_pred             HHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceecccc-ccCHHHhhccc
Confidence            566777665222   23677888888887777788999999999999999999999999997755554 333333333  


Q ss_pred             CCcEEEecccccCCcceeEEEecHH-HHHhchh-------------------------------hhhHHHHHHHHHHHHH
Q psy11784        152 VPDIITVGKPMGNGMPIGAVITSRK-IAESLNC-------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       152 ~pDiv~~sK~l~~G~p~gav~~~~~-i~~~~~~-------------------------------l~~~~~~~~~l~~~L~  199 (284)
                      .++..+++|..+++...+....... .......                               ..+...+.+++.+.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  276 (345)
T d1v72a1         197 GVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLE  276 (345)
T ss_dssp             TCCEEEECCGGGTCSSCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccCccccccccccccccchhhhhhhccccccccccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHH
Confidence            3456777777776554444444322 2211111                               1133444555555565


Q ss_pred             hccC---------ceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        200 INLH---------IFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       200 ~~~G---------~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      ++.|         -++.+.+      ...+++.|+++|+.+.+.....++|||+++..+|+||||.++++|+++
T Consensus       277 ~~~g~~~~~p~~~niv~~~~------~~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         277 GLGGVEVLGGTEANILFCRL------DSAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             TCTTEEEESCCCSSEEEEEE------CHHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             hcCCcEeccCCCccEEEEEc------CHHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5412         2333333      235778899999998766556789999999999999999999999864

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=2e-15  Score=135.58  Aligned_cols=185  Identities=15%  Similarity=0.177  Sum_probs=126.5

Q ss_pred             HHHHHHHHHhcCCCeeEEEE-cceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc-
Q psy11784         77 AQAARNIMEAHRDNIATLIC-EPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD-  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~-Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD-  154 (284)
                      +++|++.+.   +++.++++ .| ++-.|. ..+++.+++|.++|++||+++|.||+|..|...+............++ 
T Consensus       149 ~~~l~~~~~---~~~~~i~~~~P-~NPtG~-~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~  223 (388)
T d1gdea_         149 VDELKKYVT---DKTRALIINSP-CNPTGA-VLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFER  223 (388)
T ss_dssp             HHHHHHHCC---TTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGG
T ss_pred             HHHHHHhCc---cCCeEEEECCC-cCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCe
Confidence            566666554   44555544 45 555665 568999999999999999999999999877443331222222222233 


Q ss_pred             ---EEEeccccc-CCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHH
Q psy11784        155 ---IITVGKPMG-NGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRP  197 (284)
Q Consensus       155 ---iv~~sK~l~-~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~  197 (284)
                         +-++||.++ .|+++|++++++++.+.+..                                 .++++++...+.+.
T Consensus       224 ~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d1gdea_         224 TITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKR  303 (388)
T ss_dssp             EEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCChhhccCccccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhh
Confidence               237899998 79999999999988776654                                 11233334444444


Q ss_pred             HHhc--------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        198 LGIN--------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       198 L~~~--------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      |...        .|+++++++........++++.|+ ++||++.|+..+    .+++|++  +..+++++++++++|.++
T Consensus       304 l~~~~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis--~~~~~e~l~~al~rL~~~  381 (388)
T d1gdea_         304 LNEMGLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRIS--YATAYEKLEEAMDRMERV  381 (388)
T ss_dssp             HHHTTCCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHH
T ss_pred             hhhccccccCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence            4443        366777776322345677888766 569999987543    4689996  456899999999999999


Q ss_pred             HHHH
Q psy11784        265 FTSL  268 (284)
Q Consensus       265 l~~~  268 (284)
                      +++.
T Consensus       382 l~e~  385 (388)
T d1gdea_         382 LKER  385 (388)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            8764

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=2.4e-15  Score=135.14  Aligned_cols=178  Identities=17%  Similarity=0.191  Sum_probs=124.8

Q ss_pred             HHHHHHHHHhcCCCeeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc-
Q psy11784         77 AQAARNIMEAHRDNIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD-  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD-  154 (284)
                      ++.+++.+   .+++.+++ ..| ++-.|. +.+++.+++|.++|++||+++|.||+|..+...|+ ......  ..+| 
T Consensus       154 ~~~l~~~~---~~~~~~i~~~~P-~NPTG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~--~~~~~  225 (382)
T d1b5pa_         154 PERVRRAI---TPRTKALVVNSP-NNPTGA-VYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE-HFSPGR--VAPEH  225 (382)
T ss_dssp             HHHHHTTC---CTTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGGG--TCTTT
T ss_pred             HHHHHHhC---CCCCeEEEECCC-CCCcch-hCCHHHHHHHHHHHHHcCeEEEEEccccceecCCC-CCCHHH--cCCCC
Confidence            45555443   34555554 455 565665 57899999999999999999999999998755555 222211  2222 


Q ss_pred             ---EEEeccccc-CCcceeEEEecHHHHHhchh----------------------------------hhhHHHHHHHHHH
Q psy11784        155 ---IITVGKPMG-NGMPIGAVITSRKIAESLNC----------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       155 ---iv~~sK~l~-~G~p~gav~~~~~i~~~~~~----------------------------------l~~~~~~~~~l~~  196 (284)
                         +.++||.++ .|+++|++++++++++.+..                                  .+.++++.+.+.+
T Consensus       226 ~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (382)
T d1b5pa_         226 TLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLE  305 (382)
T ss_dssp             EEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecchhhccCcHhheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHH
Confidence               236899998 79999999999998876643                                  1123334444455


Q ss_pred             HHHhc--------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        197 PLGIN--------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       197 ~L~~~--------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      .++..        .|+++++++.+.......+.+.|+++||++.|+..+  .+++|++  +..++++|++++++|.++
T Consensus       306 ~l~~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis--~~~~~e~l~~al~rl~~~  381 (382)
T d1b5pa_         306 GLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLS--YATSEENLRKALERFARV  381 (382)
T ss_dssp             HHHHHTCCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEE--CCSCHHHHHHHHHHGGGG
T ss_pred             HHhhcCCeEecCCceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEE--EcCCHHHHHHHHHHHHHh
Confidence            55443        466778877543345677888999999999987543  3689996  456899999999998765

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.65  E-value=5.7e-15  Score=133.08  Aligned_cols=183  Identities=11%  Similarity=0.146  Sum_probs=128.9

Q ss_pred             HHHHHHHHHhcCCCee-EEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCC--
Q psy11784         77 AQAARNIMEAHRDNIA-TLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP--  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~va-avi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p--  153 (284)
                      .+++++.+.   ++.. .++..| ++-.|. ..+++.+++|.++|++||+++|.||+|..+...+.......  ...|  
T Consensus       153 ~~~l~~~~~---~~~~~~~~~~P-~NPTG~-~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~--~~~~~~  225 (388)
T d1j32a_         153 PEQIRQAIT---PKTKLLVFNTP-SNPTGM-VYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIG--AASPEA  225 (388)
T ss_dssp             HHHHHHHCC---TTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGG--GSCHHH
T ss_pred             HHHHHHhCC---CCCeEEEECCC-CCCCCc-ccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHH--HhCccc
Confidence            566666554   4544 455666 555665 57899999999999999999999999986644443111111  1112  


Q ss_pred             ---c--EEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHH
Q psy11784        154 ---D--IITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       154 ---D--iv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~  196 (284)
                         .  +.++||.++ .|+++|++++++++++.+..                               .+.++++.+++.+
T Consensus       226 ~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (388)
T d1j32a_         226 YERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLD  305 (388)
T ss_dssp             HHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence               1  346899998 79999999999999876654                               2245566666777


Q ss_pred             HHHhc---------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy11784        197 PLGIN---------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRI  264 (284)
Q Consensus       197 ~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~  264 (284)
                      .|++.         .|+++++++........++++.|+ ++||.+.|+..+  .+++|++.  ..+++++++++++|+++
T Consensus       306 ~l~~~~g~~~~~p~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~--~~~~e~l~~al~rl~~~  383 (388)
T d1j32a_         306 ALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSY--ATDLDTIKRGMERLEKF  383 (388)
T ss_dssp             HHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEEC--CSCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCEecCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEE--eCCHHHHHHHHHHHHHH
Confidence            77664         356666666322234567887776 569999987543  47899964  56899999999999999


Q ss_pred             HHHH
Q psy11784        265 FTSL  268 (284)
Q Consensus       265 l~~~  268 (284)
                      ++.+
T Consensus       384 l~~l  387 (388)
T d1j32a_         384 LHGI  387 (388)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.64  E-value=8.9e-15  Score=132.07  Aligned_cols=180  Identities=12%  Similarity=0.070  Sum_probs=125.3

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc---cCCCCcEEEecccccC
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT---QGAVPDIITVGKPMGN  164 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~---~g~~pDiv~~sK~l~~  164 (284)
                      ......+++-+.++..|. ..+.+.+++|.++|++||++||.||+|..|...|...-....   ++...-+.++||.++.
T Consensus       169 ~~~~~~~~~~~p~NPtG~-~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  247 (403)
T d1wsta1         169 KRVKIVYTVSTFQNPAGV-TMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAP  247 (403)
T ss_dssp             CCCCEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCG
T ss_pred             ccccccccccccCCCCCc-cCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecC
Confidence            333444444444444554 668999999999999999999999999877555541111111   2222234478999988


Q ss_pred             CcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHHhc----------
Q psy11784        165 GMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLGIN----------  201 (284)
Q Consensus       165 G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~~----------  201 (284)
                      |+++|++++++++++.+..                                 .+.+.+..+.+.+.|.+.          
T Consensus       248 G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p  327 (403)
T d1wsta1         248 GFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKP  327 (403)
T ss_dssp             GGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC
T ss_pred             cccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCC
Confidence            9999999999998876544                                 113334444555555542          


Q ss_pred             -cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC------CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        202 -LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY------GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       202 -~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                       .|+++++++ +.......+++.|.++||++.|+..+      .+++||+.+. .+++++++++++|.+++++..+
T Consensus       328 ~gg~~~~~~~-~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~~~~k  401 (403)
T d1wsta1         328 EGGMFVRVTL-PEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY-VPEETIREGVRRLAETIKEEMK  401 (403)
T ss_dssp             SBSSEEEEEC-CTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeEEEEEC-CCCCCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHHHHh
Confidence             466777777 44445667888999999999987432      3689997643 5899999999999999986543

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.61  E-value=1.1e-14  Score=129.33  Aligned_cols=169  Identities=14%  Similarity=0.131  Sum_probs=120.1

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc---EEEeccccc-
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD---IITVGKPMG-  163 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD---iv~~sK~l~-  163 (284)
                      ..++.+|++.+-++..|. ..+++.+++|.++|++|++++|.||++..|...+... . ......+.   +.++||.++ 
T Consensus       142 ~~~~~~v~l~nP~NPtG~-~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~-~-~~~~~~~~~i~~~S~SK~~~l  218 (355)
T d1lc5a_         142 TPDLDCLFLCTPNNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGF-I-PALKDNPHIWVLRSLTKFYAI  218 (355)
T ss_dssp             CTTCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCS-G-GGCTTCTTEEEEEESTTTTTC
T ss_pred             ccccceeeeecccCcccc-cchhhhhhhhhhhccccccccccccceeeeeeecccc-c-ccccccccceeeccccccccc
Confidence            445666665544777776 5689999999999999999999999998775544311 1 11222233   337899998 


Q ss_pred             CCcceeEEEecHHHH-Hhchh----------------------------hhhHHHHHHHHHHHHHhc--------cCcee
Q psy11784        164 NGMPIGAVITSRKIA-ESLNC----------------------------LDDNRPSGKYLVRPLGIN--------LHIFW  206 (284)
Q Consensus       164 ~G~p~gav~~~~~i~-~~~~~----------------------------l~~~~~~~~~l~~~L~~~--------~G~~~  206 (284)
                      .|+++|+++++++.. +.+..                            .+++++..+++.+.|.++        .|.++
T Consensus       219 ~GlR~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~f~  298 (355)
T d1lc5a_         219 PGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYL  298 (355)
T ss_dssp             TTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEE
T ss_pred             ccccccceeccchhhhHHHHhhcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcEECCCCCEEE
Confidence            799999999976543 43322                            235666677777777775        45666


Q ss_pred             EEEEecccHHHHHHHHHHHHCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        207 CLILLSITYYLYRYTRRMKEAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       207 ~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      ++.+. .  ...++++.|+++||+++++..+    .+++||+.+   +++|+++++++|++++
T Consensus       299 ~~~~~-~--~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~---~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         299 LLRCE-R--EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVL  355 (355)
T ss_dssp             EEEES-C--TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             EEECC-C--CHHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence            66663 2  3456888999999999986543    479999643   8999999999998764

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.59  E-value=2.5e-13  Score=123.83  Aligned_cols=188  Identities=14%  Similarity=0.166  Sum_probs=124.5

Q ss_pred             HHHHHHHH---hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc----cC
Q psy11784         78 QAARNIME---AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT----QG  150 (284)
Q Consensus        78 ~~l~~~i~---~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~----~g  150 (284)
                      +.+++.+.   +....+.++++-.-++-.|. ..+++.+++|.++|++||+++|.||+|..+-..+..+.....    ..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~-~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~  252 (431)
T d1m7ya_         174 TALEEAYQEAEKRNLRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRN  252 (431)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTT
T ss_pred             HHhhhhhhhhhhccCcceEEEecCccccccc-cccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcc
Confidence            44444443   33445666655433555565 568999999999999999999999999876444431211110    01


Q ss_pred             C-----CCc-E---EEeccccc-CCcceeEEEecHHHHHhchh---------------------------------hhhH
Q psy11784        151 A-----VPD-I---ITVGKPMG-NGMPIGAVITSRKIAESLNC---------------------------------LDDN  187 (284)
Q Consensus       151 ~-----~pD-i---v~~sK~l~-~G~p~gav~~~~~i~~~~~~---------------------------------l~~~  187 (284)
                      .     .++ +   -++||.++ .|+++|++++++++......                                 .+++
T Consensus       253 ~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~  332 (431)
T d1m7ya_         253 CDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRL  332 (431)
T ss_dssp             CSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhccccccccccchhhhhhccchhhhhhhhhhhhhh
Confidence            1     111 2   26899998 68999999998876543221                                 1244


Q ss_pred             HHHHHHHHHHHHhc--------cCceeEEEEec-----ccHHHHHHHHHHH-HCCcEEeecCC----CCCEEEEEcCCCC
Q psy11784        188 RPSGKYLVRPLGIN--------LHIFWCLILLS-----ITYYLYRYTRRMK-EAKIIVANEGE----YGNVLLFLPAMCL  249 (284)
Q Consensus       188 ~~~~~~l~~~L~~~--------~G~~~~i~~~~-----~~~~~~~~~~~l~-~~Gv~~~~~~~----~~~~lr~~p~l~~  249 (284)
                      +++.+.+.+.|++.        .|+++++++..     ......+++++|+ ++||++.|+..    ..+++|++.. ..
T Consensus       333 ~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a-~~  411 (431)
T d1m7ya_         333 KQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA-NL  411 (431)
T ss_dssp             HHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS-SS
T ss_pred             hhhhhhhhhhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeC-cC
Confidence            55566666777664        57788888741     1234557888877 56999998743    3478999642 35


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q psy11784        250 TTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       250 t~~~id~~~~~l~~~l~~  267 (284)
                      +++++++++++|.+++++
T Consensus       412 ~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         412 PERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            788999999999999876

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.59  E-value=3.1e-13  Score=123.05  Aligned_cols=179  Identities=13%  Similarity=0.097  Sum_probs=120.3

Q ss_pred             cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccc-c------cCCCCc----E
Q psy11784         87 HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQ-T------QGAVPD----I  155 (284)
Q Consensus        87 ~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~-~------~g~~pD----i  155 (284)
                      ....+.++++-.-.+-.|. ..+.+.+++|.++|++||+++|.||+|..+-..+..+.... .      ....+|    +
T Consensus       185 ~~~~~~~~~l~nP~NPtG~-~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~  263 (428)
T d1iaya_         185 SNIKVKGLILTNPSNPLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIV  263 (428)
T ss_dssp             TTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEE
T ss_pred             cCCCceEEEEccCCCcccc-cccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEE
Confidence            3455666655433555564 56889999999999999999999999987644443111111 0      111233    3


Q ss_pred             EEeccccc-CCcceeEEEe-cHHHHHhchh--------------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        156 ITVGKPMG-NGMPIGAVIT-SRKIAESLNC--------------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       156 v~~sK~l~-~G~p~gav~~-~~~i~~~~~~--------------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      -++||.++ .|+++|++++ ++.+.+.+..                                .+.++++.+.+.+.|+..
T Consensus       264 ~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~  343 (428)
T d1iaya_         264 YSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV  343 (428)
T ss_dssp             EESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCcccCCCcccccccccccchhhhhhhhhcccccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC
Confidence            37899997 5899999998 4556554433                                113445566677777654


Q ss_pred             --------cCceeEEEEec-----ccHHHHHHHHHHHH-CCcEEeecCC----CCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        202 --------LHIFWCLILLS-----ITYYLYRYTRRMKE-AKIIVANEGE----YGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       202 --------~G~~~~i~~~~-----~~~~~~~~~~~l~~-~Gv~~~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                              .|+++++++.+     ......++++.|++ +||++.|+..    ..+++|++.. ..++++|++++++|.+
T Consensus       344 gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~  422 (428)
T d1iaya_         344 GIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRR  422 (428)
T ss_dssp             TCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHH
T ss_pred             CCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHH
Confidence                    57788888751     11234568888875 5999998743    2478999742 3577889999999999


Q ss_pred             HHHH
Q psy11784        264 IFTS  267 (284)
Q Consensus       264 ~l~~  267 (284)
                      ++..
T Consensus       423 ~l~~  426 (428)
T d1iaya_         423 FVGV  426 (428)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            8853

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.1e-13  Score=121.05  Aligned_cols=185  Identities=12%  Similarity=0.031  Sum_probs=121.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCC-CcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAV-PDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~-pDi  155 (284)
                      .+.+++.+.  ..+++++++-.-++..|. ..+.+.+++|.++|++||+++|.||+|..|-..+. .... ..... .+.
T Consensus       122 ~~~~~~~~~--~~~~~~i~l~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~-~~~~-~~~~~~~~~  196 (361)
T d1d2fa_         122 MGKLEAVLA--KPECKIMLLCSPQNPTGK-VWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ-PHIP-WSNVARGDW  196 (361)
T ss_dssp             HHHHHHHHT--STTEEEEEEESSCTTTCC-CCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS-CCCC-GGGTCCSSE
T ss_pred             cccchhhcc--cCCceeEEeccccccccc-ccchhhhhhhhhhhhhhheeeeecccccccccccc-cccc-ccccccccc
Confidence            556666664  345777766555666665 66889999999999999999999999998743333 1111 11122 233


Q ss_pred             ---EEeccccc-CCcceeEEEecH-HHHHhc----hh-----------------------------hhhHHHHHHHHHHH
Q psy11784        156 ---ITVGKPMG-NGMPIGAVITSR-KIAESL----NC-----------------------------LDDNRPSGKYLVRP  197 (284)
Q Consensus       156 ---v~~sK~l~-~G~p~gav~~~~-~i~~~~----~~-----------------------------l~~~~~~~~~l~~~  197 (284)
                         .++||.++ .|+++|++.... ...+..    ..                             ....+++.+.+.+.
T Consensus       197 v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  276 (361)
T d1d2fa_         197 ALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADK  276 (361)
T ss_dssp             EEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHH
Confidence               34688887 579999887652 222211    11                             11233333334444


Q ss_pred             HHhc----------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        198 LGIN----------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       198 L~~~----------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      +.+.          .|++.++++.+...+..+++++|+++ ||++.|+..+    .+++|++  +..+++++++++++|.
T Consensus       277 ~~~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis--~~~~~e~l~~al~rl~  354 (361)
T d1d2fa_         277 MNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN--AGCPRSKLEKGVAGLI  354 (361)
T ss_dssp             HHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHH
T ss_pred             hhhhcccccccccCceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEE--EcCCHHHHHHHHHHHH
Confidence            3332          36677777743344677899888765 9999987543    3689996  4568999999999999


Q ss_pred             HHHHHH
Q psy11784        263 RIFTSL  268 (284)
Q Consensus       263 ~~l~~~  268 (284)
                      ++++++
T Consensus       355 ~~l~~l  360 (361)
T d1d2fa_         355 NAIRAV  360 (361)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999876

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=6.6e-14  Score=127.03  Aligned_cols=177  Identities=11%  Similarity=0.125  Sum_probs=123.0

Q ss_pred             eeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc----EEEecccccCC
Q psy11784         91 IATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD----IITVGKPMGNG  165 (284)
Q Consensus        91 vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD----iv~~sK~l~~G  165 (284)
                      ...++ +-+-++-.|. ..+.+.+++|.++|++|++++|.||+|..|...+......... ..|+    +.+++|....|
T Consensus       183 ~~~~~~~~~p~NPtG~-~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~-~~~~~~i~~~s~sk~~~~G  260 (420)
T d1vp4a_         183 VKFIYVVSNFHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKI-GGPERVVLLNTFSKVLAPG  260 (420)
T ss_dssp             EEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHH-HCTTTEEEEEESTTTTCGG
T ss_pred             cceeeEecCCCCccch-hhhhhhhhhhhhhhhcccccccccchhhhccccCccccccccc-ccccceeEEeccccccccc
Confidence            44444 4333444554 5799999999999999999999999999775445411111111 1122    23567877779


Q ss_pred             cceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHHhc-----------
Q psy11784        166 MPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLGIN-----------  201 (284)
Q Consensus       166 ~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~~-----------  201 (284)
                      +++|++++++++++.+..                                 .+.++++.+.+.+.|++.           
T Consensus       261 ~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~  340 (420)
T d1vp4a_         261 LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVK  340 (420)
T ss_dssp             GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECC
T ss_pred             cccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEec
Confidence            999999999999887754                                 113344455555555543           


Q ss_pred             --cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCC------CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        202 --LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEY------GNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       202 --~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                        .|+++++++ +......++++.|.++||++.|+..+      .+++|++.+ ..+++++++++++|.+++++..++
T Consensus       341 p~gg~f~~~~~-~~~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a~~rL~~~l~~~~~~  416 (420)
T d1vp4a_         341 SEGGLFIWLTL-PEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKE  416 (420)
T ss_dssp             CSBSSEEEEEC-CTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEC-CCCCCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHhhHh
Confidence              356777777 33334556788899999999987433      368999754 358899999999999999988654

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=2.8e-13  Score=120.84  Aligned_cols=172  Identities=13%  Similarity=0.166  Sum_probs=122.3

Q ss_pred             CCCee-EEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc---EEEeccccc
Q psy11784         88 RDNIA-TLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD---IITVGKPMG  163 (284)
Q Consensus        88 ~~~va-avi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD---iv~~sK~l~  163 (284)
                      ...+. .++..| ++-.|. ..+.+.+++|.++|++|+++||.||++..+...+.........+....   +.++||.++
T Consensus       159 ~~~~~~~~l~nP-~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  236 (375)
T d1o4sa_         159 VGKTKAVLINSP-NNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS  236 (375)
T ss_dssp             CTTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTT
T ss_pred             ccCccEEEEeCC-CCCccC-CCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhcc
Confidence            34444 445566 666676 558999999999999999999999999855333321111111122222   447899998


