Psyllid ID: psy11898


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
MIKIMLVRMGTDRSFLSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWGKIQTCGVLFIWSSADFVNCKPYSSEKPIGQIKRMIPT
ccEEEcccccccEEEccccccEEEEEccccccEEEEEEccccEEEEccccccccccccccEEcccEEEEEccccccccccccccccccEEEcccEEEEEEEEEEEEEEcccccccccccccccc
ccEEEEEEEcccccHHHHHHcHcEEEccccccEEEEEEccccEEEEEccccccccccccEEEccccEEEEEcccccccccccccccccEEEEEEEEEEEcccccccEEEEccccccHEEEcccc
MIKIMLVRmgtdrsflSLEFSFhraldpesgrymevhtdqpgiqfytgnyipemsgkkgatytkhcaycfetqnfpnavnihrsswgkiqtCGVLFiwssadfvnckpyssekpigqikrmipt
MIKIMLVRMGTDRSFLSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWGKIQTCGVLFIWSSADFVNCkpyssekpigqikrmipt
MIKIMLVRMGTDRSFLSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWGKIQTCGVLFIWSSADFVNCKPYSSEKPIGQIKRMIPT
***IMLVRMGTDRSFLSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWGKIQTCGVLFIWSSADFVNCKPY***************
MIKIMLVRMGTDRSFLSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWGKIQTCGVLFIWSSADFVNCKPYS*****GQIKRMIP*
MIKIMLVRMGTDRSFLSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWGKIQTCGVLFIWSSADFVNCKPYSSEKPIGQIKRMIPT
MIKIMLVRMGTDRSFLSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWGKIQTCGVLFIWSSADFVNCKPYSSEKPIGQIKRMIPT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
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MIKIMLVRMGTDRSFLSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWGKIQTCGVLFIWSSADFVNCKPYSSEKPIGQIKRMIPT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query124 2.2.26 [Sep-21-2011]
Q9GKX6342 Aldose 1-epimerase OS=Sus yes N/A 0.411 0.149 0.634 3e-13
Q96C23342 Aldose 1-epimerase OS=Hom yes N/A 0.435 0.157 0.581 8e-13
Q5R8U1342 Aldose 1-epimerase OS=Pon yes N/A 0.435 0.157 0.563 4e-12
Q66HG4342 Aldose 1-epimerase OS=Rat yes N/A 0.411 0.149 0.576 5e-12
Q8K157342 Aldose 1-epimerase OS=Mus yes N/A 0.459 0.166 0.534 6e-12
Q5EA79342 Aldose 1-epimerase OS=Bos yes N/A 0.411 0.149 0.576 6e-12
P05149381 Aldose 1-epimerase OS=Aci yes N/A 0.443 0.144 0.375 7e-05
>sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1 Back     alignment and function desciption
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 40/52 (76%), Gaps = 1/52 (1%)

Query: 30  SGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVN 80
           SGR +EV+T QPGIQFYTGN++   + GK GA Y KH  +C ETQN+PNAVN
Sbjct: 265 SGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPKHSGFCLETQNWPNAVN 316




Mutarotase converts alpha-aldose to the beta-anomer. It is active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose.
Sus scrofa (taxid: 9823)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 3
>sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1 Back     alignment and function description
>sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1 Back     alignment and function description
>sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1 Back     alignment and function description
>sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1 Back     alignment and function description
>sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1 Back     alignment and function description
>sp|P05149|GALM_ACICA Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query124
225410060 346 hypothetical protein CLOSTASPAR_05281 [C 0.459 0.164 0.672 4e-15
449495610 382 PREDICTED: aldose 1-epimerase [Taeniopyg 0.548 0.178 0.52 5e-14
332373672 362 unknown [Dendroctonus ponderosae] 0.459 0.157 0.6 6e-14
322789743 425 hypothetical protein SINV_09471 [Solenop 0.459 0.134 0.564 8e-14
196010331 315 hypothetical protein TRIADDRAFT_28936 [T 0.459 0.180 0.578 1e-13
350418649 377 PREDICTED: aldose 1-epimerase-like [Bomb 0.459 0.151 0.548 2e-13
302762310 359 hypothetical protein SELMODRAFT_230384 [ 0.483 0.167 0.583 2e-13
302814272 359 hypothetical protein SELMODRAFT_159754 [ 0.483 0.167 0.583 2e-13
291563501 350 aldose 1-epimerase [butyrate-producing b 0.419 0.148 0.653 2e-13
340722542 377 PREDICTED: aldose 1-epimerase-like isofo 0.459 0.151 0.548 3e-13
>gi|225410060|ref|ZP_03761249.1| hypothetical protein CLOSTASPAR_05281 [Clostridium asparagiforme DSM 15981] gi|225042408|gb|EEG52654.1| hypothetical protein CLOSTASPAR_05281 [Clostridium asparagiforme DSM 15981] Back     alignment and taxonomy information
 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 25  ALDPESGRYMEVHTDQPGIQFYTGNYIPEMS-GKKGATYTKHCAYCFETQNFPNAVNI 81
           A DP SGR +EV+TD PG+QFYT N++  +S  K+GA+Y KHCAYCFETQNFP+AVNI
Sbjct: 263 AWDPGSGRKLEVYTDAPGMQFYTANHLNGVSKNKEGASYPKHCAYCFETQNFPDAVNI 320