Q ss_pred             -CCcceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc--------cCcee
Q psy11784        164 -NGMPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN--------LHIFW  206 (284)
Q Consensus       164 -~G~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~--------~G~~~  206 (284)
                       .|+++|++++++++++.+..                            .+.+.++.+.+.+.|++.        .|+++
T Consensus       237 l~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~f~  316 (375)
T d1o4sa_         237 MTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYL  316 (375)
T ss_dssp             CGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEE
T ss_pred             CCccccccccccccchhhhhhhhccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhcCceEecCCccEEE
Confidence             79999999999998876654                            235667777888888776        56777


Q ss_pred             EEEEecccHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        207 CLILLSITYYLYRYTRRMK-EAKIIVANEGEY--GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       207 ~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      ++++. .  ...+++..|+ ++||++.|+..+  .+++|++  +..+++++++++++|+++++
T Consensus       317 ~~~~~-~--~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis--~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         317 FFKVR-G--DDVKFCERLLEEKKVALVPGSAFLKPGFVRLS--FATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             EEECS-S--CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHHHHHHT
T ss_pred             EEECC-C--CHHHHHHHHHHhCCEEEEEccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHhc
Confidence            88773 2  2445566655 679999987543  4689997  45689999999999998874

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.54  E-value=2.3e-13  Score=123.41  Aligned_cols=177  Identities=14%  Similarity=0.100  Sum_probs=125.6

Q ss_pred             cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccc-cccCCCCcE---EEecccc
Q psy11784         87 HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAF-QTQGAVPDI---ITVGKPM  162 (284)
Q Consensus        87 ~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~-~~~g~~pDi---v~~sK~l  162 (284)
                      ....+.++++-+-++..|. ..+++.+++|.++|++||+++|.||+|..+...+...-.. ...+..+.+   .++||.+
T Consensus       168 ~~~~~~~~~i~~p~NPtG~-~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~  246 (418)
T d2r5ea1         168 FNEKTKMIIINTPHNPLGK-VMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF  246 (418)
T ss_dssp             CCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT
T ss_pred             hhccccceecCCcCccccc-cccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccc
Confidence            3456777777655666665 5689999999999999999999999998664333211111 122222333   3689999


Q ss_pred             c-CCcceeEEEecHHHHHhchh--------------------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        163 G-NGMPIGAVITSRKIAESLNC--------------------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       163 ~-~G~p~gav~~~~~i~~~~~~--------------------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      + .|+++|++++++++++.+..                                      .++++.+.+++.+.|+++  
T Consensus       247 ~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~  326 (418)
T d2r5ea1         247 SLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGM  326 (418)
T ss_dssp             TCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcCC
Confidence            8 79999999999998876644                                      113455666777777765  


Q ss_pred             ------cCceeEEEEec-----------ccHHHHHHHHHHHH-CCcEEeecCCC---------CCEEEEEcCCCCCHHHH
Q psy11784        202 ------LHIFWCLILLS-----------ITYYLYRYTRRMKE-AKIIVANEGEY---------GNVLLFLPAMCLTTENV  254 (284)
Q Consensus       202 ------~G~~~~i~~~~-----------~~~~~~~~~~~l~~-~Gv~~~~~~~~---------~~~lr~~p~l~~t~~~i  254 (284)
                            .|+++++++.+           ......++++.|++ .||.+.|+..+         .+++|++.  ..+++++
T Consensus       327 ~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~--~~~~e~l  404 (418)
T d2r5ea1         327 NPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCF--FKKDENL  404 (418)
T ss_dssp             EEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEEC--CSCHHHH
T ss_pred             cccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEe--cCCHHHH
Confidence                  46777777641           12356778888875 59999987543         25799964  5689999


Q ss_pred             HHHHHHHHHHHH
Q psy11784        255 LFIVSTLNRIFT  266 (284)
Q Consensus       255 d~~~~~l~~~l~  266 (284)
                      ++++++|++.+.
T Consensus       405 ~~a~~rl~~~lg  416 (418)
T d2r5ea1         405 QKAAEILRKWKG  416 (418)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999988763

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.53  E-value=3.4e-13  Score=121.40  Aligned_cols=186  Identities=13%  Similarity=0.106  Sum_probs=121.4

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc--cCCCCc-
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT--QGAVPD-  154 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~--~g~~pD-  154 (284)
                      +.++..+.  ..++.++++-.-++-.|. +.+++.+++|.++|++|++++|.||+|..|-..+........  .+.... 
T Consensus       154 ~~~~~~~~--~~~~~~i~l~~P~NPTG~-v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~  230 (394)
T d1c7na_         154 QKLEKLSK--DKNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKT  230 (394)
T ss_dssp             HHHHHHHT--CTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTE
T ss_pred             hhhhhhhc--cccceEEEecccccccce-eccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccce
Confidence            44444443  345666666544555665 568999999999999999999999999877333321111111  111111 


Q ss_pred             --EEEeccccc-CCcceeEEEecH-HHHHhchh--------------------------------hhhHHHHHHHHHHHH
Q psy11784        155 --IITVGKPMG-NGMPIGAVITSR-KIAESLNC--------------------------------LDDNRPSGKYLVRPL  198 (284)
Q Consensus       155 --iv~~sK~l~-~G~p~gav~~~~-~i~~~~~~--------------------------------l~~~~~~~~~l~~~L  198 (284)
                        +.++||.++ .|+++|++++++ .+.+.+..                                .+..+++.+.+.+.+
T Consensus       231 i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  310 (394)
T d1c7na_         231 ITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFF  310 (394)
T ss_dssp             EEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccccccccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhh
Confidence              235789998 689999888764 55554432                                112333444444444


Q ss_pred             Hhc----------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        199 GIN----------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEGEY----GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       199 ~~~----------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      +..          .|+++++++........++++.|+++ ||++.|+..+    .+++||+  +..++++|++++++|.+
T Consensus       311 ~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~i~eal~rl~~  388 (394)
T d1c7na_         311 EVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN--LAAPSSVIQESLERLNK  388 (394)
T ss_dssp             HHHCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHH
T ss_pred             hccccceeecCCCceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEE--EeCCHHHHHHHHHHHHH
Confidence            432          35566777632234577889988865 9999987544    3689996  56689999999999999


Q ss_pred             HHHHH
Q psy11784        264 IFTSL  268 (284)
Q Consensus       264 ~l~~~  268 (284)
                      +++++
T Consensus       389 ~l~~L  393 (394)
T d1c7na_         389 ALKDL  393 (394)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99886

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.52  E-value=2.1e-13  Score=121.74  Aligned_cols=166  Identities=12%  Similarity=0.075  Sum_probs=122.0

Q ss_pred             hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh----CCEEEEecccccCccccCccccccccCCCCcEEEec--
Q psy11784         86 AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI----GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--  159 (284)
Q Consensus        86 ~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~----g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--  159 (284)
                      ...+++.+|++..+.+..|...+    +++|.++|++|    ++++++|.+|+ +|..     -.......+|+++++  
T Consensus       141 ~i~~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~-----~~~~~~~~~D~~~~s~~  210 (381)
T d1elua_         141 HLGPKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL-----PLDFSRLEVDYYAFTGH  210 (381)
T ss_dssp             TCCTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB-----CCCTTTSCCSEEEEESS
T ss_pred             hhcccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-cccc-----ccccccccccccccccc
Confidence            33467999999999999999988    89999999985    69999999986 4321     222234468887655  


Q ss_pred             ccccCCcceeEEEecHHHHHhchh-------------------------------------------------------h
Q psy11784        160 KPMGNGMPIGAVITSRKIAESLNC-------------------------------------------------------L  184 (284)
Q Consensus       160 K~l~~G~p~gav~~~~~i~~~~~~-------------------------------------------------------l  184 (284)
                      |.+++...+|++..+++..+.+..                                                       .
T Consensus       211 K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~  290 (381)
T d1elua_         211 KWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERY  290 (381)
T ss_dssp             STTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             ccccccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccch
Confidence            999876677888887766554321                                                       2


Q ss_pred             hhHHHHHHHHHHHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        185 DDNRPSGKYLVRPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       185 ~~~~~~~~~l~~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      ++..++.+++.++|+++           .+.++.+.+. .......+.+.|.++||.++..+ .++.+|+++....|++|
T Consensus       291 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~-~~~~~~~i~~~L~~~gi~v~~~~-~~~~lRis~~~~nt~ed  368 (381)
T d1elua_         291 QAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVD-SPLGHRAIVQKLEEQRIYLRTIA-DPDCIRACCHYITDEEE  368 (381)
T ss_dssp             HHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEEC-SSSCHHHHHHHHHHTTEECEEET-TTTEEEEECCTTCCHHH
T ss_pred             hhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcC-CCCCHHHHHHHHHhCCcEEEecC-CCCEEEEecCCCCCHHH
Confidence            35556677888888876           3335555553 22345678899999999987543 35899999999999999


Q ss_pred             HHHHHHHHHH
Q psy11784        254 VLFIVSTLNR  263 (284)
Q Consensus       254 id~~~~~l~~  263 (284)
                      ||++++.|++
T Consensus       369 id~ll~~l~e  378 (381)
T d1elua_         369 INHLLARLAD  378 (381)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.7e-13  Score=120.38  Aligned_cols=176  Identities=16%  Similarity=0.151  Sum_probs=121.5

Q ss_pred             cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc-CCCCc---EEEecccc
Q psy11784         87 HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ-GAVPD---IITVGKPM  162 (284)
Q Consensus        87 ~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~-g~~pD---iv~~sK~l  162 (284)
                      ....+.++++-.-++..|. ..+++.+++|.++|++|++++|.||+|..|...+........+ +..+.   +.++||.+
T Consensus       168 ~~~~~~~i~~~~p~NPtG~-~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  246 (418)
T d1w7la_         168 FTSRTKALVLNTPNNPLGK-VFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF  246 (418)
T ss_dssp             CCTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT
T ss_pred             ccccccceeccCcCCcccc-cccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccc
Confidence            3445665655333444554 6689999999999999999999999999875555312222112 22222   34689998


Q ss_pred             c-CCcceeEEEecHHHHHhchh--------------------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        163 G-NGMPIGAVITSRKIAESLNC--------------------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       163 ~-~G~p~gav~~~~~i~~~~~~--------------------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      + .|+++|++++++++++.+..                                      .+.++++.+.+.+.|++.  
T Consensus       247 ~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~  326 (418)
T d1w7la_         247 SATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL  326 (418)
T ss_dssp             TCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCCCcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCC
Confidence            7 58999999999998776644                                      113555666677777765  


Q ss_pred             ------cCceeEEEEec------------ccHHHHHHHHHHH-HCCcEEeecCCC---------CCEEEEEcCCCCCHHH
Q psy11784        202 ------LHIFWCLILLS------------ITYYLYRYTRRMK-EAKIIVANEGEY---------GNVLLFLPAMCLTTEN  253 (284)
Q Consensus       202 ------~G~~~~i~~~~------------~~~~~~~~~~~l~-~~Gv~~~~~~~~---------~~~lr~~p~l~~t~~~  253 (284)
                            .|+++++++..            +......+++.|+ ++||.+.|+..+         .+++|++  ++.++++
T Consensus       327 ~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis--~~~~~~~  404 (418)
T d1w7la_         327 KPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC--FVKDEAT  404 (418)
T ss_dssp             EEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE--CCCCHHH
T ss_pred             cccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEE--EcCCHHH
Confidence                  46677777630            1123566777766 579999987543         3689996  5678999


Q ss_pred             HHHHHHHHHHHH
Q psy11784        254 VLFIVSTLNRIF  265 (284)
Q Consensus       254 id~~~~~l~~~l  265 (284)
                      +++++++|++..
T Consensus       405 l~~a~~rl~~~~  416 (418)
T d1w7la_         405 LQAMDEKLRKWK  416 (418)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999997753

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.49  E-value=5.9e-13  Score=120.36  Aligned_cols=186  Identities=15%  Similarity=0.065  Sum_probs=122.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccc----cCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQT----QGAV  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~----~g~~  152 (284)
                      .+.+++..   ...+.++++-.-++-.|. ..+.+.+++|.++|++|++++|.||+|..|...|........    ....
T Consensus       164 ~~~l~~~~---~~~~~~~~l~np~NPtG~-~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
T d1bw0a_         164 LDEIRRLK---DDKTKLLIVTNPSNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETT  239 (412)
T ss_dssp             HHHHHHHC---CTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCS
T ss_pred             hHHHHhhh---hccccccccccccccccc-cchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccc
Confidence            34444433   355666655444455565 558999999999999999999999999988555531111111    1111


Q ss_pred             CcEE---Eeccccc-CCcceeEEEecHH------HHHhchh-------------------------------hhhHHHHH
Q psy11784        153 PDII---TVGKPMG-NGMPIGAVITSRK------IAESLNC-------------------------------LDDNRPSG  191 (284)
Q Consensus       153 pDiv---~~sK~l~-~G~p~gav~~~~~------i~~~~~~-------------------------------l~~~~~~~  191 (284)
                      ...+   ++||.++ .|+++|+++++++      ++.....                               .++++++.
T Consensus       240 ~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  319 (412)
T d1bw0a_         240 VPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESA  319 (412)
T ss_dssp             CCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccccCccCccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhcccccccccccccccccchhHHHH
Confidence            1122   5799998 5899999998532      2211110                               22455666


Q ss_pred             HHHHHHHHhc---------cCceeEEEEec----ccHHHHHHHHHHHH-CCcEEeecCCC--CCEEEEEcCCCCCHHHHH
Q psy11784        192 KYLVRPLGIN---------LHIFWCLILLS----ITYYLYRYTRRMKE-AKIIVANEGEY--GNVLLFLPAMCLTTENVL  255 (284)
Q Consensus       192 ~~l~~~L~~~---------~G~~~~i~~~~----~~~~~~~~~~~l~~-~Gv~~~~~~~~--~~~lr~~p~l~~t~~~id  255 (284)
                      +++.+.|.+.         .|+++++.+..    ......+++++|++ .||++.|+..+  .+++||+  ++.++++++
T Consensus       320 ~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis--~~~~~e~l~  397 (412)
T d1bw0a_         320 MYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT--TTRPVEVYR  397 (412)
T ss_dssp             HHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHH
T ss_pred             HHHHHHHHHhcCceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EcCCHHHHH
Confidence            6777777654         46666776641    12346678888875 59999997543  3689996  567899999


Q ss_pred             HHHHHHHHHHHHH
Q psy11784        256 FIVSTLNRIFTSL  268 (284)
Q Consensus       256 ~~~~~l~~~l~~~  268 (284)
                      +++++|++++++.
T Consensus       398 eal~Rl~~~l~~~  410 (412)
T d1bw0a_         398 EAVERIKAFCQRH  410 (412)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988753

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=4e-12  Score=113.78  Aligned_cols=175  Identities=13%  Similarity=0.116  Sum_probs=121.1

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE--EecccccC-
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII--TVGKPMGN-  164 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv--~~sK~l~~-  164 (284)
                      .+++.++++-.-++..|. ..+.+.+++|.++|++||+++|.||++..+...+. ........-...++  .++|.++. 
T Consensus       157 ~~~~~~~~l~nP~NPtG~-~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~~~~~~~~v~~s~sK~~~~~  234 (389)
T d2gb3a1         157 NERTKGIVLSNPCNPTGV-VYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASALSIESDKVVVIDSVSKKFSAC  234 (389)
T ss_dssp             CTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCGGGSCCTTEEEEEESTTTTTCG
T ss_pred             ccCccEEEeCCCCccccc-cchHHHHHHHHhhcccCCEEEEEeccccccccccc-cccccccccccccccccccccccCc
Confidence            445777666444555665 45999999999999999999999999988755554 22222221122233  56788875 


Q ss_pred             CcceeEEEecHH-HHHhchh------------------------------hhhHHHHHHHHHHHHHhc---------cCc
Q psy11784        165 GMPIGAVITSRK-IAESLNC------------------------------LDDNRPSGKYLVRPLGIN---------LHI  204 (284)
Q Consensus       165 G~p~gav~~~~~-i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~---------~G~  204 (284)
                      |+++|+++++.+ +.+.+..                              .++.+++.+.+.+.|++.         .|+
T Consensus       235 GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~  314 (389)
T d2gb3a1         235 GARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAF  314 (389)
T ss_dssp             GGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSS
T ss_pred             ccceeeeeccchhHHHHHhhhhhccccccccccccccccccccchhcccccccccccchhhhhhhhhhccccccCCCceE
Confidence            899999999654 4333322                              235666777777778765         566


Q ss_pred             eeEEEEecccHHHHHHHHHHHHC------CcEEeecCC-------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        205 FWCLILLSITYYLYRYTRRMKEA------KIIVANEGE-------YGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       205 ~~~i~~~~~~~~~~~~~~~l~~~------Gv~~~~~~~-------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      ++++++. . ....++++.|+++      |+.+.|+..       +.+++||+  ++.+++++++++++|.+++++.
T Consensus       315 ~~~~~lp-~-~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis--~~~~~~~l~~a~~~L~~~lk~f  387 (389)
T d2gb3a1         315 YITAELP-V-EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA--CVLEKDLLSRAIDVLMEGLKMF  387 (389)
T ss_dssp             EEEEECS-S-SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE--CCSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCC-C-CCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE--EcCCHHHHHHHHHHHHHHHHHh
Confidence            7777773 2 2466788877653      677777632       24689996  5679999999999999999875

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.44  E-value=3.6e-12  Score=114.64  Aligned_cols=183  Identities=13%  Similarity=0.099  Sum_probs=120.3

Q ss_pred             HHHHHHHHHhcCCCeeE-EEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIAT-LICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaa-vi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .+.+++.+   .+++.+ ++..| ++-.|. ..+++.+++|.++|++||+++|.||++..+...+. ........-...+
T Consensus       156 ~~~~~~~~---~~~~~~v~l~~P-~NPTG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~v  229 (395)
T d1xi9a_         156 IDDIRKKI---TDRTKAIAVINP-NNPTGA-LYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSLTKDVPV  229 (395)
T ss_dssp             HHHHHHHC---CTTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC-CCCHHHHCSSSCE
T ss_pred             HHHHHHhh---cccccEEEecCC-CCCccc-hhhHHHHHHHHhhhhhcCeeEEecccccccccccc-ccchhhcCCCCCE
Confidence            44555444   344444 45556 555665 66899999999999999999999999986533333 1221111111223


Q ss_pred             E---Eeccccc-CCcceeEEEec------HHHHHhch---h---------------------------hhhHHHHHHHHH
Q psy11784        156 I---TVGKPMG-NGMPIGAVITS------RKIAESLN---C---------------------------LDDNRPSGKYLV  195 (284)
Q Consensus       156 v---~~sK~l~-~G~p~gav~~~------~~i~~~~~---~---------------------------l~~~~~~~~~l~  195 (284)
                      +   +|||.++ .|+++|++++.      ..+.+...   .                           .+.++++.+.+.
T Consensus       230 i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~  309 (395)
T d1xi9a_         230 IVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIY  309 (395)
T ss_dssp             EEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            3   7899998 59999987653      12222111   0                           224667777888


Q ss_pred             HHHHhc---------cCceeEEEEec-ccHHHHHHHHHHH-HCCcEEeecCCC----CCEEEEEcCCCCCHHHHHHHHHH
Q psy11784        196 RPLGIN---------LHIFWCLILLS-ITYYLYRYTRRMK-EAKIIVANEGEY----GNVLLFLPAMCLTTENVLFIVST  260 (284)
Q Consensus       196 ~~L~~~---------~G~~~~i~~~~-~~~~~~~~~~~l~-~~Gv~~~~~~~~----~~~lr~~p~l~~t~~~id~~~~~  260 (284)
                      +.|+++         .|+++++++.. ......++++.++ ++||++.|+..+    .+++||+  +..+++++++++++
T Consensus       310 ~~L~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris--~~~~~e~l~eal~r  387 (395)
T d1xi9a_         310 KRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV--FLPPIEILEEAMDR  387 (395)
T ss_dssp             HHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHH
T ss_pred             HHHHhCCCceecCCCeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEE--ecCCHHHHHHHHHH
Confidence            888775         36667777741 1123456666655 679999987543    4689996  56789999999999


Q ss_pred             HHHHHHH
Q psy11784        261 LNRIFTS  267 (284)
Q Consensus       261 l~~~l~~  267 (284)
                      |.+++++
T Consensus       388 l~~~l~e  394 (395)
T d1xi9a_         388 FEKFMKE  394 (395)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998864

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.43  E-value=4.7e-12  Score=111.70  Aligned_cols=179  Identities=15%  Similarity=0.154  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhcC--CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHR--DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~--~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+++++.++...  ..++.|+++.+.+..|.+.+    +++|.++|++||+++|+||+|+ +|..+.   ....+  ..|
T Consensus       125 ~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~~---~~~~~--g~D  194 (364)
T d2e7ja1         125 PENFAQTIEETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMPV---SLKEI--GAD  194 (364)
T ss_dssp             HHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBCC---CHHHH--TCS
T ss_pred             HHHHHhhhhhhcccCCceEEEeecCCCCCceeec----chhheeccccccchhhccccch-hhhhhh---ccccc--ccc
Confidence            678888887433  34788889988888898887    9999999999999999999995 443332   11222  368


Q ss_pred             EEEec--ccccCCcceeEEEecHHHHHhchh--------------------------------------hhhHHHHHHHH
Q psy11784        155 IITVG--KPMGNGMPIGAVITSRKIAESLNC--------------------------------------LDDNRPSGKYL  194 (284)
Q Consensus       155 iv~~s--K~l~~G~p~gav~~~~~i~~~~~~--------------------------------------l~~~~~~~~~l  194 (284)
                      ++++|  |.++++-.+|++++++++.+.+..                                      +.+..++.+++
T Consensus       195 ~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  274 (364)
T d2e7ja1         195 FIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRF  274 (364)
T ss_dssp             EEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHH
T ss_pred             eeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87766  999864467889888876654321                                      11222445566


Q ss_pred             HHHHHhccCcee--------EEEEe--cc--------cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHH
Q psy11784        195 VRPLGINLHIFW--------CLILL--SI--------TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLF  256 (284)
Q Consensus       195 ~~~L~~~~G~~~--------~i~~~--~~--------~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~  256 (284)
                      .+.|+++ |+..        .+.+.  +.        ......+...+.++|+.....+ ....+|+. .+..|++|||+
T Consensus       275 ~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~-~~~~t~edid~  351 (364)
T d2e7ja1         275 AAEMEKL-GIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPG-LTRYFKLS-TYGLSDEEVDY  351 (364)
T ss_dssp             HHHHHHT-TCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTT-CCSEEEEE-CTTCCHHHHHH
T ss_pred             HHHHHHc-CCeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCceecCC-CcceEEEe-ccCCCHHHHHH
Confidence            6666653 3211        01111  10        0011234455667777654322 23455654 56789999999


Q ss_pred             HHHHHHHHHHHH
Q psy11784        257 IVSTLNRIFTSL  268 (284)
Q Consensus       257 ~~~~l~~~l~~~  268 (284)
                      ++++|++++++.
T Consensus       352 ~~~~l~ei~~~y  363 (364)
T d2e7ja1         352 VLNAFKEIIEKY  363 (364)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998763

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.2e-11  Score=109.38  Aligned_cols=162  Identities=14%  Similarity=0.142  Sum_probs=112.8