Source: Clostridium asparagiforme DSM 15981

Species: Clostridium asparagiforme

Genus: Clostridium

Family: Clostridiaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|449495610|ref|XP_002196937.2| PREDICTED: aldose 1-epimerase [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|332373672|gb|AEE61977.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|322789743|gb|EFZ14909.1| hypothetical protein SINV_09471 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|196010331|ref|XP_002115030.1| hypothetical protein TRIADDRAFT_28936 [Trichoplax adhaerens] gi|190582413|gb|EDV22486.1| hypothetical protein TRIADDRAFT_28936 [Trichoplax adhaerens] Back     alignment and taxonomy information
>gi|350418649|ref|XP_003491925.1| PREDICTED: aldose 1-epimerase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|302762310|ref|XP_002964577.1| hypothetical protein SELMODRAFT_230384 [Selaginella moellendorffii] gi|300168306|gb|EFJ34910.1| hypothetical protein SELMODRAFT_230384 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|302814272|ref|XP_002988820.1| hypothetical protein SELMODRAFT_159754 [Selaginella moellendorffii] gi|300143391|gb|EFJ10082.1| hypothetical protein SELMODRAFT_159754 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|291563501|emb|CBL42317.1| aldose 1-epimerase [butyrate-producing bacterium SS3/4] Back     alignment and taxonomy information
>gi|340722542|ref|XP_003399663.1| PREDICTED: aldose 1-epimerase-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query124
UNIPROTKB|F1NZC0358 GALM "Uncharacterized protein" 0.459 0.159 0.637 7.5e-15
FB|FBgn0035679364 CG10467 [Drosophila melanogast 0.459 0.156 0.531 2.9e-14
UNIPROTKB|Q9GKX6342 GALM "Aldose 1-epimerase" [Sus 0.411 0.149 0.634 8.3e-14
UNIPROTKB|B8ZZ75194 GALM "Aldose 1-epimerase" [Hom 0.411 0.262 0.596 1e-13
UNIPROTKB|H7C1B5218 GALM "Aldose 1-epimerase" [Hom 0.411 0.233 0.596 1e-13
ZFIN|ZDB-GENE-040718-66342 galm "galactose mutarotase" [D 0.508 0.184 0.531 1.1e-13
UNIPROTKB|Q96C23342 GALM "Aldose 1-epimerase" [Hom 0.411 0.149 0.596 3e-13
UNIPROTKB|J9P687346 GALM "Uncharacterized protein" 0.435 0.156 0.578 5.3e-13
UNIPROTKB|E2QWA2342 GALM "Uncharacterized protein" 0.411 0.149 0.596 8.5e-13
RGD|1359459342 Galm "galactose mutarotase (al 0.572 0.207 0.486 8.5e-13
UNIPROTKB|F1NZC0 GALM "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 193 (73.0 bits), Expect = 7.5e-15, P = 7.5e-15
 Identities = 37/58 (63%), Positives = 43/58 (74%)

Query:    24 RALDPESGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVN 80
             RA  P SGR MEVHT QPG+QFYTGN +   + GK  ATY KH A+C ETQN+P+AVN
Sbjct:   275 RAHHPPSGRTMEVHTTQPGLQFYTGNNLDGSLKGKGAATYPKHSAFCLETQNWPDAVN 332




GO:0016853 "isomerase activity" evidence=IEA
GO:0019318 "hexose metabolic process" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
FB|FBgn0035679 CG10467 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GKX6 GALM "Aldose 1-epimerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZZ75 GALM "Aldose 1-epimerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H7C1B5 GALM "Aldose 1-epimerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-66 galm "galactose mutarotase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q96C23 GALM "Aldose 1-epimerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P687 GALM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWA2 GALM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1359459 Galm "galactose mutarotase (aldose 1-epimerase)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R8U1GALM_PONAB5, ., 1, ., 3, ., 30.56360.43540.1578yesN/A
Q5EA79GALM_BOVIN5, ., 1, ., 3, ., 30.57690.41120.1491yesN/A
Q66HG4GALM_RAT5, ., 1, ., 3, ., 30.57690.41120.1491yesN/A
Q9GKX6GALM_PIG5, ., 1, ., 3, ., 30.63460.41120.1491yesN/A
Q8K157GALM_MOUSE5, ., 1, ., 3, ., 30.53440.45960.1666yesN/A
Q96C23GALM_HUMAN5, ., 1, ., 3, ., 30.58180.43540.1578yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query124
cd09019326 cd09019, galactose_mutarotase_like, galactose muta 3e-25
PLN00194337 PLN00194, PLN00194, aldose 1-epimerase; Provisiona 8e-23
TIGR02636336 TIGR02636, galM_Leloir, galactose mutarotase 3e-13
pfam01263301 pfam01263, Aldose_epim, Aldose 1-epimerase 6e-10
COG2017308 COG2017, GalM, Galactose mutarotase and related en 4e-08
PRK11055342 PRK11055, galM, galactose-1-epimerase; Provisional 5e-08
>gnl|CDD|185696 cd09019, galactose_mutarotase_like, galactose mutarotase_like Back     alignment and domain information
 Score = 96.8 bits (242), Expect = 3e-25
 Identities = 30/58 (51%), Positives = 38/58 (65%)

Query: 24  RALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNI 81
           R   PESGR +EV+T QPG+QFYTGN++    G  G  Y K   +C ETQ+FP+A N 
Sbjct: 247 RLTSPESGRKLEVYTTQPGVQFYTGNFLDGTPGGGGKVYGKRSGFCLETQHFPDAPNH 304


Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily. Length = 326

>gnl|CDD|215098 PLN00194, PLN00194, aldose 1-epimerase; Provisional Back     alignment and domain information
>gnl|CDD|233958 TIGR02636, galM_Leloir, galactose mutarotase Back     alignment and domain information
>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase Back     alignment and domain information
>gnl|CDD|224928 COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|182931 PRK11055, galM, galactose-1-epimerase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 124
PTZ00485376 aldolase 1-epimerase; Provisional 99.97
KOG1604|consensus353 99.96
PRK11055342 galM galactose-1-epimerase; Provisional 99.96
TIGR02636335 galM_Leloir galactose mutarotase. Members of this 99.95
PLN00194337 aldose 1-epimerase; Provisional 99.94
cd09019326 galactose_mutarotase_like galactose mutarotase_lik 99.9
COG2017308 GalM Galactose mutarotase and related enzymes [Car 99.79
PRK15172300 putative aldose-1-epimerase; Provisional 99.61
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 99.44
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 99.2
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 99.11
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 99.06
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 98.45
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 96.83
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
Probab=99.97  E-value=3.3e-31  Score=220.76  Aligned_cols=99  Identities=21%  Similarity=0.239  Sum_probs=89.7

Q ss_pred             CCceeeeecCC------ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCcc-CCCCCcccCCceeEEEccCCCCCCCCC
Q psy11898          9 MGTDRSFLSLE------FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM-SGKKGATYTKHCAYCFETQNFPNAVNI   81 (124)
Q Consensus         9 ~GyDh~Fvl~~------~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~-~g~~g~~~~~~~GiclE~Q~~PDAiN~   81 (124)
                      +||||||+|+.      +++|+|++|.|||+|+|+||||||||||||++++. .+++|+.|.+|+|||||||+||||+||
T Consensus       265 ~G~Dh~fvl~~~~~~~~~~~a~l~~p~sg~~l~v~T~~P~~qiYT~n~l~~~~~~~~g~~~~~~~giclE~Q~~PDa~n~  344 (376)
T PTZ00485        265 CGYDHPLAIDGWEKGKLMLHAEAKSPVTNICMKVYSTFPCMWVYTANNKPLPASGGPGQRYARWTGMGLEPQYFPDVANH  344 (376)
T ss_pred             CCCCcceEECCCCCccccEEEEEEcCCCCCEEEEEECCCEEEEECCCCCCccccCCCCcCcCCCCEEEEeccCCCCcccc
Confidence            39999999942      56899999999999999999999999999999763 578889999999999999999999999