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE---Eeccccc-C
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII---TVGKPMG-N  164 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv---~~sK~l~-~  164 (284)
                      .++.+|++-+-...+|.+ .+++.++.+.+.|+ ++.++|+||.+..|.....   ........+.++   +|||.++ .
T Consensus       143 ~~~~~v~~~~pnNPtG~~-~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~---~~~~~~~~~~~iv~~S~SK~~~la  217 (354)
T d1fg7a_         143 DGVKVVYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQAS---LAGWLAEYPHLAILRTLSKAFALA  217 (354)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGC---SGGGTTTCTTEEEEEESSSTTCCG
T ss_pred             cccceeeccCCCccceeE-eeeccccccccccc-ccccccccccchhhccccc---cchhhcccccceEEeCCccccCCC
Confidence            357777777755556654 57888888887775 6777888887766633222   111222334333   7999998 7


Q ss_pred             CcceeEEEecHHHHHhchh------------------------------hhhHHHHHHHHHHHHHhc---------cCce
Q psy11784        165 GMPIGAVITSRKIAESLNC------------------------------LDDNRPSGKYLVRPLGIN---------LHIF  205 (284)
Q Consensus       165 G~p~gav~~~~~i~~~~~~------------------------------l~~~~~~~~~l~~~L~~~---------~G~~  205 (284)
                      |+++|++++++++++.+..                              ++++.+..+++.+.|.++         .|.+
T Consensus       218 GlRiGy~i~~~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f  297 (354)
T d1fg7a_         218 GLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNY  297 (354)
T ss_dssp             GGCCEEEEECHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSE
T ss_pred             ccccccccccchhhhhhhhhcCccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceE
Confidence            9999999999999887755                              224455566677777765         3556


Q ss_pred             eEEEEecccHHHHHHHHHHHHCCcEEeecCCC---CCEEEEEcCCCCCHHHHHHHHHHHH
Q psy11784        206 WCLILLSITYYLYRYTRRMKEAKIIVANEGEY---GNVLLFLPAMCLTTENVLFIVSTLN  262 (284)
Q Consensus       206 ~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---~~~lr~~p~l~~t~~~id~~~~~l~  262 (284)
                      +++++ +   ....+++.|+++||+++++..+   .+++|++.   -|++|.+.++++|+
T Consensus       298 ~~~~~-~---~~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisi---gt~ee~~~~l~aLk  350 (354)
T d1fg7a_         298 ILARF-K---ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITV---GTREESQRVIDALR  350 (354)
T ss_dssp             EEEEE-T---THHHHHHHHHHTTEECEECTTSTTCTTEEEEEC---CCHHHHHHHHHHHH
T ss_pred             EEEeC-C---CHHHHHHHHHHCCcEEecCCCCCCCCCEEEEEe---CCHHHHHHHHHHHh
Confidence            66666 2   3567899999999999876543   47999963   48899988888775

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.42  E-value=1.9e-12  Score=117.69  Aligned_cols=180  Identities=10%  Similarity=0.015  Sum_probs=121.4

Q ss_pred             HHHHHHHHHhc--CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCc-cccCccccccccCCCC
Q psy11784         77 AQAARNIMEAH--RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMG-RSGSHFWAFQTQGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~--~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~g-r~G~~~~a~~~~g~~p  153 (284)
                      +++|++.++++  .+.+++|++.......|...+    +++|.++|++||++|++|+++.++. ..+.  +.........
T Consensus       196 ~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~--~~~~~~~~~~  269 (434)
T d2z67a1         196 VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLE--KLKKAFKYRV  269 (434)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHH--HHHHHHTSCC
T ss_pred             HHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhccc--cccccccCCc
Confidence            78889988743  345788888876666777766    9999999999999999999996432 1111  1111123457


Q ss_pred             cEEEec--ccccCCcceeEEEec-HHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        154 DIITVG--KPMGNGMPIGAVITS-RKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       154 Div~~s--K~l~~G~p~gav~~~-~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      |+++++  |.++++...+++..+ +++.+.+..                             .++..++.+++.+.|+++
T Consensus       270 D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l  349 (434)
T d2z67a1         270 DAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDL  349 (434)
T ss_dssp             SEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCccccccCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh
Confidence            888776  988876666777665 444544433                             235566778888888775


Q ss_pred             ---cCc-------eeEEEEecccHHHHHHHHHHHHCCcEEeec-------------CCCCCEEEEEcCCCCCHHHHHHHH
Q psy11784        202 ---LHI-------FWCLILLSITYYLYRYTRRMKEAKIIVANE-------------GEYGNVLLFLPAMCLTTENVLFIV  258 (284)
Q Consensus       202 ---~G~-------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~-------------~~~~~~lr~~p~l~~t~~~id~~~  258 (284)
                         .|.       ...+.+. ......++...|.++||....+             ....+.+|+..+...|++|||.++
T Consensus       350 ~~~~g~~ll~~~~~~~~~~~-~~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i  428 (434)
T d2z67a1         350 SKKTGGKFLDVESPIASCIS-VNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSV  428 (434)
T ss_dssp             HHHSSCCBCCCCCSSEEEEE-CSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHH
T ss_pred             hhhcCceecCCCCCceeeee-cCCCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHH
Confidence               121       1111121 1234567888899999865321             112468999999999999999999


Q ss_pred             HHHHH
Q psy11784        259 STLNR  263 (284)
Q Consensus       259 ~~l~~  263 (284)
                      ++|++
T Consensus       429 ~~L~k  433 (434)
T d2z67a1         429 SKLEK  433 (434)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99975

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=4.2e-12  Score=115.63  Aligned_cols=189  Identities=9%  Similarity=-0.023  Sum_probs=124.4

Q ss_pred             HHHHHHHHHhcCC-CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCcc-ccC-ccccccccCCCC
Q psy11784         77 AQAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGR-SGS-HFWAFQTQGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~-~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr-~G~-~~~a~~~~g~~p  153 (284)
                      .++|++.+++... ++++|++.......|...+    +++|.++|++||++|++|+++.++-. ..+ ..++...  -..
T Consensus       180 ~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~v  253 (445)
T d3bc8a1         180 LKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARV--GRI  253 (445)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHH--SCC
T ss_pred             HHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCc--CCc
Confidence            6889998885544 4889988877777787777    99999999999999999999974311 111 0111111  135


Q ss_pred             cEEEec--ccccCCcceeEEEec-HHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc
Q psy11784        154 DIITVG--KPMGNGMPIGAVITS-RKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN  201 (284)
Q Consensus       154 Div~~s--K~l~~G~p~gav~~~-~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~  201 (284)
                      |+++++  |.++++...|+++.+ ++..+.+..                             .++..++.+++.+.|+++
T Consensus       254 d~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l  333 (445)
T d3bc8a1         254 DAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKL  333 (445)
T ss_dssp             CEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Confidence            777664  888876666777775 344443322                             224445566777777664


Q ss_pred             -------------cCceeEEEEe----cccHHHHHHHHHHHHCCcEEeec----------------------CCCCCEEE
Q psy11784        202 -------------LHIFWCLILL----SITYYLYRYTRRMKEAKIIVANE----------------------GEYGNVLL  242 (284)
Q Consensus       202 -------------~G~~~~i~~~----~~~~~~~~~~~~l~~~Gv~~~~~----------------------~~~~~~lr  242 (284)
                                   ......+.+.    .......++...|.+.||-....                      ....+.+|
T Consensus       334 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~  413 (445)
T d3bc8a1         334 AEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLN  413 (445)
T ss_dssp             HHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEE
T ss_pred             HhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEE
Confidence                         1122233332    11234567788888888732110                      01124689


Q ss_pred             EEcCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        243 FLPAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       243 ~~p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      +.++...|++|||.++++|++++++++++
T Consensus       414 i~~~~~~T~eDID~~v~~L~kilk~~rk~  442 (445)
T d3bc8a1         414 AAAAIGMKMQDVDLFIKRLDKCLNIVRKE  442 (445)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998754

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=1.5e-12  Score=115.78  Aligned_cols=176  Identities=16%  Similarity=0.169  Sum_probs=117.7

Q ss_pred             HHHHHHHHHhcCCCeeEEE-EcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccccccc--CCCC
Q psy11784         77 AQAARNIMEAHRDNIATLI-CEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQ--GAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi-~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~--g~~p  153 (284)
                      .+.+++.+.   ++...++ ..| .+..|. ..+.+.+++|.++|++||+++|.||++..+..... .......  +..-
T Consensus       142 ~~~l~~~~~---~~~~~i~~~~p-~NPtG~-~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~-~~~~~~~~~~~~~  215 (368)
T d1v2da_         142 LSALEKALT---PRTRALLLNTP-MNPTGL-VFGERELEAIARLARAHDLFLISDEVYDELYYGER-PRRLREFAPERTF  215 (368)
T ss_dssp             HHHHHTTCC---TTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCHHHHCTTTEE
T ss_pred             HHHHHHhhc---cCceEEEEcCC-CCcccc-cCCHHHHHHHHHHHHHcCCeeeechhhhhhccccc-ccccccccccccc
Confidence            455555443   4444444 445 556665 56899999999999999999999999975433222 1111111  1112


Q ss_pred             cEEEecccccC-CcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHH
Q psy11784        154 DIITVGKPMGN-GMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLG  199 (284)
Q Consensus       154 Div~~sK~l~~-G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~  199 (284)
                      .+.++||..+. |+++|++++++++++.+..                                 .+.++++.+++.+.|+
T Consensus       216 ~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~  295 (368)
T d1v2da_         216 TVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLR  295 (368)
T ss_dssp             EEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecccccccccccccccccccccccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHH
Confidence            24567877764 7999999999988776544                                 1245666677777777


Q ss_pred             hc--------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC------CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        200 IN--------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE------YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       200 ~~--------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                      +.        .|+++++++. . ..+   .+.|.++||++.|+..      ..+++|++  +..+++++++++++|.+++
T Consensus       296 ~~g~~~~~p~g~~~~~~~l~-~-~~~---~~ll~~~gI~v~pg~~F~~~~~~~~~iRis--~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         296 AMGLRVYVPEGTYFLMAELP-G-WDA---FRLVEEARVALIPASAFYLEDPPKDLFRFA--FCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             HTTCCEECCSBSSEEEEECT-T-CCH---HHHHHHTCEECEEGGGGCSSSCCTTEEEEE--CCSCHHHHHHHHHHHHHHC
T ss_pred             hcCcEEecCCceeEEEEeCC-c-cHH---HHHHHhCCEEEEechhhCCCCCCCCEEEEE--ecCCHHHHHHHHHHHHHhC
Confidence            75        3566677763 2 222   2346689999998643      34789996  5578999999999998764

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=9.2e-12  Score=112.32  Aligned_cols=167  Identities=20%  Similarity=0.137  Sum_probs=118.3

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCC
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNG  165 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G  165 (284)
                      .++++.|.+.-+.+..|.+.|    +++|.++|+++|+++++|-+|+ .|   .  .-.+.....+|++++|  |.+| +
T Consensus       161 ~~~t~lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g---~--~~id~~~~~~D~~~~s~hK~~G-p  229 (405)
T d1jf9a_         161 DEKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VM---H--HPVDVQALDCDFYVFSGHKLYG-P  229 (405)
T ss_dssp             CTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TT---T--SCCCHHHHTCSEEEEEGGGTTS-C
T ss_pred             cCCcEEEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee-cc---c--cccchhhcCCceeecccccccc-C
Confidence            467999999999999999999    9999999999999999999987 32   1  1112122458888765  9863 3


Q ss_pred             cceeEEEecHHHHHhchh--------------------------------------------------hh----hHHHHH
Q psy11784        166 MPIGAVITSRKIAESLNC--------------------------------------------------LD----DNRPSG  191 (284)
Q Consensus       166 ~p~gav~~~~~i~~~~~~--------------------------------------------------l~----~~~~~~  191 (284)
                      ..+|++..+++..+.+..                                                  ++    +...+.
T Consensus       230 ~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~  309 (405)
T d1jf9a_         230 TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLM  309 (405)
T ss_dssp             SSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            458899999988664322                                                  11    233334


Q ss_pred             HHHHHHHHhc----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC----------CCCEEEEEcCCCCCH
Q psy11784        192 KYLVRPLGIN----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE----------YGNVLLFLPAMCLTT  251 (284)
Q Consensus       192 ~~l~~~L~~~----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~~~lr~~p~l~~t~  251 (284)
                      +++.+.++.+          .+..+.+.+.  ......+...|.++||.++.+..          ..+.+|++++...|+
T Consensus       310 ~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~--~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~  387 (405)
T d1jf9a_         310 HYALSQLESVPDLTLYGPQNRLGVIAFNLG--KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTH  387 (405)
T ss_dssp             HHHHHHHTTSTTEEEESCTTCCSEEEEEET--TCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCH
T ss_pred             HHHHhhhhcCCcccccCCcCcCcEEEEEcC--CCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCH
Confidence            4444444443          2334455552  22355677888899999875421          246899999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11784        252 ENVLFIVSTLNRIFTS  267 (284)
Q Consensus       252 ~~id~~~~~l~~~l~~  267 (284)
                      +|||.+++.|+++.+-
T Consensus       388 eDid~l~~~l~~i~r~  403 (405)
T d1jf9a_         388 EEVDRLVTGLQRIHRL  403 (405)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999888764

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.9e-12  Score=111.94  Aligned_cols=181  Identities=17%  Similarity=0.152  Sum_probs=121.6

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT  157 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~  157 (284)
                      +.+++.+...  .+..|.+--+.+..|.+.+    +++|.++|++||+++++|.+|+ +|   .  ...+......|+++
T Consensus       134 ~~~~~~~~~~--~~~~v~~~~~~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs-~g---~--~~~d~~~~~~D~~~  201 (388)
T d1h0ca_         134 QEVEEGLAQH--KPVLLFLTHGESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS-LG---G--TPLYMDRQGIDILY  201 (388)
T ss_dssp             HHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHTTTCEEEEECTTT-TT---T--SCCCTTTTTCSEEE
T ss_pred             HHHHHHhccC--CcceEEEeeeeeccccccC----HHHHHHHhhcccccceeccccc-cc---c--ccccccccccceec
Confidence            3444444422  3455666667778898888    9999999999999999999997 32   1  12233344568877


Q ss_pred             ec--ccccCCcceeEEEecHHHHHhchh---------------------------------------------------h
Q psy11784        158 VG--KPMGNGMPIGAVITSRKIAESLNC---------------------------------------------------L  184 (284)
Q Consensus       158 ~s--K~l~~G~p~gav~~~~~i~~~~~~---------------------------------------------------l  184 (284)
                      ++  |++++-..++.+..+++..+.+..                                                   +
T Consensus       202 ~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~  281 (388)
T d1h0ca_         202 SGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGL  281 (388)
T ss_dssp             EESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             ccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhcc
Confidence            65  888754456777777776554321                                                   1


Q ss_pred             ----hhHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHHC-CcEEeecC--CCCCEEEEE-
Q psy11784        185 ----DDNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKEA-KIIVANEG--EYGNVLLFL-  244 (284)
Q Consensus       185 ----~~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~~-Gv~~~~~~--~~~~~lr~~-  244 (284)
                          ++..++.+++++.+...            ...++.+.+ |+.....++.+.|+++ ||.+..+.  ..++++|+. 
T Consensus       282 ~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~-p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~  360 (388)
T d1h0ca_         282 ENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAV-PAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGL  360 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEEC-CTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEEC
T ss_pred             ccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEEC-CCCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeC
Confidence                13444555666666553            112334444 4444577888888765 99887642  245789998 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        245 PAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       245 p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      .....|++|||.++++|+++++++.++
T Consensus       361 ~g~~~t~edid~li~aL~~~L~~l~k~  387 (388)
T d1h0ca_         361 LGCNATRENVDRVTEALRAALQHCPKK  387 (388)
T ss_dssp             CGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            567789999999999999999998654

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.35  E-value=4.5e-11  Score=107.78  Aligned_cols=176  Identities=13%  Similarity=0.120  Sum_probs=124.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+   .++++.|.+-.+++..|.+.|    +++|.++|+++|+++++|=+|+ +|.     .-.+.....+|++
T Consensus       153 ~~~l~~~~---~~~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~-----~~id~~~~~~D~~  219 (408)
T d1t3ia_         153 LEHFKTLL---SEKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APH-----YPLDVQLIDCDWL  219 (408)
T ss_dssp             HHHHHHHC---CTTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTT-----SCCCHHHHTCSEE
T ss_pred             HHHhhhcc---CCCceEEEEecccccccccCc----HHHHhhhhhccCceeeecccee-ccc-----ccccccccCCceE
Confidence            34555544   467999999999999999999    9999999999999999998886 332     1122222357988


Q ss_pred             Eec--ccccCCcceeEEEecHHHHHhchh-------------------------------------------------hh
Q psy11784        157 TVG--KPMGNGMPIGAVITSRKIAESLNC-------------------------------------------------LD  185 (284)
Q Consensus       157 ~~s--K~l~~G~p~gav~~~~~i~~~~~~-------------------------------------------------l~  185 (284)
                      +++  |.+ |+-.+|+++.+++.......                                                 ++
T Consensus       220 ~~s~hK~~-gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~  298 (408)
T d1t3ia_         220 VASGHKMC-APTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGME  298 (408)
T ss_dssp             EEEGGGTT-SCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             Eecccccc-CCCCccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHH
Confidence            776  874 44458999999888654321                                                 12


Q ss_pred             ----hHHHHHHHHHHHHHhc--------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC----------CC
Q psy11784        186 ----DNRPSGKYLVRPLGIN--------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG----------EY  237 (284)
Q Consensus       186 ----~~~~~~~~l~~~L~~~--------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~  237 (284)
                          +..++.+++.+.+.+.              .+.++.+.+.  ......+.+.|.++||.++.+.          ..
T Consensus       299 ~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~--~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~  376 (408)
T d1t3ia_         299 NIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA--GLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDA  376 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET--TBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTC
T ss_pred             HHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeC--CCCHHHHHHHHhhCCcEEecCcccccHHHHhhcC
Confidence                3345555666666554              1233444442  2245678888889999987532          12


Q ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        238 GNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       238 ~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      .+.+||+++...|++|||.+++.|+++++.+
T Consensus       377 ~g~vRiS~~~ynt~~did~li~~L~~~~~~f  407 (408)
T d1t3ia_         377 SGSARASLYFYNTKEEIDLFLQSLQATIRFF  407 (408)
T ss_dssp             CCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4679999999999999999999999988753

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.33  E-value=8.5e-12  Score=112.69  Aligned_cols=178  Identities=15%  Similarity=0.108  Sum_probs=114.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCc--ccccc-ccCC-C
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSH--FWAFQ-TQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~--~~a~~-~~g~-~  152 (284)
                      .+.+++.+....++...+++-+-++-.|. +++++.+++|.++|++||+++|.||+|..+...+..  .++.. .... .
T Consensus       170 ~~~~~~~~~~~~~~~~~il~~~P~NPTG~-v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  248 (412)
T d1ajsa_         170 LQGFLSDLENAPEFSIFVLHACAHNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGF  248 (412)
T ss_dssp             HHHHHHHHHHSCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccCCcEEEEecCCCCCcCC-CCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcc
Confidence            44555555545566667777665666665 679999999999999999999999999988544421  11111 1111 1


Q ss_pred             Cc--EEEecccccC-CcceeEEEecHHHHHhchh--------------------------------------------hh
Q psy11784        153 PD--IITVGKPMGN-GMPIGAVITSRKIAESLNC--------------------------------------------LD  185 (284)
Q Consensus       153 pD--iv~~sK~l~~-G~p~gav~~~~~i~~~~~~--------------------------------------------l~  185 (284)
                      ..  +.++||.++. |+++|++++..+..+.+..                                            .+
T Consensus       249 ~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (412)
T d1ajsa_         249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMAD  328 (412)
T ss_dssp             CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            22  2367899885 8999999987433222110                                            12


Q ss_pred             hHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHH-HHCCcEEeecCCCCCEEEEEcCCCCCHH
Q psy11784        186 DNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRM-KEAKIIVANEGEYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~~~lr~~p~l~~t~~  252 (284)
                      +++++.+.+.+.|+++            .|+|..+.+.      .+++++| .++||++.|++      ||..+ ..+++
T Consensus       329 ~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls------~~~v~~L~~e~gV~~vpg~------Ri~~a-g~~~~  395 (412)
T d1ajsa_         329 RILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN------PKQVEYLINQKHIYLLPSG------RINMC-GLTTK  395 (412)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC------HHHHHHHHHTTCEECCTTS------EEEGG-GCCTT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCC------HHHHHHHHHhCCEEEeCCC------eEEec-cCCHH
Confidence            3555566666667664            3444333221      2344555 46799998643      77543 35788


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11784        253 NVLFIVSTLNRIFTSL  268 (284)
Q Consensus       253 ~id~~~~~l~~~l~~~  268 (284)
                      +|+.++++|+++++++
T Consensus       396 ~i~~~a~aI~~av~~~  411 (412)
T d1ajsa_         396 NLDYVATSIHEAVTKI  411 (412)
T ss_dssp             THHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999876

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=2.5e-11  Score=108.56  Aligned_cols=177  Identities=14%  Similarity=0.087  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      ++.+++.+.   +++++|++.-+.+..|.+.+    +++|.++|++||+++++|.+|+ +|..     -.+.....+|++
T Consensus       133 ~~~~~~~i~---~~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~-----~~d~~~~~~D~~  199 (391)
T d1p3wa_         133 LKELEAAMR---DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL-----PIDLSQLKVDLM  199 (391)
T ss_dssp             HHHHHHHCC---TTEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTB-----CCCTTTSCCSEE
T ss_pred             HHHHHHhCC---CCcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCc-----cccchhcccccc
Confidence            556666554   67999999999999999988    9999999999999999999996 3321     112223457776


Q ss_pred             Ee--cccccCCcceeEEEecHHHHHhchh--------------------------------------hhhHHHHHHHHHH
Q psy11784        157 TV--GKPMGNGMPIGAVITSRKIAESLNC--------------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       157 ~~--sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------------l~~~~~~~~~l~~  196 (284)
                      ++  .|.+| +..+|++.++++.......                                      .+++++...++.+
T Consensus       200 ~~s~~k~~g-~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  278 (391)
T d1p3wa_         200 SFSGHKIYG-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWN  278 (391)
T ss_dssp             EEESTTTTS-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccC-CCceEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHH
Confidence            54  46653 3346777777765433221                                      1233444455555


Q ss_pred             HHHhc----------c--CceeEEEEecccHHHHHHHHHHHHCCcEEeecC------C---------------CCCEEEE
Q psy11784        197 PLGIN----------L--HIFWCLILLSITYYLYRYTRRMKEAKIIVANEG------E---------------YGNVLLF  243 (284)
Q Consensus       197 ~L~~~----------~--G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~---------------~~~~lr~  243 (284)
                      +|..+          .  .....+.+  .......+...+.  ++.++.+.      .               ..+.+|+
T Consensus       279 ~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRi  354 (391)
T d1p3wa_         279 GIKDIEEVYLNGDLEHGAPNILNVSF--NYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRF  354 (391)
T ss_dssp             TTTTSTTEEECSCTTTSCTTEEEEEE--TTSCHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEE
T ss_pred             HHHhhcCeeecccccccCceEEEEEe--CCCChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEE
Confidence            55443          1  11112222  1223445555553  33332210      0               1247999


Q ss_pred             EcCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy11784        244 LPAMCLTTENVLFIVSTLNRIFTSLQMD  271 (284)
Q Consensus       244 ~p~l~~t~~~id~~~~~l~~~l~~~~~~  271 (284)
                      +++...|++|||.+++.|+++++++++-
T Consensus       355 S~~~~nt~edid~l~~~l~~~l~~lr~~  382 (391)
T d1p3wa_         355 SLGRFTTEEEIDYTIELVRKSIGRLRDL  382 (391)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988643