Q ss_pred             -CCCCCceeecCCceEEEEEEEEEEee
Q psy11898         82 -HRSSWGKIQTCGVLFIWSSADFVNCK  107 (124)
Q Consensus        82 -p~~~~~~l~~~~~~y~~~t~y~f~~~  107 (124)
                       |+|++.+|+++++.|.++|+|+|+..
T Consensus       345 ~~~fp~~vl~pge~~~~~~t~y~f~~~  371 (376)
T PTZ00485        345 YPKYPSCIVRRGERRFTETILNEFTVE  371 (376)
T ss_pred             cCCCCCeEECCCCeEEEEEEEEEEEee
Confidence             99999888888855999999999654



>KOG1604|consensus Back     alignment and domain information
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query124
1snz_A344 Crystal Structure Of Apo Human Galactose Mutarotase 7e-14
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase Length = 344 Back     alignment and structure

Iteration: 1

Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 41/55 (74%), Gaps = 1/55 (1%) Query: 30 SGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVNIHR 83 SGR +EV+T QPG+QFYTGN++ + GK GA Y KH +C ETQN+P+AVN R Sbjct: 267 SGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPR 321

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query124
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 2e-28
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 2e-28
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 3e-27
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 7e-25
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 3e-24
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 1e-06
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 2e-06
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 1e-04
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Length = 344 Back     alignment and structure
 Score =  104 bits (263), Expect = 2e-28
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 24  RALDPESGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVN 80
           R     SGR +EV+T QPG+QFYTGN++   + GK GA Y KH  +C ETQN+P+AVN
Sbjct: 261 RVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVN 318


>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Length = 339 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Length = 347 Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Length = 342 Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Length = 338 Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query124
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 99.94
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 99.92
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 99.91
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 99.9
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 99.85
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 99.83
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 99.82
3os7_A341 Galactose mutarotase-like protein; structural geno 99.52
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 99.49
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 99.33
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 99.25
3q1n_A294 Galactose mutarotase related enzyme; structural ge 99.24
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 98.7
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 98.52
1jov_A270 HI1317; hypothetical protein, structure 2 function 85.97
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
Probab=99.94  E-value=1.5e-26  Score=188.75  Aligned_cols=90  Identities=17%  Similarity=0.111  Sum_probs=81.6

Q ss_pred             CceeeeecCC-ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCCCCCCCCCCCCCce
Q psy11898         10 GTDRSFLSLE-FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWGK   88 (124)
Q Consensus        10 GyDh~Fvl~~-~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~PDAiN~p~~~~~~   88 (124)
                      ||||||+++. +++|+|.+  |||+|+|+||+|+|||||+|++++. + .|..|.+++|||||||.+|  +|+|+|++.+
T Consensus       241 g~Dh~f~l~~~~~~a~l~~--sg~~l~v~t~~p~~q~YTgn~l~~~-g-~g~~~~~~~g~clE~q~~P--~n~~~f~~~v  314 (338)
T 3imh_A          241 GLDHPFILNGNNPAALLSS--NKHRLIVKTNAPALVLYAGNHFNHT-G-IVNNIGQYDGITFEAQCPP--AEGNDLGQIT  314 (338)
T ss_dssp             SCEEEEEECSCSCSEEEEC--SSEEEEEEESSSEEEEECCTTCCSB-T-TBTTCCTTSCEECEEESCC--CSSSCCGGGE
T ss_pred             CCCCceeecCCceEEEEEC--CCeEEEEEeCCCEEEEeCCCCcCCC-C-CCcccCccCEEEEEccCCC--CCCCCCCCeE
Confidence            9999999964 56888976  9999999999999999999999764 5 6888999999999999999  9999999887