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.31  E-value=2.7e-11  Score=108.95  Aligned_cols=175  Identities=16%  Similarity=0.107  Sum_probs=115.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcc--c-cccccCCCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHF--W-AFQTQGAVP  153 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~--~-a~~~~g~~p  153 (284)
                      .+.+.+.+....++..++++-+-++-.|. .++.+.+++|.++|++|++++|.||+|.++...+...  . ........+
T Consensus       162 ~~~~~~~~~~~~~~~~~iii~~p~NPTG~-~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  240 (401)
T d7aata_         162 FTGAMEDISKIPEKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI  240 (401)
T ss_dssp             HHHHHHHHTTSCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCceEEEEecCCCCCccc-cCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhc
Confidence            45555566544556777777666666776 5699999999999999999999999999885443210  0 111111222


Q ss_pred             c---EEEeccccc-CCcceeEEEecHHHHHhchh--------------------------------------------hh
Q psy11784        154 D---IITVGKPMG-NGMPIGAVITSRKIAESLNC--------------------------------------------LD  185 (284)
Q Consensus       154 D---iv~~sK~l~-~G~p~gav~~~~~i~~~~~~--------------------------------------------l~  185 (284)
                      .   +..+||.++ .|+++|++++..++.+....                                            .+
T Consensus       241 ~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  320 (401)
T d7aata_         241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMAD  320 (401)
T ss_dssp             CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             ccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            2   346789988 58999999987655443211                                            11


Q ss_pred             hHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEcCCCCCHH
Q psy11784        186 DNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p~l~~t~~  252 (284)
                      +++++.+.+.+.|++.            .|+|.++.+.      .+++++|+ ++||++.|+      +||+.+ .++++
T Consensus       321 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls------~e~~~~L~~e~gV~~~pg------~Ris~a-~~~~~  387 (401)
T d7aata_         321 RIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK------PEQVERLTKEFSIYMTKD------GRISVA-GVASS  387 (401)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC------HHHHHHHHHHHCEECCTT------CEEEGG-GCCTT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCC------HHHHHHHHHhCCEEECCC------cEEEec-cCCHH
Confidence            3455566666677664            4555554442      24556664 679999864      377643 36888


Q ss_pred             HHHHHHHHHHHHH
Q psy11784        253 NVLFIVSTLNRIF  265 (284)
Q Consensus       253 ~id~~~~~l~~~l  265 (284)
                      +|+.++++|++++
T Consensus       388 ~i~~la~ai~~v~  400 (401)
T d7aata_         388 NVGYLAHAIHQVT  400 (401)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            8999999988875

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.23  E-value=1.1e-10  Score=105.24  Aligned_cols=177  Identities=13%  Similarity=0.096  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcccc------ccccC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWA------FQTQG  150 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a------~~~~g  150 (284)
                      .+.+++.+...+....++++-+-++-.|. .++++.+++|.++|++|++++|.||+|.+|...+....+      ....+
T Consensus       163 ~~~~~~~~~~~~~~~~~i~i~~P~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  241 (412)
T d1yaaa_         163 LNGFLNAIQKAPEGSIFVLHSCAHNPTGL-DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLS  241 (412)
T ss_dssp             HHHHHHHHHHSCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTT
T ss_pred             chhhhcccccCCCceEEEEecCCCCCccc-cCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccc
Confidence            34555556555556677777666777776 569999999999999999999999999988554421111      11122


Q ss_pred             CCCcEE---Eeccccc-CCcceeEEEecHHHHHhch-------------------------h------------------
Q psy11784        151 AVPDII---TVGKPMG-NGMPIGAVITSRKIAESLN-------------------------C------------------  183 (284)
Q Consensus       151 ~~pDiv---~~sK~l~-~G~p~gav~~~~~i~~~~~-------------------------~------------------  183 (284)
                      ..+..+   .+||.++ .|+++|+++++.++.+.+.                         +                  
T Consensus       242 ~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  321 (412)
T d1yaaa_         242 TVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHK  321 (412)
T ss_dssp             TTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             cCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHH
Confidence            333333   6799998 5999999998743321100                         0                  


Q ss_pred             -----hhhHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEc
Q psy11784        184 -----LDDNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLP  245 (284)
Q Consensus       184 -----l~~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p  245 (284)
                           .++++++.+.+.+.|++.            .|++.++.+.      .+++++|+ ++||++.+++      ||..
T Consensus       322 ~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls------~e~~~~L~~e~~V~~~~g~------Ris~  389 (412)
T d1yaaa_         322 DMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT------PQMVKRLEETHAVYLVASG------RASI  389 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC------HHHHHHHHHHHCEECCTTS------EEEG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCcC------HHHHHHHHHhCCEEECCCC------EEEe
Confidence                 124555566666666654            3444443331      24566665 6799887632      6754


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q psy11784        246 AMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       246 ~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      + .++++.|+.+.++|.++++.
T Consensus       390 ~-g~~~~~i~~l~~ai~~v~k~  410 (412)
T d1yaaa_         390 A-GLNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             G-GCCTTTHHHHHHHHHHHHHH
T ss_pred             c-cCCHHHHHHHHHHHHHHHHh
Confidence            3 36788899999999988764

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.22  E-value=1.5e-10  Score=106.04  Aligned_cols=192  Identities=10%  Similarity=0.019  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhcCC-CeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccC-----
Q psy11784         77 AQAARNIMEAHRD-NIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQG-----  150 (284)
Q Consensus        77 ~~~l~~~i~~~~~-~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g-----  150 (284)
                      .+.|++.|+.+.. .++.+++|...+.+|..+.+.+.+++|+++|++||+.|++|+++..-...........+.+     
T Consensus       160 ~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~  239 (456)
T d1c7ga_         160 LNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKD  239 (456)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHH
T ss_pred             HHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhh
Confidence            7889999986544 4889999998888888899999999999999999999999999751100000000000111     


Q ss_pred             ------CCCcEEEe--cccccCCcce-eEEEec-HHHHHhchh----------------------------------hhh
Q psy11784        151 ------AVPDIITV--GKPMGNGMPI-GAVITS-RKIAESLNC----------------------------------LDD  186 (284)
Q Consensus       151 ------~~pDiv~~--sK~l~~G~p~-gav~~~-~~i~~~~~~----------------------------------l~~  186 (284)
                            -.-|++++  +|.+++  +. |+++++ +++++..+.                                  +++
T Consensus       240 i~~~~~~~ad~~s~s~~K~~~~--~~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~  317 (456)
T d1c7ga_         240 IVHEMFSYADGCTMSGKKDCLV--NIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEH  317 (456)
T ss_dssp             HHHHHHTTCSEEEEETTTTTCC--SSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hccccccccccEEEeccccccc--cceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHH
Confidence                  12577655  466653  33 455554 455554432                                  112


Q ss_pred             HHHHHHHHHHHHHhc--------cCceeEEEEe------c-ccHHHHHHHHHH-HHCCcEEeecC---------------
Q psy11784        187 NRPSGKYLVRPLGIN--------LHIFWCLILL------S-ITYYLYRYTRRM-KEAKIIVANEG---------------  235 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~--------~G~~~~i~~~------~-~~~~~~~~~~~l-~~~Gv~~~~~~---------------  235 (284)
                      ..++.++|.+.|.+.        .+..+.++..      + ....+..+...+ .+.||...+.+               
T Consensus       318 r~~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~  397 (456)
T d1c7ga_         318 RVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHR  397 (456)
T ss_dssp             HHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCC
T ss_pred             HHHHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccC
Confidence            344557888888875        2222233321      1 111234444444 46788654321               


Q ss_pred             CCCCEEEEEcC-CCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        236 EYGNVLLFLPA-MCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       236 ~~~~~lr~~p~-l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      +..+.+||+.| ...|+++||.++++|+++.++..+
T Consensus       398 ~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~  433 (456)
T d1c7ga_         398 PKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKED  433 (456)
T ss_dssp             CSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGG
T ss_pred             CccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhh
Confidence            12246899877 467999999999999998876543

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.22  E-value=7.5e-10  Score=97.25  Aligned_cols=168  Identities=12%  Similarity=0.122  Sum_probs=117.5

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCC
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNG  165 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G  165 (284)
                      ..++..|.+-.+....|.+.+    +++|.++|++||+++++|-+|+ +|..     ..+......|+++++  |+++|.
T Consensus       125 ~~~~~~v~~~~~~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs-~G~~-----~~d~~~~~~D~~~~s~~K~l~gp  194 (361)
T d1m32a_         125 DPTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGI-----PMDIAALHIDYLISSANKCIQGV  194 (361)
T ss_dssp             CTTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTS-----CCCTTTTTCSEEEEESSSTTCCC
T ss_pred             ccCccceEEEeeecccccchh----hhhhhhhhcccceeeEeecccc-cCcc-----cccccccccceEEeeecccccCC
Confidence            456777888888888899998    9999999999999999999997 3321     223334567998886  988764


Q ss_pred             cceeEEEecHHHHHhchh---------------------------------------------------hhhHHHHHHHH
Q psy11784        166 MPIGAVITSRKIAESLNC---------------------------------------------------LDDNRPSGKYL  194 (284)
Q Consensus       166 ~p~gav~~~~~i~~~~~~---------------------------------------------------l~~~~~~~~~l  194 (284)
                      ..+|++..+++..+....                                                   ..+.....+.+
T Consensus       195 ~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l  274 (361)
T d1m32a_         195 PGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSL  274 (361)
T ss_dssp             SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence            558889999888765543                                                   01233344445


Q ss_pred             HHHHHhc-----------cCceeEEEEec-ccHHHHHHHHHHHHCCcEEeecCC-CCCEEEEEcCCCCCHHHHHHHHHHH
Q psy11784        195 VRPLGIN-----------LHIFWCLILLS-ITYYLYRYTRRMKEAKIIVANEGE-YGNVLLFLPAMCLTTENVLFIVSTL  261 (284)
Q Consensus       195 ~~~L~~~-----------~G~~~~i~~~~-~~~~~~~~~~~l~~~Gv~~~~~~~-~~~~lr~~p~l~~t~~~id~~~~~l  261 (284)
                      .+.++..           ...++.+.+.. ......++.+.|.++|+++.++.. .++.+|+..--.++++|||+++++|
T Consensus       275 ~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al  354 (361)
T d1m32a_         275 VAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAI  354 (361)
T ss_dssp             HHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHH
T ss_pred             HHHHhhcCCcccCChhhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            5555443           11233444321 123467899999999999987544 3568899732256999999999999


Q ss_pred             HHHH
Q psy11784        262 NRIF  265 (284)
Q Consensus       262 ~~~l  265 (284)
                      +++|
T Consensus       355 ~~~L  358 (361)
T d1m32a_         355 RTAM  358 (361)
T ss_dssp             HHHC
T ss_pred             HHHc
Confidence            8875

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=8e-11  Score=105.54  Aligned_cols=175  Identities=14%  Similarity=0.075  Sum_probs=113.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccc-ccc----ccCC
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFW-AFQ----TQGA  151 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~-a~~----~~g~  151 (284)
                      ...+++......++..++++-+-++-.|. .++++.+++|.++|++|++++|.||+|.++...+.... ...    ....
T Consensus       159 ~~~~~~~~~~~~~~~~~i~~~~P~NPTG~-~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  237 (396)
T d2q7wa1         159 FDALINSLNEAQAGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKE  237 (396)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSC
T ss_pred             cchHHHHHHHhccCcEEEEecCCcCCcCe-ecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccc
Confidence            34444444444455666666655555665 66999999999999999999999999998854332111 111    1111


Q ss_pred             CCcEEEecccccC-CcceeEEEecHHHHHhchh--------------------------------------------hhh
Q psy11784        152 VPDIITVGKPMGN-GMPIGAVITSRKIAESLNC--------------------------------------------LDD  186 (284)
Q Consensus       152 ~pDiv~~sK~l~~-G~p~gav~~~~~i~~~~~~--------------------------------------------l~~  186 (284)
                      ..-+..++|.++. |+++|++++.....+.+..                                            .++
T Consensus       238 ~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (396)
T d2q7wa1         238 LIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQR  317 (396)
T ss_dssp             EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CH
T ss_pred             ccccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            2223467899874 8999999997654332211                                            125


Q ss_pred             HHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        187 NRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      ++++.+.+.+.|++.            .|+|.++.+.      .+++++|+ ++||++.+++      ||..+ .+++++
T Consensus       318 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~------~e~~~~L~~e~gV~~~~g~------Ri~~a-~l~~~~  384 (396)
T d2q7wa1         318 IQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT------KEQVLRLREEFGVYAVASG------RVNVA-GMTPDN  384 (396)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC------HHHHHHHHHHHCEECCTTC------EEEGG-GCCTTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC------HHHHHHHHHhCCEEECCCC------EEEec-CCCHHH
Confidence            666777778887775            4555554442      24566665 6799988643      77543 457889


Q ss_pred             HHHHHHHHHHHH
Q psy11784        254 VLFIVSTLNRIF  265 (284)
Q Consensus       254 id~~~~~l~~~l  265 (284)
                      |+.++++|.+++
T Consensus       385 i~~~~~ai~~v~  396 (396)
T d2q7wa1         385 MAPLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999988763

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=8e-11  Score=105.08  Aligned_cols=181  Identities=13%  Similarity=0.123  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD--  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD--  154 (284)
                      ++++++.+   .+++.++++-+-..-.|. +.+.+.+++|.++|++++++++.||++.-+-..+............+|  
T Consensus       149 ~~~l~~~~---~~~~~~i~l~~P~NPtG~-v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (382)
T d1u08a_         149 WQEFAALL---SERTRLVILNTPHNPSAT-VWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERA  224 (382)
T ss_dssp             HHHHHHHC---CTTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTE
T ss_pred             HHHHhhhh---ccCccEEEECCCCccccc-ccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcE
Confidence            44555433   356666665433445565 568889999999999999999999998744222210111111101122  


Q ss_pred             --EEEeccccc-CCcceeEEEecHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        155 --IITVGKPMG-NGMPIGAVITSRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       155 --iv~~sK~l~-~G~p~gav~~~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                        +..+||.++ .|+++|++++++++.+.+..                               .+.++++.+.+.+.++.
T Consensus       225 i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (382)
T d1u08a_         225 VAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE  304 (382)
T ss_dssp             EEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS
T ss_pred             EEEeeccccccCCcccchhhhccchhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence              346789997 68999999999988876644                               12444555555555544


Q ss_pred             c--------cCceeEEEEec-ccHHHHHHHHHHH-HCCcEEeecCCC------CCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        201 N--------LHIFWCLILLS-ITYYLYRYTRRMK-EAKIIVANEGEY------GNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       201 ~--------~G~~~~i~~~~-~~~~~~~~~~~l~-~~Gv~~~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .        .|+++++.+.. ......+++++|+ ++||++.|+..+      .+++|++  ++.+++++++++++|++
T Consensus       305 ~g~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris--~~~~~e~l~~al~RL~~  381 (382)
T d1u08a_         305 SRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC--FAKKESTLLAAAERLRQ  381 (382)
T ss_dssp             SSCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE--CCSCHHHHHHHHHHHTT
T ss_pred             CCcEEecCCceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEE--EeCCHHHHHHHHHHHhC
Confidence            3        56677777741 1245677888876 679999987443      2579996  45689999999999864

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.18  E-value=3e-10  Score=101.46  Aligned_cols=164  Identities=14%  Similarity=0.087  Sum_probs=111.3

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCC
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNG  165 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G  165 (284)
                      .+++..|.+-.+.+..|.+.|    +++|.++|+++|+++++|=+|+ +|.     .........+|+++++  |.+.+|
T Consensus       162 ~~~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~-----~~~~~~~~~~d~~~~s~~K~~~~~  231 (404)
T d1qz9a_         162 DQDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGA-----VPVDLHQAGADYAIGCTYKYLNGG  231 (404)
T ss_dssp             STTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTT-----SCCCHHHHTCSEEEECSSSTTCCC
T ss_pred             CCCceEEEEecccccccceec----HHHHhccccccccceeEEeecc-ccc-----cccccccccceEEEEechhhcccC
Confidence            467999999999999999999    9999999999999999999997 332     1122223456776654  877654


Q ss_pred             c-ceeEEEecHHHHHhchh---------------------------------------------------hhhH----HH
Q psy11784        166 M-PIGAVITSRKIAESLNC---------------------------------------------------LDDN----RP  189 (284)
Q Consensus       166 ~-p~gav~~~~~i~~~~~~---------------------------------------------------l~~~----~~  189 (284)
                      - -.|++..+++..+.+..                                                   .+..    ..
T Consensus       232 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  311 (404)
T d1qz9a_         232 PGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLA  311 (404)
T ss_dssp             TTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            2 35666666665543321                                                   1122    22


Q ss_pred             HHHHHHHHHHhc----------------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEc-CCCCCHH
Q psy11784        190 SGKYLVRPLGIN----------------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLP-AMCLTTE  252 (284)
Q Consensus       190 ~~~~l~~~L~~~----------------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p-~l~~t~~  252 (284)
                      ....+...+..+                .+.++.+.. +   ....+.+.|.++||++...  .++.|||+| ++..|++
T Consensus       312 ~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~-~---~~~~v~~~L~~~gi~~~~r--~~~~lRiS~~h~ynt~~  385 (404)
T d1qz9a_         312 LTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEH-P---EGYAVIQALIDRGVIGDYR--EPRIMRFGFTPLYTTFT  385 (404)
T ss_dssp             HHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEEC-T---THHHHHHHHHTTTEECEEE--TTTEEEEECCTTTCCHH
T ss_pred             hHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEec-C---CHHHHHHHHHHCCCEEeec--CCCeEEEECCCCCCCHH
Confidence            222222222221                233444443 2   3667889999999987542  257899999 6888999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11784        253 NVLFIVSTLNRIFTS  267 (284)
Q Consensus       253 ~id~~~~~l~~~l~~  267 (284)
                      |||++++.|++++++
T Consensus       386 did~~~~~L~~vl~~  400 (404)
T d1qz9a_         386 EVWDAVQILGEILDR  400 (404)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999875

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.17  E-value=9.1e-10  Score=96.32  Aligned_cols=155  Identities=15%  Similarity=0.078  Sum_probs=105.5

Q ss_pred             eeEE-EEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCc---EEEeccccc-CC
Q psy11784         91 IATL-ICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPD---IITVGKPMG-NG  165 (284)
Q Consensus        91 vaav-i~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD---iv~~sK~l~-~G  165 (284)
                      ..++ +..| .+-.|... +++.+   .+ +.++++++|.||++..+..... ...   ....+.   +.++||.++ .|
T Consensus       139 ~~~l~l~nP-~NPtG~~~-s~~~l---~~-~~~~~~~ii~Dd~~~~~~~~~~-~~~---~~~~~~~i~~~S~SK~~~~~G  208 (334)
T d2f8ja1         139 GDVVFIPNP-NNPTGHVF-EREEI---ER-ILKTGAFVALDEAYYEFHGESY-VDF---LKKYENLAVIRTFSKAFSLAA  208 (334)
T ss_dssp             TEEEEEESS-CTTTCCCC-CHHHH---HH-HHTTTCEEEEECTTGGGTCCCC-GGG---GGTCSSEEEEEESTTTSSCTT
T ss_pred             ceEEEeccc-ccccceee-cHHHh---hc-cccceeEEeecccchhhccccc-ccc---cccCceEEEEecCccccchhh
Confidence            3444 4455 55566655 44443   33 4578999999999875532221 111   111222   237899988 68


Q ss_pred             cceeEEEecHHHHHhchh----------------------------hhhHHHHHHHHHHHHHhc-------cCceeEEEE
Q psy11784        166 MPIGAVITSRKIAESLNC----------------------------LDDNRPSGKYLVRPLGIN-------LHIFWCLIL  210 (284)
Q Consensus       166 ~p~gav~~~~~i~~~~~~----------------------------l~~~~~~~~~l~~~L~~~-------~G~~~~i~~  210 (284)
                      +++|++++++++++.+..                            .+.+.++.+++.+.|+++       .|.++++.+
T Consensus       209 ~R~G~~~~~~~~i~~l~~~~~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~g~f~~~~~  288 (334)
T d2f8ja1         209 QRVGYVVASEKFIDAYNRVRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRITDSRGNFVFVFM  288 (334)
T ss_dssp             TCEEEEEECHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCSSEEEEEC
T ss_pred             hhhhhcccchHHHHHHHHhhcccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCCCeECCCCceEEEEEC
Confidence            999999999999988755                            235666777788888775       455555555


Q ss_pred             ecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        211 LSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       211 ~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      .  ...+.++++.|+++||++++   +.+++|++.   -+++|+++++++|++
T Consensus       289 ~--~~~~~~~~~~L~~~GI~vr~---~~~~vRis~---g~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         289 E--KEEKERLLEHLRTKNVAVRS---FREGVRITI---GKREENDMILRELEV  333 (334)
T ss_dssp             C--HHHHHHHHHHHHHTTEECEE---ETTEEEEEC---CCHHHHHHHHHHHHH
T ss_pred             C--CCCHHHHHHHHHHCCCEECC---CCCeEEEEc---CCHHHHHHHHHHHhc
Confidence            2  24678899999999999975   358999973   478889998888764

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.16  E-value=1.5e-10  Score=103.50  Aligned_cols=173  Identities=13%  Similarity=0.048  Sum_probs=111.8

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCcc-ccccc---cCC-C
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHF-WAFQT---QGA-V  152 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~-~a~~~---~g~-~  152 (284)
                      +.+++......++...+++-+-++-.|. .++++.+++|.++|++|++++|.||+|.+|...+... .....   .+. .
T Consensus       157 ~~~~~~~~~~~~~~~i~~~~~p~NPTG~-~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  235 (394)
T d2ay1a_         157 EGMKADLAAAKKGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEV  235 (394)
T ss_dssp             HHHHHHHHTCCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSE
T ss_pred             hhHHHHHhhcccCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccc
Confidence            4445555544455666666655666665 6799999999999999999999999999885544210 01000   111 1


Q ss_pred             CcEEEecccccC-CcceeEEEecHHHHHhchh--------------------------------------------hhhH
Q psy11784        153 PDIITVGKPMGN-GMPIGAVITSRKIAESLNC--------------------------------------------LDDN  187 (284)
Q Consensus       153 pDiv~~sK~l~~-G~p~gav~~~~~i~~~~~~--------------------------------------------l~~~  187 (284)
                      ..+.++||.++. |+++|++.+.....+....                                            .+++
T Consensus       236 ~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  315 (394)
T d2ay1a_         236 LIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGM  315 (394)
T ss_dssp             EEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            223367898874 8999999987654432211                                            1245


Q ss_pred             HHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEcCCCCCHHHH
Q psy11784        188 RPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLPAMCLTTENV  254 (284)
Q Consensus       188 ~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p~l~~t~~~i  254 (284)
                      .++.+.+.+.|+++            .|+|.++.+.      .+++++|+ ++||++.+++      ||..+ .+++++|
T Consensus       316 ~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls------~~~~~~L~~~~~V~~~~g~------Ri~~a-~l~~~~i  382 (394)
T d2ay1a_         316 LRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT------PEQVKRIKEEFGIYMVGDS------RINIA-GLNDNTI  382 (394)
T ss_dssp             HHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC------HHHHHHHHHHHCEECCTTC------EEEGG-GCCTTTH
T ss_pred             HHHHHHHHHHHHHhCCCCceeeECCCceeEEecCcC------HHHHHHHHHhCCEEecCCC------EEEec-CCCHHHH
Confidence            55666677777653            4666555442      24566676 6799998642      67643 4688999


Q ss_pred             HHHHHHHHHH
Q psy11784        255 LFIVSTLNRI  264 (284)
Q Consensus       255 d~~~~~l~~~  264 (284)
                      +.+.++|.++
T Consensus       383 ~~l~~ai~~v  392 (394)
T d2ay1a_         383 PILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9988888765

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.16  E-value=9.2e-10  Score=97.14  Aligned_cols=165  Identities=18%  Similarity=0.134  Sum_probs=110.8

Q ss_pred             eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCCcce
Q psy11784         91 IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNGMPI  168 (284)
Q Consensus        91 vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G~p~  168 (284)
                      ...|.+--+..+.|.+.+    ++++.++|+++|+++++|-+|+ +|.     ...+......|+++++  |+++|+--+
T Consensus       144 ~~~v~~~~~~~~tg~~~~----i~~i~~~~~~~g~~~~vDa~~~-~g~-----~~~~~~~~~~d~~~~s~~K~~~gp~g~  213 (377)
T d1vjoa_         144 PAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGG-----VPIFLDAWGVDLAYSCSQKGLGCSPGA  213 (377)
T ss_dssp             CSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTT-----SCCCTTTTTCSEEECCSSSTTCSCSSC
T ss_pred             ceeeeeeeeeccceeeec----hhhhhhhhhhccceEEEecchh-hhh-----hhhcccccccceeeecccccccCCCEE
Confidence            444555566777888888    9999999999999999999996 432     1223334567887765  666654456


Q ss_pred             eEEEecHHHHHhchh----------------------------------------------------hhhHHHHHHHHHH
Q psy11784        169 GAVITSRKIAESLNC----------------------------------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       169 gav~~~~~i~~~~~~----------------------------------------------------l~~~~~~~~~l~~  196 (284)
                      |.+..+++..+....                                                    ..+.+++..++.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~  293 (377)
T d1vjoa_         214 SPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWE  293 (377)
T ss_dssp             EEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhh
Confidence            777778877664321                                                    1134444555666


Q ss_pred             HHHhc-----------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCC--CCCEEEEEc-CCCCCHHHHHHHHHHH
Q psy11784        197 PLGIN-----------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGE--YGNVLLFLP-AMCLTTENVLFIVSTL  261 (284)
Q Consensus       197 ~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~--~~~~lr~~p-~l~~t~~~id~~~~~l  261 (284)
                      .+...           ...++.+.+ ++.....++.+.|. ++||.+..+..  .++.+|+.+ ....|+||||+++++|
T Consensus       294 ~l~~~~~~~~~~~~~rs~~v~~~~~-p~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al  372 (377)
T d1vjoa_         294 RLEDIGLSLHVEKEYRLPTLTTVCI-PDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPAL  372 (377)
T ss_dssp             HHHHTTCCBSSCGGGBCSSEEEEEC-CTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred             hhhccCceeecChHhcCCeEEEEEC-CCCCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHH
Confidence            66553           112334444 44446778888886 45999876422  357899984 5667899999999999


Q ss_pred             HHHHH
Q psy11784        262 NRIFT  266 (284)
Q Consensus       262 ~~~l~  266 (284)
                      +++++
T Consensus       373 ~~~l~  377 (377)
T d1vjoa_         373 EQVLR  377 (377)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98873

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=2.3e-09  Score=95.03  Aligned_cols=177  Identities=12%  Similarity=0.114  Sum_probs=115.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhC--CEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIG--GVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      .+.+++.+..  ..+..+.+-.+..+.|...+    ++.+.++|++++  +++++|-+|+ +|   .  .-.+......|
T Consensus       124 ~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~g---~--~pid~~~~giD  191 (382)
T d2bkwa1         124 LELITEKLSQ--NSYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IG---C--EEFEFDEWGVD  191 (382)
T ss_dssp             HHHHHHHHHH--SCCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TT---T--SCCCTTTTTCS
T ss_pred             hhHHHHHhhh--ccchheeeeecccccccccc----chhhhhhccccccceeeeeecccc-cc---c--ccccccccCee
Confidence            3455555553  33556777777788888888    999999998875  9999999997 33   1  12222233478


Q ss_pred             EEEec--ccccCCcceeEEEecHHHHHhchh----------------------------------------------h--
Q psy11784        155 IITVG--KPMGNGMPIGAVITSRKIAESLNC----------------------------------------------L--  184 (284)
Q Consensus       155 iv~~s--K~l~~G~p~gav~~~~~i~~~~~~----------------------------------------------l--  184 (284)
                      ++++|  |+++|.-.+|+++.+++..+.+..                                              +  
T Consensus       192 ~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~  271 (382)
T d2bkwa1         192 FALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE  271 (382)
T ss_dssp             EEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred             EEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHH
Confidence            88776  999764568999999887654321                                              1  


Q ss_pred             ----------hhHHHHHHHHHHHHHhccC--------------ceeEEEEecccHHHHHHHHHHHHCCcEEeecCC---C
Q psy11784        185 ----------DDNRPSGKYLVRPLGINLH--------------IFWCLILLSITYYLYRYTRRMKEAKIIVANEGE---Y  237 (284)
Q Consensus       185 ----------~~~~~~~~~l~~~L~~~~G--------------~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~  237 (284)
                                ++.+++.+++++.+.+..+              .+..+.. +   ....+.+.|.++||.+..+..   .
T Consensus       272 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~-~---~~~~~~~~L~~~gi~i~~G~~~~~~  347 (382)
T d2bkwa1         272 ILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYV-A---DPPDVIAFLKSHGVVIAGGIHKDIG  347 (382)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEEC-S---CHHHHHHHHHHTTEECBCCCCTTTG
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcC-C---CHHHHHHHHHHCCeEEECCCChhhc
Confidence                      1334456666666654311              1223333 2   245677888899999987522   3


Q ss_pred             CCEEEEE-cCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        238 GNVLLFL-PAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       238 ~~~lr~~-p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      ++++|+. ...+.++++++.+++.|+.+...++
T Consensus       348 ~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~  380 (382)
T d2bkwa1         348 PKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ  380 (382)
T ss_dssp             GGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence            4689996 3345578889999988877666554

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.08  E-value=9.3e-09  Score=94.25  Aligned_cols=187  Identities=13%  Similarity=0.026  Sum_probs=122.8

Q ss_pred             HHHHHHHHHhc---CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCC-C
Q psy11784         77 AQAARNIMEAH---RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGA-V  152 (284)
Q Consensus        77 ~~~l~~~i~~~---~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~-~  152 (284)
                      .++|++.|++.   +..+.+|+.--.....|.+-|    +++|.++|++||++|.+|=++.|+...-. -.-....|+ .
T Consensus       219 ~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp----l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~-~~~~~~~gi~~  293 (476)
T d1js3a_         219 ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICP-EFRHLLNGVEF  293 (476)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGST-TTGGGGTTGGG
T ss_pred             HHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----HHHHHHHHHhcCcEEEEecccchhhhhhc-chhhhhcCCcc
Confidence            67888888732   222555555555556788888    99999999999999999998877632211 011112344 3


Q ss_pred             CcEEEe--cccccCCcceeEEEecHHH--HHhchh---------------------------------------------
Q psy11784        153 PDIITV--GKPMGNGMPIGAVITSRKI--AESLNC---------------------------------------------  183 (284)
Q Consensus       153 pDiv~~--sK~l~~G~p~gav~~~~~i--~~~~~~---------------------------------------------  183 (284)
                      .|.+++  -|.+..-++.|+++.++.-  ...+..                                             
T Consensus       294 aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g  373 (476)
T d1js3a_         294 ADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKG  373 (476)
T ss_dssp             CSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHH
T ss_pred             cceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhH
Confidence            688887  4988877788999887532  111110                                             


Q ss_pred             ----hhhHHHHHHHHHHHHHhccCc---------eeEEEEecccHHHHHHHHHHHHCC-cEEeecCCCC-CEEEEEcC-C
Q psy11784        184 ----LDDNRPSGKYLVRPLGINLHI---------FWCLILLSITYYLYRYTRRMKEAK-IIVANEGEYG-NVLLFLPA-M  247 (284)
Q Consensus       184 ----l~~~~~~~~~l~~~L~~~~G~---------~~~i~~~~~~~~~~~~~~~l~~~G-v~~~~~~~~~-~~lr~~p~-l  247 (284)
                          +++..+..++|.+.|++.-++         ++.+.+.+......++.+++.+.| +++.+....+ .+||++.. .
T Consensus       374 ~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~  453 (476)
T d1js3a_         374 LQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSR  453 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCC
Confidence                335667778888888775111         233444344445567888888887 4454432222 37898754 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q psy11784        248 CLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       248 ~~t~~~id~~~~~l~~~l~~~  268 (284)
                      ..|++|||.+++.|++..+++
T Consensus       454 ~Tt~~did~~~~~i~~~a~~l  474 (476)
T d1js3a_         454 KVESGHVRLAWEHIRGLAAEL  474 (476)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
Confidence            578999999999999998876

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.07  E-value=6.4e-10  Score=98.70  Aligned_cols=96  Identities=11%  Similarity=0.108  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccC--ccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGM--GRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~--gr~G~~~~a~~~~g~~pD  154 (284)
                      ++++++.+   .+++.+|+++...+..   ..+..-|++|.++|++||+++|+||+|...  +..+. . ....+|  .|
T Consensus       123 ~e~l~~~i---~~~tk~i~~~~p~n~~---~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~-~-~~~~~~--~d  192 (366)
T d2aeua1         123 VGEILNKI---DKDTLVIITGSTMDLK---VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQ-P-PALKLG--AD  192 (366)
T ss_dssp             HHHHHTTC---CTTEEEEEECBCTTSC---BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTC-C-CHHHHT--CS
T ss_pred             HHHHHHhc---CCCceEEEEEecCCCC---cCCHHHHHHHHHHhccCcEEEEEecCccccccccccC-C-CHhhcC--ce
Confidence            44444443   4678889888554432   234456999999999999999999999621  11111 1 111233  46


Q ss_pred             EEE--ecccccCCcceeEEEecHHHHHhchh
Q psy11784        155 IIT--VGKPMGNGMPIGAVITSRKIAESLNC  183 (284)
Q Consensus       155 iv~--~sK~l~~G~p~gav~~~~~i~~~~~~  183 (284)
                      +++  ++|+++ |+.+|++++++++++.+..
T Consensus       193 i~~~S~sK~~~-g~~~G~i~~~~~~i~~~~~  222 (366)
T d2aeua1         193 LVVTSTDKLME-GPRGGLLAGKKELVDKIYI  222 (366)
T ss_dssp             EEEEETTSSSS-SCSCEEEEEEHHHHHHHHH
T ss_pred             EEEeccccccc-ccceeEEEecHHHHHHHHH
Confidence            664  557665 6889999999999887754

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.3e-10  Score=104.10  Aligned_cols=175  Identities=15%  Similarity=0.075  Sum_probs=105.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccc-ccc-ccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFW-AFQ-TQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~-a~~-~~g~~pD  154 (284)
                      .+.+.+.+....+....+++-.-++-.|. +++++.+++|.++|++|++++|.||+|.++...+.... ... ..+....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  238 (397)
T d3tata_         160 FNDLLATLKTLPARSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLP  238 (397)
T ss_dssp             HHHHHHHHTTCCSSCCCEECSSSCSSSCC-CCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCC
T ss_pred             hHHHHHHhhhcccccEEEEecCCCCCCCe-eCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCc
Confidence            34444445444445555666555555665 67999999999999999999999999998843332111 111 1122223


Q ss_pred             E---EEecccccC-CcceeEEEecHHHHHhchh-------------------------------------h-------hh
Q psy11784        155 I---ITVGKPMGN-GMPIGAVITSRKIAESLNC-------------------------------------L-------DD  186 (284)
Q Consensus       155 i---v~~sK~l~~-G~p~gav~~~~~i~~~~~~-------------------------------------l-------~~  186 (284)
                      .   ..+||.++- |+++|++++.....+....                                     .       ++
T Consensus       239 ~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (397)
T d3tata_         239 ALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTR  318 (397)
T ss_dssp             CEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            3   367898875 8999999876533222111                                     0       12


Q ss_pred             HHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHHHHH-HCCcEEeecCCCCCEEEEEcCCCCCHHH
Q psy11784        187 NRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMK-EAKIIVANEGEYGNVLLFLPAMCLTTEN  253 (284)
Q Consensus       187 ~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~lr~~p~l~~t~~~  253 (284)
                      ++++.+.+.+.|...            .|+|.++.+.      .+++++|+ +.||.+.+++      ||..+ .+++++
T Consensus       319 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls------~e~~~~L~~e~~V~l~~g~------Ri~~a-~~~~~~  385 (397)
T d3tata_         319 ILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS------AAQVDRLREEFGVYLIASG------RMCVA-GLNTAN  385 (397)
T ss_dssp             HHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCC------HHHHHHHTTTTCEECCSSS------CCBTT-SCCTTT
T ss_pred             HHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcC------HHHHHHHHHhCCEEeCCCC------EEEec-cCCHHH
Confidence            222333333333322            4555555542      24566776 4699998643      66533 468899


Q ss_pred             HHHHHHHHHHHH
Q psy11784        254 VLFIVSTLNRIF  265 (284)
Q Consensus       254 id~~~~~l~~~l  265 (284)
                      |+.+.++|++++
T Consensus       386 i~~~~~ai~~v~  397 (397)
T d3tata_         386 VQRVAKAFAAVM  397 (397)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999998887763

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.04  E-value=7.9e-09  Score=91.49  Aligned_cols=168  Identities=15%  Similarity=0.149  Sum_probs=107.6

Q ss_pred             eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec--ccccCCcce
Q psy11784         91 IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNGMPI  168 (284)
Q Consensus        91 vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G~p~  168 (284)
                      +..+.+--+-...|...+    ++++.++|+++|+++++|-+++ +|-     .-.+......|++++|  |++++.--+
T Consensus       143 ~~~v~~~~~~t~tG~~~~----~~~i~~~~~~~~~~~~vD~~ss-~g~-----~pid~~~~~~d~~~~s~~K~~~gp~G~  212 (388)
T d2ch1a1         143 PKCLFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCG-----VPFYMDKWEIDAVYTGAQKVLGAPPGI  212 (388)
T ss_dssp             CSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTT-----BCCCTTTTTCCEEECCCC-CCCCCSSC
T ss_pred             cceeeeeecccccccccc----hhhhcchhccccceeeeeeeec-ccc-----cccchhccCceEEEEccccccCCCCeE
Confidence            455555556667788888    8889999999999999999997 321     1223334567888877  666653456


Q ss_pred             eEEEecHHHHHhchh-------------------------------------------hh------------hHHHHHHH
Q psy11784        169 GAVITSRKIAESLNC-------------------------------------------LD------------DNRPSGKY  193 (284)
Q Consensus       169 gav~~~~~i~~~~~~-------------------------------------------l~------------~~~~~~~~  193 (284)
                      |.+..+++..+....                                           ++            +......+
T Consensus       213 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~  292 (388)
T d2ch1a1         213 TPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQI  292 (388)
T ss_dssp             EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             EEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            777888776653321                                           00            11111222


Q ss_pred             HHHHHHhc------------cCceeEEEEecccHHHHHHHHHHHH-CCcEEeecC--CCCCEEEEE-cCCCCCHHHHHHH
Q psy11784        194 LVRPLGIN------------LHIFWCLILLSITYYLYRYTRRMKE-AKIIVANEG--EYGNVLLFL-PAMCLTTENVLFI  257 (284)
Q Consensus       194 l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~~l~~-~Gv~~~~~~--~~~~~lr~~-p~l~~t~~~id~~  257 (284)
                      +...+...            ...+..+.+ ++.....++.+.|.+ +||.+.++.  ..++.+|+. .....|+|||+.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~rs~~v~~~~~-p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~l  371 (388)
T d2ch1a1         293 LYEGLGKMGLDIFVKDPRHRLPTVTGIMI-PKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFY  371 (388)
T ss_dssp             HHHHHHHHTCCBSSCSGGGBCTTEEEEEC-CTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred             HHhhhhhcccccccCCHHHhCCeEEEEEC-CCCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHH
Confidence            22222221            122344444 444456788888876 499887643  235689998 4456689999999


Q ss_pred             HHHHHHHHHHHh
Q psy11784        258 VSTLNRIFTSLQ  269 (284)
Q Consensus       258 ~~~l~~~l~~~~  269 (284)
                      ++.|+++|+.+.
T Consensus       372 l~alke~L~~~~  383 (388)
T d2ch1a1         372 LYGFKESLKATH  383 (388)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhC
Confidence            999999998864

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=1.3e-08  Score=89.93  Aligned_cols=173  Identities=12%  Similarity=0.101  Sum_probs=113.1

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh--CCEEEEecccccCccccCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI--GGVVIADEIQCGMGRSGSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tG~gr~G~~~~a~~~~g~~pD  154 (284)
                      ++++++.+.   +++..|++--+.+..|.+.+    ++.+.++|+++  ++++++|.+|+ +|..     ..+.....+|
T Consensus       129 ~~~l~~~i~---~~t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~-----~~d~~~~~~D  195 (376)
T d1eg5a_         129 LEELEKLVD---EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI-----PFSLEKLEVD  195 (376)
T ss_dssp             HHHHHHHCC---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS-----CCCCTTTCCS
T ss_pred             HHHHHHhcC---CCceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec-cccc-----cccccccCcc
Confidence            456666654   67999999999999999988    99999998766  99999999996 4321     2222334578


Q ss_pred             EEEe--cccccCCcceeEEEecHHHHHhchh--------------------------------------hhhHHHHHHHH
Q psy11784        155 IITV--GKPMGNGMPIGAVITSRKIAESLNC--------------------------------------LDDNRPSGKYL  194 (284)
Q Consensus       155 iv~~--sK~l~~G~p~gav~~~~~i~~~~~~--------------------------------------l~~~~~~~~~l  194 (284)
                      ++++  .|.++ +...|++..+++..  +..                                      ........+++
T Consensus       196 ~~~~s~~K~~g-p~G~~~l~~~~~~~--~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (376)
T d1eg5a_         196 YASFSAHKFHG-PKGVGITYIRKGVP--IRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKL  272 (376)
T ss_dssp             EEEEEGGGGTS-CTTCEEEEECTTSC--CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ceecccceeec-CCCceeEEeccCcc--cCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhh
Confidence            7754  59864 23345555554321  110                                      11344455556


Q ss_pred             HHHHHhc-----------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecCC---------------------CCCEEE
Q psy11784        195 VRPLGIN-----------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEGE---------------------YGNVLL  242 (284)
Q Consensus       195 ~~~L~~~-----------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------~~~~lr  242 (284)
                      .++|...           ......+.+  ....+..+...|.++||.++++..                     ..+.+|
T Consensus       273 ~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iR  350 (376)
T d1eg5a_         273 VSGLMNLGAHIITPLEISLPNTLSVSF--PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR  350 (376)
T ss_dssp             HHHHHTTTCEECSCTTSBCTTEEEEEC--TTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEE
T ss_pred             ccccccccccccccccccccceeeecc--CCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEE
Confidence            6666554           111112222  123467778888889998864310                     014699


Q ss_pred             EEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        243 FLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       243 ~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      ++|+...|++|||.+++.|+++++-
T Consensus       351 iS~~~ynt~edid~l~~~L~~iv~~  375 (376)
T d1eg5a_         351 ISLCKYNTEEEVDYFLKKIEEILSF  375 (376)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998863

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=98.98  E-value=6.8e-09  Score=94.53  Aligned_cols=174  Identities=13%  Similarity=-0.013  Sum_probs=107.2

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEeccccc-CccccCccccccccC----C--CCcEEEe--c
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCG-MGRSGSHFWAFQTQG----A--VPDIITV--G  159 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG-~gr~G~~~~a~~~~g----~--~pDiv~~--s  159 (284)
                      .....+++..+.+..|.+.+    +++|.++|++||++|++||+|.. +...+.........+    .  ..|++++  .
T Consensus       172 ~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~H  247 (462)
T d1c4ka2         172 KRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVH  247 (462)
T ss_dssp             SCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHH
T ss_pred             cCCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecC
Confidence            33455666677788898888    99999999999999999999962 211111000111111    1  2377765  4


Q ss_pred             ccccCCcceeEEE-ecHHHH-------------Hhchh-----------------------------hhhHHHHHHHHHH
Q psy11784        160 KPMGNGMPIGAVI-TSRKIA-------------ESLNC-----------------------------LDDNRPSGKYLVR  196 (284)
Q Consensus       160 K~l~~G~p~gav~-~~~~i~-------------~~~~~-----------------------------l~~~~~~~~~l~~  196 (284)
                      |.+++... |+++ .++...             +.+..                             .++..++.+++++
T Consensus       248 K~lg~~~~-g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~  326 (462)
T d1c4ka2         248 KQQAGFSQ-TSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARK  326 (462)
T ss_dssp             HHSSCCTT-CEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccc-eEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            98875222 4444 332211             11100                             2244566777888


Q ss_pred             HHHhccCce-----------------------------------------------------eEEEEec----------c
Q psy11784        197 PLGINLHIF-----------------------------------------------------WCLILLS----------I  213 (284)
Q Consensus       197 ~L~~~~G~~-----------------------------------------------------~~i~~~~----------~  213 (284)
                      +++++.+.+                                                     +.+....          .
T Consensus       327 ~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~  406 (462)
T d1c4ka2         327 KLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDF  406 (462)
T ss_dssp             HHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSS
T ss_pred             HHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhc
Confidence            877651111                                                     0111100          0


Q ss_pred             cHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        214 TYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       214 ~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                      ...+..+.+.|.++||.+-..  ..+.+|+..+..+|++|+|.+++.|.++.+.+.
T Consensus       407 G~~~~~~~~~L~~~gI~~e~~--~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~  460 (462)
T d1c4ka2         407 GVPATIVANYLRDHGIIPEKS--DLNSILFLMTPAETPAKMNNLITQLLQLQRLIE  460 (462)
T ss_dssp             CCCHHHHHHHHHHTTCCCSEE--CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHcCCeeecc--CCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHh
Confidence            113567888888999977543  357899999999999999999999999877654

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=98.91  E-value=5.3e-09  Score=88.52  Aligned_cols=166  Identities=13%  Similarity=0.036  Sum_probs=94.0

Q ss_pred             eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccC-ccccccccCCCCcEEEecccccCCccee
Q psy11784         91 IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGS-HFWAFQTQGAVPDIITVGKPMGNGMPIG  169 (284)
Q Consensus        91 vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~~a~~~~g~~pDiv~~sK~l~~G~p~g  169 (284)
                      ...+++....+++|. ..+.+.+..+.+.|+++|.++++|+++.+...... ..+.........++..+++..+.+.+.+
T Consensus       131 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (340)
T d1svva_         131 IPKLVYISNTTEVGT-QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGE  209 (340)
T ss_dssp             EEEEEEEESSCTTSC-CCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCE
T ss_pred             cceeeeecccccccc-cccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccc
Confidence            444444444555454 45677789999999999999999999975321111 0111111112244556665555443333


Q ss_pred             EEEe-cHHHHHhchh-------------------------------hhhHHHHHHHHHHHHHhc--------cCceeEEE
Q psy11784        170 AVIT-SRKIAESLNC-------------------------------LDDNRPSGKYLVRPLGIN--------LHIFWCLI  209 (284)
Q Consensus       170 av~~-~~~i~~~~~~-------------------------------l~~~~~~~~~l~~~L~~~--------~G~~~~i~  209 (284)
                      .... ..........                               .++...+..++.+.|+..        .+.++.+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~~  289 (340)
T d1svva_         210 ALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPI  289 (340)
T ss_dssp             EEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBE
T ss_pred             cccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEEe
Confidence            3333 2222111111                               235666667777777775        12222333


Q ss_pred             EecccHHHHHHHHHHHHCCcEEee--cCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q psy11784        210 LLSITYYLYRYTRRMKEAKIIVAN--EGEYGNVLLFLPAMCLTTENVLFIVSTLNR  263 (284)
Q Consensus       210 ~~~~~~~~~~~~~~l~~~Gv~~~~--~~~~~~~lr~~p~l~~t~~~id~~~~~l~~  263 (284)
                      +.      ......|.+++.....  ...+.+.+||+++..+|++|||+++++|++
T Consensus       290 ~~------~~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         290 LE------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             EE------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CC------HHHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            31      2344555655443221  112357899999999999999999999976

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=1.4e-07  Score=85.72  Aligned_cols=183  Identities=14%  Similarity=0.022  Sum_probs=118.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHH------HHHhCCEEEEecccccCccccCccccccc--
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDY------IHEIGGVVIADEIQCGMGRSGSHFWAFQT--  148 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l------~~~~g~llI~DEv~tG~gr~G~~~~a~~~--  148 (284)
                      .++|++.++   .++++|++--.....|.+-|    ++++.++      |+++|+++.+|-++.|+--    .|...+  
T Consensus       189 ~~~L~~~i~---~~t~~Vv~t~gtt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~----p~~~~~~~  257 (450)
T d1pmma_         189 PKRMIEACD---ENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLA----PFVAPDIV  257 (450)
T ss_dssp             HHHHHHHCC---TTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH----HHHCTTCC
T ss_pred             HHHHHHHhh---hCceEEEeeeeeccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhcccee----eeechhhh
Confidence            567777765   45666665544555676665    5555555      5668999999999987511    122111  


Q ss_pred             --cCC-CCcEEEec--ccccCCcceeEEEecHHHH--Hhchh--------------------------------------
Q psy11784        149 --QGA-VPDIITVG--KPMGNGMPIGAVITSRKIA--ESLNC--------------------------------------  183 (284)
Q Consensus       149 --~g~-~pDiv~~s--K~l~~G~p~gav~~~~~i~--~~~~~--------------------------------------  183 (284)
                        +++ ..|.++++  |.+.+.+..|+++.+++-.  ..+..                                      
T Consensus       258 ~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~  337 (450)
T d1pmma_         258 WDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGY  337 (450)
T ss_dssp             CSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHH
Confidence              233 36777775  7776667788998875432  11100                                      


Q ss_pred             ---hhhHHHHHHHHHHHHHhccC------------c-eeEEEEecc---cHHHHHHHHHHHHCCcEEeec-----CCCCC
Q psy11784        184 ---LDDNRPSGKYLVRPLGINLH------------I-FWCLILLSI---TYYLYRYTRRMKEAKIIVANE-----GEYGN  239 (284)
Q Consensus       184 ---l~~~~~~~~~l~~~L~~~~G------------~-~~~i~~~~~---~~~~~~~~~~l~~~Gv~~~~~-----~~~~~  239 (284)
                         .++..++.++|.+.|++..+            + .+.+.+.+.   ......+.+.|.++|.++...     .....
T Consensus       338 ~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~  417 (450)
T d1pmma_         338 TKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIV  417 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcCCcE
Confidence               34677888889999987611            1 133333221   123567889999999776421     11234


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy11784        240 VLLFLPAMCLTTENVLFIVSTLNRIFTSLQM  270 (284)
Q Consensus       240 ~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~  270 (284)
                      .+|+.+--..|++++|++++.|+++++.+.+
T Consensus       418 ~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~  448 (450)
T d1pmma_         418 VMRIMCRRGFEMDFAELLLEDYKASLKYLSD  448 (450)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            7899887788999999999999999998864

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=98.77  E-value=3.9e-07  Score=80.89  Aligned_cols=173  Identities=12%  Similarity=0.151  Sum_probs=115.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +++..|++|..-+....++.    +++|.++|+++|+++++|...+.       ...+.....-.||+
T Consensus       134 ~~~~~~ai~---~~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~at-------P~~~~Pl~~GaDiv  199 (392)
T d1gc0a_         134 LQALEAAMT---PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCT-------PYLQRPLELGADLV  199 (392)
T ss_dssp             HHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTH-------HHHCCGGGGTCSEE
T ss_pred             HHHHHHhCC---CCCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEecCccC-------ccccChHHhCCCEE
Confidence            566777665   67899999999888888888    99999999999999999987652       12233333447777


Q ss_pred             E--ecccccC-C-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        157 T--VGKPMGN-G-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       157 ~--~sK~l~~-G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      +  ..|-++| | .-.|+++++++.++..+.                             +++..+++..+.+.|++.  
T Consensus       200 ihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~  279 (392)
T d1gc0a_         200 VHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQ  279 (392)
T ss_dssp             EEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             EEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5  5699987 4 567888888877654321                             335556666666666654  


Q ss_pred             ------------------------cCceeEEEEecccHHHHHHHHHHH--HCCcEE--------eec-------------
Q psy11784        202 ------------------------LHIFWCLILLSITYYLYRYTRRMK--EAKIIV--------ANE-------------  234 (284)
Q Consensus       202 ------------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv~~--------~~~-------------  234 (284)
                                              .|.++.+++....+.+.+|++.|.  ..+.-+        .|.             
T Consensus       280 V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~  359 (392)
T d1gc0a_         280 VELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERA  359 (392)
T ss_dssp             EEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHH
T ss_pred             ccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCCcceEeeccCCcChhhcCccccccccCCHHHHH
Confidence                                    467888888533345667777664  222211        110             


Q ss_pred             --CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        235 --GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       235 --~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                        +...+.||++.-+    |+.+.+++-|+++|+.
T Consensus       360 ~~Gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         360 HYGISEGLVRLSVGL----EDIDDLLADVQQALKA  390 (392)
T ss_dssp             HTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             HcCCCcCeEEEEeee----CCHHHHHHHHHHHHHh
Confidence              1133578985443    6677777777777764

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.76  E-value=5.3e-07  Score=80.17  Aligned_cols=164  Identities=12%  Similarity=0.101  Sum_probs=112.6

Q ss_pred             CCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE--ecccccC-C
Q psy11784         89 DNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT--VGKPMGN-G  165 (284)
Q Consensus        89 ~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~--~sK~l~~-G  165 (284)
                      +++..|++|...+....++.    +++|.++|+++|+++|+|...+.       ...++....-.||++  +.|-++| |
T Consensus       152 ~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~at-------P~~~~Pl~~GaDiVihS~TKy~~Ghs  220 (398)
T d1qgna_         152 KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT-------PLNQKALALGADLVLHSATKFLGGHN  220 (398)
T ss_dssp             SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC-------TTTCCTTTTTCSEEEECTTTTTTCSS
T ss_pred             ccceEEEccCccccccccch----HHHHHHHHhhcCCEEEecceeec-------cccCCchhhCCCEEEEechhhcCccc
Confidence            56899999998887777777    99999999999999999987642       123344444578875  5699987 3


Q ss_pred             -cceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc----------------
Q psy11784        166 -MPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN----------------  201 (284)
Q Consensus       166 -~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~----------------  201 (284)
                       .-.|++..+++.++.+..                           +++..+++..+.+.|++.                
T Consensus       221 dv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~  300 (398)
T d1qgna_         221 DVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPE  300 (398)
T ss_dssp             SCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTT
T ss_pred             ceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcc
Confidence             566788888888766544                           335556666666777654                


Q ss_pred             ----------cCceeEEEEecccHHHHHHHHHHH--HCCcEEe--------ec---------------CCCCCEEEEEcC
Q psy11784        202 ----------LHIFWCLILLSITYYLYRYTRRMK--EAKIIVA--------NE---------------GEYGNVLLFLPA  246 (284)
Q Consensus       202 ----------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv~~~--------~~---------------~~~~~~lr~~p~  246 (284)
                                .|.++.+++....+.+.+|++.|.  ..+.-+.        |.               +..++.||++.-
T Consensus       301 ~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG  380 (398)
T d1qgna_         301 HHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG  380 (398)
T ss_dssp             HHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC
T ss_pred             hhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEec
Confidence                      477788887545566777887764  3232211        10               113468998544


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q psy11784        247 MCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       247 l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +    |+.+.+++-|+++|+.
T Consensus       381 l----Ed~eDLi~Dl~~AL~~  397 (398)
T d1qgna_         381 V----EDFDDLKADILQALDS  397 (398)
T ss_dssp             S----SCHHHHHHHHHHHHHH
T ss_pred             c----CCHHHHHHHHHHHHhc
Confidence            4    6677788888888765

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.71  E-value=5.4e-07  Score=79.70  Aligned_cols=173  Identities=12%  Similarity=0.142  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+   .+++.+|++|...+....++.    +++|+++|+++|+++|+|....+.       +.++....-.|++
T Consensus       123 ~~~~~~ai---~~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~atP-------~~~~Pl~~GaDiV  188 (380)
T d1ibja_         123 LDEVAAAI---GPQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMSP-------VLSRPLELGADIV  188 (380)
T ss_dssp             HHHHHHHC---CSSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTCT-------TTCCGGGTTCSEE
T ss_pred             HHHHHHHh---ccCccEEEecccccccccccc----HHHHHHHHHHcCCeEEeecccccc-------ccccccccCCCEE
Confidence            45566655   367999999999888888887    999999999999999999976531       2223333447777


Q ss_pred             E--ecccccC-C-cceeEEEec-HHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 T--VGKPMGN-G-MPIGAVITS-RKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~--~sK~l~~-G-~p~gav~~~-~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +  +.|-++| | .-.|+++.+ +++.+.+..                           +++..+++..+.+.|++.   
T Consensus       189 vhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V  268 (380)
T d1ibja_         189 MHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRV  268 (380)
T ss_dssp             EEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             EecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCe
Confidence            5  5699987 3 455666665 555554433                           335566667777777754   


Q ss_pred             -----------------------cCceeEEEEecccHHHHHHHHHHH--HCCc--------EEeec--------------
Q psy11784        202 -----------------------LHIFWCLILLSITYYLYRYTRRMK--EAKI--------IVANE--------------  234 (284)
Q Consensus       202 -----------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv--------~~~~~--------------  234 (284)
                                             .|.++.+.+ ...+.+.+|++.|.  ..++        +..|.              
T Consensus       269 ~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~-~~~~~a~~f~d~l~l~~~a~SlG~~~SLi~~p~~~th~~~~~e~r~~  347 (380)
T d1ibja_         269 KKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT-GSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREA  347 (380)
T ss_dssp             CEEECTTSTTSTTHHHHTTTCSCCCSEEEEEC-SCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSS
T ss_pred             eEEeccccccCccccccccccccccccccccc-cHHHHHHHHHHhCCcCeEeeccCCccccccCchhhhhhcCCHHHHHH
Confidence                                   455666655 34456677777664  2222        11111              


Q ss_pred             -CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        235 -GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       235 -~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                       +...+.||++.-+    |+.+.+++-|+++|+.+
T Consensus       348 ~Gi~~~lvRlSvGl----E~~eDLi~Dl~qAl~~l  378 (380)
T d1ibja_         348 RGLTEDLVRISAGI----EDVDDLISDLDIAFKTF  378 (380)
T ss_dssp             SSCCTTCEEEECCS----SCHHHHHHHHHHHHHSC
T ss_pred             cCCCcCeEEEEecc----CCHHHHHHHHHHHHHhc
Confidence             1123578985443    67788888888887653

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=8.1e-07  Score=78.60  Aligned_cols=175  Identities=15%  Similarity=0.168  Sum_probs=114.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+.   +++.+|++|..-+..-.++.    +++|.++|+++|+++|+|......       +.++....-.||+
T Consensus       125 ~~~~~~~~~---~~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~atP-------~~~~Pl~~GaDiV  190 (384)
T d1cs1a_         125 EQALRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSP-------ALQNPLALGADLV  190 (384)
T ss_dssp             HHHHHHHHH---TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT-------TTCCGGGGTCSEE
T ss_pred             HHHHHhhcc---ccccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEeccccCc-------ccccccccCCCEE
Confidence            456666665   56789999998887777777    999999999999999999876421       2223333347777


Q ss_pred             E--ecccccC-C-cceeEEEec-HHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc---
Q psy11784        157 T--VGKPMGN-G-MPIGAVITS-RKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN---  201 (284)
Q Consensus       157 ~--~sK~l~~-G-~p~gav~~~-~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~---  201 (284)
                      +  ..|-++| | .-.|+++++ +++.+.+..                           +++..+++..+.+.|+..   
T Consensus       191 vhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V  270 (384)
T d1cs1a_         191 LHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLV  270 (384)
T ss_dssp             EEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred             EEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchhHHHHHHHHHHHHHHHHhcccCCce
Confidence            4  5699987 4 556777774 454444332                           345556666677777654   


Q ss_pred             -----------------------cCceeEEEEecccHHHHHHHHHHH--HCC--------cEEeec--------------
Q psy11784        202 -----------------------LHIFWCLILLSITYYLYRYTRRMK--EAK--------IIVANE--------------  234 (284)
Q Consensus       202 -----------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~G--------v~~~~~--------------  234 (284)
                                             .|.++.+++....+.+.+|++.|.  ..+        ++..|.              
T Consensus       271 ~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~  350 (384)
T d1cs1a_         271 KKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAA  350 (384)
T ss_dssp             EEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHH
T ss_pred             eeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCcceeccccCCccceeccccccccccCCHHHHHh
Confidence                                   477888888644455667776654  211        112111              


Q ss_pred             -CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        235 -GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       235 -~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                       +...+.||++.-+    |+++.+++-|+++|+...
T Consensus       351 ~Gi~~~lvRlSvGl----Ed~eDLi~Dl~~AL~aa~  382 (384)
T d1cs1a_         351 AGISETLLRISTGI----EDGEDLIADLENGFRAAN  382 (384)
T ss_dssp             HTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCeEEEEecc----CCHHHHHHHHHHHHHHhc
Confidence             1133578885443    778888888888887764

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=98.61  E-value=1.3e-07  Score=85.25  Aligned_cols=135  Identities=13%  Similarity=0.054  Sum_probs=82.0

Q ss_pred             HHhCCEEEEecccccCccccCccccccccCCCCcEE--Eeccccc-CCcceeEEEec-HHHHHhchh-------------
Q psy11784        121 HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII--TVGKPMG-NGMPIGAVITS-RKIAESLNC-------------  183 (284)
Q Consensus       121 ~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv--~~sK~l~-~G~p~gav~~~-~~i~~~~~~-------------  183 (284)
                      -.+++.+|.||+|-+...+ .  ..   .--..+|+  ++||.++ .|+++|+++++ +.+++.+..             
T Consensus       216 v~~~~~~I~DEaY~~~~f~-~--~~---~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~  289 (425)
T d2hoxa1         216 VIKGCKSIYDMVYYWPHYT-P--IK---YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRET  289 (425)
T ss_dssp             SSTTCEEEEECTTCSTTTS-C--CC---SCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred             hhhCCEEEEeccccCcccc-c--hh---hhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHH
Confidence            3469999999999532111 1  11   11123444  7899999 79999997765 556554432             


Q ss_pred             -----------------------------hhhHHHHHHHHHHHHHhccCc------------------------eeEEEE
Q psy11784        184 -----------------------------LDDNRPSGKYLVRPLGINLHI------------------------FWCLIL  210 (284)
Q Consensus       184 -----------------------------l~~~~~~~~~l~~~L~~~~G~------------------------~~~i~~  210 (284)
                                                   .+.++++.+++.+.|.+. +.                        +.++.+
T Consensus       290 Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~  368 (425)
T d2hoxa1         290 QLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQS-DRFSYQELPQSEYCNYFRRMRPPSPSYAWVKC  368 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTS-SSEECCCCCSCEEETTTTEEECCCCSEEEEEE
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceeeccCCccceeeeeeccCCCcceeeeeC
Confidence                                         112333344444555442 11                        122222


Q ss_pred             ecccHHHHHHHHHHHHCCcEEeecCCC---CCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        211 LSITYYLYRYTRRMKEAKIIVANEGEY---GNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       211 ~~~~~~~~~~~~~l~~~Gv~~~~~~~~---~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      . . .......+.|.++||++.|+..+   ++++|++  +..+++++++++++|+++++
T Consensus       369 ~-~-~~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRis--l~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         369 E-W-EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLS--LIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             C-S-GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEE--CSSCHHHHHHHHHHHHHHHT
T ss_pred             C-C-ChHHHHHHHHHhCCEEEEechhcCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHh
Confidence            1 1 11223445677899999987543   4689995  67799999999999999875

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=98.54  E-value=3e-06  Score=75.11  Aligned_cols=173  Identities=12%  Similarity=0.095  Sum_probs=112.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.++   +++..|++|..-+....++.    ++++.++|+++|+++|+|.....       .+.++....-.||+
T Consensus       138 ~~~~~~~i~---~~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~at-------P~~~~Pl~~GaDiv  203 (397)
T d1y4ia1         138 PEEIRAAMR---PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMS-------PYCQQPLQLGADIV  203 (397)
T ss_dssp             HHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC-------TTTCCGGGGTCSEE
T ss_pred             HHHHHHhcC---CCCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecCcccC-------cccCcchhcCCCEE
Confidence            456666664   67999999998776666776    99999999999999999986542       12333333446777


Q ss_pred             E--ecccccCC--cceeEEEecHHHHHhch--h---------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        157 T--VGKPMGNG--MPIGAVITSRKIAESLN--C---------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       157 ~--~sK~l~~G--~p~gav~~~~~i~~~~~--~---------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      +  +.|-++|.  .-.|+++++++.+...+  .                           +++-.+++..+.+.|++.  
T Consensus       204 ihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~  283 (397)
T d1y4ia1         204 VHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPS  283 (397)
T ss_dssp             EEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             EEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5  56999873  56788888877654321  1                           345556667777777764  


Q ss_pred             ------------------------cCceeEEEEecccHHHHHHHHHHH--HCCc--------EEeec-------------
Q psy11784        202 ------------------------LHIFWCLILLSITYYLYRYTRRMK--EAKI--------IVANE-------------  234 (284)
Q Consensus       202 ------------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv--------~~~~~-------------  234 (284)
                                              .|.++.+++....+.+.+|++.|.  ..+.        +..|.             
T Consensus       284 V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~  363 (397)
T d1y4ia1         284 ITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERL  363 (397)
T ss_dssp             EEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHH
T ss_pred             cCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCccceeeccCcccceeeCccccccccCCHHHHH
Confidence                                    477888888543444566666553  2221        11111             


Q ss_pred             --CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        235 --GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       235 --~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                        +...+.+|++.-+    |+.+.+++-|+++|++
T Consensus       364 ~~Gi~~~liRlsvGl----Ed~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         364 KAGITDGLIRLSVGL----EDPEDIINDLEHAIRK  394 (397)
T ss_dssp             HTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             HcCCCcCEEEEEecc----CCHHHHHHHHHHHHHH
Confidence              1134678885444    6667777777777764

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.45  E-value=1e-05  Score=70.56  Aligned_cols=165  Identities=17%  Similarity=0.099  Sum_probs=106.2

Q ss_pred             eeEEEEcceecCCCcccCChhHHHHHHHHHHHhC--CEEEEecccccCccccCccccccccCCCCcEEEec--ccccCCc
Q psy11784         91 IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIG--GVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG--KPMGNGM  166 (284)
Q Consensus        91 vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s--K~l~~G~  166 (284)
                      +..|++--.-.+.|.+.+    ++++.++|++|+  +++++|-+++ +|-.   ..-.+.+  ..|+++.|  |+++|--
T Consensus       121 ~~~v~~~h~eTstG~~~~----i~~i~~~~~~~~~~~l~~vDavss-~g~~---~i~~d~~--~iD~~~~~sqK~l~gpp  190 (348)
T d1iuga_         121 YAGLLLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG---EVALEAM--GVDAAASGSQKGLMCPP  190 (348)
T ss_dssp             CSEEEEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB---CCCSGGG--TCSEEEEESSSTTCCCS
T ss_pred             CCeeEEEecchhhhhhcc----HHHHHHHHHhhhccceeechhhhc-cccc---ccccccc--cCCEEEeccccceecCC
Confidence            444444444455677888    999999999985  7899998887 4321   1233333  36777665  9997533


Q ss_pred             ceeEEEecHHHHHhchh----------------------------------hh--------hH---HHHHHHHHHHHHhc
Q psy11784        167 PIGAVITSRKIAESLNC----------------------------------LD--------DN---RPSGKYLVRPLGIN  201 (284)
Q Consensus       167 p~gav~~~~~i~~~~~~----------------------------------l~--------~~---~~~~~~l~~~L~~~  201 (284)
                      .+|.++.+++..+.+..                                  ++        +.   +.....+++.++. 
T Consensus       191 G~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~-  269 (348)
T d1iuga_         191 GLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE-  269 (348)
T ss_dssp             CEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ceeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh-
Confidence            47889999998876532                                  11        11   1111122222222 


Q ss_pred             cCc----------eeEEEEecccHHHHHHHHHHHHCCcEEeecC--CCCCEEEEEcCC-CCCHHHHHHHHHHHHHHHHHH
Q psy11784        202 LHI----------FWCLILLSITYYLYRYTRRMKEAKIIVANEG--EYGNVLLFLPAM-CLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       202 ~G~----------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~lr~~p~l-~~t~~~id~~~~~l~~~l~~~  268 (284)
                      .|+          +.++.+ |+......+.+.|.++|+.+.++.  ..+..+|+. .+ ..+.+|++.+++.|+++++++
T Consensus       270 ~gl~~~~~~~s~~v~~~~~-P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg-~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         270 GGLRPVPKRFSPAVAAFYL-PEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLS-LMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             TTCEESCSSBCTTCEEEEC-CTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEEC-CCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccChhhcCCeEEEEEC-CCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEe-CCCCCCHHHHHHHHHHHHHHHHHh
Confidence            222          334444 444456788899999999987652  134689996 55 579999999999999999886

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.43  E-value=1.3e-06  Score=78.42  Aligned_cols=163  Identities=18%  Similarity=0.161  Sum_probs=105.7

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc---cCccccCccccccccCCCCcEEEe-ccccc
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC---GMGRSGSHFWAFQTQGAVPDIITV-GKPMG  163 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t---G~gr~G~~~~a~~~~g~~pDiv~~-sK~l~  163 (284)
                      .+++|||++..- +..|....    ++++.+++++.|.++|.|=-.-   ++-+-|.       +  -.||++. +|.+|
T Consensus       194 ~~~~Aavmi~~P-nt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~-------~--GaDi~~g~~q~fg  259 (437)
T d1wyua1         194 GEEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSLGVLKPPGA-------Y--GADIAVGDGQSLG  259 (437)
T ss_dssp             CTTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGGTBCCHHH-------H--TCSEEEEECTTTT
T ss_pred             ccceeEEEEccc-cccccccc----hHHHHHHhhhccceEEeeechhhhhccccccc-------c--ccceEeeccceec
Confidence            467999887753 44566543    7999999999999988773222   2211121       1  2466643 45543


Q ss_pred             ----C-CcceeEEEecHHHHHhchh-------------------------------------------------------
Q psy11784        164 ----N-GMPIGAVITSRKIAESLNC-------------------------------------------------------  183 (284)
Q Consensus       164 ----~-G~p~gav~~~~~i~~~~~~-------------------------------------------------------  183 (284)
                          + |-..|.+.+++++...+..                                                       
T Consensus       260 ~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~  339 (437)
T d1wyua1         260 LPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGP  339 (437)
T ss_dssp             CCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCc
Confidence                2 3346777778877665533                                                       


Q ss_pred             --h----hhHHHHHHHHHHHHHhccCc--------eeEEEEecccHHHHHHHHHHHHCCcEEeec---CCCCCEEEEEcC
Q psy11784        184 --L----DDNRPSGKYLVRPLGINLHI--------FWCLILLSITYYLYRYTRRMKEAKIIVANE---GEYGNVLLFLPA  246 (284)
Q Consensus       184 --l----~~~~~~~~~l~~~L~~~~G~--------~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~---~~~~~~lr~~p~  246 (284)
                        +    ++...+..|+.++|.++.|.        +.-+.+. ....+..+.++|+++|+.....   ....+.+.+.|.
T Consensus       340 ~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~-~~~~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~T  418 (437)
T d1wyua1         340 EGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALA-LPKDPEAVRRALAERGFHGATPVPREYGENLALFAAT  418 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEE-CSSCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECC
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEE-CCCCHHHHHHHHHhCCCCCCcccccCCCCCeEEEecC
Confidence              1    25556678888888875222        2222221 1235778999999999975432   123478999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy11784        247 MCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       247 l~~t~~~id~~~~~l~~~l  265 (284)
                      =..|++|||.++++|++++
T Consensus       419 E~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         419 ELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             TTCCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHhC
Confidence            8999999999999998763

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=5.1e-06  Score=73.51  Aligned_cols=179  Identities=13%  Similarity=0.155  Sum_probs=117.3

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .++++++.++.++.+  ||+-  ++......+    +++++++|++.|++|++|-.|. |+=-.|.  + ...+.. .|+
T Consensus       154 yd~l~~~a~~~kPkl--Ii~G--~S~y~r~~d----~~~~reiad~vga~l~~D~aH~~GLIa~g~--~-~sP~~~-aDv  221 (416)
T d1dfoa_         154 YADLEKQAKEHKPKM--IIGG--FSAYSGVVD----WAKMREIADSIGAYLFVDMAHVAGLVAAGV--Y-PNPVPH-AHV  221 (416)
T ss_dssp             HHHHHHHHHHHCCSE--EEEE--CSSCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTS--S-CCCTTT-SSE
T ss_pred             HHHHHHHHHHhccce--EEec--ccccccccC----HHHHHHHHHhcCceEEcchhhhhcceeccc--c-CCcccc-cce
Confidence            678888887666663  3332  344444444    8999999999999999999997 5521121  1 122333 488


Q ss_pred             EEe--cccccCCcceeEEEec---HHHHHhchh---------------------------------hhhHHHHHHHHHHH
Q psy11784        156 ITV--GKPMGNGMPIGAVITS---RKIAESLNC---------------------------------LDDNRPSGKYLVRP  197 (284)
Q Consensus       156 v~~--sK~l~~G~p~gav~~~---~~i~~~~~~---------------------------------l~~~~~~~~~l~~~  197 (284)
                      +|.  -|.|.|. +-|.++++   +++.+.+..                                 .+++.++.+.|.+.
T Consensus       222 vt~tThKtlrGP-rggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~  300 (416)
T d1dfoa_         222 VTTTTHKTLAGP-RGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEV  300 (416)
T ss_dssp             EEEESSSTTCCC-SCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeehhhcccCC-CceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            865  5999862 23556654   466555543                                 23677788888888


Q ss_pred             HHhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeec-------CC-CCCEEEEEcCCC----CCHHHHHH
Q psy11784        198 LGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANE-------GE-YGNVLLFLPAMC----LTTENVLF  256 (284)
Q Consensus       198 L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~-~~~~lr~~p~l~----~t~~~id~  256 (284)
                      |.+.         ...++.+++.+.......+.+.|.+.||.+...       ++ ..+-||+-.|..    ..++|+++
T Consensus       301 L~~~G~~iv~ggTdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~  380 (416)
T d1dfoa_         301 FLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKE  380 (416)
T ss_dssp             HHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred             HHhCCcccccCCCCCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHH
Confidence            8875         224556666443334566777777889998631       11 235799976644    57899999


Q ss_pred             HHHHHHHHHHHH
Q psy11784        257 IVSTLNRIFTSL  268 (284)
Q Consensus       257 ~~~~l~~~l~~~  268 (284)
                      +.+.+.++++..
T Consensus       381 iA~~I~~~l~~~  392 (416)
T d1dfoa_         381 LAGWMCDVLDSI  392 (416)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcC
Confidence            999999888653

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.37  E-value=2.2e-05  Score=68.37  Aligned_cols=172  Identities=15%  Similarity=0.104  Sum_probs=99.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccc--cCccccccccCCCCc
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRS--GSHFWAFQTQGAVPD  154 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~--G~~~~a~~~~g~~pD  154 (284)
                      .+.|++.+.   +.+.|||+-.+.   |...+    +++|.++|++||+.||.|.+|+ +|-.  |.   ....+|.  .
T Consensus       109 ~~~l~~~i~---~~tkaIi~~h~~---G~~~~----~~~i~~i~~~~~i~vIeD~a~a-~g~~~~~~---~~g~~g~--~  172 (376)
T d1mdoa_         109 PEHIEAAIT---PQTKAIIPVHYA---GAPAD----LDAIYALGERYGIPVIEDAAHA-TGTSYKGR---HIGARGT--A  172 (376)
T ss_dssp             HHHHHHHCC---TTEEEECCBCGG---GCCCC----HHHHHHHHHHHTCCBCEECTTC-TTCEETTE---ETTSSSE--E
T ss_pred             HHHHHHhcC---CCCeEEEEeCCC---CCccc----hhHHHHHHHhcCceEEeccchh-ccCeeCCe---ecccccC--c
Confidence            577777765   567888865444   44444    8999999999999999999997 4321  11   0111121  2


Q ss_pred             EEEe--cccccCCcceeEEEec-HHHHHhchh------------------------------------------------
Q psy11784        155 IITV--GKPMGNGMPIGAVITS-RKIAESLNC------------------------------------------------  183 (284)
Q Consensus       155 iv~~--sK~l~~G~p~gav~~~-~~i~~~~~~------------------------------------------------  183 (284)
                      +..|  .|.++.|- .|+++++ +++.+.+..                                                
T Consensus       173 ~~Sf~~~K~l~~g~-GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~  251 (376)
T d1mdoa_         173 IFSFHAIKNITCAE-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL  251 (376)
T ss_dssp             EEECCTTSSSCSSS-CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH
T ss_pred             cccCCCcCCCCCCC-CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhh
Confidence            2333  38887532 3666664 445443322                                                


Q ss_pred             ---hhhHHHHHHHHHHHHHhccC------------c-eeEEEEecc---cHHHHHHHHHHHHCCcEEeecC---------
Q psy11784        184 ---LDDNRPSGKYLVRPLGINLH------------I-FWCLILLSI---TYYLYRYTRRMKEAKIIVANEG---------  235 (284)
Q Consensus       184 ---l~~~~~~~~~l~~~L~~~~G------------~-~~~i~~~~~---~~~~~~~~~~l~~~Gv~~~~~~---------  235 (284)
                         +++-++..+++.+.|+++.+            . ...+.....   .....++.+.|.++||-+++.-         
T Consensus       252 ~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~  331 (376)
T d1mdoa_         252 DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYY  331 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHH
T ss_pred             hHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccchhhHHHHHHHHHHCCCCeeeECcchhcCHHH
Confidence               12344555666677766400            0 111111111   1124579999999999775210         


Q ss_pred             ----C----------CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Q psy11784        236 ----E----------YGNVLLFLPAMCLTTENVLFIVSTLNRIF  265 (284)
Q Consensus       236 ----~----------~~~~lr~~p~l~~t~~~id~~~~~l~~~l  265 (284)
                          .          ..+.+.+=....+|++|++++++.|.+++
T Consensus       332 ~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         332 RERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             HHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                0          11345552233569999999999998875

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=6.6e-06  Score=72.84  Aligned_cols=166  Identities=14%  Similarity=0.136  Sum_probs=105.7

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHh--CCEEEEecccccCccccCccccccccCCCCcEEE--eccccc
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEI--GGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT--VGKPMG  163 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~--~sK~l~  163 (284)
                      .+++.+|++|...+....++.    ++++.++|+++  |+++|+|......       +.++....-.|+++  ..|.++
T Consensus       141 ~~~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT~atP-------~~~~Pl~~GaDivvhS~TKy~~  209 (391)
T d1cl1a_         141 QPNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAG-------VLFKALDFGIDVSIQAATKYLV  209 (391)
T ss_dssp             CTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTT-------TSSCGGGGTCSEEEEETTTTTT
T ss_pred             ccccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEEeccccch-------hhhcccccccceEEeecchhcc
Confidence            467999999998777666666    99999999775  9999999877532       22333334467775  569998


Q ss_pred             C-C-cceeEEEecHHHHHhchh---------------------------hhhHHHHHHHHHHHHHhc-------------
Q psy11784        164 N-G-MPIGAVITSRKIAESLNC---------------------------LDDNRPSGKYLVRPLGIN-------------  201 (284)
Q Consensus       164 ~-G-~p~gav~~~~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~~-------------  201 (284)
                      | | .-.|+++.+++..+.+..                           +++..+++..+.+.|++.             
T Consensus       210 GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s  289 (391)
T d1cl1a_         210 GHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPG  289 (391)
T ss_dssp             CSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTT
T ss_pred             ccccccccceeccccccccchhhhhcccccCCchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence            7 3 456777777776555433                           335555666666666654             


Q ss_pred             -------------cCceeEEEEec--ccHHHHHHHHHHH--HCCcEEe--------ec-------------CCCCCEEEE
Q psy11784        202 -------------LHIFWCLILLS--ITYYLYRYTRRMK--EAKIIVA--------NE-------------GEYGNVLLF  243 (284)
Q Consensus       202 -------------~G~~~~i~~~~--~~~~~~~~~~~l~--~~Gv~~~--------~~-------------~~~~~~lr~  243 (284)
                                   .|.++.+.+..  ..+.+.+|++.|.  ..+.-+.        +.             +..++.||+
T Consensus       290 ~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRl  369 (391)
T d1cl1a_         290 SKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRL  369 (391)
T ss_dssp             STTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEE
T ss_pred             hhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHHHcCCcceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEE
Confidence                         34466777752  2234555655442  3232211        10             112357898


Q ss_pred             EcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        244 LPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       244 ~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                      +.-+    |+++.+++-|+++|+++
T Consensus       370 SVGl----Ed~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         370 HIGL----EDVDDLIADLDAGFARI  390 (391)
T ss_dssp             ECCS----SCHHHHHHHHHHHHHHT
T ss_pred             Eecc----CCHHHHHHHHHHHHHhh
Confidence            5443    77888888888888764

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.28  E-value=1.9e-05  Score=71.48  Aligned_cols=171  Identities=14%  Similarity=0.100  Sum_probs=111.2

Q ss_pred             hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc----cCccccCccccccccCCCCcEEEe--c
Q psy11784         86 AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC----GMGRSGSHFWAFQTQGAVPDIITV--G  159 (284)
Q Consensus        86 ~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t----G~gr~G~~~~a~~~~g~~pDiv~~--s  159 (284)
                      ...++++++++......|.....    .+.+.++++++|.++++|=+.-    |+-+.|.         .--|+++.  +
T Consensus       198 ~~~~~~a~v~v~~p~~~g~~e~~----~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~---------~g~div~vg~~  264 (471)
T d1wyub1         198 ELGPHVAALMLTNPNTLGLFERR----ILEISRLCKEAGVQLYYDGANLNAIMGWARPGD---------MGFDVVHLNLH  264 (471)
T ss_dssp             HCSTTEEEEEECSSCTTSCCCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHH---------HTCSEEECCTT
T ss_pred             hhhccccceeeccCCCcccccch----hhhhHHHHHhccccccccccchhhhhhccccCc---------ccccccccccc
Confidence            34567999988876655544333    7889999999999888874422    2211221         11355544  3


Q ss_pred             cccc----CCcc-eeEEEecHHHHHhchh-----------------------------------------------h---
Q psy11784        160 KPMG----NGMP-IGAVITSRKIAESLNC-----------------------------------------------L---  184 (284)
Q Consensus       160 K~l~----~G~p-~gav~~~~~i~~~~~~-----------------------------------------------l---  184 (284)
                      +.+|    +|-| +|++.++++++..+..                                               +   
T Consensus       265 q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~el  344 (471)
T d1wyub1         265 KTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKA  344 (471)
T ss_dssp             TTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHH
Confidence            4443    3334 7888889888777653                                               1   


Q ss_pred             -hhHHHHHHHHHHHHHhc------cCc-eeEEEEe-cccHHHHHHHHHHHHCCcEEeecC---CCCCEEEEEcCCCCCHH
Q psy11784        185 -DDNRPSGKYLVRPLGIN------LHI-FWCLILL-SITYYLYRYTRRMKEAKIIVANEG---EYGNVLLFLPAMCLTTE  252 (284)
Q Consensus       185 -~~~~~~~~~l~~~L~~~------~G~-~~~i~~~-~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~~lr~~p~l~~t~~  252 (284)
                       +...+++.|+.++|+..      .+. +.-+.+. +......++.++|+++|++.....   ...+.+.+++.=.+|++
T Consensus       345 A~~~~~~A~Yla~~L~~~G~~~~~~~~ff~EFvv~~~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tke  424 (471)
T d1wyub1         345 AALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKE  424 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHH
T ss_pred             HHHHHHHHHHHHHHHhhcCceeccCcceeeEEeecCCCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHH
Confidence             25667888999999764      111 1122221 222346679999999998753211   13467888888889999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy11784        253 NVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       253 ~id~~~~~l~~~l~~~~  269 (284)
                      |||.++++|++++++..
T Consensus       425 dID~lv~aL~~i~~e~~  441 (471)
T d1wyub1         425 TLEAFAEAMGALLKKPK  441 (471)
T ss_dssp             HHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHHHHhhH
Confidence            99999999999988654

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.25  E-value=1.4e-05  Score=70.27  Aligned_cols=179  Identities=12%  Similarity=0.129  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .++++++.+++++.+  ||+-      +...+-+--+++++++|++.|++|++|=.|. |+= .|. .+ ...+.. .|+
T Consensus       152 ~d~l~~~a~~~kPkl--Ii~G------~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLI-a~g-~~-~~P~~~-aDv  219 (405)
T d1kl1a_         152 YDDVREKARLHRPKL--IVAA------ASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLV-AAG-LH-PNPVPY-AHF  219 (405)
T ss_dssp             HHHHHHHHHHHCCSE--EEEC------CSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHH-HTT-SS-CCSTTT-CSE
T ss_pred             HHHHHHHHHhhCcce--EEec------ccccccccChHHHHHHHhhhCCEEecchhhHhhhh-hhh-hc-CChhhh-hhh
Confidence            678888888776663  3332      1122222238999999999999999999886 541 121 11 122332 588


Q ss_pred             EEec--ccccCCcceeEEEecHHHHHhchh---------------------------------hhhHHHHHHHHHHHHHh
Q psy11784        156 ITVG--KPMGNGMPIGAVITSRKIAESLNC---------------------------------LDDNRPSGKYLVRPLGI  200 (284)
Q Consensus       156 v~~s--K~l~~G~p~gav~~~~~i~~~~~~---------------------------------l~~~~~~~~~l~~~L~~  200 (284)
                      +|.+  |.|.|. +-|.+++++++.+.+..                                 .+++.++++.|.+.|.+
T Consensus       220 vt~tThKtlrGP-rgg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~  298 (405)
T d1kl1a_         220 VTTTTHKTLRGP-RGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN  298 (405)
T ss_dssp             EEEESSSTTCCC-SCEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccccccCC-CCceEEecchhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence            8765  999862 44777888888776654                                 23666777777777777


Q ss_pred             c---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeec-------CC-CCCEEEEEcCCC----CCHHHHHHHHH
Q psy11784        201 N---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANE-------GE-YGNVLLFLPAMC----LTTENVLFIVS  259 (284)
Q Consensus       201 ~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~-~~~~lr~~p~l~----~t~~~id~~~~  259 (284)
                      .         ...++.+++.+.........+.|.+.||++...       ++ ..+-|||-.|..    ..++|+.++.+
T Consensus       299 ~G~~vv~ggTd~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~  378 (405)
T d1kl1a_         299 EGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAA  378 (405)
T ss_dssp             TTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred             CCceeecCCCccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHH
Confidence            5         223556666433334555556677789998732       11 236799976654    57899999999


Q ss_pred             HHHHHHHHH
Q psy11784        260 TLNRIFTSL  268 (284)
Q Consensus       260 ~l~~~l~~~  268 (284)
                      .+.++++..
T Consensus       379 ~I~~~l~~~  387 (405)
T d1kl1a_         379 IIGLVLKNV  387 (405)
T ss_dssp             HHHHHHTCT
T ss_pred             HHHHHHhcC
Confidence            998888543

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=98.23  E-value=1.3e-05  Score=71.46  Aligned_cols=77  Identities=17%  Similarity=0.171  Sum_probs=56.8

Q ss_pred             CCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEE--ecccccC-
Q psy11784         88 RDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIIT--VGKPMGN-  164 (284)
Q Consensus        88 ~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~--~sK~l~~-  164 (284)
                      .+++.+|++|...+....++.    +++|.++|+++|+++|+|...+.    +  .+.++....-.||++  ..|-++| 
T Consensus       142 ~~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a~----t--P~~~~Pl~~GaDiVvhS~TKyl~GH  211 (421)
T d2ctza1         142 DEKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGM----G--GYLLRPLAWGAALVTHSLTKWVGGH  211 (421)
T ss_dssp             CTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG----G--GTSCCGGGGTCSEEEEETTTTTTCS
T ss_pred             CCCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEecccccc----c--ceeccccccCCcEEEEechhhccCC
Confidence            367999999999888777777    99999999999999999987641    1  122333334478775  5699987 


Q ss_pred             C-cceeEEEec
Q psy11784        165 G-MPIGAVITS  174 (284)
Q Consensus       165 G-~p~gav~~~  174 (284)
                      | .-.|+++.+
T Consensus       212 sD~l~G~vv~~  222 (421)
T d2ctza1         212 GAVIAGAIVDG  222 (421)
T ss_dssp             SCCCCEEEEEC
T ss_pred             CCeEEEEEEcC
Confidence            4 455666654

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=8.3e-05  Score=65.56  Aligned_cols=173  Identities=10%  Similarity=0.104  Sum_probs=110.1

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHH----HhCCEEEEecccccCccccCccccccccCCCC
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIH----EIGGVVIADEIQCGMGRSGSHFWAFQTQGAVP  153 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~----~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~p  153 (284)
                      +++++.++   +++.+|++|..-+....++.    ++++.++|+    ++|+++|+|....+.       ..++....-.
T Consensus       129 ~~~~~~i~---~~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~lvVDnT~atP-------~~~~Pl~~GA  194 (393)
T d1n8pa_         129 NDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSP-------YISNPLNFGA  194 (393)
T ss_dssp             HHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHH-------HHCCGGGGTC
T ss_pred             HHHHHHhh---hhcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceEEEecCccCc-------ccCCchhhCC
Confidence            45666554   67999999998777777676    899999998    788999999876421       2233333346


Q ss_pred             cEEE--ecccccC-C-cceeEEEec-HHHHHhchh---------------------------hhhHHHHHHHHHHHHHh-
Q psy11784        154 DIIT--VGKPMGN-G-MPIGAVITS-RKIAESLNC---------------------------LDDNRPSGKYLVRPLGI-  200 (284)
Q Consensus       154 Div~--~sK~l~~-G-~p~gav~~~-~~i~~~~~~---------------------------l~~~~~~~~~l~~~L~~-  200 (284)
                      ||++  ..|-++| | .-.|+++.+ +++.+.+..                           +++..+++..+.+.|+. 
T Consensus       195 DiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~  274 (393)
T d1n8pa_         195 DIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAAD  274 (393)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhc
Confidence            8775  5699987 4 555666654 556655543                           33444555566666632 


Q ss_pred             ---c-------------------------cCceeEEEEecccHHHHHHHHHHH--HCCc--------EEeec--------
Q psy11784        201 ---N-------------------------LHIFWCLILLSITYYLYRYTRRMK--EAKI--------IVANE--------  234 (284)
Q Consensus       201 ---~-------------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv--------~~~~~--------  234 (284)
                         .                         .|.++.+++.+..+.+.+|++.|.  ..+.        +..|.        
T Consensus       275 ~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~  354 (393)
T d1n8pa_         275 KENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIP  354 (393)
T ss_dssp             TTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSC
T ss_pred             cCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHHHHHHhCCcceecccCCCcCceEeCchhhccccCC
Confidence               1                         267889998644455677777664  2222        11111        


Q ss_pred             -------CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q psy11784        235 -------GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSL  268 (284)
Q Consensus       235 -------~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  268 (284)
                             +...+.||++.-+    |+++.+++-|+++|++.
T Consensus       355 ~~~r~~~gi~~~liRlSvGl----E~~~DLi~Dl~~AL~~a  391 (393)
T d1n8pa_         355 KEAREASGVFDDLVRISVGI----EDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             TTTTTTTSCCTTEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHHh
Confidence                   1123578996544    67777888888877654

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=98.19  E-value=3.6e-05  Score=67.98  Aligned_cols=174  Identities=13%  Similarity=0.123  Sum_probs=109.9

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHH-HhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIH-EIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +.+++.++   ++..+|++|...+....++.    ++++.+.++ ++|+++|+|...+..       ..++....-.|||
T Consensus       135 ~~~~~~i~---~~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~atP-------~~~~Pl~~GaDiV  200 (394)
T d1e5ea_         135 GEVKKHMK---PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSP-------MITNPVDFGVDVV  200 (394)
T ss_dssp             THHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCT-------TTCCGGGGTCSEE
T ss_pred             HHHHHhhc---ccccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEecCcccCc-------ccCCchhcCCCEE
Confidence            45566554   66899999988877666666    888887665 478999999876521       2233333445877


Q ss_pred             E--ecccccC-C-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        157 T--VGKPMGN-G-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       157 ~--~sK~l~~-G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      +  ..|-++| + .-.|+++++++.....+.                             +++..+++..+.+.|++.  
T Consensus       201 vhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~  280 (394)
T d1e5ea_         201 VHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPA  280 (394)
T ss_dssp             EEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             EechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            5  5699987 4 566788888776553321                             335556666777777665  


Q ss_pred             ------------------------cCceeEEEEecccHHHHHHHHHHH--HCCc--------EEeec-------------
Q psy11784        202 ------------------------LHIFWCLILLSITYYLYRYTRRMK--EAKI--------IVANE-------------  234 (284)
Q Consensus       202 ------------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv--------~~~~~-------------  234 (284)
                                              .|.++.+++....+.+.+|++.|.  ..+.        +..|.             
T Consensus       281 V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~  360 (394)
T d1e5ea_         281 VEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEERE  360 (394)
T ss_dssp             EEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHH
T ss_pred             ccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCccceeeccCCccceeECccccccccCCHHHHH
Confidence                                    477778877533344556666553  2222        11121             


Q ss_pred             --CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Q psy11784        235 --GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTSLQ  269 (284)
Q Consensus       235 --~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  269 (284)
                        +...+.||++.-+    |+++.+++-|+++|+.+.
T Consensus       361 ~~Gi~~~liRlSVGl----Ed~eDLi~Dl~qAl~~l~  393 (394)
T d1e5ea_         361 AAGITDGMIRLSVGI----EDADELIADFKQGLDALL  393 (394)
T ss_dssp             HTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCcCEEEEEecc----CCHHHHHHHHHHHHHHhh
Confidence              1123578885444    677778888888877664

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=98.19  E-value=1.5e-06  Score=75.69  Aligned_cols=56  Identities=7%  Similarity=-0.065  Sum_probs=43.3

Q ss_pred             cccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        212 SITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       212 ~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      ++.....++.+.|.++||.+..+-..-+.+|+..-..+|.||++.+++.|++..++
T Consensus       304 ~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         304 ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            44456788999999999998764211124899988888999999999999886553

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=98.14  E-value=8.3e-05  Score=65.28  Aligned_cols=175  Identities=13%  Similarity=0.112  Sum_probs=101.8

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      .+.+++.+   .+.+.+|++..+.|..   ..    +++++++|+++++.+|.|-+|+ +|-.    +.-...|-.-|+.
T Consensus       112 ~~~~~~~i---~~~tk~i~~~~~~g~~---~d----~~~i~~~~~~~~i~lieD~a~a-~ga~----~~g~~~g~~g~~~  176 (384)
T d1b9ha_         112 PEAVAAAV---TPRTKVIMPVHMAGLM---AD----MDALAKISADTGVPLLQDAAHA-HGAR----WQGKRVGELDSIA  176 (384)
T ss_dssp             HHHHHHHC---CTTEEEECCBCGGGCC---CC----HHHHHHHHHHHTCCBCEECTTC-TTCE----ETTEEGGGSSSCE
T ss_pred             hhhhcccc---cccccccccccccccc---cc----cccchhhhhhhhhhhhhhhcee-cccc----cCCEecCcccccc
Confidence            34555543   4668888877666642   22    7899999999999999999997 3221    1111223334555


Q ss_pred             Ee----cccccCCcceeEEEec-HHHHHhchh--------------------------------------------hhhH
Q psy11784        157 TV----GKPMGNGMPIGAVITS-RKIAESLNC--------------------------------------------LDDN  187 (284)
Q Consensus       157 ~~----sK~l~~G~p~gav~~~-~~i~~~~~~--------------------------------------------l~~~  187 (284)
                      ++    .|.++.|- -|+++++ +++.+.+..                                            +++-
T Consensus       177 ~~Sf~~~K~i~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R  255 (384)
T d1b9ha_         177 TFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVR  255 (384)
T ss_dssp             EEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHH
T ss_pred             eecccccccccccc-cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhh
Confidence            54    48886532 3666664 555443322                                            1123


Q ss_pred             HHHHHHHHHHHHhccCc---------------eeEEEEe-cccHHHHHHHHHHHHCCcEEeecCC---------------
Q psy11784        188 RPSGKYLVRPLGINLHI---------------FWCLILL-SITYYLYRYTRRMKEAKIIVANEGE---------------  236 (284)
Q Consensus       188 ~~~~~~l~~~L~~~~G~---------------~~~i~~~-~~~~~~~~~~~~l~~~Gv~~~~~~~---------------  236 (284)
                      +++.+++.+.|.++.+.               +..+.+. .......++.+.|.++||-+++.-+               
T Consensus       256 ~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~  335 (384)
T d1b9ha_         256 DERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPD  335 (384)
T ss_dssp             HHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCS
T ss_pred             hhhhhhhhhhhhcccccccccccccccccccccccceecccccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCc
Confidence            34455666666654111               1122221 1223456799999999998753200               


Q ss_pred             ----------------CCCEEEEEcCCCCC-HHHHHHHHHHHHHHHHH
Q psy11784        237 ----------------YGNVLLFLPAMCLT-TENVLFIVSTLNRIFTS  267 (284)
Q Consensus       237 ----------------~~~~lr~~p~l~~t-~~~id~~~~~l~~~l~~  267 (284)
                                      ..+.+.|=....+| ++|++..++.|.+++.+
T Consensus       336 ~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         336 ESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             SCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                            00234442233456 67999999999998764

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=98.12  E-value=2e-05  Score=68.09  Aligned_cols=171  Identities=12%  Similarity=0.045  Sum_probs=107.2

Q ss_pred             HHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHH-HHhCCEEEEecccccCccccCccccccccCCCCcEE
Q psy11784         78 QAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYI-HEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDII  156 (284)
Q Consensus        78 ~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv  156 (284)
                      +.+++.+   .+++..|++|...+....++.    ++.+.+++ +++|+++|+|...+..       +.++....-.|++
T Consensus        74 ~~~~~~i---~~~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp-------~~~~pl~~GaDiV  139 (331)
T d1pffa_          74 GNIEKHL---KPNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-------ILTNPLDLGVDIV  139 (331)
T ss_dssp             THHHHTC---CTTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-------HHCCGGGGTCSEE
T ss_pred             hhHhhhc---ccccceeeeeccccccccccc----chhhhhhhhcccCceEEeecccccc-------ccccccccCCCEE
Confidence            4455444   367899999998887666666    88888875 6789999999876532       2333333446887


Q ss_pred             E--ecccccC-C-cceeEEEecHHHHHhchh-----------------------------hhhHHHHHHHHHHHHHhc--
Q psy11784        157 T--VGKPMGN-G-MPIGAVITSRKIAESLNC-----------------------------LDDNRPSGKYLVRPLGIN--  201 (284)
Q Consensus       157 ~--~sK~l~~-G-~p~gav~~~~~i~~~~~~-----------------------------l~~~~~~~~~l~~~L~~~--  201 (284)
                      +  ..|-++| | .-.|+++++++.......                             +++..+++..+.+.|++.  
T Consensus       140 v~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~  219 (331)
T d1pffa_         140 VHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKA  219 (331)
T ss_dssp             EEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCc
Confidence            5  5699987 4 566788887665443211                             335555566666666654  


Q ss_pred             ------------------------cCceeEEEEecccHHHHHHHHHHH--HCCcEE--------eec-------------
Q psy11784        202 ------------------------LHIFWCLILLSITYYLYRYTRRMK--EAKIIV--------ANE-------------  234 (284)
Q Consensus       202 ------------------------~G~~~~i~~~~~~~~~~~~~~~l~--~~Gv~~--------~~~-------------  234 (284)
                                              .|.++.+++. ..+.+.+|++.|.  ..+.-.        .|.             
T Consensus       220 V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~-~~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~  298 (331)
T d1pffa_         220 VKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEERE  298 (331)
T ss_dssp             CCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHH
T ss_pred             EEeeccccccCccHHHHHhhcccccCcccceeec-cHHHHHHHHHhCCcceecccCCCCceeEeCccccccccCCHHHHH
Confidence                                    5777888884 4455666666653  222211        110             


Q ss_pred             --CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        235 --GEYGNVLLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       235 --~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                        +..++.+|++.-+    |+.+.+++-|+++++.
T Consensus       299 ~~Gi~~~liRlsvGl----E~~~DLi~Dl~~AL~~  329 (331)
T d1pffa_         299 AAGLTDNLIRLSVGC----ENVQDIIDDLKQALDL  329 (331)
T ss_dssp             HTTCCTTEEEEECCS----SCHHHHHHHHHHHHHT
T ss_pred             hcCCCcCeEEEEeee----CCHHHHHHHHHHHHHH
Confidence              1134678986544    6677777777777764

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.08  E-value=4.1e-06  Score=72.60  Aligned_cols=162  Identities=7%  Similarity=-0.078  Sum_probs=93.8

Q ss_pred             eeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecccccCCcceeE
Q psy11784         91 IATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGA  170 (284)
Q Consensus        91 vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~~G~p~ga  170 (284)
                      +..+.++.+-|   ...+    ++++.++|++||+++|+|=+++ +|-  . ..-.+  ...-|+.+++|.++.+-+.+.
T Consensus       140 ~~~~~~~~~tg---~~~~----~~~i~~~~~~~g~l~ivDavqs-~g~--~-~id~~--~~~vd~~~~~~~k~~~~~~~~  206 (360)
T d1w23a_         140 ENDAYLHITSN---NTIY----GTQYQNFPEINHAPLIADMSSD-ILS--R-PLKVN--QFGMIYAGAQKNLGPSGVTVV  206 (360)
T ss_dssp             TTEEEEEEESE---ETTT----TEECSSCCCCCSSCEEEECTTT-TTS--S-CCCGG--GCSEEEEETTTTTSCTTCEEE
T ss_pred             cccceeEecCC---cccc----ceeeeeccccceeeEEeecccc-ccc--c-ccccc--cccceEEeeccccccCCccee
Confidence            44555665544   3444    5678899999999999999997 321  1 12223  334588888888765434444


Q ss_pred             EEecHHHHHhchh-----------------------------------h-----h----hHHHHHHHHHHHHHhc-----
Q psy11784        171 VITSRKIAESLNC-----------------------------------L-----D----DNRPSGKYLVRPLGIN-----  201 (284)
Q Consensus       171 v~~~~~i~~~~~~-----------------------------------l-----~----~~~~~~~~l~~~L~~~-----  201 (284)
                      ++.++...+....                                   +     .    +.+.............     
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (360)
T d1w23a_         207 IVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYV  286 (360)
T ss_dssp             EEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSE
T ss_pred             eEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            4444433322111                                   0     0    1111111111111111     


Q ss_pred             -------cC-ceeEEEEecccHHHHHHHHHHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        202 -------LH-IFWCLILLSITYYLYRYTRRMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       202 -------~G-~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                             .. ..+.+.+ ++......+...|.++|+.+..+-..-+.+|++.--.+|.||++.+++.+++..+
T Consensus       287 ~~~~~~~rS~~vvsf~i-~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~  358 (360)
T d1w23a_         287 GHAEKGSRSLMNVTFNL-RNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKE  358 (360)
T ss_dssp             ESSCGGGBCSSEEEEEC-SSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cCCChhhcceeEEEEEc-CCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence                   11 1233433 4555677889999999999865421113589986556799999999999988765

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.91  E-value=0.00025  Score=63.43  Aligned_cols=178  Identities=12%  Similarity=0.019  Sum_probs=111.2

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .++++++.++.++.+  ||+-      +...+-+--+++++++|++.|++|++|=.|. |+=-.|.  + ...+.. .|+
T Consensus       169 yd~l~~~a~~~kPkl--Ii~G------~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~--~-~sPl~~-aDv  236 (470)
T d1rv3a_         169 YDRLEENARLFHPKL--IIAG------TSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGV--V-PSPFEH-CHV  236 (470)
T ss_dssp             HHHHHHHHHHHCCSE--EEEC------CSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTS--S-CCGGGT-CSE
T ss_pred             HHHHHHHHHhhCcce--Eeec------hhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccc--c-CChhhe-eee
Confidence            577888887666663  3332      2222223338999999999999999999986 5421221  1 112222 489


Q ss_pred             EEec--ccccCCcceeEEEecHH---------------HHHhchh---------------------------------hh
Q psy11784        156 ITVG--KPMGNGMPIGAVITSRK---------------IAESLNC---------------------------------LD  185 (284)
Q Consensus       156 v~~s--K~l~~G~p~gav~~~~~---------------i~~~~~~---------------------------------l~  185 (284)
                      ||.+  |.|.|- +-|.++++++               +.+.+..                                 .+
T Consensus       237 vt~tTHKtlrGP-rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~  315 (470)
T d1rv3a_         237 VTTTTHKTLRGC-RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQR  315 (470)
T ss_dssp             EEEESSGGGCCC-SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             eeeehhhhccCC-cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHH
Confidence            8765  999761 2255555542               4333322                                 23


Q ss_pred             hHHHHHHHHHHHHHhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeecC-------CCCCEEEEEcCCC-
Q psy11784        186 DNRPSGKYLVRPLGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANEG-------EYGNVLLFLPAMC-  248 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~lr~~p~l~-  248 (284)
                      ++.++++.|.+.|.+.         ...++.+++.+......++.+.|.+.||.+....       ...+-|||-.|.. 
T Consensus       316 qvv~NAk~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alT  395 (470)
T d1rv3a_         316 QVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALT  395 (470)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHH
Confidence            6667777777777775         2335566654333345666667778899886321       1235699976544 


Q ss_pred             ---CCHHHHHHHHHHHHHHHHH
Q psy11784        249 ---LTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       249 ---~t~~~id~~~~~l~~~l~~  267 (284)
                         ..++|+.++.+.|.++++.
T Consensus       396 trG~~e~dm~~iA~~I~~~l~~  417 (470)
T d1rv3a_         396 SRGLLEKDFQKVAHFIHRGIEL  417 (470)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHH
Confidence               5889999999999888853

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.89  E-value=0.00029  Score=62.82  Aligned_cols=177  Identities=11%  Similarity=0.037  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccc-cCccccCccccccccCCCCcE
Q psy11784         77 AQAARNIMEAHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQC-GMGRSGSHFWAFQTQGAVPDI  155 (284)
Q Consensus        77 ~~~l~~~i~~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~~a~~~~g~~pDi  155 (284)
                      .++++++.++.++.+  ||+-      +...+-+--+++++++|++.|++|++|=.|. |+=-.|.  + ...+.. .|+
T Consensus       165 yd~~~~~a~~~kPkl--Ii~G------~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~--~-~sP~~~-aDv  232 (463)
T d2a7va1         165 YNQLALTARLFRPRL--IIAG------TSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKV--I-PSPFKH-ADI  232 (463)
T ss_dssp             HHHHHHHHHHHCCSE--EEEC------CSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTS--S-CCGGGT-CSE
T ss_pred             HHHHHHHHhhcCCce--EEec------ccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhh--h-cChhhh-hhh
Confidence            678888887766663  3332      2222223338999999999999999999987 5521121  1 122333 489


Q ss_pred             EEec--ccccCCcceeEEEecH---------------HHHHhchh---------------------------------hh
Q psy11784        156 ITVG--KPMGNGMPIGAVITSR---------------KIAESLNC---------------------------------LD  185 (284)
Q Consensus       156 v~~s--K~l~~G~p~gav~~~~---------------~i~~~~~~---------------------------------l~  185 (284)
                      ||.+  |.|.|- +-|.+++++               ++.+.+..                                 .+
T Consensus       233 vt~tTHKTlrGP-rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~  311 (463)
T d2a7va1         233 VTTTTHKTLRGA-RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL  311 (463)
T ss_dssp             EEEESSGGGCSC-SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             hhchhhhhhcCC-CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHH
Confidence            8765  999861 225555554               22222222                                 23


Q ss_pred             hHHHHHHHHHHHHHhc---------cCceeEEEEecccHHHHHHHHHHHHCCcEEeec-------CCCCCEEEEEcCCC-
Q psy11784        186 DNRPSGKYLVRPLGIN---------LHIFWCLILLSITYYLYRYTRRMKEAKIIVANE-------GEYGNVLLFLPAMC-  248 (284)
Q Consensus       186 ~~~~~~~~l~~~L~~~---------~G~~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~~~lr~~p~l~-  248 (284)
                      ++.++++.|.+.|.+.         ...++.+++.+.........+.|.+.||.+...       ....+-|||-.|.. 
T Consensus       312 qVv~NAk~La~~L~~~G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~T  391 (463)
T d2a7va1         312 QVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALT  391 (463)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHH
Confidence            6667777777777775         223556666443345667777888899998632       12335689976644 


Q ss_pred             ---CCHHHHHHHHHHHHHHHH
Q psy11784        249 ---LTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       249 ---~t~~~id~~~~~l~~~l~  266 (284)
                         ..++|+.++.+.+.+++.
T Consensus       392 trG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         392 SRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHH
Confidence               578999999999888775

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=0.00014  Score=62.13  Aligned_cols=141  Identities=9%  Similarity=-0.095  Sum_probs=85.9

Q ss_pred             HHHHhCCEEEEecccccCccccCccccccccCCCCcEEEecccccCCcceeEEEecHHHHHhchh---------------
Q psy11784        119 YIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVGKPMGNGMPIGAVITSRKIAESLNC---------------  183 (284)
Q Consensus       119 l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~sK~l~~G~p~gav~~~~~i~~~~~~---------------  183 (284)
                      .|+.+++++++|=++. ++.     .-.+..++..|+.+.+|.++++-+.+.++.++...+....               
T Consensus       161 ~~~~~~~~v~vDa~~~-~~~-----~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (360)
T d1bjna_         161 PDFGADVVVAADFSST-ILS-----RPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGS  234 (360)
T ss_dssp             CCCCTTCCEEEECTTT-TTS-----SCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTT
T ss_pred             ecccccceeeeeeecc-ccc-----eeeeeccceeEEEEcccccccCCCceeEeeehhhhhccccCCcchhhHHHHhhhh
Confidence            4678899999997664 421     1233345556777788999876555666665543322211               


Q ss_pred             -------------------------hh----hHHHHHHHHHHHHHhc------------cCceeEEEEecccHHHHHHHH
Q psy11784        184 -------------------------LD----DNRPSGKYLVRPLGIN------------LHIFWCLILLSITYYLYRYTR  222 (284)
Q Consensus       184 -------------------------l~----~~~~~~~~l~~~L~~~------------~G~~~~i~~~~~~~~~~~~~~  222 (284)
                                               .+    +.++....+.+.+...            .-..+.+.+ ++......+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~-~~~~~~~~~~~  313 (360)
T d1bjna_         235 MFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQL-ADSALDKLFLE  313 (360)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEE-SSGGGHHHHHH
T ss_pred             hccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEc-CCcccHHHHHH
Confidence                                     00    1222222222222222            112344555 45566778889


Q ss_pred             HHHHCCcEEeecCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Q psy11784        223 RMKEAKIIVANEGEYGNVLLFLPAMCLTTENVLFIVSTLNRIFT  266 (284)
Q Consensus       223 ~l~~~Gv~~~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  266 (284)
                      .|.++||.+..+...-+.+|+..-..+|+|||+++++.|++..+
T Consensus       314 ~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~  357 (360)
T d1bjna_         314 ESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFER  357 (360)
T ss_dssp             HHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            99999998875421113489998788899999999999988654

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.76  E-value=0.0036  Score=53.87  Aligned_cols=84  Identities=14%  Similarity=0.166  Sum_probs=53.3

Q ss_pred             hcCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec----cc
Q psy11784         86 AHRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG----KP  161 (284)
Q Consensus        86 ~~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s----K~  161 (284)
                      .....+.||++-...|.   ...    ++++.++|+++|+.||-|-+|+ ||-.    +.-...|-.-|+.++|    |.
T Consensus       107 ~~~~~~~aii~~~~~G~---~~d----~~~i~~~~~~~~i~vIED~a~a-~g~~----~~~~~~G~~gd~~~fSf~~~K~  174 (374)
T d1o69a_         107 ECEKKPKALILTHLYGN---AAK----MDEIVEICKENDIVLIEDAAEA-LGSF----YKNKALGTFGEFGVYSYNGNKI  174 (374)
T ss_dssp             HCSSCCCEEEEECGGGC---CCC----HHHHHHHHHHTTCEEEEECTTC-TTCE----ETTEETTSSSSEEEEECCTTSS
T ss_pred             hcccccccccccccccc---hhh----hHHHHHHhhccCcchhhhhhhh-hcce----ECCeecCCCCceEEEeccCccc
Confidence            33455667766555543   233    8999999999999999999997 3321    1112234456888775    88


Q ss_pred             ccCCcceeEEEe-cHHHHHhch
Q psy11784        162 MGNGMPIGAVIT-SRKIAESLN  182 (284)
Q Consensus       162 l~~G~p~gav~~-~~~i~~~~~  182 (284)
                      ++.|= -|++++ ++++++.+.
T Consensus       175 l~tge-GG~i~tnn~~~~~~~~  195 (374)
T d1o69a_         175 ITTSG-GGMLIGKNKEKIEKAR  195 (374)
T ss_dssp             SCCSS-CEEEEESCHHHHHHHH
T ss_pred             ccccc-ceeehhhhHHHHHhhc
Confidence            86431 255555 567776554

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=97.59  E-value=0.0047  Score=53.18  Aligned_cols=168  Identities=12%  Similarity=0.103  Sum_probs=98.9

Q ss_pred             cCCCeeEEEEcceecCCCcccCChhHHHHHHHHHHHhCCEEEEecccccCccccCccccccccCCCCcEEEec----ccc
Q psy11784         87 HRDNIATLICEPVFVVHGAVVPPPGWLSLMYDYIHEIGGVVIADEIQCGMGRSGSHFWAFQTQGAVPDIITVG----KPM  162 (284)
Q Consensus        87 ~~~~vaavi~Epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~~a~~~~g~~pDiv~~s----K~l  162 (284)
                      ....+.||++=...|   ....    ++++.++|+++|+.+|-|-+|+ +|-    .+.-...|-.-|+.++|    |.+
T Consensus       117 ~~~~t~avi~vh~~G---~~~~----~~~i~~~~~~~~i~lIEDaaqa-~Ga----~~~~~~~G~~g~~~~~Sf~~~K~l  184 (371)
T d2fnua1         117 INERTKAIVSVDYAG---KSVE----VESVQKLCKKHSLSFLSDSSHA-LGS----EYQNKKVGGFALASVFSFHAIKPI  184 (371)
T ss_dssp             CCTTEEEEEEECGGG---CCCC----HHHHHHHHHHHTCEEEEECTTC-TTC----EETTEETTSSSSEEEEECCTTSSS
T ss_pred             ccchhhccccccccc---cccc----cccccccccccchhhccchhhc-cCc----eeccccCCcccccccccccccccc
Confidence            345677777544444   3344    7899999999999999999997 331    12223345556776664    777


Q ss_pred             cCCcceeEEEec-HHHHHhchh---------------------------------------hh----hHHHHHHHHHHHH
Q psy11784        163 GNGMPIGAVITS-RKIAESLNC---------------------------------------LD----DNRPSGKYLVRPL  198 (284)
Q Consensus       163 ~~G~p~gav~~~-~~i~~~~~~---------------------------------------l~----~~~~~~~~l~~~L  198 (284)
                      +.|- .|+++++ +++.+.+..                                       ++    +=++..+++.+.|
T Consensus       185 ~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y~~~l  263 (371)
T d2fnua1         185 TTAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIF  263 (371)
T ss_dssp             CCSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc-ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhhhhcccc
Confidence            6532 3666664 566665543                                       11    2223344455555


Q ss_pred             Hhc--------------cCceeEEEEe-cccHHHHHHHHHHHHCCcEEeecC--------------C--CC-------CE
Q psy11784        199 GIN--------------LHIFWCLILL-SITYYLYRYTRRMKEAKIIVANEG--------------E--YG-------NV  240 (284)
Q Consensus       199 ~~~--------------~G~~~~i~~~-~~~~~~~~~~~~l~~~Gv~~~~~~--------------~--~~-------~~  240 (284)
                      ...              ....+.+.+. .......++.+.|.++||-+++.-              .  .+       +.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~  343 (371)
T d2fnua1         264 KDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAE  343 (371)
T ss_dssp             TTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHE
T ss_pred             cccccccccccccccccccccccccccccchhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCe
Confidence            543              1111222232 112335679999999999775310              0  00       24


Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHHHH
Q psy11784        241 LLFLPAMCLTTENVLFIVSTLNRIFTS  267 (284)
Q Consensus       241 lr~~p~l~~t~~~id~~~~~l~~~l~~  267 (284)
                      +.+=..-.+|++|++..++.+.++++.
T Consensus       344 l~LP~~~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         344 ISLPCHANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            444112235999999999999988865