Q ss_pred             eecCCceEEEEEEEEEEe
Q psy11898         89 IQTCGVLFIWSSADFVNC  106 (124)
Q Consensus        89 l~~~~~~y~~~t~y~f~~  106 (124)
                      |+|++ .|.++|+|+|..
T Consensus       315 L~pGe-~y~~~t~y~f~~  331 (338)
T 3imh_A          315 LLPFE-KFKRTVDWKFEE  331 (338)
T ss_dssp             ECTTC-CEEEEEEEEEEE
T ss_pred             ECCCC-EEEEEEEEEECC
Confidence            77777 999999999975



>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 124
d1nsza_340 b.30.5.4 (A:) Galactose mutarotase {Lactococcus la 1e-18
d1lura_329 b.30.5.4 (A:) Aldose 1-epimerase homologue {Nemato 2e-17
d1so0a_344 b.30.5.4 (A:) Galactose mutarotase {Human (Homo sa 1e-16
d1z45a1342 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's 2e-16
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Length = 340 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Aldose 1-epimerase (mutarotase)
domain: Galactose mutarotase
species: Lactococcus lactis [TaxId: 1358]
 Score = 77.5 bits (190), Expect = 1e-18
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 9   MGTDRSFLSLEFSFHR--ALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHC 66
            G D  FL  +    +  A        + V TDQP I  +T N+    +         H 
Sbjct: 239 KGIDHPFLLDQLGLDKEQARLTLDDTSISVFTDQPSIVIFTANFGDLGTLYHEKKQVHHG 298

Query: 67  AYCFETQNFPNAVNI 81
              FE Q  P +  I
Sbjct: 299 GITFECQVSPGSEQI 313


>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 329 Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Length = 344 Back     information, alignment and structure
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query124
d1nsza_340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 99.95
d1lura_329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 99.95
d1so0a_344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 99.93
d1z45a1342 Galactose mutarotase {Baker's yeast (Saccharomyces 99.92
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Aldose 1-epimerase (mutarotase)
domain: Galactose mutarotase
species: Lactococcus lactis [TaxId: 1358]
Probab=99.95  E-value=5.6e-29  Score=200.70  Aligned_cols=97  Identities=21%  Similarity=0.153  Sum_probs=84.7

Q ss_pred             CCceeeeecCC----ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCCCCCCCCCCC
Q psy11898          9 MGTDRSFLSLE----FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRS   84 (124)
Q Consensus         9 ~GyDh~Fvl~~----~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~PDAiN~p~~   84 (124)
                      .||||||+++.    +.+|.|.+  +|++|+|+||||+|||||||+++.....++..+.+|+|||||||.+|||+||++|
T Consensus       239 ~G~D~~fvl~~~~~~~~~~~l~~--~~~~l~v~T~~p~~qvYT~n~~~~~~~~~~~~~~~~~gi~lEpq~~Pda~N~~~f  316 (340)
T d1nsza_         239 KGIDHPFLLDQLGLDKEQARLTL--DDTSISVFTDQPSIVIFTANFGDLGTLYHEKKQVHHGGITFECQVSPGSEQIPEL  316 (340)
T ss_dssp             TSCEEEEEESSCBTTSCCEEEEE--TTEEEEEEESSSEEEEECCCCTTCCCEETTEECCTTCCEECEEESCTTTTTCGGG
T ss_pred             CCCCCceeeccCCCCcceeEEec--CCCcEEEEeCCCEEEEEcCCcCCccccCCCCcCCCCCEEEEecCCCCCccCCCCC
Confidence            48999999863    55777766  5899999999999999999999765555667889999999999999999999999


Q ss_pred             CCceeecCCceEEEEEEEEEEeee
Q psy11898         85 SWGKIQTCGVLFIWSSADFVNCKP  108 (124)
Q Consensus        85 ~~~~l~~~~~~y~~~t~y~f~~~~  108 (124)
                      ++.+|.+++ .|.++|+|+|++|.
T Consensus       317 ~~~~L~pge-~y~~~t~Y~Fs~~~  339 (340)
T d1nsza_         317 GDISLKAGE-KYQATTIYSLHTKL  339 (340)
T ss_dssp             CCCEECTTC-EEEEEEEEEEEECC
T ss_pred             CCeEECCCC-EEEEEEEEEEEEEe
Confidence            987777766 99999999999874



>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure